format-version: 1.2 ontology: uberon/composite-metazoan subsetdef: BrainName "BrainName project terms" subsetdef: BrainName_Embargo "Terms to hold back pending BrainName paper publication." subsetdef: EmbDevSlim "EmbDevSlim" subsetdef: FB_gloss "terms for FlyBase glossary page" subsetdef: FT_new "FlyTed temp subset for edit tracking purposes" subsetdef: FlyTed "Testis slim" subsetdef: RD "terms for rd test ontology" subsetdef: abnormal_slim "Abnormal/normal slim" subsetdef: absent_slim "Absent/present slim" subsetdef: anatomical_site_slim "Anatomical Site slim" subsetdef: attribute_slim "Attribute slim" subsetdef: cell_quality "cell_quality" subsetdef: cell_slim "cell_slim" subsetdef: cur "cur" subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series in an individual organism rather than by homology" subsetdef: deprecated "warning of impending obsoletion" subsetdef: developmental_classification "developmental_classification" subsetdef: disjointness_axiom_removed "A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology." subsetdef: disposition_slim "Disposition slim" subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked" subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes." subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked" subsetdef: frequent_anatomy_items "Frequently Used Anatomy slim" subsetdef: functional_classification "functional_classification" subsetdef: goslim_aspergillus "Aspergillus GO slim" subsetdef: goslim_candida "Candida GO slim" subsetdef: goslim_generic "Generic GO slim" subsetdef: goslim_goa "GOA and proteome slim" subsetdef: goslim_metagenomics "Metagenomics GO slim" subsetdef: goslim_pir "PIR GO slim" subsetdef: goslim_plant "Plant GO slim" subsetdef: goslim_pombe "Fission yeast GO slim" subsetdef: goslim_yeast "Yeast GO slim" subsetdef: gosubset_prok "Prokaryotic GO subset" subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes" subsetdef: hidden_assertion "Stanza contains hidden assertion." subsetdef: high_level_annotation_qc "High-level terms not to be used for direct annotation" subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA" subsetdef: inherited_grouping_class "A grouping class that originates in two or more separate anatomical ontologies. Includes 'region of X' type terms" subsetdef: larval_OF "larval olfactory system" subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads" subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out" subsetdef: mf_needs_review "Catalytic activity terms in need of attention" subsetdef: olfactory_system_draft "adult olfactory system model" subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements" subsetdef: organism_views "Organism View slim" subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA" subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist" subsetdef: scalar_slim "Scalar slim" subsetdef: sectional_anatomy_items "Sectional Anatomy Item slim" subsetdef: uberon_slim "Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms" subsetdef: unvetted "unvetted" subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" subsetdef: upper_ontology_conflict "Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision." subsetdef: value_slim "Value slim" subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO" synonymtypedef: ATTRIBUTION_REQUIRED "" synonymtypedef: ATTRIBUTION_REQUIRED "expert consultation and attribution required" synonymtypedef: BRAIN_NAME_ABV "BrainName official abbreviation" synonymtypedef: BRAND_NAME "" synonymtypedef: BRAND_NAME "BRAND NAME" synonymtypedef: DEVELOPMENTAL "developmental term" synonymtypedef: DUBIOUS "" synonymtypedef: DUBIOUS "dubious or contested synonym" synonymtypedef: FORMULA "" synonymtypedef: FORMULA "FORMULA" synonymtypedef: HOMOLOGY "" synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" synonymtypedef: INCONSISTENT "" synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" synonymtypedef: INN "" synonymtypedef: INN "INN" synonymtypedef: IUPAC_NAME "" synonymtypedef: IUPAC_NAME "IUPAC NAME" synonymtypedef: InChI "" synonymtypedef: InChI "InChI" synonymtypedef: InChIKey "" synonymtypedef: InChIKey "InChIKey" synonymtypedef: PLURAL "" synonymtypedef: PLURAL "PLURAL" synonymtypedef: PLURAL "plural term" synonymtypedef: PRO-short-label "" synonymtypedef: PRO-short-label "Unique short label for PRO terms for display purposes" EXACT synonymtypedef: PSI-MOD-label "" synonymtypedef: PSI-MOD-label "Unique short label curated by PSI-MOD" EXACT synonymtypedef: SENSU "" synonymtypedef: SENSU "taxonomic disambiguation" synonymtypedef: SMILES "" synonymtypedef: SMILES "SMILES" synonymtypedef: systematic_synonym "" synonymtypedef: systematic_synonym "Systematic synonym" EXACT treat-xrefs-as-equivalent: BILA treat-xrefs-as-equivalent: BSPO treat-xrefs-as-equivalent: CARO treat-xrefs-as-equivalent: GO treat-xrefs-as-equivalent: NIF_GrossAnatomy treat-xrefs-as-equivalent: OG treat-xrefs-as-equivalent: VAO treat-xrefs-as-has-subclass: EHDAA treat-xrefs-as-has-subclass: EHDAA2 treat-xrefs-as-has-subclass: EMAPA treat-xrefs-as-has-subclass: EV treat-xrefs-as-has-subclass: OGES treat-xrefs-as-genus-differentia: AAO part_of NCBITaxon:8292 treat-xrefs-as-genus-differentia: AAO part_of NCBITaxon:8353 treat-xrefs-as-genus-differentia: CARO part_of NCBITaxon:7955 treat-xrefs-as-genus-differentia: CARO part_of NCBITaxon:8353 treat-xrefs-as-genus-differentia: CL part_of NCBITaxon:7955 treat-xrefs-as-genus-differentia: CL part_of NCBITaxon:8353 treat-xrefs-as-genus-differentia: FBbt part_of NCBITaxon:7227 treat-xrefs-as-genus-differentia: FMA part_of NCBITaxon:9606 treat-xrefs-as-genus-differentia: HAO part_of NCBITaxon:7399 treat-xrefs-as-genus-differentia: KUPO part_of NCBITaxon:9606 treat-xrefs-as-genus-differentia: MA part_of NCBITaxon:10088 treat-xrefs-as-genus-differentia: MFO part_of NCBITaxon:8089 treat-xrefs-as-genus-differentia: SPD part_of NCBITaxon:6893 treat-xrefs-as-genus-differentia: TADS part_of NCBITaxon:6939 treat-xrefs-as-genus-differentia: TAO part_of NCBITaxon:32443 treat-xrefs-as-genus-differentia: TAO part_of NCBITaxon:7955 treat-xrefs-as-genus-differentia: TGMA part_of NCBITaxon:44484 treat-xrefs-as-genus-differentia: VAO part_of NCBITaxon:8353 treat-xrefs-as-genus-differentia: WBbt part_of NCBITaxon:6237 treat-xrefs-as-genus-differentia: XAO part_of NCBITaxon:8353 treat-xrefs-as-genus-differentia: ZFA part_of NCBITaxon:7954 treat-xrefs-as-genus-differentia: ncithesaurus part_of NCBITaxon:40674 treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292 treat-xrefs-as-reverse-genus-differentia: FBbt part_of NCBITaxon:7227 treat-xrefs-as-reverse-genus-differentia: FMA part_of NCBITaxon:9606 treat-xrefs-as-reverse-genus-differentia: HAO part_of NCBITaxon:7399 treat-xrefs-as-reverse-genus-differentia: MA part_of NCBITaxon:10088 treat-xrefs-as-reverse-genus-differentia: MFO part_of NCBITaxon:8089 treat-xrefs-as-reverse-genus-differentia: SPD part_of NCBITaxon:6893 treat-xrefs-as-reverse-genus-differentia: TADS part_of NCBITaxon:6939 treat-xrefs-as-reverse-genus-differentia: TAO part_of NCBITaxon:32443 treat-xrefs-as-reverse-genus-differentia: TGMA part_of NCBITaxon:44484 treat-xrefs-as-reverse-genus-differentia: WBbt part_of NCBITaxon:6237 treat-xrefs-as-reverse-genus-differentia: XAO part_of NCBITaxon:8353 treat-xrefs-as-reverse-genus-differentia: ZFA part_of NCBITaxon:7954 treat-xrefs-as-reverse-genus-differentia: ncithesaurus part_of NCBITaxon:40674 [Term] id: MA:0000098 name: mesocardium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000948 ! heart [Term] id: MA:0000147 name: skin apocrine gland (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002419 ! skin gland [Term] id: MA:0000160 name: coat hair follicle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002073 ! hair follicle [Term] id: MA:0000230 name: spinal ganglion/nerve (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: MA:0000241 name: endolymphatic duct/sac (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001846 ! internal ear [Term] id: MA:0000288 name: olfactory receptor nerve (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: MA:0000307 name: other limb bone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002428 ! limb bone [Term] id: MA:0000345 name: oral region cartilage/bone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0000166 ! oral opening [Term] id: MA:0000362 name: liver middle lobe (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001113 ! lobe of liver [Term] id: MA:0000485 name: yellow elastic cartilage (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001996 ! elastic cartilage [Term] id: MA:0000499 name: lower back blood vessel (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003835 ! abdominal segment blood vessel is_a: UBERON:0004258 ! back blood vessel relationship: part_of UBERON:0005462 ! lower back [Term] id: MA:0000500 name: lower back bone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone relationship: part_of UBERON:0005462 ! lower back [Term] id: MA:0000501 name: lower back connective tissue (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003838 ! abdominal segment connective tissue is_a: UBERON:0004267 ! back connective tissue relationship: part_of UBERON:0005462 ! lower back [Term] id: MA:0000503 name: lower back nerve (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003825 ! abdominal segment nerve is_a: UBERON:0004215 ! back nerve relationship: part_of UBERON:0005462 ! lower back [Term] id: MA:0000505 name: upper back blood vessel (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0004258 ! back blood vessel relationship: part_of UBERON:0008231 ! upper back [Term] id: MA:0000506 name: upper back bone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0004247 ! back bone relationship: part_of UBERON:0008231 ! upper back [Term] id: MA:0000507 name: upper back connective tissue (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003837 ! thoracic segment connective tissue is_a: UBERON:0004267 ! back connective tissue relationship: part_of UBERON:0008231 ! upper back [Term] id: MA:0000509 name: upper back nerve (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003824 ! thoracic segment nerve is_a: UBERON:0004215 ! back nerve relationship: part_of UBERON:0008231 ! upper back [Term] id: MA:0000532 name: pelvis bone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003828 ! abdominal segment bone relationship: part_of UBERON:0002355 ! pelvis [Term] id: MA:0000536 name: iliac region muscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001325 ! muscle of pelvis [Term] id: MA:0000539 name: urogenital muscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001325 ! muscle of pelvis [Term] id: MA:0000540 name: female urogenital muscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0000539 ! urogenital muscle (mouse) [Term] id: MA:0000541 name: male urogenital muscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0000539 ! urogenital muscle (mouse) [Term] id: MA:0000568 name: head or neck blood vessel (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: MA:0000570 name: head or neck connective tissue (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: MA:0000572 name: head or neck nerve or ganglion (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: MA:0000573 name: head or neck organ (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: MA:0000574 name: head or neck skin (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: MA:0000580 name: head nerve/ganglion (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0000572 ! head or neck nerve or ganglion (mouse) relationship: part_of UBERON:0000033 ! head [Term] id: MA:0000581 name: head organ (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0000573 ! head or neck organ (mouse) relationship: part_of UBERON:0000033 ! head [Term] id: MA:0000589 name: neck organ (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0000573 ! head or neck organ (mouse) relationship: part_of UBERON:0000974 ! neck [Term] id: MA:0000666 name: knee bone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0005893 ! leg bone relationship: part_of UBERON:0001465 ! knee [Term] id: MA:0000722 name: pancreas left lobe (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0007324 ! pancreatic lobe [Term] id: MA:0000723 name: pancreas right lobe (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0007324 ! pancreatic lobe [Term] id: MA:0000732 name: peyer's patch follicle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001211 ! Peyer's patch [Term] id: MA:0000733 name: peyer's patch dome (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0000732 ! peyer's patch follicle (mouse) [Term] id: MA:0000743 name: lymph node primary follicle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0000444 ! lymphoid follicle [Term] id: MA:0000747 name: lymph organ (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: MA:0000748 name: afferent lymphatic vessel (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001473 ! lymphatic vessel [Term] id: MA:0000749 name: efferent lymphatic vessel (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001473 ! lymphatic vessel [Term] id: MA:0000754 name: spleen marginal sinus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002106 ! spleen [Term] id: MA:0000759 name: spleen trabecular artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001265 ! trabecula of spleen [Term] id: MA:0000760 name: spleen trabecular vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001265 ! trabecula of spleen [Term] id: MA:0000763 name: spleen central arteriole (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001959 ! white pulp of spleen [Term] id: MA:0000773 name: lingual tonsillar tissue (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002372 ! tonsil [Term] id: MA:0000777 name: tonsil crypt (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002372 ! tonsil [Term] id: MA:0000782 name: vibrissa hair (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0006378 ! vibrissa [Term] id: MA:0000802 name: superficial dermis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002067 ! dermis [Term] id: MA:0000808 name: epidermis suprabasal layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001003 ! epidermis [Term] id: MA:0000812 name: brain marginal zone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000955 ! brain [Term] id: MA:0000822 name: brainstem periaqueductal grey (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003040 ! central gray substance of midbrain relationship: part_of UBERON:0002298 ! brainstem [Term] id: MA:0000844 name: tuberal area (mouse) namespace: adult_mouse_anatomy.gxd synonym: "tuberal nucleus" RELATED [] synonym: "tuberal region" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002272 ! medial zone of hypothalamus [Term] id: MA:0000862 name: lateral thalamic group (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: MA:0000863 name: medial thalamic group (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: MA:0000867 name: ventral posterior thalamic group (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: MA:0000871 name: intralaminar thalamic group (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: MA:0000903 name: anterior medial cortex (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: MA:0000915 name: secondary visual cortex (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: MA:0000920 name: retrohippocampal cortex (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: MA:0000926 name: anterior division (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001880 ! bed nucleus of stria terminalis [Term] id: MA:0000927 name: fusiform nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0000926 ! anterior division (mouse) [Term] id: MA:0000929 name: oval nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0000926 ! anterior division (mouse) [Term] id: MA:0000930 name: posterior division (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001880 ! bed nucleus of stria terminalis [Term] id: MA:0000931 name: principal nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0000930 ! posterior division (mouse) [Term] id: MA:0000932 name: transverse nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0000930 ! posterior division (mouse) [Term] id: MA:0000937 name: posterior septal complex (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002663 ! septal nuclear complex [Term] id: MA:0000943 name: temporal cortex association area (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: MA:0000965 name: lateral ventricle subependymal layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: MA:0001032 name: vestibular VIII nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0006331 ! brainstem nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: MA:0001033 name: accessory XI nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0006331 ! brainstem nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: MA:0001041 name: inferior olive beta subnucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002127 ! inferior olivary complex [Term] id: MA:0001042 name: inferior olive dorsal accessory nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002127 ! inferior olivary complex [Term] id: MA:0001043 name: inferior olive inferior nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002127 ! inferior olivary complex [Term] id: MA:0001044 name: inferior olive medial accessory nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002127 ! inferior olivary complex [Term] id: MA:0001056 name: crura cerebri (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0002741 ! brainstem white matter (mouse) relationship: part_of UBERON:0001891 ! midbrain [Term] id: MA:0001070 name: nucleus related to visual cortex (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: MA:0001102 name: trigeminal V nerve lingual branch (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000375 ! mandibular nerve [Term] id: MA:0001107 name: vagus X nerve left recurrent laryngeal branch (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001759 ! vagus nerve [Term] id: MA:0001108 name: vagus X nerve right recurrent laryngeal branch (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001759 ! vagus nerve [Term] id: MA:0001118 name: spinal cord central grey (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: MA:0001120 name: spinal cord basal nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: MA:0001122 name: spinal cord marginal zone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: MA:0001126 name: spinal cord intermediate grey (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: MA:0001127 name: spinal cord central cervical nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0001126 ! spinal cord intermediate grey (mouse) [Term] id: MA:0001128 name: spinal cord dorsal commissural nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0001126 ! spinal cord intermediate grey (mouse) [Term] id: MA:0001129 name: spinal cord lateral motor column (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002240 ! spinal cord [Term] id: MA:0001145 name: enteric nerve (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: MA:0001146 name: cholinergic enteric nerve (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001145 ! enteric nerve (mouse) [Term] id: MA:0001147 name: intrinsic nerve plexus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001810 ! nerve plexus relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: MA:0001151 name: left vagus X nerve trunk (mouse) namespace: adult_mouse_anatomy.gxd synonym: "anterior vagus X nerve trunk" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0003535 ! vagus X nerve trunk [Term] id: MA:0001152 name: right vagus X nerve trunk (mouse) namespace: adult_mouse_anatomy.gxd synonym: "posterior vagus X nerve trunk" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0003535 ! vagus X nerve trunk [Term] id: MA:0001160 name: sympathetic nerve plexus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001810 ! nerve plexus relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: MA:0001164 name: pelvic sympathetic nerve trunk (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004295 ! sympathetic nerve trunk [Term] id: MA:0001179 name: segmental spinal nerve trunk (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: MA:0001226 name: auricular blood vessel (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001757 ! pinna [Term] id: MA:0001244 name: corneal nerves (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000964 ! cornea [Term] id: MA:0001253 name: eyelid submuscular connective tissue (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003581 ! eyelid connective tissue [Term] id: MA:0001268 name: ocular smooth muscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004277 ! eye muscle [Term] id: MA:0001284 name: tunica vasculosa plexus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0005607 ! hyaloid vascular plexus [Term] id: MA:0001327 name: septal olfactory organ (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001706 ! nasal septum [Term] id: MA:0001397 name: distal rib (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002228 ! rib [Term] id: MA:0001400 name: proximal rib (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002228 ! rib [Term] id: MA:0001408 name: rib 8 (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002228 ! rib [Term] id: MA:0001413 name: rib 13 (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002228 ! rib [Term] id: MA:0001414 name: rib dorsal segment (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002228 ! rib [Term] id: MA:0001418 name: rib ventral segment (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002228 ! rib [Term] id: MA:0001433 name: lumbar vertebra 6 (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002414 ! lumbar vertebra [Term] id: MA:0001445 name: thoracic vertebra 8 (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002347 ! thoracic vertebra [Term] id: MA:0001450 name: thoracic vertebra 13 (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002347 ! thoracic vertebra [Term] id: MA:0001471 name: pterygoid bone (mouse) namespace: adult_mouse_anatomy.gxd synonym: "inner plate of pterygoid process" RELATED [] is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0004649 ! sphenoid bone pterygoid process [Term] id: MA:0001488 name: mandible petrous part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001684 ! mandible [Term] id: MA:0001489 name: mandible squamous part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001684 ! mandible [Term] id: MA:0001503 name: postcranial synchondrosis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002215 ! synchondrosis [Term] id: MA:0001525 name: bowel wall (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000160 ! intestine [Term] id: MA:0001528 name: anal canal caudal part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000159 ! anal canal [Term] id: MA:0001529 name: anal canal rostral part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000159 ! anal canal [Term] id: MA:0001533 name: anococcygeus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004231 ! anal region smooth muscle [Term] id: MA:0001548 name: large intestine smooth muscle circular layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004220 ! large intestine smooth muscle [Term] id: MA:0001549 name: large intestine smooth muscle longitudinal layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004220 ! large intestine smooth muscle [Term] id: MA:0001560 name: small intestine smooth muscle circular layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004239 ! small intestine smooth muscle [Term] id: MA:0001561 name: small intestine smooth muscle longitudinal layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004239 ! small intestine smooth muscle [Term] id: MA:0001566 name: esophagus basal epithelium (mouse) namespace: adult_mouse_anatomy.gxd synonym: "basal oesophageal epithelium" RELATED [] is_a: UBERON:0001976 ! epithelium of esophagus [Term] id: MA:0001608 name: stomach blind ventricular sac (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0009034 ! stomach region [Term] id: MA:0001613 name: stomach glandular region (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0009034 ! stomach region [Term] id: MA:0001625 name: stomach proventricular region (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0009034 ! stomach region [Term] id: MA:0001647 name: area cribosa (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0005167 ! papillary duct [Term] id: MA:0001661 name: glomerular juxtacapillary capsular wall (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001230 ! glomerular capsule [Term] id: MA:0001662 name: glomerular outer capsular wall (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001230 ! glomerular capsule [Term] id: MA:0001663 name: juxtamedullary renal corpuscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001229 ! renal corpuscle relationship: part_of UBERON:0005271 ! juxtamedullary cortex [Term] id: MA:0001667 name: distal convoluted tubule convoluted part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] id: MA:0001670 name: proximal convoluted tubule neck (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001287 ! proximal convoluted tubule [Term] id: MA:0001671 name: proximal convoluted tubule convoluted part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001287 ! proximal convoluted tubule [Term] id: MA:0001672 name: proximal convoluted tubule straight part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001287 ! proximal convoluted tubule [Term] id: MA:0001673 name: distal convoluted tubule straight part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] id: MA:0001674 name: junctional tubule (mouse) namespace: adult_mouse_anatomy.gxd synonym: "connecting tubule" RELATED [] is_a: UBERON:0001231 ! nephron tubule [Term] id: MA:0001708 name: ovary growing follicle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001305 ! ovarian follicle [Term] id: MA:0001712 name: ovary theca (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000992 ! female gonad [Term] id: MA:0001802 name: respiratory system arterial smooth muscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: MA:0001812 name: respiratory system venous smooth muscle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel [Term] id: MA:0001815 name: respiratory system basement membrane (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0003570 ! respiratory system connective tissue [Term] id: MA:0001874 name: left ventricle membranous part (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001878 ! heart ventricle membranous part (mouse) relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: MA:0001875 name: left ventricle muscular part (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001879 ! heart ventricle muscular part (mouse) relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: MA:0001876 name: right ventricle membranous part (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001878 ! heart ventricle membranous part (mouse) relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: MA:0001877 name: right ventricle muscular part (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001879 ! heart ventricle muscular part (mouse) relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: MA:0001878 name: heart ventricle membranous part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: MA:0001879 name: heart ventricle muscular part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: MA:0001881 name: outflow tract pulmonary component distal part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0005339 ! outflow tract pulmonary component [Term] id: MA:0001882 name: outflow tract pulmonary component proximal part (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0005339 ! outflow tract pulmonary component [Term] id: MA:0001889 name: adrenal gland brown degeneration zone (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0009753 ! adrenal gland cortex zone [Term] id: MA:0001893 name: auchene hair (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001897 ! pelage hair (mouse) [Term] id: MA:0001894 name: awl hair (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001897 ! pelage hair (mouse) [Term] id: MA:0001895 name: duvet hair (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001037 ! strand of hair [Term] id: MA:0001896 name: guard hair (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001897 ! pelage hair (mouse) [Term] id: MA:0001897 name: pelage hair (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001037 ! strand of hair [Term] id: MA:0001898 name: zigzag hair (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001897 ! pelage hair (mouse) [Term] id: MA:0001937 name: cervical trunk (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0001952 name: medial femoral artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002060 ! femoral artery [Term] id: MA:0001960 name: frontal artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0001983 name: internal spermatic artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0001986 name: kidney subcortical arteries (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0001990 name: lieno-gastric artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0001994 name: maternal placental artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002000 name: median artery palmar branch (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0002249 ! median artery [Term] id: MA:0002006 name: middle caudal artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002010 name: ocular angle artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002016 name: pericardiacoophrenic artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002020 name: pial artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002030 name: pudic-epigastric trunk (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002039 name: saphenous artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002051 name: superficial antebrachial artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002053 name: superficial radial artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002059 name: external sural artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001390 ! sural artery [Term] id: MA:0002060 name: superficial sural artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001390 ! sural artery [Term] id: MA:0002070 name: ulnar artery palmar branch (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001406 ! ulnar artery [Term] id: MA:0002071 name: ulnar collateral artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002073 name: upper intercostal artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002075 name: ventral intercostal artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002076 name: ventral nasal artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001637 ! artery [Term] id: MA:0002082 name: anastomotic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002089 name: buccal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002102 name: dorsal cerebellar vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002104 name: dorsal intercostal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002106 name: dorsal nasal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002107 name: dorsal penis vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002108 name: dorsal spinal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002109 name: dorsal vena of penis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002112 name: duodenal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002116 name: anterior facial vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001653 ! facial vein [Term] id: MA:0002119 name: medial femoral vein (mouse) namespace: adult_mouse_anatomy.gxd alt_id: MA:0002170 is_a: UBERON:0001361 ! femoral vein [Term] id: MA:0002122 name: digital torus vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004563 ! forelimb digital vein [Term] id: MA:0002123 name: forelimb common dorsal digital vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004563 ! forelimb digital vein [Term] id: MA:0002124 name: forelimb proper dorsal digital vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004563 ! forelimb digital vein [Term] id: MA:0002125 name: lateral dorsal digital vein 05 (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004563 ! forelimb digital vein [Term] id: MA:0002129 name: gastroepiploic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002136 name: hindlimb common dorsal digital vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004564 ! hindlimb digital vein [Term] id: MA:0002137 name: hindlimb proper dorsal digital vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004564 ! hindlimb digital vein [Term] id: MA:0002139 name: hypogastric vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002148 name: internal mammary vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002149 name: internal spermatic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002150 name: left internal spermatic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0002149 ! internal spermatic vein (mouse) [Term] id: MA:0002151 name: right internal spermatic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0002149 ! internal spermatic vein (mouse) [Term] id: MA:0002152 name: ischiatic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002158 name: kidney subcortical veins (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002159 name: lateral caudal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002163 name: left hepatico-cardiac vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002164 name: lienal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002165 name: lieno-pancreatic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002166 name: linguofacial vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002168 name: maternal placental vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002174 name: medial tarsal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002175 name: median vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002180 name: middle caudal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002184 name: ocular angle vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002185 name: ophthalmic plexus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002191 name: inferior pancreatico-duodenal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004690 ! pancreatico-duodenal vein [Term] id: MA:0002192 name: superior pancreatico-duodenal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0004690 ! pancreatico-duodenal vein [Term] id: MA:0002194 name: phrenic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002196 name: pial vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002201 name: proximal caudal femoral vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002205 name: pudendoepigastric vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002209 name: right hepatico-cardiac vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002214 name: rostral auricular vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002225 name: superficial cervical vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002226 name: superior intercostal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002230 name: inferior suprarenal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001146 ! suprarenal vein [Term] id: MA:0002232 name: external sural vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001551 ! sural vein [Term] id: MA:0002236 name: external thoracic vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0005194 ! thoracic vein [Term] id: MA:0002243 name: tibial vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002248 name: ulnar collateral vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002256 name: vein of vesicular gland (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002258 name: ventral auricular vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002259 name: ventral intercostal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002261 name: ventral nasal vein (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001638 ! vein [Term] id: MA:0002273 name: bulboglandular (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002274 name: cleidobrachial (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002275 name: cleidocephalic (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002276 name: cleidooccipital (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002281 name: constrictor vulvae (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002283 name: cricoarytenoid (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002285 name: cutaneous trunci (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002322 name: iliothoracic (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002328 name: intrinsic tongue muscle transverse component (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001576 ! intrinsic muscle of tongue [Term] id: MA:0002329 name: intrinsic tongue muscle vertical component (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001576 ! intrinsic muscle of tongue [Term] id: MA:0002334 name: levator nasolabialis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002335 name: longissimus atlantis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002338 name: longissimus lumborum (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002342 name: lumbosacrocaudalis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002349 name: omotransverse (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002352 name: parotidoauricular (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002366 name: rectus thoracis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002380 name: sphincter colli superficialis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002385 name: sternooccipital (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002401 name: urethralis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002404 name: zygomaticus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002421 name: pancreatic islet mantle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000006 ! islet of Langerhans [Term] id: MA:0002449 name: heart/pericardium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0005178 ! thoracic cavity organ [Term] id: MA:0002456 name: septal coronary artery (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001621 ! coronary artery [Term] id: MA:0002486 name: eye surface (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: MA:0002548 name: inguinal fat pad (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003916 ! fat pad [Term] id: MA:0002549 name: retroperitoneal fat pad (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003916 ! fat pad [Term] id: MA:0002550 name: epididymal fat pad (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003916 ! fat pad [Term] id: MA:0002581 name: rest of afferent arteriole (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004639 ! afferent arteriole [Term] id: MA:0002622 name: kidney subcapsular mesenchyme (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0005215 ! kidney interstitium [Term] id: MA:0002624 name: loop of henle bend (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001288 ! loop of Henle relationship: part_of UBERON:0003455 ! inner renal medulla loop of henle [Term] id: MA:0002638 name: female membranous urethra (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001334 ! female urethra relationship: part_of UBERON:0001336 ! membranous urethra [Term] id: MA:0002641 name: male membranous urethra (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001333 ! male urethra relationship: part_of UBERON:0001336 ! membranous urethra [Term] id: MA:0002642 name: male urethra ostium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001333 ! male urethra [Term] id: MA:0002644 name: penile urethra cavernous portion (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001337 ! spongiose part of urethra [Term] id: MA:0002645 name: penile urethra fossa terminalis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001337 ! spongiose part of urethra [Term] id: MA:0002648 name: urethra mesenchymal layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000057 ! urethra [Term] id: MA:0002651 name: rest of ureter (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000056 ! ureter [Term] id: MA:0002656 name: ureter luminal urothelium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001254 ! urothelium of ureter [Term] id: MA:0002657 name: ureter subluminal urothelium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001254 ! urothelium of ureter [Term] id: MA:0002658 name: ureteral valve (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000056 ! ureter [Term] id: MA:0002663 name: intrahepatic part of left hepatic duct (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001177 ! left hepatic duct relationship: part_of UBERON:0005605 ! hepatic duct intrahepatic part [Term] id: MA:0002664 name: intrahepatic part of right hepatic duct (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001176 ! right hepatic duct relationship: part_of UBERON:0005605 ! hepatic duct intrahepatic part [Term] id: MA:0002665 name: hilar part of hepatic duct (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0005604 ! hepatic duct extrahepatic part [Term] id: MA:0002666 name: hilar part of left hepatic duct (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0002665 ! hilar part of hepatic duct (mouse) relationship: part_of UBERON:0001177 ! left hepatic duct [Term] id: MA:0002667 name: hilar part of right hepatic duct (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0002665 ! hilar part of hepatic duct (mouse) relationship: part_of UBERON:0001176 ! right hepatic duct [Term] id: MA:0002712 name: barrel cortex (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0008933 ! primary somatosensory cortex [Term] id: MA:0002732 name: endometrium glandular epithelium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004811 ! endometrium epithelium [Term] id: MA:0002733 name: endometrium luminal epithelium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004811 ! endometrium epithelium [Term] id: MA:0002735 name: myometrium inner circular layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001296 ! myometrium [Term] id: MA:0002736 name: myometrium outer longitudinal layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001296 ! myometrium [Term] id: MA:0002741 name: brainstem white matter (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0002298 ! brainstem [Term] id: MA:0002752 name: nucleus approprius (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: MA:0002756 name: lateral spinal nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001120 ! spinal cord basal nucleus (mouse) [Term] id: MA:0002758 name: levator auris longus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001630 ! muscle organ [Term] id: MA:0002766 name: accessory olfactory bulb mitral cell layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004069 ! accessory olfactory bulb [Term] id: MA:0002851 name: lymph node B cell domain (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000029 ! lymph node [Term] id: MA:0002852 name: lymph node T cell domain (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000029 ! lymph node [Term] id: MA:0002862 name: external elastic membrane (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003614 ! blood vessel elastic tissue relationship: part_of UBERON:0002522 ! tunica media [Term] id: MA:0002863 name: internal elastic membrane (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003614 ! blood vessel elastic tissue relationship: part_of UBERON:0002523 ! tunica intima [Term] id: MA:0002867 name: urethral opening (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: MA:0002884 name: sciatic lymph node (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0000029 ! lymph node [Term] id: MA:0002887 name: set of connective tissues (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0000467 ! anatomical system [Term] id: MA:0002890 name: septal organ of Masera (mouse) namespace: adult_mouse_anatomy.gxd is_a: MA:0001327 ! septal olfactory organ (mouse) [Term] id: MA:0002891 name: septal organ of Gruneberg (mouse) namespace: adult_mouse_anatomy.gxd synonym: "Gruneberg ganglion" RELATED [] is_a: MA:0001327 ! septal olfactory organ (mouse) [Term] id: MA:0002894 name: ventral posterior lateral thalamic nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of MA:0000867 ! ventral posterior thalamic group (mouse) [Term] id: MA:0002910 name: vibrissa follicle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0006378 ! vibrissa [Term] id: MA:0002917 name: amygdalahippocampal area (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001876 ! amygdala [Term] id: MA:0002918 name: amygdaloppiriform transition area (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001876 ! amygdala [Term] id: MA:0002920 name: anterior cortical amydaloid nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001876 ! amygdala [Term] id: MA:0002928 name: posterior amygdaloid nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001876 ! amygdala [Term] id: MA:0002929 name: posterolateral cortical amygdaloid nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001876 ! amygdala [Term] id: MA:0002930 name: posteromedial cortical amygdaloid nucleus (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001876 ! amygdala [Term] id: MA:0002932 name: accessory olfactory bulb external plexiform layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004069 ! accessory olfactory bulb [Term] id: MA:0002933 name: accessory olfactory bulb granule cell layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004069 ! accessory olfactory bulb [Term] id: MA:0002934 name: accessory olfactory bulb internal plexiform layer (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004069 ! accessory olfactory bulb [Term] id: MA:0002938 name: lingual gland duct (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001837 ! duct of salivary gland [Term] id: MA:0002953 name: parametrial fat pad (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003916 ! fat pad [Term] id: MA:0002956 name: omental fat pad (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0003427 ! abdominal fat pad [Term] id: MA:0002990 name: lymph node follicular mantle (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue [Term] id: MA:0002994 name: malleus process brevis (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001689 ! malleus [Term] id: MA:0002995 name: kidney medulla tubule (mouse) namespace: adult_mouse_anatomy.gxd synonym: "medullary tubule" RELATED [] is_a: UBERON:0001231 ! nephron tubule relationship: part_of UBERON:0000362 ! renal medulla [Term] id: MA:0002998 name: nephrogenic interstitium (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0009871 ! nephrogenic zone [Term] id: MA:0002999 name: pretubular aggregate (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0009871 ! nephrogenic zone [Term] id: MA:0003003 name: spiral prominence (mouse) namespace: adult_mouse_anatomy.gxd is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: EHDAA2:0003139 name: fibre tract (embryonic human) namespace: anatomical_entity_ontology alt_id: AEO:0000139 def: "A group of demarcated axons that connects two neuronal domains." [AEO:JB] is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) [Term] id: GO:0000003 name: reproduction namespace: biological_process alt_id: GO:0019952 alt_id: GO:0050876 def: "The production by an organism of new individuals that contain some portion of their genetic material inherited from that organism." [GOC:go_curators, GOC:isa_complete, ISBN:0198506732] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "reproductive physiological process" EXACT [] xref: Wikipedia:Reproduction is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000018 name: regulation of DNA recombination namespace: biological_process def: "Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents." [GOC:go_curators, ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0051052 ! regulation of DNA metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000087 name: M phase of mitotic cell cycle namespace: biological_process def: "M phase occurring as part of the mitotic cell cycle. M phase is the part of the cell cycle during which nuclear division takes place. A mitotic cell cycle is one which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells." [GOC:dph, GOC:mah, ISBN:0815316194] synonym: "M-phase of mitotic cell cycle" EXACT [] xref: Reactome:REACT_105412 xref: Reactome:REACT_107095 xref: Reactome:REACT_109059 xref: Reactome:REACT_29488 xref: Reactome:REACT_33490 xref: Reactome:REACT_82055 xref: Reactome:REACT_87132 xref: Reactome:REACT_88263 xref: Reactome:REACT_910 xref: Reactome:REACT_92998 xref: Reactome:REACT_93131 xref: Reactome:REACT_93566 xref: Reactome:REACT_93720 xref: Reactome:REACT_94536 is_a: GO:0000279 ! M phase relationship: part_of GO:0000278 ! mitotic cell cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000226 name: microtubule cytoskeleton organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins." [GOC:mah] synonym: "microtubule cytoskeleton organization and biogenesis" RELATED [GOC:mah] synonym: "microtubule dynamics" EXACT [GOC:dph, GOC:tb] is_a: GO:0007010 ! cytoskeleton organization is_a: GO:0007017 ! microtubule-based process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000271 name: polysaccharide biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "glycan biosynthesis" EXACT [] synonym: "glycan biosynthetic process" EXACT [] synonym: "polysaccharide anabolism" EXACT [] synonym: "polysaccharide biosynthesis" EXACT [] synonym: "polysaccharide formation" EXACT [] synonym: "polysaccharide synthesis" EXACT [] is_a: GO:0005976 ! polysaccharide metabolic process is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0016051 ! carbohydrate biosynthetic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000278 name: mitotic cell cycle namespace: biological_process def: "Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent." [GOC:mah, ISBN:0815316194, Reactome:69278] subset: goslim_yeast ! Yeast GO slim xref: Reactome:REACT_100451 xref: Reactome:REACT_104035 xref: Reactome:REACT_104195 xref: Reactome:REACT_105856 xref: Reactome:REACT_108233 xref: Reactome:REACT_152 xref: Reactome:REACT_28464 xref: Reactome:REACT_28953 xref: Reactome:REACT_33388 xref: Reactome:REACT_53493 xref: Reactome:REACT_79085 xref: Reactome:REACT_84794 xref: Reactome:REACT_85137 xref: Reactome:REACT_85950 xref: Reactome:REACT_90332 xref: Reactome:REACT_90846 xref: Reactome:REACT_96281 xref: Reactome:REACT_97744 xref: Reactome:REACT_98208 is_a: GO:0007049 ! cell cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000279 name: M phase namespace: biological_process def: "A cell cycle process comprising the steps by which a cell progresses through M phase, the part of the cell cycle comprising nuclear division." [GOC:dph, GOC:mah, ISBN:0815316194] synonym: "M-phase" EXACT [] xref: Wikipedia:M_phase is_a: GO:0022403 ! cell cycle phase property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000280 name: nuclear division namespace: biological_process def: "The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei." [GOC:mah] subset: goslim_pir ! PIR GO slim synonym: "karyokinesis" RELATED [] is_a: GO:0048285 ! organelle fission property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001501 name: skeletal system development namespace: biological_process def: "The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton)." [GOC:dph, GOC:jid, GOC:tb, http://www.stedmans.com/] synonym: "skeletal development" EXACT [] is_a: GO:0048731 ! system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001503 name: ossification namespace: biological_process def: "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance." [GOC:mtg_mpo, PMID:17572649] comment: Note that this term does not have a 'developmental process' parent because ossification isn't necessarily developmental, can also occur as part of bone remodeling. Instead use 'ossification involved in bone maturation ; GO:0043931'. synonym: "bone biosynthesis" EXACT [] synonym: "bone formation" EXACT [] synonym: "osteogenesis" EXACT [] xref: Wikipedia:Ossification is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001525 name: angiogenesis namespace: biological_process def: "Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels." [ISBN:0878932453] synonym: "blood vessel formation from pre-existing blood vessels" EXACT systematic_synonym [] xref: Wikipedia:Angiogenesis is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis relationship: part_of GO:0048514 ! blood vessel morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001568 name: blood vessel development namespace: biological_process def: "The process whose specific outcome is the progression of a blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood." [GOC:hjd, UBERON:0001981] is_a: GO:0048856 ! anatomical structure development relationship: part_of GO:0001944 ! vasculature development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001578 name: microtubule bundle formation namespace: biological_process def: "A process that results in a parallel arrangement of microtubules." [GOC:dph] synonym: "microtubule bundling" EXACT [] is_a: GO:0000226 ! microtubule cytoskeleton organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001649 name: osteoblast differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone." [CL:0000062, GOC:jid, GO_REF:0000034] synonym: "osteoblast cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0001503 ! ossification property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001667 name: ameboidal cell migration namespace: biological_process def: "Cell migration that is accomplished by extension and retraction of a pseudopodium." [GOC:dph] synonym: "ameboid cell migration" EXACT [] synonym: "amoeboid cell migration" EXACT [] synonym: "amoeboidal cell migration" EXACT [] is_a: GO:0016477 ! cell migration property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001675 name: acrosome assembly namespace: biological_process def: "The formation of the acrosome from the spermatid Golgi." [GOC:dph, GOC:hjd, GOC:tb] synonym: "acrosome formation" EXACT [GOC:dph, GOC:tb] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0010927 ! cellular component assembly involved in morphogenesis is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism relationship: part_of GO:0007286 ! spermatid development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001696 name: gastric acid secretion namespace: biological_process def: "The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion." [GOC:hjd] synonym: "hydrochloric acid secretion" NARROW [] is_a: GO:0022600 ! digestive system process is_a: GO:0046717 ! acid secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001763 name: morphogenesis of a branching structure namespace: biological_process def: "The process in which the anatomical structures of branches are generated and organized. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes." [ISBN:0721662544] synonym: "branching morphogenesis" EXACT [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001773 name: myeloid dendritic cell activation namespace: biological_process def: "The change in morphology and behavior of a dendritic cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735149] is_a: GO:0002274 ! myeloid leukocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001775 name: cell activation namespace: biological_process def: "A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand." [GOC:mgi_curators] subset: goslim_pir ! PIR GO slim is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001776 name: leukocyte homeostasis namespace: biological_process def: "The process of regulating the proliferation and elimination of cells of the immune system such that the total number of cells of a particular cell type within a whole or part of an organism is stable over time in the absence of an outside stimulus." [GOC:add, ISBN:0781735149] comment: Note that this term represents the return of immune system cell levels to stable numbers following an immune response as well as the proliferation and elimination of cells of the immune system required to maintain stable numbers in the absence of an outside stimulus. synonym: "immune cell homeostasis" EXACT [] synonym: "leucocyte homeostasis" EXACT [] is_a: GO:0002376 ! immune system process is_a: GO:0048872 ! homeostasis of number of cells property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001782 name: B cell homeostasis namespace: biological_process def: "The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus." [GOC:add, ISBN:0781735149, PMID:12956429] comment: Note that this term represents the return of B cell levels to stable numbers following an immune response as well as the proliferation and elimination of B cells required to maintain stable numbers in the absence of an outside stimulus. synonym: "B lymphocyte homeostasis" EXACT [] synonym: "B-cell homeostasis" EXACT [] synonym: "B-lymphocyte homeostasis" EXACT [] is_a: GO:0002260 ! lymphocyte homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001783 name: B cell apoptosis namespace: biological_process def: "The process of apoptosis in B cells." [GOC:add, ISBN:0781735149] synonym: "B cell programmed cell death by apoptosis" EXACT [] synonym: "B lymphocyte apoptosis" EXACT [] synonym: "B lymphocyte programmed cell death by apoptosis" EXACT [] synonym: "B-cell apoptosis" EXACT [] synonym: "B-cell programmed cell death by apoptosis" EXACT [] synonym: "B-lymphocyte apoptosis" EXACT [] synonym: "B-lymphocyte programmed cell death by apoptosis" EXACT [] synonym: "apoptosis of B cells" EXACT [] synonym: "apoptosis of B lymphocytes" EXACT [] synonym: "apoptosis of B-cells" EXACT [] synonym: "apoptosis of B-lymphocytes" EXACT [] synonym: "programmed cell death of B cells by apoptosis" EXACT [] synonym: "programmed cell death of B lymphocytes by apoptosis" EXACT [] synonym: "programmed cell death of B-cells by apoptosis" EXACT [] synonym: "programmed cell death of B-lymphocytes by apoptosis" EXACT [] synonym: "programmed cell death, B cells" EXACT [] synonym: "programmed cell death, B lymphocytes" EXACT [] synonym: "programmed cell death, B-cells" EXACT [] synonym: "programmed cell death, B-lymphocytes" EXACT [] is_a: GO:0070227 ! lymphocyte apoptosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001816 name: cytokine production namespace: biological_process def: "The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149] comment: Note that this term is intended for use when a gene product is seen to cause apparent increases in intracellular or extracellular cytokine levels, without specific regard as to whether the increase is due to increased biosynthesis, increased secretion of preexisting cytokine molecules, or increased conversion from precursor molecules. subset: goslim_pir ! PIR GO slim synonym: "interferon production" NARROW [GOC:add, GOC:mah] synonym: "interleukin production" NARROW [GOC:add, GOC:mah] is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001820 name: serotonin secretion namespace: biological_process def: "The regulated release of serotonin by a cell or group of cells. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells." [GOC:ef, ISBN:0198506732, ISBN:0781735149] synonym: "5-HT secretion" EXACT [] synonym: "5-hydroxytryptamine secretion" EXACT [] is_a: GO:0006837 ! serotonin transport is_a: GO:0023061 ! signal release is_a: GO:0032940 ! secretion by cell property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001838 name: embryonic epithelial tube formation namespace: biological_process def: "The morphogenesis of an embryonic epithelium into a tube-shaped structure." [GOC:dph, ISBN:0824072820] is_a: GO:0072175 ! epithelial tube formation relationship: part_of GO:0016331 ! morphogenesis of embryonic epithelium property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001841 name: neural tube formation namespace: biological_process alt_id: GO:0001679 def: "The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GOC:dph, ISBN:0878932437] synonym: "neural tube morphogenesis" EXACT [GOC:dph] synonym: "neurulation" EXACT [] xref: Wikipedia:Neurulation is_a: GO:0001838 ! embryonic epithelial tube formation relationship: part_of GO:0021915 ! neural tube development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001894 name: tissue homeostasis namespace: biological_process def: "A homeostatic process involved in the maintenance of an internal steady state within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function." [GOC:add, GOC:isa_complete] synonym: "tissue maintenance" NARROW [GOC:add] is_a: GO:0060249 ! anatomical structure homeostasis relationship: part_of GO:0048871 ! multicellular organismal homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001906 name: cell killing namespace: biological_process def: "Any process in an organism that results in the killing of its own cells or those of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." [GOC:add] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "necrosis" RELATED [] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001909 name: leukocyte mediated cytotoxicity namespace: biological_process def: "The directed killing of a target cell by a leukocyte." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149, PMID:11911826] comment: This term was improved by GO_REF:0000022. It was moved. Note that this term and its children describe contact-dependent killing of target cells by lymphocytes and myeloid cells of the immune system. synonym: "immune cell mediated cell death" EXACT [] synonym: "immune cell mediated cell killing" EXACT [] synonym: "immune cell mediated cytotoxicity" EXACT [] synonym: "leucocyte mediated cytotoxicity" EXACT [] is_a: GO:0001906 ! cell killing is_a: GO:0002252 ! immune effector process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001913 name: T cell mediated cytotoxicity namespace: biological_process def: "The directed killing of a target cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors." [GOC:add, ISBN:0781735149, PMID:11911826] comment: Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in the induction of apoptosis in the target cell. Note that both CD4 and CD8 positive T cells can mediate apoptosis of target cells, independently of their definition as 'helper' T cells or not. synonym: "T cell mediated apoptosis" EXACT [] synonym: "T cell mediated cell death" EXACT [] synonym: "T cell mediated cell killing" EXACT [] synonym: "T cell mediated cytolysis" RELATED [] synonym: "T lymphocyte mediated cytotoxicity" EXACT [] synonym: "T-cell mediated apoptosis" EXACT [] synonym: "T-cell mediated cell death" EXACT [] synonym: "T-cell mediated cell killing" EXACT [] synonym: "T-cell mediated cytotoxicity" EXACT [] synonym: "T-lymphocyte mediated cytotoxicity" EXACT [] is_a: GO:0001909 ! leukocyte mediated cytotoxicity is_a: GO:0002456 ! T cell mediated immunity is_a: GO:0006917 ! induction of apoptosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001942 name: hair follicle development namespace: biological_process alt_id: GO:0001943 def: "The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open." [GOC:dph, UBERON:0002073] is_a: GO:0008544 ! epidermis development is_a: GO:0022405 ! hair cycle process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001944 name: vasculature development namespace: biological_process def: "The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism." [GOC:dph, UBERON:0002409] synonym: "vascular system development" RELATED [GOC:curators] is_a: GO:0048731 ! system development relationship: part_of GO:0072358 ! cardiovascular system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001957 name: intramembranous ossification namespace: biological_process def: "Direct ossification that occurs within mesenchyme or an accumulation of relatively unspecialized cells." [ISBN:0878932437] comment: An instance of intramembranous ossification may also be classified as metaplastic; the former classifies based on tissue type location, and the latter based on mechanism/cell division. synonym: "dermal ossification" NARROW [GO_REF:0000034] xref: Wikipedia:Intramembranous_ossification is_a: GO:0036072 ! direct ossification property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001958 name: endochondral ossification namespace: biological_process def: "Replacement ossification wherein bone tissue replaces cartilage." [GO_REF:0000034, ISBN:0878932437] xref: Wikipedia:Endochondral_ossification is_a: GO:0036075 ! replacement ossification relationship: part_of GO:0060350 ! endochondral bone morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001974 name: blood vessel remodeling namespace: biological_process def: "The reorganization or renovation of existing blood vessels." [GOC:hjd] is_a: GO:0048771 ! tissue remodeling property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001976 name: neurological system process involved in regulation of systemic arterial blood pressure namespace: biological_process def: "The regulation of blood pressure mediated by detection of stimuli and a neurological response." [GOC:mtg_cardio, ISBN:0721643949] synonym: "blood pressure regulation by neurological process" EXACT [] synonym: "fast control of arterial pressure" RELATED [] synonym: "neurological process involved in regulation of systemic arterial blood pressure" EXACT [GOC:dph, GOC:tb] is_a: GO:0050877 ! neurological system process relationship: part_of GO:0003073 ! regulation of systemic arterial blood pressure property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001977 name: renal system process involved in regulation of blood volume namespace: biological_process def: "A slow mechanism of blood pressure regulation that responds to changes in pressure resulting from fluid and salt intake by modulating the quantity of blood in the circulatory system." [GOC:dph, GOC:tb, ISBN:0721643949] synonym: "renal blood volume control of blood pressure" RELATED [] synonym: "renal regulation of blood volume" RELATED [GOC:dph, GOC:tb] is_a: GO:0003071 ! renal system process involved in regulation of systemic arterial blood pressure relationship: part_of GO:0050878 ! regulation of body fluid levels property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001978 name: regulation of systemic arterial blood pressure by carotid sinus baroreceptor feedback namespace: biological_process def: "The process that modulates blood pressure by sensing the amount of stretch occurring in large arteries and responding to the input via central nervous system control." [GOC:dph, GOC:tb, ISBN:0721643949] synonym: "baroreceptor feedback control of blood pressure" RELATED [] synonym: "baroreceptor pressure buffer system" RELATED [ISBN:068340007X] synonym: "carotid sinus baroreceptor feedback regulation of systemic arterial blood pressure" EXACT [GOC:dph, GOC:tb] is_a: GO:0001976 ! neurological system process involved in regulation of systemic arterial blood pressure relationship: part_of GO:0003025 ! regulation of systemic arterial blood pressure by baroreceptor feedback property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001990 name: regulation of systemic arterial blood pressure by hormone namespace: biological_process def: "The process in which hormones modulate the force with which blood passes through the circulatory system. A hormone is one of a group of substances formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells, in the same organism, upon which they have a specific regulatory action." [GOC:mtg_cardio, ISBN:0721643949] synonym: "blood pressure regulation by hormone" EXACT [] synonym: "hormonal control of blood pressure" RELATED [] synonym: "hormonal regulation of blood pressure" EXACT [] is_a: GO:0003044 ! regulation of systemic arterial blood pressure mediated by a chemical signal is_a: GO:0050886 ! endocrine process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001992 name: regulation of systemic arterial blood pressure by vasopressin namespace: biological_process def: "The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport." [GOC:mtg_cardio, ISBN:0721643949] synonym: "blood pressure regulation by vasopressin" EXACT [] synonym: "vasopressin control of blood pressure" RELATED [] is_a: GO:0001990 ! regulation of systemic arterial blood pressure by hormone property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002009 name: morphogenesis of an epithelium namespace: biological_process def: "The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube." [GOC:dph, GOC:jl, GOC:tb, ISBN:0198506732] is_a: GO:0048729 ! tissue morphogenesis relationship: part_of GO:0060429 ! epithelium development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002027 name: regulation of heart rate namespace: biological_process def: "Any process that modulates the frequency or rate of heart contraction." [GOC:dph, GOC:tb, PMID:10358008] synonym: "cardiac chronotropy" EXACT [GOC:dph, GOC:tb] synonym: "regulation of heart contraction rate" EXACT [] synonym: "regulation of rate of heart contraction" EXACT [] is_a: GO:0008016 ! regulation of heart contraction is_a: GO:0065008 ! regulation of biological quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002117 name: amphibian larval development namespace: biological_process def: "The process whose specific outcome is the progression of the amphibian larva over time, from its formation to the mature structure. Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form." [GOC:bf, GOC:go_curators, http://www.livingunderworld.org/biology/] is_a: GO:0002164 ! larval development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002119 name: nematode larval development namespace: biological_process def: "The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GOC:ems, GOC:kmv] is_a: GO:0002164 ! larval development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002164 name: larval development namespace: biological_process def: "The process whose specific outcome is the progression of the larva over time, from its formation to the mature structure. The larva is the early, immature form of an that at birth or hatching is fundamentally unlike its parent and must metamorphose before assuming the adult characters." [GOC:jid, ISBN:0877795088] is_a: GO:0009791 ! post-embryonic development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002165 name: instar larval or pupal development namespace: biological_process def: "The process whose specific outcome is the progression of the instar larva or pupa over time, from its formation to the mature structure. An example of this process is found in Drosophila melanogaster." [GOC:jid, GOC:mtg_sensu] is_a: GO:0009791 ! post-embryonic development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002168 name: instar larval development namespace: biological_process def: "The process whose specific outcome is the progression of the larva over time, from its formation to the mature structure. This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster." [GOC:bf, GOC:mtg_sensu] is_a: GO:0002164 ! larval development is_a: GO:0002165 ! instar larval or pupal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002200 name: somatic diversification of immune receptors namespace: biological_process def: "The somatic process allowing for the production of immune receptors whose specificity is not encoded in the germline genomic sequences." [GOC:add, ISBN:0781735149, PMID:16102575, PMID:16166509] comment: Note that this process covers somatic recombination, gene conversion, hypermutation, N-region addition, and alternate splicing processes of immune receptor diversification. is_a: GO:0002376 ! immune system process relationship: part_of GO:0002520 ! immune system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002204 name: somatic recombination of immunoglobulin genes involved in immune response namespace: biological_process def: "The process in which immunoglobulin genes are formed through recombination of the germline genetic elements, also known as immunoglobulin gene segments, within a single locus following the induction of and contributing to an immune response." [GOC:add, ISBN:0781735149] synonym: "somatic recombination of antibody genes during immune response" RELATED [] synonym: "somatic recombination of immunoglobulin genes during immune response" RELATED [GOC:dph] is_a: GO:0002208 ! somatic diversification of immunoglobulins involved in immune response is_a: GO:0016447 ! somatic recombination of immunoglobulin gene segments property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002208 name: somatic diversification of immunoglobulins involved in immune response namespace: biological_process def: "The somatic process that results in the generation of sequence diversity of immunoglobulins after induction, and contributes to an immune response." [GOC:add, ISBN:0781735149, PMID:14991701] synonym: "somatic diversification of antibodies during immune response" RELATED [] synonym: "somatic diversification of immunoglobulins during immune response" RELATED [GOC:dph] is_a: GO:0016445 ! somatic diversification of immunoglobulins relationship: part_of GO:0002381 ! immunoglobulin production involved in immunoglobulin mediated immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002215 name: defense response to nematode namespace: biological_process alt_id: GO:0002216 def: "A response to protect an organism from a directly detected or perceived external threat from a nematode or nematodes, which results in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." [GOC:add, PMID:11516579, PMID:14506883] synonym: "physiological defense response to nematode" EXACT [] is_a: GO:0006952 ! defense response is_a: GO:0009624 ! response to nematode property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002227 name: innate immune response in mucosa namespace: biological_process def: "Any process of the innate immune response that takes place in the mucosal tissues." [GOC:add, PMID:10719665, PMID:15971105] is_a: GO:0002385 ! mucosal immune response is_a: GO:0045087 ! innate immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002228 name: natural killer cell mediated immunity namespace: biological_process def: "The promotion of an immune response by natural killer cells through direct recognition of target cells or through the release of cytokines." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "NK cell mediated immunity" EXACT [] is_a: GO:0002449 ! lymphocyte mediated immunity is_a: GO:0045087 ! innate immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002244 name: hemopoietic progenitor cell differentiation namespace: biological_process def: "The process in which precursor cell type acquires the specialized features of a hemopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells." [GOC:add, ISBN:0781735149, PMID:16551251] synonym: "haematopoietic progenitor cell differentiation" EXACT [] synonym: "haemopoietic progenitor cell differentiation" EXACT [] synonym: "hematopoietic progenitor cell differentiation" RELATED [] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0030097 ! hemopoiesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002249 name: lymphocyte anergy namespace: biological_process def: "Any process contributing to lymphocyte anergy, a state of functional inactivation." [GOC:add] is_a: GO:0002507 ! tolerance induction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002250 name: adaptive immune response namespace: biological_process def: "An immune response based on directed amplification of specific receptors for antigen produced through a somatic diversification process, and allowing for enhanced response to subsequent exposures to the same antigen (immunological memory)." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "acquired immune response" EXACT [ISBN:068340007X] xref: Wikipedia:Adaptive_immune_system is_a: GO:0006955 ! immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002251 name: organ or tissue specific immune response namespace: biological_process def: "An immune response taking place in an organ or tissues such as the liver, brain, mucosa, or nervous system tissues." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022] comment: This term was added by GO_REF:0000022. synonym: "immune response in organ or tissue" EXACT [] is_a: GO:0006955 ! immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002252 name: immune effector process namespace: biological_process def: "Any process of the immune system that can potentially contribute to an immune response." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. is_a: GO:0002376 ! immune system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002260 name: lymphocyte homeostasis namespace: biological_process def: "The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus." [GOC:add, PMID:15826826, PMID:16319493, PMID:16551252, PMID:16551262] is_a: GO:0001776 ! leukocyte homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002263 name: cell activation involved in immune response namespace: biological_process def: "A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "cell activation during immune response" RELATED [GOC:tb] is_a: GO:0001775 ! cell activation is_a: GO:0002252 ! immune effector process relationship: part_of GO:0006955 ! immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002274 name: myeloid leukocyte activation namespace: biological_process def: "A change in the morphology or behavior of a myeloid leukocyte resulting from exposure to an activating factor such as a cellular or soluble ligand." [GOC:add, ISBN:0781735149] synonym: "myeloid leucocyte activation" EXACT [] is_a: GO:0045321 ! leukocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002285 name: lymphocyte activation involved in immune response namespace: biological_process def: "A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response." [GOC:add, ISBN:0781735149] synonym: "lymphocyte activation during immune response" RELATED [GOC:tb] is_a: GO:0002366 ! leukocyte activation involved in immune response is_a: GO:0046649 ! lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002286 name: T cell activation involved in immune response namespace: biological_process def: "The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response." [GOC:add, ISBN:0781735149] synonym: "T cell activation during immune response" RELATED [GOC:tb] synonym: "T lymphocyte activation during immune response" RELATED [] synonym: "T-cell activation during immune response" RELATED [] synonym: "T-lymphocyte activation during immune response" RELATED [] is_a: GO:0002285 ! lymphocyte activation involved in immune response is_a: GO:0042110 ! T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002287 name: alpha-beta T cell activation involved in immune response namespace: biological_process def: "The change in morphology and behavior of an alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response." [GOC:add, ISBN:0781735149] synonym: "alpha-beta T cell activation during immune response" RELATED [GOC:tb] synonym: "alpha-beta T lymphocyte activation during immune response" RELATED [] synonym: "alpha-beta T-cell activation during immune response" RELATED [] synonym: "alpha-beta T-lymphocyte activation during immune response" RELATED [] is_a: GO:0002286 ! T cell activation involved in immune response is_a: GO:0046631 ! alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002288 name: NK T cell activation involved in immune response namespace: biological_process def: "The change in morphology and behavior of a mature or immature natural killer T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response." [GOC:add, PMID:15771592] synonym: "NK T cell activation during immune response" RELATED [GOC:tb] synonym: "NK T lymphocyte activation during immune response" RELATED [] synonym: "NK T-cell activation during immune response" RELATED [] synonym: "NK T-lymphocyte activation during immune response" RELATED [] synonym: "natural killer T lymphocyte activation during immune response" RELATED [] synonym: "natural killer T-cell activation during immune response" RELATED [] synonym: "natural killer T-lymphocyte activation during immune response" RELATED [] is_a: GO:0002287 ! alpha-beta T cell activation involved in immune response is_a: GO:0051132 ! NK T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002292 name: T cell differentiation involved in immune response namespace: biological_process def: "The process in which an antigenically naive T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells." [GOC:add, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "T cell development involved in immune response" RELATED [GOC:add] synonym: "T cell differentiation during immune response" RELATED [GOC:tb] synonym: "T lymphocyte differentiation during immune response" RELATED [] synonym: "T-cell differentiation during immune response" RELATED [] synonym: "T-lymphocyte differentiation during immune response" RELATED [] is_a: GO:0002286 ! T cell activation involved in immune response is_a: GO:0030217 ! T cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002293 name: alpha-beta T cell differentiation involved in immune response namespace: biological_process def: "The process in which an antigenically naive alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell during an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells." [GOC:add, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "alpha-beta T cell development involved in immune response" RELATED [GOC:add] synonym: "alpha-beta T cell differentiation during immune response" RELATED [GOC:tb] synonym: "alpha-beta T lymphocyte differentiation during immune response" RELATED [] synonym: "alpha-beta T-cell differentiation during immune response" RELATED [] synonym: "alpha-beta T-lymphocyte differentiation during immune response" RELATED [] is_a: GO:0002287 ! alpha-beta T cell activation involved in immune response is_a: GO:0002292 ! T cell differentiation involved in immune response is_a: GO:0046632 ! alpha-beta T cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002294 name: CD4-positive, alpha-beta T cell differentiation involved in immune response namespace: biological_process def: "The process in which an antigenically naive CD4-positive, alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells." [GOC:add, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "CD4-positive, alpha-beta T cell development involved in immune response" RELATED [GOC:add] synonym: "CD4-positive, alpha-beta T cell differentiation during immune response" RELATED [GOC:tb] synonym: "CD4-positive, alpha-beta T lymphocyte differentiation during immune response" RELATED [] synonym: "CD4-positive, alpha-beta T-cell differentiation during immune response" RELATED [] synonym: "CD4-positive, alpha-beta T-lymphocyte differentiation during immune response" RELATED [] is_a: GO:0002293 ! alpha-beta T cell differentiation involved in immune response is_a: GO:0043367 ! CD4-positive, alpha-beta T cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002312 name: B cell activation involved in immune response namespace: biological_process def: "The change in morphology and behavior of a mature or immature B cell during an immune response, resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [GOC:jal] synonym: "B cell activation during immune response" RELATED [GOC:tb] synonym: "B lymphocyte activation during immune response" RELATED [] synonym: "B-cell activation during immune response" RELATED [] synonym: "B-lymphocyte activation during immune response" RELATED [] is_a: GO:0002285 ! lymphocyte activation involved in immune response is_a: GO:0042113 ! B cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002313 name: mature B cell differentiation involved in immune response namespace: biological_process def: "The process in which a naive B cell acquires the specialized features of a mature or memory B cell during an immune response." [GOC:jal] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "mature B cell development involved in immune response" RELATED [GOC:add] synonym: "mature B cell differentiation during immune response" RELATED [GOC:tb] synonym: "mature B lymphocyte differentiation during immune response" RELATED [] synonym: "mature B-cell differentiation during immune response" RELATED [] synonym: "mature B-lymphocyte differentiation during immune response" RELATED [] is_a: GO:0002312 ! B cell activation involved in immune response is_a: GO:0002335 ! mature B cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002314 name: germinal center B cell differentiation namespace: biological_process def: "The process in which a B cell in the spleen acquires the specialized features of a germinal center B cell. Germinal center B cells are rapidly cycling B cells which have downregulated IgD expression and exhibit high levels of binding by peanut agglutinin (PNA)." [GOC:jal, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "germinal center B cell development" RELATED [GOC:add] synonym: "germinal center B lymphocyte differentiation" EXACT [] synonym: "germinal center B-cell differentiation" EXACT [] synonym: "germinal center B-lymphocyte differentiation" EXACT [] is_a: GO:0002313 ! mature B cell differentiation involved in immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002319 name: memory B cell differentiation namespace: biological_process def: "The process in which a B cell acquires the specialized features of a memory B cell. Memory B cells are cells that can respond rapidly to antigen re-exposure by production of high-affinity antibody." [GOC:jal, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "memory B cell development" RELATED [GOC:add] synonym: "memory B lymphocyte differentiation" EXACT [] synonym: "memory B-cell differentiation" EXACT [] synonym: "memory B-lymphocyte differentiation" EXACT [] is_a: GO:0002313 ! mature B cell differentiation involved in immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002335 name: mature B cell differentiation namespace: biological_process def: "The process in which transitional stage B cells acquire the specialized features of mature B cells in the spleen." [GOC:jal, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "mature B lymphocyte differentiation" EXACT [] synonym: "mature B-cell differentiation" EXACT [] synonym: "mature B-lymphocyte differentiation" EXACT [] synonym: "mature cell development" RELATED [GOC:add] is_a: GO:0030183 ! B cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002339 name: B cell selection namespace: biological_process def: "The process dependent upon B cell antigen receptor signaling in response to self or foreign antigen through which B cells are selected for survival." [GOC:jal] synonym: "B lymphocyte selection" EXACT [] synonym: "B-cell selection" EXACT [] synonym: "B-lymphocyte selection" EXACT [] is_a: GO:0002376 ! immune system process relationship: part_of GO:0030183 ! B cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002343 name: peripheral B cell selection namespace: biological_process def: "Any B cell selection process that occurs in the periphery." [GOC:jal] synonym: "peripheral B lymphocyte selection" EXACT [] synonym: "peripheral B-cell selection" EXACT [] synonym: "peripheral B-lymphocyte selection" EXACT [] is_a: GO:0002339 ! B cell selection property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002344 name: B cell affinity maturation namespace: biological_process def: "The process in which B cells produce antibodies with increased antigen affinity. This is accomplished by somatic hypermutation and selection for B cells which produce higher affinity antibodies to antigen." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "B lymphocyte affinity maturation" EXACT [] synonym: "B-cell affinity maturation" EXACT [] synonym: "B-lymphocyte affinity maturation" EXACT [] is_a: GO:0002343 ! peripheral B cell selection relationship: part_of GO:0002381 ! immunoglobulin production involved in immunoglobulin mediated immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002349 name: histamine production involved in inflammatory response namespace: biological_process def: "The synthesis or release of histamine following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149, PMID:16730260] synonym: "histamine production involved in acute inflammatory response" BROAD [] is_a: GO:0002532 ! production of molecular mediator involved in inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002351 name: serotonin production involved in inflammatory response namespace: biological_process def: "The synthesis or release of serotonin following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149, PMID:16730260] synonym: "serotonin production involved in acute inflammatory response" BROAD [] is_a: GO:0002532 ! production of molecular mediator involved in inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002366 name: leukocyte activation involved in immune response namespace: biological_process def: "A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response." [GOC:add, ISBN:0781735149] synonym: "immune cell activation during immune response" RELATED [] synonym: "leucocyte activation during immune response" RELATED [] synonym: "leukocyte activation during immune response" RELATED [GOC:tb] is_a: GO:0002263 ! cell activation involved in immune response is_a: GO:0045321 ! leukocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002367 name: cytokine production involved in immune response namespace: biological_process def: "The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus contributing to an immune response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. Note that this term is intended for use when a gene product is seen to cause apparent increases in intracellular or extracellular cytokine levels, without specific regard as to whether the increase is due to increased biosynthesis, increased secretion of preexisting cytokine molecules, or increased conversion from precursor molecules. synonym: "cytokine production during immune response" RELATED [GOC:dph] is_a: GO:0001816 ! cytokine production is_a: GO:0002440 ! production of molecular mediator of immune response relationship: part_of GO:0006955 ! immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002369 name: T cell cytokine production namespace: biological_process def: "Any process that contributes to cytokine production by a T cell." [GOC:add, ISBN:0781735149] synonym: "T lymphocyte cytokine production" EXACT [] synonym: "T-cell cytokine production" EXACT [] synonym: "T-lymphocyte cytokine production" EXACT [] is_a: GO:0002367 ! cytokine production involved in immune response is_a: GO:0002456 ! T cell mediated immunity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002376 name: immune system process namespace: biological_process def: "Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022] comment: Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). This term was added by GO_REF:0000022. subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim xref: Wikipedia:Immune_system is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002377 name: immunoglobulin production namespace: biological_process def: "The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149] synonym: "antibody production" EXACT [] is_a: GO:0002440 ! production of molecular mediator of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002381 name: immunoglobulin production involved in immunoglobulin mediated immune response namespace: biological_process def: "The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus during an immune response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149] synonym: "antibody production during immune response" RELATED [] synonym: "immunoglobulin production during immune response" RELATED [GOC:dph] synonym: "immunoglobulin production involved in immune response" RELATED [GOC:dph] is_a: GO:0002377 ! immunoglobulin production relationship: part_of GO:0016064 ! immunoglobulin mediated immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002384 name: hepatic immune response namespace: biological_process def: "An immune response taking place in the liver." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. is_a: GO:0002251 ! organ or tissue specific immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002385 name: mucosal immune response namespace: biological_process def: "An immune response taking place in mucosal tissues, including those of the intestinal tract, nasal and upper respiratory tract, and genital tract." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. is_a: GO:0002251 ! organ or tissue specific immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002386 name: immune response in mucosal-associated lymphoid tissue namespace: biological_process def: "Immune response taking place in the mucosal-associated lymphoid tissue (MALT). Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes." [GOC:jal, ISBN:0781735149] synonym: "immune response in MALT" EXACT [] is_a: GO:0002385 ! mucosal immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002387 name: immune response in gut-associated lymphoid tissue namespace: biological_process def: "Immune response taking place in the gut-associated lymphoid tissue (GALT). GALT includes Peyer's patches, appendix, and solitary lymph nodules." [GOC:jal, ISBN:0781735149] synonym: "immune response in GALT" EXACT [] is_a: GO:0002386 ! immune response in mucosal-associated lymphoid tissue property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002395 name: immune response in nasopharyngeal-associated lymphoid tissue namespace: biological_process def: "An immune response taking place in the nasopharyngeal-associated lymphoid tissue (NALT). NALT includes the tonsils and adenoids." [GOC:jal, ISBN:0781735149] synonym: "immune response in NALT" EXACT [] is_a: GO:0002386 ! immune response in mucosal-associated lymphoid tissue property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002432 name: granuloma formation namespace: biological_process def: "The formation of nodular inflammatory lesions, usually small or granular, firm, persistent, well-structured, and containing compactly grouped T lymphocytes and modified phagocytes such as epithelioid cells, giant cells, and other macrophages. Granuloma formation represents a chronic inflammatory response initiated by various infectious and noninfectious agents. The center of a granuloma consists of fused macrophages, which can become necrotic." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:068340007X, ISBN:0721601464, ISBN:081533642X] comment: This term was added by GO_REF:0000022. is_a: GO:0002252 ! immune effector process relationship: part_of GO:0002544 ! chronic inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002440 name: production of molecular mediator of immune response namespace: biological_process def: "The synthesis or release of any molecular mediator of the immune response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "production of cellular mediator of immune response" RELATED [] is_a: GO:0002376 ! immune system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002443 name: leukocyte mediated immunity namespace: biological_process alt_id: GO:0019723 alt_id: GO:0042087 def: "Any process involved in the carrying out of an immune response by a leukocyte." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "cell-mediated immune response" RELATED [] synonym: "cellular immune response" RELATED [] synonym: "immune cell effector process" EXACT [] synonym: "immune cell mediated immunity" EXACT [] synonym: "leucocyte immune effector process" EXACT [] synonym: "leucocyte mediated immunity" EXACT [] synonym: "leukocyte immune effector process" EXACT [] is_a: GO:0002252 ! immune effector process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002449 name: lymphocyte mediated immunity namespace: biological_process def: "Any process involved in the carrying out of an immune response by a lymphocyte." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "cell-mediated immunity" BROAD [] synonym: "cellular immune response" BROAD [] is_a: GO:0002443 ! leukocyte mediated immunity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002456 name: T cell mediated immunity namespace: biological_process def: "Any process involved in the carrying out of an immune response by a T cell." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "T lymphocyte mediated immunity" EXACT [] synonym: "T-cell mediated immunity" EXACT [] synonym: "T-lymphocyte mediated immunity" EXACT [] synonym: "cell-mediated immunity" BROAD [] synonym: "cellular immune response" BROAD [] is_a: GO:0002449 ! lymphocyte mediated immunity is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002460 name: adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains namespace: biological_process def: "An immune response based on directed amplification of specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of germline gene segments encoding immunoglobulin superfamily domains, and allowing for enhanced responses upon subsequent exposures to the same antigen (immunological memory). Recombined receptors for antigen encoded by immunoglobulin superfamily domains include T cell receptors and immunoglobulins (antibodies). An example of this is the adaptive immune response found in Mus musculus." [GOC:add, GOC:mtg_sensu, ISBN:0781735149] is_a: GO:0002250 ! adaptive immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002461 name: tolerance induction dependent upon immune response namespace: biological_process def: "Tolerance induction dependent upon an immune response, typically a response by a mature T or B cell in the periphery resulting tolerance towards an antigen via induction of anergy, cellular deletion, or regulatory T cell activation." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. synonym: "immune response-dependent tolerance induction" EXACT [] is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains is_a: GO:0002507 ! tolerance induction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002465 name: peripheral tolerance induction namespace: biological_process def: "Tolerance induction in the peripheral lymphoid tissues: blood, lymph nodes, spleen, and mucosal-associated lymphoid tissues." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. is_a: GO:0002461 ! tolerance induction dependent upon immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002467 name: germinal center formation namespace: biological_process def: "The process in which germinal centers form. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:081533642X] comment: This term was added by GO_REF:0000022. is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002474 name: antigen processing and presentation of peptide antigen via MHC class I namespace: biological_process def: "The process in which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules." [GOC:add, ISBN:0781735149, PMID:15224092, PMID:15771591] synonym: "peptide antigen processing and presentation via MHC class I" EXACT [] xref: Reactome:REACT_110097 xref: Reactome:REACT_114442 xref: Reactome:REACT_75820 xref: Reactome:REACT_77569 xref: Reactome:REACT_83138 xref: Reactome:REACT_84092 xref: Reactome:REACT_86224 xref: Reactome:REACT_88020 xref: Reactome:REACT_90151 xref: Reactome:REACT_94042 is_a: GO:0048002 ! antigen processing and presentation of peptide antigen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002478 name: antigen processing and presentation of exogenous peptide antigen namespace: biological_process def: "The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC protein complex. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell." [GOC:add, ISBN:0781735149] synonym: "exogenous peptide antigen processing and presentation" EXACT [] is_a: GO:0019884 ! antigen processing and presentation of exogenous antigen is_a: GO:0048002 ! antigen processing and presentation of peptide antigen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002495 name: antigen processing and presentation of peptide antigen via MHC class II namespace: biological_process def: "The process in which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein." [GOC:add, ISBN:0781735149, PMID:15531770, PMID:15771591] synonym: "peptide antigen processing and presentation via MHC class II" EXACT [] is_a: GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II is_a: GO:0048002 ! antigen processing and presentation of peptide antigen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002504 name: antigen processing and presentation of peptide or polysaccharide antigen via MHC class II namespace: biological_process def: "The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex." [GOC:add, ISBN:0781735149, PMID:15531770, PMID:15771591, PMID:16153240] synonym: "peptide or polysaccharide antigen processing and presentation of via MHC class II" EXACT [] is_a: GO:0019882 ! antigen processing and presentation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002507 name: tolerance induction namespace: biological_process def: "A process that directly activates any of the steps required for tolerance, a physiologic state in which the immune system does not react destructively against the components of an organism that harbors it or against antigens that are introduced to it." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. is_a: GO:0002376 ! immune system process relationship: part_of GO:0002520 ! immune system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002514 name: B cell tolerance induction namespace: biological_process def: "A process involving any mechanism for tolerance induction in B cells." [GOC:jal, ISBN:0781735149, PMID:16460922] synonym: "B lymphocyte tolerance induction" EXACT [] synonym: "B-cell tolerance induction" EXACT [] synonym: "B-lymphocyte tolerance induction" EXACT [] is_a: GO:0002507 ! tolerance induction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002515 name: B cell anergy namespace: biological_process def: "Any process contributing to anergy in B cells, a state of functional inactivation which is part of B cell tolerance induction." [GOC:jal, ISBN:0781735149] synonym: "B lymphocyte anergy" EXACT [] synonym: "B-cell anergy" EXACT [] synonym: "B-lymphocyte anergy" EXACT [] is_a: GO:0002249 ! lymphocyte anergy is_a: GO:0002514 ! B cell tolerance induction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002520 name: immune system development namespace: biological_process def: "The process whose specific outcome is the progression of an organismal system whose objective is to provide calibrated responses by an organism to a potential internal or invasive threat, over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process." [GOC:add, GOC:dph] is_a: GO:0002376 ! immune system process is_a: GO:0048731 ! system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002521 name: leukocyte differentiation namespace: biological_process def: "The process in which a relatively unspecialized hemopoietic precursor cell acquires the specialized features of a leukocyte. A leukocyte is an achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue." [CL:0000738, GOC:add, PMID:16551264] synonym: "immune cell differentiation" EXACT [] synonym: "leucocyte differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0030097 ! hemopoiesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002532 name: production of molecular mediator involved in inflammatory response namespace: biological_process def: "The synthesis or release of any molecular mediator of the inflammatory response following an inflammatory stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:add, GOC:dph, GOC:tb, ISBN:0781735149] synonym: "production of cellular mediator of acute inflammation" RELATED [] synonym: "production of molecular mediator involved in acute inflammatory response" BROAD [] is_a: GO:0032501 ! multicellular organismal process relationship: part_of GO:0006954 ! inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002536 name: respiratory burst involved in inflammatory response namespace: biological_process def: "A phase of elevated metabolic activity, during which oxygen consumption increases following a stimulus as part of an inflammatory response; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals, resulting in an increase in their intracellular or extracellular levels." [GOC:add, ISBN:0781735149] synonym: "oxidative burst during acute inflammatory response " BROAD [] synonym: "production of reactive oxygen species during acute inflammatory response" BROAD [] synonym: "respiratory burst involved in acute inflammatory response" BROAD [] is_a: GO:0002532 ! production of molecular mediator involved in inflammatory response is_a: GO:0002679 ! respiratory burst involved in defense response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002537 name: nitric oxide production involved in inflammatory response namespace: biological_process def: "The synthesis or release of nitric oxide following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149] synonym: "nitric oxide production involved in acute inflammatory response" BROAD [GOC:mah] synonym: "production of nitric oxide involved in acute inflammatory response" BROAD [] synonym: "production of nitric oxide involved in inflammatory response" EXACT [GOC:curators] is_a: GO:0002532 ! production of molecular mediator involved in inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002538 name: arachidonic acid metabolite production involved in inflammatory response namespace: biological_process def: "The synthesis or release of products of arachidonic acid metabolism following a stimulus as part of an inflammatory response, resulting in an increase in their intracellular or extracellular levels." [GOC:add, ISBN:0781735149] synonym: "arachidonic acid metabolite production involved in acute inflammatory response" BROAD [GOC:mah] synonym: "production of arachidonic acid metabolites involved in acute inflammatory response" BROAD [] synonym: "production of arachidonic acid metabolites involved in inflammatory response" EXACT [GOC:curators] is_a: GO:0002532 ! production of molecular mediator involved in inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002539 name: prostaglandin production involved in inflammatory response namespace: biological_process def: "The synthesis or release of any prostaglandin following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149] synonym: "prostaglandin production involved in acute inflammatory response" BROAD [] is_a: GO:0002538 ! arachidonic acid metabolite production involved in inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002540 name: leukotriene production involved in inflammatory response namespace: biological_process def: "The synthesis or release of any leukotriene following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels." [GOC:add, ISBN:0781735149] synonym: "leukotriene production involved in acute inflammatory response" BROAD [] is_a: GO:0002538 ! arachidonic acid metabolite production involved in inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002544 name: chronic inflammatory response namespace: biological_process def: "Inflammation of prolonged duration (weeks or months) in which active inflammation, tissue destruction, and attempts at repair are proceeding simultaneously. Although it may follow acute inflammation, chronic inflammation frequently begins insidiously, as a low-grade, smoldering, often asymptomatic response." [GOC:jal, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was added by GO_REF:0000022. is_a: GO:0006954 ! inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002548 name: monocyte chemotaxis namespace: biological_process def: "The movement of a monocyte in response to an external stimulus." [GOC:add, PMID:11696603, PMID:15173832] is_a: GO:0030595 ! leukocyte chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002562 name: somatic diversification of immune receptors via germline recombination within a single locus namespace: biological_process def: "The process in which immune receptor genes are diversified through recombination of the germline genetic elements within a single genetic locus." [GOC:add, ISBN:0781735149, PMID:16102575, PMID:16166509] is_a: GO:0002200 ! somatic diversification of immune receptors is_a: GO:0016444 ! somatic cell DNA recombination property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002566 name: somatic diversification of immune receptors via somatic mutation namespace: biological_process def: "The process in which immune receptor genes are diversified through somatic mutation." [ISBN:0781735149, PMID:16102575] is_a: GO:0002200 ! somatic diversification of immune receptors property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002573 name: myeloid leukocyte differentiation namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte lineage." [GOC:add, PMID:16551251] synonym: "myeloid leucocyte differentiation" EXACT [] is_a: GO:0002521 ! leukocyte differentiation is_a: GO:0030099 ! myeloid cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002574 name: thrombocyte differentiation namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a thrombocyte, a nucleated cell found in all vertebrates but mammals involved in hemostasis." [GOC:add] comment: Note that platelets are the non-nucleated mammalian functional equivalent of the nucleated thrombocytes of non-mammalian vertebrates and are sometimes also referred to as thrombocytes. Platelet formation in mammals is covered by the biological_process term platelet formation ; GO:0030220. is_a: GO:0030099 ! myeloid cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002634 name: regulation of germinal center formation namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of germinal center formation." [GOC:add] is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002637 name: regulation of immunoglobulin production namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of immunoglobulin production." [GOC:add] is_a: GO:0002700 ! regulation of production of molecular mediator of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002643 name: regulation of tolerance induction namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of tolerance induction." [GOC:add] is_a: GO:0002682 ! regulation of immune system process is_a: GO:2000026 ! regulation of multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002645 name: positive regulation of tolerance induction namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of tolerance induction." [GOC:add] synonym: "activation of tolerance induction" NARROW [] synonym: "stimulation of tolerance induction" NARROW [] synonym: "up regulation of tolerance induction" EXACT [] synonym: "up-regulation of tolerance induction" EXACT [] synonym: "upregulation of tolerance induction" EXACT [] is_a: GO:0002643 ! regulation of tolerance induction is_a: GO:0002684 ! positive regulation of immune system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002652 name: regulation of tolerance induction dependent upon immune response namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of tolerance induction dependent upon immune response." [GOC:add] synonym: "regulation of immune response-dependent tolerance induction" EXACT [] is_a: GO:0002643 ! regulation of tolerance induction is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002654 name: positive regulation of tolerance induction dependent upon immune response namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of tolerance induction dependent upon immune response." [GOC:add] synonym: "activation of tolerance induction dependent upon immune response" NARROW [] synonym: "positive regulation of immune response-dependent tolerance induction" EXACT [] synonym: "stimulation of tolerance induction dependent upon immune response" NARROW [] synonym: "up regulation of tolerance induction dependent upon immune response" EXACT [] synonym: "up-regulation of tolerance induction dependent upon immune response" EXACT [] synonym: "upregulation of tolerance induction dependent upon immune response" EXACT [] is_a: GO:0002645 ! positive regulation of tolerance induction is_a: GO:0002652 ! regulation of tolerance induction dependent upon immune response is_a: GO:0002824 ! positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002658 name: regulation of peripheral tolerance induction namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of peripheral tolerance induction." [GOC:add] is_a: GO:0002652 ! regulation of tolerance induction dependent upon immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002660 name: positive regulation of peripheral tolerance induction namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of peripheral tolerance induction." [GOC:add] synonym: "activation of peripheral tolerance induction" NARROW [] synonym: "stimulation of peripheral tolerance induction" NARROW [] synonym: "up regulation of peripheral tolerance induction" EXACT [] synonym: "up-regulation of peripheral tolerance induction" EXACT [] synonym: "upregulation of peripheral tolerance induction" EXACT [] is_a: GO:0002654 ! positive regulation of tolerance induction dependent upon immune response is_a: GO:0002658 ! regulation of peripheral tolerance induction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002679 name: respiratory burst involved in defense response namespace: biological_process def: "A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals." [GOC:add, ISBN:0781735149, PMID:12789499] is_a: GO:0002252 ! immune effector process is_a: GO:0045730 ! respiratory burst relationship: part_of GO:0006952 ! defense response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002682 name: regulation of immune system process namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an immune system process." [GOC:add] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002683 name: negative regulation of immune system process namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune system process." [GOC:add] synonym: "down regulation of immune system process" EXACT [] synonym: "down-regulation of immune system process" EXACT [] synonym: "downregulation of immune system process" EXACT [] synonym: "inhibition of immune system process" NARROW [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048519 ! negative regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002684 name: positive regulation of immune system process namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of an immune system process." [GOC:add] synonym: "activation of immune system process" NARROW [] synonym: "stimulation of immune system process" NARROW [] synonym: "up regulation of immune system process" EXACT [] synonym: "up-regulation of immune system process" EXACT [] synonym: "upregulation of immune system process" EXACT [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048518 ! positive regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002685 name: regulation of leukocyte migration namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of leukocyte migration." [GOC:add] synonym: "regulation of immune cell migration" EXACT [] synonym: "regulation of leucocyte migration" EXACT [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0030334 ! regulation of cell migration property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002687 name: positive regulation of leukocyte migration namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of leukocyte migration." [GOC:add] synonym: "activation of leukocyte migration" NARROW [] synonym: "positive regulation of immune cell migration" EXACT [] synonym: "positive regulation of leucocyte migration" EXACT [] synonym: "stimulation of leukocyte migration" NARROW [] synonym: "up regulation of leukocyte migration" EXACT [] synonym: "up-regulation of leukocyte migration" EXACT [] synonym: "upregulation of leukocyte migration" EXACT [] is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0002685 ! regulation of leukocyte migration is_a: GO:0030335 ! positive regulation of cell migration property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002688 name: regulation of leukocyte chemotaxis namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of leukocyte chemotaxis." [GOC:add] synonym: "regulation of immune cell chemotaxis" EXACT [] synonym: "regulation of leucocyte chemotaxis" EXACT [] is_a: GO:0002685 ! regulation of leukocyte migration is_a: GO:0050920 ! regulation of chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002690 name: positive regulation of leukocyte chemotaxis namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of leukocyte chemotaxis." [GOC:add] synonym: "activation of leukocyte chemotaxis" NARROW [] synonym: "positive regulation of immune cell chemotaxis" EXACT [] synonym: "positive regulation of leucocyte chemotaxis" EXACT [] synonym: "stimulation of leukocyte chemotaxis" NARROW [] synonym: "up regulation of leukocyte chemotaxis" EXACT [] synonym: "up-regulation of leukocyte chemotaxis" EXACT [] synonym: "upregulation of leukocyte chemotaxis" EXACT [] is_a: GO:0002687 ! positive regulation of leukocyte migration is_a: GO:0002688 ! regulation of leukocyte chemotaxis is_a: GO:0050921 ! positive regulation of chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002694 name: regulation of leukocyte activation namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of leukocyte activation." [GOC:add] synonym: "regulation of immune cell activation" EXACT [] synonym: "regulation of leucocyte activation" EXACT [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0050865 ! regulation of cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002696 name: positive regulation of leukocyte activation namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of leukocyte activation." [GOC:add] synonym: "activation of leukocyte activation" NARROW [] synonym: "positive regulation of immune cell activation" EXACT [] synonym: "positive regulation of leucocyte activation" EXACT [] synonym: "stimulation of leukocyte activation" NARROW [] synonym: "up regulation of leukocyte activation" EXACT [] synonym: "up-regulation of leukocyte activation" EXACT [] synonym: "upregulation of leukocyte activation" EXACT [] is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0002694 ! regulation of leukocyte activation is_a: GO:0050867 ! positive regulation of cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002697 name: regulation of immune effector process namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an immune effector process." [GOC:add] is_a: GO:0002682 ! regulation of immune system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002699 name: positive regulation of immune effector process namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of an immune effector process." [GOC:add] synonym: "activation of immune effector process" NARROW [] synonym: "stimulation of immune effector process" NARROW [] synonym: "up regulation of immune effector process" EXACT [] synonym: "up-regulation of immune effector process" EXACT [] synonym: "upregulation of immune effector process" EXACT [] is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0002697 ! regulation of immune effector process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002700 name: regulation of production of molecular mediator of immune response namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of the production of molecular mediator of immune response." [GOC:add] is_a: GO:0002697 ! regulation of immune effector process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002703 name: regulation of leukocyte mediated immunity namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of leukocyte mediated immunity." [GOC:add] synonym: "regulation of immune cell mediated immunity" EXACT [] synonym: "regulation of leucocyte mediated immunity" EXACT [] is_a: GO:0002697 ! regulation of immune effector process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002706 name: regulation of lymphocyte mediated immunity namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of lymphocyte mediated immunity." [GOC:add] is_a: GO:0002703 ! regulation of leukocyte mediated immunity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002712 name: regulation of B cell mediated immunity namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of B cell mediated immunity." [GOC:add] synonym: "regulation of B lymphocyte mediated immunity" EXACT [] synonym: "regulation of B-cell mediated immunity" EXACT [] synonym: "regulation of B-lymphocyte mediated immunity" EXACT [] is_a: GO:0002706 ! regulation of lymphocyte mediated immunity is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002775 name: antimicrobial peptide production namespace: biological_process def: "The synthesis or release of an antimicrobial peptide during an immune response, resulting in an increase in intracellular or extracellular levels. Such peptides may have protective properties against bacteria, fungi, viruses, or protozoa." [GOC:add, ISBN:0781735149, PMID:11807545, PMID:15638771] is_a: GO:0002440 ! production of molecular mediator of immune response relationship: part_of GO:0019730 ! antimicrobial humoral response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002776 name: antimicrobial peptide secretion namespace: biological_process def: "The regulated release of an antimicrobial peptide from a cell or group of cells. Such peptides may have protective properties against bacteria, fungi, viruses, or protozoa." [GOC:add, ISBN:0781735149, PMID:11807545, PMID:15638771] is_a: GO:0002790 ! peptide secretion relationship: part_of GO:0002775 ! antimicrobial peptide production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002790 name: peptide secretion namespace: biological_process def: "The controlled release of a peptide from a cell or group of cells." [GOC:add] is_a: GO:0015833 ! peptide transport is_a: GO:0046903 ! secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002819 name: regulation of adaptive immune response namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an adaptive immune response." [GOC:add] is_a: GO:0050776 ! regulation of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002821 name: positive regulation of adaptive immune response namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of an adaptive immune response." [GOC:add] synonym: "activation of adaptive immune response" NARROW [] synonym: "stimulation of adaptive immune response" NARROW [] synonym: "up regulation of adaptive immune response" EXACT [] synonym: "up-regulation of adaptive immune response" EXACT [] synonym: "upregulation of adaptive immune response" EXACT [] is_a: GO:0002819 ! regulation of adaptive immune response is_a: GO:0050778 ! positive regulation of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002822 name: regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains. An example of this process is found in the Gnathostomata." [GOC:add, GOC:mtg_sensu] is_a: GO:0002819 ! regulation of adaptive immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002824 name: positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains. An example of this process is found in the Gnathostomata." [GOC:add, GOC:mtg_sensu] is_a: GO:0002821 ! positive regulation of adaptive immune response is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002825 name: regulation of T-helper 1 type immune response namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of a T-helper 1 type immune response." [GOC:add] is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002827 name: positive regulation of T-helper 1 type immune response namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of a T-helper 1 type immune response." [GOC:add] synonym: "activation of T-helper 1 type immune response" NARROW [] synonym: "stimulation of T-helper 1 type immune response" NARROW [] synonym: "up regulation of T-helper 1 type immune response" EXACT [] synonym: "up-regulation of T-helper 1 type immune response" EXACT [] synonym: "upregulation of T-helper 1 type immune response" EXACT [] is_a: GO:0002824 ! positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains is_a: GO:0002825 ! regulation of T-helper 1 type immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002828 name: regulation of type 2 immune response namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of a type 2 immune response." [GOC:add] synonym: "regulation of T-helper 2 type immune response" NARROW [GOC:add] synonym: "regulation of Th2 immune response" NARROW [GOC:add] is_a: GO:0050776 ! regulation of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002830 name: positive regulation of type 2 immune response namespace: biological_process def: "Any process that activates or increases the frequency, rate, or extent of a type 2 immune response." [GOC:add] synonym: "activation of type 2 immune response" NARROW [] synonym: "positive regulation of T-helper 2 type immune response" NARROW [GOC:add] synonym: "positive regulation of Th2 immune response" NARROW [GOC:add] synonym: "stimulation of type 2 immune response" NARROW [] synonym: "up regulation of type 2 immune response" EXACT [] synonym: "up-regulation of type 2 immune response" EXACT [] synonym: "upregulation of type 2 immune response" EXACT [] is_a: GO:0002828 ! regulation of type 2 immune response is_a: GO:0050778 ! positive regulation of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002889 name: regulation of immunoglobulin mediated immune response namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an immunoglobulin mediated immune response." [GOC:add] is_a: GO:0002712 ! regulation of B cell mediated immunity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002901 name: mature B cell apoptosis namespace: biological_process def: "The process of apoptosis in mature B cells." [GOC:add, ISBN:0781735149] synonym: "apoptosis of mature B cells" EXACT [] synonym: "apoptosis of mature B lymphocytes" EXACT [] synonym: "apoptosis of mature B-cells" EXACT [] synonym: "apoptosis of mature B-lymphocytes" EXACT [] synonym: "mature B cell programmed cell death by apoptosis" EXACT [] synonym: "mature B lymphocyte apoptosis" EXACT [] synonym: "mature B lymphocyte programmed cell death by apoptosis" EXACT [] synonym: "mature B-cell apoptosis" EXACT [] synonym: "mature B-cell programmed cell death by apoptosis" EXACT [] synonym: "mature B-lymphocyte apoptosis" EXACT [] synonym: "mature B-lymphocyte programmed cell death by apoptosis" EXACT [] synonym: "programmed cell death of mature B cells by apoptosis" EXACT [] synonym: "programmed cell death of mature B lymphocytes by apoptosis" EXACT [] synonym: "programmed cell death of mature B-cells by apoptosis" EXACT [] synonym: "programmed cell death of mature B-lymphocytes by apoptosis" EXACT [] synonym: "programmed cell death, mature B cells" EXACT [] synonym: "programmed cell death, mature B lymphocytes" EXACT [] synonym: "programmed cell death, mature B-cells" EXACT [] synonym: "programmed cell death, mature B-lymphocytes" EXACT [] is_a: GO:0001783 ! B cell apoptosis relationship: part_of GO:0001782 ! B cell homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002902 name: regulation of B cell apoptosis namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of B cell apoptosis." [GOC:add] is_a: GO:0070228 ! regulation of lymphocyte apoptosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0002905 name: regulation of mature B cell apoptosis namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of mature B cell apoptosis." [GOC:add] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0002902 ! regulation of B cell apoptosis is_a: GO:0032844 ! regulation of homeostatic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003001 name: generation of a signal involved in cell-cell signaling namespace: biological_process def: "The cellular process that creates a physical entity or change in state, i.e. a signal, that originates in one cell and is used to transfer information to another cell. This process begins with the initial formation of the signal and ends with the mature form and placement of the signal." [GOC:dph] synonym: "formation of a signal" BROAD [] synonym: "generation of a signal involved in cell-cell signalling" EXACT [] synonym: "signal generation" BROAD [] is_a: GO:0009987 ! cellular process relationship: part_of GO:0007267 ! cell-cell signaling property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003006 name: developmental process involved in reproduction namespace: biological_process def: "A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring." [GOC:dph, GOC:isa_complete] synonym: "reproductive developmental process" RELATED [GOC:dph, GOC:tb] is_a: GO:0022414 ! reproductive process is_a: GO:0032502 ! developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003008 name: system process namespace: biological_process def: "A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective." [GOC:mtg_cardio] synonym: "organ system process" EXACT [] is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003012 name: muscle system process namespace: biological_process def: "A organ system process carried out at the level of a muscle. Muscle tissue is composed of contractile cells or fibers." [GOC:mtg_cardio] synonym: "muscle physiological process" RELATED [] is_a: GO:0003008 ! system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003013 name: circulatory system process namespace: biological_process def: "A organ system process carried out by any of the organs or tissues of the circulatory system. The circulatory system is an organ system that moves extracellular fluids to and from tissue within a multicellular organism." [GOC:mtg_cardio] subset: goslim_generic ! Generic GO slim xref: Wikipedia:Circulatory_system is_a: GO:0003008 ! system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003014 name: renal system process namespace: biological_process def: "A organ system process carried out by any of the organs or tissues of the renal system. The renal system is responsible for fluid volume regulation and detoxification in an organism." [GOC:cjm, GOC:mtg_cardio] synonym: "excretory system process" EXACT [] synonym: "kidney system process" RELATED [] is_a: GO:0003008 ! system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003015 name: heart process namespace: biological_process def: "A circulatory system process carried out by the heart. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood." [GOC:mtg_cardio] synonym: "cardiac process" RELATED [] is_a: GO:0003013 ! circulatory system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003019 name: central nervous system control of baroreceptor feedback namespace: biological_process def: "The neurological process in which nerve impulses arising in the aorta or the carotid sinuses travel to the medulla and reach the nucleus of tractus solaris." [GOC:mtg_cardio, ISBN:0323031951] is_a: GO:0050877 ! neurological system process relationship: part_of GO:0001978 ! regulation of systemic arterial blood pressure by carotid sinus baroreceptor feedback property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003025 name: regulation of systemic arterial blood pressure by baroreceptor feedback namespace: biological_process def: "The neural regulation of blood pressure in which baroreceptors sense the amount of stretch occurring in vessels and respond to the input via central nervous system control." [GOC:dph, GOC:mtg_cardio, GOC:tb] synonym: "baroreceptor regulation of systemic arterial blood pressure" EXACT [GOC:dph, GOC:tb] is_a: GO:0001976 ! neurological system process involved in regulation of systemic arterial blood pressure property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003044 name: regulation of systemic arterial blood pressure mediated by a chemical signal namespace: biological_process def: "The regulation of blood pressure mediated by biochemical signaling: hormonal, autocrine or paracrine." [GOC:mtg_cardio] synonym: "blood pressure regulation mediated by a chemical signal" EXACT [] is_a: GO:0003073 ! regulation of systemic arterial blood pressure property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003071 name: renal system process involved in regulation of systemic arterial blood pressure namespace: biological_process def: "Renal process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure." [GOC:dph, GOC:mtg_cardio, GOC:tb] synonym: "renal control of blood pressure" EXACT [] synonym: "renal regulation of systemic arterial blood pressure" EXACT [GOC:dph, GOC:tb] is_a: GO:0003014 ! renal system process relationship: part_of GO:0003073 ! regulation of systemic arterial blood pressure property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003073 name: regulation of systemic arterial blood pressure namespace: biological_process def: "The process that modulates the force with which blood travels through the systemic arterial circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure." [GOC:mtg_cardio] is_a: GO:0008217 ! regulation of blood pressure property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003091 name: renal water homeostasis namespace: biological_process def: "Renal process involved in the maintenance of an internal steady state of water in the body." [GOC:mtg_cardio] synonym: "water homeostasis by the kidney" EXACT [] is_a: GO:0003014 ! renal system process is_a: GO:0050891 ! multicellular organismal water homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003093 name: regulation of glomerular filtration namespace: biological_process def: "Any process that modulates the frequency, rate or extent of glomerular filtration. Glomerular filtration is the process in which blood is filtered by the glomerulus into the renal tubule." [GOC:mtg_cardio] is_a: GO:0001977 ! renal system process involved in regulation of blood volume is_a: GO:0044057 ! regulation of system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003094 name: glomerular filtration namespace: biological_process def: "The process in which plasma is filtered through the glomerular membrane which consists of capillary endothelial cells, the basement membrane, and epithelial cells. The glomerular filtrate is the same as plasma except it has no significant amount of protein." [GOC:mtg_cardio, GOC:sart, ISBN:0721643949] is_a: GO:0097205 ! renal filtration property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0003097 name: renal water transport namespace: biological_process def: "The directed movement of water (H2O) by the kidney." [GOC:mtg_cardio] is_a: GO:0003014 ! renal system process is_a: GO:0006833 ! water transport relationship: part_of GO:0003091 ! renal water homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005975 name: carbohydrate metabolic process namespace: biological_process def: "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule." [GOC:mah, ISBN:0198506732] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "carbohydrate metabolism" EXACT [] xref: Reactome:REACT_102834 xref: Reactome:REACT_103806 xref: Reactome:REACT_104502 xref: Reactome:REACT_105321 xref: Reactome:REACT_106046 xref: Reactome:REACT_107409 xref: Reactome:REACT_115733 xref: Reactome:REACT_28218 xref: Reactome:REACT_32291 xref: Reactome:REACT_33141 xref: Reactome:REACT_33953 xref: Reactome:REACT_34800 xref: Reactome:REACT_474 xref: Reactome:REACT_77669 xref: Reactome:REACT_81945 xref: Reactome:REACT_83038 xref: Reactome:REACT_83329 xref: Reactome:REACT_88330 xref: Reactome:REACT_88558 xref: Reactome:REACT_90099 xref: Reactome:REACT_96375 xref: Reactome:REACT_98394 xref: Wikipedia:Carbohydrate_metabolism is_a: GO:0044238 ! primary metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005976 name: polysaccharide metabolic process namespace: biological_process def: "The chemical reactions and pathways involving polysaccharides, a polymer of more than 20 monosaccharide residues joined by glycosidic linkages." [ISBN:0198547684] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "glycan metabolic process" EXACT [] synonym: "glycan metabolism" EXACT [] synonym: "polysaccharide metabolism" EXACT [] is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0043170 ! macromolecule metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006022 name: aminoglycan metabolic process namespace: biological_process def: "The chemical reactions and pathways involving aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages." [GOC:ai, ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset synonym: "aminoglycan metabolism" EXACT [] is_a: GO:0005976 ! polysaccharide metabolic process is_a: GO:0009308 ! amine metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006023 name: aminoglycan biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages." [GOC:ai, ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset synonym: "aminoglycan anabolism" EXACT [] synonym: "aminoglycan biosynthesis" EXACT [] synonym: "aminoglycan formation" EXACT [] synonym: "aminoglycan synthesis" EXACT [] is_a: GO:0000271 ! polysaccharide biosynthetic process is_a: GO:0006022 ! aminoglycan metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006024 name: glycosaminoglycan biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars." [ISBN:0192800981] subset: gosubset_prok ! Prokaryotic GO subset synonym: "glycosaminoglycan anabolism" EXACT [] synonym: "glycosaminoglycan biosynthesis" EXACT [] synonym: "glycosaminoglycan formation" EXACT [] synonym: "glycosaminoglycan synthesis" EXACT [] is_a: GO:0006023 ! aminoglycan biosynthetic process is_a: GO:0030203 ! glycosaminoglycan metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006066 name: alcohol metabolic process namespace: biological_process def: "The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom." [CHEBI:30879, ISBN:0198506732] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "alcohol metabolism" EXACT [] is_a: GO:0044281 ! small molecule metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006082 name: organic acid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage." [ISBN:0198506732] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "organic acid metabolism" EXACT [] is_a: GO:0044237 ! cellular metabolic process is_a: GO:0044281 ! small molecule metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006139 name: nucleobase-containing compound metabolic process namespace: biological_process alt_id: GO:0055134 def: "Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" EXACT [] synonym: "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] synonym: "nucleobase, nucleoside and nucleotide metabolic process" RELATED [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" RELATED [GOC:dph, GOC:tb] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] is_a: GO:0034641 ! cellular nitrogen compound metabolic process is_a: GO:0044238 ! primary metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006259 name: DNA metabolic process namespace: biological_process alt_id: GO:0055132 def: "Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides." [ISBN:0198506732] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "DNA metabolism" EXACT [] synonym: "cellular DNA metabolism" EXACT [] is_a: GO:0044260 ! cellular macromolecule metabolic process is_a: GO:0090304 ! nucleic acid metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006310 name: DNA recombination namespace: biological_process def: "Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction." [ISBN:0198506732] subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006259 ! DNA metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006323 name: DNA packaging namespace: biological_process def: "Any process in which DNA and associated proteins are formed into a compact, orderly structure." [GOC:mah, ISBN:0815316194] subset: goslim_pir ! PIR GO slim synonym: "DNA organisation" EXACT [GOC:curators] synonym: "DNA organization" EXACT [GOC:curators] is_a: GO:0071103 ! DNA conformation change is_a: GO:0071842 ! cellular component organization at cellular level property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006520 name: cellular amino acid metabolic process namespace: biological_process alt_id: GO:0006519 def: "The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells." [CHEBI:33709, GOC:curators, ISBN:0198506732] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "amino acid and derivative metabolism" EXACT [GOC:curators] synonym: "amino acid metabolic process" EXACT [GOC:curators] synonym: "cellular amino acid and derivative metabolic process" EXACT [] synonym: "cellular amino acid metabolism" EXACT [] xref: Reactome:REACT_116093 is_a: GO:0019752 ! carboxylic acid metabolic process is_a: GO:0044106 ! cellular amine metabolic process is_a: GO:0044238 ! primary metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006575 name: cellular modified amino acid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving compounds derived from amino acids, organic acids containing one or more amino substituents." [CHEBI:25359, GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "amino acid derivative metabolic process" EXACT [GOC:curators] synonym: "cellular amino acid derivative metabolic process" EXACT [GOC:curators] synonym: "cellular amino acid derivative metabolism" EXACT [] synonym: "cellular modified amino acid metabolism" EXACT [GOC:mah] synonym: "modified amino acid metabolic process" EXACT [GOC:mah] synonym: "modified amino acid metabolism" EXACT [GOC:mah] is_a: GO:0006520 ! cellular amino acid metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006590 name: thyroid hormone generation namespace: biological_process def: "The formation of either of the compounds secreted by the thyroid gland, mainly thyroxine and triiodothyronine. This is achieved by the iodination and joining of tyrosine molecules to form the precursor thyroglobin, proteolysis of this precursor gives rise to the thyroid hormones." [GOC:jl, ISBN:0716720094] comment: Note that this term does not fall under the general GO definition for biosynthetic processes, which is 'The chemical reactions and pathways resulting in the formation of... ', because thyroid hormones can only be formed by the proteolysis of a larger molecule (see term definition). The word 'generation' is therefore used in place of biosynthesis. xref: Reactome:REACT_100560 xref: Reactome:REACT_101145 xref: Reactome:REACT_103574 xref: Reactome:REACT_109249 xref: Reactome:REACT_15292 xref: Reactome:REACT_28288 xref: Reactome:REACT_28294 xref: Reactome:REACT_80508 xref: Reactome:REACT_80963 xref: Reactome:REACT_90570 xref: Reactome:REACT_93623 xref: Reactome:REACT_95788 xref: Reactome:REACT_97527 xref: Reactome:REACT_99447 is_a: GO:0042403 ! thyroid hormone metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006629 name: lipid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids." [GOC:ma] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "lipid metabolism" EXACT [] xref: Reactome:REACT_104930 xref: Reactome:REACT_107479 xref: Reactome:REACT_108775 xref: Reactome:REACT_114669 xref: Reactome:REACT_115652 xref: Reactome:REACT_28745 xref: Reactome:REACT_31395 xref: Reactome:REACT_32539 xref: Reactome:REACT_33836 xref: Reactome:REACT_602 xref: Reactome:REACT_77176 xref: Reactome:REACT_77191 xref: Reactome:REACT_79244 xref: Reactome:REACT_81778 xref: Reactome:REACT_82512 xref: Reactome:REACT_82723 xref: Reactome:REACT_87884 xref: Reactome:REACT_90757 xref: Reactome:REACT_94607 xref: Reactome:REACT_97906 xref: Reactome:REACT_98129 xref: Reactome:REACT_99706 xref: Wikipedia:Lipid_metabolism is_a: GO:0044238 ! primary metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006694 name: steroid biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "steroid anabolism" EXACT [] synonym: "steroid biosynthesis" EXACT [] synonym: "steroid formation" EXACT [] synonym: "steroid synthesis" EXACT [] synonym: "steroidogenesis" EXACT [] xref: Wikipedia:Steroid_metabolisms#Steroid_biosynthesis is_a: GO:0008202 ! steroid metabolic process is_a: GO:0008610 ! lipid biosynthetic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006700 name: C21-steroid hormone biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones." [GOC:ai] synonym: "C21-steroid hormone anabolism" EXACT [] synonym: "C21-steroid hormone biosynthesis" EXACT [] synonym: "C21-steroid hormone formation" EXACT [] synonym: "C21-steroid hormone synthesis" EXACT [] xref: Reactome:REACT_100114 xref: Reactome:REACT_107086 xref: Reactome:REACT_11038 xref: Reactome:REACT_113158 xref: Reactome:REACT_115282 xref: Reactome:REACT_115412 xref: Reactome:REACT_32512 xref: Reactome:REACT_79584 xref: Reactome:REACT_81844 xref: Reactome:REACT_85889 xref: Reactome:REACT_86180 xref: Reactome:REACT_89702 xref: Reactome:REACT_91740 xref: Reactome:REACT_91942 xref: Reactome:REACT_96917 xref: Reactome:REACT_98782 is_a: GO:0006694 ! steroid biosynthetic process is_a: GO:0008207 ! C21-steroid hormone metabolic process is_a: GO:0042446 ! hormone biosynthetic process is_a: GO:0044249 ! cellular biosynthetic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006704 name: glucocorticoid biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol." [ISBN:0198506732] synonym: "glucocorticoid anabolism" EXACT [] synonym: "glucocorticoid biosynthesis" EXACT [] synonym: "glucocorticoid formation" EXACT [] synonym: "glucocorticoid synthesis" EXACT [] xref: Reactome:REACT_100413 xref: Reactome:REACT_101421 xref: Reactome:REACT_102866 xref: Reactome:REACT_107330 xref: Reactome:REACT_107450 xref: Reactome:REACT_107635 xref: Reactome:REACT_108788 xref: Reactome:REACT_11036 xref: Reactome:REACT_112672 xref: Reactome:REACT_113066 xref: Reactome:REACT_77995 xref: Reactome:REACT_79303 xref: Reactome:REACT_84297 xref: Reactome:REACT_85887 xref: Reactome:REACT_86974 xref: Reactome:REACT_88537 xref: Reactome:REACT_94676 is_a: GO:0006700 ! C21-steroid hormone biosynthetic process is_a: GO:0008211 ! glucocorticoid metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006705 name: mineralocorticoid biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of mineralocorticoids, hormonal C21 corticosteroids synthesized from cholesterol." [ISBN:0198506732] synonym: "mineralocorticoid anabolism" EXACT [] synonym: "mineralocorticoid biosynthesis" EXACT [] synonym: "mineralocorticoid formation" EXACT [] synonym: "mineralocorticoid synthesis" EXACT [] xref: Reactome:REACT_103517 xref: Reactome:REACT_108854 xref: Reactome:REACT_109273 xref: Reactome:REACT_11047 xref: Reactome:REACT_112957 xref: Reactome:REACT_113805 xref: Reactome:REACT_30217 xref: Reactome:REACT_32293 xref: Reactome:REACT_77462 xref: Reactome:REACT_86556 xref: Reactome:REACT_88868 xref: Reactome:REACT_94686 xref: Reactome:REACT_97241 is_a: GO:0006700 ! C21-steroid hormone biosynthetic process is_a: GO:0008212 ! mineralocorticoid metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006725 name: cellular aromatic compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells." [GOC:ai, ISBN:0198506732] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "aromatic compound metabolism" EXACT [] synonym: "aromatic hydrocarbon metabolic process" NARROW [] synonym: "aromatic hydrocarbon metabolism" NARROW [] is_a: GO:0044237 ! cellular metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006790 name: sulfur compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione." [GOC:ai] subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "sulfur metabolism" EXACT [] synonym: "sulphur metabolic process" EXACT [] synonym: "sulphur metabolism" EXACT [] xref: Reactome:REACT_27247 xref: Wikipedia:Sulfur_metabolism is_a: GO:0044237 ! cellular metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006801 name: superoxide metabolic process namespace: biological_process def: "The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species." [CHEBI:18421, GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "oxygen free radical metabolic process" EXACT [] synonym: "oxygen free radical metabolism" EXACT [] synonym: "superoxide free radical metabolic process" EXACT [] synonym: "superoxide free radical metabolism" EXACT [] synonym: "superoxide metabolism" EXACT [] is_a: GO:0072593 ! reactive oxygen species metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006807 name: nitrogen compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium." [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732] comment: Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node. subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "nitrogen compound metabolism" EXACT [] is_a: GO:0008152 ! metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006810 name: transport namespace: biological_process alt_id: GO:0015457 alt_id: GO:0015460 def: "The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore." [GOC:dph, GOC:jl, GOC:mah] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "auxiliary transport protein activity" RELATED [GOC:mah] synonym: "small molecule transport" NARROW [] synonym: "solute:solute exchange" NARROW [] synonym: "transport accessory protein activity" RELATED [GOC:mah] is_a: GO:0051234 ! establishment of localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006811 name: ion transport namespace: biological_process def: "The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Reactome:REACT_102356 xref: Reactome:REACT_102895 xref: Reactome:REACT_106972 xref: Reactome:REACT_109067 xref: Reactome:REACT_110862 xref: Reactome:REACT_19397 xref: Reactome:REACT_29110 xref: Reactome:REACT_31978 xref: Reactome:REACT_33992 xref: Reactome:REACT_34201 xref: Reactome:REACT_79109 xref: Reactome:REACT_82618 xref: Reactome:REACT_87822 xref: Reactome:REACT_91472 xref: Reactome:REACT_91958 xref: Reactome:REACT_92903 xref: Reactome:REACT_93485 xref: Reactome:REACT_94357 xref: Reactome:REACT_96078 xref: Reactome:REACT_96919 xref: Reactome:REACT_98077 is_a: GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006820 name: anion transport namespace: biological_process alt_id: GO:0006822 def: "The directed movement of anions, atoms or small molecules with a net negative charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006811 ! ion transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006833 name: water transport namespace: biological_process def: "The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset xref: Reactome:REACT_100323 xref: Reactome:REACT_100926 xref: Reactome:REACT_101470 xref: Reactome:REACT_102276 xref: Reactome:REACT_104925 xref: Reactome:REACT_106426 xref: Reactome:REACT_107038 xref: Reactome:REACT_107112 xref: Reactome:REACT_108009 xref: Reactome:REACT_108199 xref: Reactome:REACT_108998 xref: Reactome:REACT_109077 xref: Reactome:REACT_109206 xref: Reactome:REACT_110412 xref: Reactome:REACT_112337 xref: Reactome:REACT_113611 xref: Reactome:REACT_23826 xref: Reactome:REACT_23887 xref: Reactome:REACT_24023 xref: Reactome:REACT_29327 xref: Reactome:REACT_30349 xref: Reactome:REACT_30374 xref: Reactome:REACT_31971 xref: Reactome:REACT_32279 xref: Reactome:REACT_32908 xref: Reactome:REACT_33949 xref: Reactome:REACT_34264 xref: Reactome:REACT_77599 xref: Reactome:REACT_80678 xref: Reactome:REACT_80794 xref: Reactome:REACT_82029 xref: Reactome:REACT_83369 xref: Reactome:REACT_84018 xref: Reactome:REACT_84275 xref: Reactome:REACT_84902 xref: Reactome:REACT_86198 xref: Reactome:REACT_87355 xref: Reactome:REACT_89286 xref: Reactome:REACT_90368 xref: Reactome:REACT_91961 xref: Reactome:REACT_92364 xref: Reactome:REACT_95030 xref: Reactome:REACT_96766 xref: Reactome:REACT_97951 xref: Reactome:REACT_98188 xref: Reactome:REACT_99705 is_a: GO:0042044 ! fluid transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006837 name: serotonin transport namespace: biological_process def: "The directed movement of serotonin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems." [GOC:ai] is_a: GO:0015844 ! monoamine transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006897 name: endocytosis namespace: biological_process alt_id: GO:0016193 alt_id: GO:0016196 def: "A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle." [GOC:mah, ISBN:0198506732, ISBN:0716731363] subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "nonselective vesicle endocytosis" RELATED [] synonym: "plasma membrane invagination" EXACT [] synonym: "vesicle endocytosis" EXACT [] xref: Wikipedia:Endocytosis is_a: GO:0010324 ! membrane invagination is_a: GO:0016192 ! vesicle-mediated transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006898 name: receptor-mediated endocytosis namespace: biological_process def: "An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles." [GOC:mah, ISBN:0716731363] synonym: "receptor mediated endocytosis" EXACT [] xref: Reactome:REACT_100248 xref: Reactome:REACT_100330 xref: Reactome:REACT_103823 xref: Reactome:REACT_103978 xref: Reactome:REACT_104437 xref: Reactome:REACT_105792 xref: Reactome:REACT_106851 xref: Reactome:REACT_106981 xref: Reactome:REACT_107174 xref: Reactome:REACT_107413 xref: Reactome:REACT_107880 xref: Reactome:REACT_109308 xref: Reactome:REACT_110306 xref: Reactome:REACT_110472 xref: Reactome:REACT_110785 xref: Reactome:REACT_111177 xref: Reactome:REACT_112262 xref: Reactome:REACT_113143 xref: Reactome:REACT_113715 xref: Reactome:REACT_114061 xref: Reactome:REACT_114157 xref: Reactome:REACT_114755 xref: Reactome:REACT_114861 xref: Reactome:REACT_115278 xref: Reactome:REACT_115471 xref: Reactome:REACT_115520 xref: Reactome:REACT_28736 xref: Reactome:REACT_29541 xref: Reactome:REACT_30278 xref: Reactome:REACT_30568 xref: Reactome:REACT_30705 xref: Reactome:REACT_30731 xref: Reactome:REACT_31404 xref: Reactome:REACT_31638 xref: Reactome:REACT_33230 xref: Reactome:REACT_33281 xref: Reactome:REACT_34027 xref: Reactome:REACT_50314 xref: Reactome:REACT_50874 xref: Reactome:REACT_6720 xref: Reactome:REACT_6775 xref: Reactome:REACT_6810 xref: Reactome:REACT_6849 xref: Reactome:REACT_6860 xref: Reactome:REACT_6901 xref: Reactome:REACT_6924 xref: Reactome:REACT_6934 xref: Reactome:REACT_6940 xref: Reactome:REACT_6951 xref: Reactome:REACT_77527 xref: Reactome:REACT_78454 xref: Reactome:REACT_78761 xref: Reactome:REACT_80639 xref: Reactome:REACT_80964 xref: Reactome:REACT_81206 xref: Reactome:REACT_81516 xref: Reactome:REACT_81850 xref: Reactome:REACT_82541 xref: Reactome:REACT_82595 xref: Reactome:REACT_83238 xref: Reactome:REACT_83320 xref: Reactome:REACT_83479 xref: Reactome:REACT_84153 xref: Reactome:REACT_84233 xref: Reactome:REACT_84451 xref: Reactome:REACT_84602 xref: Reactome:REACT_84963 xref: Reactome:REACT_84978 xref: Reactome:REACT_84983 xref: Reactome:REACT_85895 xref: Reactome:REACT_86311 xref: Reactome:REACT_87254 xref: Reactome:REACT_87301 xref: Reactome:REACT_90065 xref: Reactome:REACT_90294 xref: Reactome:REACT_90795 xref: Reactome:REACT_91303 xref: Reactome:REACT_91595 xref: Reactome:REACT_93284 xref: Reactome:REACT_93519 xref: Reactome:REACT_94912 xref: Reactome:REACT_95536 xref: Reactome:REACT_96679 xref: Reactome:REACT_98265 xref: Reactome:REACT_99018 xref: Wikipedia:Receptor-mediated_endocytosis is_a: GO:0006897 ! endocytosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006909 name: phagocytosis namespace: biological_process def: "An endocytosis process that results in the engulfment of external particulate material by phagocytes. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles." [ISBN:0198506732] xref: Wikipedia:Phagocytosis is_a: GO:0006897 ! endocytosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006915 name: apoptotic process namespace: biological_process alt_id: GO:0008632 def: "A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathways) which typically lead to rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. The process ends when the cell has died. The process is divided into a signaling pathway phase and into an execution phase, which is triggered by the former." [GOC:dhl, GOC:ecd, GOC:go_curators, GOC:mtg_apoptosis, GOC:tb, ISBN:0198506732, PMID:18846107, PMID:21494263] synonym: "apoptosis" NARROW [] synonym: "apoptotic cell death" EXACT [GOC:sl] synonym: "apoptotic program" NARROW [GOC:add] synonym: "apoptotic programmed cell death" EXACT [] synonym: "cell suicide" BROAD [] synonym: "cellular suicide" BROAD [] synonym: "programmed cell death by apoptosis" EXACT [] synonym: "signaling (initiator) caspase activity" RELATED [] synonym: "type I programmed cell death" NARROW [] xref: Reactome:REACT_100045 xref: Reactome:REACT_100962 xref: Reactome:REACT_101249 xref: Reactome:REACT_104187 xref: Reactome:REACT_105149 xref: Reactome:REACT_106405 xref: Reactome:REACT_106672 xref: Reactome:REACT_107264 xref: Reactome:REACT_108651 xref: Reactome:REACT_109165 xref: Reactome:REACT_110081 xref: Reactome:REACT_111964 xref: Reactome:REACT_13526 xref: Reactome:REACT_13638 xref: Reactome:REACT_13643 xref: Reactome:REACT_28087 xref: Reactome:REACT_28795 xref: Reactome:REACT_28816 xref: Reactome:REACT_30266 xref: Reactome:REACT_30361 xref: Reactome:REACT_30371 xref: Reactome:REACT_30548 xref: Reactome:REACT_30763 xref: Reactome:REACT_31349 xref: Reactome:REACT_34139 xref: Reactome:REACT_578 xref: Reactome:REACT_77132 xref: Reactome:REACT_77313 xref: Reactome:REACT_77415 xref: Reactome:REACT_78287 xref: Reactome:REACT_78802 xref: Reactome:REACT_79809 xref: Reactome:REACT_82724 xref: Reactome:REACT_83328 xref: Reactome:REACT_85877 xref: Reactome:REACT_86749 xref: Reactome:REACT_86873 xref: Reactome:REACT_87570 xref: Reactome:REACT_88740 xref: Reactome:REACT_88784 xref: Reactome:REACT_89196 xref: Reactome:REACT_90267 xref: Reactome:REACT_91011 xref: Reactome:REACT_91243 xref: Reactome:REACT_93937 xref: Reactome:REACT_94099 xref: Reactome:REACT_95069 xref: Reactome:REACT_95675 xref: Reactome:REACT_97627 xref: Reactome:REACT_99784 xref: Reactome:REACT_99799 xref: Wikipedia:Apoptosis is_a: GO:0012501 ! programmed cell death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006917 name: induction of apoptosis namespace: biological_process def: "A process that directly activates any of the steps required for cell death by apoptosis." [GOC:go_curators] synonym: "activation of apoptosis" EXACT [] synonym: "apoptosis activator activity" RELATED [] synonym: "apoptosis signaling" BROAD [] synonym: "commitment to apoptosis" EXACT [] synonym: "induction of apoptosis by p53" NARROW [] is_a: GO:0012502 ! induction of programmed cell death is_a: GO:0043065 ! positive regulation of apoptotic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006921 name: cellular component disassembly involved in apoptosis namespace: biological_process def: "The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis." [GOC:dph, GOC:mah, GOC:tb] synonym: "disassembly of cell structures" BROAD [] xref: Reactome:REACT_100800 xref: Reactome:REACT_108463 xref: Reactome:REACT_29660 xref: Reactome:REACT_77151 xref: Reactome:REACT_78666 xref: Reactome:REACT_79472 xref: Reactome:REACT_79859 xref: Reactome:REACT_80493 xref: Reactome:REACT_81021 xref: Reactome:REACT_81052 xref: Reactome:REACT_84120 xref: Reactome:REACT_89424 xref: Reactome:REACT_90988 xref: Reactome:REACT_92689 xref: Reactome:REACT_93576 xref: Reactome:REACT_94230 xref: Reactome:REACT_97703 xref: Reactome:REACT_995 is_a: GO:0071845 ! cellular component disassembly at cellular level relationship: part_of GO:0006915 ! apoptotic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006928 name: cellular component movement namespace: biological_process def: "The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore." [GOC:dgh, GOC:dph, GOC:jl, GOC:mlg] comment: Note that in GO cellular components include whole cells (cell is_a cellular component). subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell movement" RELATED [] synonym: "cellular component motion" EXACT [GOC:dph, GOC:jl] is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006935 name: chemotaxis namespace: biological_process def: "The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis)." [ISBN:0198506732] subset: goslim_metagenomics ! Metagenomics GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "taxis in response to chemical stimulus" EXACT [] xref: Wikipedia:Chemotaxis is_a: GO:0042221 ! response to chemical stimulus is_a: GO:0042330 ! taxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006936 name: muscle contraction namespace: biological_process def: "A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis." [GOC:ef, GOC:mtg_muscle, ISBN:0198506732] subset: goslim_pir ! PIR GO slim xref: Reactome:REACT_100109 xref: Reactome:REACT_102067 xref: Reactome:REACT_20558 xref: Reactome:REACT_29015 xref: Reactome:REACT_77478 xref: Reactome:REACT_81255 xref: Reactome:REACT_83607 xref: Reactome:REACT_85440 xref: Reactome:REACT_87764 xref: Reactome:REACT_88232 xref: Reactome:REACT_92442 xref: Wikipedia:Muscle_contraction is_a: GO:0003012 ! muscle system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006937 name: regulation of muscle contraction namespace: biological_process def: "Any process that modulates the frequency, rate or extent of muscle contraction." [GOC:go_curators] is_a: GO:0090257 ! regulation of muscle system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006939 name: smooth muscle contraction namespace: biological_process def: "A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length." [GOC:ef, GOC:jl, GOC:mtg_muscle, ISBN:0198506732] synonym: "visceral muscle contraction" EXACT [] is_a: GO:0006936 ! muscle contraction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006940 name: regulation of smooth muscle contraction namespace: biological_process def: "Any process that modulates the frequency, rate or extent of smooth muscle contraction." [GOC:go_curators] is_a: GO:0006937 ! regulation of muscle contraction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006941 name: striated muscle contraction namespace: biological_process def: "A process in which force is generated within striated muscle tissue, resulting in the shortening of the muscle. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope." [GOC:jl, GOC:mtg_muscle, ISBN:0198506732] synonym: "sarcomeric muscle contraction" EXACT [] is_a: GO:0006936 ! muscle contraction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006950 name: response to stress namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "response to abiotic stress" RELATED [] synonym: "response to biotic stress" RELATED [] is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006952 name: defense response namespace: biological_process alt_id: GO:0002217 alt_id: GO:0042829 def: "Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "antimicrobial peptide activity" RELATED [] synonym: "defence response" EXACT [] synonym: "defense/immunity protein activity" RELATED [] synonym: "physiological defense response" EXACT [] is_a: GO:0006950 ! response to stress property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006954 name: inflammatory response namespace: biological_process def: "The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages." [GOC:mtg_15nov05, GO_REF:0000022, ISBN:0198506732] comment: This term was improved by GO_REF:0000022. It was moved. xref: Wikipedia:Inflammation is_a: GO:0006952 ! defense response is_a: GO:0009611 ! response to wounding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006955 name: immune response namespace: biological_process def: "Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022] comment: This term was improved by GO_REF:0000022. It was redefined and moved. is_a: GO:0002376 ! immune system process is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006959 name: humoral immune response namespace: biological_process def: "An immune response mediated through a body fluid." [GOC:hb, ISBN:0198506732] xref: Wikipedia:Humoral_immunity is_a: GO:0006955 ! immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006996 name: organelle organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:mah] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "organelle organisation" EXACT [GOC:curators] synonym: "organelle organization and biogenesis" RELATED [GOC:dph, GOC:jl, GOC:mah] is_a: GO:0071842 ! cellular component organization at cellular level property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0006997 name: nucleus organization namespace: biological_process alt_id: GO:0048287 def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus." [GOC:dph, GOC:ems, GOC:jl, GOC:mah] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_pir ! PIR GO slim subset: goslim_yeast ! Yeast GO slim synonym: "nuclear morphology" RELATED [] synonym: "nuclear organisation" EXACT [GOC:curators] synonym: "nuclear organization" EXACT [GOC:curators] synonym: "nuclear organization and biogenesis" RELATED [GOC:mah] synonym: "nucleus organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007010 name: cytoskeleton organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures." [GOC:dph, GOC:jl, GOC:mah] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cytoskeletal organization and biogenesis" RELATED [GOC:mah] synonym: "cytoskeletal regulator activity" RELATED [] synonym: "cytoskeleton organisation" EXACT [GOC:curators] synonym: "cytoskeleton organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007017 name: microtubule-based process namespace: biological_process def: "Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins." [GOC:mah] is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007049 name: cell cycle namespace: biological_process def: "The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division." [GOC:go_curators] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell-division cycle" EXACT [] xref: Wikipedia:Cell_cycle is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007067 name: mitosis namespace: biological_process def: "A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell." [GOC:dph, GOC:ma, GOC:mah, ISBN:0198547684] subset: goslim_generic ! Generic GO slim xref: Wikipedia:Mitosis is_a: GO:0000280 ! nuclear division is_a: GO:0022403 ! cell cycle phase relationship: part_of GO:0000087 ! M phase of mitotic cell cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007113 name: endomitotic cell cycle namespace: biological_process def: "A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell." [GOC:curators, GOC:dos, GOC:expert_vm] comment: Note that this term should not be confused with 'abortive mitotic cell cycle ; GO:0033277'. Although abortive mitosis is sometimes called endomitosis, GO:0033277 refers to a process in which a mitotic spindle forms and chromosome separation begins. synonym: "endomitosis" RELATED [] xref: Wikipedia:Mitosis#Endomitosis is_a: GO:0000278 ! mitotic cell cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007126 name: meiosis namespace: biological_process def: "A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle. A meiotic cell cycle is the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations." [GOC:dph, GOC:mah, PMID:9334324] subset: goslim_pombe ! Fission yeast GO slim xref: Wikipedia:Meiosis is_a: GO:0022403 ! cell cycle phase relationship: part_of GO:0051327 ! M phase of meiotic cell cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007135 name: meiosis II namespace: biological_process def: "A cell cycle process comprising the steps by which a cell progresses through the second phase of meiosis, in which cells divide and separate the two chromatids in each chromosome." [GOC:dph, GOC:mah, ISBN:0198547684] xref: Wikipedia:Meiosis#Meiosis_II is_a: GO:0022403 ! cell cycle phase relationship: part_of GO:0007126 ! meiosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007140 name: male meiosis namespace: biological_process def: "A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle in the male germline." [GOC:dph, GOC:mah] is_a: GO:0007126 ! meiosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007142 name: male meiosis II namespace: biological_process def: "A cell cycle process comprising the steps by which a cell progresses through male meiosis II, the second meiotic division in the male germline." [GOC:dph, GOC:mah] is_a: GO:0007135 ! meiosis II relationship: part_of GO:0007140 ! male meiosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007143 name: female meiosis namespace: biological_process def: "A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle in the female germline." [GOC:dph, GOC:ems, GOC:mah] comment: Note that female germ lines can be found in female or hermaphroditic organisms, so this term can be used to annotate gene products from hermaphrodites such as those of C. elegans. See also the biological process term 'meiosis ; GO:0007126'. is_a: GO:0007126 ! meiosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007147 name: female meiosis II namespace: biological_process def: "The cell cycle process in which the second meiotic division occurs in the female germline." [GOC:mah] is_a: GO:0007135 ! meiosis II relationship: part_of GO:0007143 ! female meiosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007154 name: cell communication namespace: biological_process def: "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:mah] subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Wikipedia:Cell_signaling is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007165 name: signal transduction namespace: biological_process alt_id: GO:0023033 def: "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell." [GOC:go_curators, GOC:mtg_signaling_feb11] comment: Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "signaling cascade" NARROW [] synonym: "signaling pathway" RELATED [] synonym: "signalling cascade" NARROW [] synonym: "signalling pathway" RELATED [GOC:mah] xref: Reactome:REACT_100624 xref: Reactome:REACT_102354 xref: Reactome:REACT_112130 xref: Reactome:REACT_112549 xref: Reactome:REACT_113151 xref: Reactome:REACT_113601 xref: Reactome:REACT_113964 xref: Reactome:REACT_114657 xref: Reactome:REACT_114690 xref: Reactome:REACT_114820 xref: Reactome:REACT_114910 xref: Reactome:REACT_115037 xref: Reactome:REACT_115147 xref: Reactome:REACT_12478 xref: Reactome:REACT_31232 xref: Reactome:REACT_78535 xref: Reactome:REACT_89740 xref: Reactome:REACT_93680 xref: Reactome:REACT_98872 xref: Wikipedia:Signal_transduction is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051716 ! cellular response to stimulus relationship: part_of GO:0007154 ! cell communication relationship: part_of GO:0023052 ! signaling property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007166 name: cell surface receptor signaling pathway namespace: biological_process def: "A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription." [GOC:bf, GOC:mah, GOC:pr, GOC:signaling] subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell surface receptor linked signal transduction" EXACT [] synonym: "cell surface receptor linked signaling pathway" EXACT [GOC:bf] synonym: "cell surface receptor linked signalling pathway" EXACT [GOC:mah] xref: Reactome:REACT_6290 is_a: GO:0007165 ! signal transduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007186 name: G-protein coupled receptor signaling pathway namespace: biological_process def: "A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription." [GOC:bf, GOC:mah, Wikipedia:G_protein-coupled_receptor] synonym: "G protein coupled receptor protein signaling pathway" EXACT [] synonym: "G protein coupled receptor protein signalling pathway" EXACT [] synonym: "G-protein coupled receptor protein signal transduction" EXACT [] synonym: "G-protein coupled receptor protein signaling pathway" EXACT [GOC:bf] synonym: "G-protein coupled receptor protein signalling pathway" EXACT [] synonym: "G-protein-coupled receptor protein signaling pathway" EXACT [] synonym: "G-protein-coupled receptor protein signalling pathway" EXACT [] synonym: "GPCR protein signaling pathway" EXACT [] synonym: "GPCR protein signalling pathway" EXACT [] is_a: GO:0007166 ! cell surface receptor signaling pathway property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007267 name: cell-cell signaling namespace: biological_process def: "Any process that mediates the transfer of information from one cell to another." [GOC:mah] subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell-cell signalling" EXACT [] is_a: GO:0007154 ! cell communication is_a: GO:0023052 ! signaling property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007275 name: multicellular organismal development namespace: biological_process def: "The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult)." [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb] comment: Note that this term was 'developmental process'. subset: goslim_plant ! Plant GO slim is_a: GO:0032501 ! multicellular organismal process is_a: GO:0032502 ! developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007276 name: gamete generation namespace: biological_process alt_id: GO:0009552 def: "The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell." [GOC:ems, GOC:mtg_sensu] synonym: "gametogenesis" RELATED [] is_a: GO:0048609 ! multicellular organismal reproductive process relationship: part_of GO:0019953 ! sexual reproduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007281 name: germ cell development namespace: biological_process def: "The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism." [GOC:go_curators] synonym: "germ-cell development" EXACT [] synonym: "primordial germ cell development" NARROW [] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048468 ! cell development is_a: GO:0048610 ! cellular process involved in reproduction relationship: part_of GO:0007276 ! gamete generation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007283 name: spermatogenesis namespace: biological_process def: "The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis." [GOC:jid, ISBN:9780878933846] synonym: "generation of spermatozoa" EXACT systematic_synonym [] xref: Wikipedia:Spermatogenesis is_a: GO:0048232 ! male gamete generation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007286 name: spermatid development namespace: biological_process def: "The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure." [GOC:dph, GOC:go_curators] synonym: "spermatid cell development" EXACT [] synonym: "spermiogenesis" EXACT [] xref: Wikipedia:Spermiogenesis is_a: GO:0007281 ! germ cell development relationship: part_of GO:0048515 ! spermatid differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007288 name: sperm axoneme assembly namespace: biological_process def: "The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement." [GOC:bf, ISBN:0198547684] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0010927 ! cellular component assembly involved in morphogenesis is_a: GO:0035084 ! flagellar axoneme assembly is_a: GO:0048610 ! cellular process involved in reproduction relationship: part_of GO:0007286 ! spermatid development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007289 name: spermatid nucleus differentiation namespace: biological_process def: "The specialization of the spermatid nucleus during the development of a spermatid into a mature male gamete competent for fertilization." [GOC:bf, GOC:dph, GOC:jl, GOC:mah] comment: See also the Cell Ontology term 'spermatid ; CL:0000018'. synonym: "spermatid nuclear differentiation" EXACT [] is_a: GO:0006997 ! nucleus organization is_a: GO:0048610 ! cellular process involved in reproduction relationship: part_of GO:0007286 ! spermatid development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007292 name: female gamete generation namespace: biological_process def: "Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction." [GOC:dph, ISBN:0198506732] is_a: GO:0007276 ! gamete generation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007320 name: insemination namespace: biological_process def: "The introduction of semen or sperm into the genital tract of a female." [ISBN:0582227089] xref: Wikipedia:Insemination is_a: GO:0048609 ! multicellular organismal reproductive process relationship: part_of GO:0007620 ! copulation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007369 name: gastrulation namespace: biological_process def: "A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GOC:curators, ISBN:9780878933846] xref: Wikipedia:Gastrulation is_a: GO:0048598 ! embryonic morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007399 name: nervous system development namespace: biological_process def: "The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state." [GOC:dgh] synonym: "pan-neural process" RELATED [] is_a: GO:0048731 ! system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007507 name: heart development namespace: biological_process alt_id: GO:0007511 def: "The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood." [GOC:jid, UBERON:0000948] synonym: "cardiac development" RELATED [] synonym: "dorsal vessel development" NARROW [] xref: Wikipedia:Heart_development is_a: GO:0048513 ! organ development relationship: part_of GO:0072358 ! cardiovascular system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007565 name: female pregnancy namespace: biological_process def: "The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth." [ISBN:0192800825] synonym: "carrying of young" RELATED [] synonym: "gestation" EXACT [] xref: Wikipedia:Gestation is_a: GO:0022414 ! reproductive process is_a: GO:0051704 ! multi-organism process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007585 name: respiratory gaseous exchange namespace: biological_process def: "The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [ISBN:0198506732] synonym: "breathing" BROAD [] synonym: "respiration" BROAD [] is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007586 name: digestion namespace: biological_process def: "The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." [GOC:isa_complete, ISBN:0198506732] subset: goslim_pir ! PIR GO slim xref: Wikipedia:Digestion is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007588 name: excretion namespace: biological_process def: "The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds." [ISBN:0192801023] subset: goslim_pir ! PIR GO slim xref: Wikipedia:Excretion is_a: GO:0003008 ! system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007589 name: body fluid secretion namespace: biological_process def: "The controlled release of a fluid by a cell or group of cells in an animal." [GOC:ai, GOC:dph, GOC:mah, GOC:tb] is_a: GO:0046903 ! secretion is_a: GO:0050878 ! regulation of body fluid levels property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007596 name: blood coagulation namespace: biological_process def: "The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers." [ISBN:0198506732, http://www.graylab.ac.uk/omd/] synonym: "blood clotting" EXACT [] xref: Reactome:REACT_101311 xref: Reactome:REACT_101372 xref: Reactome:REACT_102544 xref: Reactome:REACT_102650 xref: Reactome:REACT_105166 xref: Reactome:REACT_105212 xref: Reactome:REACT_107268 xref: Reactome:REACT_108583 xref: Reactome:REACT_113650 xref: Reactome:REACT_114152 xref: Reactome:REACT_118351 xref: Reactome:REACT_1439 xref: Reactome:REACT_2051 xref: Reactome:REACT_32530 xref: Reactome:REACT_32765 xref: Reactome:REACT_33270 xref: Reactome:REACT_34525 xref: Reactome:REACT_604 xref: Reactome:REACT_76944 xref: Reactome:REACT_78290 xref: Reactome:REACT_81054 xref: Reactome:REACT_81972 xref: Reactome:REACT_82283 xref: Reactome:REACT_82383 xref: Reactome:REACT_82403 xref: Reactome:REACT_82445 xref: Reactome:REACT_82812 xref: Reactome:REACT_82940 xref: Reactome:REACT_83271 xref: Reactome:REACT_84055 xref: Reactome:REACT_84833 xref: Reactome:REACT_85674 xref: Reactome:REACT_86354 xref: Reactome:REACT_89750 xref: Reactome:REACT_89805 xref: Reactome:REACT_90236 xref: Reactome:REACT_90805 xref: Reactome:REACT_92318 xref: Reactome:REACT_94085 xref: Reactome:REACT_94213 xref: Reactome:REACT_94315 xref: Reactome:REACT_94798 xref: Reactome:REACT_96458 xref: Wikipedia:Coagulation is_a: GO:0007599 ! hemostasis is_a: GO:0050817 ! coagulation relationship: part_of GO:0042060 ! wound healing property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007599 name: hemostasis namespace: biological_process def: "The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part." [ISBN:0198506732] xref: Wikipedia:Hemostasis is_a: GO:0050878 ! regulation of body fluid levels property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007600 name: sensory perception namespace: biological_process def: "The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." [GOC:ai, GOC:dph] xref: Wikipedia:Perception is_a: GO:0050877 ! neurological system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007601 name: visual perception namespace: biological_process def: "The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image." [GOC:ai] synonym: "sense of sight" EXACT [] synonym: "sensory visual perception" EXACT [] synonym: "vision" EXACT [] xref: Wikipedia:Visual_perception is_a: GO:0050953 ! sensory perception of light stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007605 name: sensory perception of sound namespace: biological_process def: "The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound." [GOC:ai] synonym: "hearing" EXACT [] synonym: "perception of sound" EXACT [] xref: Wikipedia:Hearing_(sense) is_a: GO:0050954 ! sensory perception of mechanical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007606 name: sensory perception of chemical stimulus namespace: biological_process def: "The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." [GOC:ai] synonym: "chemosensory perception" EXACT [] is_a: GO:0007600 ! sensory perception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007608 name: sensory perception of smell namespace: biological_process def: "The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process." [GOC:ai, http://www.onelook.com/] synonym: "olfaction" EXACT [] synonym: "scent perception" EXACT [] synonym: "sense of smell" EXACT [] synonym: "smell perception" EXACT [] xref: Wikipedia:Olfaction is_a: GO:0007606 ! sensory perception of chemical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007610 name: behavior namespace: biological_process def: "The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions." [GOC:ems, ISBN:0395448956] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "behavioral response to stimulus" EXACT [] synonym: "behaviour" EXACT [] synonym: "behavioural response to stimulus" EXACT [] xref: Wikipedia:Behavior is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007611 name: learning or memory namespace: biological_process def: "The acquisition and processing of information and/or the storage and retrieval of this information over time." [GOC:jid, PMID:8938125] is_a: GO:0007610 ! behavior is_a: GO:0050890 ! cognition property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007612 name: learning namespace: biological_process def: "Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience." [ISBN:0582227089, ISBN:0721662544] xref: Wikipedia:Learning is_a: GO:0007611 ! learning or memory property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007613 name: memory namespace: biological_process def: "The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task)." [GOC:curators, ISBN:0582227089, http://www.onelook.com/] xref: Wikipedia:Memory is_a: GO:0007611 ! learning or memory property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007618 name: mating namespace: biological_process def: "The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes." [ISBN:0387520546] is_a: GO:0022414 ! reproductive process is_a: GO:0051704 ! multi-organism process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007620 name: copulation namespace: biological_process def: "The act of sexual union between male and female, involving the transfer of sperm." [ISBN:0721662544] is_a: GO:0007618 ! mating property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007622 name: rhythmic behavior namespace: biological_process def: "The specific actions or reactions of an organism that recur with measured regularity." [GOC:jl] synonym: "rhythmic behavioral response to stimulus" EXACT [] synonym: "rhythmic behaviour" EXACT [] synonym: "rhythmic behavioural response to stimulus" EXACT [] is_a: GO:0007610 ! behavior is_a: GO:0048511 ! rhythmic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007623 name: circadian rhythm namespace: biological_process alt_id: GO:0050895 def: "Any biological process in an organism that recurs with a regularity of approximately 24 hours." [GOC:bf, GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "circadian process" EXACT [] synonym: "circadian response" RELATED [] synonym: "response to circadian rhythm" RELATED [] xref: Wikipedia:Circadian_rhythm is_a: GO:0048511 ! rhythmic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007625 name: grooming behavior namespace: biological_process def: "The specific actions or reactions of an organism relating to grooming, cleaning and brushing to remove dirt and parasites." [GOC:jl] synonym: "grooming behaviour" EXACT [] is_a: GO:0007610 ! behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007626 name: locomotory behavior namespace: biological_process def: "The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions." [GOC:dph] subset: gosubset_prok ! Prokaryotic GO subset synonym: "behavior via locomotion" EXACT [] synonym: "locomotion in response to stimulus" EXACT [] synonym: "locomotory behavioral response to stimulus" EXACT [] synonym: "locomotory behaviour" EXACT [] synonym: "locomotory behavioural response to stimulus" EXACT [] is_a: GO:0007610 ! behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007631 name: feeding behavior namespace: biological_process def: "Behavior associated with the intake of food." [GOC:mah] comment: See also the biological process term 'behavior ; GO:0007610'. synonym: "behavioral response to food" EXACT [] synonym: "behavioural response to food" EXACT [] synonym: "drinking" NARROW [] synonym: "eating" NARROW [] synonym: "feeding behaviour" EXACT [] xref: Wikipedia:List_of_feeding_behaviours is_a: GO:0007610 ! behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0007635 name: chemosensory behavior namespace: biological_process def: "Behavior that is dependent upon the sensation of chemicals." [GOC:go_curators] synonym: "behavioral response to chemical stimulus" EXACT [] synonym: "behavioural response to chemical stimulus" EXACT [] synonym: "chemosensory behaviour" EXACT [] is_a: GO:0007610 ! behavior is_a: GO:0042221 ! response to chemical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008015 name: blood circulation namespace: biological_process alt_id: GO:0070261 def: "The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products." [GOC:mtg_heart, ISBN:0192800825] subset: goslim_pir ! PIR GO slim synonym: "hemolymph circulation" RELATED [] is_a: GO:0003013 ! circulatory system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008016 name: regulation of heart contraction namespace: biological_process def: "Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process in which the heart decreases in volume in a characteristic way to propel blood through the body." [GOC:dph, GOC:go_curators, GOC:tb] synonym: "regulation of cardiac contraction" EXACT [] is_a: GO:0044057 ! regulation of system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008104 name: protein localization namespace: biological_process def: "Any process in which a protein is transported to, or maintained in, a specific location." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "establishment and maintenance of protein localization" EXACT [] synonym: "protein localisation" EXACT [GOC:mah] is_a: GO:0033036 ! macromolecule localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008150 name: biological_process namespace: biological_process alt_id: GO:0000004 alt_id: GO:0007582 def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [GOC:go_curators, GOC:isa_complete] comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "biological process" EXACT [] synonym: "biological process unknown" NARROW [] synonym: "physiological process" EXACT [] xref: Wikipedia:Biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008152 name: metabolic process namespace: biological_process def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "metabolic process resulting in cell growth" NARROW [] synonym: "metabolism" EXACT [] synonym: "metabolism resulting in cell growth" NARROW [] xref: Wikipedia:Metabolism is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008202 name: steroid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus." [ISBN:0198547684] subset: gosubset_prok ! Prokaryotic GO subset synonym: "steroid metabolism" EXACT [] xref: Reactome:REACT_100535 xref: Reactome:REACT_104514 xref: Reactome:REACT_104993 xref: Reactome:REACT_105831 xref: Reactome:REACT_108650 xref: Reactome:REACT_109307 xref: Reactome:REACT_109504 xref: Reactome:REACT_110283 xref: Reactome:REACT_11057 xref: Reactome:REACT_32683 xref: Reactome:REACT_34426 xref: Reactome:REACT_77930 xref: Reactome:REACT_81781 xref: Reactome:REACT_85390 xref: Reactome:REACT_86063 xref: Reactome:REACT_86862 xref: Reactome:REACT_90075 xref: Reactome:REACT_93239 xref: Reactome:REACT_96786 xref: Reactome:REACT_97355 xref: Wikipedia:Steroid_metabolism is_a: GO:0006629 ! lipid metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008207 name: C21-steroid hormone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones." [GOC:ai] synonym: "C21-steroid hormone metabolism" EXACT [] is_a: GO:0008202 ! steroid metabolic process is_a: GO:0034754 ! cellular hormone metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008211 name: glucocorticoid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects." [ISBN:0198506732] synonym: "glucocorticoid metabolism" EXACT [] synonym: "glucocorticosteroid metabolic process" EXACT [] synonym: "glucocorticosteroid metabolism" EXACT [] is_a: GO:0008207 ! C21-steroid hormone metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008212 name: mineralocorticoid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving mineralocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Mineralocorticoids act primarily on water and electrolyte balance." [ISBN:0198506732] synonym: "mineralocorticoid metabolism" EXACT [] is_a: GO:0008207 ! C21-steroid hormone metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008217 name: regulation of blood pressure namespace: biological_process def: "Any process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure." [GOC:dph, GOC:mtg_cardio, ISBN:0721643949] synonym: "blood pressure homeostasis" RELATED [] synonym: "blood pressure regulation" EXACT [] synonym: "control of blood pressure" RELATED [] xref: Wikipedia:Blood_pressure#Regulation is_a: GO:0065008 ! regulation of biological quality relationship: part_of GO:0008015 ! blood circulation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008219 name: cell death namespace: biological_process def: "Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as \"apoptotic bodies\"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo." [GOC:mah, GOC:mtg_apoptosis] subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "necrosis" RELATED [] is_a: GO:0009987 ! cellular process is_a: GO:0016265 ! death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008283 name: cell proliferation namespace: biological_process def: "The multiplication or reproduction of cells, resulting in the expansion of a cell population." [GOC:mah, GOC:mb] comment: This term was moved out from being a child of 'cellular process' because it is a cell population-level process, and cellular processes are restricted to those processes that involve individual cells. subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008284 name: positive regulation of cell proliferation namespace: biological_process def: "Any process that activates or increases the rate or extent of cell proliferation." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of cell proliferation" NARROW [] synonym: "stimulation of cell proliferation" NARROW [] synonym: "up regulation of cell proliferation" EXACT [] synonym: "up-regulation of cell proliferation" EXACT [] synonym: "upregulation of cell proliferation" EXACT [] is_a: GO:0042127 ! regulation of cell proliferation is_a: GO:0048522 ! positive regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008306 name: associative learning namespace: biological_process def: "Learning by associating a stimulus (the cause) with a particular outcome (the effect)." [ISBN:0582227089] synonym: "Pavlovian conditioning" EXACT [] synonym: "classical conditioning" EXACT [] synonym: "conditional learning" EXACT [] synonym: "conditional response" EXACT [] xref: Wikipedia:Learning#Associative_learning is_a: GO:0007612 ! learning property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008355 name: olfactory learning namespace: biological_process def: "Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs in response to (repeated) exposure to an olfactory cue." [ISBN:0582227089] is_a: GO:0008306 ! associative learning is_a: GO:0042048 ! olfactory behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008544 name: epidermis development namespace: biological_process def: "The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species." [GOC:go_curators, UBERON:0001003] synonym: "hypodermis development" RELATED [GOC:kmv, GOC:rk] is_a: GO:0009888 ! tissue development relationship: part_of GO:0048513 ! organ development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008610 name: lipid biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "lipid anabolism" EXACT [] synonym: "lipid biosynthesis" EXACT [] synonym: "lipid formation" EXACT [] synonym: "lipid synthesis" EXACT [] synonym: "lipogenesis" EXACT [GOC:sl] is_a: GO:0006629 ! lipid metabolic process is_a: GO:0009058 ! biosynthetic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009058 name: biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "anabolism" EXACT [] synonym: "biosynthesis" EXACT [] synonym: "formation" EXACT [] synonym: "synthesis" EXACT [] xref: Wikipedia:Anabolism is_a: GO:0008152 ! metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009059 name: macromolecule biosynthetic process namespace: biological_process alt_id: GO:0043284 def: "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "biopolymer biosynthetic process" EXACT [GOC:mtg_chebi_dec09] synonym: "macromolecule anabolism" EXACT [] synonym: "macromolecule biosynthesis" EXACT [] synonym: "macromolecule formation" EXACT [] synonym: "macromolecule synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0043170 ! macromolecule metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009296 name: flagellum assembly namespace: biological_process def: "The assembly of a flagellum. In bacteria, this is a whiplike motility appendage present on the surface of some species; in eukaryotes, flagella are threadlike protoplasmic extensions used to propel flagellates and sperm. Flagella are composed of flagellin and have the same basic structure as cilia but are longer in proportion to the cell and present in much smaller numbers." [GOC:curators, ISBN:0815316194] subset: gosubset_prok ! Prokaryotic GO subset synonym: "flagella assembly" EXACT [GOC:mah] synonym: "flagella biogenesis" RELATED [] synonym: "flagellum biogenesis" RELATED [GOC:mah] is_a: GO:0030031 ! cell projection assembly is_a: GO:0043064 ! flagellum organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009306 name: protein secretion namespace: biological_process alt_id: GO:0045166 alt_id: GO:0045731 def: "The controlled release of proteins from a cell or group of cells." [GOC:ai] subset: goslim_metagenomics ! Metagenomics GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "glycoprotein secretion" NARROW [] synonym: "protein secretion during cell fate commitment" NARROW [] synonym: "protein secretion resulting in cell fate commitment" NARROW [] is_a: GO:0015031 ! protein transport is_a: GO:0032940 ! secretion by cell property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009308 name: amine metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom." [GOC:jl, ISBN:0198506732] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "amine metabolism" EXACT [] is_a: GO:0006807 ! nitrogen compound metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009314 name: response to radiation namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation." [GOC:jl, Wikipedia:Electromagnetic_radiation] comment: Note that 'radiation' refers to electromagnetic radiation of any wavelength. subset: gosubset_prok ! Prokaryotic GO subset synonym: "response to electromagnetic radiation stimulus" EXACT [] synonym: "response to radiation stimulus" EXACT [] is_a: GO:0009628 ! response to abiotic stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009414 name: response to water deprivation namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water." [GOC:lr] subset: gosubset_prok ! Prokaryotic GO subset synonym: "drought tolerance" RELATED [] synonym: "response to dehydration" EXACT [] synonym: "response to drought" EXACT [] synonym: "response to thirst" EXACT [] is_a: GO:0006950 ! response to stress is_a: GO:0009415 ! response to water property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009415 name: response to water namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water stimulus." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0009628 ! response to abiotic stimulus is_a: GO:0042221 ! response to chemical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009416 name: response to light stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light." [GOC:go_curators, ISBN:0582227089] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0009314 ! response to radiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009566 name: fertilization namespace: biological_process def: "The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy)." [GOC:tb, ISBN:0198506732] xref: Wikipedia:Fertilisation is_a: GO:0022414 ! reproductive process relationship: part_of GO:0019953 ! sexual reproduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009581 name: detection of external stimulus namespace: biological_process def: "The series of events in which an external stimulus is received by a cell and converted into a molecular signal." [GOC:hb] subset: gosubset_prok ! Prokaryotic GO subset synonym: "perception of external stimulus" RELATED [] is_a: GO:0009605 ! response to external stimulus is_a: GO:0051606 ! detection of stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009582 name: detection of abiotic stimulus namespace: biological_process def: "The series of events in which an (non-living) abiotic stimulus is received by a cell and converted into a molecular signal." [GOC:hb] subset: gosubset_prok ! Prokaryotic GO subset synonym: "perception of abiotic stimulus" RELATED [] is_a: GO:0009628 ! response to abiotic stimulus is_a: GO:0051606 ! detection of stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009583 name: detection of light stimulus namespace: biological_process def: "The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "detection of light" EXACT [] synonym: "perception of light" RELATED [] is_a: GO:0009416 ! response to light stimulus is_a: GO:0009581 ! detection of external stimulus is_a: GO:0009582 ! detection of abiotic stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009584 name: detection of visible light namespace: biological_process def: "The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm." [GOC:go_curators, ISBN:0198506732] synonym: "perception of visible light" RELATED [] is_a: GO:0009583 ! detection of light stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009590 name: detection of gravity namespace: biological_process def: "The series of events in which a gravitational stimulus is received by a cell and converted into a molecular signal." [GOC:hb] synonym: "perception of gravity" RELATED [] is_a: GO:0009581 ! detection of external stimulus is_a: GO:0009582 ! detection of abiotic stimulus is_a: GO:0009629 ! response to gravity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009593 name: detection of chemical stimulus namespace: biological_process def: "The series of events in which a chemical stimulus is received by a cell and converted into a molecular signal." [GOC:jl] synonym: "chemoperception" EXACT [] synonym: "detection of chemical substance" EXACT [] synonym: "perception of chemical stimulus" RELATED [] synonym: "perception of chemical substance" RELATED [] is_a: GO:0042221 ! response to chemical stimulus is_a: GO:0051606 ! detection of stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009605 name: response to external stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus." [GOC:hb] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "response to environmental stimulus" EXACT [] is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009607 name: response to biotic stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism." [GOC:hb] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "response to biotic stress" NARROW [] is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009611 name: response to wounding namespace: biological_process alt_id: GO:0002245 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism." [GOC:go_curators] synonym: "physiological response to wounding" EXACT [] is_a: GO:0006950 ! response to stress property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009612 name: response to mechanical stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus." [GOC:hb] subset: gosubset_prok ! Prokaryotic GO subset synonym: "chemi-mechanical coupling" RELATED [] synonym: "mechanical stimulus response" EXACT [] is_a: GO:0009605 ! response to external stimulus is_a: GO:0009628 ! response to abiotic stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009617 name: response to bacterium namespace: biological_process alt_id: GO:0009618 alt_id: GO:0009680 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium." [GOC:hb] subset: gosubset_prok ! Prokaryotic GO subset synonym: "response to bacteria" EXACT [] is_a: GO:0051707 ! response to other organism property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009624 name: response to nematode namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode." [GOC:hb] synonym: "response to nematodes" EXACT [] is_a: GO:0051707 ! response to other organism property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009628 name: response to abiotic stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus." [GOC:hb] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "response to abiotic stress" NARROW [] is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009629 name: response to gravity namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus." [GOC:hb] synonym: "response to gravitational stimulus" EXACT [] is_a: GO:0009628 ! response to abiotic stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009653 name: anatomical structure morphogenesis namespace: biological_process def: "The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form." [GOC:go_curators, ISBN:0521436125] subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "anatomical structure organization" EXACT [] synonym: "embryogenesis and morphogenesis" BROAD [] synonym: "morphogenesis" EXACT [] xref: Wikipedia:Morphogenesis is_a: GO:0032502 ! developmental process relationship: part_of GO:0048856 ! anatomical structure development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009790 name: embryo development namespace: biological_process alt_id: GO:0009795 def: "The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu] subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim synonym: "embryogenesis" EXACT [] synonym: "embryogenesis and morphogenesis" BROAD [] synonym: "embryonal development" EXACT [] xref: Wikipedia:Embryogenesis is_a: GO:0048856 ! anatomical structure development relationship: part_of GO:0007275 ! multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009791 name: post-embryonic development namespace: biological_process def: "The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development." [GOC:go_curators] subset: goslim_plant ! Plant GO slim is_a: GO:0032502 ! developmental process relationship: part_of GO:0007275 ! multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009792 name: embryo development ending in birth or egg hatching namespace: biological_process def: "The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell." [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu] synonym: "embryogenesis" BROAD [] is_a: GO:0009790 ! embryo development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009887 name: organ morphogenesis namespace: biological_process def: "Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions." [GOC:dgh, GOC:go_curators, ISBN:0471245208, ISBN:0721662544] synonym: "histogenesis and organogenesis" BROAD [] is_a: GO:0009653 ! anatomical structure morphogenesis relationship: part_of GO:0048513 ! organ development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009888 name: tissue development namespace: biological_process def: "The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure." [ISBN:0471245208] synonym: "histogenesis" EXACT [] synonym: "histogenesis and organogenesis" BROAD [] xref: Wikipedia:Histogenesis is_a: GO:0048856 ! anatomical structure development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009893 name: positive regulation of metabolic process namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of metabolic process" NARROW [] synonym: "positive regulation of metabolism" EXACT [] synonym: "stimulation of metabolic process" NARROW [] synonym: "up regulation of metabolic process" EXACT [] synonym: "up-regulation of metabolic process" EXACT [] synonym: "upregulation of metabolic process" EXACT [] is_a: GO:0019222 ! regulation of metabolic process is_a: GO:0048518 ! positive regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009913 name: epidermal cell differentiation namespace: biological_process alt_id: GO:0043355 def: "The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis." [GOC:dph, GOC:go_curators, GOC:mtg_sensu, GOC:sdb_2009, GOC:tb] synonym: "hypodermal cell differentiation" RELATED [GOC:kmv, GOC:rk] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0008544 ! epidermis development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009914 name: hormone transport namespace: biological_process def: "The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:tb] subset: goslim_pir ! PIR GO slim is_a: GO:0006810 ! transport is_a: GO:0010817 ! regulation of hormone levels property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0009987 name: cellular process namespace: biological_process alt_id: GO:0008151 alt_id: GO:0050875 def: "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete] subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell growth and/or maintenance" NARROW [] synonym: "cell physiology" EXACT [] synonym: "cellular physiological process" EXACT [] is_a: GO:0008150 ! biological_process disjoint_from: GO:0032501 ! multicellular organismal process disjoint_from: GO:0051704 ! multi-organism process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010033 name: response to organic substance namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus." [GOC:sm] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0042221 ! response to chemical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010324 name: membrane invagination namespace: biological_process def: "The infolding of a membrane, resulting in formation of a vesicle." [GOC:tb] subset: goslim_yeast ! Yeast GO slim is_a: GO:0016044 ! cellular membrane organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010463 name: mesenchymal cell proliferation namespace: biological_process def: "The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [GOC:dph, GOC:tb] is_a: GO:0008283 ! cell proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010464 name: regulation of mesenchymal cell proliferation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [GOC:dph, GOC:tb] is_a: GO:0042127 ! regulation of cell proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010604 name: positive regulation of macromolecule metabolic process namespace: biological_process def: "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010646 name: regulation of cell communication namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010817 name: regulation of hormone levels namespace: biological_process def: "Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action." [GOC:BHF, GOC:dph, GOC:tb] is_a: GO:0065008 ! regulation of biological quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010927 name: cellular component assembly involved in morphogenesis namespace: biological_process def: "The cellular component assembly that is part of the initial shaping of the component during its developmental progression." [GOC:dph, GOC:tb] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis is_a: GO:0071844 ! cellular component assembly at cellular level relationship: part_of GO:0032989 ! cellular component morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010941 name: regulation of cell death namespace: biological_process def: "Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." [GOC:dph, GOC:tb] is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0010942 name: positive regulation of cell death namespace: biological_process def: "Any process that increases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." [GOC:dph, GOC:tb] is_a: GO:0010941 ! regulation of cell death is_a: GO:0048522 ! positive regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0012501 name: programmed cell death namespace: biological_process alt_id: GO:0016244 def: "A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell." [GOC:lr, GOC:mtg_apoptosis] comment: Note that this term should be used to annotate gene products in the organism undergoing the programmed cell death. To annotate genes in another organism whose products modulate programmed cell death in a host organism, consider the term 'modulation by symbiont of host programmed cell death ; GO:0052040'. synonym: "PCD" EXACT [] synonym: "non-apoptotic programmed cell death" NARROW [] synonym: "nonapoptotic programmed cell death" NARROW [] xref: Wikipedia:Programmed_cell_death is_a: GO:0008219 ! cell death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0012502 name: induction of programmed cell death namespace: biological_process alt_id: GO:0012503 def: "A process which directly activates any of the steps required for programmed cell death." [GOC:lr] synonym: "induction of non-apoptotic programmed cell death" NARROW [] synonym: "induction of nonapoptotic programmed cell death" NARROW [] is_a: GO:0043068 ! positive regulation of programmed cell death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0014046 name: dopamine secretion namespace: biological_process def: "The regulated release of dopamine by a cell or group of cells. Dopamine is a catecholamine and a precursor of adrenaline and noradrenaline. It acts as a neurotransmitter in the central nervous system but it is also produced peripherally and acts as a hormone." [GOC:ef] is_a: GO:0015872 ! dopamine transport is_a: GO:0023061 ! signal release is_a: GO:0050432 ! catecholamine secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0014706 name: striated muscle tissue development namespace: biological_process def: "The process whose specific outcome is the progression of a striated muscle over time, from its formation to the mature structure. Striated muscle contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle. Skeletal muscle myoblasts fuse to form myotubes and eventually multinucleated muscle fibers. The fusion of cardiac cells is very rare and can only form binucleate cells." [CL:0000737, GOC:dph, GOC:mtg_muscle] is_a: GO:0060537 ! muscle tissue development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015031 name: protein transport namespace: biological_process alt_id: GO:0015831 def: "The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "enzyme transport" NARROW [] is_a: GO:0006810 ! transport is_a: GO:0045184 ! establishment of protein localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015669 name: gas transport namespace: biological_process def: "The directed movement of substances that are gaseous in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015671 name: oxygen transport namespace: biological_process def: "The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0015669 ! gas transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015698 name: inorganic anion transport namespace: biological_process def: "The directed movement of inorganic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage." [GOC:krc] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006820 ! anion transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015701 name: bicarbonate transport namespace: biological_process def: "The directed movement of bicarbonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:krc] xref: Reactome:REACT_100525 xref: Reactome:REACT_100774 xref: Reactome:REACT_102789 xref: Reactome:REACT_103081 xref: Reactome:REACT_114123 xref: Reactome:REACT_19298 xref: Reactome:REACT_31940 xref: Reactome:REACT_58996 xref: Reactome:REACT_84164 xref: Reactome:REACT_92211 xref: Reactome:REACT_95367 xref: Reactome:REACT_95717 xref: Reactome:REACT_96648 is_a: GO:0015698 ! inorganic anion transport is_a: GO:0015711 ! organic anion transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015711 name: organic anion transport namespace: biological_process def: "The directed movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage." [GOC:ai, GOC:krc] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006820 ! anion transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015833 name: peptide transport namespace: biological_process def: "The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015837 name: amine transport namespace: biological_process def: "The directed movement of amines, including polyamines, organic compounds containing one or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai, ISBN:0198506732] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "amine/polyamine transport" RELATED [] is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015844 name: monoamine transport namespace: biological_process alt_id: GO:0015873 def: "The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [CHEBI:25375, GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0015837 ! amine transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015850 name: organic alcohol transport namespace: biological_process def: "The directed movement of organic alcohols into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An organic alcohol is any carbon-containing compound containing a hydroxyl group." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0071702 ! organic substance transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015872 name: dopamine transport namespace: biological_process def: "The directed movement of dopamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline." [GOC:ai] is_a: GO:0051937 ! catecholamine transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015874 name: norepinephrine transport namespace: biological_process def: "The directed movement of norepinephrine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Norepinephrine (3,4-dihydroxyphenyl-2-aminoethanol) is a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine." [GOC:ai, ISBN:0198506732] synonym: "levarterenol transport" EXACT [] synonym: "noradrenaline transport" EXACT [] is_a: GO:0051937 ! catecholamine transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016043 name: cellular component organization namespace: biological_process def: "A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component." [GOC:ai, GOC:jl, GOC:mah] subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell organisation" EXACT [] synonym: "cell organization and biogenesis" RELATED [GOC:mah] is_a: GO:0071840 ! cellular component organization or biogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016044 name: cellular membrane organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." [GOC:ai, GOC:dph, GOC:jl, GOC:mah] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "membrane organisation" EXACT [GOC:curators] synonym: "membrane organization and biogenesis" RELATED [GOC:mah] xref: Reactome:REACT_101524 xref: Reactome:REACT_103082 xref: Reactome:REACT_11123 xref: Reactome:REACT_29278 xref: Reactome:REACT_32337 xref: Reactome:REACT_33741 xref: Reactome:REACT_34084 xref: Reactome:REACT_78213 xref: Reactome:REACT_78288 xref: Reactome:REACT_83546 xref: Reactome:REACT_86557 xref: Reactome:REACT_87431 xref: Reactome:REACT_88307 xref: Reactome:REACT_91154 xref: Reactome:REACT_93714 xref: Reactome:REACT_95586 xref: Reactome:REACT_96516 xref: Reactome:REACT_97881 is_a: GO:0009987 ! cellular process is_a: GO:0061024 ! membrane organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016050 name: vesicle organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle." [GOC:mah] subset: goslim_pir ! PIR GO slim subset: goslim_yeast ! Yeast GO slim synonym: "vesicle organisation" EXACT [GOC:curators] synonym: "vesicle organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016051 name: carbohydrate biosynthetic process namespace: biological_process alt_id: GO:0006093 def: "The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y." [ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset synonym: "anabolic carbohydrate metabolic process" EXACT [] synonym: "anabolic carbohydrate metabolism" EXACT [] synonym: "carbohydrate anabolism" EXACT [] synonym: "carbohydrate biosynthesis" EXACT [] synonym: "carbohydrate formation" EXACT [] synonym: "carbohydrate synthesis" EXACT [] is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0009058 ! biosynthetic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016064 name: immunoglobulin mediated immune response namespace: biological_process def: "An immune response mediated by immunoglobulins, whether cell-bound or in solution." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was improved by GO_REF:0000022. It was renamed and redefined. synonym: "antibody-mediated immune response" EXACT [] is_a: GO:0019724 ! B cell mediated immunity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016192 name: vesicle-mediated transport namespace: biological_process alt_id: GO:0006899 def: "A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane." [GOC:ai, GOC:mah, ISBN:08789310662000] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_pombe ! Fission yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "nonselective vesicle transport" NARROW [] synonym: "protein sorting along secretory pathway" RELATED [] synonym: "vesicle trafficking" RELATED [] synonym: "vesicle transport" EXACT [] synonym: "vesicular transport" EXACT [GOC:mah] is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016265 name: death namespace: biological_process def: "A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism." [GOC:mah, ISBN:0877797099] comment: See also the biological process term 'apoptosis ; GO:0006915'. subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Wikipedia:Death is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016331 name: morphogenesis of embryonic epithelium namespace: biological_process def: "The process in which the anatomical structures of embryonic epithelia are generated and organized." [GOC:jl] is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0048598 ! embryonic morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016444 name: somatic cell DNA recombination namespace: biological_process def: "Recombination occurring within or between DNA molecules in somatic cells." [GOC:ma] is_a: GO:0006310 ! DNA recombination property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016445 name: somatic diversification of immunoglobulins namespace: biological_process def: "The somatic process that results in the generation of sequence diversity of immunoglobulins." [GOC:add, GOC:ma, ISBN:0781735149] synonym: "somatic diversification of antibodies" EXACT [] is_a: GO:0002200 ! somatic diversification of immune receptors relationship: part_of GO:0002377 ! immunoglobulin production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016446 name: somatic hypermutation of immunoglobulin genes namespace: biological_process def: "Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins." [GOC:add, ISBN:0781735149, PMID:11205330, PMID:11205333, PMID:14975236, PMID:7813007] synonym: "somatic hypermutation of antibody genes" EXACT [] is_a: GO:0002566 ! somatic diversification of immune receptors via somatic mutation is_a: GO:0016445 ! somatic diversification of immunoglobulins property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016447 name: somatic recombination of immunoglobulin gene segments namespace: biological_process def: "The process in which immunoglobulin genes are formed through recombination of the germline genetic elements, as known as immunoglobulin gene segments, within a single locus." [GOC:add, ISBN:0781735149] synonym: "somatic recombination of antibody gene segments" EXACT [] is_a: GO:0002562 ! somatic diversification of immune receptors via germline recombination within a single locus is_a: GO:0016445 ! somatic diversification of immunoglobulins property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016477 name: cell migration namespace: biological_process def: "The orderly movement of a cell from one site to another, often during the development of a multicellular organism or multicellular structure." [GOC:ems, GOC:pf] xref: Wikipedia:Cell_migration is_a: GO:0048870 ! cell motility property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0017145 name: stem cell division namespace: biological_process def: "The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types." [GOC:jid, ISBN:0582227089] synonym: "stem cell renewal" EXACT [] is_a: GO:0051301 ! cell division property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0018958 name: phenol-containing compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring." [CHEBI:33853, ISBN:0198506732] comment: Note that phenol metabolism is not included as a child of 'xenobiotic metabolism' because although it is synthesized industrially, phenol is also found naturally in animal wastes and other organic materials. It is often formed by the activity of microorganisms, which can chemically modify a variety of xenobiotic and naturally occurring phenolic compounds. subset: gosubset_prok ! Prokaryotic GO subset synonym: "carbolic acid metabolic process" EXACT [] synonym: "carbolic acid metabolism" EXACT [] synonym: "hydroxybenzene metabolic process" EXACT [] synonym: "hydroxybenzene metabolism" EXACT [] synonym: "phenol-containing compound metabolism" EXACT [GOC:curators] xref: UM-BBD_pathwayID:phe is_a: GO:0006066 ! alcohol metabolic process is_a: GO:0042537 ! benzene-containing compound metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019219 name: regulation of nucleobase-containing compound metabolic process namespace: biological_process def: "Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" RELATED [GOC:dph, GOC:tb] synonym: "regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0051171 ! regulation of nitrogen compound metabolic process is_a: GO:0080090 ! regulation of primary metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019222 name: regulation of metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of metabolism" EXACT [] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019230 name: proprioception namespace: biological_process def: "The series of events by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception is mediated by proprioceptors, sensory nerve terminals found in muscles, tendons, and joint capsules, which give information concerning movements and position of the body. The receptors in the labyrinth are sometimes also considered proprioceptors." [ISBN:072168677X, http://www.onelook.com/] xref: Wikipedia:Proprioception is_a: GO:0007600 ! sensory perception relationship: part_of GO:0050884 ! neuromuscular process controlling posture property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019233 name: sensory perception of pain namespace: biological_process def: "The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process." [http://www.onelook.com/] synonym: "nociception" EXACT [] synonym: "perception of physiological pain" NARROW [] xref: Wikipedia:Nociception is_a: GO:0007600 ! sensory perception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019236 name: response to pheromone namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "pheromone response" EXACT [] is_a: GO:0010033 ! response to organic substance property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019724 name: B cell mediated immunity namespace: biological_process def: "Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149] comment: This term was improved by GO_REF:0000022. It was moved. synonym: "B lymphocyte mediated immune effector process" EXACT [] synonym: "B lymphocyte mediated immunity" EXACT [] synonym: "B-cell mediated immune effector process" EXACT [] synonym: "B-cell mediated immunity" EXACT [] synonym: "B-lymphocyte mediated immune effector process" EXACT [] synonym: "B-lymphocyte mediated immunity" EXACT [] is_a: GO:0002449 ! lymphocyte mediated immunity is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019730 name: antimicrobial humoral response namespace: biological_process alt_id: GO:0006960 alt_id: GO:0019735 def: "An immune response against microbes mediated through a body fluid. Examples of this process are seen in the antimicrobial humoral response of Drosophila melanogaster and Mus musculus." [GOC:go_curators, GOC:mtg_sensu] is_a: GO:0006959 ! humoral immune response is_a: GO:0051707 ! response to other organism property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019752 name: carboxylic acid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-)." [ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset synonym: "carboxylic acid metabolism" EXACT [] is_a: GO:0043436 ! oxoacid metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019882 name: antigen processing and presentation namespace: biological_process alt_id: GO:0030333 def: "The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex." [GOC:add, GOC:mtg_15nov05, GO_REF:0000022, ISBN:0781735149, PMID:15771591, PMID:15928678] comment: This term was improved by GO_REF:0000022. It was renamed and redefined. synonym: "antigen presentation" EXACT [] synonym: "antigen processing" EXACT [] xref: Wikipedia:Antigen_presentation is_a: GO:0002376 ! immune system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019884 name: antigen processing and presentation of exogenous antigen namespace: biological_process def: "The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of exogenous origin on its cell surface in association with an MHC protein complex." [GOC:add, ISBN:0781735149, PMID:15771591, PMID:15928678] synonym: "antigen presentation, exogenous antigen" EXACT [] is_a: GO:0019882 ! antigen processing and presentation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019953 name: sexual reproduction namespace: biological_process def: "The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times." [ISBN:0387520546] xref: Wikipedia:Sexual_reproduction is_a: GO:0000003 ! reproduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0021700 name: developmental maturation namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure, cell or cellular component to attain its fully functional state." [GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, GO_REF:0000021] comment: This term was added by GO_REF:0000021. subset: goslim_generic ! Generic GO slim is_a: GO:0032502 ! developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0021915 name: neural tube development namespace: biological_process def: "The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium." [GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, GO_REF:0000021] comment: This term was added by GO_REF:0000021. is_a: GO:0048856 ! anatomical structure development relationship: part_of GO:0007399 ! nervous system development relationship: part_of GO:0043009 ! chordate embryonic development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022008 name: neurogenesis namespace: biological_process def: "Generation of cells within the nervous system." [GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, GO_REF:0000021] comment: This term was added by GO_REF:0000021. synonym: "nervous system cell generation" EXACT systematic_synonym [] synonym: "neural cell differentiation" RELATED [GOC:BHF, GOC:dph] xref: Wikipedia:Neurogenesis is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0007399 ! nervous system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022402 name: cell cycle process namespace: biological_process def: "A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events." [GOC:isa_complete] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0009987 ! cellular process relationship: part_of GO:0007049 ! cell cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022403 name: cell cycle phase namespace: biological_process def: "A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events." [GOC:dph, GOC:isa_complete, GOC:tb] is_a: GO:0022402 ! cell cycle process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022404 name: molting cycle process namespace: biological_process def: "A multicellular organismal process involved in the periodic casting off and regeneration of an outer covering of cuticle, feathers, hair, horns, skin." [GOC:isa_complete] is_a: GO:0042303 ! molting cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022405 name: hair cycle process namespace: biological_process def: "A multicellular organismal process involved in the cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body." [GOC:isa_complete] is_a: GO:0022404 ! molting cycle process relationship: part_of GO:0042633 ! hair cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022410 name: circadian sleep/wake cycle process namespace: biological_process def: "A behavioral process involved in the cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm." [GOC:isa_complete] is_a: GO:0048512 ! circadian behavior relationship: part_of GO:0042745 ! circadian sleep/wake cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022411 name: cellular component disassembly namespace: biological_process def: "A cellular process that results in the breakdown of a cellular component." [GOC:isa_complete] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell structure disassembly" EXACT [] is_a: GO:0016043 ! cellular component organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022412 name: cellular process involved in reproduction in multicellular organism namespace: biological_process def: "A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular organism." [GOC:isa_complete] synonym: "reproductive cellular process in multicellular organism" EXACT [GOC:curators] is_a: GO:0048610 ! cellular process involved in reproduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022414 name: reproductive process namespace: biological_process def: "A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents." [GOC:dph, GOC:isa_complete] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0008150 ! biological_process relationship: part_of GO:0000003 ! reproduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022600 name: digestive system process namespace: biological_process def: "A physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." [GOC:isa_complete, GOC:jid, GOC:mtg_cardio] is_a: GO:0003008 ! system process relationship: part_of GO:0007586 ! digestion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022603 name: regulation of anatomical structure morphogenesis namespace: biological_process def: "Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of morphogenesis" EXACT [] is_a: GO:0050793 ! regulation of developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022607 name: cellular component assembly namespace: biological_process def: "The aggregation, arrangement and bonding together of a cellular component." [GOC:isa_complete] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell structure assembly" EXACT [] is_a: GO:0016043 ! cellular component organization relationship: part_of GO:0044085 ! cellular component biogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0023051 name: regulation of signaling namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a signaling process." [GOC:mtg_signal] synonym: "regulation of signaling process" RELATED [GOC:bf] synonym: "regulation of signalling process" RELATED [GOC:mah] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0023052 name: signaling namespace: biological_process alt_id: GO:0023046 def: "The entirety of a process in which information is transmitted. This process begins with an active signal and ends when a cellular response has been triggered." [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling] comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim synonym: "signaling process" EXACT [] synonym: "signalling" EXACT [] synonym: "signalling process" RELATED [GOC:mah] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0023061 name: signal release namespace: biological_process def: "The process in which a signal is secreted or discharged into the extracellular medium from a cellular source." [GOC:mtg_signal] is_a: GO:0009987 ! cellular process relationship: part_of GO:0003001 ! generation of a signal involved in cell-cell signaling property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030030 name: cell projection organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, GOC:mah, http://www.cogsci.princeton.edu/~wn/] subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell projection organisation" EXACT [GOC:curators] synonym: "cell projection organization and biogenesis" RELATED [GOC:mah] synonym: "cell surface structure organization and biogenesis" RELATED [GOC:mah] is_a: GO:0071842 ! cellular component organization at cellular level property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030031 name: cell projection assembly namespace: biological_process def: "Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, GOC:mah, http://www.cogsci.princeton.edu/~wn/] subset: goslim_metagenomics ! Metagenomics GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell projection biogenesis" RELATED [GOC:mah] synonym: "formation of a cell surface projection" EXACT [] is_a: GO:0030030 ! cell projection organization is_a: GO:0071844 ! cellular component assembly at cellular level property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030072 name: peptide hormone secretion namespace: biological_process def: "The regulated release of a peptide hormone from a cell or organ." [GOC:mah] is_a: GO:0002790 ! peptide secretion is_a: GO:0046879 ! hormone secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030073 name: insulin secretion namespace: biological_process def: "The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin." [GOC:mah, ISBN:0198506732] is_a: GO:0030072 ! peptide hormone secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030097 name: hemopoiesis namespace: biological_process def: "The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates." [GOC:dgh, ISBN:0198506732] synonym: "blood cell biosynthesis" EXACT [] synonym: "blood cell formation" EXACT [] synonym: "haemopoiesis" EXACT [] synonym: "hematopoiesis" EXACT [] xref: Wikipedia:Haematopoiesis is_a: GO:0048534 ! hemopoietic or lymphoid organ development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030098 name: lymphocyte differentiation namespace: biological_process alt_id: GO:0046650 def: "The process in which a relatively unspecialized precursor cell acquires specialized features of a lymphocyte. A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [CL:0000542, GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "lymphocyte cell differentiation" EXACT [] synonym: "lymphocyte development" RELATED [GOC:add] synonym: "lymphocytic blood cell differentiation" EXACT [] is_a: GO:0002521 ! leukocyte differentiation is_a: GO:0046649 ! lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030099 name: myeloid cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages." [GOC:add, ISBN:0781735149] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0030097 ! hemopoiesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030101 name: natural killer cell activation namespace: biological_process def: "The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735140] synonym: "NK cell activation" EXACT [] is_a: GO:0046649 ! lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030103 name: vasopressin secretion namespace: biological_process def: "The regulated release of vasopressin from secretory granules into the blood." [GOC:mah] is_a: GO:0030072 ! peptide hormone secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030104 name: water homeostasis namespace: biological_process alt_id: GO:0018987 def: "Any process involved in the maintenance of an internal steady state of water within an organism or cell." [GOC:dph, GOC:mah, GOC:tb] synonym: "osmoregulation" RELATED [] synonym: "regulation of osmotic pressure" EXACT [] is_a: GO:0048878 ! chemical homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030154 name: cell differentiation namespace: biological_process def: "The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state." [ISBN:0198506732] subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Wikipedia:Cellular_differentiation is_a: GO:0048869 ! cellular developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030182 name: neuron differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron." [GOC:mah] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0048699 ! generation of neurons property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030183 name: B cell differentiation namespace: biological_process alt_id: GO:0042115 def: "The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GOC:mah, GOC:mtg_15nov05, GO_REF:0000022] comment: This term was improved by GO_REF:0000022. It was moved. Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "B cell development" RELATED [GOC:add] synonym: "B lymphocyte differentiation" EXACT [] synonym: "B-cell differentiation" EXACT [] synonym: "B-lymphocyte differentiation" EXACT [] is_a: GO:0030098 ! lymphocyte differentiation is_a: GO:0042113 ! B cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030202 name: heparin metabolic process namespace: biological_process def: "The chemical reactions and pathways involving heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells. They are similar to heparan sulfates but are of somewhat higher average Mr (6000-20000) and contain fewer N-acetyl groups and more N-sulfate and O-sulfate groups; they may be attached in the same manner to protein, forming proteoglycans. They consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues." [GOC:mah, ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset synonym: "heparan sulfate metabolic process" RELATED [] synonym: "heparin metabolism" EXACT [] is_a: GO:0006790 ! sulfur compound metabolic process is_a: GO:0030203 ! glycosaminoglycan metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030203 name: glycosaminoglycan metabolic process namespace: biological_process def: "The chemical reactions and pathways involving glycosaminoglycans, any one of a group of polysaccharides that contain amino sugars. Formerly known as mucopolysaccharides, they include hyaluronic acid and chondroitin, which provide lubrication in joints and form part of the matrix of cartilage. The three-dimensional structure of these molecules enables them to trap water, which forms a gel and gives glycosaminoglycans their elastic properties." [ISBN:0192800981] subset: gosubset_prok ! Prokaryotic GO subset synonym: "glycosaminoglycan metabolism" EXACT [] is_a: GO:0006022 ! aminoglycan metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030210 name: heparin biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of heparin, any member of a group of glycosaminoglycans of average Mr (6000-20000), consisting predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues." [GOC:mah, ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset synonym: "heparan sulfate biosynthetic process" RELATED [] synonym: "heparin anabolism" EXACT [] synonym: "heparin biosynthesis" EXACT [] synonym: "heparin formation" EXACT [] synonym: "heparin synthesis" EXACT [] is_a: GO:0006024 ! glycosaminoglycan biosynthetic process is_a: GO:0030202 ! heparin metabolic process is_a: GO:0044272 ! sulfur compound biosynthetic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030216 name: keratinocyte differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a keratinocyte." [GOC:dph, GOC:mah, GOC:sdb_2009, GOC:tb] synonym: "keratinocyte cell differentiation" EXACT [] is_a: GO:0009913 ! epidermal cell differentiation is_a: GO:0030855 ! epithelial cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030217 name: T cell differentiation namespace: biological_process alt_id: GO:0042112 alt_id: GO:0046652 def: "The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex." [GOC:jid, GOC:mah, GOC:mtg_15nov05, GO_REF:0000022] comment: This term was improved by GO_REF:0000022. It was moved. Note that the term 'thymocyte differentiation' was merged into this term because thymocytes are T cells, and thus the term was essentially redundant. Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "T cell development" RELATED [GOC:add] synonym: "T lymphocyte differentiation" EXACT [] synonym: "T-cell differentiation" EXACT [] synonym: "T-lymphocyte differentiation" EXACT [] is_a: GO:0030098 ! lymphocyte differentiation is_a: GO:0042110 ! T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030218 name: erythrocyte differentiation namespace: biological_process def: "The process in which a myeloid precursor cell acquires specializes features of an erythrocyte." [GOC:mah] synonym: "RBC differentiation" EXACT [CL:0000232] synonym: "erythrocyte cell differentiation" EXACT [] synonym: "erythropoiesis" EXACT [GOC:add, GOC:dph] synonym: "red blood cell differentiation" EXACT [CL:0000232] xref: Wikipedia:Erythropoiesis is_a: GO:0030099 ! myeloid cell differentiation relationship: part_of GO:0034101 ! erythrocyte homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030219 name: megakaryocyte differentiation namespace: biological_process def: "The process in which a myeloid precursor cell acquires specializes features of a megakaryocyte." [GOC:mah] synonym: "megakaryocyte cell differentiation" EXACT [] is_a: GO:0030099 ! myeloid cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030221 name: basophil differentiation namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires specialized features of a basophil cell." [GOC:jid, GOC:mah] synonym: "basophil cell differentiation" EXACT [] is_a: GO:0030851 ! granulocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030222 name: eosinophil differentiation namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires the specializes features of an eosinophil." [GOC:mah] synonym: "eosinophil cell differentiation" EXACT [] is_a: GO:0030851 ! granulocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030223 name: neutrophil differentiation namespace: biological_process def: "The process in which a myeloid precursor cell acquires the specialized features of a neutrophil." [GOC:mah] synonym: "neutrophil cell differentiation" EXACT [] synonym: "neutrophil granulocyte differentiation" EXACT [GOC:yaf] synonym: "neutrophil granulocytopoiesis" EXACT [GOC:yaf] is_a: GO:0030851 ! granulocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030224 name: monocyte differentiation namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a monocyte." [GOC:mah] synonym: "monocyte cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030225 name: macrophage differentiation namespace: biological_process def: "The process in which a relatively unspecialized monocyte acquires the specialized features of a macrophage." [GOC:add, ISBN:0781735149] synonym: "macrophage cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030261 name: chromosome condensation namespace: biological_process alt_id: GO:0000068 def: "The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells." [GOC:mah, ISBN:0815316194] is_a: GO:0006323 ! DNA packaging is_a: GO:0051276 ! chromosome organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030262 name: apoptotic nuclear change namespace: biological_process def: "A process that is carried out at the cellular level which results in the disassembly of the nucleus and contributes to apoptosis." [GOC:mah] is_a: GO:0006921 ! cellular component disassembly involved in apoptosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030263 name: apoptotic chromosome condensation namespace: biological_process def: "The compaction of chromatin during apoptosis." [GOC:mah] synonym: "pyknosis" EXACT [] xref: Wikipedia:Pyknosis is_a: GO:0030261 ! chromosome condensation relationship: part_of GO:0030262 ! apoptotic nuclear change property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030282 name: bone mineralization namespace: biological_process def: "The deposition of calcium phosphate in bone tissue." [GOC:mah] synonym: "bone calcification" NARROW [] is_a: GO:0031214 ! biomineral tissue development relationship: part_of GO:0001503 ! ossification property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030316 name: osteoclast differentiation namespace: biological_process def: "The process in which a relatively unspecialized monocyte acquires the specialized features of an osteoclast. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue." [CL:0000092, GOC:add, ISBN:0781735149, PMID:12161749] synonym: "osteoclast cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030317 name: sperm motility namespace: biological_process def: "Any process involved in the controlled movement of a sperm cell." [GOC:jl] synonym: "sperm movement" EXACT [] xref: Wikipedia:Sperm_motility is_a: GO:0048870 ! cell motility property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030334 name: regulation of cell migration namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell migration." [GOC:go_curators] is_a: GO:2000145 ! regulation of cell motility property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030335 name: positive regulation of cell migration namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of cell migration." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of cell migration" NARROW [] synonym: "stimulation of cell migration" NARROW [] synonym: "up regulation of cell migration" EXACT [] synonym: "up-regulation of cell migration" EXACT [] synonym: "upregulation of cell migration" EXACT [] is_a: GO:0030334 ! regulation of cell migration is_a: GO:2000147 ! positive regulation of cell motility property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030431 name: sleep namespace: biological_process def: "Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain." [ISBN:0192800981] subset: goslim_pir ! PIR GO slim synonym: "diapause" RELATED [] synonym: "dormancy" RELATED [] synonym: "lethargus" RELATED [] xref: Wikipedia:Sleep is_a: GO:0007610 ! behavior is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030593 name: neutrophil chemotaxis namespace: biological_process def: "The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding." [GOC:jl, ISBN:0198506732] is_a: GO:0030595 ! leukocyte chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030595 name: leukocyte chemotaxis namespace: biological_process def: "The movement of a leukocyte in response to an external stimulus." [GOC:add, GOC:jl] synonym: "immune cell chemotaxis" EXACT [] synonym: "leucocyte chemotaxis" EXACT [] is_a: GO:0050900 ! leukocyte migration is_a: GO:0060326 ! cell chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030851 name: granulocyte differentiation namespace: biological_process def: "The process in which a myeloid precursor cell acquires the specialized features of a granulocyte. Granulocytes are a class of leukocytes characterized by the presence of granules in their cytoplasm. These cells are active in allergic immune reactions such as arthritic inflammation and rashes. This class includes basophils, eosinophils and neutrophils." [GOC:ecd, http://life.nthu.edu.tw/~g864204/dict-search1.htm] synonym: "granulocyte cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030855 name: epithelial cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium." [GOC:ecd, PMID:11839751] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0060429 ! epithelium development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031099 name: regeneration namespace: biological_process def: "The regrowth of a lost or destroyed body part, such as an organ or tissue." [GOC:mah] xref: Wikipedia:Regeneration_(biology) is_a: GO:0009653 ! anatomical structure morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031214 name: biomineral tissue development namespace: biological_process def: "Formation of hard tissues that consist mainly of inorganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation." [PMID:15132736] synonym: "biomineral formation" RELATED [GOC:dph, GOC:tb] synonym: "biomineralization" EXACT [] synonym: "mineralization" EXACT [] xref: Wikipedia:Biomineralisation is_a: GO:0009888 ! tissue development relationship: part_of GO:0048513 ! organ development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031268 name: pseudopodium organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pseudopodium, a temporary protrusion or retractile process of a cell, associated with cellular movement." [GOC:pg] synonym: "pseudopodium organisation" EXACT [GOC:curators] synonym: "pseudopodium organization and biogenesis" RELATED [GOC:mah] is_a: GO:0030030 ! cell projection organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031294 name: lymphocyte costimulation namespace: biological_process def: "The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the B- or T cell receptor to augment B- or T cell activation." [ISBN:0781735149] synonym: "lymphocyte co-stimulation" EXACT [] is_a: GO:0002376 ! immune system process is_a: GO:0051251 ! positive regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031323 name: regulation of cellular metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of cellular metabolism" EXACT [] is_a: GO:0019222 ! regulation of metabolic process is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031325 name: positive regulation of cellular metabolic process namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of cellular metabolic process" NARROW [] synonym: "positive regulation of cellular metabolism" EXACT [] synonym: "stimulation of cellular metabolic process" NARROW [] synonym: "up regulation of cellular metabolic process" EXACT [] synonym: "up-regulation of cellular metabolic process" EXACT [] synonym: "upregulation of cellular metabolic process" EXACT [] xref: Reactome:REACT_101225 xref: Reactome:REACT_102187 xref: Reactome:REACT_102331 xref: Reactome:REACT_105293 xref: Reactome:REACT_108571 xref: Reactome:REACT_109170 xref: Reactome:REACT_2122 xref: Reactome:REACT_28360 xref: Reactome:REACT_31270 xref: Reactome:REACT_79603 xref: Reactome:REACT_80902 xref: Reactome:REACT_83058 xref: Reactome:REACT_84314 xref: Reactome:REACT_86633 xref: Reactome:REACT_87840 xref: Reactome:REACT_88060 xref: Reactome:REACT_91293 xref: Reactome:REACT_91429 xref: Reactome:REACT_91906 xref: Reactome:REACT_92487 xref: Reactome:REACT_99393 is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0048522 ! positive regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031347 name: regulation of defense response namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a defense response." [GOC:mah] is_a: GO:0080134 ! regulation of response to stress property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031348 name: negative regulation of defense response namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response." [GOC:mah] synonym: "down regulation of defense response" EXACT [] synonym: "down-regulation of defense response" EXACT [] synonym: "downregulation of defense response" EXACT [] synonym: "inhibition of defense response" NARROW [] is_a: GO:0031347 ! regulation of defense response is_a: GO:0048585 ! negative regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031349 name: positive regulation of defense response namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of a defense response." [GOC:mah] synonym: "activation of defense response" NARROW [] synonym: "stimulation of defense response" NARROW [] synonym: "up regulation of defense response" EXACT [] synonym: "up-regulation of defense response" EXACT [] synonym: "upregulation of defense response" EXACT [] is_a: GO:0031347 ! regulation of defense response is_a: GO:0048584 ! positive regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031424 name: keratinization namespace: biological_process def: "The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns." [GOC:dph, GOC:ebc, GOC:sdb_2009, GOC:tb] is_a: GO:0032502 ! developmental process relationship: part_of GO:0030216 ! keratinocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032101 name: regulation of response to external stimulus namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a response to an external stimulus." [GOC:mah] is_a: GO:0048583 ! regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032102 name: negative regulation of response to external stimulus namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to an external stimulus." [GOC:mah] synonym: "down regulation of response to external stimulus" EXACT [] synonym: "down-regulation of response to external stimulus" EXACT [] synonym: "downregulation of response to external stimulus" EXACT [] synonym: "inhibition of response to external stimulus" NARROW [] is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0048585 ! negative regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032103 name: positive regulation of response to external stimulus namespace: biological_process def: "Any process that activates, maintains or increases the rate of a response to an external stimulus." [GOC:mah] synonym: "activation of response to external stimulus" NARROW [] synonym: "stimulation of response to external stimulus" NARROW [] synonym: "up regulation of response to external stimulus" EXACT [] synonym: "up-regulation of response to external stimulus" EXACT [] synonym: "upregulation of response to external stimulus" EXACT [] is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0048584 ! positive regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032501 name: multicellular organismal process namespace: biological_process alt_id: GO:0050874 def: "Any biological process, occurring at the level of a multicellular organism, pertinent to its function." [GOC:curators, GOC:dph, GOC:isa_complete, GOC:tb] subset: goslim_pir ! PIR GO slim synonym: "organismal physiological process" EXACT [] is_a: GO:0008150 ! biological_process disjoint_from: GO:0051704 ! multi-organism process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032502 name: developmental process namespace: biological_process def: "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." [GOC:isa_complete] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "development" NARROW [] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032504 name: multicellular organism reproduction namespace: biological_process def: "The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents." [GOC:isa_complete, GOC:jid] is_a: GO:0000003 ! reproduction is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032606 name: type I interferon production namespace: biological_process def: "The appearance of type I interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families." [GOC:add, ISBN:0126896631, PMID:15546383, PMID:16681834] synonym: "interferon type I production" EXACT [] synonym: "type I IFN production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032609 name: interferon-gamma production namespace: biological_process def: "The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon." [GOC:add, GOC:mah] synonym: "IFNG production" EXACT [GOC:mah] synonym: "type II IFN production" EXACT [GOC:mah] synonym: "type II interferon production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032611 name: interleukin-1 beta production namespace: biological_process def: "The appearance of interleukin-1 beta due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-1 beta production" EXACT [] is_a: GO:0032612 ! interleukin-1 production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032612 name: interleukin-1 production namespace: biological_process def: "The appearance of interleukin-1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-1 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032613 name: interleukin-10 production namespace: biological_process def: "The appearance of interleukin-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-10 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032616 name: interleukin-13 production namespace: biological_process def: "The appearance of interleukin-13 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-13 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032620 name: interleukin-17 production namespace: biological_process def: "The appearance of any member of the interleukin-17 family of cytokines due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah, GOC:rv, PR:000001092, Wikipedia:Interleukin_17] synonym: "IL-17 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032623 name: interleukin-2 production namespace: biological_process def: "The appearance of interleukin-2 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-2 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032633 name: interleukin-4 production namespace: biological_process def: "The appearance of interleukin-4 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-4 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032635 name: interleukin-6 production namespace: biological_process def: "The appearance of interleukin-6 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-6 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032637 name: interleukin-8 production namespace: biological_process def: "The appearance of interleukin-8 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-8 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032638 name: interleukin-9 production namespace: biological_process def: "The appearance of interleukin-9 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] synonym: "IL-9 production" EXACT [] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032640 name: tumor necrosis factor production namespace: biological_process def: "The appearance of tumor necrosis factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:mah] comment: Note that this term refers only to the specific, original 'tumor necrosis factor' protein (TNF) and not other members of the tumor necrosis factor superfamily (those with the gene symbol root 'TNFSF'). synonym: "TNF production" EXACT [] synonym: "TNF-alpha production" EXACT [] synonym: "tumor necrosis factor-alpha production" EXACT [] is_a: GO:0071706 ! tumor necrosis factor superfamily cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032814 name: regulation of natural killer cell activation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of natural killer cell activation." [GOC:mah] synonym: "regulation of NK cell activation" EXACT [] is_a: GO:0051249 ! regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032816 name: positive regulation of natural killer cell activation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of natural killer cell activation." [GOC:mah] synonym: "activation of natural killer cell activation" NARROW [] synonym: "positive regulation of NK cell activation" EXACT [] synonym: "stimulation of natural killer cell activation" NARROW [] synonym: "up regulation of natural killer cell activation" EXACT [] synonym: "up-regulation of natural killer cell activation" EXACT [] synonym: "upregulation of natural killer cell activation" EXACT [] is_a: GO:0032814 ! regulation of natural killer cell activation is_a: GO:0051251 ! positive regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032844 name: regulation of homeostatic process namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of a homeostatic process." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032879 name: regulation of localization namespace: biological_process def: "Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of localisation" EXACT [GOC:mah] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032880 name: regulation of protein localization namespace: biological_process def: "Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location." [GOC:dph, GOC:mah, GOC:tb] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of protein localisation" EXACT [GOC:mah] is_a: GO:0032879 ! regulation of localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032940 name: secretion by cell namespace: biological_process def: "The controlled release of a substance by a cell." [GOC:mah] synonym: "cellular secretion" EXACT [] xref: Wikipedia:Secretion is_a: GO:0009987 ! cellular process is_a: GO:0046903 ! secretion is_a: GO:0051649 ! establishment of localization in cell property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032941 name: secretion by tissue namespace: biological_process def: "The controlled release of a substance by a tissue." [GOC:mah] synonym: "expulsion of gland contents" RELATED [GOC:mah] synonym: "tissue secretion" EXACT [] is_a: GO:0032501 ! multicellular organismal process is_a: GO:0046903 ! secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032943 name: mononuclear cell proliferation namespace: biological_process def: "The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form." [GOC:add] synonym: "PBMC proliferation" NARROW [] synonym: "peripheral blood mononuclear cell proliferation" NARROW [] is_a: GO:0070661 ! leukocyte proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032989 name: cellular component morphogenesis namespace: biological_process def: "The process in which cellular structures, including whole cells or cell parts, are generated and organized." [GOC:dph, GOC:mah, GOC:tb] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular structure morphogenesis" EXACT [GOC:dph, GOC:tb] is_a: GO:0009653 ! anatomical structure morphogenesis is_a: GO:0016043 ! cellular component organization is_a: GO:0048869 ! cellular developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033036 name: macromolecule localization namespace: biological_process def: "Any process in which a macromolecule is transported to, or maintained in, a specific location." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "macromolecule localisation" EXACT [GOC:mah] is_a: GO:0051179 ! localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033151 name: V(D)J recombination namespace: biological_process def: "The process in which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS)." [GOC:add, ISBN:0781700221, ISBN:0781735149] synonym: "V(D)J joining" EXACT [] synonym: "V-D-J joining" EXACT [] synonym: "V-D-J recombination" EXACT [] synonym: "V-J joining" EXACT [] synonym: "V-J recombination" EXACT [] xref: Wikipedia:V(D)J_recombination is_a: GO:0002562 ! somatic diversification of immune receptors via germline recombination within a single locus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033152 name: immunoglobulin V(D)J recombination namespace: biological_process def: "The process in which immunoglobulin gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS). For immunoglobulin heavy chains V, D, and J gene segments are joined, and for immunoglobulin light chains V and J gene segments are joined." [GOC:add, ISBN:0781735149] synonym: "immunoglobulin V(D)J joining" EXACT [GOC:add] synonym: "immunoglobulin V-D-J joining" NARROW [GOC:add] synonym: "immunoglobulin V-D-J recombination" NARROW [GOC:add] synonym: "immunoglobulin V-J joining" NARROW [GOC:add] synonym: "immunoglobulin V-J recombination" NARROW [GOC:add] is_a: GO:0016447 ! somatic recombination of immunoglobulin gene segments is_a: GO:0033151 ! V(D)J recombination property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033363 name: secretory granule organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion." [GOC:mah] synonym: "secretory granule organization and biogenesis" RELATED [GOC:mah] is_a: GO:0016050 ! vesicle organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033365 name: protein localization to organelle namespace: biological_process def: "A process in which a protein is transported to, or maintained in, a location within an organelle." [GOC:mah] synonym: "protein localisation to organelle" EXACT [GOC:mah] synonym: "protein localization in organelle" EXACT [GOC:mah] is_a: GO:0034613 ! cellular protein localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033366 name: protein localization in secretory granule namespace: biological_process def: "A process in which a protein is transported to, or maintained in, a location within a secretory granule." [GOC:mah] synonym: "protein localisation in secretory granule" EXACT [GOC:mah] synonym: "protein localization to secretory granule" EXACT [GOC:mah] is_a: GO:0033365 ! protein localization to organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033371 name: T cell secretory granule organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule in a T cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion." [GOC:mah] synonym: "T cell secretory granule organization and biogenesis" RELATED [GOC:mah] synonym: "T lymphocyte secretory granule organization" EXACT [] synonym: "T-cell secretory granule organization" EXACT [] synonym: "T-lymphocyte secretory granule maturation" RELATED [] synonym: "T-lymphocyte secretory granule organization" EXACT [] is_a: GO:0033363 ! secretory granule organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033374 name: protein localization in T cell secretory granule namespace: biological_process def: "A process in which a protein is transported to, or maintained in, a location within a secretory granule in a T cell." [GOC:mah] synonym: "protein localisation in T cell secretory granule" EXACT [GOC:mah] synonym: "protein localization in T lymphocyte secretory granule" EXACT [] synonym: "protein localization in T-cell secretory granule" EXACT [] synonym: "protein localization in T-lymphocyte secretory granule" EXACT [] is_a: GO:0033366 ! protein localization in secretory granule relationship: part_of GO:0033371 ! T cell secretory granule organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033375 name: protease localization in T cell secretory granule namespace: biological_process def: "Any process in which a protease is transported to, or maintained in, a location within a secretory granule in a T cell." [GOC:mah] synonym: "protease localisation in T cell secretory granule" EXACT [GOC:mah] synonym: "protease localization in T lymphocyte secretory granule" EXACT [] synonym: "protease localization in T-cell secretory granule" EXACT [] synonym: "protease localization in T-lymphocyte secretory granule" EXACT [] is_a: GO:0033374 ! protein localization in T cell secretory granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033380 name: granzyme B localization in T cell secretory granule namespace: biological_process def: "Any process in which the protease granzyme B is transported to, or maintained in, a location within a secretory granule in a T cell." [GOC:mah] synonym: "granzyme B localisation in T cell secretory granule" EXACT [GOC:mah] synonym: "granzyme B localization in T lymphocyte secretory granule" EXACT [] synonym: "granzyme B localization in T-cell secretory granule" EXACT [] synonym: "granzyme B localization in T-lymphocyte secretory granule" EXACT [] is_a: GO:0033375 ! protease localization in T cell secretory granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0034101 name: erythrocyte homeostasis namespace: biological_process def: "Any process of regulating the production and elimination of erythrocytes within an organism." [GOC:add, PMID:10694114, PMID:14754397] synonym: "RBC homeostasis" EXACT [CL:0000232] synonym: "red blood cell homeostasis" EXACT [CL:0000232] is_a: GO:0048872 ! homeostasis of number of cells property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0034102 name: erythrocyte clearance namespace: biological_process def: "The selective elimination of erythrocytes from the body by autoregulatory mechanisms." [GOC:add, PMID:12905029, PMID:14754397] comment: Note that this term is intended for annotation of self-gene products that lead to elimination of erythrocytes without the involvement of a symbiont. synonym: "RBC clearance" EXACT [CL:0000232] synonym: "neocytolysis" NARROW [PMID:14754397] synonym: "red blood cell clearance" EXACT [CL:0000232] is_a: GO:0048771 ! tissue remodeling relationship: part_of GO:0034101 ! erythrocyte homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0034220 name: ion transmembrane transport namespace: biological_process def: "A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore." [GOC:mah] synonym: "transmembrane ion transport" EXACT [GOC:dph, GOC:tb] xref: Reactome:REACT_100497 xref: Reactome:REACT_101721 xref: Reactome:REACT_103924 xref: Reactome:REACT_107347 xref: Reactome:REACT_108844 xref: Reactome:REACT_109050 xref: Reactome:REACT_25149 xref: Reactome:REACT_25300 xref: Reactome:REACT_25387 xref: Reactome:REACT_28672 xref: Reactome:REACT_30601 xref: Reactome:REACT_31166 xref: Reactome:REACT_32763 xref: Reactome:REACT_33389 xref: Reactome:REACT_34584 xref: Reactome:REACT_77153 xref: Reactome:REACT_77267 xref: Reactome:REACT_78982 xref: Reactome:REACT_79679 xref: Reactome:REACT_81685 xref: Reactome:REACT_82102 xref: Reactome:REACT_89671 xref: Reactome:REACT_89674 xref: Reactome:REACT_89758 xref: Reactome:REACT_89890 xref: Reactome:REACT_92146 xref: Reactome:REACT_93475 xref: Reactome:REACT_94109 xref: Reactome:REACT_94939 xref: Reactome:REACT_94986 xref: Reactome:REACT_97506 xref: Reactome:REACT_97619 xref: Reactome:REACT_98518 is_a: GO:0006811 ! ion transport is_a: GO:0055085 ! transmembrane transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0034613 name: cellular protein localization namespace: biological_process alt_id: GO:0016249 def: "Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell." [GOC:mah] synonym: "cellular protein localisation" EXACT [GOC:mah] synonym: "channel localizer activity" NARROW [GOC:mah] is_a: GO:0008104 ! protein localization is_a: GO:0070727 ! cellular macromolecule localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0034641 name: cellular nitrogen compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells." [GOC:mah] subset: goslim_generic ! Generic GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular nitrogen compound metabolism" EXACT [] xref: Reactome:REACT_102000 xref: Reactome:REACT_103710 xref: Reactome:REACT_107293 xref: Reactome:REACT_108179 xref: Reactome:REACT_109042 xref: Reactome:REACT_13 xref: Reactome:REACT_28699 xref: Reactome:REACT_29108 xref: Reactome:REACT_32429 xref: Reactome:REACT_33347 xref: Reactome:REACT_34326 xref: Reactome:REACT_55564 xref: Reactome:REACT_77741 xref: Reactome:REACT_82379 xref: Reactome:REACT_86268 xref: Reactome:REACT_90299 xref: Reactome:REACT_91959 xref: Reactome:REACT_93580 xref: Reactome:REACT_95666 xref: Reactome:REACT_98086 xref: Reactome:REACT_99241 is_a: GO:0006807 ! nitrogen compound metabolic process is_a: GO:0044237 ! cellular metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0034754 name: cellular hormone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells." [GOC:mah] is_a: GO:0042445 ! hormone metabolic process is_a: GO:0044237 ! cellular metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035051 name: cardiac cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell that will form part of the cardiac organ of an individual." [GOC:bf] synonym: "heart cell differentiation" RELATED [] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0007507 ! heart development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035082 name: axoneme assembly namespace: biological_process def: "The assembly and organization of an axoneme, the bundle of microtubules and associated proteins that forms the core of cilia and flagella in eukaryotic cells and is responsible for their movements." [GOC:bf, ISBN:0815316194] synonym: "axoneme biogenesis" RELATED [GOC:mah] is_a: GO:0001578 ! microtubule bundle formation is_a: GO:0030031 ! cell projection assembly property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035084 name: flagellar axoneme assembly namespace: biological_process def: "The assembly of the bundle of microtubules and associated proteins that forms the core of flagellar in eukaryotic cells and is responsible for their movements." [GOC:bf, ISBN:0815316194] synonym: "flagella axoneme assembly" EXACT [GOC:mah] synonym: "flagella axoneme biogenesis" RELATED [] synonym: "flagellar axoneme biogenesis" RELATED [] synonym: "flagellum axoneme assembly" EXACT [GOC:mah] synonym: "flagellum axoneme biogenesis" RELATED [] is_a: GO:0035082 ! axoneme assembly relationship: part_of GO:0009296 ! flagellum assembly property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035148 name: tube formation namespace: biological_process def: "Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow." [GOC:bf] synonym: "lumen formation in an anatomical structure" RELATED [GOC:dph, GOC:mah] synonym: "tube lumen formation" EXACT [GOC:dph, GOC:mah] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis relationship: part_of GO:0035239 ! tube morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035209 name: pupal development namespace: biological_process def: "The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects that undergo a complete metamorphosis." [GOC:bf, GOC:mtg_sensu] is_a: GO:0002165 ! instar larval or pupal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035239 name: tube morphogenesis namespace: biological_process def: "The process in which the anatomical structures of a tube are generated and organized. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GOC:bf, PMID:14624839] is_a: GO:0009653 ! anatomical structure morphogenesis relationship: part_of GO:0035295 ! tube development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035295 name: tube development namespace: biological_process def: "The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts." [PMID:12526790] is_a: GO:0048856 ! anatomical structure development relationship: part_of GO:0007275 ! multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035710 name: CD4-positive, alpha-beta T cell activation namespace: biological_process def: "The change in morphology and behavior of a CD4-positive, alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [CL:0000624, GOC:BHF] is_a: GO:0046631 ! alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035898 name: parathyroid hormone secretion namespace: biological_process def: "The regulated release of parathyroid hormone into the circulatory system." [GOC:cjm, PMID:12171519, PMID:21164021, PR:000013429] synonym: "PTH secretion" EXACT [PMID:12171519, PR:000013429] synonym: "parathormone secretion" EXACT [PR:000013429] synonym: "parathyrin secretion" EXACT [PR:000013429] is_a: GO:0060986 ! endocrine hormone secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0036072 name: direct ossification namespace: biological_process def: "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance, that does not require the replacement of preexisting tissues." [GO_REF:0000034] is_a: GO:0001503 ! ossification property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0036075 name: replacement ossification namespace: biological_process def: "Ossification that requires the replacement of a preexisting tissue prior to bone tissue formation." [GO_REF:0000034] synonym: "indirect ossification" EXACT [GO_REF:0000034] is_a: GO:0001503 ! ossification property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0040007 name: growth namespace: biological_process alt_id: GO:0048590 def: "The increase in size or mass of an entire organism, a part of an organism or a cell." [GOC:bf, GOC:ma] comment: See also the biological process term 'cell growth ; GO:0016049'. subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "growth pattern" RELATED [] synonym: "non-developmental growth" RELATED [GOC:mah] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0040011 name: locomotion namespace: biological_process def: "Self-propelled movement of a cell or organism from one location to another." [GOC:dgh] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0040012 name: regulation of locomotion namespace: biological_process def: "Any process that modulates the frequency, rate or extent of locomotion of a cell or organism." [GOC:ems] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0040016 name: embryonic cleavage namespace: biological_process def: "The first few specialized divisions of an activated animal egg." [GOC:clt, ISBN:0070524300] is_a: GO:0051301 ! cell division relationship: part_of GO:0009790 ! embryo development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0040017 name: positive regulation of locomotion namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of locomotion of a cell or organism." [GOC:go_curators] synonym: "activation of locomotion" NARROW [] synonym: "stimulation of locomotion" NARROW [] synonym: "up regulation of locomotion" EXACT [] synonym: "up-regulation of locomotion" EXACT [] synonym: "upregulation of locomotion" EXACT [] is_a: GO:0040012 ! regulation of locomotion is_a: GO:0048518 ! positive regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042044 name: fluid transport namespace: biological_process def: "The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042048 name: olfactory behavior namespace: biological_process def: "The actions or reactions of an organism in response to an odor." [GOC:jid] synonym: "behavioral response to scent" EXACT [] synonym: "behavioral response to smell" EXACT [] synonym: "behavioural response to odour" EXACT [] synonym: "behavioural response to scent" EXACT [] synonym: "behavioural response to smell" EXACT [] synonym: "olfactory behaviour" EXACT [] is_a: GO:0007635 ! chemosensory behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042060 name: wound healing namespace: biological_process def: "The series of events that restore integrity to a damaged tissue, following an injury." [GOC:bf, PMID:15269788] xref: Wikipedia:Wound_healing is_a: GO:0009611 ! response to wounding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042088 name: T-helper 1 type immune response namespace: biological_process def: "An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin." [GOC:add, ISBN:0781735149] synonym: "Th1 immune response" EXACT [] is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042092 name: type 2 immune response namespace: biological_process def: "An immune response which is associated with resistance to extracellular organisms such as helminths and pathological conditions such as allergy, which is orchestrated by the production of particular cytokines, most notably IL-4, IL-5, IL-10, and IL-13, by any of a variety of cell types including T-helper 2 cells, eosinophils, basophils, mast cells, and nuocytes, resulting in enhanced production of certain antibody isotypes and other effects." [GOC:add, ISBN:0781735149, PMID:18000958, PMID:18007680, PMID:20065995, PMID:20200518] synonym: "T-helper 2 type immune response" NARROW [GOC:add] synonym: "Th2 immune response" NARROW [GOC:add] is_a: GO:0006955 ! immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042093 name: T-helper cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized thymocyte acquires specialized features of a T-helper cell." [GOC:ebc] synonym: "T-helper cell development" RELATED [GOC:add] synonym: "helper T cell differentiation" EXACT [CL:0000912] is_a: GO:0002294 ! CD4-positive, alpha-beta T cell differentiation involved in immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042100 name: B cell proliferation namespace: biological_process alt_id: GO:0042114 def: "The expansion of a B cell population by cell division. Follows B cell activation." [GOC:jl] synonym: "B lymphocyte proliferation" EXACT [] synonym: "B-cell proliferation" EXACT [] synonym: "B-lymphocyte proliferation" EXACT [] is_a: GO:0042113 ! B cell activation is_a: GO:0046651 ! lymphocyte proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042110 name: T cell activation namespace: biological_process def: "The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [GOC:mgi_curators, ISBN:0781735140] synonym: "T lymphocyte activation" EXACT [] synonym: "T-cell activation" EXACT [] synonym: "T-lymphocyte activation" EXACT [] is_a: GO:0046649 ! lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042113 name: B cell activation namespace: biological_process def: "The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [GOC:mgi_curators, ISBN:0781735140] synonym: "B lymphocyte activation" EXACT [] synonym: "B-cell activation" EXACT [] synonym: "B-lymphocyte activation" EXACT [] is_a: GO:0046649 ! lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042127 name: regulation of cell proliferation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell proliferation." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042180 name: cellular ketone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups." [GOC:jl, ISBN:0787650153] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "ketone metabolism" EXACT [] is_a: GO:0044237 ! cellular metabolic process is_a: GO:0044281 ! small molecule metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042221 name: response to chemical stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus." [GOC:jl] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "response to chemical substance" EXACT [] is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042267 name: natural killer cell mediated cytotoxicity namespace: biological_process def: "The directed killing of a target cell by a natural killer cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors." [GOC:add] comment: Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in induction of apoptosis in the target cell. synonym: "NK cell mediated cell death" EXACT [] synonym: "NK cell mediated cell killing" EXACT [] synonym: "NK cell mediated cytolysis" RELATED [] synonym: "NK cell mediated cytotoxicity" EXACT [] synonym: "killer activity" RELATED [] synonym: "natural killer cell mediated cell death" EXACT [] synonym: "natural killer cell mediated cell killing" EXACT [] synonym: "natural killer cell mediated cytolysis" RELATED [] synonym: "natural killer-cell mediated cytolysis" RELATED [] is_a: GO:0001909 ! leukocyte mediated cytotoxicity is_a: GO:0002228 ! natural killer cell mediated immunity is_a: GO:0006917 ! induction of apoptosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042303 name: molting cycle namespace: biological_process def: "The periodic casting off and regeneration of an outer covering of cuticle, feathers, hair, horns, skin, etc." [GOC:jl, ISBN:0198506732] subset: goslim_pir ! PIR GO slim is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042330 name: taxis namespace: biological_process def: "The directed movement of a motile cell or organism in response to an external stimulus." [GOC:jl, ISBN:0192801023] subset: gosubset_prok ! Prokaryotic GO subset synonym: "directed movement in response to stimulus" EXACT [] xref: Wikipedia:Taxis is_a: GO:0009605 ! response to external stimulus is_a: GO:0040011 ! locomotion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042403 name: thyroid hormone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine." [GOC:jl, ISBN:0198506732] synonym: "thyroid hormone metabolism" EXACT [] is_a: GO:0006575 ! cellular modified amino acid metabolic process is_a: GO:0018958 ! phenol-containing compound metabolic process is_a: GO:0042445 ! hormone metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042445 name: hormone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone." [CHEBI:24621, GOC:jl] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "hormone metabolism" EXACT [] is_a: GO:0008152 ! metabolic process is_a: GO:0010817 ! regulation of hormone levels property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042446 name: hormone biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone." [CHEBI:24621, GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "hormone anabolism" EXACT [] synonym: "hormone biosynthesis" EXACT [] synonym: "hormone formation" EXACT [] synonym: "hormone synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0042445 ! hormone metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042476 name: odontogenesis namespace: biological_process alt_id: GO:0042477 def: "The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food." [GOC:jl, GOC:mah] synonym: "odontogenesis of calcareous or chitinous tooth" NARROW [] synonym: "odontogeny" EXACT [] synonym: "odontosis" EXACT [] synonym: "tooth development" EXACT [] xref: Wikipedia:Odontogenesis is_a: GO:0009887 ! organ morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042481 name: regulation of odontogenesis namespace: biological_process alt_id: GO:0042484 def: "Any process that modulates the frequency, rate or extent of the formation and development of a tooth or teeth." [GOC:jl] synonym: "regulation of odontogenesis of calcareous or chitinous tooth" NARROW [] synonym: "regulation of tooth development" EXACT [] is_a: GO:2000027 ! regulation of organ morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042483 name: negative regulation of odontogenesis namespace: biological_process alt_id: GO:0042486 def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the formation and development of a tooth or teeth." [GOC:jl] synonym: "down regulation of odontogenesis" EXACT [] synonym: "down-regulation of odontogenesis" EXACT [] synonym: "downregulation of odontogenesis" EXACT [] synonym: "inhibition of odontogenesis" NARROW [] synonym: "negative regulation of odontogenesis of calcareous or chitinous tooth" NARROW [] synonym: "negative regulation of tooth development" EXACT [] is_a: GO:0042481 ! regulation of odontogenesis is_a: GO:0051093 ! negative regulation of developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042492 name: gamma-delta T cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell. A gamma-delta T cell is a T cell that expresses a gamma-delta T cell receptor complex." [CL:0000798, GOC:jl] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "gamma-delta T cell development" RELATED [GOC:add] synonym: "gamma-delta T lymphocyte differentiation" EXACT [] synonym: "gamma-delta T-cell differentiation" EXACT [] synonym: "gamma-delta T-lymphocyte differentiation" EXACT [] is_a: GO:0030217 ! T cell differentiation is_a: GO:0046629 ! gamma-delta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042537 name: benzene-containing compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving benzene, C6H6, a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation, or any of its derivatives." [CHEBI:22712, GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "benzene and derivative metabolic process" EXACT [GOC:curators] synonym: "benzene and derivative metabolism" EXACT [] synonym: "benzene-containing compound metabolism" EXACT [GOC:mah] is_a: GO:0006725 ! cellular aromatic compound metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042554 name: superoxide anion generation namespace: biological_process def: "The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways." [GOC:jl, PMID:12359750] subset: gosubset_prok ! Prokaryotic GO subset synonym: "superoxide release" EXACT [GOC:hjd, GOC:mah] is_a: GO:0006801 ! superoxide metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042590 name: antigen processing and presentation of exogenous peptide antigen via MHC class I namespace: biological_process def: "The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex. The peptide antigen is typically, but not always, processed from a whole protein. Class I here refers to classical class I molecules." [GOC:add, ISBN:0781735149, PMID:15771591] synonym: "antigen presentation, exogenous antigen via MHC class I" EXACT [] synonym: "antigen presentation, exogenous antigen via major histocompatibility complex class I" EXACT [] synonym: "cross presentation" BROAD [] synonym: "cross priming" BROAD [] synonym: "cross-presentation" BROAD [] synonym: "cross-priming" BROAD [] synonym: "exogenous peptide antigen processing and presentation via MHC class I" EXACT [] xref: Reactome:REACT_111119 is_a: GO:0002474 ! antigen processing and presentation of peptide antigen via MHC class I is_a: GO:0002478 ! antigen processing and presentation of exogenous peptide antigen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042592 name: homeostatic process namespace: biological_process def: "Any biological process involved in the maintenance of an internal steady state." [GOC:jl, ISBN:0395825172] subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "homeostasis" RELATED [] is_a: GO:0065008 ! regulation of biological quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042633 name: hair cycle namespace: biological_process def: "The cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body." [GOC:go_curators, PMID:12230507] is_a: GO:0042303 ! molting cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042638 name: exogen namespace: biological_process def: "The shedding phase of the hair cycle." [PMID:12230507] synonym: "hair shedding" NARROW [] is_a: GO:0022405 ! hair cycle process relationship: part_of GO:0048820 ! hair follicle maturation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042692 name: muscle cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a muscle cell." [CL:0000187, GOC:go_curators] xref: Reactome:REACT_109683 xref: Reactome:REACT_113484 xref: Reactome:REACT_21303 xref: Reactome:REACT_32665 xref: Reactome:REACT_34056 xref: Reactome:REACT_77596 xref: Reactome:REACT_84060 xref: Reactome:REACT_84715 xref: Reactome:REACT_85310 xref: Reactome:REACT_90630 xref: Reactome:REACT_95727 xref: Reactome:REACT_95839 is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0061061 ! muscle structure development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042713 name: sperm ejaculation namespace: biological_process def: "The expulsion of seminal fluid, thick white fluid containing spermatozoa, from the male genital tract." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] is_a: GO:0048609 ! multicellular organismal reproductive process relationship: part_of GO:0007320 ! insemination property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042742 name: defense response to bacterium namespace: biological_process alt_id: GO:0042830 def: "Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "antibacterial peptide activity" RELATED [] synonym: "defence response to bacteria" EXACT [] synonym: "defence response to bacterium" EXACT [] synonym: "defense response to bacteria" EXACT [] is_a: GO:0006952 ! defense response is_a: GO:0009617 ! response to bacterium property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042745 name: circadian sleep/wake cycle namespace: biological_process def: "The cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm." [GOC:jl, http://www.sleepquest.com] is_a: GO:0048512 ! circadian behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042748 name: circadian sleep/wake cycle, non-REM sleep namespace: biological_process def: "All sleep stages in the circadian sleep/wake cycle other than REM sleep. These stages are characterized by a slowing of brain waves and other physiological functions." [GOC:jl, http://www.sleepquest.com] is_a: GO:0022410 ! circadian sleep/wake cycle process relationship: part_of GO:0050802 ! circadian sleep/wake cycle, sleep property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042749 name: regulation of circadian sleep/wake cycle namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the circadian sleep/wake cycle." [GOC:jl] is_a: GO:0022410 ! circadian sleep/wake cycle process is_a: GO:0042752 ! regulation of circadian rhythm is_a: GO:0050795 ! regulation of behavior is_a: GO:0051239 ! regulation of multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042752 name: regulation of circadian rhythm namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours." [GOC:dph, GOC:jl, GOC:tb] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042981 name: regulation of apoptotic process namespace: biological_process def: "Any process that modulates the occurrence or rate of cell death by apoptotic process." [GOC:jl, GOC:mtg_apoptosis] comment: This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. synonym: "apoptosis regulator activity" RELATED [] synonym: "regulation of apoptosis" NARROW [] xref: Reactome:REACT_106248 xref: Reactome:REACT_109234 xref: Reactome:REACT_109339 xref: Reactome:REACT_13648 xref: Reactome:REACT_29911 xref: Reactome:REACT_30641 xref: Reactome:REACT_79698 xref: Reactome:REACT_85908 xref: Reactome:REACT_86575 xref: Reactome:REACT_95946 xref: Reactome:REACT_96201 xref: Reactome:REACT_99944 is_a: GO:0043067 ! regulation of programmed cell death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043009 name: chordate embryonic development namespace: biological_process def: "The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching." [GOC:mtg_sensu] is_a: GO:0009792 ! embryo development ending in birth or egg hatching property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043011 name: myeloid dendritic cell differentiation namespace: biological_process def: "The process in which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin." [CL:0000782, GOC:jl] synonym: "Langerhans cell differentiation" EXACT [] xref: Wikipedia:Dendritic_cell is_a: GO:0001773 ! myeloid dendritic cell activation is_a: GO:0002573 ! myeloid leukocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043064 name: flagellum organization namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a flagellum, a long thin projection from a cell, used in movement." [GOC:curators, ISBN:0815316194] subset: gosubset_prok ! Prokaryotic GO subset synonym: "flagellum organisation" EXACT [GOC:curators] synonym: "flagellum organization and biogenesis" RELATED [GOC:mah] is_a: GO:0030030 ! cell projection organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043065 name: positive regulation of apoptotic process namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process." [GOC:jl, GOC:mtg_apoptosis] comment: This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is positively regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. synonym: "activation of apoptosis" NARROW [] synonym: "positive regulation of apoptosis" NARROW [] synonym: "stimulation of apoptosis" NARROW [] synonym: "up regulation of apoptosis" EXACT [] synonym: "up-regulation of apoptosis" EXACT [] synonym: "upregulation of apoptosis" EXACT [] is_a: GO:0042981 ! regulation of apoptotic process is_a: GO:0043068 ! positive regulation of programmed cell death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043067 name: regulation of programmed cell death namespace: biological_process alt_id: GO:0043070 def: "Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes." [GOC:jl] synonym: "regulation of non-apoptotic programmed cell death" NARROW [] is_a: GO:0010941 ! regulation of cell death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043068 name: positive regulation of programmed cell death namespace: biological_process alt_id: GO:0043071 def: "Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes." [GOC:jl] synonym: "activation of programmed cell death" NARROW [] synonym: "positive regulation of non-apoptotic programmed cell death" NARROW [] synonym: "stimulation of programmed cell death" NARROW [] synonym: "up regulation of programmed cell death" EXACT [] synonym: "up-regulation of programmed cell death" EXACT [] synonym: "upregulation of programmed cell death" EXACT [] is_a: GO:0010942 ! positive regulation of cell death is_a: GO:0043067 ! regulation of programmed cell death property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043084 name: penile erection namespace: biological_process def: "The hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow." [GOC:jl, Wikipedia:Penile_erection] xref: Wikipedia:Erection#Penile_erection is_a: GO:0048609 ! multicellular organismal reproductive process relationship: part_of GO:0007620 ! copulation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043129 name: surfactant homeostasis namespace: biological_process def: "Any process involved in the maintenance of a steady-state level of the surface-active lipoprotein mixture which coats the alveoli." [PMID:9751757] is_a: GO:0048875 ! chemical homeostasis within a tissue property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043133 name: hindgut contraction namespace: biological_process def: "A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the hindgut. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The hindgut is the posterior part of the alimentary canal, including the rectum, and the large intestine." [GOC:jl, GOC:mtg_muscle, UBERON:0001046] is_a: GO:0006939 ! smooth muscle contraction is_a: GO:0022600 ! digestive system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043134 name: regulation of hindgut contraction namespace: biological_process def: "Any process that modulates the frequency, rate or extent of muscle contraction of the hindgut, the posterior part of the alimentary canal, including the rectum, and the large intestine." [GOC:jl, UBERON:0001046] is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0044058 ! regulation of digestive system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043170 name: macromolecule metabolic process namespace: biological_process alt_id: GO:0043283 def: "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "biopolymer metabolic process" EXACT [GOC:mtg_chebi_dec09] synonym: "macromolecule metabolism" EXACT [] is_a: GO:0008152 ! metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043277 name: apoptotic cell clearance namespace: biological_process def: "The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte." [GOC:rk, PMID:14685684] comment: Note that unlike mammals or Drosophila, C. elegans (and many lower organisms) do not have professional macrophages/phagocytes, instead cell corpses are engulfed by neighboring cells. Cell types that can function as engulfing cells include hypodermal cells, gonadal sheath cells, pharyngeal muscle cells, and intestinal cells. synonym: "apoptotic cell removal" EXACT [] synonym: "efferocytosis" EXACT [PMID:17548650] synonym: "programmed cell clearance" EXACT [] is_a: GO:0006909 ! phagocytosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043367 name: CD4-positive, alpha-beta T cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized T cell acquires specialized features of a mature CD4-positive, alpha-beta T cell." [CL:0000624, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "CD4-positive, alpha beta T cell development" RELATED [GOC:add] synonym: "CD4-positive, alpha beta T cell differentiation" EXACT [GOC:bf] synonym: "CD4-positive, alpha-beta T lymphocyte differentiation" EXACT [] synonym: "CD4-positive, alpha-beta T-cell differentiation" EXACT [] synonym: "CD4-positive, alpha-beta T-lymphocyte differentiation" EXACT [] is_a: GO:0035710 ! CD4-positive, alpha-beta T cell activation is_a: GO:0046632 ! alpha-beta T cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043368 name: positive T cell selection namespace: biological_process def: "The process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death." [ISBN:0781735149, PMID:12414722] synonym: "positive T lymphocyte selection" EXACT [] synonym: "positive T-cell selection" EXACT [] synonym: "positive T-lymphocyte selection" EXACT [] is_a: GO:0045058 ! T cell selection property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043370 name: regulation of CD4-positive, alpha-beta T cell differentiation namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of CD4-positive, alpha beta T cell differentiation." [GOC:add, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "regulation of CD4-positive T lymphocyte differentiation" EXACT [] synonym: "regulation of CD4-positive T-cell differentiation" EXACT [] synonym: "regulation of CD4-positive T-lymphocyte differentiation" EXACT [] synonym: "regulation of CD4-positive, alpha beta T cell development" RELATED [GOC:add] synonym: "regulation of CD4-positive, alpha beta T cell differentiation" EXACT [GOC:bf] synonym: "regulation of CD4-positive, alpha beta T lymphocyte differentiation" EXACT [] synonym: "regulation of CD4-positive, alpha beta T-cell differentiation" EXACT [] synonym: "regulation of CD4-positive, alpha beta T-lymphocyte differentiation" EXACT [] is_a: GO:0046637 ! regulation of alpha-beta T cell differentiation is_a: GO:2000514 ! regulation of CD4-positive, alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043372 name: positive regulation of CD4-positive, alpha-beta T cell differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of CD4-positive, alpha beta T cell differentiation." [GOC:add, ISBN:0781735149] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "activation of CD4-positive, alpha beta T cell differentiation" NARROW [] synonym: "positive regulation of CD4-positive T lymphocyte differentiation" EXACT [] synonym: "positive regulation of CD4-positive T-cell differentiation" EXACT [] synonym: "positive regulation of CD4-positive T-lymphocyte differentiation" EXACT [] synonym: "positive regulation of CD4-positive, alpha beta T cell development" RELATED [GOC:add] synonym: "positive regulation of CD4-positive, alpha beta T cell differentiation" EXACT [GOC:bf] synonym: "positive regulation of CD4-positive, alpha beta T lymphocyte differentiation" EXACT [] synonym: "positive regulation of CD4-positive, alpha beta T-cell differentiation" EXACT [] synonym: "positive regulation of CD4-positive, alpha beta T-lymphocyte differentiation" EXACT [] synonym: "stimulation of CD4-positive, alpha beta T cell differentiation" NARROW [] synonym: "up regulation of CD4-positive, alpha beta T cell differentiation" EXACT [] synonym: "up-regulation of CD4-positive, alpha beta T cell differentiation" EXACT [] synonym: "upregulation of CD4-positive, alpha beta T cell differentiation" EXACT [] is_a: GO:0043370 ! regulation of CD4-positive, alpha-beta T cell differentiation is_a: GO:0046638 ! positive regulation of alpha-beta T cell differentiation is_a: GO:2000516 ! positive regulation of CD4-positive, alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043436 name: oxoacid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any oxoacid; an oxoacid is a compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons)." [CHEBI:24833] subset: gosubset_prok ! Prokaryotic GO subset synonym: "keto acid metabolic process" EXACT [] synonym: "keto acid metabolism" EXACT [] synonym: "ketoacid metabolic process" EXACT [] synonym: "ketoacid metabolism" EXACT [] synonym: "oxo acid metabolic process" EXACT [] synonym: "oxo acid metabolism" EXACT [] synonym: "oxoacid metabolism" EXACT [] is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0042180 ! cellular ketone metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043576 name: regulation of respiratory gaseous exchange namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment." [GOC:jl] is_a: GO:0051239 ! regulation of multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043695 name: detection of pheromone namespace: biological_process def: "The series of events in which a pheromone stimulus is received by a cell and converted into a molecular signal." [GOC:mah] is_a: GO:0009593 ! detection of chemical stimulus is_a: GO:0019236 ! response to pheromone property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044057 name: regulation of system process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a system process, a multicellular organismal process carried out by any of the organs or tissues in an organ system." [GOC:jl] is_a: GO:0051239 ! regulation of multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044058 name: regulation of digestive system process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." [GOC:jl] is_a: GO:0044057 ! regulation of system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044085 name: cellular component biogenesis namespace: biological_process def: "A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component." [GOC:jl, GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0071840 ! cellular component organization or biogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044106 name: cellular amine metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom." [GOC:jl] is_a: GO:0009308 ! amine metabolic process is_a: GO:0034641 ! cellular nitrogen compound metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044237 name: cellular metabolic process namespace: biological_process def: "The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular metabolism" EXACT [] synonym: "intermediary metabolism" RELATED [GOC:mah] is_a: GO:0008152 ! metabolic process is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044238 name: primary metabolic process namespace: biological_process def: "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators, http://www.metacyc.org] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "primary metabolism" EXACT [] is_a: GO:0008152 ! metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044249 name: cellular biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular anabolism" EXACT [] synonym: "cellular biosynthesis" EXACT [] synonym: "cellular formation" EXACT [] synonym: "cellular synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0044237 ! cellular metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044260 name: cellular macromolecule metabolic process namespace: biological_process alt_id: GO:0034960 def: "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells." [CHEBI:33694, GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular biopolymer metabolic process" EXACT [GOC:mtg_chebi_dec09] synonym: "cellular macromolecule metabolism" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:0044237 ! cellular metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044272 name: sulfur compound biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "sulfur biosynthesis" NARROW [] synonym: "sulfur biosynthetic process" NARROW [] synonym: "sulfur compound anabolism" EXACT [] synonym: "sulfur compound biosynthesis" EXACT [] synonym: "sulfur compound formation" EXACT [] synonym: "sulfur compound synthesis" EXACT [] is_a: GO:0006790 ! sulfur compound metabolic process is_a: GO:0044249 ! cellular biosynthetic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044281 name: small molecule metabolic process namespace: biological_process def: "The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule." [GOC:curators, GOC:pde, GOC:vw] comment: Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides. subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim synonym: "small molecule metabolism" EXACT [] xref: Reactome:REACT_111217 xref: Reactome:REACT_112077 xref: Reactome:REACT_112140 xref: Reactome:REACT_112621 xref: Reactome:REACT_112912 xref: Reactome:REACT_113131 xref: Reactome:REACT_113305 xref: Reactome:REACT_113457 xref: Reactome:REACT_113568 xref: Reactome:REACT_113610 xref: Reactome:REACT_113934 xref: Reactome:REACT_114081 xref: Reactome:REACT_114137 xref: Reactome:REACT_114421 xref: Reactome:REACT_114473 xref: Reactome:REACT_114495 xref: Reactome:REACT_114668 xref: Reactome:REACT_114983 xref: Reactome:REACT_115063 xref: Reactome:REACT_115388 xref: Reactome:REACT_115420 xref: Reactome:REACT_115655 is_a: GO:0008152 ! metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045058 name: T cell selection namespace: biological_process def: "The process in which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation." [ISBN:0781735149, PMID:12414722] synonym: "T lymphocyte selection" EXACT [] synonym: "T-cell selection" EXACT [] synonym: "T-lymphocyte selection" EXACT [] xref: Wikipedia:Thymocyte is_a: GO:0002376 ! immune system process relationship: part_of GO:0030217 ! T cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045063 name: T-helper 1 cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized T cell acquires the specialized features of a T-helper 1 (Th1) cell. A Th1 cell is a CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive and produces interferon-gamma." [CL:0000545, GOC:ebc] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "T-helper 1 cell development" RELATED [GOC:add] is_a: GO:0042093 ! T-helper cell differentiation relationship: part_of GO:0042088 ! T-helper 1 type immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045064 name: T-helper 2 cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized T cell acquires specialized features of a T-helper 2 (Th2) cell. A Th2 cell is a CD4-positive, alpha-beta T cell that has the phenotype GATA-3-positive and produces interleukin-4." [CL:0000546, GOC:ebc] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "T-helper 2 cell development" RELATED [GOC:add] is_a: GO:0042093 ! T-helper cell differentiation relationship: part_of GO:0042092 ! type 2 immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045087 name: innate immune response namespace: biological_process alt_id: GO:0002226 def: "Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens." [GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu, GO_REF:0000022] comment: This term was improved by GO_REF:0000022. It was moved. synonym: "innate immunity" EXACT [GOC:pg] synonym: "nonspecific immune response" EXACT [] xref: Reactome:REACT_101086 xref: Reactome:REACT_108180 xref: Reactome:REACT_110518 xref: Reactome:REACT_31297 xref: Reactome:REACT_32992 xref: Reactome:REACT_6802 xref: Reactome:REACT_78575 xref: Reactome:REACT_81815 xref: Reactome:REACT_81962 xref: Reactome:REACT_86987 xref: Reactome:REACT_88681 xref: Reactome:REACT_90618 xref: Reactome:REACT_90753 xref: Reactome:REACT_94451 xref: Reactome:REACT_95471 xref: Reactome:REACT_95642 xref: Reactome:REACT_99610 xref: Wikipedia:Innate_immune_system is_a: GO:0006952 ! defense response is_a: GO:0006955 ! immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045184 name: establishment of protein localization namespace: biological_process def: "The directed movement of a protein to a specific location." [GOC:bf] subset: gosubset_prok ! Prokaryotic GO subset synonym: "establishment of protein localisation" EXACT [GOC:mah] synonym: "protein positioning" EXACT [] synonym: "protein recruitment" EXACT [] is_a: GO:0051234 ! establishment of localization relationship: part_of GO:0008104 ! protein localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045187 name: regulation of circadian sleep/wake cycle, sleep namespace: biological_process def: "Any process that modulates the frequency, rate or extent of sleep; a readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals." [GOC:jl, ISBN:0192800981] synonym: "regulation of sleep" EXACT [] is_a: GO:0042749 ! regulation of circadian sleep/wake cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045188 name: regulation of circadian sleep/wake cycle, non-REM sleep namespace: biological_process def: "Any process that modulates the frequency, rate or extent of non-rapid eye movement sleep." [GOC:go_curators] synonym: "regulation of non-REM sleep" EXACT [] is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045190 name: isotype switching namespace: biological_process def: "The switching of activated B cells from IgM biosynthesis to biosynthesis of other isotypes of immunoglobulin, accomplished through a recombination process involving an intrachromosomal deletion involving switch regions that reside 5' of each constant region gene segment in the immunoglobulin heavy chain locus." [ISBN:0781735149] comment: Note that IgM and IgD can be coexpressed by B cells via an alternate splicing mechanism, but true recombinational isotype switching to IgD has been demonstrated as well. Note that this term is best used to annotate gene products which are involved in the mechanism of DNA recombination used in isotype switching, like the B cell specific Swap70 factor in the mouse, rather than gene products which promote isotype switching such as cytokines or co-stimulatory molecules, which should instead be annotated to 'regulation of isotype switching ; GO:0045191'. synonym: "class switch recombination" EXACT [] synonym: "class switching" EXACT [] synonym: "isotype switch recombination" EXACT [] xref: Wikipedia:Immunoglobulin_class_switching is_a: GO:0002204 ! somatic recombination of immunoglobulin genes involved in immune response is_a: GO:0002312 ! B cell activation involved in immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045191 name: regulation of isotype switching namespace: biological_process def: "Any process that modulates the frequency, rate or extent of isotype switching." [GOC:ai] synonym: "regulation of class switch recombination" EXACT [] synonym: "regulation of class switching" EXACT [] synonym: "regulation of isotype switch recombination" EXACT [] is_a: GO:0000018 ! regulation of DNA recombination is_a: GO:0002637 ! regulation of immunoglobulin production is_a: GO:0002889 ! regulation of immunoglobulin mediated immune response is_a: GO:0050864 ! regulation of B cell activation is_a: GO:2000026 ! regulation of multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045321 name: leukocyte activation namespace: biological_process def: "A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor." [GOC:add] synonym: "immune cell activation" EXACT [] synonym: "leucocyte activation" EXACT [] xref: Wikipedia:Immunologic_activation is_a: GO:0001775 ! cell activation is_a: GO:0002376 ! immune system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045444 name: fat cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat." [CL:0000136, GOC:go_curators] synonym: "adipocyte cell differentiation" EXACT [] synonym: "adipocyte differentiation" EXACT [] synonym: "adipogenesis" RELATED [] synonym: "adipose cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045453 name: bone resorption namespace: biological_process def: "The process in which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products." [GOC:mah, PMID:10968780] xref: Wikipedia:Bone_resorption is_a: GO:0001894 ! tissue homeostasis relationship: part_of GO:0046849 ! bone remodeling property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045580 name: regulation of T cell differentiation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of T cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "regulation of T cell development" RELATED [GOC:add] synonym: "regulation of T lymphocyte differentiation" EXACT [] synonym: "regulation of T-cell differentiation" EXACT [] synonym: "regulation of T-lymphocyte differentiation" EXACT [] is_a: GO:0045619 ! regulation of lymphocyte differentiation is_a: GO:0050863 ! regulation of T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045582 name: positive regulation of T cell differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of T cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "activation of T cell differentiation" NARROW [] synonym: "positive regulation of T cell development" RELATED [GOC:add] synonym: "positive regulation of T lymphocyte differentiation" EXACT [] synonym: "positive regulation of T-cell differentiation" EXACT [] synonym: "positive regulation of T-lymphocyte differentiation" EXACT [] synonym: "stimulation of T cell differentiation" NARROW [] synonym: "up regulation of T cell differentiation" EXACT [] synonym: "up-regulation of T cell differentiation" EXACT [] synonym: "upregulation of T cell differentiation" EXACT [] is_a: GO:0045580 ! regulation of T cell differentiation is_a: GO:0045621 ! positive regulation of lymphocyte differentiation is_a: GO:0050870 ! positive regulation of T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045595 name: regulation of cell differentiation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell differentiation, the process in which relatively unspecialized cells acquire specialized structural and functional features." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0050793 ! regulation of developmental process is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045597 name: positive regulation of cell differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of cell differentiation." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of cell differentiation" NARROW [] synonym: "stimulation of cell differentiation" NARROW [] synonym: "up regulation of cell differentiation" EXACT [] synonym: "up-regulation of cell differentiation" EXACT [] synonym: "upregulation of cell differentiation" EXACT [] is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051094 ! positive regulation of developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045619 name: regulation of lymphocyte differentiation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of lymphocyte differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "regulation of lymphocyte development" RELATED [GOC:add] is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:0051249 ! regulation of lymphocyte activation is_a: GO:2000026 ! regulation of multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045621 name: positive regulation of lymphocyte differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of lymphocyte differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "activation of lymphocyte differentiation" NARROW [] synonym: "positive regulation of lymphocyte development" RELATED [GOC:add] synonym: "stimulation of lymphocyte differentiation" NARROW [] synonym: "up regulation of lymphocyte differentiation" EXACT [] synonym: "up-regulation of lymphocyte differentiation" EXACT [] synonym: "upregulation of lymphocyte differentiation" EXACT [] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045619 ! regulation of lymphocyte differentiation is_a: GO:0051251 ! positive regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045622 name: regulation of T-helper cell differentiation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of T-helper cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "regulation of T-helper cell development" RELATED [GOC:add] is_a: GO:0002697 ! regulation of immune effector process is_a: GO:0043370 ! regulation of CD4-positive, alpha-beta T cell differentiation is_a: GO:0050776 ! regulation of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045624 name: positive regulation of T-helper cell differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of T-helper cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "activation of T-helper cell differentiation" NARROW [] synonym: "positive regulation of T-helper cell development" RELATED [GOC:add] synonym: "stimulation of T-helper cell differentiation" NARROW [] synonym: "up regulation of T-helper cell differentiation" EXACT [] synonym: "up-regulation of T-helper cell differentiation" EXACT [] synonym: "upregulation of T-helper cell differentiation" EXACT [] is_a: GO:0002699 ! positive regulation of immune effector process is_a: GO:0043372 ! positive regulation of CD4-positive, alpha-beta T cell differentiation is_a: GO:0045622 ! regulation of T-helper cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045625 name: regulation of T-helper 1 cell differentiation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of T-helper 1 cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "regulation of T-helper 1 cell development" RELATED [GOC:add] is_a: GO:0002825 ! regulation of T-helper 1 type immune response is_a: GO:0045622 ! regulation of T-helper cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045627 name: positive regulation of T-helper 1 cell differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of T-helper 1 cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "activation of T-helper 1 cell differentiation" NARROW [] synonym: "positive regulation of T-helper 1 cell development" RELATED [GOC:add] synonym: "stimulation of T-helper 1 cell differentiation" NARROW [] synonym: "up regulation of T-helper 1 cell differentiation" EXACT [] synonym: "up-regulation of T-helper 1 cell differentiation" EXACT [] synonym: "upregulation of T-helper 1 cell differentiation" EXACT [] is_a: GO:0045624 ! positive regulation of T-helper cell differentiation is_a: GO:0045625 ! regulation of T-helper 1 cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045628 name: regulation of T-helper 2 cell differentiation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of T-helper 2 cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "regulation of T-helper 2 cell development" RELATED [GOC:add] is_a: GO:0002828 ! regulation of type 2 immune response is_a: GO:0045622 ! regulation of T-helper cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045630 name: positive regulation of T-helper 2 cell differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of T-helper 2 cell differentiation." [GOC:go_curators] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "activation of T-helper 2 cell differentiation" NARROW [] synonym: "positive regulation of T-helper 2 cell development" RELATED [GOC:add] synonym: "stimulation of T-helper 2 cell differentiation" NARROW [] synonym: "up regulation of T-helper 2 cell differentiation" EXACT [] synonym: "up-regulation of T-helper 2 cell differentiation" EXACT [] synonym: "upregulation of T-helper 2 cell differentiation" EXACT [] is_a: GO:0045624 ! positive regulation of T-helper cell differentiation is_a: GO:0045628 ! regulation of T-helper 2 cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045730 name: respiratory burst namespace: biological_process def: "A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals." [ISBN:0198506732] synonym: "metabolic burst" EXACT [] synonym: "oxidative burst" EXACT [] xref: Wikipedia:Respiratory_burst is_a: GO:0008152 ! metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045830 name: positive regulation of isotype switching namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of isotype switching." [GOC:go_curators] synonym: "activation of isotype switching" NARROW [] synonym: "positive regulation of class switch recombination" EXACT [] synonym: "positive regulation of class switching" EXACT [] synonym: "positive regulation of isotype switch recombination" EXACT [] synonym: "stimulation of isotype switching" NARROW [] synonym: "up regulation of isotype switching" EXACT [] synonym: "up-regulation of isotype switching" EXACT [] synonym: "upregulation of isotype switching" EXACT [] is_a: GO:0002699 ! positive regulation of immune effector process is_a: GO:0045191 ! regulation of isotype switching is_a: GO:0045911 ! positive regulation of DNA recombination is_a: GO:0050871 ! positive regulation of B cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045911 name: positive regulation of DNA recombination namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of DNA recombination." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of DNA recombination" NARROW [] synonym: "stimulation of DNA recombination" NARROW [] synonym: "up regulation of DNA recombination" EXACT [] synonym: "up-regulation of DNA recombination" EXACT [] synonym: "upregulation of DNA recombination" EXACT [] is_a: GO:0000018 ! regulation of DNA recombination is_a: GO:0051054 ! positive regulation of DNA metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045935 name: positive regulation of nucleobase-containing compound metabolic process namespace: biological_process def: "Any cellular process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" NARROW [] synonym: "positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" RELATED [GOC:dph, GOC:tb] synonym: "positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] synonym: "stimulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" NARROW [] synonym: "up regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" EXACT [] synonym: "up-regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" EXACT [] synonym: "upregulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" EXACT [] is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0051173 ! positive regulation of nitrogen compound metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046629 name: gamma-delta T cell activation namespace: biological_process def: "The change in morphology and behavior of a gamma-delta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [GOC:add] synonym: "gamma-delta T lymphocyte activation" EXACT [] synonym: "gamma-delta T-cell activation" EXACT [] synonym: "gamma-delta T-lymphocyte activation" EXACT [] is_a: GO:0042110 ! T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046631 name: alpha-beta T cell activation namespace: biological_process def: "The change in morphology and behavior of an alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [GOC:add] synonym: "alpha-beta T lymphocyte activation" EXACT [] synonym: "alpha-beta T-cell activation" EXACT [] synonym: "alpha-beta T-lymphocyte activation" EXACT [] is_a: GO:0042110 ! T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046632 name: alpha-beta T cell differentiation namespace: biological_process def: "The process in which a precursor cell type acquires the specialized features of an alpha-beta T cell. An alpha-beta T cell is a T cell that expresses an alpha-beta T cell receptor complex." [CL:0000789, GOC:ai] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "alpha-beta T cell development" RELATED [GOC:add] synonym: "alpha-beta T lymphocyte differentiation" EXACT [] synonym: "alpha-beta T-cell differentiation" EXACT [] synonym: "alpha-beta T-lymphocyte differentiation" EXACT [] is_a: GO:0030217 ! T cell differentiation is_a: GO:0046631 ! alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046634 name: regulation of alpha-beta T cell activation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of alpha-beta T cell activation." [GOC:ai] synonym: "regulation of alpha-beta T lymphocyte activation" EXACT [] synonym: "regulation of alpha-beta T-cell activation" EXACT [] synonym: "regulation of alpha-beta T-lymphocyte activation" EXACT [] is_a: GO:0050863 ! regulation of T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046635 name: positive regulation of alpha-beta T cell activation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of alpha-beta T cell activation." [GOC:ai] synonym: "activation of alpha-beta T cell activation" NARROW [] synonym: "positive regulation of alpha-beta T lymphocyte activation" EXACT [] synonym: "positive regulation of alpha-beta T-cell activation" EXACT [] synonym: "positive regulation of alpha-beta T-lymphocyte activation" EXACT [] synonym: "stimulation of alpha-beta T cell activation" NARROW [] synonym: "up regulation of alpha-beta T cell activation" EXACT [] synonym: "up-regulation of alpha-beta T cell activation" EXACT [] synonym: "upregulation of alpha-beta T cell activation" EXACT [] is_a: GO:0046634 ! regulation of alpha-beta T cell activation is_a: GO:0050870 ! positive regulation of T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046637 name: regulation of alpha-beta T cell differentiation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of alpha-beta T cell differentiation." [GOC:ai] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "regulation of alpha-beta T cell development" RELATED [GOC:add] synonym: "regulation of alpha-beta T lymphocyte differentiation" EXACT [] synonym: "regulation of alpha-beta T-cell differentiation" EXACT [] synonym: "regulation of alpha-beta T-lymphocyte differentiation" EXACT [] is_a: GO:0045580 ! regulation of T cell differentiation is_a: GO:0046634 ! regulation of alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046638 name: positive regulation of alpha-beta T cell differentiation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of alpha-beta T cell differentiation." [GOC:ai] comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. synonym: "activation of alpha-beta T cell differentiation" NARROW [] synonym: "positive regulation of alpha-beta T cell development" RELATED [GOC:add] synonym: "positive regulation of alpha-beta T lymphocyte differentiation" EXACT [] synonym: "positive regulation of alpha-beta T-cell differentiation" EXACT [] synonym: "positive regulation of alpha-beta T-lymphocyte differentiation" EXACT [] synonym: "stimulation of alpha-beta T cell differentiation" NARROW [] synonym: "up regulation of alpha-beta T cell differentiation" EXACT [] synonym: "up-regulation of alpha-beta T cell differentiation" EXACT [] synonym: "upregulation of alpha-beta T cell differentiation" EXACT [] is_a: GO:0045582 ! positive regulation of T cell differentiation is_a: GO:0046635 ! positive regulation of alpha-beta T cell activation is_a: GO:0046637 ! regulation of alpha-beta T cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046649 name: lymphocyte activation namespace: biological_process def: "A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735140] is_a: GO:0045321 ! leukocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046651 name: lymphocyte proliferation namespace: biological_process def: "The expansion of a lymphocyte population by cell division." [GOC:ai] is_a: GO:0032943 ! mononuclear cell proliferation is_a: GO:0046649 ! lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046692 name: sperm competition namespace: biological_process def: "Any process that contributes to the success of sperm fertilization in multiply-mated females." [PMID:10885514] xref: Wikipedia:Sperm_competition is_a: GO:0048609 ! multicellular organismal reproductive process relationship: part_of GO:0007320 ! insemination property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046717 name: acid secretion namespace: biological_process def: "The controlled release of acid by a cell or group of cells." [GOC:ai] is_a: GO:0046903 ! secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046849 name: bone remodeling namespace: biological_process def: "The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis." [GOC:curators] synonym: "bone remodelling" EXACT [] xref: Wikipedia:Bone_remodeling is_a: GO:0048771 ! tissue remodeling property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046879 name: hormone secretion namespace: biological_process def: "The regulated release of hormones, substances with a specific regulatory effect on a particular organ or group of cells." [ISBN:0198506732] is_a: GO:0009914 ! hormone transport is_a: GO:0023061 ! signal release is_a: GO:0032940 ! secretion by cell property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046883 name: regulation of hormone secretion namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the regulated release of a hormone from a cell or group of cells." [GOC:ai] is_a: GO:0010646 ! regulation of cell communication is_a: GO:0023051 ! regulation of signaling is_a: GO:0051046 ! regulation of secretion is_a: GO:0060341 ! regulation of cellular localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046903 name: secretion namespace: biological_process def: "The controlled release of a substance by a cell, a group of cells, or a tissue." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048002 name: antigen processing and presentation of peptide antigen namespace: biological_process def: "The process in which an antigen-presenting cell expresses peptide antigen in association with an MHC protein complex on its cell surface, including proteolysis and transport steps for the peptide antigen both prior to and following assembly with the MHC protein complex. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein." [GOC:add, ISBN:0781735149, PMID:15771591] synonym: "antigen presentation, peptide antigen" EXACT [] synonym: "peptide antigen processing and presentation" EXACT [] is_a: GO:0019882 ! antigen processing and presentation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048103 name: somatic stem cell division namespace: biological_process def: "The self-renewing division of a somatic stem cell, a stem cell that can give rise to cell types of the body other than those of the germ-line." [GOC:jid, ISBN:0582227089] synonym: "somatic stem cell renewal" EXACT [] is_a: GO:0017145 ! stem cell division property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048134 name: germ-line cyst formation namespace: biological_process def: "Formation of a cluster of germ-line cells derived from a single founder cell." [GOC:jid, PMID:10370240] is_a: GO:0008283 ! cell proliferation is_a: GO:0048610 ! cellular process involved in reproduction relationship: part_of GO:0007281 ! germ cell development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048136 name: male germ-line cyst formation namespace: biological_process def: "Formation of a cluster of germ-line cells, in the male gonad of an insect, derived from a single founder cell (cystoblast)." [GOC:jid] is_a: GO:0048134 ! germ-line cyst formation relationship: part_of GO:0007283 ! spermatogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048137 name: spermatocyte division namespace: biological_process def: "The meiotic divisions undergone by the primary and secondary spermatocytes to produce a cyst of haploid spermatids." [GOC:jid, ISBN:0879694238] synonym: "spermatocyte cell division" EXACT [] is_a: GO:0048610 ! cellular process involved in reproduction is_a: GO:0051301 ! cell division relationship: part_of GO:0048136 ! male germ-line cyst formation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048232 name: male gamete generation namespace: biological_process def: "Generation of the male gamete; specialised haploid cells produced by meiosis and along with a female gamete takes part in sexual reproduction." [GOC:dph, GOC:jid] is_a: GO:0007276 ! gamete generation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048240 name: sperm capacitation namespace: biological_process def: "A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium." [GOC:jid, PMID:11820818] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048469 ! cell maturation is_a: GO:0048610 ! cellular process involved in reproduction relationship: part_of GO:0007286 ! spermatid development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048243 name: norepinephrine secretion namespace: biological_process def: "The regulated release of norepinephrine by a cell or group of cells. Norepinephrine is a catecholamine and it acts as a hormone and as a neurotransmitter of most of the sympathetic nervous system." [GOC:ef, GOC:jid] synonym: "noradrenaline secretion" EXACT [] is_a: GO:0015874 ! norepinephrine transport is_a: GO:0050432 ! catecholamine secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048285 name: organelle fission namespace: biological_process def: "The creation of two or more organelles by division of one organelle." [GOC:jid] subset: goslim_pir ! PIR GO slim subset: goslim_yeast ! Yeast GO slim is_a: GO:0006996 ! organelle organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048289 name: isotype switching to IgE isotypes namespace: biological_process def: "The switching of activated B cells from IgM biosynthesis to IgE biosynthesis, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and IgE constant region gene segments in the immunoglobulin heavy chain locus." [ISBN:0781735149, PMID:12370374, PMID:2113175, PMID:9186655] synonym: "class switch recombination to IgE isotypes" EXACT [] synonym: "class switching to IgE isotypes" EXACT [] synonym: "isotype switch recombination to IgE isotypes" EXACT [] is_a: GO:0045190 ! isotype switching property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048293 name: regulation of isotype switching to IgE isotypes namespace: biological_process def: "Any process that modulates the frequency, rate or extent of isotype switching to IgE isotypes." [GOC:jid] synonym: "regulation of class switch recombination to IgE isotypes" EXACT [] synonym: "regulation of class switching to IgE isotypes" EXACT [] synonym: "regulation of isotype switch recombination to IgE isotypes" EXACT [] is_a: GO:0045191 ! regulation of isotype switching property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048295 name: positive regulation of isotype switching to IgE isotypes namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of isotype switching to IgE isotypes." [GOC:jid] synonym: "activation of isotype switching to IgE isotypes" NARROW [] synonym: "positive regulation of class switch recombination to IgE isotypes" EXACT [] synonym: "positive regulation of class switching to IgE isotypes" EXACT [] synonym: "positive regulation of isotype switch recombination to IgE isotypes" EXACT [] synonym: "stimulation of isotype switching to IgE isotypes" NARROW [] synonym: "up regulation of isotype switching to IgE isotypes" EXACT [] synonym: "up-regulation of isotype switching to IgE isotypes" EXACT [] synonym: "upregulation of isotype switching to IgE isotypes" EXACT [] is_a: GO:0045830 ! positive regulation of isotype switching is_a: GO:0048293 ! regulation of isotype switching to IgE isotypes property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048305 name: immunoglobulin secretion namespace: biological_process def: "The regulated release of immunoglobulins from a B cell or plasma cell, whose mechanism includes the use of alternate polyadenylylation signals to favor the biosynthesis of secreted forms of immunoglobulin over membrane-bound immunoglobulin." [GOC:add, ISBN:0781735149, PMID:9185563] synonym: "antibody secretion" EXACT [] is_a: GO:0009306 ! protein secretion relationship: part_of GO:0002377 ! immunoglobulin production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048468 name: cell development namespace: biological_process def: "The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate." [GOC:go_curators] subset: goslim_candida ! Candida GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "terminal differentiation" RELATED [GOC:dph, GOC:tb] is_a: GO:0048856 ! anatomical structure development is_a: GO:0048869 ! cellular developmental process relationship: part_of GO:0030154 ! cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048469 name: cell maturation namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state." [GOC:go_curators] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "functional differentiation" RELATED [GOC:dph] is_a: GO:0021700 ! developmental maturation is_a: GO:0048869 ! cellular developmental process relationship: part_of GO:0048468 ! cell development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048477 name: oogenesis namespace: biological_process alt_id: GO:0009993 alt_id: GO:0048157 def: "The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell. Examples of this process are found in Mus musculus and Drosophila melanogaster." [GOC:kmv, GOC:mtg_sensu] synonym: "ovum development" EXACT systematic_synonym [] xref: Wikipedia:Oogenesis is_a: GO:0007292 ! female gamete generation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048511 name: rhythmic process namespace: biological_process def: "Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism." [GOC:jid] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "rhythm" RELATED [] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048512 name: circadian behavior namespace: biological_process def: "The specific actions or reactions of an organism that recur with a regularity of approximately 24 hours." [GOC:bf, GOC:go_curators] synonym: "circadian rhythm behavior" EXACT [] is_a: GO:0007622 ! rhythmic behavior is_a: GO:0007623 ! circadian rhythm property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048513 name: organ development namespace: biological_process def: "Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions." [GOC:dph, GOC:jid] synonym: "development of an organ" EXACT [] synonym: "organogenesis" EXACT [] xref: Wikipedia:Organogenesis is_a: GO:0048856 ! anatomical structure development relationship: part_of GO:0048731 ! system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048514 name: blood vessel morphogenesis namespace: biological_process def: "The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood." [GOC:jid] is_a: GO:0009653 ! anatomical structure morphogenesis relationship: part_of GO:0001568 ! blood vessel development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048515 name: spermatid differentiation namespace: biological_process def: "The process whose specific outcome is the progression of a spermatid over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dph, GOC:jid] synonym: "spermatid cell differentiation" EXACT [] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0030154 ! cell differentiation is_a: GO:0048610 ! cellular process involved in reproduction relationship: part_of GO:0007283 ! spermatogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048518 name: positive regulation of biological process namespace: biological_process alt_id: GO:0043119 def: "Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of biological process" NARROW [] synonym: "positive regulation of physiological process" EXACT [] synonym: "stimulation of biological process" NARROW [] synonym: "up regulation of biological process" EXACT [] synonym: "up-regulation of biological process" EXACT [] synonym: "upregulation of biological process" EXACT [] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048519 name: negative regulation of biological process namespace: biological_process alt_id: GO:0043118 def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] subset: gosubset_prok ! Prokaryotic GO subset synonym: "down regulation of biological process" EXACT [] synonym: "down-regulation of biological process" EXACT [] synonym: "downregulation of biological process" EXACT [] synonym: "inhibition of biological process" NARROW [] synonym: "negative regulation of physiological process" EXACT [] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048520 name: positive regulation of behavior namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of behavior, the specific actions or reactions of an organism in response to external or internal stimuli." [GOC:jid] synonym: "activation of behavior" NARROW [] synonym: "stimulation of behavior" NARROW [] synonym: "up regulation of behavior" EXACT [] synonym: "up-regulation of behavior" EXACT [] synonym: "upregulation of behavior" EXACT [] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:0050795 ! regulation of behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048522 name: positive regulation of cellular process namespace: biological_process alt_id: GO:0051242 def: "Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of cellular process" NARROW [] synonym: "positive regulation of cellular physiological process" EXACT [] synonym: "stimulation of cellular process" NARROW [] synonym: "up regulation of cellular process" EXACT [] synonym: "up-regulation of cellular process" EXACT [] synonym: "upregulation of cellular process" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048534 name: hemopoietic or lymphoid organ development namespace: biological_process def: "The process whose specific outcome is the progression of any organ involved in hemopoiesis or lymphoid cell activation over time, from its formation to the mature structure. Such development includes differentiation of resident cell types (stromal cells) and of migratory cell types dependent on the unique microenvironment afforded by the organ for their proper differentiation." [GOC:add, ISBN:0781735149] synonym: "haematopoietic or lymphoid organ development" EXACT [] synonym: "haemopoietic or lymphoid organ development" EXACT [] synonym: "hematopoietic or lymphoid organ development" EXACT [] is_a: GO:0048513 ! organ development relationship: part_of GO:0002520 ! immune system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048583 name: regulation of response to stimulus namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048584 name: positive regulation of response to stimulus namespace: biological_process def: "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "activation of response to stimulus" NARROW [] synonym: "stimulation of response to stimulus" NARROW [] synonym: "up regulation of response to stimulus" EXACT [] synonym: "up-regulation of response to stimulus" EXACT [] synonym: "upregulation of response to stimulus" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0048583 ! regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048585 name: negative regulation of response to stimulus namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "down regulation of response to stimulus" EXACT [] synonym: "down-regulation of response to stimulus" EXACT [] synonym: "downregulation of response to stimulus" EXACT [] synonym: "inhibition of response to stimulus" NARROW [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0048583 ! regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048598 name: embryonic morphogenesis namespace: biological_process alt_id: GO:0048828 def: "The process in which anatomical structures are generated and organized during the embryonic phase. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants." [GOC:jid, GOC:mtg_sensu] is_a: GO:0009653 ! anatomical structure morphogenesis relationship: part_of GO:0009790 ! embryo development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048609 name: multicellular organismal reproductive process namespace: biological_process def: "The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs." [GOC:dph, GOC:jid, GOC:tb] synonym: "organismal reproductive process" BROAD [GOC:curators] synonym: "reproductive process in a multicellular organism" EXACT [GOC:curators] is_a: GO:0022414 ! reproductive process is_a: GO:0032501 ! multicellular organismal process relationship: part_of GO:0032504 ! multicellular organism reproduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048610 name: cellular process involved in reproduction namespace: biological_process def: "A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism." [GOC:dph, GOC:jid] subset: gosubset_prok ! Prokaryotic GO subset synonym: "reproductive cellular process" RELATED [GOC:dph, GOC:tb] is_a: GO:0009987 ! cellular process is_a: GO:0022414 ! reproductive process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048646 name: anatomical structure formation involved in morphogenesis namespace: biological_process def: "The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." [GOC:dph, GOC:jid, GOC:tb] comment: Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense. subset: goslim_generic ! Generic GO slim synonym: "formation of an anatomical structure involved in morphogenesis" EXACT [GOC:dph, GOC:tb] is_a: GO:0032502 ! developmental process relationship: part_of GO:0009653 ! anatomical structure morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048699 name: generation of neurons namespace: biological_process def: "The process in which nerve cells are generated. This includes the production of neuroblasts and their differentiation into neurons." [GOC:nln] synonym: "neuron generation" EXACT [GOC:curators] is_a: GO:0022008 ! neurogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048705 name: skeletal system morphogenesis namespace: biological_process def: "The process in which the anatomical structures of the skeleton are generated and organized." [GOC:dph, GOC:dsf, GOC:jid, GOC:tb] synonym: "skeletal morphogenesis" EXACT [GOC:dph, GOC:tb] is_a: GO:0009887 ! organ morphogenesis relationship: part_of GO:0001501 ! skeletal system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048729 name: tissue morphogenesis namespace: biological_process def: "The process in which the anatomical structures of a tissue are generated and organized." [GOC:dph, GOC:jid] is_a: GO:0009653 ! anatomical structure morphogenesis relationship: part_of GO:0009888 ! tissue development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048731 name: system development namespace: biological_process def: "The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process." [GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development relationship: part_of GO:0007275 ! multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048738 name: cardiac muscle tissue development namespace: biological_process def: "The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure." [GOC:dph, GOC:jid, GOC:lm] synonym: "heart muscle development" EXACT [] is_a: GO:0014706 ! striated muscle tissue development relationship: part_of GO:0007507 ! heart development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048754 name: branching morphogenesis of a tube namespace: biological_process def: "The process in which the anatomical structures of branches in a tube are generated and organized. A tube is a long hollow cylinder." [GOC:dgh, GOC:dph, GOC:jid] synonym: "tubulogenesis" RELATED [GOC:dph, GOC:tb] is_a: GO:0001763 ! morphogenesis of a branching structure is_a: GO:0035239 ! tube morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048771 name: tissue remodeling namespace: biological_process def: "The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling." [GOC:ebc] subset: goslim_pir ! PIR GO slim is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048820 name: hair follicle maturation namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a hair follicle to attain its fully functional state." [GOC:devbiol] is_a: GO:0022405 ! hair cycle process is_a: GO:0071695 ! anatomical structure maturation relationship: part_of GO:0001942 ! hair follicle development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048856 name: anatomical structure development namespace: biological_process def: "The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." [GOC:mtg_15jun06, GO_REF:0000021] comment: This term was added by GO_REF:0000021. subset: goslim_generic ! Generic GO slim synonym: "development of an anatomical structure" EXACT [] is_a: GO:0032502 ! developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048869 name: cellular developmental process namespace: biological_process def: "A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition." [GOC:isa_complete] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0009987 ! cellular process is_a: GO:0032502 ! developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048870 name: cell motility namespace: biological_process def: "Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another." [GOC:dgh, GOC:dph, GOC:isa_complete, GOC:mlg] subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell locomotion" EXACT [] synonym: "cell movement" RELATED [] synonym: "movement of a cell" EXACT [] is_a: GO:0006928 ! cellular component movement is_a: GO:0040011 ! locomotion relationship: part_of GO:0051674 ! localization of cell property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048871 name: multicellular organismal homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state at the level of the multicellular organism." [GOC:isa_complete] is_a: GO:0032501 ! multicellular organismal process is_a: GO:0042592 ! homeostatic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048872 name: homeostasis of number of cells namespace: biological_process def: "Any biological process involved in the maintenance of the steady-state number of cells within a population of cells." [GOC:isa_complete] synonym: "cell population homeostasis" EXACT [] synonym: "homeostasis of cell number" EXACT [GOC:dph] is_a: GO:0042592 ! homeostatic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048875 name: chemical homeostasis within a tissue namespace: biological_process def: "Any process involved in the maintenance of the internal steady state of the amount of a chemical at the level of the tissue." [GOC:isa_complete] is_a: GO:0001894 ! tissue homeostasis is_a: GO:0048878 ! chemical homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048878 name: chemical homeostasis namespace: biological_process def: "Any biological process involved in the maintenance of an internal steady state of a chemical." [GOC:isa_complete] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0042592 ! homeostatic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050432 name: catecholamine secretion namespace: biological_process def: "The regulated release of catecholamines by a cell or group of cells. The catecholamines are a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine." [GOC:ai, GOC:ef] is_a: GO:0032940 ! secretion by cell is_a: GO:0051937 ! catecholamine transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050673 name: epithelial cell proliferation namespace: biological_process def: "The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances." [ISBN:0721662544] is_a: GO:0008283 ! cell proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050678 name: regulation of epithelial cell proliferation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of epithelial cell proliferation." [GOC:ai] is_a: GO:0042127 ! regulation of cell proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050679 name: positive regulation of epithelial cell proliferation namespace: biological_process def: "Any process that activates or increases the rate or extent of epithelial cell proliferation." [GOC:ai] synonym: "activation of epithelial cell proliferation" NARROW [] synonym: "stimulation of epithelial cell proliferation" NARROW [] synonym: "up regulation of epithelial cell proliferation" EXACT [] synonym: "up-regulation of epithelial cell proliferation" EXACT [] synonym: "upregulation of epithelial cell proliferation" EXACT [] is_a: GO:0008284 ! positive regulation of cell proliferation is_a: GO:0050678 ! regulation of epithelial cell proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050708 name: regulation of protein secretion namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the controlled release of a protein from a cell or group of cells." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0051046 ! regulation of secretion is_a: GO:0051223 ! regulation of protein transport is_a: GO:0060341 ! regulation of cellular localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050714 name: positive regulation of protein secretion namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the controlled release of a protein from a cell or group of cells." [GOC:ai] synonym: "activation of protein secretion" NARROW [] synonym: "stimulation of protein secretion" NARROW [] synonym: "up regulation of protein secretion" EXACT [] synonym: "up-regulation of protein secretion" EXACT [] synonym: "upregulation of protein secretion" EXACT [] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0051222 ! positive regulation of protein transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050727 name: regulation of inflammatory response namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents." [GOC:ai] is_a: GO:0031347 ! regulation of defense response is_a: GO:0032101 ! regulation of response to external stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050728 name: negative regulation of inflammatory response namespace: biological_process alt_id: GO:0030236 def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response." [GOC:ai] synonym: "anti-inflammatory response" EXACT [] synonym: "down regulation of inflammatory response" EXACT [] synonym: "down-regulation of inflammatory response" EXACT [] synonym: "downregulation of inflammatory response" EXACT [] synonym: "inhibition of inflammatory response" NARROW [] is_a: GO:0031348 ! negative regulation of defense response is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:0050727 ! regulation of inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050729 name: positive regulation of inflammatory response namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the inflammatory response." [GOC:ai] synonym: "activation of inflammatory response" NARROW [] synonym: "stimulation of inflammatory response" NARROW [] synonym: "up regulation of inflammatory response" EXACT [] synonym: "up-regulation of inflammatory response" EXACT [] synonym: "upregulation of inflammatory response" EXACT [] is_a: GO:0031349 ! positive regulation of defense response is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:0050727 ! regulation of inflammatory response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050776 name: regulation of immune response namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus." [GOC:ai] xref: Reactome:REACT_101484 xref: Reactome:REACT_106667 xref: Reactome:REACT_107426 xref: Reactome:REACT_11152 xref: Reactome:REACT_81657 xref: Reactome:REACT_82803 xref: Reactome:REACT_87475 xref: Reactome:REACT_94152 xref: Reactome:REACT_95389 xref: Reactome:REACT_97860 is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048583 ! regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050777 name: negative regulation of immune response namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus." [GOC:ai] synonym: "down regulation of immune response" EXACT [] synonym: "down-regulation of immune response" EXACT [] synonym: "downregulation of immune response" EXACT [] synonym: "inhibition of immune response" NARROW [] is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:0050776 ! regulation of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050778 name: positive regulation of immune response namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus." [GOC:ai] synonym: "stimulation of immune response" NARROW [] synonym: "up regulation of immune response" EXACT [] synonym: "up-regulation of immune response" EXACT [] synonym: "upregulation of immune response" EXACT [] is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:0050776 ! regulation of immune response property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050789 name: regulation of biological process namespace: biological_process alt_id: GO:0050791 def: "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:ai, GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of physiological process" EXACT [] is_a: GO:0065007 ! biological regulation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050793 name: regulation of developmental process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult)." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050794 name: regulation of cellular process namespace: biological_process alt_id: GO:0051244 def: "Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of cellular physiological process" EXACT [] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050795 name: regulation of behavior namespace: biological_process def: "Any process that modulates the frequency, rate or extent of behavior, the specific actions or reactions of an organism in response to external or internal stimuli." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of behaviour" EXACT [] is_a: GO:0048583 ! regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050801 name: ion homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of ions within an organism or cell." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "electrolyte homeostasis" RELATED [] synonym: "negative regulation of crystal biosynthesis" RELATED [] synonym: "negative regulation of crystal formation" RELATED [] is_a: GO:0048878 ! chemical homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050802 name: circadian sleep/wake cycle, sleep namespace: biological_process def: "The part of the circadian sleep/wake cycle where the organism is asleep." [GOC:ai] is_a: GO:0022410 ! circadian sleep/wake cycle process is_a: GO:0030431 ! sleep property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050817 name: coagulation namespace: biological_process def: "The process in which a fluid solution, or part of it, changes into a solid or semisolid mass." [ISBN:0198506732] subset: goslim_pir ! PIR GO slim synonym: "clotting" EXACT [] is_a: GO:0032501 ! multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050863 name: regulation of T cell activation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of T cell activation." [GOC:ai] synonym: "regulation of T lymphocyte activation" EXACT [] synonym: "regulation of T-cell activation" EXACT [] synonym: "regulation of T-lymphocyte activation" EXACT [] is_a: GO:0051249 ! regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050864 name: regulation of B cell activation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of B cell activation." [GOC:ai] synonym: "regulation of B lymphocyte activation" EXACT [] synonym: "regulation of B-cell activation" EXACT [] synonym: "regulation of B-lymphocyte activation" EXACT [] is_a: GO:0051249 ! regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050865 name: regulation of cell activation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell activation, the change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand." [GOC:ai] is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050867 name: positive regulation of cell activation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of activation." [GOC:ai] synonym: "activation of cell activation" NARROW [] synonym: "stimulation of cell activation" NARROW [] synonym: "up regulation of cell activation" EXACT [] synonym: "up-regulation of cell activation" EXACT [] synonym: "upregulation of cell activation" EXACT [] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0050865 ! regulation of cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050870 name: positive regulation of T cell activation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of T cell activation." [GOC:ai] synonym: "activation of T cell activation" NARROW [] synonym: "positive regulation of T lymphocyte activation" EXACT [] synonym: "positive regulation of T-cell activation" EXACT [] synonym: "positive regulation of T-lymphocyte activation" EXACT [] synonym: "stimulation of T cell activation" NARROW [] synonym: "up regulation of T cell activation" EXACT [] synonym: "up-regulation of T cell activation" EXACT [] synonym: "upregulation of T cell activation" EXACT [] is_a: GO:0050863 ! regulation of T cell activation is_a: GO:0051251 ! positive regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050871 name: positive regulation of B cell activation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of B cell activation." [GOC:ai] synonym: "activation of B cell activation" NARROW [] synonym: "positive regulation of B lymphocyte activation" EXACT [] synonym: "positive regulation of B-cell activation" EXACT [] synonym: "positive regulation of B-lymphocyte activation" EXACT [] synonym: "stimulation of B cell activation" NARROW [] synonym: "up regulation of B cell activation" EXACT [] synonym: "up-regulation of B cell activation" EXACT [] synonym: "upregulation of B cell activation" EXACT [] is_a: GO:0050864 ! regulation of B cell activation is_a: GO:0051251 ! positive regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050877 name: neurological system process namespace: biological_process def: "A organ system process carried out by any of the organs or tissues of neurological system." [GOC:ai, GOC:mtg_cardio] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim synonym: "neurophysiological process" EXACT [] synonym: "pan-neural process" RELATED [] is_a: GO:0003008 ! system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050878 name: regulation of body fluid levels namespace: biological_process def: "Any process that modulates the levels of body fluids." [GOC:ai, GOC:dph, GOC:tb] subset: goslim_pir ! PIR GO slim is_a: GO:0032501 ! multicellular organismal process is_a: GO:0065008 ! regulation of biological quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050884 name: neuromuscular process controlling posture namespace: biological_process def: "Any process in which an organism voluntarily modulates its posture, the alignment of its anatomical parts." [GOC:dph, GOC:tb] synonym: "regulation of posture" EXACT [] is_a: GO:0050905 ! neuromuscular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050885 name: neuromuscular process controlling balance namespace: biological_process def: "Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors." [GOC:ai, GOC:dph, http://www.onelook.com/] synonym: "regulation of balance" RELATED [] is_a: GO:0050905 ! neuromuscular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050886 name: endocrine process namespace: biological_process def: "The process that involves the secretion of or response to endocrine hormones. An endocrine hormone is a hormone released into the circulatory system." [ISBN:0721662544] subset: goslim_pir ! PIR GO slim synonym: "endocrine physiological process" EXACT [] synonym: "endocrine physiology" EXACT [] is_a: GO:0003008 ! system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050890 name: cognition namespace: biological_process def: "The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory." [ISBN:0721619908, http://www.onelook.com/] xref: Wikipedia:Cognition is_a: GO:0050877 ! neurological system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050891 name: multicellular organismal water homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of water within a tissue, organ, or a multicellular organism." [GOC:dph, GOC:tb] synonym: "body fluid osmoregulation" RELATED [GOC:dph, GOC:tb] is_a: GO:0030104 ! water homeostasis is_a: GO:0050878 ! regulation of body fluid levels property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050896 name: response to stimulus namespace: biological_process alt_id: GO:0051869 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation synonym: "physiological response to stimulus" EXACT [] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050900 name: leukocyte migration namespace: biological_process def: "The movement of a leukocyte within or between different tissues and organs of the body." [GOC:add, ISBN:0781735149, PMID:14680625, PMID:14708592, PMID:7507411, PMID:8600538] synonym: "immune cell migration" EXACT [] synonym: "immune cell trafficking" EXACT [] synonym: "leucocyte migration" EXACT [] synonym: "leucocyte trafficking" EXACT [] synonym: "leukocyte trafficking" EXACT [] xref: Reactome:REACT_100059 xref: Reactome:REACT_12051 xref: Reactome:REACT_28425 xref: Reactome:REACT_34071 xref: Reactome:REACT_77198 xref: Reactome:REACT_83057 xref: Reactome:REACT_86476 xref: Reactome:REACT_86886 xref: Reactome:REACT_89386 xref: Reactome:REACT_93252 xref: Reactome:REACT_98799 is_a: GO:0002376 ! immune system process is_a: GO:0016477 ! cell migration property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050905 name: neuromuscular process namespace: biological_process def: "Any process pertaining to the functions of the nervous and muscular systems of an organism." [GOC:ai] synonym: "neuromotor process" EXACT [] synonym: "neuromuscular physiological process" EXACT [] is_a: GO:0050877 ! neurological system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050906 name: detection of stimulus involved in sensory perception namespace: biological_process def: "The series of events involved in sensory perception in which a sensory stimulus is received by a cell and converted into a molecular signal." [GOC:ai, GOC:dph] synonym: "sensory detection of stimulus" EXACT [] synonym: "sensory perception, sensory transduction of stimulus" EXACT [] synonym: "sensory perception, stimulus detection" EXACT [] synonym: "sensory transduction" EXACT [] xref: Wikipedia:Transduction_(physiology) is_a: GO:0051606 ! detection of stimulus relationship: part_of GO:0007600 ! sensory perception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050907 name: detection of chemical stimulus involved in sensory perception namespace: biological_process def: "The series of events in which a sensory chemical stimulus is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "sensory detection of chemical stimulus" EXACT [] synonym: "sensory detection of chemical stimulus during sensory perception" EXACT [] synonym: "sensory perception, sensory detection of chemical stimulus" EXACT [] synonym: "sensory perception, sensory transduction of chemical stimulus" EXACT [] synonym: "sensory transduction of chemical stimulus" EXACT [] synonym: "sensory transduction of chemical stimulus during sensory perception" EXACT [] is_a: GO:0009593 ! detection of chemical stimulus is_a: GO:0050906 ! detection of stimulus involved in sensory perception relationship: part_of GO:0007606 ! sensory perception of chemical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050908 name: detection of light stimulus involved in visual perception namespace: biological_process def: "The series of events involved in visual perception in which a sensory light stimulus is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "sensory detection of light during visual perception" EXACT [] synonym: "sensory detection of light stimulus during visual perception" EXACT [] synonym: "sensory transduction of light during visual perception" EXACT [] synonym: "sensory transduction of light stimulus during visual perception" EXACT [] synonym: "visual perception, detection of light stimulus" EXACT [] synonym: "visual perception, sensory transduction during perception of light" EXACT [] synonym: "visual perception, sensory transduction of light stimulus" EXACT [] is_a: GO:0009584 ! detection of visible light is_a: GO:0050962 ! detection of light stimulus involved in sensory perception relationship: part_of GO:0007601 ! visual perception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050909 name: sensory perception of taste namespace: biological_process def: "The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process." [GOC:ai, http://www.onelook.com/] synonym: "gustation" EXACT [] synonym: "sense of taste" EXACT [] synonym: "taste" EXACT [] synonym: "taste perception" EXACT [] xref: Wikipedia:Taste is_a: GO:0007606 ! sensory perception of chemical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050910 name: detection of mechanical stimulus involved in sensory perception of sound namespace: biological_process alt_id: GO:0009592 alt_id: GO:0055128 def: "The series of events involved in the perception of sound vibration. The vibration is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "detection of sound" EXACT [] synonym: "hearing, sensory transduction of sound" EXACT [] synonym: "perception of sound, detection of mechanical stimulus" EXACT [] synonym: "perception of sound, sensory detection of mechanical stimulus" EXACT [] synonym: "perception of sound, sensory transduction of mechanical stimulus" EXACT [] synonym: "sensory detection of mechanical stimulus during perception of sound" EXACT [] synonym: "sensory transduction of mechanical stimulus during perception of sound" EXACT [] synonym: "sensory transduction of sound" EXACT [] is_a: GO:0050877 ! neurological system process is_a: GO:0050974 ! detection of mechanical stimulus involved in sensory perception relationship: part_of GO:0007605 ! sensory perception of sound property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050912 name: detection of chemical stimulus involved in sensory perception of taste namespace: biological_process def: "The series of events involved in the perception of taste in which a gustatory chemical stimulus is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "perception of taste, detection of chemical stimulus" EXACT [] synonym: "perception of taste, sensory detection of chemical stimulus" EXACT [] synonym: "perception of taste, sensory transduction of chemical stimulus" EXACT [] synonym: "sensory detection of chemical stimulus during perception of taste" EXACT [] synonym: "sensory detection of taste" EXACT [] synonym: "sensory transduction of chemical stimulus during perception of taste" EXACT [] synonym: "sensory transduction of taste" EXACT [] synonym: "taste perception" BROAD [] is_a: GO:0050907 ! detection of chemical stimulus involved in sensory perception relationship: part_of GO:0050909 ! sensory perception of taste property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050920 name: regulation of chemotaxis namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0040012 ! regulation of locomotion is_a: GO:0050795 ! regulation of behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050921 name: positive regulation of chemotaxis namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of chemotaxis" NARROW [] synonym: "stimulation of chemotaxis" NARROW [] synonym: "up regulation of chemotaxis" EXACT [] synonym: "up-regulation of chemotaxis" EXACT [] synonym: "upregulation of chemotaxis" EXACT [] is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:0040017 ! positive regulation of locomotion is_a: GO:0048520 ! positive regulation of behavior is_a: GO:0050920 ! regulation of chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050952 name: sensory perception of electrical stimulus namespace: biological_process def: "The series of events required for an organism to receive a sensory electrical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." [GOC:ai] is_a: GO:0007600 ! sensory perception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050953 name: sensory perception of light stimulus namespace: biological_process def: "The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." [GOC:ai] is_a: GO:0007600 ! sensory perception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050954 name: sensory perception of mechanical stimulus namespace: biological_process def: "The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." [GOC:ai] synonym: "chemi-mechanical coupling" RELATED [] synonym: "mechanosensory perception" EXACT [] synonym: "perception of mechanical stimulus" EXACT [] is_a: GO:0007600 ! sensory perception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050956 name: electroception namespace: biological_process def: "The series of events required for an organism to receive an electrical stimulus, convert it to a molecular signal, and recognize and characterize the signal. Many fish possess an electroception sense; for example, the electric eel uses low voltage pulses of electricity for navigation and prey location." [GOC:ai, PMID:10210663, Wikipedia:Electroreception] synonym: "electroception sense" EXACT [] synonym: "electroceptive sense" EXACT [] xref: Wikipedia:Electroreception is_a: GO:0050952 ! sensory perception of electrical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050957 name: equilibrioception namespace: biological_process def: "The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion." [http://www.medterms.com, http://www.onelook.com/] synonym: "sensory perception of orientation with respect to gravity" EXACT [] xref: Wikipedia:Equilibrioception is_a: GO:0007600 ! sensory perception relationship: part_of GO:0050885 ! neuromuscular process controlling balance property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050959 name: echolocation namespace: biological_process def: "Echolocation is the method used by some animals (e.g. bats, dolphins and some whales) to determine the location of something by measuring the time it takes for an echo to return from it. These animals emit sound waves and listen for the echo, calculating the distance to the object from the time lapse between sound emission and the echo returning." [PMID:16005275, Wikipedia:Animal_echolocation, http://www.onelook.com/] synonym: "perception of environment using reflected sound waves" EXACT [] xref: Wikipedia:Echolocation is_a: GO:0050877 ! neurological system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050962 name: detection of light stimulus involved in sensory perception namespace: biological_process def: "The series of events in which a sensory light stimulus is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "sensory detection of light stimulus" EXACT [] synonym: "sensory detection of light stimulus during sensory perception" EXACT [] synonym: "sensory perception, sensory detection of light stimulus" EXACT [] synonym: "sensory perception, sensory transduction of light stimulus" EXACT [] synonym: "sensory transduction of light stimulus" EXACT [] synonym: "sensory transduction of light stimulus during sensory perception" EXACT [] is_a: GO:0009583 ! detection of light stimulus is_a: GO:0050906 ! detection of stimulus involved in sensory perception relationship: part_of GO:0050953 ! sensory perception of light stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050963 name: detection of electrical stimulus involved in sensory perception namespace: biological_process def: "The series of events in which a sensory electrical stimulus is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "sensory detection of electrical stimulus" EXACT [] synonym: "sensory detection of electrical stimulus during sensory perception" EXACT [] synonym: "sensory perception, sensory detection of electrical stimulus" EXACT [] synonym: "sensory perception, sensory transduction of electrical stimulus" EXACT [] synonym: "sensory transduction of electrical stimulus" EXACT [] synonym: "sensory transduction of electrical stimulus during sensory perception" EXACT [] is_a: GO:0050906 ! detection of stimulus involved in sensory perception is_a: GO:0050981 ! detection of electrical stimulus relationship: part_of GO:0050952 ! sensory perception of electrical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050964 name: detection of electrical stimulus involved in electroception namespace: biological_process def: "The series of events that contribute to electroception in which a sensory electrical stimulus is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "detection of electrical stimulus during electroreception" RELATED [GOC:dph, GOC:tb] synonym: "electroception, detection of electrical stimulus" EXACT [] synonym: "electroception, sensory detection of electrical stimulus" EXACT [] synonym: "electroception, sensory transduction" EXACT [] synonym: "electroception, sensory transduction of electrical stimulus" EXACT [] synonym: "sensory detection of electrical stimulus during electroception" RELATED [] synonym: "sensory transduction of electrical stimulus during electroception" RELATED [] is_a: GO:0050963 ! detection of electrical stimulus involved in sensory perception relationship: part_of GO:0050956 ! electroception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050973 name: detection of mechanical stimulus involved in equilibrioception namespace: biological_process def: "The series of events involved in equilibrioception in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. During equilibrioception, mechanical stimuli may be in the form of input from pressure receptors or from the labyrinth system of the inner ears." [GOC:ai] synonym: "equilibrioception, detection of mechanical stimulus" EXACT [] synonym: "equilibrioception, sensory detection of mechanical stimulus" EXACT [] synonym: "equilibrioception, sensory transduction of mechanical stimulus" EXACT [] synonym: "sensory detection of mechanical stimulus during equilibrioception" EXACT [] synonym: "sensory transduction of mechanical stimulus during equilibrioception" EXACT [] is_a: GO:0050974 ! detection of mechanical stimulus involved in sensory perception relationship: part_of GO:0050957 ! equilibrioception property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050974 name: detection of mechanical stimulus involved in sensory perception namespace: biological_process def: "The series of events in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal." [GOC:ai] synonym: "sensory detection of mechanical stimulus" EXACT [] synonym: "sensory detection of mechanical stimulus during sensory perception" EXACT [] synonym: "sensory perception, sensory detection of mechanical stimulus" EXACT [] synonym: "sensory perception, sensory transduction of mechanical stimulus" EXACT [] synonym: "sensory transduction of mechanical stimulus" EXACT [] synonym: "sensory transduction of mechanical stimulus during sensory perception" EXACT [] is_a: GO:0050906 ! detection of stimulus involved in sensory perception is_a: GO:0050982 ! detection of mechanical stimulus relationship: part_of GO:0050954 ! sensory perception of mechanical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050981 name: detection of electrical stimulus namespace: biological_process def: "The series of events by which an electrical stimulus is received by a cell and converted into a molecular signal." [GOC:ai] is_a: GO:0009582 ! detection of abiotic stimulus is_a: GO:0051602 ! response to electrical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0050982 name: detection of mechanical stimulus namespace: biological_process def: "The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal." [GOC:ai] is_a: GO:0009581 ! detection of external stimulus is_a: GO:0009582 ! detection of abiotic stimulus is_a: GO:0009612 ! response to mechanical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051023 name: regulation of immunoglobulin secretion namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells." [GOC:ai] synonym: "regulation of antibody secretion" EXACT [] is_a: GO:0002637 ! regulation of immunoglobulin production is_a: GO:0050708 ! regulation of protein secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051024 name: positive regulation of immunoglobulin secretion namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the regulated release of immunoglobulins from a cell or group of cells." [GOC:ai] synonym: "activation of immunoglobulin secretion" NARROW [] synonym: "positive regulation of antibody secretion" EXACT [] synonym: "stimulation of immunoglobulin secretion" NARROW [] synonym: "up regulation of immunoglobulin secretion" EXACT [] synonym: "up-regulation of immunoglobulin secretion" EXACT [] synonym: "upregulation of immunoglobulin secretion" EXACT [] is_a: GO:0050714 ! positive regulation of protein secretion is_a: GO:0051023 ! regulation of immunoglobulin secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051046 name: regulation of secretion namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the controlled release of a substance from a cell or group of cells." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0051049 ! regulation of transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051047 name: positive regulation of secretion namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the controlled release of a substance from a cell or group of cells." [GOC:ai] synonym: "activation of secretion" NARROW [] synonym: "stimulation of secretion" NARROW [] synonym: "up regulation of secretion" EXACT [] synonym: "up-regulation of secretion" EXACT [] synonym: "upregulation of secretion" EXACT [] is_a: GO:0051046 ! regulation of secretion is_a: GO:0051050 ! positive regulation of transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051049 name: regulation of transport namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0032879 ! regulation of localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051050 name: positive regulation of transport namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of transport" NARROW [] synonym: "stimulation of transport" NARROW [] synonym: "up regulation of transport" EXACT [] synonym: "up-regulation of transport" EXACT [] synonym: "upregulation of transport" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0051049 ! regulation of transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051052 name: regulation of DNA metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving DNA." [GOC:ai] subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of DNA metabolism" EXACT [] is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051054 name: positive regulation of DNA metabolic process namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving DNA." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of DNA metabolic process" NARROW [] synonym: "positive regulation of DNA metabolism" EXACT [] synonym: "stimulation of DNA metabolic process" NARROW [] synonym: "up regulation of DNA metabolic process" EXACT [] synonym: "up-regulation of DNA metabolic process" EXACT [] synonym: "upregulation of DNA metabolic process" EXACT [] is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process is_a: GO:0051052 ! regulation of DNA metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051093 name: negative regulation of developmental process namespace: biological_process def: "Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult)." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "down regulation of developmental process" EXACT [] synonym: "down-regulation of developmental process" EXACT [] synonym: "downregulation of developmental process" EXACT [] synonym: "inhibition of developmental process" NARROW [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0050793 ! regulation of developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051094 name: positive regulation of developmental process namespace: biological_process def: "Any process that activates or increases the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult)." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of developmental process" NARROW [] synonym: "stimulation of developmental process" NARROW [] synonym: "up regulation of developmental process" EXACT [] synonym: "up-regulation of developmental process" EXACT [] synonym: "upregulation of developmental process" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0050793 ! regulation of developmental process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051132 name: NK T cell activation namespace: biological_process def: "The change in morphology and behavior of a mature or immature natural killer T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [ISBN:0781735149, PMID:12154375, PMID:9133426] comment: Note that NK T cells are a distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repetoire of variable region gene segments. synonym: "NK T lymphocyte activation" EXACT [] synonym: "NK T-cell activation" EXACT [] synonym: "NK T-lymphocyte activation" EXACT [] synonym: "NKT cell activation" EXACT [] synonym: "NT cell activation" EXACT [] synonym: "natural T cell activation" EXACT [] synonym: "natural killer T cell activation" EXACT [] is_a: GO:0046631 ! alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051146 name: striated muscle cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle." [CL:0000737, GOC:ai] synonym: "voluntary muscle cell differentiation" NARROW [] is_a: GO:0042692 ! muscle cell differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051171 name: regulation of nitrogen compound metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds." [GOC:ai, GOC:tb] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of nitrogen metabolic process" EXACT [GOC:tb] synonym: "regulation of nitrogen metabolism" EXACT [] is_a: GO:0019222 ! regulation of metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051173 name: positive regulation of nitrogen compound metabolic process namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds." [GOC:ai, GOC:tb] synonym: "activation of nitrogen metabolic process" NARROW [] synonym: "positive regulation of nitrogen metabolic process" EXACT [GOC:tb] synonym: "positive regulation of nitrogen metabolism" EXACT [] synonym: "stimulation of nitrogen metabolic process" NARROW [] synonym: "up regulation of nitrogen metabolic process" EXACT [] synonym: "up-regulation of nitrogen metabolic process" EXACT [] synonym: "upregulation of nitrogen metabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0051171 ! regulation of nitrogen compound metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051179 name: localization namespace: biological_process def: "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in a specific location." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "establishment and maintenance of cellular component location" NARROW [] synonym: "establishment and maintenance of localization" EXACT [] synonym: "establishment and maintenance of position" EXACT [] synonym: "establishment and maintenance of substance location" NARROW [] synonym: "establishment and maintenance of substrate location" NARROW [] synonym: "localisation" EXACT [GOC:mah] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051216 name: cartilage development namespace: biological_process def: "The process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate." [http://www.onelook.com] synonym: "cartilage biogenesis" EXACT [] synonym: "cartilage biosynthesis" EXACT [] synonym: "cartilage formation" EXACT [] synonym: "chondrogenesis" EXACT [] xref: Wikipedia:Chondrogenesis is_a: GO:0009888 ! tissue development relationship: part_of GO:0001501 ! skeletal system development relationship: part_of GO:0048513 ! organ development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051222 name: positive regulation of protein transport namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] synonym: "activation of protein transport" NARROW [] synonym: "stimulation of protein transport" NARROW [] synonym: "up regulation of protein transport" EXACT [] synonym: "up-regulation of protein transport" EXACT [] synonym: "upregulation of protein transport" EXACT [] is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051223 ! regulation of protein transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051223 name: regulation of protein transport namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0051049 ! regulation of transport is_a: GO:0070201 ! regulation of establishment of protein localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051234 name: establishment of localization namespace: biological_process def: "The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "establishment of localisation" EXACT [GOC:mah] is_a: GO:0008150 ! biological_process relationship: part_of GO:0051179 ! localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051239 name: regulation of multicellular organismal process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a multicellular organismal process, the processes pertinent to the function of a multicellular organism above the cellular level; includes the integrated processes of tissues and organs." [GOC:ai, GOC:dph, GOC:tb] is_a: GO:0050789 ! regulation of biological process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051249 name: regulation of lymphocyte activation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of lymphocyte activation." [GOC:ai] is_a: GO:0002694 ! regulation of leukocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051251 name: positive regulation of lymphocyte activation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of lymphocyte activation." [GOC:ai] synonym: "activation of lymphocyte activation" NARROW [] synonym: "stimulation of lymphocyte activation" NARROW [] synonym: "up regulation of lymphocyte activation" EXACT [] synonym: "up-regulation of lymphocyte activation" EXACT [] synonym: "upregulation of lymphocyte activation" EXACT [] is_a: GO:0002696 ! positive regulation of leukocyte activation is_a: GO:0051249 ! regulation of lymphocyte activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051270 name: regulation of cellular component movement namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the movement of a cellular component." [GOC:ai, GOC:dph, GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of cell movement" RELATED [] synonym: "regulation of cellular component motion" EXACT [GOC:mah] is_a: GO:0032879 ! regulation of localization is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051272 name: positive regulation of cellular component movement namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the movement of a cellular component." [GOC:ai, GOC:dph, GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "activation of cell motility" NARROW [] synonym: "positive regulation of cell movement" RELATED [] synonym: "positive regulation of cellular component motion" EXACT [GOC:mah] synonym: "stimulation of cell motility" NARROW [] synonym: "up regulation of cell motility" EXACT [] synonym: "up-regulation of cell motility" EXACT [] synonym: "upregulation of cell motility" EXACT [] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051270 ! regulation of cellular component movement property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051276 name: chromosome organization namespace: biological_process alt_id: GO:0007001 alt_id: GO:0051277 def: "A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information." [GOC:ai, GOC:dph, GOC:jl, GOC:mah] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_pombe ! Fission yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "chromosome organisation" EXACT [] synonym: "chromosome organization and biogenesis" RELATED [GOC:mah] synonym: "maintenance of genome integrity" RELATED [] synonym: "nuclear genome maintenance" RELATED [] is_a: GO:0006996 ! organelle organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051301 name: cell division namespace: biological_process def: "The process resulting in the physical partitioning and separation of a cell into daughter cells." [GOC:go_curators] comment: Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis excludes nuclear division; in prokaryotes, there is little difference between cytokinesis and cell division. Note that there is no relationship between this term and 'nuclear division ; GO:0000280' because cell division can take place without nuclear division (as in prokaryotes) and vice versa (as in syncytium formation by mitosis without cytokinesis. subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Wikipedia:Cell_division is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051321 name: meiotic cell cycle namespace: biological_process def: "Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell." [GOC:ai] subset: goslim_yeast ! Yeast GO slim is_a: GO:0007049 ! cell cycle is_a: GO:0048610 ! cellular process involved in reproduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051327 name: M phase of meiotic cell cycle namespace: biological_process def: "M phase occurring as part of the meiotic cell cycle. M phase is the part of the cell cycle during which nuclear division takes place. A meiotic cell cycle is one in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell." [GOC:ai, GOC:dph, GOC:mah] is_a: GO:0000279 ! M phase relationship: part_of GO:0051321 ! meiotic cell cycle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051602 name: response to electrical stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus." [GOC:ai] synonym: "response to electricity" RELATED [] is_a: GO:0009628 ! response to abiotic stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051606 name: detection of stimulus namespace: biological_process def: "The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal." [GOC:add, GOC:ai, GOC:dph, GOC:mah] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "perception of stimulus" RELATED [] synonym: "stimulus detection" EXACT [] synonym: "stimulus sensing" RELATED [] is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051641 name: cellular localization namespace: biological_process def: "A localization process that takes place at the cellular level; as a result of a cellular localization process, a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell." [GOC:ai, GOC:mah] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular localisation" EXACT [GOC:mah] synonym: "establishment and maintenance of cellular localization" EXACT [] synonym: "establishment and maintenance of localization in cell or cell membrane" EXACT [] synonym: "intracellular localization" NARROW [] synonym: "localization within cell" NARROW [] is_a: GO:0009987 ! cellular process is_a: GO:0051179 ! localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051649 name: establishment of localization in cell namespace: biological_process def: "The directed movement of a substance or cellular entity, such as a protein complex or organelle, to a specific location within, or in the membrane of, a cell." [GOC:ai, GOC:dph, GOC:tb] subset: gosubset_prok ! Prokaryotic GO subset synonym: "establishment of cellular localization" RELATED [GOC:dph, GOC:tb] synonym: "establishment of intracellular localization" NARROW [] synonym: "establishment of localisation in cell" EXACT [GOC:mah] synonym: "establishment of localization within cell" NARROW [] synonym: "positioning within cell" NARROW [] is_a: GO:0051234 ! establishment of localization relationship: part_of GO:0051641 ! cellular localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051674 name: localization of cell namespace: biological_process def: "Any process in which a cell is transported to, and/or maintained in, a specific location." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell localization" EXACT [] synonym: "establishment and maintenance of cell localization" EXACT [] synonym: "establishment and maintenance of localization of cell" EXACT [] synonym: "localisation of cell" EXACT [GOC:mah] is_a: GO:0051179 ! localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051704 name: multi-organism process namespace: biological_process alt_id: GO:0051706 def: "Any process in which an organism has an effect on another organism of the same or different species." [GOC:ai] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "interaction between organisms" EXACT [] synonym: "physiological interaction between organisms" EXACT [] synonym: "physiological interaction with other organism" EXACT [] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051707 name: response to other organism namespace: biological_process alt_id: GO:0009613 alt_id: GO:0042828 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0009607 ! response to biotic stimulus is_a: GO:0051704 ! multi-organism process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051716 name: cellular response to stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell." [GOC:bf, GOC:jl] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Annotations to this term will be removed during annotation QC. subset: gosubset_prok ! Prokaryotic GO subset subset: high_level_annotation_qc ! High-level terms not to be used for direct annotation is_a: GO:0009987 ! cellular process is_a: GO:0050896 ! response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051937 name: catecholamine transport namespace: biological_process def: "The directed movement of catecholamines, a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine." [GOC:ai, ISBN:0198506732] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0015844 ! monoamine transport is_a: GO:0015850 ! organic alcohol transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055007 name: cardiac muscle cell differentiation namespace: biological_process def: "The process in which a cardiac muscle precursor cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction." [GOC:devbiol, GOC:mtg_heart] synonym: "cardiomyocyte differentiation" EXACT [] synonym: "heart muscle cell differentiation" RELATED [] is_a: GO:0035051 ! cardiac cell differentiation is_a: GO:0051146 ! striated muscle cell differentiation relationship: part_of GO:0048738 ! cardiac muscle tissue development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055065 name: metal ion homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of metal ions within an organism or cell." [GOC:ai, GOC:jid, GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0055080 ! cation homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055067 name: monovalent inorganic cation homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of monovalent inorganic cations within an organism or cell." [GOC:ai, GOC:jid, GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0055080 ! cation homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055074 name: calcium ion homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of calcium ions within an organism or cell." [GOC:ceb, GOC:jid, GOC:mah] synonym: "regulation of calcium ion concentration" EXACT [] is_a: GO:0055065 ! metal ion homeostasis is_a: GO:0072507 ! divalent inorganic cation homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055078 name: sodium ion homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of sodium ions within an organism or cell." [GOC:ai, GOC:jid, GOC:mah] is_a: GO:0055065 ! metal ion homeostasis is_a: GO:0055067 ! monovalent inorganic cation homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055080 name: cation homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of cations within an organism or cell." [GOC:ceb, GOC:jid, GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0050801 ! ion homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055085 name: transmembrane transport namespace: biological_process def: "The process in which a solute is transported from one side of a membrane to the other." [GOC:dph, GOC:jid] comment: Transmembrane transport requires transport of a solute across a lipid bilayer. Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane and is not traversed. For transport through the nuclear pore, consider instead the term 'nucleocytoplasmic transport ; GO:0006913' and its children. subset: goslim_generic ! Generic GO slim subset: goslim_pombe ! Fission yeast GO slim subset: goslim_yeast ! Yeast GO slim xref: Reactome:REACT_100480 xref: Reactome:REACT_101577 xref: Reactome:REACT_101877 xref: Reactome:REACT_101975 xref: Reactome:REACT_102348 xref: Reactome:REACT_102897 xref: Reactome:REACT_102974 xref: Reactome:REACT_104555 xref: Reactome:REACT_108243 xref: Reactome:REACT_109832 xref: Reactome:REACT_110770 xref: Reactome:REACT_114546 xref: Reactome:REACT_114763 xref: Reactome:REACT_114890 xref: Reactome:REACT_115378 xref: Reactome:REACT_15480 xref: Reactome:REACT_15518 xref: Reactome:REACT_19118 xref: Reactome:REACT_29093 xref: Reactome:REACT_29184 xref: Reactome:REACT_29635 xref: Reactome:REACT_30969 xref: Reactome:REACT_32055 xref: Reactome:REACT_32223 xref: Reactome:REACT_32423 xref: Reactome:REACT_32713 xref: Reactome:REACT_33571 xref: Reactome:REACT_61245 xref: Reactome:REACT_79086 xref: Reactome:REACT_79921 xref: Reactome:REACT_80022 xref: Reactome:REACT_80510 xref: Reactome:REACT_80848 xref: Reactome:REACT_80977 xref: Reactome:REACT_81024 xref: Reactome:REACT_81153 xref: Reactome:REACT_82725 xref: Reactome:REACT_83770 xref: Reactome:REACT_86135 xref: Reactome:REACT_86409 xref: Reactome:REACT_86576 xref: Reactome:REACT_87124 xref: Reactome:REACT_88059 xref: Reactome:REACT_88521 xref: Reactome:REACT_88894 xref: Reactome:REACT_89376 xref: Reactome:REACT_91272 xref: Reactome:REACT_91803 xref: Reactome:REACT_92006 xref: Reactome:REACT_92624 xref: Reactome:REACT_93747 xref: Reactome:REACT_94160 xref: Reactome:REACT_94393 xref: Reactome:REACT_94944 xref: Reactome:REACT_94972 xref: Reactome:REACT_96633 xref: Reactome:REACT_96636 xref: Reactome:REACT_97365 xref: Reactome:REACT_97867 xref: Reactome:REACT_98509 xref: Reactome:REACT_98716 xref: Reactome:REACT_99579 xref: Reactome:REACT_99829 is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0055127 name: vibrational conductance of sound to the inner ear namespace: biological_process def: "The transmission of vibrations via ossicles to the inner ear." [GOC:mh] is_a: GO:0032501 ! multicellular organismal process relationship: part_of GO:0007605 ! sensory perception of sound property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060004 name: reflex namespace: biological_process def: "An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness." [GOC:dph, ISBN:087797099] xref: Wikipedia:Reflex is_a: GO:0009605 ! response to external stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060005 name: vestibular reflex namespace: biological_process def: "A reflex process in which a response to an angular or linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the inner ear and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness." [PMID:11784757] is_a: GO:0060004 ! reflex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060007 name: linear vestibuloocular reflex namespace: biological_process def: "A vestibular reflex by which a response to a linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the otolith and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness." [GOC:dph, PMID:11784757] is_a: GO:0060005 ! vestibular reflex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060047 name: heart contraction namespace: biological_process def: "The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body." [GOC:dph] synonym: "cardiac contraction" RELATED [] synonym: "heart beating" EXACT [] synonym: "hemolymph circulation" RELATED [] is_a: GO:0003015 ! heart process relationship: part_of GO:0008015 ! blood circulation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060048 name: cardiac muscle contraction namespace: biological_process def: "Muscle contraction of cardiac muscle tissue." [GOC:dph] synonym: "heart muscle contraction" EXACT [] is_a: GO:0006941 ! striated muscle contraction relationship: part_of GO:0060047 ! heart contraction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060054 name: positive regulation of epithelial cell proliferation involved in wound healing namespace: biological_process def: "Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury." [GOC:dph] is_a: GO:0050679 ! positive regulation of epithelial cell proliferation relationship: part_of GO:0042060 ! wound healing property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060073 name: micturition namespace: biological_process def: "The regulation of body fluids process in which parasympathetic nerves stimulate the bladder wall muscle to contract and expel urine from the body." [GOC:dph] synonym: "urination" EXACT [] synonym: "urine voiding" EXACT [] xref: Wikipedia:Urination is_a: GO:0003014 ! renal system process is_a: GO:0007588 ! excretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060082 name: eye blink reflex namespace: biological_process def: "The reflex process in which a mechanical stimulus applied to the eye elicits a response of the eyelid closing." [GOC:dph, PMID:2913208] synonym: "nictitating membrane reflex" EXACT [] is_a: GO:0060004 ! reflex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060249 name: anatomical structure homeostasis namespace: biological_process def: "A homeostatic process involved in the maintenance of an internal steady state within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." [GOC:dph] synonym: "anatomical structure maintenance" EXACT [GOC:dph] is_a: GO:0042592 ! homeostatic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060255 name: regulation of macromolecule metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0019222 ! regulation of metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060259 name: regulation of feeding behavior namespace: biological_process def: "Any process that modulates the rate, frequency or extent of the behavior associated with the intake of food." [GOC:BHF, GOC:dph, GOC:tb] synonym: "regulation of feeding behaviour" EXACT [GOC:dph, GOC:tb] is_a: GO:0050795 ! regulation of behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060326 name: cell chemotaxis namespace: biological_process def: "The directed movement of a motile cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis)." [GOC:dph] is_a: GO:0006935 ! chemotaxis is_a: GO:0016477 ! cell migration is_a: GO:0070887 ! cellular response to chemical stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060341 name: regulation of cellular localization namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a process in which a cell, a substance, or a cellular entity is transported to, or maintained in a specific location within or in the membrane of a cell." [GOC:dph, GOC:tb] synonym: "regulation of cellular localisation" EXACT [GOC:mah] is_a: GO:0032879 ! regulation of localization is_a: GO:0050794 ! regulation of cellular process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060348 name: bone development namespace: biological_process def: "The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components." [GOC:dph] is_a: GO:0048856 ! anatomical structure development relationship: part_of GO:0001501 ! skeletal system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060349 name: bone morphogenesis namespace: biological_process def: "The process in which bones are generated and organized." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis relationship: part_of GO:0048705 ! skeletal system morphogenesis relationship: part_of GO:0060348 ! bone development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060350 name: endochondral bone morphogenesis namespace: biological_process def: "The process in which bones are generated and organized as a result of the conversion of initial cartilaginous anlage into bone." [GOC:dph, PMID:11680679] is_a: GO:0060349 ! bone morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060361 name: flight namespace: biological_process def: "Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement." [GOC:dph] is_a: GO:0040011 ! locomotion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060374 name: mast cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation." [GOC:dph, GOC:tb] is_a: GO:0002573 ! myeloid leukocyte differentiation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060429 name: epithelium development namespace: biological_process def: "The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure." [GOC:dph, GOC:mtg_lung] is_a: GO:0009888 ! tissue development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060537 name: muscle tissue development namespace: biological_process def: "The progression of muscle tissue over time, from its initial formation to its mature state. Muscle tissue is a contractile tissue made up of actin and myosin fibers." [GOC:dph] is_a: GO:0009888 ! tissue development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060562 name: epithelial tube morphogenesis namespace: biological_process def: "The process in which the anatomical structures of a tube are generated and organized from an epithelium. Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GOC:dph] is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0035239 ! tube morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060591 name: chondroblast differentiation namespace: biological_process def: "The process in which a mesenchymal cell, acquires specialized structural and/or functional features of a chondroblast. Differentiation includes the processes involved in commitment of a cell to a chondroblast fate. A chondroblast is a precursor cell to chondrocytes." [GOC:dph] synonym: "chondrocyte progenitor cell differentiation" RELATED [GOC:dph] is_a: GO:0030154 ! cell differentiation relationship: part_of GO:0051216 ! cartilage development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060986 name: endocrine hormone secretion namespace: biological_process def: "The regulated release of a hormone into the circulatory system." [GOC:dph] is_a: GO:0046879 ! hormone secretion relationship: part_of GO:0050886 ! endocrine process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0061024 name: membrane organization namespace: biological_process def: "A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." [GOC:dph, GOC:tb] subset: goslim_generic ! Generic GO slim is_a: GO:0016043 ! cellular component organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0061035 name: regulation of cartilage development namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate." [GOC:dph] is_a: GO:2000026 ! regulation of multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0061037 name: negative regulation of cartilage development namespace: biological_process def: "Any process that decreases the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate." [GOC:dph] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0061035 ! regulation of cartilage development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0061061 name: muscle structure development namespace: biological_process def: "The progression of a muscle structure over time, from its formation to its mature state. Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms." [GOC:dph] is_a: GO:0048856 ! anatomical structure development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0065007 name: biological regulation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of any biological process, quality or function." [GOC:isa_complete] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation" BROAD [] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0065008 name: regulation of biological quality namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc." [GOC:isa_complete] subset: gosubset_prok ! Prokaryotic GO subset synonym: "regulation of biological attribute" EXACT [] synonym: "regulation of biological characteristic" EXACT [] is_a: GO:0065007 ! biological regulation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070091 name: glucagon secretion namespace: biological_process def: "The regulated release of glucagon from secretory granules in the A (alpha) cells of the pancreas (islets of Langerhans)." [GOC:BHF, GOC:rl] is_a: GO:0030072 ! peptide hormone secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070201 name: regulation of establishment of protein localization namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of a protein to a specific location." [GOC:BHF, GOC:mah] synonym: "regulation of establishment of protein localisation" EXACT [GOC:mah] is_a: GO:0032880 ! regulation of protein localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070227 name: lymphocyte apoptosis namespace: biological_process def: "The process of apoptosis in a lymphocyte." [GOC:add, ISBN:0781765196] comment: Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). is_a: GO:0071887 ! leukocyte apoptosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070228 name: regulation of lymphocyte apoptosis namespace: biological_process def: "Any process that modulates the occurrence or rate of lymphocyte death by apoptosis." [GOC:add, ISBN:0781765196] comment: Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). is_a: GO:2000106 ! regulation of leukocyte apoptosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070253 name: somatostatin secretion namespace: biological_process def: "The regulated release of somatostatin from secretory granules in the D cells of the pancreas." [GOC:mah] is_a: GO:0030072 ! peptide hormone secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070254 name: mucus secretion namespace: biological_process def: "The regulated release of mucus by the mucosa. Mucus is a viscous slimy secretion consisting of mucins and various inorganic salts dissolved in water, with suspended epithelial cells and leukocytes. The mucosa, or mucous membrane, is the membrane covered with epithelium that lines the tubular organs of the body. Mucins are carbohydrate-rich glycoproteins that have a lubricating and protective function." [GOC:add, ISBN:068340007X, ISBN:0721662544] synonym: "mucus production" EXACT [GOC:add] is_a: GO:0007589 ! body fluid secretion property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070293 name: renal absorption namespace: biological_process def: "A renal system process in which water, ions, glucose and proteins are taken up from the collecting ducts, glomerulus and proximal and distal loops of the nephron." [GOC:dph, GOC:mah, GOC:yaf] synonym: "nephron absorption" EXACT [GOC:mah] synonym: "renal reabsorption" EXACT [GOC:dph] is_a: GO:0003014 ! renal system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070295 name: renal water absorption namespace: biological_process def: "A renal system process in which water is taken up from the collecting ducts and proximal and distal loops of the nephron." [GOC:dph, GOC:mah] synonym: "nephron water absorption" EXACT [GOC:mah] synonym: "renal water reabsorption" EXACT [GOC:dph] is_a: GO:0003097 ! renal water transport is_a: GO:0070293 ! renal absorption property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070661 name: leukocyte proliferation namespace: biological_process def: "The expansion of a leukocyte population by cell division." [GOC:add] is_a: GO:0008283 ! cell proliferation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070727 name: cellular macromolecule localization namespace: biological_process def: "Any process in which a macromolecule is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell." [GOC:mah] synonym: "cellular macromolecule localisation" EXACT [GOC:mah] is_a: GO:0033036 ! macromolecule localization is_a: GO:0051641 ! cellular localization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070887 name: cellular response to chemical stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus." [GOC:mah] is_a: GO:0042221 ! response to chemical stimulus is_a: GO:0051716 ! cellular response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070925 name: organelle assembly namespace: biological_process def: "The aggregation, arrangement and bonding together of a set of components to form an organelle. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:mah] subset: goslim_yeast ! Yeast GO slim is_a: GO:0071844 ! cellular component assembly at cellular level relationship: part_of GO:0006996 ! organelle organization property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071103 name: DNA conformation change namespace: biological_process def: "A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "DNA conformation modification" EXACT [GOC:mah] is_a: GO:0006259 ! DNA metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071625 name: vocalization behavior namespace: biological_process def: "The behavior in which an organism produces sounds by a mechanism involving its respiratory system." [GOC:mah] synonym: "vocalisation behaviour" EXACT [GOC:mah] is_a: GO:0007610 ! behavior property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071626 name: mastication namespace: biological_process def: "The process of biting and mashing food with the teeth prior to swallowing." [GOC:gvg] synonym: "chewing" EXACT [GOC:mah] is_a: GO:0022600 ! digestive system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071695 name: anatomical structure maturation namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure to attain its fully functional state." [GOC:mah] is_a: GO:0021700 ! developmental maturation relationship: part_of GO:0048856 ! anatomical structure development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071702 name: organic substance transport namespace: biological_process def: "The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon." [CHEBI:50860, GOC:mah] is_a: GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071705 name: nitrogen compound transport namespace: biological_process def: "The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [CHEBI:51143, GOC:mah] is_a: GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071706 name: tumor necrosis factor superfamily cytokine production namespace: biological_process def: "The appearance of any member of the TNF superfamily due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:add] synonym: "TNF superfamily production" RELATED [GOC:rv] synonym: "TNFSF cytokine production" EXACT [GOC:add] is_a: GO:0001816 ! cytokine production property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071707 name: immunoglobulin heavy chain V-D-J recombination namespace: biological_process def: "The process in which immunoglobulin heavy chain V, D, and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS)." [GOC:add, ISBN:0781735149] synonym: "immunoglobulin V(D)J joining" BROAD [GOC:add] synonym: "immunoglobulin V(D)J recombination" BROAD [GOC:add] synonym: "immunoglobulin V-D-J joining" EXACT [GOC:add] is_a: GO:0033152 ! immunoglobulin V(D)J recombination property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071708 name: immunoglobulin light chain V-J recombination namespace: biological_process def: "The process in which immunoglobulin light chain V and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS)." [GOC:add, ISBN:0781735149] synonym: "immunoglobulin V(D)J joining" BROAD [GOC:add] synonym: "immunoglobulin V(D)J recombination" BROAD [GOC:add] synonym: "immunoglobulin V-J joining" EXACT [GOC:add] is_a: GO:0033152 ! immunoglobulin V(D)J recombination property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071840 name: cellular component organization or biogenesis namespace: biological_process def: "A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component." [GOC:mah] is_a: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071841 name: cellular component organization or biogenesis at cellular level namespace: biological_process def: "A process that is carried out at the cellular level, and results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component." [GOC:mah] is_a: GO:0009987 ! cellular process is_a: GO:0071840 ! cellular component organization or biogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071842 name: cellular component organization at cellular level namespace: biological_process def: "A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of a cellular component." [GOC:mah] is_a: GO:0016043 ! cellular component organization is_a: GO:0071841 ! cellular component organization or biogenesis at cellular level property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071844 name: cellular component assembly at cellular level namespace: biological_process def: "A process that is carried out at the cellular level and results in the aggregation, arrangement and bonding together of a cellular component." [GOC:mah] is_a: GO:0022607 ! cellular component assembly is_a: GO:0071842 ! cellular component organization at cellular level property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071845 name: cellular component disassembly at cellular level namespace: biological_process def: "A process that is carried out at the cellular level and results in the breakdown of a cellular component." [GOC:mah] is_a: GO:0022411 ! cellular component disassembly is_a: GO:0071842 ! cellular component organization at cellular level property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071887 name: leukocyte apoptosis namespace: biological_process def: "The process of apoptosis in a leukocyte." [CL:0000738, GOC:BHF, GOC:mah] comment: Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542). is_a: GO:0006915 ! apoptotic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071971 name: extracellular vesicular exosome assembly namespace: biological_process def: "The aggregation, arrangement and bonding together of a set of components to form an extracellular vesicular exosome, a membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane." [GOC:mah, GOC:tfm, PMID:19442504] is_a: GO:0070925 ! organelle assembly property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0072175 name: epithelial tube formation namespace: biological_process def: "The developmental process pertaining to the initial formation of an epithelial tube." [GOC:mtg_kidney_jan10] is_a: GO:0035148 ! tube formation relationship: part_of GO:0060562 ! epithelial tube morphogenesis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0072358 name: cardiovascular system development namespace: biological_process def: "The process whose specific outcome is the progression of the cardiovascular system over time, from its formation to the mature structure. The cardiovascular system is the anatomical system that has as its parts the heart and blood vessels." [GOC:mah, UBERON:0004535] is_a: GO:0048731 ! system development relationship: part_of GO:0072359 ! circulatory system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0072359 name: circulatory system development namespace: biological_process def: "The process whose specific outcome is the progression of the circulatory system over time, from its formation to the mature structure. The circulatory system is the organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis." [GOC:mah, UBERON:0001009] is_a: GO:0048731 ! system development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0072507 name: divalent inorganic cation homeostasis namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of divalent cations within an organism or cell." [GOC:mah] comment: Note that this term was split from 'di-, tri-valent inorganic cation homeostasis ; GO:0055066' (sibling term 'trivalent inorganic cation homeostasis' ; GO:0072508'). subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0055080 ! cation homeostasis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0072593 name: reactive oxygen species metabolic process namespace: biological_process def: "The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers." [CHEBI:26523, GOC:mah] synonym: "ROS metabolic process" EXACT [CHEBI:26523, GOC:mah] synonym: "reactive oxygen species metabolism" EXACT [GOC:mah] is_a: GO:0044237 ! cellular metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0080090 name: regulation of primary metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [PMID:19211694] is_a: GO:0019222 ! regulation of metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0080134 name: regulation of response to stress namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:dhl] is_a: GO:0048583 ! regulation of response to stimulus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0090022 name: regulation of neutrophil chemotaxis namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding." [GOC:dph, GOC:tb] is_a: GO:0002688 ! regulation of leukocyte chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0090023 name: positive regulation of neutrophil chemotaxis namespace: biological_process def: "Any process that increases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding." [GOC:dph, GOC:tb] is_a: GO:0002690 ! positive regulation of leukocyte chemotaxis is_a: GO:0090022 ! regulation of neutrophil chemotaxis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0090257 name: regulation of muscle system process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a muscle system process, a multicellular organismal process carried out by any of the organs or tissues in a muscle system." [GOC:dph, GOC:tb] is_a: GO:0044057 ! regulation of system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0090304 name: nucleic acid metabolic process namespace: biological_process def: "Any cellular metabolic process involving nucleic acids." [GOC:dph, GOC:tb] is_a: GO:0006139 ! nucleobase-containing compound metabolic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0097205 name: renal filtration namespace: biological_process def: "A renal system process in which fluid circulating through the body is filtered through a barrier system." [GOC:pr, GOC:sart] is_a: GO:0003014 ! renal system process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000026 name: regulation of multicellular organismal development namespace: biological_process def: "Any process that modulates the frequency, rate or extent of multicellular organismal development." [GOC:obol] is_a: GO:0050793 ! regulation of developmental process is_a: GO:0051239 ! regulation of multicellular organismal process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000027 name: regulation of organ morphogenesis namespace: biological_process def: "Any process that modulates the frequency, rate or extent of organ morphogenesis." [GOC:obol] synonym: "regulation of histogenesis and organogenesis" RELATED [GOC:obol] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:2000026 ! regulation of multicellular organismal development property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000070 name: regulation of response to water deprivation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of response to water deprivation." [GOC:obol] synonym: "regulation of drought tolerance" RELATED [GOC:obol] synonym: "regulation of response to dehydration" EXACT [GOC:obol] synonym: "regulation of response to drought" EXACT [GOC:obol] synonym: "regulation of response to thirst" EXACT [GOC:obol] is_a: GO:0080134 ! regulation of response to stress property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000106 name: regulation of leukocyte apoptosis namespace: biological_process def: "Any process that modulates the frequency, rate or extent of leukocyte apoptosis." [GOC:BHF] is_a: GO:0042981 ! regulation of apoptotic process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000145 name: regulation of cell motility namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell motility." [GOC:mah] synonym: "regulation of cell locomotion" EXACT [GOC:obol] synonym: "regulation of cell movement" RELATED [GOC:obol] synonym: "regulation of movement of a cell" EXACT [GOC:obol] is_a: GO:0040012 ! regulation of locomotion is_a: GO:0051270 ! regulation of cellular component movement property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000147 name: positive regulation of cell motility namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of cell motility." [GOC:mah] synonym: "positive regulation of cell locomotion" EXACT [GOC:obol] synonym: "positive regulation of cell movement" RELATED [GOC:obol] synonym: "positive regulation of movement of a cell" EXACT [GOC:obol] is_a: GO:0040017 ! positive regulation of locomotion is_a: GO:0051272 ! positive regulation of cellular component movement is_a: GO:2000145 ! regulation of cell motility property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000514 name: regulation of CD4-positive, alpha-beta T cell activation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of CD4-positive, alpha-beta T cell activation." [GOC:obol] is_a: GO:0046634 ! regulation of alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:2000516 name: positive regulation of CD4-positive, alpha-beta T cell activation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of CD4-positive, alpha-beta T cell activation." [GOC:obol] is_a: GO:0046635 ! positive regulation of alpha-beta T cell activation is_a: GO:2000514 ! regulation of CD4-positive, alpha-beta T cell activation property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: CL:0000000 name: cell namespace: cell def: "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah] comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one). xref: FMA:68646 xref: GO:0005623 xref: KUPO:0000002 xref: WBbt:0004017 xref: XAO:0003012 disjoint_from: UBERON:0000470 ! cell part disjoint_from: UBERON:0000476 ! acellular anatomical structure [Term] id: CL:0000001 name: primary cell culture cell namespace: cell def: "A cell culture cell that is part of a cell culture that does not have the capacity to proliferate indefinitely." [ReO:mhb] synonym: "mortal cell culture cell" EXACT [ReO:mhb] synonym: "primary cell line cell" RELATED [] xref: BTO:0002290 is_a: CL:0000010 ! cell culture cell [Term] id: CL:0000002 name: permanent cell line cell namespace: cell def: "A cell culture cell that is part of a cell line having the capacity to proliferate indefinitely if given appropriate space and nutrients." [ReO:mhb] synonym: "immortal cell line cell" EXACT [ReO:mhb] synonym: "permanent cell culture cell" EXACT [] is_a: CL:0000010 ! cell culture cell [Term] id: CL:0000003 name: native cell namespace: cell def: "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)." [CARO:mah] comment: To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12). synonym: "cell in vivo" NARROW [] xref: CARO:0000013 is_a: CL:0000000 ! cell [Term] id: CL:0000004 name: cell by organism namespace: cell def: "A classification of cells by the organisms within which they are contained." [FB:ma] is_a: CL:0000003 ! native cell [Term] id: CL:0000005 name: fibroblast neural crest derived namespace: cell is_a: CL:0000057 ! fibroblast relationship: develops_from CL:0000008 ! cranial neural crest cell [Term] id: CL:0000006 name: neuronal receptor cell (sensu Animalia) namespace: cell is_a: CL:0000197 ! receptor cell is_a: CL:0000540 ! neuron [Term] id: CL:0000007 name: early embryonic cell namespace: cell def: "A cell found in the embryo before the formation of all the gem layers is complete." [GOC:tfm] is_a: CL:0002321 ! embryonic cell [Term] id: CL:0000008 name: cranial neural crest cell namespace: cell is_a: CL:0000333 ! neural crest cell [Term] id: CL:0000009 name: fusiform initial namespace: cell alt_id: CL:0000274 def: "Obsolete. Use PO:0000079 from Plant Ontology instead. An elongated cell with approximately wedge-shaped ends, found in the vascular cambium, which gives rise to the elements of the axial system in the secondary vascular tissues." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000079 synonym: "xylem initial" RELATED [] synonym: "xylem mother cell" RELATED [] [Term] id: CL:0000010 name: cell culture cell namespace: cell def: "A cell in vitro that is propagated as part of a cell culture." [ReO:mhb] comment: The class has been re-labeled to 'culture' instead of 'line', as this class intends to cover cultured cells of multicellular and unicellular organisms, and both immortal and mortal cultured cells. 'Cell line' has different meanings to different people, in some cases referring to a culture that has been passaged, and in others referring to cultures that are immortal. 'Cell line cell' is included, however, as a narrow synonym. synonym: "cell line cell" NARROW [] is_a: CL:0000578 ! experimentally modified cell in vitro [Term] id: CL:0000011 name: trunk neural crest cell namespace: cell is_a: CL:0000333 ! neural crest cell relationship: part_of UBERON:0003083 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! trunk neural crest [Term] id: CL:0000012 name: cell by class namespace: cell is_a: CL:0000003 ! native cell [Term] id: CL:0000013 name: dentine secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000014 name: germ line stem cell namespace: cell synonym: "germline stem cell" EXACT [] is_a: CL:0000034 ! stem cell is_a: CL:0000039 ! germ line cell [Term] id: CL:0000015 name: male germ cell namespace: cell xref: FMA:72290 xref: MA:0002765 is_a: CL:0000586 ! germ cell relationship: part_of UBERON:0000079 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! male reproductive system [Term] id: CL:0000016 name: male germ line stem cell namespace: cell is_a: CL:0000014 ! germ line stem cell is_a: CL:0000015 ! male germ cell [Term] id: CL:0000017 name: spermatocyte namespace: cell def: "A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." [GOC:tfm, MESH:A.05.360.490.890.880] xref: BTO:0001275 xref: EMAPA:31484 xref: FBbt:00004936 xref: FMA:84049 xref: WBbt:0006799 is_a: CL:0000015 ! male germ cell is_a: CL:0002625 ! seminiferous tubule epithelial cell relationship: develops_from CL:0000020 ! spermatogonium [Term] id: CL:0000018 name: spermatid namespace: cell def: "A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa." [MESH:A.05.360.490.890.860] synonym: "nematoblast" EXACT [] xref: BTO:0001274 xref: EMAPA:31486 xref: FBbt:00004942 xref: FMA:72294 xref: WBbt:0006800 is_a: CL:0000015 ! male germ cell is_a: CL:0002625 ! seminiferous tubule epithelial cell relationship: develops_from CL:0000657 ! secondary spermatocyte [Term] id: CL:0000019 name: sperm namespace: cell def: "A mature male germ cell that develops from a spermatid." [GOC:tfm, MESH:A.05.360.490.890] synonym: "sperm cell" EXACT [] synonym: "spermatozoid" EXACT [] synonym: "spermatozoon" EXACT [] xref: BTO:0001277 xref: BTO:0002046 xref: FBbt:00004954 xref: FMA:67338 xref: WBbt:0006798 is_a: CL:0000408 ! male gamete relationship: develops_from CL:0000018 ! spermatid relationship: develops_from CL:0000087 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! male germ line stem cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0000473 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! testis [Term] id: CL:0000020 name: spermatogonium namespace: cell def: "An euploid male germ cell of an early stage of spermatogenesis." [MESH:A.05.360.490.890.900] xref: BTO:0000958 xref: EMAPA:31482 xref: FBbt:00004935 xref: FMA:72291 is_a: CL:0000015 ! male germ cell is_a: CL:0002625 ! seminiferous tubule epithelial cell relationship: develops_from CL:0000087 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! male germ line stem cell (sensu Nematoda and Protostomia) [Term] id: CL:0000021 name: female germ cell namespace: cell def: "Female germ cell is a germ cell that supports female gamete production." [GOC:tfm, PMID:11023867, PMID:20454446] xref: MA:0000388 is_a: CL:0000586 ! germ cell relationship: part_of UBERON:0000474 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! female reproductive system [Term] id: CL:0000022 name: female germ line stem cell namespace: cell is_a: CL:0000014 ! germ line stem cell is_a: CL:0000021 ! female germ cell is_a: CL:0000086 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! germ line stem cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0000474 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! female reproductive system [Term] id: CL:0000023 name: oocyte namespace: cell def: "A female germ cell that has entered meiosis." [GOC:tfm, ISBN:0721662544] xref: BTO:0000964 xref: FBbt:00004886 xref: FMA:18644 xref: WBbt:0006797 is_a: CL:0000021 ! female germ cell is_a: CL:0000300 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! gamete relationship: develops_from CL:0000088 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! female germ line stem cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0001305 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! ovarian follicle relationship: part_of UBERON:0003199 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! egg chamber [Term] id: CL:0000024 name: oogonial cell namespace: cell def: "An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes." [GOC:tfm, ISBN:0721662544] xref: FMA:83673 is_a: CL:0000021 ! female germ cell relationship: develops_from CL:0000670 ! primordial germ cell [Term] id: CL:0000025 name: egg namespace: cell def: "A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization." [GOC:tfm, ISBN:0721662544] synonym: "mature oocyte" EXACT [] synonym: "ovum" EXACT [] xref: BTO:0000369 xref: BTO:0003801 xref: FBbt:00000034 xref: FMA:67343 xref: MA:0000388 is_a: CL:0000675 ! female gamete relationship: develops_from CL:0000655 ! secondary oocyte relationship: part_of UBERON:0000474 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! female reproductive system [Term] id: CL:0000026 name: invertebrate nurse cell namespace: cell def: "A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte." [GOC:tfm, PMID:15848391] synonym: "nurse cell" RELATED [] xref: BTO:0000953 xref: FBbt:00004878 is_a: CL:0000039 ! germ line cell is_a: CL:0000412 ! polyploid cell relationship: develops_from CL:0000722 ! cystoblast relationship: develops_from CL:0000088 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! female germ line stem cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0003199 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! egg chamber [Term] id: CL:0000027 name: smooth muscle cell neural crest derived namespace: cell is_a: CL:0000192 ! smooth muscle cell relationship: develops_from CL:0000008 ! cranial neural crest cell [Term] id: CL:0000028 name: CNS neuron (sensu Nematoda and Protostomia) namespace: cell is_a: CL:0000540 ! neuron relationship: develops_from CL:0000338 ! neuroblast (sensu Nematoda and Protostomia) [Term] id: CL:0000029 name: neuron neural crest derived namespace: cell is_a: CL:0000540 ! neuron relationship: develops_from CL:0002676 ! neural crest derived neuroblast [Term] id: CL:0000030 name: glioblast namespace: cell xref: FBbt:00005145 is_a: CL:0000055 ! non-terminally differentiated cell relationship: develops_from CL:0000133 ! neurectodermal cell relationship: develops_from UBERON:0002346 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neurectoderm relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! nervous system [Term] id: CL:0000031 name: neuroblast namespace: cell xref: BTO:0000930 xref: FBbt:00005146 xref: FMA:70563 is_a: CL:0000047 ! neuronal stem cell is_a: CL:0000055 ! non-terminally differentiated cell [Term] id: CL:0000032 name: neuroplacodal cell namespace: cell def: "A cell of a platelike structure, especially a thickened plate of ectoderm in the early embryo, from which a sense organ develops." [GOC:tfm, ISBN:0618947256] synonym: "neural placode cell" EXACT [] is_a: CL:0002321 ! embryonic cell relationship: develops_from CL:0000114 ! surface ectodermal cell [Term] id: CL:0000033 name: apocrine cell namespace: cell def: "An apocrine cell is a secretory cell characterized loss of part of the cytoplasm during the process of secretion - secretions are budded off through the plasma membrane producing membrane bound vesicles containing the secreted substance." [GOC:tfm, ISBN:0721662544] is_a: CL:0000151 ! secretory cell [Term] id: CL:0000034 name: stem cell namespace: cell def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A.11.872] xref: FMA:63368 is_a: CL:0000144 ! cell by function [Term] id: CL:0000035 name: single fate stem cell namespace: cell def: "A stem cell that self-renews as well as give rise to a single mature cell type." [GOC:tfm] synonym: "unipotent stem cell" EXACT [] synonym: "unipotential stem cell" EXACT [] xref: FMA:70569 is_a: CL:0000723 ! somatic stem cell [Term] id: CL:0000036 name: epithelial fate stem cell namespace: cell is_a: CL:0000035 ! single fate stem cell [Term] id: CL:0000037 name: hematopoietic stem cell namespace: cell def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119." [GOC:DSD, GOC:add, GOC:tfm, PMID:19022770] comment: Markers differ between species, and two sets of markers have been described for mice. synonym: "HSC" EXACT [] synonym: "blood forming stem cell" EXACT [] synonym: "colony forming unit hematopoietic" RELATED [] synonym: "hemopoietic stem cell" EXACT [] xref: BTO:0000725 xref: FMA:70337 xref: FMA:86475 is_a: CL:0000988 ! hematopoietic cell relationship: develops_from CL:0000566 ! angioblastic mesenchymal cell relationship: part_of UBERON:0002390 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! hematopoietic system relationship: part_of UBERON:0003061 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! blood island relationship: part_of UBERON:0003105 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dorsal lateral plate region [Term] id: CL:0000038 name: erythroid progenitor cell namespace: cell def: "A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative)." [GOC:add, ISBN:0721601464] synonym: "BFU-E" RELATED [] synonym: "CFU-E" RELATED [] synonym: "blast forming unit erythroid" RELATED [] synonym: "burst forming unit erythroid" RELATED [] synonym: "colony forming unit erythroid" RELATED [] synonym: "erythroid stem cell" RELATED [] xref: BTO:0004911 is_a: CL:0000764 ! erythroid lineage cell is_a: CL:0000839 ! myeloid lineage restricted progenitor cell relationship: develops_from CL:0000050 ! megakaryocyte-erythroid progenitor cell [Term] id: CL:0000039 name: germ line cell namespace: cell def: "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544] comment: Originally this term had some plant germ line cell children. is_a: CL:0000144 ! cell by function [Term] id: CL:0000040 name: monoblast namespace: cell def: "A myeloid progenitor cell committed to the monocyte lineage. This cell is CD11b-positive, has basophilic cytoplasm, euchromatin, and the presence of a nucleolus." [GOC:add, PMID:1104740, http://www.clt.astate.edu/wwilliam/, http://www.copewithcytokines.de] comment: Morphology: mononuclear cell, diameter 12-20 _M, non-granular, N/C ratio 3/1 - 4/1; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; fetal: liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid. synonym: "CFU-M" RELATED [] synonym: "colony forming unit macrophage" RELATED [] synonym: "monocyte stem cell" RELATED [] xref: FMA:83553 is_a: CL:0002194 ! monopoietic cell relationship: develops_from CL:0002009 ! macrophage dendritic cell progenitor [Term] id: CL:0000041 name: mature eosinophil namespace: cell def: "A fully differentiated eosinophil, a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Cells are also differentiated from other granulocytes by a small nuclear-to-cytoplasm ratio (1:3). This cell type is CD49d-positive." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, http://www.cap.org] comment: Eosinophils are CD125-positive (IL-5R), GM-CSFR-positive, IL-3R-positive, VLA4-positive. They can also express MHC Class I & II, CD4, CD9, CD11a, CD11b, CD11c, CD13, CD15, CD16, CD17, CD18, CD24, CD25,CD28, CD29, CD32, CD33, CD35, CD37, CD39, CD43, CD44, CD45, CD45RB, CD45RO, CD46, CD47, CD48, CD49d, CD49f, CD50, CD52, CD53, CD54, CD55, CD58, CD59, CD62L, CD63, CD65, CD66, CD69, CD71, CD76, CD80, CD81, CD82, CD86, CD87, CD88, CD89, CD92, CD95, CD97, CD98, CD99, CD100, CD101, CD116, CD117, CD119, CD120, CD123, CD124, CD125, CD131, CD137, CD139, CD148, CD149, CD151, CD153, CD156, CD162, CD161, CD162, CD165, CD174, CD182, CD183, CD191, CD192, CD193, CD196, CD213, IL9R, ad integrin, beta-7 integrin, FceRI, IL13Ra1, TGFbR, PAFR, LTB4R, C3aR, CystLT1R, CystLT2R, fMLPR, CRTH2 (PGD2 receptor), histamine 4R, IDO, KYN, PAR-2, Siglec-8, Siglec-10, LIR1, LIR2, LIR3, LIR7, TLR7, TLR8, and VLA-4. Eosinophils can also secrete CXCL1, eotaxin-1, GM-CSF, IL-2, IL-3, IL-4, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-16, IL-18, IFN-gamma, LTC4, MIP-1alpha, NGF, PAF, RANTES, substance P, TGF-alpha, TGF-beta, TNF-alpha, and VIP. synonym: "mature eosinocyte" EXACT [] synonym: "mature eosinophil leucocyte" EXACT [] synonym: "mature eosinophil leukocyte" EXACT [] synonym: "polymorphonuclear leucocyte" BROAD [] synonym: "polymorphonuclear leukocyte" BROAD [] is_a: CL:0000771 ! eosinophil relationship: develops_from CL:0000774 ! band form eosinophil [Term] id: CL:0000042 name: neutrophilic myeloblast namespace: cell def: "A myeloblast committed to the neutrophil lineage. This cell type is GATA-1 positive, C/EBPa-positive, AML-1-positive, c-myb-positive and has low expression of PU.1 transcription factor." [GOC:add, ISBN:0721601464, PMID:12560239, PMID:15514007] comment: These cells are CD11b-negative, CD15-negative, CD16-negative, CD35-negative, CD49d-positive, CD68-positive, lactotransferrin-negative, and fMLP receptor-negative. They are found in the Band 3 fraction. synonym: "neutrophilic granuloblast" RELATED [] is_a: CL:0000835 ! myeloblast relationship: develops_from CL:0000834 ! neutrophil progenitor cell [Term] id: CL:0000043 name: mature basophil namespace: cell alt_id: CL:0000739 def: "A fully differentiated basophil, a granular leukocyte with an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, PMID:18466030, PMID:19231594, PMID:20837449, http://www.cap.org] comment: Mature basophils are also capable of producing IL-3, IL-5, IL-6, IL-8, IL-13, IL-25, CCL22, tslp, vegf, and LTC4. synonym: "mature basophil leucocyte" EXACT [] synonym: "mature basophil leukocyte" EXACT [] synonym: "polymorphonuclear leucocyte" BROAD [] synonym: "polymorphonuclear leukocyte" BROAD [] xref: BTO:0001026 is_a: CL:0000767 ! basophil is_a: CL:0002274 ! histamine secreting cell relationship: develops_from CL:0000770 ! band form basophil [Term] id: CL:0000045 name: thymus processed stem cell namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Consider using term 'pro-T cell ; CL:0000827' or the term 'thymocyte ; CL:0000893' or one of its children instead. [Term] id: CL:0000046 name: bursa processed stem cell namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Consider using term 'pro-B cell ; CL:0000826' or the term 'immature B cell ; CL:0000816 or one of its children instead. [Term] id: CL:0000047 name: neuronal stem cell namespace: cell def: "Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, MESH:D058953, PMID:15247488, http://en.wikipedia.org/wiki/Neural_stem_cell] synonym: "NSC" EXACT [] synonym: "neural stem cell" EXACT [] xref: BTO:0002881 xref: FMA:86684 is_a: CL:0000048 ! multi fate stem cell relationship: develops_from CL:0000133 ! neurectodermal cell [Term] id: CL:0000048 name: multi fate stem cell namespace: cell def: "A stem cell that can give rise to multiple lineages of cells." [GOC:add] synonym: "multi-fate stem cell" EXACT [] synonym: "multifate stem cell" EXACT [] synonym: "multipotent cell" EXACT [] synonym: "multipotent stem cell" EXACT [] xref: FMA:84789 is_a: CL:0000723 ! somatic stem cell [Term] id: CL:0000049 name: common myeloid progenitor namespace: cell def: "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. These cells are CD34-positive, and express Gata-1, Gata2, C/EBPa, and Pu.1." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0878932437, MESH:D023461, PMCID:PMC2212039, PMID:10724173, PMID:16551251] comment: CMP are reportedly CD38-positive, CD45RA-negative, and CD123-positive. synonym: "CFU-S" RELATED [ISBN:0878932437] synonym: "CMP" EXACT [ISBN:0878932437] synonym: "cfu-gemm" RELATED [ISBN:0878932437] synonym: "colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte" RELATED [ISBN:0878932437] synonym: "common myeloid precursor" EXACT [] synonym: "multipotential myeloid stem cell" RELATED [ISBN:0878932437] synonym: "myeloid stem cell" RELATED [ISBN:0878932437] synonym: "pluripotent stem cell (bone marrow)" RELATED [ISBN:0878932437] is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell [Term] id: CL:0000050 name: megakaryocyte-erythroid progenitor cell namespace: cell def: "A progenitor cell committed to the megakaryocyte and erythroid lineages." [GOC:add, GOC:tfm] synonym: "CFU-EM" EXACT [] synonym: "MEP" EXACT [] synonym: "colony forming unit erythroid megakaryocyte" EXACT [] synonym: "megakaryocyte/erythroid progenitor cell" EXACT [] is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell is_a: CL:0000839 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! myeloid lineage restricted progenitor cell relationship: develops_from CL:0000049 ! common myeloid progenitor [Term] id: CL:0000051 name: common lymphoid progenitor namespace: cell alt_id: CL:0000044 def: "A oligopotent progenitor cell committed to the lymphoid lineage." [GOC:add, GOC:dsd, GOC:tfm, PMID:10407577, PMID:16551251] comment: CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative. synonym: "CLP" EXACT [] synonym: "ELP" RELATED [] synonym: "committed lymphopoietic stem cell" RELATED [] synonym: "common lymphocyte precursor" EXACT [] synonym: "common lymphocyte progenitor" EXACT [] synonym: "common lymphoid precursor" EXACT [] synonym: "early lymphocyte progenitor" RELATED [] synonym: "lymphoid stem cell" RELATED [] synonym: "lymphopoietic stem cell" RELATED [] is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell is_a: CL:0000838 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! lymphoid lineage restricted progenitor cell [Term] id: CL:0000052 name: totipotent stem cell namespace: cell def: "A stem cell from which all cells of the body can form." [GOC:add, GOC:tfm] synonym: "totipotential stem cell" EXACT [] xref: FMA:84790 is_a: CL:0000723 ! somatic stem cell [Term] id: CL:0000053 name: enamel secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000054 name: bone matrix secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000055 name: non-terminally differentiated cell namespace: cell def: "A precursor cell with a limited number of potential fates." [SANBI:mhl] synonym: "blast cell" EXACT [] xref: BTO:0000125 xref: FMA:84782 is_a: CL:0000012 ! cell by class [Term] id: CL:0000056 name: myoblast namespace: cell def: "A precursor cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes." [GOC:tfm, MESH:A.11.635] xref: BTO:0000222 xref: FBbt:00005083 xref: FMA:70335 is_a: CL:0000680 ! muscle precursor cell is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryonic structure relationship: develops_from CL:0000355 ! muscle stem cell relationship: part_of UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo [Term] id: CL:0000057 name: fibroblast namespace: cell def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." [ISBN:0517223651, MESH:A.11.329.228, http://63.198.234.228/OpenFMA/Fibroblast.html] comment: These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. xref: BTO:0000452 xref: FMA:63877 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0002320 ! connective tissue cell is_a: CL:0000222 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! mesodermal cell relationship: develops_from CL:0000134 ! mesenchymal cell [Term] id: CL:0000058 name: chondroblast namespace: cell def: "An immature cartilage-producing cell found in growing cartilage." [GOC:tfm, ISBN:0618947256] synonym: "chrondoplast" EXACT [] xref: BTO:0003607 xref: FMA:66783 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000222 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesodermal cell relationship: develops_from CL:0000222 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! mesodermal cell relationship: develops_from UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesoderm [Term] id: CL:0000059 name: ameloblast namespace: cell def: "A cylindrical epithelial cell in the innermost layer of the enamel organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamel), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992)." [GOC:tfm, MESH:A.11.436.107] xref: BTO:0001663 xref: FMA:70576 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0002159 ! general ecto-epithelial cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0000060 name: odontoblast namespace: cell def: "One of the cells forming the outer surface of dental pulp that produces tooth dentin." [ISBN:0618947256] xref: BTO:0001769 xref: FMA:62999 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0002159 ! general ecto-epithelial cell relationship: develops_from CL:0000008 ! cranial neural crest cell relationship: part_of UBERON:0001754 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dental pulp [Term] id: CL:0000061 name: cementoblast namespace: cell def: "A cell of ectomesenchymal origin that aids in the formation the cementum layer on the roots of teeth." [ISBN:0781733901] xref: FMA:63002 is_a: CL:0000062 ! osteoblast relationship: part_of UBERON:0005176 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! tooth enamel organ [Term] id: CL:0000062 name: osteoblast namespace: cell def: "A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629] xref: BTO:0001593 xref: FMA:66780 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000375 ! osteoprogenitor cell relationship: develops_from CL:0000008 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranial neural crest cell [Term] id: CL:0000063 name: cell by histology namespace: cell def: "A classification of cells by their microscopic appearance." [FB:ma, GOC:tfm] is_a: CL:0000012 ! cell by class [Term] id: CL:0000064 name: ciliated cell namespace: cell def: "A cell that has a filiform extrusion of the cell surface." [GOC:tfm] xref: XAO:0000031 is_a: CL:0000063 ! cell by histology relationship: part_of UBERON:0001003 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! epidermis [Term] id: CL:0000065 name: ependymal cell namespace: cell def: "A neurectoderm derived cell that lines the neural lumen." [GOC:tfm, JB:jb, PMID:9550134] synonym: "ependymocyte" EXACT [] xref: BTO:0001724 xref: FMA:70550 is_a: CL:0000067 ! ciliated epithelial cell is_a: CL:0000710 ! neurecto-epithelial cell relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! nervous system [Term] id: CL:0000066 name: epithelial cell namespace: cell def: "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436] synonym: "epitheliocyte" EXACT [] xref: BTO:0000414 xref: FBbt:00000124 xref: FMA:66768 xref: WBbt:0003672 is_a: CL:0000063 ! cell by histology is_a: CL:0000548 ! animal cell relationship: part_of UBERON:0000483 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! epithelium relationship: part_of UBERON:0000483 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! epithelium relationship: part_of UBERON:0000483 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! epithelium [Term] id: CL:0000067 name: ciliated epithelial cell namespace: cell def: "An epithelial cell that has a cillia." [GOC:tfm] xref: FMA:70605 is_a: CL:0000064 ! ciliated cell is_a: CL:0000075 ! columnar/cuboidal epithelial cell [Term] id: CL:0000068 name: duct epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000069 name: branched duct epithelial cell namespace: cell is_a: CL:0000068 ! duct epithelial cell [Term] id: CL:0000070 name: epithelial cell of gland namespace: cell is_obsolete: true [Term] id: CL:0000071 name: blood vessel endothelial cell namespace: cell def: "An endothelial cell that lines the vasculature." [GOC:tfm] synonym: "cuboidal endothelial cell of vascular tree" EXACT [] is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0002139 ! endothelial cell of vascular tree is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0002546 ! embryonic blood vessel endothelial progenitor cell [Term] id: CL:0000072 name: non-branched duct epithelial cell namespace: cell is_a: CL:0000068 ! duct epithelial cell relationship: develops_from CL:0000222 ! mesodermal cell [Term] id: CL:0000073 name: barrier epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000074 name: epithem cell namespace: cell def: "Obsolete. Use PO:0000066 from Plant Ontology instead. A cell that constitutes the mesophyll of a hydathode and is located between the xylem endings and the epidermis. Proposed to be involved in the retrieval of solutes from the xylem sap." [ISBN:0471245208, PMID:12662305] is_obsolete: true comment: replaced_by: PO:0000066 [Term] id: CL:0000075 name: columnar/cuboidal epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000076 name: squamous epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell [Term] id: CL:0000077 name: mesothelial cell namespace: cell def: "A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544] synonym: "mesotheliocyte" EXACT [] xref: FMA:66773 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000213 ! lining cell relationship: develops_from CL:0000222 ! mesodermal cell [Term] id: CL:0000078 name: peridermal cell namespace: cell is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000079 name: stratified epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000357 ! stratified epithelial stem cell [Term] id: CL:0000080 name: circulating cell namespace: cell def: "A cell which moves among different tissues of the body, via blood, lymph, or other medium." [GOC:add] is_a: CL:0000144 ! cell by function [Term] id: CL:0000081 name: blood cell namespace: cell def: "A cell found predominately in the blood." [GOC:add, GOC:tfm] xref: FMA:62844 is_a: CL:0000988 ! hematopoietic cell is_a: CL:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! circulating cell relationship: part_of UBERON:0000178 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blood [Term] id: CL:0000082 name: epithelial cell of lung namespace: cell xref: BTO:0004299 relationship: part_of UBERON:0000115 ! lung epithelium [Term] id: CL:0000083 name: epithelial cell of pancreas namespace: cell def: "An epithelial cell of the pancreas." [GOC:tfm] xref: BTO:0000028 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000223 ! endodermal cell [Term] id: CL:0000084 name: T cell namespace: cell alt_id: CL:0000804 alt_id: CL:0000812 def: "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "T lymphocyte" EXACT [] synonym: "T-cell" EXACT [] synonym: "T-lymphocyte" EXACT [] synonym: "immature T cell" RELATED [] synonym: "mature T cell" RELATED [] xref: BTO:0000782 xref: FMA:62870 is_a: CL:0000542 ! lymphocyte relationship: develops_from CL:0000827 ! pro-T cell relationship: develops_from CL:0000893 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! thymocyte [Term] id: CL:0000085 name: germ line stem cell (sensu Vertebrata) namespace: cell is_a: CL:0000014 ! germ line stem cell [Term] id: CL:0000086 name: germ line stem cell (sensu Nematoda and Protostomia) namespace: cell xref: FBbt:00004861 is_a: CL:0000014 ! germ line stem cell [Term] id: CL:0000087 name: male germ line stem cell (sensu Nematoda and Protostomia) namespace: cell xref: FBbt:00004929 is_a: CL:0000016 ! male germ line stem cell is_a: CL:0000086 ! germ line stem cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0000079 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! male reproductive system [Term] id: CL:0000088 name: female germ line stem cell (sensu Nematoda and Protostomia) namespace: cell xref: FBbt:00004873 is_a: CL:0000022 ! female germ line stem cell is_a: CL:0000086 ! germ line stem cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0000474 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! female reproductive system [Term] id: CL:0000089 name: male germ line stem cell (sensu Vertebrata) namespace: cell is_a: CL:0000016 ! male germ line stem cell is_a: CL:0000085 ! germ line stem cell (sensu Vertebrata) [Term] id: CL:0000090 name: female germ line stem cell (sensu Vertebrata) namespace: cell is_a: CL:0000022 ! female germ line stem cell is_a: CL:0000085 ! germ line stem cell (sensu Vertebrata) [Term] id: CL:0000091 name: Kupffer cell namespace: cell def: "A tissue-resident macrophage of the reticuloendothelial system found on the luminal surface of the hepatic sinusoids involved in erythrocyte clearance. Markers include F4/80+, CD11b-low, CD68-positive, sialoadhesin-positive, CD163/SRCR-positive. Irregular, with long processes including lamellipodia extending into the sinusoid lumen, have flattened nucleus with cytoplasm containing characteristic invaginations of the plasma membrane (vermiform bodies); lie within the sinusoid lumen attached to the endothelial surface; derived from the bone marrow, form a major part of the body's mononuclear phagocyte system." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0517223651, MESH:A.11.329.372.588, PMID:15771589, PMID:17105582] comment: Markers: Mouse: F4/80+, CD11b-low, CD68+, sialoadhesin+, CD163/SRCR+; role or process: immune, antigen-presentation, clearance of senescent erythrocytes, iron metabolism. Kupffer cells are also reportedly C3aR-positive, CD14-low, CD54-positive, CD88-positive, and CD284-positive. They are also capable of producing IL-1, IL-6, TNF-alpha, nitric oxide, PGD2, PGE2, PGF2alpha, and TXA2. synonym: "hepatic macrophage" EXACT [] synonym: "littoral cell of hepatic sinusoid" EXACT [] synonym: "liver macrophage" EXACT [] synonym: "macrophagocytus stellatus" EXACT [] synonym: "stellate cell of von Kupffer" EXACT [] synonym: "von Kupffer cell" EXACT [] xref: BTO:0000685 xref: FMA:14656 is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0000092 name: osteoclast namespace: cell def: "A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. This cell has the following markers: tartrate-resistant acid phosphatase type 5-positive, PU.1-positive, c-fos-positive, nuclear factor NF-kappa-B p100 subunit-positive, tumor necrosis factor receptor superfamily member 11A-positive and macrophage colony-stimulating factor 1 receptor-positive." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149, PMID:10428500, PMID:15055519, PMID:17380158] comment: Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid. synonym: "chondroclast" RELATED [] xref: BTO:0000968 xref: FMA:66781 is_a: CL:0000766 ! myeloid leukocyte is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000576 ! monocyte [Term] id: CL:0000093 name: osteochondroclast namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Consider using 'osteoclast ; CL:0000092' instead. [Term] id: CL:0000094 name: granulocyte namespace: cell def: "A leukocyte with abundant granules in the cytoplasm." [GOC:amm, GOC:tfm, MESH:A.11.118.637.415] synonym: "granular leucocyte" EXACT [] synonym: "granular leukocyte" EXACT [] synonym: "polymorphonuclear leukocyte" EXACT [] xref: BTO:0000539 xref: BTO:0001026 xref: FMA:62854 is_a: CL:0000766 ! myeloid leukocyte [Term] id: CL:0000095 name: neuron associated cell namespace: cell is_a: CL:0002319 ! neural cell relationship: develops_from CL:0000133 ! neurectodermal cell [Term] id: CL:0000096 name: mature neutrophil namespace: cell def: "A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. They are produced in bone marrow at a rate of 5e10-10e10/ day and have a half-life of 6-8 hours. Neutrophils are CD15-positive, CD16-positive, CD32-positive, CD43-positive, CD181-positive, and CD182-positive .\"" [GOC:add, GOC:tfm, MESH:A.11.118.637.415.583, MESH:D009504, PMID:11138776, PMID:12560239, PMID:15514007, PMID:7880385, http://www.cap.org] comment: Neutrophils are also capable of secreting GRO-alpha, IL-1beta, IL-1ra, IL-3, IL-12, IP-10, MIG, MIP-1alpha, MIP-1beta, TGF-beta, TNF-alpha, VEGF, and anti-microbial peptides. They can positively influence the chemotaxis of basophils, T-cells, monocytes, macrophages, dendritic cells, and other neutrophils.nNeutrophils are also CD35-positive, CD64-positive, CD89-positive, CD184-positive, and fMLP receptor-positive Ly-6G-positive (mouse), TLR2-low, TLR4-low, and lineage-negative (CD2, CD3, CD5, CD9, CD19, CD36, CD49d, CD56, CD61, CD235a (glycophorin-A)). synonym: "PMN" EXACT [] synonym: "mature neutrocyte" EXACT [] synonym: "mature neutrophil leucocyte" EXACT [] synonym: "mature neutrophil leukocyte" EXACT [] synonym: "mature neutrophilic leucocyte" EXACT [] synonym: "mature neutrophilic leukocyte" EXACT [] synonym: "poly" BROAD [] synonym: "polymorphonuclear leucocyte" BROAD [] synonym: "polymorphonuclear leukocyte" BROAD [] synonym: "polymorphonuclear neutrophil" EXACT [] synonym: "polynuclear neutrophilic leucocyte" EXACT [] synonym: "polynuclear neutrophilic leukocyte" EXACT [] xref: BTO:0003473 is_a: CL:0000775 ! neutrophil relationship: develops_from CL:0000560 ! band form neutrophil [Term] id: CL:0000097 name: mast cell namespace: cell def: "A cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. Progenitors leave bone marrow and mature in connective and mucosal tissue. Mature mast cells are found in all tissues, except the bloodstream. Their phenotype is CD117-high, CD123-negative, CD193-positive, CD200R3-positive, and FceRI-high. Stem-cell factor (KIT-ligand; SCF) is the main controlling signal of their survival and development." [GOC:add, GOC:dsd, GOC:tfm, ISBN:068340007X, MESH:A.11.329.427, MESH:D008407, PMCID:PMC1312421, PMCID:PMC2855166, PMID:15153310, PMID:16455980, PMID:19671378, PMID:212366338, PMID:9354811] comment: Mast cells are generally integrin beta-7-negative and positive for TLR2, TLR3, TLR4, TLR5, TLR7, TLR9, C3aR, C5aR, CR3, CR4, VEGF, FGF2, and renin. They can express MHC Class I and II on their surface. Activated murine mast cells (IgE+Antigen) were capable of expressing the following co-stimulatory molecules: CD95 (Fas), CD120b, CD137 (4-1BB), CD153 (CD30L), CD154 (CD40L), GITR, ICOSL, OX40L, PD-L1, and PD-L2. Note that there was some mouse strain variation. Mast cells have also been demonstrated to produce bFGF, CCL2, CCL4, CCL5, CCL11, CCL20, CXCL2, CXCL8, CXCL10, GM-CSF, IFN-gamma, IL-1, IL-2, IL-3, IL-8, IL-10, IL-11, IL-12, IL-13, IL-16, IL-25, IL-18, MIP-1, prostaglandin D2, SCF, TGF-beta, TNF-alpha, TSLP, VEGF, and XCL1. They express the transcription factors Transcription factors AP-1, GATA1, MITF, Notch2, PIAS3, PU.1, and STAT5. synonym: "histaminocyte" EXACT [] synonym: "labrocyte" EXACT [ISBN:0721601464] synonym: "mastocyte" EXACT [ISBN:0721601464] synonym: "tissue basophil" RELATED [ISBN:068340007X] xref: BTO:0000830 xref: FMA:66784 is_a: CL:0000766 ! myeloid leukocyte is_a: CL:0002274 ! histamine secreting cell relationship: develops_from CL:0000831 ! mast cell progenitor [Term] id: CL:0000098 name: sensory epithelial cell namespace: cell def: "A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells." [GOC:tfm, ISBN:0517223651, ISBN:0721662544] comment: The term \"neuroepithelial cell\" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710). synonym: "neuroepithelial cell" BROAD [] xref: BTO:0004301 is_a: CL:0000066 ! epithelial cell is_a: CL:0000197 ! receptor cell is_a: CL:0002371 ! somatic cell is_a: CL:0000075 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! columnar/cuboidal epithelial cell relationship: develops_from CL:0000710 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neurecto-epithelial cell [Term] id: CL:0000099 name: interneuron namespace: cell def: "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions." [GOC:tfm, MESH:A.08.663.358] xref: BTO:0003811 xref: FBbt:00005125 xref: FMA:67313 xref: WBbt:0005113 is_a: CL:0000540 ! neuron [Term] id: CL:0000100 name: motor neuron namespace: cell def: "An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement." [MESH:A.08.663.655.500, PMID:16875686] synonym: "anterior horn cell" EXACT [] synonym: "motoneuron" EXACT [] xref: BTO:0000312 xref: FMA:83617 xref: WBbt:0005409 is_a: CL:0000527 ! efferent neuron [Term] id: CL:0000101 name: sensory neuron namespace: cell def: "Any neuron having a sensory function; an afferent neuron conveying sensory impulses." [ISBN:0721662544] xref: BTO:0001037 xref: FBbt:00005124 xref: FMA:84649 xref: WBbt:0005759 is_a: CL:0000526 ! afferent neuron relationship: part_of UBERON:0000004 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory apparatus [Term] id: CL:0000102 name: polymodal neuron namespace: cell is_a: CL:0000540 ! neuron [Term] id: CL:0000103 name: bipolar neuron namespace: cell def: "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body." [GOC:tfm, ISBN:0444009442] xref: FMA:67282 is_a: CL:0000063 ! cell by histology is_a: CL:0000099 ! interneuron relationship: part_of UBERON:0001791 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! inner nuclear layer of retina relationship: part_of UBERON:0003902 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! retinal neural layer [Term] id: CL:0000104 name: multipolar neuron namespace: cell def: "Neuron with an axon and two or more dendrites." [FMA:67287, GOC:tfm] xref: FMA:67287 is_a: CL:0000540 ! neuron [Term] id: CL:0000105 name: pseudounipolar neuron namespace: cell def: "Neuron with two neurites that are fused grossly when they protrude from the soma and bifurcate a short distance from the soma." [FMA:67305, GOC:tfm] xref: FMA:67305 is_a: CL:0000540 ! neuron [Term] id: CL:0000106 name: unipolar neuron namespace: cell def: "Neuron with an axon and no dendrites." [FMA:67278] xref: FMA:67278 is_a: CL:0000540 ! neuron [Term] id: CL:0000107 name: autonomic neuron namespace: cell def: "A neruon whose cell body is within an autonomic ganglion." [GOC:tfm] xref: FMA:80121 is_a: CL:0000540 ! neuron is_a: CL:0000029 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neuron neural crest derived relationship: part_of UBERON:0002410 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! autonomic nervous system [Term] id: CL:0000108 name: cholinergic neuron namespace: cell def: "A neuron that uses acetylcholine as a vesicular neurotransmitter." [GOC:tfm] xref: BTO:0004902 xref: FMA:84796 xref: WBbt:0006840 is_a: CL:0000107 ! autonomic neuron [Term] id: CL:0000109 name: adrenergic neuron namespace: cell is_a: CL:0000107 ! autonomic neuron [Term] id: CL:0000110 name: peptidergic neuron namespace: cell is_a: CL:0000107 ! autonomic neuron [Term] id: CL:0000111 name: peripheral neuron namespace: cell def: "A neuron that is part of nerve found outside the central nervous system." [ISBN:0721662544] xref: FMA:84664 is_a: CL:0000540 ! neuron is_a: CL:0000029 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neuron neural crest derived [Term] id: CL:0000112 name: columnar neuron namespace: cell synonym: "columnar neuron" RELATED [] is_a: CL:0000540 ! neuron [Term] id: CL:0000113 name: mononuclear phagocyte namespace: cell def: "A vertebrate phagocyte with a single nucleus." [GOC:add, GOC:tfm, ISBN:0781735149] xref: BTO:0001433 is_a: CL:0000518 ! phagocyte (sensu Vertebrata) is_a: CL:0000842 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mononuclear cell [Term] id: CL:0000114 name: surface ectodermal cell namespace: cell synonym: "cell of surface ectoderm" EXACT [] synonym: "surface ectoderm cell" EXACT [] xref: FMA:72552 is_a: CL:0000221 ! ectodermal cell [Term] id: CL:0000115 name: endothelial cell namespace: cell def: "An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm." [GOC:tfm, MESH:D042783, http://63.198.234.228/OpenFMA/Endothelial%20cell.html, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3364936&group_id=36855] comment: From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]. synonym: "endotheliocyte" EXACT [] xref: BTO:0001176 xref: FMA:66772 is_a: CL:0000213 ! lining cell is_a: CL:0002078 ! meso-epithelial cell relationship: part_of UBERON:0004852 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cardiovascular system endothelium [Term] id: CL:0000116 name: pioneer neuron namespace: cell def: "Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance." [GOC:cvs, GOC:tfm] xref: FBbt:00005128 is_a: CL:0000540 ! neuron relationship: part_of UBERON:0003050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory placode [Term] id: CL:0000117 name: CNS neuron (sensu Vertebrata) namespace: cell is_a: CL:0000540 ! neuron relationship: develops_from CL:0000337 ! neuroblast (sensu Vertebrata) [Term] id: CL:0000118 name: basket cell namespace: cell is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000119 name: Golgi cell namespace: cell is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000120 name: granule cell namespace: cell xref: BTO:0003393 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000121 name: Purkinje cell namespace: cell def: "The output neuron of the cerebellar cortex." [MESH:A.08.186.211.132.810.428.200.212.600] synonym: "Purkinje neuron" EXACT [] synonym: "Purkinje's cell" EXACT [] xref: BTO:0001011 xref: FMA:67969 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) is_a: CL:0000527 ! efferent neuron relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000122 name: stellate cell namespace: cell xref: BTO:0002316 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000123 name: neuron associated cell (sensu Vertebrata) namespace: cell is_a: CL:0000095 ! neuron associated cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0000124 name: glial cell (sensu Nematoda and Protostomia) namespace: cell xref: FBbt:00005144 is_a: CL:0000125 ! glial cell is_a: CL:0000340 ! glioblast (sensu Nematoda and Protostomia) relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! nervous system [Term] id: CL:0000125 name: glial cell namespace: cell def: "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [MESH:A.08.637] synonym: "neuroglia" RELATED [] synonym: "neuroglial cell" EXACT [] xref: BTO:0002606 xref: FMA:54536 is_a: CL:0000095 ! neuron associated cell relationship: develops_from CL:0000030 ! glioblast relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! nervous system [Term] id: CL:0000126 name: macroglial cell namespace: cell def: "A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together." [GOC:tfm, ISBN:0721662544] synonym: "macrogliocyte" EXACT [] xref: BTO:0000771 xref: FMA:54538 is_a: CL:0000243 ! glial cell (sensu Vertebrata) relationship: develops_from CL:0000339 ! glioblast (sensu Vertebrata) [Term] id: CL:0000127 name: astrocyte namespace: cell def: "A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury." [GOC:dsd, GOC:tfm, MESH:A.08.637.200, MESH:D001253, PMID:11746784, PMID:12162730, PMID:12898703, PMID:20942978] comment: Astrocytes are reportedly CD68-negative, CD121a-positive, CD184-positive, CD192-positive, CRF-positive, EGFR-positive, GFAP-positive, GLUT1-positive, MBP-negative, and NGFR-positive. synonym: "astrocytic glia" EXACT [] xref: BTO:0000099 xref: FMA:54537 is_a: CL:0000126 ! macroglial cell [Term] id: CL:0000128 name: oligodendrocyte namespace: cell def: "A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system." [MESH:A.08.637.600] synonym: "oligodendroglia" RELATED [] xref: BTO:0000962 xref: FMA:54540 is_a: CL:0000126 ! macroglial cell relationship: develops_from CL:0002453 ! oligodendrocyte precursor cell [Term] id: CL:0000129 name: microglial cell namespace: cell def: "A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, MESH:D017628, PMID:11517395, PMID:12430718, PMID:14561199, PMID:14612429, PMID:16177057, PMID:19461673, PMID:2089275] comment: Markers: Mouse: CD11b+, F4/80+, CD68+. They represent ~12% of the cells in the CNS, but they are not uniformly distributed within the CNS. A normal adult mouse brain has approximately 3.5x10e6 microglia. Microglia are also reportedly CD3-negative, CD4-positive, CD8-negative, CD11b-positive, CD19-negative, CD56-negative, CD163-negative, CD200R-positive, CD281-positive, CD282-positive, CD283-positive, CD284-positive, CD285-positive, CD286-positive, CD287-positive, CD288-positive, CD289-positive, Gr1-negative, nestin-positive, and PU.1-positive. synonym: "MF.microglia.CNS" RELATED [] synonym: "brain macrophage" BROAD [] synonym: "brain-resident macrophage" EXACT [] synonym: "hortega cells" EXACT [http://www.copewithcytokines.de/] synonym: "microglia" EXACT [] synonym: "microgliocyte" EXACT [http://www.copewithcytokines.de/] xref: BTO:0000078 xref: BTO:0000962 xref: FMA:54539 xref: FMA:54540 is_a: CL:0000243 ! glial cell (sensu Vertebrata) is_a: CL:0000878 ! central nervous system macrophage relationship: develops_from CL:0002453 ! oligodendrocyte precursor cell [Term] id: CL:0000130 name: neuron associated cell (sensu Nematoda and Protostomia) namespace: cell is_a: CL:0000095 ! neuron associated cell [Term] id: CL:0000131 name: gut endothelial cell namespace: cell is_a: CL:0000115 ! endothelial cell is_a: CL:0000075 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! columnar/cuboidal epithelial cell relationship: develops_from CL:0000223 ! endodermal cell relationship: part_of UBERON:0001555 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive tract [Term] id: CL:0000132 name: corneal endothelial cell namespace: cell def: "Cell of the single layer of large flattened cells covering the surface of the cornea." [GOC:tfm, MESH:A.09.371.060.067.31] xref: FMA:70614 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000710 ! neurecto-epithelial cell is_a: CL:0002371 ! somatic cell is_a: CL:0000115 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! endothelial cell relationship: develops_from CL:0000008 ! cranial neural crest cell relationship: part_of UBERON:0001985 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! corneal endothelium [Term] id: CL:0000133 name: neurectodermal cell namespace: cell def: "Ectoderm destined to be nervous tissue." [GOC:tfm, ISBN:068340007X] synonym: "neurectoderm cell" EXACT [] is_a: CL:0000221 ! ectodermal cell [Term] id: CL:0000134 name: mesenchymal cell namespace: cell alt_id: CL:0002452 def: "A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. This cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs." [FB:ma, GOC:dsd, PMCID:PMC2613570, PMID:10102814j, PMID:16923606, PMID:17986482, PMID:19960544, http://en.wikipedia.org/wiki/Mesenchymal_stem_cell, http://www.copewithcytokines.de/cope.cgi?key=mesenchymal%20stem%20cells] comment: Many but not all mesenchymal cells derive from the mesoderm. MSCs are reportedly CD3-negative, CD4-negative, CD5-negative, CD8-negative, CD11a-negative, CD11b-negative, CD14-negative, CD19-negative, CD29-positive, CD31-negative, CD34-negative, CD38-negative, CD40-negative, CD44-positive, CD45-negative, CD49-positive, CD54-positive, CD66b-negative, CD79a-negative, CD80-negative, CD102-positive, CD106-positive, CD117-positive, CD121a-positive, CD121b-positive, CD123-positive, CD124-positive, CD133-negative, CD146-positive, CD166-positive, CD271-positive, B220-negative, Gr1-negative, MHCI-positive, MHCII-negative, SSEA4-negative, sca1-positive, Ter119-negative, and glycophorin A-negative. Cultured MSCs are capable of producing stem cell factor, IL7, IL8, IL11, TGF-beta, cofilin, galectin-1, laminin-receptor 1, cyclophilin A, and MMP-2. synonym: "BMSC" EXACT [] synonym: "CFU-F" EXACT [] synonym: "MSC" EXACT [PMID:11378515] synonym: "bone marrow stromal cells" EXACT [] synonym: "colony-forming unit-fibroblast" EXACT [] synonym: "marrow stromal cells" EXACT [PMID:11378515] synonym: "mesenchymal precursor cell" EXACT [] synonym: "mesenchymal progenitor cells" EXACT [MESH:D044982] synonym: "mesenchymal stem cell" EXACT [] synonym: "mesenchymal stromal cell" EXACT [] synonym: "mesenchymal stromal cells" EXACT [] synonym: "stem cells, mesenchymal" EXACT [MESH:D044982] xref: BTO:0002625 xref: BTO:0003298 xref: FMA:70546 is_a: CL:0000048 ! multi fate stem cell is_a: CL:0000063 ! cell by histology is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000222 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesodermal cell [Term] id: CL:0000135 name: fibrocyte namespace: cell def: "An inactive fibroblast; cytoplasm is sparse, endoplasmic reticulum is scanty with flattened nucleus. Term used by some histologists; when fibroblasts become relatively inactive in fiber formation. However, this cell has the potential for fibrogenesis in quiescent connective tissue of the adult, as well as during development, other histologists prefer to use the term fibroblast in all circumstances. These cells represent ~0.5% of peripheral blood leukocytes." [GOC:dsd, GOC:tfm, ISBN:0412046911, ISBN:0517223651, PMID:11641248, PMID:15010326, PMID:17607298, PMID:18222966, PMID:8790603, PMID:9551999] comment: Cultured human fibrocytes are MHCI-positive, MHCII-positive, CD1a-negative, CD3-negative, CD4-negative, CD8-negative, CD10-negative, CD11b-positive, CD13-positive, CD14-negative, CD16-negative, CD18-positive, CD19-negative, CD25-negative, CD29-positive, CD32-positive, CD33-negative, CD34-positive, CD38-negative, CD40-positive, CD44-negative, CD45RO-positive, CD49a-positive, CD49b-positive, CD49c-negative, CD49d-negative, CD49e-positive, CD49f-negative, CD56-negative, CD58-positive, CD61-positive, CD64-positive, CD70-negative, CD71-positive, CD80-positive, CD83-negative, CD86-positive, CD103-negative, CD105-positive, CD181-positive, CD182-negative, CD183-positive, CD184-positive, CD185-negative, CD186-negative, CD191-positive, CD192-negative, CD193-positive, CD194-positive, CD195-positive, CD196-negative, CD197-positive, CD199-positive, desmin-negative, F4/80-positive, Gr1-positive, LSP-1-positive, MHCI-positive, MHCII-positive, alpha-SMA-negative, TCRab-negative, TCRgd-negative, and vimentin-positive. Fibrocytes are also capable of secreting angiogenin, bFGF, CCL2, CCL3, CCL4, CCL8, CXCL1, type I collagen, type III collagen, CTGF, fibronectin, GM-CSF, IL-1a, IL-6, IL-8, IL-10, M-CSF, MMP-9, PDGF-A, TGF-alpha, TGF-beta1, TNF-alpha, VEGF-A, and type I collagen. xref: FMA:63879 is_a: CL:0000499 ! stromal cell relationship: develops_from CL:0000057 ! fibroblast [Term] id: CL:0000136 name: fat cell namespace: cell alt_id: CL:0000450 def: "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:A.11.329.114] synonym: "adipocyte" EXACT [] synonym: "adipose cell" EXACT [] xref: BTO:0000443 xref: FMA:63880 is_a: CL:0000325 ! stuff accumulating cell is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000057 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! fibroblast relationship: part_of UBERON:0001013 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! adipose tissue [Term] id: CL:0000137 name: osteocyte namespace: cell def: "A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi." [GOC:tfm, MESH:A.11.329.629.500] synonym: "bone cell" BROAD [] xref: BTO:0002038 xref: FMA:66779 is_a: CL:0000054 ! bone matrix secreting cell is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000062 ! osteoblast [Term] id: CL:0000138 name: chondrocyte namespace: cell def: "Polymorphic cell that form cartilage." [MESH:A.11.329.171] synonym: "cartilage cell" EXACT [] xref: BTO:0000249 xref: FMA:66782 is_a: CL:0000153 ! GAG secreting cell is_a: CL:0000667 ! collagen secreting cell is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000058 ! chondroblast relationship: part_of UBERON:0002418 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cartilage tissue [Term] id: CL:0000139 name: amelocyte namespace: cell is_a: CL:0000053 ! enamel secreting cell is_a: CL:0000146 ! simple columnar epithelial cell relationship: develops_from CL:0000059 ! ameloblast [Term] id: CL:0000140 name: odontocyte namespace: cell is_a: CL:0000013 ! dentine secreting cell is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000060 ! odontoblast relationship: develops_from CL:0000134 ! mesenchymal cell [Term] id: CL:0000141 name: cementocyte namespace: cell def: "An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth." [ISBN:0781733901] xref: FMA:63003 is_a: CL:0000137 ! osteocyte relationship: develops_from CL:0000061 ! cementoblast relationship: part_of UBERON:0001091 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! calcareous tooth [Term] id: CL:0000142 name: hyalocyte namespace: cell def: "A cell occurring in the peripheral part of the vitreous body of the eye that may be responsible for production of hyaluronic acid and collagen." [GOC:tfm, PMID:19073178] synonym: "vitreous cell" RELATED [] xref: BTO:0004271 xref: FMA:70620 is_a: CL:0000499 ! stromal cell [Term] id: CL:0000143 name: guidepost cell namespace: cell is_a: CL:0000130 ! neuron associated cell (sensu Nematoda and Protostomia) [Term] id: CL:0000144 name: cell by function namespace: cell def: "A classification of cells by their primary end goal or behavior." [FB:ma] is_a: CL:0000012 ! cell by class [Term] id: CL:0000145 name: professional antigen presenting cell namespace: cell def: "A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response." [GOC:add, ISBN:0781735149] comment: Note change of name; nearly all somatic cells can present antigens to T cells via MHC Class I complexes leading to effector responses, but professional antigen presenting cells constitutively express MHC Class II as well as costimulatory molecules, and thus can initiate immune responses via T cells. synonym: "APC" BROAD [] is_a: CL:0000473 ! defensive cell is_a: CL:0000738 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! leukocyte [Term] id: CL:0000146 name: simple columnar epithelial cell namespace: cell is_a: CL:0000075 ! columnar/cuboidal epithelial cell [Term] id: CL:0000147 name: pigment cell namespace: cell def: "A pigment cell is a cell that contains pigment granules." [GOC:tfm] synonym: "chromatocyte" EXACT [] synonym: "chromatophore" EXACT [] is_a: CL:0000325 ! stuff accumulating cell relationship: develops_from UBERON:0003083 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! trunk neural crest relationship: part_of UBERON:0002097 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! skin of body [Term] id: CL:0000148 name: melanocyte namespace: cell alt_id: CL:0000572 def: "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl] synonym: "melanophore" NARROW [] xref: BTO:0000847 xref: FMA:70545 is_a: CL:0000147 ! pigment cell is_a: CL:0000710 ! neurecto-epithelial cell relationship: develops_from CL:0000541 ! melanoblast relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument [Term] id: CL:0000149 name: visual pigment cell namespace: cell synonym: "pigment cell" BROAD [] is_a: CL:0000147 ! pigment cell [Term] id: CL:0000150 name: glandular epithelial cell namespace: cell def: "A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules." [GOC:tfm] xref: FMA:86494 is_a: CL:0000066 ! epithelial cell is_a: CL:0000151 ! secretory cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000151 name: secretory cell namespace: cell def: "A cell that specializes in controlled release of one or more substances." [GOC:tfm, ISBN:0721662544] xref: BTO:0003659 xref: FMA:86916 is_a: CL:0000144 ! cell by function [Term] id: CL:0000152 name: exocrine cell namespace: cell def: "A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct." [ISBN:0198547684] xref: FMA:16014 is_a: CL:0000151 ! secretory cell [Term] id: CL:0000153 name: GAG secreting cell namespace: cell def: "A cell that secretes glycosaminoglycans." [GOC:tfm] synonym: "hyaluronic acid secreting cell" EXACT [] is_a: CL:0000327 ! extracellular matrix secreting cell is_a: CL:0000447 ! carbohydrate secreting cell [Term] id: CL:0000154 name: protein secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000155 name: peptic cell namespace: cell def: "A cell that is usually basal in position, cuboidal with round nucleus, short microvilli, secretes pepsinogen." [GOC:tfm] synonym: "chief cell of stomach" EXACT [] synonym: "gastric chief cell" EXACT [] synonym: "pepsinogen secreting cell" EXACT [] synonym: "zymogenic cell" EXACT [] xref: FMA:62902 is_a: CL:0000154 ! protein secreting cell is_a: CL:0002178 ! epithelial cell of stomach is_a: CL:0002659 ! glandular cell of stomach [Term] id: CL:0000156 name: antibody secreting cell namespace: cell def: "OBSOLETE: A cell of the lymphoid series that can react with antigen to produce specific cell products called antibodies. Various cell subpopulations, often B cells, can be defined, based on the different classes of immunoglobulins that they synthesize." [] is_obsolete: true comment: Consider using 'B cell ; CL:0000236' or one of its children instead. [Term] id: CL:0000157 name: surfactant secreting cell namespace: cell def: "A cell that specializes in secretion of surfactant in the alveoli of the lung." [GOC:tfm, ISBN:0721662544] is_a: CL:0000151 ! secretory cell [Term] id: CL:0000158 name: Clara cell namespace: cell def: "Epithelial progenitor cell of the lung. Clara cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Clara cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium." [GOC:tfm, PMID:12107102, PMID:7905712] synonym: "Clara cell of bronchiole" EXACT [] synonym: "bronchiolar non-ciliated " EXACT [] xref: BTO:0004811 xref: FMA:14119 is_a: CL:0002328 ! bronchial epithelial cell [Term] id: CL:0000159 name: seromucus secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000160 name: goblet cell namespace: cell def: "A cell of the epithelial lining that produce and secrete mucins." [MESH:A.03.492.411.369.320] synonym: "chalice cell" EXACT [] xref: BTO:0001540 xref: FMA:13148 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000319 ! mucus secreting cell relationship: part_of UBERON:0001277 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! intestinal epithelium [Term] id: CL:0000161 name: acid secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000162 name: parietal cell namespace: cell def: "A large, oval stomach epithelial cell with a central nucleus; source of gastric acid. Secretes HCl." [GOC:tfm, ISBN:0517223651] synonym: "oxyntic cell" EXACT [] xref: BTO:0001780 xref: FMA:62901 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000161 ! acid secreting cell is_a: CL:0002178 ! epithelial cell of stomach [Term] id: CL:0000163 name: endocrine cell namespace: cell def: "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions." [MESH:A.06.407] synonym: "endocrinocyte" EXACT [] xref: FMA:83809 is_a: CL:0000151 ! secretory cell relationship: part_of UBERON:0000949 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! endocrine system relationship: part_of UBERON:0000949 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endocrine system [Term] id: CL:0000164 name: enteroendocrine cell namespace: cell def: "An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas." [GOC:tfm, SANBI:mhl] xref: BTO:0003865 xref: FMA:62930 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000165 name: neuroendocrine cell namespace: cell def: "An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals." [MESH:A.06.688] synonym: "neurosecretory cell" EXACT [] xref: BTO:0002691 xref: FMA:83810 is_a: CL:0000163 ! endocrine cell is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0000166 name: chromaffin cell namespace: cell def: "A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system." [MESH:A.06.224.161] synonym: "phaeochromocyte" EXACT [] xref: BTO:0000259 xref: FMA:69263 is_a: CL:0000568 ! APUD cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0000167 name: peptide hormone secreting cell namespace: cell is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000168 name: insulin secreting cell namespace: cell xref: BTO:0000783 is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000169 name: type B pancreatic cell namespace: cell def: "A cell that secretes insulin and is located towards the center of the islets of Langerhans." [GOC:tfm, ISBN:0517223651] comment: Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression. synonym: "B-cell of pancreatic islet" EXACT [FMA:70586] synonym: "beta cell islet" RELATED [MA:0002419] synonym: "beta cell of pancreatic islet" EXACT [FMA:70586] synonym: "insulin-secreting cell" EXACT [FMA:70586] synonym: "pancreatic B cell" EXACT [] synonym: "pancreatic B-cell" EXACT [FMA:70586] synonym: "pancreatic beta cell" EXACT [FMA:70586] synonym: "pancreatic islet core" EXACT [MA:0002419] synonym: "type B enteroendocrine cell" EXACT [FMA:70586] xref: BTO:0000783 xref: FMA:70586 xref: MA:0002419 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000168 ! insulin secreting cell relationship: develops_from CL:0002351 ! progenitor cell of endocrine pancreas relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive system [Term] id: CL:0000170 name: glucagon secreting cell namespace: cell def: "A cell that secretes glucagon." [GOC:tfm] synonym: "glucagon-secreting cell" EXACT [] xref: FMA:84045 is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000171 name: pancreatic A cell namespace: cell def: "A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon." [GOC:tfm, ISBN:0721662544] synonym: "pancreatic alpha cell" EXACT [] xref: BTO:0000990 xref: FMA:70585 is_a: CL:0002067 ! type A enterocrine cell relationship: develops_from CL:0002351 ! progenitor cell of endocrine pancreas relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive system [Term] id: CL:0000172 name: somatostatin secreting cell namespace: cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000173 name: pancreatic D cell namespace: cell def: "A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin." [FMA:0517223651, GOC:tfm] synonym: "D-cell of pancreatic islet" EXACT [] synonym: "delta cell of islet" EXACT [] synonym: "delta cell of pancreatic islet" EXACT [] synonym: "pancreatic D-cell" EXACT [] synonym: "pancreatic delta cell" EXACT [] synonym: "somatostatin-secreting pancreatic cell" EXACT [] xref: BTO:0000803 xref: FMA:70587 is_a: CL:0000502 ! type D enteroendocrine cell relationship: develops_from CL:0002351 ! progenitor cell of endocrine pancreas [Term] id: CL:0000174 name: steroid hormone secreting cell namespace: cell is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000175 name: luteal cell namespace: cell def: "A progesterone secreting cell in the corpus luteum. The large luteal cells develop from the granulosa cells. The small luteal cells develop from the theca cells." [MESH:A.05.360.319.114.630.278.400] synonym: "lutein cell" EXACT [] xref: BTO:0003939 xref: FMA:18688 is_a: CL:0000174 ! steroid hormone secreting cell is_a: CL:0002132 ! stromal cell of ovary [Term] id: CL:0000176 name: ecdysteroid secreting cell namespace: cell is_a: CL:0000174 ! steroid hormone secreting cell [Term] id: CL:0000177 name: testosterone secreting cell namespace: cell is_a: CL:0000174 ! steroid hormone secreting cell [Term] id: CL:0000178 name: Leydig cell namespace: cell def: "A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis." [GOC:tfm, PMID:12050120] synonym: "interstitial cell" EXACT [] xref: BTO:0000755 xref: EMAPA:29655 xref: FMA:72297 xref: FMA:86571 is_a: CL:0000177 ! testosterone secreting cell [Term] id: CL:0000179 name: progesterone secreting cell namespace: cell is_a: CL:0000174 ! steroid hormone secreting cell [Term] id: CL:0000180 name: estradiol secreting cell namespace: cell is_a: CL:0000174 ! steroid hormone secreting cell [Term] id: CL:0000181 name: metabolising cell namespace: cell def: "A cell whose primary function is intermediary metabolism." [FB:ma] is_a: CL:0000144 ! cell by function [Term] id: CL:0000182 name: hepatocyte namespace: cell def: "The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated." [GOC:tfm, ISBN:0412046911, MESH:A.11.436.348, PMID:19717280] xref: BTO:0000575 xref: FMA:14515 is_a: CL:0000066 ! epithelial cell is_a: CL:0000181 ! metabolising cell is_a: CL:0000417 ! endopolyploid cell is_a: CL:0000668 ! parenchymal cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000223 ! endodermal cell [Term] id: CL:0000183 name: contractile cell namespace: cell def: "A cell whose primary function is to shorten." [FB:ma] is_a: CL:0000144 ! cell by function [Term] id: CL:0000185 name: myoepithelial cell namespace: cell def: "Contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament." [GOC:tfm, ISBN:0721662544] synonym: "basket epithelial cell" EXACT [] synonym: "myoepitheliocyte" EXACT [] xref: BTO:0002309 xref: FMA:67799 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0000183 ! contractile cell is_a: CL:0000548 ! animal cell relationship: develops_from CL:0000222 ! mesodermal cell [Term] id: CL:0000186 name: myofibroblast cell namespace: cell def: "An animal cell that has characteristics of both a fibroblast cell and a smooth muscle cell." [GOC:dsd, GOC:tfm, MESH:D058628, PMID:19800625, PMID:20630469] comment: Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha. synonym: "MFB" EXACT [PMID:8731193] is_a: CL:0000183 ! contractile cell is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000187 name: muscle cell namespace: cell def: "A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620] synonym: "myocyte" EXACT [] xref: BTO:0000888 xref: BTO:0000902 xref: FBbt:00005074 xref: FMA:67328 xref: WBbt:0003675 is_a: CL:0000183 ! contractile cell is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000056 ! myoblast relationship: part_of UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle organ [Term] id: CL:0000188 name: skeletal muscle cell namespace: cell def: "A somatic cell located in skeletal muscle." [GOC:tfm] xref: BTO:0004392 xref: FMA:9727 is_a: CL:0000187 ! muscle cell relationship: develops_from CL:0000515 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! skeletal muscle myoblast [Term] id: CL:0000189 name: slow muscle cell namespace: cell def: "A muscle cell that develops tension more slowly than a fast-twitch fiber." [GOC:tfm, ISBN:0323052908] synonym: "slow muscle fiber" EXACT [ISBN:0815316208] xref: FMA:84448 is_a: CL:0002372 ! myotube relationship: develops_from CL:0000857 ! slow muscle myoblast [Term] id: CL:0000190 name: fast muscle cell namespace: cell def: "A muscle cell that can develop high tension rapidly. It is usually innervated by a single alpha neuron ." [GOC:tfm, ISBN:0323052908] synonym: "glycolytic muscle fiber" EXACT [] is_a: CL:0002372 ! myotube relationship: develops_from CL:0000858 ! fast muscle myoblast [Term] id: CL:0000192 name: smooth muscle cell namespace: cell alt_id: CL:0000191 def: "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361] synonym: "SMCs" EXACT [PMID:9315361] synonym: "myocytes, smooth muscle" EXACT [MESH:D032389] synonym: "non-striated muscle cell" EXACT [] synonym: "smooth muscle fiber" EXACT [] xref: BTO:0004576 xref: FMA:14072 is_a: CL:0000187 ! muscle cell relationship: develops_from CL:0000514 ! smooth muscle myoblast relationship: part_of UBERON:0001135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! smooth muscle tissue [Term] id: CL:0000193 name: cardiac muscle cell (sensu Arthopoda) namespace: cell alt_id: CL:0000466 def: "A striated muscle cell found in the heart. They develop from cardiac myoblasts." [MESH:A.11.620.500] is_a: CL:0000228 ! multinucleate cell is_a: CL:0000746 ! cardiac muscle cell relationship: develops_from CL:0000465 ! cardioblast (sensu Arthropoda) [Term] id: CL:0000194 name: nodal cardiac cell namespace: cell is_obsolete: true comment: Consider CL:0002072. [Term] id: CL:0000195 name: Purkinje fiber namespace: cell is_obsolete: true [Term] id: CL:0000196 name: flight muscle cell namespace: cell is_a: CL:0000187 ! muscle cell is_a: CL:0000228 ! multinucleate cell [Term] id: CL:0000197 name: receptor cell namespace: cell is_a: CL:0000144 ! cell by function [Term] id: CL:0000198 name: pain receptor cell namespace: cell def: "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings." [MESH:A.08.800.550.700.650] synonym: "nociceptor" EXACT [] synonym: "nocireceptor" EXACT [] is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:0000199 name: mechanoreceptor cell namespace: cell def: "A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [MESH:A.08.800.550.700.500] is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:0000200 name: touch receptor cell namespace: cell is_a: CL:0000199 ! mechanoreceptor cell [Term] id: CL:0000202 name: auditory hair cell namespace: cell alt_id: CL:0000201 def: "A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [MESH:A.08.663.650.250] comment: In mammals these cells are located in the organ of Corti. synonym: "auditory receptor cell" EXACT [] synonym: "cochlear hair cell" EXACT [] xref: FMA:62364 is_a: CL:0002374 ! ear hair cell is_a: CL:0002491 ! auditory epithelial cell relationship: part_of UBERON:0001846 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! internal ear [Term] id: CL:0000203 name: gravity sensitive cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:0000204 name: acceleration receptive cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:0000205 name: thermoreceptor cell namespace: cell def: "A cellular receptor which mediates the sense of temperature. Thermoreceptor cells in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain." [GOC:tfm, MESH:A.08.800.550.700.840, MP:0000971] is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:0000206 name: chemoreceptor cell namespace: cell def: "A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." [MESH:A.08.800.550.700.120] is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:0000207 name: olfactory receptor cell namespace: cell synonym: "Schultze's cell" EXACT [] synonym: "olfactory receptor neuron" EXACT [] synonym: "olfactory sensory neuron" EXACT [] xref: BTO:0004185 xref: FMA:67860 is_a: CL:0000206 ! chemoreceptor cell relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory system [Term] id: CL:0000208 name: pH receptor cell namespace: cell is_a: CL:0000206 ! chemoreceptor cell [Term] id: CL:0000209 name: taste receptor cell namespace: cell def: "A cell type found in the spherical or ovoid clusters of receptor cells found mainly in the epithelium of the tongue and constituting the end organs of the sense of taste." [GOC:tfm, ISBN:0618947256] synonym: "taste bud cell" EXACT [] xref: FMA:67910 is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0000206 ! chemoreceptor cell is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0000210 name: photoreceptor cell namespace: cell def: "A cell specialized to detect and transduce light." [MESH:A.08.663.650.650] xref: BTO:0001060 xref: FBbt:00004211 xref: FMA:86740 is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) is_a: CL:0000101 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! sensory neuron [Term] id: CL:0000211 name: electrically active cell namespace: cell def: "A cell whose function is determined by the generation or the reception of an electric signal." [FB:ma] is_a: CL:0000144 ! cell by function [Term] id: CL:0000212 name: absorptive cell namespace: cell def: "A cell that takes up and metabolizes substances." [CL:CVS] is_a: CL:0000144 ! cell by function [Term] id: CL:0000213 name: lining cell namespace: cell def: "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb] synonym: "boundary cell" EXACT [] is_a: CL:0000215 ! barrier cell [Term] id: CL:0000214 name: synovial cell namespace: cell def: "A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid." [GOC:tfm, ISBN:0721662544, PMID:17942474] synonym: "hyaluronic acid secreting cell" EXACT [] synonym: "synoviocyte" EXACT [] xref: BTO:0003652 xref: FMA:66786 is_a: CL:0000153 ! GAG secreting cell is_a: CL:0000213 ! lining cell is_a: CL:0002078 ! meso-epithelial cell relationship: develops_from CL:0000134 ! mesenchymal cell [Term] id: CL:0000215 name: barrier cell namespace: cell def: "A cell whose primary function is to prevent the transport of stuff across compartments." [JB:jb] is_a: CL:0000144 ! cell by function [Term] id: CL:0000216 name: Sertoli cell namespace: cell def: "A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier." [MESH:A.05.360.444.849.789] xref: BTO:0001238 xref: FMA:72298 is_a: CL:0000215 ! barrier cell is_a: CL:0000511 ! androgen binding protein secreting cell is_a: CL:0000630 ! supportive cell is_a: CL:0002625 ! seminiferous tubule epithelial cell [Term] id: CL:0000217 name: insulating cell namespace: cell is_a: CL:0000215 ! barrier cell [Term] id: CL:0000218 name: myelinating Schwann cell namespace: cell def: "A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons." [GOC:cvs, GOC:tfm, MESH:A.08.637.800] synonym: "Schwann cell" BROAD [] synonym: "neurilemmal cell" EXACT [] synonym: "peripheral neuroglial cell" BROAD [] xref: FMA:62121 is_a: CL:0000217 ! insulating cell is_a: CL:0000328 ! myelin accumulating cell is_a: CL:0002573 ! Schwann cell relationship: develops_from CL:0002377 ! immature Schwann cell [Term] id: CL:0000219 name: motile cell namespace: cell def: "A cell that moves by its own activities." [FB:ma] is_a: CL:0000144 ! cell by function [Term] id: CL:0000220 name: cell by lineage namespace: cell is_a: CL:0000012 ! cell by class [Term] id: CL:0000221 name: ectodermal cell namespace: cell def: "A cell of the outer of the three germ layers of the embryo." [MESH:A.16.254.425.273] synonym: "ectoderm cell" EXACT [] xref: FMA:72549 is_a: CL:0000220 ! cell by lineage is_a: CL:0002321 ! embryonic cell relationship: part_of UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! ectoderm relationship: part_of UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ectoderm [Term] id: CL:0000222 name: mesodermal cell namespace: cell def: "A cell of the middle germ layer of the embryo." [MESH:A.16.254.425.660] synonym: "mesoblast" EXACT [] synonym: "mesoderm cell" EXACT [] xref: FMA:72554 is_a: CL:0000220 ! cell by lineage is_a: CL:0002321 ! embryonic cell relationship: part_of UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesoderm relationship: part_of UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! mesoderm [Term] id: CL:0000223 name: endodermal cell namespace: cell def: "A cell of the inner of the three germ layers of the embryo." [MESH:A.16.254.425.407] synonym: "endoderm cell" EXACT [] xref: FMA:72555 is_a: CL:0000220 ! cell by lineage is_a: CL:0002321 ! embryonic cell relationship: part_of UBERON:0000925 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! endoderm relationship: part_of UBERON:0000925 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endoderm [Term] id: CL:0000224 name: cell by nuclear number namespace: cell def: "A classification of cells by the number of their nuclei." [FB:ma, GOC:tfm] is_a: CL:0000012 ! cell by class [Term] id: CL:0000225 name: anucleate cell namespace: cell def: "A cell that lacks a nucleus." [FB:ma] synonym: "non-nucleated cell" EXACT [] xref: FMA:68647 is_a: CL:0000224 ! cell by nuclear number [Term] id: CL:0000226 name: single nucleate cell namespace: cell def: "A cell with a single nucleus." [FB:ma, GOC:tfm] is_a: CL:0002242 ! nucleate cell [Term] id: CL:0000227 name: binucleate cell namespace: cell is_a: CL:0000228 ! multinucleate cell [Term] id: CL:0000228 name: multinucleate cell namespace: cell def: "A cell with more than one nucleus." [FB:ma] synonym: "syncitium" EXACT [] synonym: "syncytial cell" EXACT [] synonym: "syncytium" EXACT [] xref: WBbt:0008074 is_a: CL:0002242 ! nucleate cell [Term] id: CL:0000229 name: lymphoblast namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Refers to an activated mature lymphocyte phenotype rather than a distinct cell type; consider using 'lymphocyte ; CL:0000542' or one of its children instead. [Term] id: CL:0000230 name: T lymphoblast namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Refers to an activated mature T lymphocyte phenotype rather than a distinct cell type; consider using 'T cell ; CL:0000084' or one of its children instead. [Term] id: CL:0000231 name: B lymphoblast namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Refers to an activated mature B lymphocyte phenotype rather than a distinct cell type; consider using 'B cell ; CL:0000236' or one of its children instead. [Term] id: CL:0000232 name: erythrocyte namespace: cell def: "A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen." [GOC:tfm, MESH:A.11.118.290] synonym: "RBC" EXACT [] synonym: "red blood cell" EXACT [] xref: BTO:0000424 xref: FMA:81100 is_a: CL:0000764 ! erythroid lineage cell relationship: develops_from CL:0000558 ! reticulocyte [Term] id: CL:0000233 name: platelet namespace: cell def: "A non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation." [GOC:add, GOC:dsd, GOC:tfm, MESH:A.11.118.188, MESH:D001792, PMID:11110672, PMID:16987572, PMID:17204662, PMID:17479180, PMID:20414831] comment: Platelets are reportedly CCR1-positive, CCR2-negative, CCR3-positive, CCR4-positive, CCR5-negative, CCR6-negative, CCR7-negative, CCR8-negative, CCR9-negative, CCR10-negative, CD16-positive, CD23-positive, CD32-positive, CD40-positive, CD41-positive CD42-positive, CD61-positive, CD62P-positive, CD64-positive, CD89-positive, CD102-positive, CD147-positive (activated platelets), CD154-positive (activated platelets), CD162-positive, CD209, CD282-positive, CD284-positive, CD289-positive, CD181-negative, CD182-negative, CD183-negative, CD184-positive, CLEC2-positive, GPVI-positive, JAMC-positive, PAR1-positive, PAR2-negative, PAR3-positive, PAR4-positive, TSP1-positive, and TXA2R-positive. Platelets can reportedly produce CCL2, CCL3, CCL5, CCL7, CCL17, CD40L, CXCL1, CXCL4, CXCL4L1, CXCL5, CXCL7, CXCL8, CXCL12, EGF, factor V, factor VII, factor XI, factor XIII, bFGF, histamine, IGF-1, IL-1beta, PAI-1, PDGF, plasminogen, protein S, serotonin, TGF-beta, TFPI, VEGF, and vWF. synonym: "anucleate thrombocyte" EXACT [] synonym: "blood platelet" EXACT [] synonym: "enucleate thrombocyte" EXACT [] xref: BTO:0000132 xref: FMA:62851 is_a: CL:0000458 ! serotonin secreting cell is_a: CL:0000763 ! myeloid cell relationship: develops_from CL:0000556 ! megakaryocyte [Term] id: CL:0000234 name: phagocyte namespace: cell def: "Any cell capable of ingesting particulate matter via phagocytosis." [GOC:add, ISBN:0721601464] xref: BTO:0001044 xref: FMA:83806 is_a: CL:0000219 ! motile cell is_a: CL:0000325 ! stuff accumulating cell is_a: CL:0000473 ! defensive cell [Term] id: CL:0000235 name: macrophage namespace: cell def: "A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GOC:add, GOC:tfm, GO_REF:0000031, PMID:16213494, PMID:1919437, http://www.clt.astate.edu/wwilliam/] comment: Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid. synonym: "histiocyte" EXACT [] xref: BTO:0000801 xref: FMA:63261 xref: FMA:83585 is_a: CL:0000766 ! myeloid leukocyte is_a: CL:0000113 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mononuclear phagocyte is_a: CL:0000145 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! professional antigen presenting cell relationship: develops_from CL:0000576 ! monocyte relationship: part_of UBERON:0002405 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! immune system [Term] id: CL:0000236 name: B cell namespace: cell def: "A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149] synonym: "B lymphocyte" EXACT [] synonym: "B-cell" EXACT [] synonym: "B-lymphocyte" EXACT [] xref: BTO:0000776 xref: FMA:62869 is_a: CL:0000945 ! lymphocyte of B lineage relationship: develops_from CL:0000826 ! pro-B cell [Term] id: CL:0000237 name: keratinizing barrier epithelial cell namespace: cell is_a: CL:0000240 ! stratified squamous epithelial cell is_a: CL:0000311 ! keratin accumulating cell relationship: develops_from CL:0000114 ! surface ectodermal cell [Term] id: CL:0000238 name: non keratinizing barrier epithelial cell namespace: cell is_a: CL:0000240 ! stratified squamous epithelial cell [Term] id: CL:0000239 name: brush border epithelial cell namespace: cell is_a: CL:0000075 ! columnar/cuboidal epithelial cell [Term] id: CL:0000240 name: stratified squamous epithelial cell namespace: cell is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000079 ! stratified epithelial cell [Term] id: CL:0000241 name: stratified cuboidal epithelial cell namespace: cell is_a: CL:0000079 ! stratified epithelial cell [Term] id: CL:0000242 name: Merkel cell namespace: cell def: "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [MESH:A.08.800.550.700.500.425] synonym: "Merkel's cell" EXACT [] xref: FMA:70548 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) is_a: CL:0000312 ! keratinocyte [Term] id: CL:0000243 name: glial cell (sensu Vertebrata) namespace: cell def: "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear." [MESH:A.08.637] is_a: CL:0000125 ! glial cell relationship: develops_from CL:0000339 ! glioblast (sensu Vertebrata) [Term] id: CL:0000244 name: transitional epithelial cell namespace: cell def: "A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium." [GOC:tfm, ISBN:0721662544] xref: FMA:66778 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000245 name: passage cell namespace: cell def: "Obsolete. Use PO:0000353 from Plant Ontology instead. Cell in exodermis or endodermis that remains thin walled when the associated cells develop thick secondary walls. Has casparian strip in endodermis." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000353 [Term] id: CL:0000246 name: Mauthner neuron namespace: cell is_a: CL:0000099 ! interneuron is_a: CL:0000402 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! CNS interneuron relationship: part_of UBERON:0001896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! medulla oblongata relationship: part_of UBERON:0005511 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 4 [Term] id: CL:0000247 name: Rohon-Beard neuron namespace: cell is_a: CL:0000531 ! primary sensory neuron relationship: part_of UBERON:0003075 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! neural plate [Term] id: CL:0000248 name: microsporocyte namespace: cell def: "Obsolete. Use PO:0020047 from Plant Ontology instead. A diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0020047 synonym: "pollen mother cell" EXACT [] synonym: "primary sporogenous cell" EXACT [] [Term] id: CL:0000249 name: hatching gland cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000250 name: megaspore namespace: cell def: "Obsolete. Use PO:0020019 from Plant Ontology instead. A haploid (1n) spore developing into a female gametophyte in heterosporous plants." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0020019 [Term] id: CL:0000251 name: extramedullary cell namespace: cell is_a: CL:0000101 ! sensory neuron [Term] id: CL:0000252 name: microspore namespace: cell def: "Obsolete. Use PO:0020048 from Plant Ontology instead. A haploid (1n) spore developing into a male gametophyte in heterosporous plants; the uninucleate pollen grain in seed plants." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0020048 [Term] id: CL:0000253 name: eurydendroid cell namespace: cell is_a: CL:0000527 ! efferent neuron relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000254 name: egg cell namespace: cell def: "Obsolete. Use PO:0020094 from Plant Ontology instead. The female gamete of plants." [TAIR:lr] is_obsolete: true comment: replaced_by: PO:0020094 synonym: "female gametophyte egg cell" EXACT [] [Term] id: CL:0000255 name: eukaryotic cell namespace: cell is_a: CL:0000004 ! cell by organism [Term] id: CL:0000256 name: uric acid accumulating cell namespace: cell is_a: CL:0000325 ! stuff accumulating cell [Term] id: CL:0000257 name: Mycetozoan cell namespace: cell is_a: CL:0000255 ! eukaryotic cell [Term] id: CL:0000258 name: fiber tracheid namespace: cell def: "Obsolete. Use PO:0000355 from Plant Ontology instead. A fiber like tracheid in the secondary xylem; commonly thick walled, with pointed ends and bordered pits that have lenticular to slit like apertures." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000355 [Term] id: CL:0000259 name: aggregate cell namespace: cell def: "Differentiating cell composing the aggregate that has acquired adhesive properties." [DictyBase:DDB] is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) [Term] id: CL:0000260 name: mucilage cell namespace: cell def: "Obsolete. Use PO:0000373 from Plant Ontology instead. Cell containing mucilages or gums or similar carbohydrate material characterized by the property of swelling in water." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000373 [Term] id: CL:0000261 name: anterior cell namespace: cell is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) [Term] id: CL:0000262 name: guard mother cell namespace: cell def: "Obsolete. Use PO:0000351 from Plant Ontology instead. An epidermal cell that divides to produce the guard cells." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000351 [Term] id: CL:0000263 name: vegetative cell (sensu Mycetozoa) namespace: cell def: "Unicellular haploid myxamoebae that feeds on bacteria and divides by binary fission." [DictyBase:DDB] synonym: "amoeba" EXACT [] is_a: CL:0000257 ! Mycetozoan cell [Term] id: CL:0000264 name: phloem initial namespace: cell def: "Obsolete. Use PO:0000400 from Plant Ontology instead. A cambial cell on the phloem side of the cambial zone that is the source of one or more cells arising by periclinal divisions and differentiating into phloem elements with or without additional divisions in various planes." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000400 synonym: "phloem mother cell" EXACT [] [Term] id: CL:0000265 name: anterior like cell namespace: cell def: "Cell that has properties of anterior cells (for e.g., accumulate vital dyes in autophagic vesicles) but that is are scattered throughout the rear of the slug. Some but not all these cells express the ecmA gene and/or the ecmB gene. ALCs maintain an amoeboid appearance during culmination. ALCs that express the ecmO promoter have been called pstO/ALC." [DictyBase:DDB] synonym: "ALC" EXACT [] is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) [Term] id: CL:0000266 name: meristemoid namespace: cell def: "Obsolete. Use PO:0004011 from Plant Ontology instead. A cell constituting an active locus of meristematic activity in a tissue composed of somewhat older, differentiating cells." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0004011 [Term] id: CL:0000267 name: prespore cell namespace: cell def: "Cell that is undergoing differentiation to become a spore." [DictyBase:DDB] is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) [Term] id: CL:0000268 name: sieve element namespace: cell def: "Obsolete. Consult Plant Ontology instead. The cell in the phloem tissue concerned with mainly longitudinal conduction of food materials. Classified into sieve cell and sieve tube member." [ISBN:0471245208] is_obsolete: true [Term] id: CL:0000269 name: prestalk cell namespace: cell is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) [Term] id: CL:0000270 name: subsidiary cell namespace: cell def: "Obsolete. Use PO:0000284 from Plant Ontology instead. An epidermal cell associated with a stoma and at least morphologically distinguishable from the epidermal cells composing the groundmass of the tissue." [ISBN:047124520] is_obsolete: true comment: replaced_by: PO:0000284 [Term] id: CL:0000271 name: prestalk A cell namespace: cell def: "Cell expressing the ecmA marker from a promoter region that is proximal to the ATG (ecmAO promoter). They are located at the anterior-most region of the slug. During culmination pstA cells differentiate into pstAB cells." [DictyBase:DDB] synonym: "pstA" EXACT [] synonym: "pstAO" EXACT [] is_a: CL:0000269 ! prestalk cell [Term] id: CL:0000272 name: cambial initial namespace: cell def: "OBSOLETE, use term from Plant Ontology. A cell localized in the vascular cambium or phellogen. Its periclinal division can contribute cells either to the outside or to the inside of the axis; in vascular cambium, classified into fusiform initials (source of axial cells of xylem and phloem) and ray initials (source of the ray cells)." [ISBN:0471245208] is_obsolete: true comment: replaced_by PO:0000295 [Term] id: CL:0000273 name: prestalk AB cell namespace: cell def: "Cell that expresses both ecmA and ecmB either simultaneously or sequentially. During culmination pstA differentiate into pstAB cells." [DictyBase:DDB] synonym: "pstAB" EXACT [] is_a: CL:0000269 ! prestalk cell [Term] id: CL:0000275 name: prestalk B cell namespace: cell def: "Cell expressing ecmB but not ecmA. Most pstB cells are located at the very rear of the slug (rearguard region). These cells form part of the basal disc of the fruiting body. If a migratory slug is formed, these cells are left behind." [DictyBase:DDB] synonym: "pstB" EXACT [] is_a: CL:0000269 ! prestalk cell [Term] id: CL:0000276 name: sclerenchyma cell namespace: cell def: "Obsolete. Use PO:0000077 from Plant Ontology instead. Cell variable in form and size, being more or less thick, often lignified, secondary walls. Belongs to the category of subcells and may or may not be devoid of protoplast at maturity." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000077 [Term] id: CL:0000277 name: prestalk I cell namespace: cell def: "Initial population of prestalk cells that activate the ecmA promoter at the mound stage and that presumably further differentiate into pstA and pstO cells." [DictyBase:DDB] is_a: CL:0000269 ! prestalk cell [Term] id: CL:0000278 name: central cell namespace: cell def: "Obsolete. Use PO:0020090 from Plant Ontology instead. OBSOLETED, use term from Plant Ontology. A cell containing the two polar nuclei which, after double fertilization, will develop into the endosperm." [TAIR:lr] is_obsolete: true comment: replaced_by: PO:0020090 [Term] id: CL:0000279 name: prestalk 0 cell namespace: cell def: "Cell that express ecmA at a very low level. Located at the posterior half of the prestalk zone. Expresses ecmA from the distal region of its promoter (ecmO)." [DictyBase:DDB] is_a: CL:0000269 ! prestalk cell [Term] id: CL:0000280 name: generative cell namespace: cell def: "Obsolete. Use PO:0020097 from Plant Ontology instead. The cell that will give rise to the generative nuclei which will participate in fertilization." [TAIR:lr] is_obsolete: true comment: replaced_by: PO:0020097 [Term] id: CL:0000281 name: pstAB/ALC namespace: cell def: "Anterior-like cell expressing both ecmA and ecmB." [DictyBase:DDB] is_a: CL:0000265 ! anterior like cell [Term] id: CL:0000282 name: trichome namespace: cell def: "Obsolete. Use PO:0000282 from Plant Ontology instead. An outgrowth from the epidermis. Trichomes vary in size and complexity and include hairs, scales, and other structures and may be glandular. In Arabidopsis, patterning of trichome development is not random but does not appear to be lineage-based like stomata." [ISBN:0471245208, PMID:10938806] is_obsolete: true comment: replaced_by: PO:0000282 [Term] id: CL:0000283 name: pstO/ALC namespace: cell def: "Anterior-like cell that expresses the ecmO promoter and that can move to the position normally occupied by the pstO cells." [DictyBase:DDB] is_a: CL:0000265 ! anterior like cell [Term] id: CL:0000284 name: companion cell namespace: cell def: "Obsolete. Use PO:0000071 from Plant Ontology instead. A specialized parenchyma cell associated with a sieve-tube member in angiosperm phloem and arising from the same mother cell as the sieve-tube member." [ISBN:0879015322] is_obsolete: true comment: replaced_by: PO:0000071 [Term] id: CL:0000285 name: stalk cell namespace: cell def: "Vacuolated cell located at the center of the stalk tube that has a cell wall composed of cellulose and that die upon terminal differentiation. Stalk cells provide structural support for the fruiting body." [DictyBase:DDB] is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) [Term] id: CL:0000286 name: hyphal cell namespace: cell def: "A cell of a filament of a fungal mycelium." [ISBN:08199377X] is_a: CL:0000521 ! fungal cell [Term] id: CL:0000287 name: eye photoreceptor cell namespace: cell is_a: CL:0000210 ! photoreceptor cell relationship: part_of UBERON:0001787 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! photoreceptor layer of retina relationship: part_of UBERON:0001787 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! photoreceptor layer of retina relationship: part_of UBERON:0001789 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! outer nuclear layer of retina [Term] id: CL:0000288 name: synergid namespace: cell def: "Obsolete. Use PO:0000191 from Plant Ontology instead. A cell in the micropylar end of the embryo sac associated with the egg in the egg apparatus of angiosperms. Plays a vital role in fertilization." [ISBN:047125208] is_obsolete: true comment: replaced_by: PO:0000191 [Term] id: CL:0000289 name: chemotactic amoeboid cell (sensu Mycetozoa) namespace: cell def: "Starved cell that secretes and responds to chemoattractants (cAMP)." [DictyBase:DDB] is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) is_a: CL:0000732 ! amoeboid cell [Term] id: CL:0000290 name: xylem fiber cell namespace: cell def: "Obsolete. Use PO:0000274 from Plant Ontology instead. A fiber of the xylem tissue, Two types are recognized in the secondary xylem: fiber tracheids and libriform fibers." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000274 [Term] id: CL:0000291 name: spore (sensu Mycetozoa) namespace: cell def: "Dormant cell protected by a tri-layer spore coat. The spore has an elliptical shape and is approximately 6-9 microns by 3 microns." [DDB_REF:5048, DictyBase:DDB, PMID:4338436] xref: DDANAT:0000414 is_a: CL:0000263 ! vegetative cell (sensu Mycetozoa) [Term] id: CL:0000292 name: guard cell namespace: cell def: "Obsolete. Use PO:0000293 from Plant Ontology instead. One of a pair of cells flanking the stomatal pore and causing the opening and closing of the pore by changes in turgor." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000293 synonym: "stomatal guard cell" EXACT [] [Term] id: CL:0000293 name: structural cell namespace: cell def: "A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism." [TAIR:sr] is_a: CL:0000144 ! cell by function [Term] id: CL:0000294 name: sieve cell namespace: cell def: "Obsolete. Consult Plant Ontology instead. A type of sieve element that has relatively undifferentiated sieve areas (with narrow pores), rather uniform in structure on all walls; that is, there are no sieve plates. Typical of gymnosperms and lower vascular plants." [ISBN:0471245208] is_obsolete: true [Term] id: CL:0000295 name: somatotropin secreting cell namespace: cell alt_id: CL:0000471 def: "A peptide hormone secreting cell that produces growth hormone, somatotropin." [GOC:tfm, SANBI:mhl] synonym: "growth hormone secreting cell" EXACT [] synonym: "somatotrophin secreting cell" EXACT [] is_a: CL:0000167 ! peptide hormone secreting cell relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000296 name: vegetative cell namespace: cell def: "Obsolete. Use PO:0020099 from Plant Ontology instead. Cell type formed after the first mitotic division of the microgametophye, The nucleus of this cell migrates to the tip of the pollen tube after germination and disintegrates when the pollen tube penetrates the nucellus." [ISBN:0140514031, TAIR:lr] is_obsolete: true comment: replaced_by: PO:0020099 [Term] id: CL:0000297 name: socket cell namespace: cell def: "Obsolete. Use PO:0000115 from Plant Ontology instead. A cell that surrounds a trichome and provides support for the trichome." [PMID:10938806] is_obsolete: true comment: replaced_by: PO:0000115 [Term] id: CL:0000298 name: xylem element namespace: cell def: "Obsolete. Use PO:0000273 from Plant Ontology instead. A cell composing the xylem." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000273 [Term] id: CL:0000299 name: trichoblast namespace: cell def: "OBSOLETED. Commonly used for a cell in root epidermis that gives rise to a root hair. The daughter cell produced by the asymmetric division of a root epidermal cell that gives rise to a root hair." [ISBN:0471245208] is_obsolete: true comment: Obsoleted. Use trichoblast from the plant ontology (PO:0000262). [Term] id: CL:0000300 name: gamete namespace: cell def: "A mature sexual reproductive cell having a single set of unpaired chromosomes." [GOC:tfm, ISBN:0721662544] synonym: "haploid germ cell" RELATED [] synonym: "haploid nucleated cell" EXACT [] xref: FBbt:00005412 xref: FMA:18649 is_a: CL:0000586 ! germ cell relationship: part_of UBERON:0000991 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! gonad relationship: part_of UBERON:0000991 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! gonad [Term] id: CL:0000301 name: pole cell namespace: cell xref: FBbt:00000092 is_a: CL:0000670 ! primordial germ cell [Term] id: CL:0000302 name: IgM B cell namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Not a differentiation state per se; consider using 'B cell ; CL:0000236' or one of its children instead. [Term] id: CL:0000303 name: IgG B cell namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Not a differentiation state per se, and IgG isotypes vary by species; consider using 'B cell ; CL:0000236' or one of its children instead. [Term] id: CL:0000304 name: IgA B cell namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Not a differentiation state per se, and IgA isotypes vary by species. Consider using 'B cell ; CL:0000236' or one of its children instead. [Term] id: CL:0000305 name: IgE B cell namespace: cell def: "OBSOLETE (was not defined before being made obsolete)." [] is_obsolete: true comment: Not a differentiation state per se; consider using 'B cell ; CL:0000236' or one of its children instead. [Term] id: CL:0000306 name: crystallin accumulating cell namespace: cell synonym: "lens cell" EXACT [] xref: FBbt:00004193 is_a: CL:0000325 ! stuff accumulating cell relationship: part_of UBERON:0000971 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ommatidium [Term] id: CL:0000307 name: tracheal epithelial cell namespace: cell alt_id: CL:1000474 def: "An epithelial cell found in the trachea." [GOC:tfm] synonym: "tracheocyte" EXACT [] xref: FBbt:00005038 xref: FMA:74793 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree relationship: develops_from CL:0000377 ! tracheoblast relationship: part_of UBERON:0005155 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! open tracheal system [Term] id: CL:0000308 name: metal ion accumulating cell namespace: cell is_a: CL:0000325 ! stuff accumulating cell [Term] id: CL:0000309 name: copper accumulating cell namespace: cell synonym: "cuprophilic cell" EXACT [] is_a: CL:0000308 ! metal ion accumulating cell [Term] id: CL:0000310 name: iron accumulating cell namespace: cell is_a: CL:0000308 ! metal ion accumulating cell [Term] id: CL:0000311 name: keratin accumulating cell namespace: cell is_a: CL:0000325 ! stuff accumulating cell [Term] id: CL:0000312 name: keratinocyte namespace: cell alt_id: CL:0002185 def: "An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell." [GOC:dsd, MESH:A.11.436.397, MESH:D015603, PMID:15582983, PMID:15749908, PMID:19727116] comment: Keratinocytes are reportedly CDw210a-negative, CDw210b-positive, CD281-positive, CD282-positive, CD285-positive, IL22Ra1-positive, Human keratinocytes are reportedly capable of secreting BD-2, BD-3, hCAP-18, CXCL1, CXCL5, CXCL8, elafin, MMP-3, NGAL, PDGF-A, S100A7, S100A8, and S100A9. Transcription factors: STAT3-positive. synonym: "keratinized cell of epidermis" EXACT [] synonym: "malpighian cell" EXACT [] xref: BTO:0000667 xref: FMA:62879 is_a: CL:0000237 ! keratinizing barrier epithelial cell is_a: CL:0000362 ! epidermal cell [Term] id: CL:0000313 name: serous secreting cell namespace: cell def: "Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid." [GOC:tfm, ISBN:0517223651, ISBN:0721662544] synonym: "serous cell" EXACT [] xref: BTO:0003687 xref: FMA:62511 is_a: CL:0000159 ! seromucus secreting cell [Term] id: CL:0000314 name: milk secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000315 name: tears secreting cell namespace: cell def: "A cell secreting tears, the fluid secreted by the lacrimal glands. This fluid moistens the conjunctiva and cornea." [MESH:A.12.200.882] is_a: CL:0000151 ! secretory cell [Term] id: CL:0000316 name: ray initial namespace: cell def: "Obsolete. Use PO:0000082 from Plant Ontology instead. OBSOLETE, use term from Plant Ontology. A meristemic ray cell in the vascular cambium that gives rise to ray cells of the secondary xylem and secondary phloem." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000082 [Term] id: CL:0000317 name: sebum secreting cell namespace: cell def: "A cell secreting sebun, an oily substance secreted by sebaceous glands, composed of keratin, fat, and cellular debris." [MESH:A.12.200.702] is_a: CL:0000151 ! secretory cell [Term] id: CL:0000318 name: sweat secreting cell namespace: cell def: "A cell secreting sweat, the fluid excreted by the sweat glands of mammals. It consists of water containing sodium chloride, phosphate, urea, ammonia, and other waste products." [MESH:A.12.200.849] is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000319 name: mucus secreting cell namespace: cell synonym: "mucous cell" EXACT [] xref: BTO:0003689 is_a: CL:0000159 ! seromucus secreting cell relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument relationship: part_of UBERON:0002405 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! immune system [Term] id: CL:0000320 name: megasporocyte namespace: cell def: "Obsolete. Use PO:0000431 from Plant Ontology instead. A diploid (2n) cell that undergoes meiosis and produces four haploid (1n) megaspores; also called megaspore mother cell." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000431 synonym: "archesporial cell" EXACT [] synonym: "megaspore mother cell" EXACT [] [Term] id: CL:0000321 name: seminal fluid secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000322 name: pneumocyte namespace: cell def: "An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [GOC:tfm, PMID:20054144] synonym: "alveolar epithelial cell" EXACT [] synonym: "pneumonocyte" EXACT [] xref: BTO:0000395 xref: FMA:62499 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002202 ! epithelial cell of tracheobronchial tree relationship: part_of UBERON:0004821 ! pulmonary alveolus epithelium [Term] id: CL:0000323 name: lysozyme secreting cell namespace: cell is_a: CL:0000154 ! protein secreting cell [Term] id: CL:0000324 name: metanephric mesenchyme stem cell namespace: cell is_a: CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000222 ! mesodermal cell [Term] id: CL:0000325 name: stuff accumulating cell namespace: cell def: "A cell that is specialised to accumulate a particular substance(s)." [FB:ma] is_a: CL:0000144 ! cell by function [Term] id: CL:0000326 name: glycogen accumulating cell namespace: cell is_a: CL:0000325 ! stuff accumulating cell [Term] id: CL:0000327 name: extracellular matrix secreting cell namespace: cell is_a: CL:0000151 ! secretory cell is_a: CL:0000499 ! stromal cell [Term] id: CL:0000328 name: myelin accumulating cell namespace: cell is_a: CL:0000325 ! stuff accumulating cell [Term] id: CL:0000329 name: oxygen accumulating cell namespace: cell is_a: CL:0000144 ! cell by function [Term] id: CL:0000330 name: collenchymal cell namespace: cell def: "Obsolete. Use PO:0000075 from Plant Ontology instead. An elongated living cell with unevenly thickened nonlignified primary walls." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000075 [Term] id: CL:0000331 name: tracheid namespace: cell def: "Obsolete. Use PO:0000301 from Plant Ontology instead. A tracheary element of the xylem that has no perforations, as contrasted with a vessel member. May occur in primary and in secondary xylem. May have any kind of secondary wall thickening found in tracheary elements." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000301 [Term] id: CL:0000332 name: atrichoblast namespace: cell def: "OBSOLETE, use term from Plant Ontology. A cell formed after asymmetric division of root epidermal cell that does not give rise to a root hair." [ISBN:0387987819] is_obsolete: true comment: replaced_by: PO:0020090 synonym: "non-hair cell" RELATED [] [Term] id: CL:0000333 name: neural crest cell namespace: cell def: "A cell of the strip of specialized ectoderm flanking each side of the embryonal neural plate, which after the closure of the neural tube, forms a column of isolated cells along the dorsal aspect of the neural tube. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [MESH:A.16.254.600] xref: FMA:86667 is_a: CL:0000219 ! motile cell is_a: CL:0000220 ! cell by lineage is_a: CL:0002321 ! embryonic cell relationship: develops_from CL:0000133 ! neurectodermal cell relationship: part_of UBERON:0002342 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural crest [Term] id: CL:0000334 name: vegetative cell (sensu Fungi) namespace: cell synonym: "yeast-form" RELATED [] xref: BTO:0002307 xref: FAO:0000032 is_a: CL:0000521 ! fungal cell [Term] id: CL:0000335 name: mesenchyme condensation cell namespace: cell def: "A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors." [GOC:tfm, PMID:5025404] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0000336 name: adrenal medulla chromaffin cell namespace: cell alt_id: CL:1000422 def: "A cell found within the adrenal medulla that secrete biogenic amine hormones upon stimulation." [GOC:tfm, http://www.britannica.com/EBchecked/topic/6405/adrenal-gland] synonym: "medullary chromaffin cell of adrenal gland" EXACT [FMA:69262] xref: FMA:69262 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000166 ! chromaffin cell is_a: CL:0000457 ! biogenic amine secreting cell relationship: develops_from CL:0000011 ! trunk neural crest cell [Term] id: CL:0000337 name: neuroblast (sensu Vertebrata) namespace: cell def: "An embryonic cell that develops into a nerve cell or neuron." [FMA:70563] is_a: CL:0000031 ! neuroblast [Term] id: CL:0000338 name: neuroblast (sensu Nematoda and Protostomia) namespace: cell synonym: "neuroblast" BROAD [] is_a: CL:0000031 ! neuroblast [Term] id: CL:0000339 name: glioblast (sensu Vertebrata) namespace: cell def: "An early neural cell developing from the early ependymal cell of the neural tube." [GOC:tfm, ISBN:0618947256] synonym: "spongioblast" EXACT [] xref: FMA:70564 is_a: CL:0000030 ! glioblast is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) [Term] id: CL:0000340 name: glioblast (sensu Nematoda and Protostomia) namespace: cell is_a: CL:0000030 ! glioblast is_a: CL:0000130 ! neuron associated cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! nervous system [Term] id: CL:0000341 name: pigment cell (sensu Nematoda and Protostomia) namespace: cell is_a: CL:0000147 ! pigment cell [Term] id: CL:0000342 name: pigment cell (sensu Vertebrata) namespace: cell def: "Any animal cell containing pigment granules." [GOC:tfm, ISBN:0721662544] is_a: CL:0000147 ! pigment cell [Term] id: CL:0000343 name: visual pigment cell (sensu Vertebrata) namespace: cell def: "A pigment cell that is capable of detecting light stimulus that is involved in visual perception." [GOC:tfm] xref: FMA:63846 is_a: CL:0000149 ! visual pigment cell is_a: CL:0000342 ! pigment cell (sensu Vertebrata) relationship: part_of UBERON:0000966 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! retina [Term] id: CL:0000344 name: non-visual cell (sensu Vertebrata) namespace: cell is_obsolete: true [Term] id: CL:0000345 name: dental papilla cell namespace: cell def: "A small mass of condensed mesenchyme in the enamel organ; it differentiates into the dentin and dental pulp." [GOC:tfm, ISBN:0721662544] is_a: CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000008 ! cranial neural crest cell [Term] id: CL:0000346 name: hair follicle dermal papilla cell namespace: cell def: "A specialized mesenchymal cell that resides in the dermal papilla located at the bottom of hair follicles. This cell plays a pivotal roles in hair formation, growth, and cycling." [GOC:tfm, PMID:9893172] is_a: CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0000347 name: scleral cell namespace: cell def: "A cell of the sclera of the eye." [GOC:add] is_a: CL:0000293 ! structural cell relationship: develops_from CL:0000008 ! cranial neural crest cell relationship: part_of UBERON:0001773 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! sclera [Term] id: CL:0000348 name: choroidal cell of the eye namespace: cell def: "A cell of the choroid of the eye." [GOC:add] is_a: CL:0000293 ! structural cell relationship: develops_from CL:0000008 ! cranial neural crest cell [Term] id: CL:0000349 name: extraembryonic cell namespace: cell is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000350 name: amnioserosal cell namespace: cell is_a: CL:0000349 ! extraembryonic cell [Term] id: CL:0000351 name: trophoblast cell namespace: cell def: "A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface." [GOC:tfm, MESH:A.11.936] synonym: "trophoblastic cell" EXACT [] xref: FMA:83028 is_a: CL:0000349 ! extraembryonic cell [Term] id: CL:0000352 name: epiblast cell namespace: cell def: "A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation." [GOC:tfm, ISBN:0618947256] is_a: CL:0000052 ! totipotent stem cell [Term] id: CL:0000353 name: blastoderm cell namespace: cell def: "An undifferentiated cell produced by early cleavages of the fertilized egg (zygote)." [MESH:A.11.104] synonym: "blastomere" EXACT [] xref: BTO:0001473 xref: FMA:72551 is_a: CL:0000007 ! early embryonic cell relationship: part_of UBERON:0004750 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blastoderm [Term] id: CL:0000354 name: blastemal cell namespace: cell is_a: CL:0000048 ! multi fate stem cell [Term] id: CL:0000355 name: muscle stem cell namespace: cell def: "A multifate stem cell found in skeletal muscle than can differentiate into many different cell types. Distinct cell type from satellite cell." [PMID:18282570] xref: FMA:86767 is_a: CL:0000048 ! multi fate stem cell is_a: CL:0000035 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! single fate stem cell is_a: CL:0000680 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle precursor cell [Term] id: CL:0000356 name: hair matrix stem cell namespace: cell is_a: CL:0000035 ! single fate stem cell [Term] id: CL:0000357 name: stratified epithelial stem cell namespace: cell is_a: CL:0000036 ! epithelial fate stem cell [Term] id: CL:0000358 name: sphincter associated smooth muscle cell namespace: cell def: "A smooth muscle cell that is part of a sphincter. A sphincter is a typically circular muscle that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning." [GOC:cjm] is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0000359 name: vascular associated smooth muscle cell namespace: cell def: "A smooth muscle cell assocatiated with the vasculature." [GOC:dsd, GOC:tfm] synonym: "VSMC" EXACT [] synonym: "vascular smooth muscle cell" EXACT [] is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0000360 name: morula cell namespace: cell def: "A cell of the early embryo at the developmental stage in which the blastomeres, resulting from repeated mitotic divisions of the fertilized ovum (zygote), form a compact cell mass." [MESH:A.16.254.270.550] is_a: CL:0000007 ! early embryonic cell [Term] id: CL:0000361 name: gastrula cell namespace: cell def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [MESH:A.16.254.412] is_a: CL:0000007 ! early embryonic cell [Term] id: CL:0000362 name: epidermal cell namespace: cell alt_id: CL:1000396 def: "An epithelial cell of the integument (the outer layer of an organism)." [Flybase:dsj, MA:ma] synonym: "cell of epidermis" EXACT [FMA:62411] synonym: "epithelial cell of skin" NARROW [FMA:62411] xref: BTO:0001470 xref: FMA:62411 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0002159 ! general ecto-epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000363 name: axial cell namespace: cell def: "Obsolete. Use PO:0000081 from Plant Ontology instead. OBSOLETE, use term from the Plant Ontology. A secondary vascular cell that develops from the fusiform cambial initials and oriented with their longest diameter parallel with the main axis of stem or root. These cells make up the axial system, also known as vertical or longitudinal system." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000081 [Term] id: CL:0000364 name: ray cell namespace: cell def: "Obsolete. Consult Plant Ontology. A cell that develops from the ray initial and composes all rays (panels of tissue variable in height and width, formed by the ray initials in the vascular cambium and extending radially in the secondary xylem and secondary phloem) in the secondary vascular tissues." [ISBN:0471245208] is_obsolete: true [Term] id: CL:0000365 name: zygote namespace: cell def: "Diploid cell produced by the fusion of sperm cell nucleus and egg cell." [ISBN:0471245208] xref: BTO:0000854 xref: FMA:72395 is_a: CL:0000007 ! early embryonic cell is_a: CL:0000220 ! cell by lineage [Term] id: CL:0000366 name: sperm cell (sensu Viridiplantae) namespace: cell def: "Obsolete. Use PO:0000084 from Plant Ontology instead. Male gamete, part of male germ unit." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000084 synonym: "gametophyte sperm cell" RELATED [] synonym: "male gametophyte sperm cell" RELATED [] synonym: "pollen germ cell " RELATED [] [Term] id: CL:0000367 name: sheath cell (sensu Nematoda) namespace: cell synonym: "glial cell (sensu Nematoda)" RELATED [] is_a: CL:0000619 ! support cell (sensu Nematoda) [Term] id: CL:0000368 name: myrosin cell namespace: cell def: "Obsolete. Use PO:0000352 from Plant Ontology instead. Cell containing glucosinolates ('mustard oil glucosides') and myrosinases, enzymes hydrolyzing the glucosinolates. Occurs in eleven dicotyledon families, the two largest of which are the Brassicaceae and Euphorbiaceae." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000352 [Term] id: CL:0000370 name: transfer cell namespace: cell def: "Obsolete. Use PO:0000078 from Plant Ontology instead. Parenchyma cell with the wall ingrowth (or invaginations) that increase the surface of the plasmalemma. Appears to be specialized for short-distance transfer of solutes." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000078 synonym: "intermediary cell" RELATED [] [Term] id: CL:0000371 name: protoplast namespace: cell def: "The cell protoplasm after removal of the cell wall." [ISBN:08199377X] is_a: CL:0000578 ! experimentally modified cell in vitro [Term] id: CL:0000372 name: tormogen cell namespace: cell def: "An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization that forms a socket around the base of a cuticular specialization produced by a trichogen cell." [ISBN:978-0801481253] synonym: "socket cell" BROAD [ISBN:978-0801481253] xref: FBbt:00005171 is_a: CL:0000463 ! epidermal cell (sensu arthropoda) [Term] id: CL:0000373 name: histoblast namespace: cell xref: FBbt:00001789 is_a: CL:0000146 ! simple columnar epithelial cell is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryonic structure is_a: UBERON:0005423 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! developing anatomical structure relationship: develops_from UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryonic structure [Term] id: CL:0000374 name: trichogen cell namespace: cell def: "An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization, often in the form of a hair, bristle, peg or scale. The base of this specialization is often surrounded by a socket produced by a closely associated tormogen cell." [ISBN:978-0801481253] synonym: "hair cell" BROAD [] xref: BTO:0004744 xref: FBbt:00005169 is_a: CL:0000463 ! epidermal cell (sensu arthropoda) [Term] id: CL:0000375 name: osteoprogenitor cell namespace: cell xref: BTO:0002051 is_a: CL:0000035 ! single fate stem cell relationship: develops_from CL:0000335 ! mesenchyme condensation cell [Term] id: CL:0000376 name: humidity receptor cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:0000377 name: tracheoblast namespace: cell is_a: CL:0000069 ! branched duct epithelial cell [Term] id: CL:0000378 name: support cell (sensu Nematoda and Protostomia) namespace: cell is_a: CL:0000630 ! supportive cell [Term] id: CL:0000379 name: sensory processing neuron namespace: cell is_a: CL:0000540 ! neuron [Term] id: CL:0000380 name: thecogen cell namespace: cell def: "The support cell that makes the thecogen dendritic cap - a cuticle-like matrix around the tip of the eo-dendrite and which encloses the soma of the eo-neuron." [Fbbt:00005173] synonym: "fly sheath cell" EXACT [] is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) [Term] id: CL:0000381 name: neurosecretory neuron namespace: cell xref: FBbt:00005130 is_a: CL:0000527 ! efferent neuron [Term] id: CL:0000382 name: scolopidium namespace: cell synonym: "scolopale cell" EXACT [] xref: FBbt:00005217 is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) is_a: UBERON:0000020 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! sense organ is_a: UBERON:0002536 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! arthropod sensillum relationship: part_of UBERON:0001038 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! chordotonal organ [Term] id: CL:0000383 name: nephrogenic mesenchyme stem cell namespace: cell is_a: CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000134 ! mesenchymal cell [Term] id: CL:0000384 name: ligament cell namespace: cell is_a: CL:0000630 ! supportive cell relationship: part_of UBERON:0008846 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! skeletal ligament [Term] id: CL:0000385 name: prohemocyte (sensu Nematoda and Protostomia) namespace: cell xref: FBbt:00005062 is_a: CL:0000390 ! blood cell (sensu Nematoda and Protostomia) is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryonic structure relationship: part_of UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo [Term] id: CL:0000386 name: attachment cell namespace: cell is_a: CL:0000630 ! supportive cell [Term] id: CL:0000387 name: hemocyte (sensu Nematoda and Protostomia) namespace: cell is_a: CL:0000519 ! phagocyte (sensu Nematoda and Protostomia) relationship: develops_from CL:0000385 ! prohemocyte (sensu Nematoda and Protostomia) [Term] id: CL:0000388 name: tendon cell namespace: cell def: "A fibrocyte that is part of a tendon." [GOC:tfm] synonym: "muscle attachment cell" EXACT [] synonym: "tenocyte" RELATED [] is_a: CL:0000135 ! fibrocyte is_a: CL:0000386 ! attachment cell [Term] id: CL:0000389 name: socket cell (sensu Nematoda) namespace: cell is_a: CL:0000619 ! support cell (sensu Nematoda) is_a: CL:0000658 ! cuticle secreting cell [Term] id: CL:0000390 name: blood cell (sensu Nematoda and Protostomia) namespace: cell is_a: CL:0000081 ! blood cell [Term] id: CL:0000391 name: podocyte (sensu Diptera) namespace: cell def: "An insect immune cell that develops from plasmatocyte." [PMID:12930778] is_a: CL:0000387 ! hemocyte (sensu Nematoda and Protostomia) relationship: develops_from CL:0000394 ! plasmatocyte [Term] id: CL:0000392 name: crystal cell namespace: cell xref: FMA:63847 is_a: CL:0000391 ! podocyte (sensu Diptera) [Term] id: CL:0000393 name: electrically responsive cell namespace: cell def: "A cell whose function is determined by its response to an electric signal." [FB:ma] is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000394 name: plasmatocyte namespace: cell xref: FBbt:00001685 is_a: CL:0000387 ! hemocyte (sensu Nematoda and Protostomia) relationship: develops_from UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! mesoderm [Term] id: CL:0000395 name: procrystal cell namespace: cell xref: FBbt:00001689 is_a: CL:0000387 ! hemocyte (sensu Nematoda and Protostomia) relationship: part_of UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo [Term] id: CL:0000396 name: lamellocyte namespace: cell xref: FBbt:00001687 is_a: CL:0000394 ! plasmatocyte relationship: develops_from UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! mesoderm [Term] id: CL:0000397 name: ganglion interneuron namespace: cell is_a: CL:0000099 ! interneuron [Term] id: CL:0000398 name: polygonal cell namespace: cell xref: FBbt:00001691 is_a: CL:0000387 ! hemocyte (sensu Nematoda and Protostomia) [Term] id: CL:0000399 name: phloem element namespace: cell def: "Obsolete. Consult Plant Ontology instead. OBSOLETED, not defined prior to obsoletion." [GOC:tfm] is_obsolete: true [Term] id: CL:0000400 name: pavement cell namespace: cell def: "Obsolete. Use PO:0000332 from Plant Ontology instead. An epidermal cell with a characteristic convoluted anticlinal cell wall that gives a jigsaw like appearance to the lamina." [ISBN:087694289] is_obsolete: true comment: replaced_by: PO:0000332 [Term] id: CL:0000401 name: macrophage (sensu Diptera) namespace: cell xref: FBbt:00001686 is_a: CL:0000394 ! plasmatocyte [Term] id: CL:0000402 name: CNS interneuron namespace: cell is_a: CL:0000099 ! interneuron is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000404 name: electrically signaling cell namespace: cell def: "A cell that initiates an electrical signal and passes that signal to another cell." [FB:ma] is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000405 name: neuroepidermoblast namespace: cell xref: FBbt:00005148 is_a: CL:0000338 ! neuroblast (sensu Nematoda and Protostomia) [Term] id: CL:0000406 name: CNS short range interneuron namespace: cell is_a: CL:0000402 ! CNS interneuron [Term] id: CL:0000407 name: scolopidial ligament cell namespace: cell xref: FBbt:00005221 is_a: CL:0000384 ! ligament cell relationship: part_of CL:0000382 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! scolopidium [Term] id: CL:0000408 name: male gamete namespace: cell xref: BTO:0001277 is_a: CL:0000015 ! male germ cell is_a: CL:0000300 ! gamete [Term] id: CL:0000409 name: scolopidial sheath cell namespace: cell xref: FBbt:00005219 is_a: CL:0000618 ! sheath cell relationship: part_of CL:0000382 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! scolopidium [Term] id: CL:0000410 name: CNS long range interneuron namespace: cell is_a: CL:0000402 ! CNS interneuron [Term] id: CL:0000411 name: hypodermal cell namespace: cell def: "An epithelial cell of the hypodermis of flatworms." [GOC:tfm, http://www.wormatlas.org/hermaphrodite/hypodermis/mainframe.htm] xref: WBbt:0007846 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000228 ! multinucleate cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000412 name: polyploid cell namespace: cell def: "A cell whose nucleus, or nuclei, each contain more than two haploid genomes." [FB:ma] is_a: CL:0000414 ! cell by ploidy [Term] id: CL:0000413 name: haploid cell namespace: cell def: "A cell whose nucleus contains a single haploid genome." [FB:ma, GOC:tfm] is_a: CL:0000414 ! cell by ploidy [Term] id: CL:0000414 name: cell by ploidy namespace: cell def: "A classification of cells by the number of haploid genome equivalents of their nucleus or nuclei." [FB:ma, GOC:tfm] is_a: CL:0000012 ! cell by class [Term] id: CL:0000415 name: diploid cell namespace: cell def: "A cell whose nucleus has two haploid genomes." [FB:ma] xref: FMA:72300 is_a: CL:0000414 ! cell by ploidy [Term] id: CL:0000416 name: polytene cell namespace: cell is_a: CL:0000412 ! polyploid cell [Term] id: CL:0000417 name: endopolyploid cell namespace: cell is_a: CL:0000412 ! polyploid cell [Term] id: CL:0000418 name: arcade cell namespace: cell def: "An epithelial cell found in C. elegans that firmly hold the outer body wall and the lips to the inner cylinder of the pharynx in a manner that keeps these organs from breaking apart, while still giving each organ freedom of movement during feeding." [GOC:tfm, http://www.wormatlas.org/ver1/handbook/hypodermis/hypsupportother.htm#arcadecells] xref: WBbt:0005793 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000419 name: seam cell namespace: cell def: "An epithelial fate stem cell found in flatworms." [GOC:tfm, http://www.wormatlas.org/hermaphrodite/seam%20cells/mainframe.htm] xref: BTO:0003039 is_a: CL:0000036 ! epithelial fate stem cell [Term] id: CL:0000420 name: syncytial epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell is_a: CL:0000228 ! multinucleate cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000421 name: coelomocyte namespace: cell def: "A free floating cell, including amebocytes and eleocytes, in the coelom of certain animals, especially annelids." [GOC:tfm, ISBN:0721662544] xref: BTO:0002856 xref: WBbt:0005751 is_a: CL:0000080 ! circulating cell is_a: CL:0000519 ! phagocyte (sensu Nematoda and Protostomia) [Term] id: CL:0000422 name: mitogenic signaling cell namespace: cell def: "A cell whose primary function is to cause growth by stimulating cell division in its immediate cellular environment." [FB:ma] is_a: CL:0000144 ! cell by function [Term] id: CL:0000423 name: tip cell namespace: cell is_a: CL:0000422 ! mitogenic signaling cell [Term] id: CL:0000424 name: excretory cell namespace: cell def: "A cell involved in the elimination of metabolic and foreign toxins, and in maintaining the ionic, acid-base and water balance of biological fluids." [GOC:tfm, PMID:19783135] xref: WBbt:0005812 is_a: CL:0000151 ! secretory cell [Term] id: CL:0000425 name: pore cell namespace: cell def: "Forms the terminal part of the cuticle-lined excretory duct of C. elegans." [JB:jb] is_a: CL:0000658 ! cuticle secreting cell [Term] id: CL:0000426 name: scaffold cell namespace: cell is_a: CL:0000445 ! apoptosis fated cell [Term] id: CL:0000427 name: GLR cell namespace: cell def: "A scaffolding cell type found in C. elegans, this cell plays a supportive role to the muscle arms. May also have an endocrine role." [GOC:tfm, http://wormatlas.psc.edu/hermaphrodite/muscleGLR/mainframe.htm] is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0000428 name: yolk cell namespace: cell is_a: CL:0000325 ! stuff accumulating cell is_a: CL:0000349 ! extraembryonic cell [Term] id: CL:0000429 name: imaginal disc cell namespace: cell is_a: CL:0000146 ! simple columnar epithelial cell [Term] id: CL:0000430 name: xanthophore namespace: cell def: "A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red." [SANBI:mhl] is_a: CL:0000147 ! pigment cell relationship: develops_from CL:0005002 ! xanthoblast relationship: part_of UBERON:0002097 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! skin of body relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument [Term] id: CL:0000431 name: iridophore namespace: cell def: "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color." [SANBI:mhl] is_a: CL:0000147 ! pigment cell relationship: develops_from CL:0005001 ! iridoblast relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument [Term] id: CL:0000432 name: reticular cell namespace: cell def: "Large, stellate fibroblast found along the network of collagen fibers of the reticulum of the spleen; synthesize the matrix components of the reticulum." [GOC:tfm, ISBN:0517223651] synonym: "reticulum cell" EXACT [] xref: FMA:62877 is_a: CL:0000057 ! fibroblast [Term] id: CL:0000433 name: functional megaspore namespace: cell def: "Obsolete. Use PO:0000244 from Plant Ontology instead. In monosporic and bisporic megasporogenesis: the megaspore(s) that will undergo megagametogenesis." [TAIR:lr] is_obsolete: true comment: replaced_by: PO:0000244 [Term] id: CL:0000434 name: eccrine cell namespace: cell def: "A secretory cell that discharges its product without loss of cytoplasm." [ISBN:0198547684] is_a: CL:0000150 ! glandular epithelial cell [Term] id: CL:0000435 name: alkali secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000436 name: vaginal lubricant secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000437 name: gonadtroph namespace: cell def: "A rounded cell that is usually situated next to sinusoids; secretes follicular stimulating hormone (FSH) and luteinizing hormone (LH)." [GOC:tfm, ISBN:0517223651, http:63.198.234.228/OpenFMA/Gonadotroph.html] synonym: "delta basophil" EXACT [] synonym: "follicle stimulating hormone secreting cell" EXACT [] synonym: "gonadotrope" EXACT [] synonym: "gonadotrope cell" EXACT [] synonym: "gonadotroph" EXACT [] synonym: "pituitary delta cell" EXACT [] xref: BTO:0002482 xref: FMA:83100 is_a: CL:0000438 ! luteinizing hormone secreting cell is_a: CL:0000639 ! basophil cell of pars distalis of adenohypophysis [Term] id: CL:0000438 name: luteinizing hormone secreting cell namespace: cell def: "A peptide hormone secreting cell pituitary that produces luteinizing hormone." [GOC:tfm] is_a: CL:0000167 ! peptide hormone secreting cell relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000439 name: prolactin secreting cell namespace: cell def: "A peptide hormone cell that secretes prolactin." [GOC:tfm, SANBI:mhl] is_a: CL:0000167 ! peptide hormone secreting cell relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000440 name: melanocyte stimulating hormone secreting cell namespace: cell def: "A cell of the intermediate pituitary that produces melanocyte stimulating hormone." [SANBI:mhl] synonym: "melanotrope" EXACT [] synonym: "melanotroph" EXACT [] xref: BTO:0002277 is_a: CL:0000167 ! peptide hormone secreting cell relationship: part_of UBERON:0002432 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pars intermedia of adenohypophysis [Term] id: CL:0000441 name: follicle stem cell namespace: cell xref: FBbt:00004903 is_a: CL:0000036 ! epithelial fate stem cell relationship: part_of UBERON:0000474 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! female reproductive system [Term] id: CL:0000442 name: follicular dendritic cell namespace: cell def: "A cell with extensive dendritic processes found in the B cell areas (primary follicles and germinal centers) of lymphoid tissue. They are unrelated to the dendritic cell associated with T cells. Follicular dendritic cells have Fc receptors and C3b receptors, but unlike other dendritic cells, they do not process or present antigen in a way that allows recognition by T cells. Instead, they hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response." [ISBN:127520252] comment: Due to its unique lineage and distinct function, this is not a type of dendritic cell; CL:0000451. xref: BTO:0004267 xref: FMA:83037 is_a: CL:0000473 ! defensive cell [Term] id: CL:0000443 name: calcitonin secreting cell namespace: cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000444 name: obliquely striated muscle cell namespace: cell is_a: CL:0000737 ! striated muscle cell [Term] id: CL:0000445 name: apoptosis fated cell namespace: cell is_a: CL:0000144 ! cell by function [Term] id: CL:0000446 name: chief cell of parathyroid gland namespace: cell def: "An epithelial cell of the parathyroid gland that is arranged in wide, irregular interconnecting columns; responsible for the synthesis and secretion of parathyroid hormone." [FMA:69078, GOC:tfm, ISBN:0517223651] synonym: "parathyroid chief cell" EXACT [] synonym: "parathyroid gland chief cell" EXACT [] synonym: "parathyroid hormone secreting cell" EXACT [] synonym: "principal cell of parathyroid gland" EXACT [] xref: BTO:0004712 xref: FMA:69078 is_a: CL:0000167 ! peptide hormone secreting cell is_a: CL:0002260 ! epithelial cell of parathyroid gland [Term] id: CL:0000447 name: carbohydrate secreting cell namespace: cell is_a: CL:0000151 ! secretory cell [Term] id: CL:0000448 name: white fat cell namespace: cell def: "Fat cells with light coloration and few mitochondria. They contain a scant ring of cytoplasm surrounding a single large lipid droplet or vacuole." [GOC:tfm, MESH:A11.329.114.500] synonym: "white adipocyte" RELATED [] synonym: "white adipose cell" EXACT [] synonym: "white fat cell" EXACT [] xref: FMA:83434 is_a: CL:0000136 ! fat cell relationship: develops_from CL:0002334 ! preadipocyte [Term] id: CL:0000449 name: brown fat cell namespace: cell def: "A cell from the thermogenic form of adipose tissue found in newborns of many species, including humans, and in hibernating mammals. Brown fat is capable of rapid liberation of energy and seems to be important in the maintenance of body temperature immediately after birth and upon waking from hibernation." [MESH:A.10.165.114.322] synonym: "brown adipocyte" EXACT [] synonym: "brown adipose cell" EXACT [] xref: FMA:83435 is_a: CL:0000136 ! fat cell relationship: develops_from CL:0002335 ! brown preadipocyte [Term] id: CL:0000451 name: dendritic cell namespace: cell def: "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149] synonym: "interdigitating cell" RELATED [] synonym: "veiled cell" RELATED [] xref: BTO:0002042 xref: FMA:83036 is_a: CL:0000738 ! leukocyte is_a: CL:0000145 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! professional antigen presenting cell [Term] id: CL:0000452 name: thyroid hormone secreting cell namespace: cell is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000453 name: Langerhans cell namespace: cell def: "Langerhans cell is a conventional dendritic cell that has plasma membrane part CD207. A Langerhans cell is a stellate dendritic cell of myeloid origin, that appears clear on light microscopy and has a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus." [GOC:add, GOC:amm, GO_REF:0000031, ISBN:0721601464, ISBN:0781735149, PMCID:PMC2346585, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000021 )(PMID: 19243617). These cells are also CD1a-high, CD14-negative, CD207-positive (langerin), CD324-positive (E-cadherin), and DCIR-positive. They reside in the epidermis. synonym: "LC" EXACT [] synonym: "Langerhans' cell" EXACT [] xref: BTO:0000705 xref: FMA:63072 is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0000763 ! myeloid cell [Term] id: CL:0000454 name: epinephrin secreting cell namespace: cell def: "A cell capable of producting Epinephrine. Epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme, which is expressed in the adrenal glands, androgenic neurons, and in other cell types." [GOC:tfm, PMID:12438093] synonym: "adrenaline secreting cell" EXACT [] is_a: CL:0000457 ! biogenic amine secreting cell [Term] id: CL:0000455 name: starch sheath cell namespace: cell def: "Obsolete. Use PO:0004531 from Plant Ontology instead. A cell characterized by conspicuous and rather stable accumulation of starch." [ISBN:044174520] is_obsolete: true comment: replaced_by: PO:0004531 [Term] id: CL:0000456 name: mineralocorticoid secreting cell namespace: cell is_a: CL:0000174 ! steroid hormone secreting cell [Term] id: CL:0000457 name: biogenic amine secreting cell namespace: cell is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000458 name: serotonin secreting cell namespace: cell def: "A cell type that secretes 5-Hydroxytryptamine (serotonin)." [GOC:tfm, PMID:19630576] synonym: "5-HT secreting cell" EXACT [] synonym: "5-Hydroxytryptamine secreting cell" EXACT [] is_a: CL:0000457 ! biogenic amine secreting cell [Term] id: CL:0000459 name: norepinephrin secreting cell namespace: cell def: "A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme." [GOC:tfm, ISBN:068340007X] synonym: "noradrenalin secreting cell" EXACT [] is_a: CL:0000457 ! biogenic amine secreting cell [Term] id: CL:0000460 name: glucocorticoid secreting cell namespace: cell is_a: CL:0000174 ! steroid hormone secreting cell [Term] id: CL:0000462 name: adepithelial cell namespace: cell xref: FBbt:00003219 is_a: CL:0000680 ! muscle precursor cell is_a: CL:0000056 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! myoblast [Term] id: CL:0000463 name: epidermal cell (sensu arthropoda) namespace: cell def: "An epidermal cell that secretes chitinous cuticle from its apical side." [FlyBase:ds, ISBN:ISBN:978-0801481253] comment: While insect epidermis is generally columnar/cuboidal, there are certainly well studied cases where it is not (e.g.- Rhodnius prolixus when starved). So it would be safer to add this as a differentium for particular species where this is known. -DSJ. is_a: CL:0000362 ! epidermal cell relationship: develops_from CL:0000464 ! epidermoblast [Term] id: CL:0000464 name: epidermoblast namespace: cell def: "An epidermal progenitor cell that arises from neuroectoderm and in turn gives rise to the epidermal sheath of ventral and cephalic regions." [GOC:tfm, PMID:7576311] xref: FBbt:00004994 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0000710 ! neurecto-epithelial cell is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryonic structure relationship: develops_from CL:0000114 ! surface ectodermal cell relationship: part_of UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo relationship: part_of UBERON:0007376 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! outer epithelial layer [Term] id: CL:0000465 name: cardioblast (sensu Arthropoda) namespace: cell xref: FBbt:00001666 is_a: CL:0000513 ! cardiac muscle myoblast [Term] id: CL:0000467 name: adrenocorticotropic hormone secreting cell namespace: cell alt_id: CL:0000640 def: "A peptide hormone secreting cell that produces adrenocorticotropin, or corticotropin." [GOC:tfm, SANBI:mhl] synonym: "adrenocorticotrophic hormone secreting cell" EXACT [] synonym: "corticotrophin hormone secreting cell" RELATED [] synonym: "corticotropin hormone secreting cell" RELATED [] is_a: CL:0000167 ! peptide hormone secreting cell relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000468 name: neuroglioblast namespace: cell xref: FBbt:00005147 is_a: CL:0000047 ! neuronal stem cell is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0000031 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! neuroblast [Term] id: CL:0000469 name: ganglion mother cell namespace: cell xref: FBbt:00005149 is_a: CL:0000468 ! neuroglioblast relationship: develops_from CL:0000031 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! neuroblast [Term] id: CL:0000470 name: digestive enzyme secreting cell namespace: cell is_a: CL:0000154 ! protein secreting cell relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive system relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! digestive system [Term] id: CL:0000472 name: chlorenchyma cell namespace: cell def: "Obsolete. Use PO:0000076 from Plant Ontology instead. OBSOLETE, use term from Plant Ontology. Parenchyma cells containing chloroplasts; a component of leaf mesophyll and other green parenchyma tissue." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000076 [Term] id: CL:0000473 name: defensive cell namespace: cell def: "A cell whose primary function is to protect the organism." [JB:jb] is_a: CL:0000144 ! cell by function [Term] id: CL:0000474 name: pericardial cell namespace: cell def: "Cell which forms the outer layer of the dorsal vessel within the abdomen of the fly larvae. These cells sequester macromolecules from the hemolymph." [FBbt:00003184, GOC:tfm, PMID:19783135] xref: FBbt:00003184 is_a: CL:0000519 ! phagocyte (sensu Nematoda and Protostomia) is_a: CL:0002520 ! nephrocyte relationship: part_of UBERON:0001009 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! circulatory system relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: CL:0000475 name: degenerate megaspore namespace: cell def: "Obsolete. Use PO:0000245 from Plant Ontology instead. In monosporic and bisporic megasporogenesis: the megaspore(s) that do not participate in megagametogenesis." [TAIR:lr] is_obsolete: true comment: replaced_by: PO:0000245 [Term] id: CL:0000476 name: thyrotroph namespace: cell def: "A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin. This cell type is elongated, polygonal and lie in clusters towards the adenohypophyseal center." [ISBN:0517223651, SANBI:mhl] synonym: "beta-basophil" EXACT [] synonym: "thyroid stimulating hormone secreting cell" EXACT [] synonym: "thyrotrope" EXACT [] xref: FMA:83099 is_a: CL:0000639 ! basophil cell of pars distalis of adenohypophysis [Term] id: CL:0000477 name: follicle cell namespace: cell xref: FBbt:00004904 is_a: CL:0000075 ! columnar/cuboidal epithelial cell relationship: develops_from CL:0000441 ! follicle stem cell relationship: part_of UBERON:0000992 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! female gonad relationship: part_of UBERON:0003199 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! egg chamber [Term] id: CL:0000478 name: oxytocin stimulating hormone secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes oxytocin stimulating hormone" [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000479 name: vasopressin stimulating hormone secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes vasopressin stimulating hormone" [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000480 name: secretin stimulating hormone secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes secretin stimulating hormone" [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000481 name: cholecystokin stimulating hormone secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes cholecystokin stimulating hormone" [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000482 name: juvenile hormone secreting cell namespace: cell def: "An endocrine cell that secretes juvenile hormone." [GO:tfm] is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000483 name: bombesin stimulating hormone secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes cholecystokin stimulating hormone" [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000484 name: connective tissue type mast cell namespace: cell def: "Mast cell subtype whose granules contain both the serine proteases tryptase and chymase. These cells are primarily found in connective tissue, such as the peritoneal cavity, skin, and intestinal submucosa. Their development is T-cell independent." [GOC:add, GOC:dsd, GOC:tfm, PMID:19923473, PMID:9354811] comment: They are CD88-positive. The cytoplasmic granules contain high levels of histamine and heparin (mouse) or major neutral proteases, tryptase, chymase, carboxypeptidase A, and cathepsin G (humans). Reportedly, they cannot produce leukotrienes (LTC4) and IL-4. They are reportedly very heterogeneous depending upon location and can convert to the MC(T) phenotype. synonym: "MC(TC)" EXACT [] synonym: "MCTC" EXACT [] synonym: "TC mast cells" EXACT [] is_a: CL:0000097 ! mast cell [Term] id: CL:0000485 name: mucosal type mast cell namespace: cell def: "Mast cell subtype that contains only the serine protease trypase in its granules. These cells are primarily found in mucosal tissue, such as intestinal mucosa and alveoli. They depend upon T-cells for development of phenotype." [GOC:add, GOC:dsd, PMID:19923473, PMID:9354811] comment: They are CD88-negative. The cytoplasmic granules contain low levels of histamine and high levels of chondroitin sulfate (mouse) or major neutral proteases and tryptase (humans). Additionally, they can produce leukotrienes (LTC4), IL-5, IL-6, and low levels of IL-4. They are reportedly very heterogeneous depending upon location and can convert to the MC(T) phenotype. synonym: "MC(T)" EXACT [] synonym: "MCT" EXACT [] synonym: "T mast cells" EXACT [] is_a: CL:0000097 ! mast cell [Term] id: CL:0000486 name: garland cell namespace: cell def: "A large binucleate cell that forms a 'garland' around the anterior end of the proventriculus (cardia) at its junction with the esophagus in both adults and larvae flies. Each cell is surrounded by a basement membrane and there are numerous micro-invaginations (lacunae) extending from the surface into the cytoplasm. At the mouth of each lacuna is a doubled filament forming a specialised filtration system (diaphragm). The filtrate is endocytosed from the lacunae." [GOC:tfm, PMID:19783135, fbbt:00005059] xref: BTO:0004596 xref: FBbt:00005059 is_a: CL:0000227 ! binucleate cell is_a: CL:0000519 ! phagocyte (sensu Nematoda and Protostomia) is_a: CL:0002520 ! nephrocyte relationship: part_of UBERON:0001009 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! circulatory system [Term] id: CL:0000487 name: oenocyte namespace: cell def: "A large secretory cell found in clusters underlying the epidermis of the abdominal segments of larval abdominal segments." [GOC:bf, PMID:11171397] xref: FBbt:00004995 is_a: CL:0000151 ! secretory cell relationship: part_of UBERON:0007376 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! outer epithelial layer [Term] id: CL:0000488 name: visible light photoreceptor cell namespace: cell def: "A photoreceptor cell that detects visible light." [GOC:tfm] is_a: CL:0000210 ! photoreceptor cell [Term] id: CL:0000489 name: scotopic photoreceptor cell namespace: cell is_a: CL:0000210 ! photoreceptor cell [Term] id: CL:0000490 name: photopic photoreceptor cell namespace: cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000491 name: cytotoxic T cell namespace: cell def: "OBSOLETE: A cell responsible for spontaneous cytotoxicity of a variety of tumor cells without prior immunization. These natural killer cells are found in non-immune humans and experimental animals and are thought by some to be the same as killer cells (killing by antibody-dependent cell cytotoxicity), but they can also kill in the absence of antibody." [] is_obsolete: true comment: This term had an incorrect definition and was overly broad. Consider using 'cytotoxic T cell ; CL:0000910' (in most cases) or another lymphocyte cell type if cytotoxicity is shown to be part of the cell's phenotype in a particular experimental situation. [Term] id: CL:0000492 name: CD4-positive helper T cell namespace: cell def: "A CD4-positive, alpha-beta T cell that cooperates with other lymphocytes via direct contact or cytokine release to initiate a variety of immune functions." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, ISBN:0781735149, MESH:A.11.118.637.555.567.569.200.400] synonym: "CD4-positive T-helper cell" EXACT [] synonym: "CD4-positive helper T lymphocyte" EXACT [] synonym: "CD4-positive helper T-cell" EXACT [] synonym: "CD4-positive helper T-lymphocyte" EXACT [] xref: FMA:70572 is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0000493 name: regulatory T cell namespace: cell def: "OBSOLETE: Subpopulation of CD4+ cells which induce CD8+ suppressor T cells to suppress antibody production by B cells. They also stimulate other cellular immune responses." [] is_obsolete: true comment: This term was defined too narrowly; consider using the term 'regulatory T cell ; CL:0000815' instead. [Term] id: CL:0000494 name: UV sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that detects ultraviolet light." [GOC:tfm] is_a: CL:0000210 ! photoreceptor cell [Term] id: CL:0000495 name: blue sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that is sensitive to blue light." [GO:tfm] is_a: CL:0000490 ! photopic photoreceptor cell [Term] id: CL:0000496 name: green sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that is sensitive to green light." [GO:tfm] is_a: CL:0000490 ! photopic photoreceptor cell [Term] id: CL:0000497 name: red sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that is sensitive to red light." [GO:tfm] is_a: CL:0000490 ! photopic photoreceptor cell [Term] id: CL:0000498 name: inhibitory interneuron namespace: cell def: "An interneuron (also called relay neuron, association neuron or local circuit neuron) is a multipolar neuron which connects afferent neurons and efferent neurons in neural pathways. Like motor neurons, interneuron cell bodies are always located in the central nervous system (CNS)." [GOC:tfm, http://en.wikipedia.org/wiki/Interneuron] xref: FMA:84776 is_a: CL:0000099 ! interneuron [Term] id: CL:0000499 name: stromal cell namespace: cell def: "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830] xref: BTO:0002064 xref: FMA:83624 is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000134 ! mesenchymal cell [Term] id: CL:0000500 name: follicular epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000501 name: granulosa cell namespace: cell def: "A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [MESH:A.05.360.319.114.630.535.200] synonym: "granulosa cell of ovary" EXACT [] xref: BTO:0000542 xref: FMA:18718 is_a: CL:0000174 ! steroid hormone secreting cell is_a: CL:0002174 ! follicular cell of ovary [Term] id: CL:0000502 name: type D enteroendocrine cell namespace: cell def: "A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin." [MESH:A.03.492.766.440.175] synonym: "D cell" EXACT [] xref: FMA:62935 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000172 ! somatostatin secreting cell relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive system [Term] id: CL:0000503 name: theca cell namespace: cell def: "A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precusors of estrogens in the granulosa cells." [MESH:A.05.360.319.114.630.535.400] xref: BTO:0002850 xref: FMA:18690 is_a: CL:0000499 ! stromal cell is_a: CL:0000593 ! androgen secreting cell [Term] id: CL:0000504 name: enterochromaffin-like cell namespace: cell def: "A enteroendocrine cell part of the glands of the gastric mucosa. They produce histamine and peptides such as chromogranins. This cell type respond to gastrin by releasing histamine which acts as a paracrine stimulator of the release of hydrochloric acid from the gastric parietal cells." [GOC:tfm, MESH:A.06.224.365] comment: Consider enterochromaffin cell (CL:0002065). For several years this cell type was \"enterochromaffin cell\" despite a MESH dbxref and a free text definition that clearly meant enterochromaffin-like cell. synonym: "ECL" EXACT [] xref: BTO:0002692 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0002274 ! histamine secreting cell [Term] id: CL:0000505 name: substance P secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes substance P." [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000506 name: enkephalin secreting cell namespace: cell def: "An endorphine cell that secretes enkephalin." [GO:tfm] is_a: CL:0000507 ! endorphin secreting cell [Term] id: CL:0000507 name: endorphin secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes endorphin." [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000508 name: type G enteroendocrine cell namespace: cell def: "An endocrine cell found in the pyloric gland mucosa (antral mucosa) of the stomach of mammals and responsible for the secretion of gastrin and enkephalin. Most abundant in pyloric antrum, pyramidal in form with a narrow apex bearing long microvilli." [GOC:tfm, ISBN:0517223651, MESH:A.03.492.766.440.300] synonym: "G cell " EXACT [] xref: BTO:0004108 xref: FMA:67609 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000506 ! enkephalin secreting cell is_a: CL:0000509 ! gastrin secreting cell [Term] id: CL:0000509 name: gastrin secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes gastrin." [GO:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000510 name: paneth cell namespace: cell def: "An epithelial cell found in the basal part of the intestinal glands (crypts of Lieberkuhn) including the appendix. Paneth cells synthesize and secrete lysozyme and cryptdins. Numerous in the deeper parts of the intestinal crypts, particularly in the duodenum, rich in zinc, contain large acidophilic granules, with irregular apical microvilli and prominent membrane-bound vacuoles containing matrix." [GOC:tfm, ISBN:0517223651, MESH:A.03.492.411.369.700] xref: BTO:0000993 xref: FMA:62897 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000323 ! lysozyme secreting cell is_a: CL:0002563 ! intestinal epithelial cell [Term] id: CL:0000511 name: androgen binding protein secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes androgen binding protein." [GO:tfm] is_a: CL:0000154 ! protein secreting cell [Term] id: CL:0000512 name: paracrine cell namespace: cell def: "A paracrine cell is a secretory cell that secretes an agonist into intercellular spaces in which it diffuses to a target cell other than that which produced it." [GOC:tfm, ISBN:0198529171] is_a: CL:0000151 ! secretory cell [Term] id: CL:0000513 name: cardiac muscle myoblast namespace: cell alt_id: CL:0000714 def: "A precursor cell destined to differentiate into cardiac muscle cell." [GOC:tfm, MESH:A.11.635.470] xref: FMA:84797 is_a: CL:0000056 ! myoblast [Term] id: CL:0000514 name: smooth muscle myoblast namespace: cell def: "A precursor cell destined to differentiate into smooth muscle myocytes." [GOC:tfm, MESH:A.11.635.510, MESH:D032390] synonym: "myoblast, smooth muscle" EXACT [MESH:D032390] synonym: "satellite cell" RELATED [] xref: FMA:84798 is_a: CL:0000056 ! myoblast [Term] id: CL:0000515 name: skeletal muscle myoblast namespace: cell def: "A myoblast that differentiates into skeletal muscle fibers." [SANBI:mhl] synonym: "skeletal myoblast" EXACT [] xref: FMA:84799 is_a: CL:0000056 ! myoblast [Term] id: CL:0000516 name: perineuronal satellite cell namespace: cell def: "A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia." [GOC:tfm, MESH:A.08.340.685] synonym: "perineural satellite cell" EXACT [] synonym: "perineuronal satellite oligodendroglial cell" EXACT [] synonym: "satellite oligodendrocyte" EXACT [] xref: FMA:54550 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) is_a: CL:0000243 ! glial cell (sensu Vertebrata) relationship: develops_from CL:0000339 ! glioblast (sensu Vertebrata) [Term] id: CL:0000517 name: macrophage derived foam cell namespace: cell def: "A type of foam cell derived from a macrophage containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions." [GOC:add, PMID:20213546] is_a: CL:0000891 ! foam cell relationship: develops_from CL:0000235 ! macrophage [Term] id: CL:0000518 name: phagocyte (sensu Vertebrata) namespace: cell def: "A phagocyte in vertebrates that is able to phagocytosis." [GOC:tfm] is_a: CL:0000234 ! phagocyte [Term] id: CL:0000519 name: phagocyte (sensu Nematoda and Protostomia) namespace: cell def: "A phagocyte from organisms in the Nematoda or Protostomia clades." [GOC:tfm] is_a: CL:0000234 ! phagocyte [Term] id: CL:0000520 name: prokaryotic cell namespace: cell is_a: CL:0000004 ! cell by organism [Term] id: CL:0000521 name: fungal cell namespace: cell is_a: CL:0000255 ! eukaryotic cell [Term] id: CL:0000522 name: spore namespace: cell def: "The reproductive structure of bacteria, fungi and cryptograms." [ISBN:08199377X] is_obsolete: true [Term] id: CL:0000523 name: mononuclear cytotrophoblast cell namespace: cell def: "A cell from the inner layer of the trophoblast of the early mammalian embryo that gives rise to the outer surface and villi of the chorion. Mononuclear crytoblasts fuse to give rise to a multinuclear cytotrophoblast." [GOC:tfm, ISBN:0323052908] synonym: "Langhans' cell" EXACT [] xref: FMA:83042 is_a: CL:0000351 ! trophoblast cell [Term] id: CL:0000524 name: spheroplast namespace: cell def: "A cell, usually of bacteria or yeast, which has partially lost its cell wall." [MESH:A.11.868] synonym: "sphaeroplast" EXACT [] is_a: CL:0000371 ! protoplast [Term] id: CL:0000525 name: syncytiotrophoblast cell namespace: cell def: "A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo. It It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy." [GOC:tfm, ISBN:0323052908] synonym: "plasmidotrophoblast" EXACT [] synonym: "syncytial trophoblast" EXACT [] synonym: "syntrophoblast" EXACT [] xref: FMA:83043 is_a: CL:0000228 ! multinucleate cell is_a: CL:0000351 ! trophoblast cell [Term] id: CL:0000526 name: afferent neuron namespace: cell def: "A neuron which conveys sensory information centrally from the periphery." [GOC:tfm, MESH:A.08.663.650] synonym: "input neuron" EXACT [] xref: FMA:87653 is_a: CL:0000540 ! neuron is_a: CL:0000029 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neuron neural crest derived [Term] id: CL:0000527 name: efferent neuron namespace: cell def: "A neuron which sends impulses peripherally to activate muscles or secretory cells." [MESH:A.08.663.655] synonym: "output neuron" EXACT [] is_a: CL:0000540 ! neuron is_a: CL:0000029 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neuron neural crest derived [Term] id: CL:0000528 name: nitrergic neuron namespace: cell def: "A nerve cell where transmission is mediated by nitric oxide." [MESH:A.08.663.748] xref: FMA:84792 is_a: CL:0000107 ! autonomic neuron [Term] id: CL:0000529 name: pigmented epithelial cell namespace: cell is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0000530 name: primary neuron namespace: cell is_a: CL:0000540 ! neuron relationship: part_of UBERON:0002346 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neurectoderm [Term] id: CL:0000531 name: primary sensory neuron namespace: cell is_a: CL:0000101 ! sensory neuron is_a: CL:0000530 ! primary neuron [Term] id: CL:0000532 name: CAP motoneuron namespace: cell is_a: CL:0000533 ! primary motor neuron [Term] id: CL:0000533 name: primary motor neuron namespace: cell xref: FMA:83619 is_a: CL:0000100 ! motor neuron is_a: CL:0000530 ! primary neuron [Term] id: CL:0000534 name: primary interneuron namespace: cell is_a: CL:0000099 ! interneuron is_a: CL:0000530 ! primary neuron [Term] id: CL:0000535 name: secondary neuron namespace: cell is_a: CL:0000540 ! neuron [Term] id: CL:0000536 name: secondary motor neuron namespace: cell xref: FMA:83620 is_a: CL:0000100 ! motor neuron is_a: CL:0000535 ! secondary neuron [Term] id: CL:0000537 name: antipodal cell namespace: cell def: "Obsolete. Use PO:0020093 from Plant Ontology instead. OBSOLETE, use term from plant ontology. A cell located at the chalazal end of the mature embryo sac in angiosperms." [ISBN:047125208] is_obsolete: true comment: replaced_by: PO:0020093 [Term] id: CL:0000538 name: epidermal initial namespace: cell def: "Obsolete. Use PO:0000349 from Plant Ontology instead. A relatively unspecialized cell that will give rise to specialized cell types of the epidermis." [TAIR:lr] is_obsolete: true comment: replaced_by: PO:0000349 [Term] id: CL:0000539 name: idioblast namespace: cell def: "A cell in a tissue that markedly differs in form, size, or contents from other cells in the same tissue." [ISBN:0471245208] is_obsolete: true [Term] id: CL:0000540 name: neuron namespace: cell def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [MESH:A.08.663, MESH:D009474] comment: These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. synonym: "nerve cell" EXACT [] xref: BTO:0000938 xref: FBbt:00005106 xref: FMA:54527 xref: WBbt:0003679 is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000404 ! electrically signaling cell is_a: CL:0002319 ! neural cell relationship: develops_from CL:0000031 ! neuroblast relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! nervous system relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! nervous system relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! nervous system [Term] id: CL:0000541 name: melanoblast namespace: cell def: "A cell that originates from the neural crest and differentiates into a pigment cell." [GOC:tfm, SANBI:mhl] comment: Derived from UBERON:0002342 neural crest. xref: BTO:0003217 xref: FMA:83377 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0000710 ! neurecto-epithelial cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0000542 name: lymphocyte namespace: cell def: "A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149] xref: BTO:0000775 xref: FMA:62863 is_a: CL:0000738 ! leukocyte is_a: CL:0000842 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mononuclear cell relationship: develops_from CL:0000051 ! common lymphoid progenitor relationship: part_of UBERON:0002405 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! immune system [Term] id: CL:0000543 name: sieve tube member namespace: cell def: "Obsolete. Use PO:0000289 from Plant Ontology instead. One of the series of cellular components of a sieve tube. It shows a more or less pronounced differentiation between sieve plates (wide pores) and lateral sieve areas (narrow pores). Also sieve tube element and the obsolete sieve tube segment." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000289 synonym: "sieve tube element" EXACT [] [Term] id: CL:0000544 name: slowly adapting mechanoreceptor cell namespace: cell is_a: CL:0000199 ! mechanoreceptor cell [Term] id: CL:0000545 name: T-helper 1 cell namespace: cell def: "A CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive and produces interferon-gamma." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19375293, PMID:20303875] synonym: "Th1 T cell" EXACT [] synonym: "Th1 T lymphocyte" EXACT [] synonym: "Th1 T-cell" EXACT [] synonym: "Th1 T-lymphocyte" EXACT [] synonym: "Th1 cell" EXACT [] synonym: "helper T cell type 1" EXACT [] xref: BTO:0001678 xref: FMA:84382 is_a: CL:0000492 ! CD4-positive helper T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0000546 name: T-helper 2 cell namespace: cell def: "A CD4-positive, alpha-beta T cell that has the phenotype GATA-3-positive and produces interleukin-4." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19375293, PMID:20103781] synonym: "Th2 T cell" EXACT [] synonym: "Th2 T lymphocyte" EXACT [] synonym: "Th2 T-cell" EXACT [] synonym: "Th2 T-lymphocyte" EXACT [] synonym: "Th2 cell" EXACT [] synonym: "helper T cell type 2" EXACT [] xref: BTO:0001679 xref: FMA:84385 is_a: CL:0000492 ! CD4-positive helper T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0000547 name: proerythroblast namespace: cell def: "An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers." [ISBN:0721601464, MESH:A.11.118.290.350.200, PMID:1638021] synonym: "pronormoblast" RELATED [] synonym: "rubriblast" EXACT [ISBN:0721601464] xref: FMA:83518 is_a: CL:0000764 ! erythroid lineage cell relationship: develops_from CL:0000038 ! erythroid progenitor cell [Term] id: CL:0000548 name: animal cell namespace: cell is_a: CL:0000255 ! eukaryotic cell [Term] id: CL:0000549 name: basophilic erythroblast namespace: cell def: "A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers." [GOC:tfm, ISBN:0721601464] synonym: "basophilic normoblast" EXACT [ISBN:0721601464] synonym: "early erythroblast" EXACT [ISBN:0721601464] synonym: "early normoblast" EXACT [ISBN:0721601464] synonym: "prorubricyte" EXACT [ISBN:0721601464] xref: FMA:83505 is_a: CL:0000765 ! erythroblast relationship: develops_from CL:0000547 ! proerythroblast [Term] id: CL:0000550 name: polychromatophilic erythroblast namespace: cell def: "A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers." [ISBN:0721601464] synonym: "intermediate erythroblast" EXACT [ISBN:0721601464] synonym: "intermediate normoblast" EXACT [ISBN:0721601464] synonym: "polychromatic erythroblast" EXACT [ISBN:0721601464] synonym: "polychromatic normoblast" EXACT [ISBN:0721601464] synonym: "polychromatophilic normoblast" EXACT [ISBN:0721601464] synonym: "rubricyte" EXACT [ISBN:0721601464] xref: FMA:83506 is_a: CL:0000765 ! erythroblast relationship: develops_from CL:0000549 ! basophilic erythroblast [Term] id: CL:0000551 name: unimodal nocireceptor namespace: cell is_a: CL:0000198 ! pain receptor cell [Term] id: CL:0000552 name: orthochromatic erythroblast namespace: cell def: "The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated." [ISBN:0721601464] synonym: "acidophilic erythroblast" EXACT [ISBN:0721601464] synonym: "eosinophilic erythroblast" EXACT [ISBN:0721601464] synonym: "late erythoblast" EXACT [] synonym: "orthochromatic normoblast" EXACT [ISBN:0721601464] synonym: "pyknotic eto enrythroblast" EXACT [ISBN:0721601464] xref: FMA:84646 is_a: CL:0000765 ! erythroblast relationship: develops_from CL:0000550 ! polychromatophilic erythroblast [Term] id: CL:0000553 name: megakaryocyte progenitor cell namespace: cell def: "The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative)." [GOC:dsd, GOC:tfm, ISBN:0721601464] comment: Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative. synonym: "CFU-Meg" EXACT [PMID:11722431, PMID:12482498] synonym: "Meg-CFC" EXACT [PMCID:PMC1794060] synonym: "colony-forming unit-megakaryocyte" EXACT [] synonym: "megacaryoblast" EXACT [] synonym: "megacaryocyte progenitor cell" EXACT [] synonym: "megakaryoblast" EXACT [] synonym: "megakaryocytic progenitor cell" EXACT [PMID:12482498] synonym: "promegacaryocyte" RELATED [] synonym: "promegakaryocyte" RELATED [] xref: BTO:0001164 xref: FMA:84235 is_a: CL:0000839 ! myeloid lineage restricted progenitor cell relationship: develops_from CL:0000050 ! megakaryocyte-erythroid progenitor cell [Term] id: CL:0000554 name: gastrin stimulating hormone secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes gastrin stimulating hormone." [GOC:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000555 name: neuronal brush cell namespace: cell is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000556 name: megakaryocyte namespace: cell def: "A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm." [ISBN:0721601464, MESH:D008533] comment: Megakaryocytes are reportedly CD181-positive and CD182-positive. synonym: "megacaryocyte" EXACT [] synonym: "megalocaryocyte" EXACT [] synonym: "megalokaryocyte" EXACT [] xref: BTO:0000843 xref: FMA:83555 is_a: CL:0000763 ! myeloid cell relationship: develops_from CL:0000553 ! megakaryocyte progenitor cell [Term] id: CL:0000557 name: granulocyte monocyte progenitor cell namespace: cell def: "A hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages. These cells are CD123-positive, and do not express Gata-1, Gata2 but do express C/EBPa, and Pu.1." [GOC:amm, GOC:dsd, GOC:tfm, GO_REF:0000031, ISBN:0721601464, MESH:D055014, PMCID:PMC2213186, PMCID:PMC548021, PMID:16551251, http://www.copewithcytokines.de] comment: Originally described in the dendritic cell ontology (DC_CL:0000042)(PMID: 19243617). GMPs are reportedly CD34-positive, CD38-positive, CD45RA-positive, and CD123-positive. synonym: "CFU-C , Colony forming unit in culture" BROAD [http://www.copewithcytokines.de] synonym: "CFU-GM" EXACT [ISBN:0721601464, PMCID:PMC2213186, PMCID:PMC548021] synonym: "GMP" EXACT [ISBN:0721601464, PMCID:PMC2213186, PMCID:PMC548021] synonym: "colony forming unit granulocyte macrophage" EXACT [ISBN:0721601464, PMCID:PMC2213186, PMCID:PMC548021] synonym: "granulocyte-macrophage progenitor" EXACT [ISBN:0721601464, PMCID:PMC2213186, PMCID:PMC548021] is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell is_a: CL:0000839 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! myeloid lineage restricted progenitor cell relationship: develops_from CL:0000049 ! common myeloid progenitor [Term] id: CL:0000558 name: reticulocyte namespace: cell def: "An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds." [GOC:add, GOC:tfm, PMID:15946868, PMID:2037622] xref: BTO:0001173 is_a: CL:0000764 ! erythroid lineage cell is_a: CL:0000081 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blood cell relationship: develops_from CL:0000552 ! orthochromatic erythroblast [Term] id: CL:0000559 name: promonocyte namespace: cell def: "A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. This cell is CD11b-positive and has fine azurophil granules." [GOC:tfm, ISBN:0721601464, http://www.clt.astate.edu/wwilliam/] comment: Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid. xref: BTO:0004657 xref: FMA:83551 is_a: CL:0002194 ! monopoietic cell relationship: develops_from CL:0000040 ! monoblast [Term] id: CL:0000560 name: band form neutrophil namespace: cell def: "A late neutrophilic metamyelocyte in which the nucleus is indented to more than half the distance to the farthest nuclear margin but in no area being condensed to a single filament. The nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil. These cells are fMLP receptor-positive, CD11b-positive, CD35-negative, and CD49d-negative." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, PMID:10618520, PMID:12560239, PMID:15514007, http://www.cap.org] comment: They are found in the Band 1 fraction. synonym: "band" BROAD [] synonym: "band cell" BROAD [] synonym: "band form" BROAD [] synonym: "rod neutrophil" EXACT [] synonym: "stab cell" BROAD [] is_a: CL:0000776 ! immature neutrophil relationship: develops_from CL:0000582 ! neutrophilic metamyelocyte [Term] id: CL:0000561 name: amacrine cell namespace: cell def: "Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. They lack large axons." [GOC:tfm, MESH:A.08.663.358.050] comment: Not clear if this term overlaps with retinal bipolar neuron (CL:0000748). synonym: "amacrine neuron" EXACT [] xref: BTO:0004044 xref: FBbt:00005127 xref: FMA:67766 is_a: CL:0000099 ! interneuron relationship: part_of UBERON:0001791 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! inner nuclear layer of retina relationship: part_of UBERON:0003902 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! retinal neural layer relationship: part_of UBERON:0006795 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! arthropod optic lobe [Term] id: CL:0000562 name: nucleate erythrocyte namespace: cell def: "An erythrocyte having a nucleus." [GOC:add, GOc:tfm] synonym: "RBC" BROAD [] synonym: "red blood cell" BROAD [] is_a: CL:0000232 ! erythrocyte is_a: CL:0000081 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blood cell relationship: develops_from CL:0002421 ! nucleated reticulocyte [Term] id: CL:0000563 name: endospore namespace: cell def: "A rounded, inactive form that certain bacteria assume under conditions of extreme temperature, dryness, or lack of food. The bacterium develops a waterproof cell wall that protects it from being dried out or damaged." [GOC:tfm, ISBN:0618947256] synonym: "bacterial spore" EXACT [] xref: BTO:0002779 is_a: CL:0000520 ! prokaryotic cell [Term] id: CL:0000564 name: neutrophilic promyelocyte namespace: cell def: "A promyelocyte committed to the neutrophil lineage. This cell type is GATA-1-positive, C/EBPa-positive, AML-1-positive, MPO-positive, has low expression of PU.1 transcription factor and lacks lactotransferrin expression." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, PMID:12560239, PMID:15514007] comment: These cells are CD11b-negative, CD15-positive, CD16-negative, CD49d-positive, CD68-positive, CD35-negative, and fMLP receptor-negative. They are found in the Band 3 fraction. synonym: "neutrophilic premyelocyte" EXACT [] synonym: "neutrophilic progranulocyte" EXACT [] xref: FMA:84196 is_a: CL:0000836 ! promyelocyte relationship: develops_from CL:0000042 ! neutrophilic myeloblast [Term] id: CL:0000565 name: fat body cell namespace: cell def: "A cell whose primary function is intermediary metabolism." [FB:ma] is_a: CL:0000181 ! metabolising cell [Term] id: CL:0000566 name: angioblastic mesenchymal cell namespace: cell def: "A mesenchymal stem cell capable of developing into blood vessel endothelium." [GOC:dsd, GOC:tfm, PMID:12768659] comment: These cells are reportedly CD31-positive, CD34-positive, CD144-positive, CD309-positive, and TAL1-positive. synonym: "angioblast" EXACT [] synonym: "chondroplast" EXACT [] is_a: CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000134 ! mesenchymal cell [Term] id: CL:0000567 name: polymodal nocireceptor namespace: cell is_a: CL:0000198 ! pain receptor cell [Term] id: CL:0000568 name: APUD cell namespace: cell def: "A cell that originates in the neural crest, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the cells of the chromaffin system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, lungs, gastrointestinal tract, and pancreas. This cell type concentrates the amino acid precursors of certain amines and decarboxylate them, forming amines that function as regulators and neurotransmitters. This cell type produces substances such as epinephrine, norepinephrine, dopamine, serotonin, enkephalin, somatostatin, neurotensin, and substance P, the actions of which may affect contiguous cells, nearby groups of cells, or distant cells, thus functioning as local or systemic hormones. The name is an acronym for amine precursor uptake and decarboxylation cell." [GOC:tfm, ISBN:0721662544, MESH:A.11.070] synonym: "amine precursor uptake and decarboxylation cell" EXACT [] xref: BTO:0003866 xref: FMA:83114 is_a: CL:0000165 ! neuroendocrine cell [Term] id: CL:0000569 name: cardiac mesenchymal cell namespace: cell def: "A mesenchymal cell found in the developing heart." [PMID:18816864] is_a: CL:0000134 ! mesenchymal cell relationship: develops_from CL:0000011 ! trunk neural crest cell [Term] id: CL:0000570 name: parafollicular cell namespace: cell def: "A neuroepithelial cells that occurs singly or in small groups, close to the outer follicular borders but within the follicular basement membrane of the thyroid. Expresses a form of the neural cell adhesion molecule (N-CAM) on their surface. Secrets calcitonin, 5-hydroxytryptamine and dopamine." [GOC:tfm, ISBN:0517223651] synonym: "C cell" EXACT [] xref: FMA:68653 is_a: CL:0000443 ! calcitonin secreting cell is_a: CL:0000710 ! neurecto-epithelial cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0000571 name: leucophore namespace: cell def: "A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light." [SANBI:mhl] is_a: CL:0000147 ! pigment cell relationship: develops_from CL:0005003 ! leucoblast relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument [Term] id: CL:0000573 name: retinal cone cell namespace: cell def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." [MESH:A.08.663.650.650.670.100] xref: BTO:0001036 xref: FMA:67748 is_a: CL:0000287 ! eye photoreceptor cell relationship: develops_from CL:0002672 ! retinal progenitor cell [Term] id: CL:0000574 name: erythrophore namespace: cell def: "A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance." [SANBI:mhl] is_a: CL:0000147 ! pigment cell relationship: develops_from CL:0005004 ! pigment erythroblast relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument [Term] id: CL:0000575 name: corneal epithelial cell namespace: cell alt_id: CL:1000431 def: "An epithelial cell of the cornea." [GOC:tfm] synonym: "epithelial cell of cornea" EXACT [FMA:70551] xref: BTO:0004298 xref: FMA:70551 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0002159 ! general ecto-epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000576 name: monocyte namespace: cell def: "Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells." [GO_REF:0000031, MESH:A.11.118.637.555.652, http://www.clt.astate.edu/wwilliam/] comment: Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid. xref: BTO:0000876 xref: FMA:62864 is_a: CL:0000766 ! myeloid leukocyte is_a: CL:0000113 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mononuclear phagocyte is_a: CL:0000145 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! professional antigen presenting cell relationship: develops_from CL:0000559 ! promonocyte [Term] id: CL:0000577 name: type EC enteroendocrine cell namespace: cell alt_id: CL:0002065 def: "A subtype of enteroendocrine cells found in the gastrointestinal mucosa, particularly in the glands of pyloric antrum; duodenum; and ileum. These cell type secretes serotonin and some neurotransmitters including enkephalins and substance P. Their secretory granules stain readily with silver (argentaffin stain)." [MESH:A.03.492.766.440.250, PMID:9505449] synonym: "Kulchitsky cell" EXACT [] synonym: "argentaffin cell" EXACT [] synonym: "enterochromaffin cell" EXACT [] xref: FMA:62934 xref: FMA:83132 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000166 ! chromaffin cell is_a: CL:0000458 ! serotonin secreting cell is_a: CL:0000506 ! enkephalin secreting cell [Term] id: CL:0000578 name: experimentally modified cell in vitro namespace: cell def: "A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure." [FB:ma, ReO:mhb] comment: This class has been re-labeled to imply reference only to in vitro experimentally modified cells, similarly, the definition has been slightly updated to reflect this.experimentally modified cell' refers only to cells in vitro, and not modified in vivo/in environment cells . There is currently no class representing unmodified in vitro cells (other than the parent 'cell in vitro'), or a class representing modified native cells. More granular subclassing of experimentally modified cell can be found in ReO. MHB 1.12.12 is_a: CL:0001034 ! cell in vitro [Term] id: CL:0000579 name: border follicle cell namespace: cell xref: FBbt:00004905 is_a: CL:0000477 ! follicle cell [Term] id: CL:0000580 name: neutrophilic myelocyte namespace: cell def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and neutrophil-specific granules has started. No nucleolus is present. This cell type is CD13-positive, CD16-negative, integrin alpha-M-positive, CD15-positive, CD33-positive, CD24-positive, C/EBP-a-positive, C/EBPe-positive, PU.1-positive, lactotransferrin-positive, myeloperoxidase-positive and NGAL-positive." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, PMID:10618520, PMID:12560239, PMID:15514007, http://www.cap.org] comment: These cells are also CD15-positive, CD35-negative, CD49d-positive, and fMLP receptor-negative. They are found in the Band 2 fraction. xref: BTO:0003455 xref: FMA:83540 is_a: CL:0000776 ! immature neutrophil is_a: CL:0002193 ! myelocyte relationship: develops_from CL:0000564 ! neutrophilic promyelocyte [Term] id: CL:0000581 name: peritoneal macrophage namespace: cell def: "A macrophage resident in the peritoneum under non-inflammatory conditions. Markers include F4/80-high, CD11b-high, CD68-positive, SIGNR1-positive, CD115-high, MHC-II-negative, and Dectin-1-positive." [MESH:A.11.329.372.630, PMID:15771589, PMID:19201820] comment: Markers: Mouse: F4/80-high, CD11b-high, CD68+, SIGNR1+, Dectin-1+. xref: BTO:0001034 xref: FMA:83025 is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0000582 name: neutrophilic metamyelocyte namespace: cell def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare; and the cytoplasm becomes amphophilic like that of a mature granulocyte. This cell type is integrin alpha-M-positive, CD13-negative, CD15-positive, CD16-positive, CD33-positive, CD24-positive, fMLP receptor-negative and has expression of C/EBP-a, C/EBP-e, PU.1 transcription factor, lactotransferrin, myeloperoxidase and neutrophil gelatinase associated lipocalin." [GOC:add, GOC:dsd, GOC:tfm, ISBN:0721601464, PMID:10618520, PMID:12560239, PMID:15514007, http://www.cap.org] comment: These cells are also CD35-negative, CD49d-positive, and fMLP receptor-negative. They are found in the Band 2 fraction. synonym: "juvenile neutrophil" EXACT [] xref: FMA:84197 is_a: CL:0000776 ! immature neutrophil is_a: CL:0002192 ! metamyelocyte relationship: develops_from CL:0000580 ! neutrophilic myelocyte [Term] id: CL:0000583 name: alveolar macrophage namespace: cell def: "A tissue-resident macrophage found in the alveoli of the lungs. Ingests small inhaled particles resulting in degradation and presentation of the antigen to immunocompetent cells. Markers include F4/80-positive, CD11b-/low, CD11c-positive, CD68-positive, sialoadhesin-positive, dectin-1-positive, MR-positive, CX3CR1-negative." [GOC:ana, GOC:dsd, GOC:tfm, GO_REF:0000031, MESH:A.11.329.372.600] comment: Markers: Mouse: F4/80mid, CD11b-/low, CD11c+, CD68+, sialoadhesin+, dectin-1+, MR+, CX3CR1-. synonym: "MF.Lu" RELATED [] synonym: "dust cell" EXACT [] xref: BTO:0000802 xref: FMA:83023 is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0000584 name: enterocyte namespace: cell def: "An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen." [SANBI:mhl] xref: BTO:0000398 xref: FMA:62122 is_a: CL:0000239 ! brush border epithelial cell is_a: CL:0000677 ! gut absorptive cell is_a: CL:0002563 ! intestinal epithelial cell [Term] id: CL:0000585 name: null cell namespace: cell def: "OBSOLETE: A class of lymphocytes characterized by the lack of surface markers specific for either T or B cells." [] is_obsolete: true comment: This term is rather archaic; consider using 'natural killer cell ; CL:0000623', 'pro-B cell ; CL:0000826', 'pro-T cell ; CL:0000827', or other appropriate lymphocyte-related term depending on the context. [Term] id: CL:0000586 name: germ cell namespace: cell def: "The reproductive cell in multicellular organisms." [MESH:A.05.360.490] xref: BTO:0000535 xref: WBbt:0006796 is_a: CL:0000039 ! germ line cell [Term] id: CL:0000587 name: cold sensing thermoreceptor cell namespace: cell def: "A thermoreceptor cell that detects reduced temperatures." [GOC:tfm] is_a: CL:0000205 ! thermoreceptor cell [Term] id: CL:0000588 name: odontoclast namespace: cell def: "A specialized osteoclast associated with the absorption and removal of cementum." [GOC:add, MESH:A.11.329.679] xref: BTO:0002516 xref: FMA:83027 is_a: CL:0000092 ! osteoclast [Term] id: CL:0000589 name: cochlear inner hair cell namespace: cell def: "A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated." [MESH:A.08.663.650.250.250] synonym: "inner hair cell" BROAD [] xref: BTO:0003667 xref: FMA:62365 is_a: CL:0000202 ! auditory hair cell [Term] id: CL:0000590 name: small luteal cell namespace: cell def: "A progesterone secreting cell in the corpus luteum that develops from theca cells." [GOC:tfm, MESH:A.05.360.319.114.630.278.400] synonym: "small lutein cell" EXACT [] synonym: "theca lutein cell" EXACT [] xref: BTO:0002850 xref: FMA:18690 is_a: CL:0000175 ! luteal cell is_a: CL:0000179 ! progesterone secreting cell relationship: develops_from CL:0000503 ! theca cell [Term] id: CL:0000591 name: warmth sensing thermoreceptor cell namespace: cell def: "A thermoreceptor cell that detects reduced temperatures." [GOC:tfm] is_a: CL:0000205 ! thermoreceptor cell [Term] id: CL:0000592 name: large luteal cell namespace: cell def: "A large, progesterone secreting cell in the corpus luteum that develops from the granulosa cells." [GOC:tfm, MESH:A.05.360.319.114.630.278.400] synonym: "granulosa lutein cell" EXACT [] synonym: "granulosoluteocytus" RELATED [] xref: FMA:18689 is_a: CL:0000175 ! luteal cell is_a: CL:0000177 ! testosterone secreting cell relationship: develops_from CL:0000501 ! granulosa cell [Term] id: CL:0000593 name: androgen secreting cell namespace: cell def: "A steroid hormone secreting cell that secretes androgen." [GOC:tfm] is_a: CL:0000174 ! steroid hormone secreting cell [Term] id: CL:0000594 name: skeletal muscle satellite cell namespace: cell def: "An elongated, spindle-shaped, quiescent myoblast that are located between the basal lamina and the plasmalemma of the muscle fibres. They are thought to play a role in muscle repair and regeneration." [GOC:tfm, MESH:A.11.635.500.700] is_a: CL:0000035 ! single fate stem cell is_a: CL:0000188 ! skeletal muscle cell is_a: CL:0000680 ! muscle precursor cell is_a: CL:0000515 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! skeletal muscle myoblast [Term] id: CL:0000595 name: enucleate erythrocyte namespace: cell def: "An erythrocyte lacking a nucleus." [GOC:add, GOC:tfm] synonym: "RBC" BROAD [] synonym: "red blood cell" BROAD [] is_a: CL:0000232 ! erythrocyte relationship: develops_from CL:0002422 ! enucleated reticulocyte [Term] id: CL:0000596 name: sexual spore namespace: cell def: "A spore formed following meiosis. Sometimes following meiosis, prospores may undergo one or more rounds of mitosis before they are fully mature." [FAO:0000017, GOC:tfm, SGD:clt] synonym: "meiotically-derived spore" EXACT [] xref: FAO:0000017 is_a: CL:0002369 ! fungal spore [Term] id: CL:0000597 name: microconidium namespace: cell def: "The smaller of two types of asexual spores formed by some fungi. An ovoid to pear-shaped asexual spore that contains very little cytoplasm and organelles, is uninucleate, and forms in vegetative hypae within a mycelium. Micronidia are extruded from the hyphal cell wall." [GOC:tfm, ISBN:0471940526, PMID:8357339, SGD:clt] xref: FAO:0000028 is_a: CL:0002381 ! uninucleate conidium [Term] id: CL:0000598 name: pyramidal cell namespace: cell def: "A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region." [GOC:tfm, MESH:A.08.186.211.577.405.700] synonym: "projection neuron" EXACT [] synonym: "pyramidal neuron" EXACT [] xref: BTO:0003102 xref: FMA:67310 xref: FMA:86775 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000599 name: conidium namespace: cell def: "An asexual, nonmotile spore formed by higher fungi; conidia are usually made from the side or tip of specialized sporogenous cells and do not form by progressive cleavage of the cytoplasm." [ISBN:08199377X, PMID:2524423, PMID:9529886, SGD:clt] xref: BTO:0000283 xref: FAO:0000024 is_a: CL:0000605 ! fungal asexual spore [Term] id: CL:0000600 name: heterokaryon namespace: cell def: "A fungal cell with two or more genetically distinct nuclei." [ISBN:08199377X] is_a: CL:0000228 ! multinucleate cell is_a: CL:0000521 ! fungal cell [Term] id: CL:0000601 name: outer hair cell namespace: cell def: "A mechanoreceptor in the organ of Corti. In mammals the outer hair cells are arranged in three rows which are further from the modiolus than the single row of inner hair cells. The motile properties of the outer hair cells may contribute actively to tuning the sensitivity and frequency selectivity of the cochlea." [MESH:A.08.663.650.250.315] synonym: "cochlear outer hair cell" EXACT [] xref: BTO:0003666 xref: FMA:62366 is_a: CL:0000202 ! auditory hair cell [Term] id: CL:0000602 name: pressoreceptor cell namespace: cell def: "A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls." [MESH:A.08.800.050.800.900.700] is_a: CL:1000082 ! stretch receptor cell [Term] id: CL:0000603 name: dikaryon namespace: cell def: "A fungal cell with two genetically distinct haploid nuclei." [ISBN:08199377X] is_a: CL:0000227 ! binucleate cell is_a: CL:0000600 ! heterokaryon [Term] id: CL:0000604 name: retinal rod cell namespace: cell def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." [MESH:A.08.663.650.650.670.650] xref: BTO:0001024 xref: FMA:67747 is_a: CL:0000287 ! eye photoreceptor cell relationship: develops_from CL:0002672 ! retinal progenitor cell [Term] id: CL:0000605 name: fungal asexual spore namespace: cell def: "A spore formed following mitosis or mitoses." [GOC:tfm, PMID:2524423, PMID:9529886, SGD:clt] xref: FAO:0000023 is_a: CL:0002369 ! fungal spore [Term] id: CL:0000606 name: macroconidium namespace: cell def: "The larger of two types of asexual spores formed by some fungi; usually round or oblong." [GOC:tfm, ISBN:0471940526, SGD:clt] xref: FAO:0000038 is_a: CL:0000599 ! conidium [Term] id: CL:0000607 name: ascospore namespace: cell def: "A thick walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete." [GOC:tfm, ISBN:08199377X, SGD:clt] xref: BTO:0000097 xref: FAO:0000020 is_a: CL:0000596 ! sexual spore [Term] id: CL:0000608 name: zygospore namespace: cell def: "A thick walled, sexual, resting spore formed by Zygomycetes; sometimes refers to the spore and the multi-layered cell wall that encloses the spore, the zygosporangium." [ISBN:0471940526, ISBN:08199377X, SGD:clt] xref: FAO:0000040 is_a: CL:0000596 ! sexual spore [Term] id: CL:0000609 name: vestibular hair cell namespace: cell def: "A mechanoreceptor located in the acoustic maculae and the semicircular canals that mediates the sense of balance, movement, and head position. The vestibular hair cells are connected to accessory structures in such a way that movements of the head displace their stereocilia. This influences the membrane potential of the cells which relay information about movements via the vestibular part of the vestibulocochlear nerve to the brain stem." [GOC:tfm, MESH:A.08.663.650.250.380] synonym: "vestibular receptor cell" EXACT [] xref: FMA:62351 is_a: CL:0002374 ! ear hair cell [Term] id: CL:0000610 name: plant cell namespace: cell is_obsolete: true consider: PO:0009002 comment: This term was obsoleted as it is redundant with PO:0009002 in the cell ontology (PO) [Term] id: CL:0000611 name: eosinophil progenitor cell namespace: cell comment: These cells are CD34-positive, CD45RA-negative, CD71-negative, and lineage-negative (CD2, CD3 epsilon, CD4, CD5, CD8a, CD14, CD19, CD20, integrin alpha-M, NCAM-1, SCA-1, Ly6G, Ly76). synonym: "CFU-Eo" RELATED [] synonym: "EoP" EXACT [PMCID:PMC2212039, PMCID:PMC2626675] synonym: "colony forming unit eosinophil" RELATED [] synonym: "eosinophil stem cell" RELATED [] is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell [Term] id: CL:0000612 name: eosinophilic myelocyte namespace: cell def: "A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte;in this stage, production of primary granules is complete and eosinophil-specific granules has started. No nucleolus is present. These cells are integrin alpha-M-positive, CD13-positive, CD15-positive, CD16-negative, CD24-positive, and CD33-positive." [GOC:add, GOC:dsd, ISBN:0721601464, PMID:19622087, http://www.cap.org] xref: BTO:0003454 xref: FMA:83542 is_a: CL:0000772 ! immature eosinophil is_a: CL:0002193 ! myelocyte [Term] id: CL:0000613 name: basophil progenitor cell namespace: cell def: "A progenitor cell committed to the basophil lineage. This cell lacks hematopoietic lineage markers (lin-negative) and is CD34-positive, T1/ST2-low, CD117-negative, and FceRIa-high. This cell also expresses Gata-1, Gata-2 and C/EBPa." [GOC:add, GOC:dsd, PMCID:PMC1312421, http://www.copewithcytokines.de] comment: BaP are also CD13-low and integrin beta-7-low. They are lin-negative (CD2, CD3e, CD4, CD5, CD8, CD11b, CD14, CD19, CD20, ly6g, ly76, and NCAM-1). They also lack expression of mast cell protease 1 (MCP-1) and microphthalmia-associated transcription factor (mitf). synonym: "BaP" EXACT [] synonym: "CFU-Bas" RELATED [] synonym: "basophilic stem cell" RELATED [] synonym: "colony forming unit basophil" RELATED [] is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0002028 ! basophil mast progenitor cell [Term] id: CL:0000614 name: basophilic myelocyte namespace: cell def: "A basophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and basophil-specific granules has started. No nucleolus is present. Markers are being integrin alpha-M-positive, fucosyltransferase FUT4-positive, CD33-positive, CD24-positive, aminopeptidase N-positive." [GOC:add, GOC:tfm, ISBN:0721601464, PMID:18466030, http://www.cap.org] xref: BTO:0003456 xref: FMA:83543 is_a: CL:0000768 ! immature basophil relationship: develops_from CL:0000830 ! basophilic promyelocyte [Term] id: CL:0000615 name: basidiospore namespace: cell def: "A thick walled spore containing one or more haploid nuclei produced by sexual reproduction in an Basidiomycete; formed externally on extrusions of the basidium." [GOC:clt, ISBN:0471940526, ISBN:08199377X] xref: BTO:0002166 xref: FAO:0000021 is_a: CL:0000596 ! sexual spore [Term] id: CL:0000616 name: sporangiospore namespace: cell def: "A walled spore produced in a sporangium." [ISBN:08199377X] is_obsolete: true [Term] id: CL:0000617 name: GABAergic neuron namespace: cell def: "A neuron that uses GABA as a vesicular neurotransmitter" [GOC:tfm] synonym: "GABA-ergic neuron" EXACT [] xref: FMA:84788 xref: WBbt:0005190 is_a: CL:0000107 ! autonomic neuron [Term] id: CL:0000618 name: sheath cell namespace: cell is_a: CL:0000075 ! columnar/cuboidal epithelial cell [Term] id: CL:0000619 name: support cell (sensu Nematoda) namespace: cell is_a: CL:0000124 ! glial cell (sensu Nematoda and Protostomia) is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) [Term] id: CL:0000620 name: zoospore namespace: cell def: "A sporangiospore that is motile, having flagella." [ISBN:08199377X] is_obsolete: true xref: FAO:0000039 [Term] id: CL:0000621 name: fusion competent myoblast namespace: cell is_a: CL:0000056 ! myoblast [Term] id: CL:0000622 name: acinar cell namespace: cell def: "A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus)." [GOC:tfm, http://www.copewithcytokines.de] synonym: "acinic cell" EXACT [] synonym: "acinous cell" EXACT [] xref: FMA:83625 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000154 ! protein secreting cell relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! digestive system relationship: part_of UBERON:0001264 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pancreas [Term] id: CL:0000623 name: natural killer cell namespace: cell def: "A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [GOC:add, ISBN:0781735149, PMID:15771571] synonym: "NK cell" EXACT [] synonym: "large granular lymphocyte" BROAD [] synonym: "null cell" BROAD [] xref: BTO:0000914 xref: BTO:0004716 xref: FMA:63147 xref: FMA:83601 is_a: CL:0000542 ! lymphocyte relationship: develops_from CL:0000825 ! pro-NK cell [Term] id: CL:0000624 name: CD4-positive, alpha-beta T cell namespace: cell def: "A mature alpha-beta T cell that expresses an alpha-beta T cell receptor and the CD4 coreceptor." [GOC:add, ISBN:0781735149] synonym: "CD4-positive, alpha-beta T lymphocyte" EXACT [] synonym: "CD4-positive, alpha-beta T-cell" EXACT [] synonym: "CD4-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000791 ! mature alpha-beta T cell [Term] id: CL:0000625 name: CD8-positive, alpha-beta T cell namespace: cell def: "A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "CD8-positive, alpha-beta T lymphocyte" EXACT [] synonym: "CD8-positive, alpha-beta T-cell" EXACT [] synonym: "CD8-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000791 ! mature alpha-beta T cell [Term] id: CL:0000626 name: olfactory granule cell namespace: cell def: "Granule cell that is part of the olfactory bulb." [GOC:mah] is_a: CL:0000120 ! granule cell relationship: part_of UBERON:0002264 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory bulb [Term] id: CL:0000627 name: transporting cell namespace: cell def: "A cell involved in transporting nutrients, minerals, water, gases and other chemicals between cells for a variety of purposes including conveying nutrition to other tissues, removing waste products from the tissues, conveying gases for respiration, distributing heat and repelling invasion of foreign substances." [TAIR:sr] is_a: CL:0000144 ! cell by function [Term] id: CL:0000628 name: photosynthetic cell namespace: cell def: "A cell that can perform photosynthesis, in which carbohydrates are synthesized from carbon dioxide and water, using light as the energy source." [TAIR:sr] is_a: CL:0000144 ! cell by function [Term] id: CL:0000629 name: storage cell namespace: cell def: "A cell that is specialized to store a particular substance(s), which is(are) later released from the store for a particular purpose." [FB:ma] is_a: CL:0000325 ! stuff accumulating cell [Term] id: CL:0000630 name: supportive cell namespace: cell def: "A cell whose primary function is to support other cell types." [FB:ma, GOC:tfm] xref: BTO:0002315 xref: FMA:86947 xref: ZFA:0000688 is_a: CL:0000144 ! cell by function relationship: part_of UBERON:0000004 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory apparatus [Term] id: CL:0000631 name: labyrinth supporting cell namespace: cell def: "Cells forming a framework supporting the organ of Corti. Specific cells are those of Claudius, Deiters and Hensen." [MESH:A.09.246.631.246.577.543] is_a: CL:0000630 ! supportive cell [Term] id: CL:0000632 name: hepatic stellate cell namespace: cell def: "A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype, though it's not clear in the literature if this is terminally differentiated. This cell type comprises approximately 8-15% of total cells in the liver." [GOC:dsd, MESH:D055166, PMID:12808230, PMID:17239632, PMID:18222966, PMID:9302568] comment: Hepatic stellate cells are CD271-positive, desmin-positive, DDR-2-positive, GFAP-positive, synamin-positive, synaptophysin-positive, vimentin-positive, They are capable of producing angiotensin II, fibronectin, laminin, MMP-1, MMP-2, MMP-3, MMP-9, MMP-11, TGF-beta1, TIMP-1, TIMP-2, type I collagen, type III collagen, type IV collagen, and type VI collagen. synonym: "fat-storing cell" RELATED [] synonym: "hepatic perisinusoidal cell" EXACT [] synonym: "ito cell" EXACT [] synonym: "lipocyte" RELATED [] synonym: "perisinusoidal cell" EXACT [] synonym: "vitamin A-storing cells" RELATED [PMID:12808230] xref: BTO:0002741 xref: FMA:67763 is_a: CL:0000057 ! fibroblast is_a: CL:0000327 ! extracellular matrix secreting cell is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0000633 name: Hensen cell namespace: cell def: "A tall supporting cell that is arranged in rows adjacent to the last row of outer phalangeal cells. This cell type constitutes the outer border of the organ of Corti." [GOC:tfm, ISBN:0721662544] synonym: "Hensen's cell" EXACT [] synonym: "cell of Hensen" EXACT [] synonym: "external limiting cell of organ of Corti" EXACT [] xref: FMA:79799 is_a: CL:0002490 ! organ of Corti supporting cell [Term] id: CL:0000634 name: Claudius cell namespace: cell def: "A cuboidal cell which along with Boettcher's cells form the floor of the external spiral sulcus, external to the organ of Corti." [GOC:tfm, ISBN:0721662544] synonym: "cell of Claudius" EXACT [] synonym: "external supporting cell of Claudius" EXACT [] synonym: "external supporting cell of vestibular epithelium" EXACT [] xref: FMA:79802 is_a: CL:0002315 ! supporting cell of cochlea [Term] id: CL:0000635 name: Deiter's cell namespace: cell def: "The outer phalangeal cells of the organ of Corti. This cell holds the base of the hair cell in a cup-shaped depression." [GOC:tfm, ISBN:0721662544, http://www.britannica.com/EBchecked/topic/156177/Deiters-cell] synonym: "Deiters cell" EXACT [] synonym: "outer phalangeal cell" EXACT [] xref: FMA:75725 is_a: CL:0002165 ! phalangeal cell [Term] id: CL:0000636 name: Mueller cell namespace: cell xref: BTO:0003064 is_a: CL:0000127 ! astrocyte relationship: part_of UBERON:0001791 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! inner nuclear layer of retina [Term] id: CL:0000637 name: chromophil cell of anterior pituitary gland namespace: cell def: "A cell that stains readily in the anterior pituitary gland." [GOC:tfm, ISBN:0618947256] xref: FMA:83089 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000166 ! chromaffin cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000638 name: acidophil cell of pars distalis of adenohypophysis namespace: cell def: "An acidophilic chromophil cell that of the anterior pituitary gland." [GOC:tfm] synonym: "acidophil cell of pars anterior of adenohypophysis" EXACT [] synonym: "acidophil of pars anterior of adenohypophysis" EXACT [] synonym: "acidophil of pars distalis of adenohypophysis" EXACT [] synonym: "pituitary alpha cell" EXACT [] xref: FMA:83093 is_a: CL:0000637 ! chromophil cell of anterior pituitary gland [Term] id: CL:0000639 name: basophil cell of pars distalis of adenohypophysis namespace: cell def: "A basophillic chromophil cell that of the anterior pituitary gland." [GOC:tfm] synonym: "basophil cell of anterior lobe of hypophysis" EXACT [] synonym: "beta cell" RELATED [] xref: FMA:83094 is_a: CL:0000637 ! chromophil cell of anterior pituitary gland [Term] id: CL:0000641 name: chromophobe cell namespace: cell def: "A cell that is resistant to stains." [GOC:tfm] synonym: "chromophobic cell" EXACT [] xref: FMA:83626 is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000642 name: folliculostellate cell namespace: cell def: "A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones." [JB:jb] is_a: CL:0000163 ! endocrine cell is_a: CL:0000630 ! supportive cell relationship: part_of UBERON:0000007 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pituitary gland [Term] id: CL:0000644 name: Bergmann glial cell namespace: cell def: "Type of radial astrocyte in the cerebellar cortex that have their cell bodies in the Purkinje cell layer and processes that extend into the molecular layer, terminating with bulbous endfeet at the pial surface. Bergmann glia express high densities of glutamate transporters that limit diffusion of the neurotransmitter glutamate during its release from synaptic terminals. Besides their role in early development of the cerebellum, Bergmann glia are also required for the pruning or addition of synapses." [GOC:tfm, http://www.neurolex.org/wiki/Category:Bergmann_Glial_Cell] synonym: "Bergmann astrocyte" EXACT [] synonym: "Bergmann glial cell of cerebellum" EXACT [] xref: FMA:54559 is_a: CL:0000127 ! astrocyte [Term] id: CL:0000645 name: pituicyte namespace: cell def: "A cell with long processes running parallel to adjacent axons in the proximal infundibulum of the neurohypophysis. These processes form a three-dimensional network among the axons of the hypothalamic neurosecretory cells and are connected by gap junctions which provide for their metabolic coupling. This cell type constitutes most of the nonexcitable tissue in the neurohypophsis; function may include possibly acting as an intermediate in the modulation of oxytocin and vasopressin release. This cell type is highly variable in size and shape and commonly contain lipid droplets and deposits of lipochrome pigment." [ISBN:0412046911, ISBN:0517223651, http://63.198.234.228/OpenFMA/Pituicyte.html] xref: BTO:0003793 xref: FMA:83503 is_a: CL:0000127 ! astrocyte [Term] id: CL:0000646 name: basal cell namespace: cell def: "Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament." [GOC:tfm, ISBN:0517223651, http://63.198.234.228/OpenFMA/Basal%20cell.html] xref: BTO:0000939 xref: FMA:62516 is_a: CL:0000036 ! epithelial fate stem cell [Term] id: CL:0000647 name: multinucleated giant cell namespace: cell def: "A phagocytic cell formed by the fusion of macrophages, occurs in chronic inflammatory responses to persistent microorganism such as M.tuberculosis, component of granulomas. Sometimes used to refer to megakaryocytes." [GOC:add, GOC:tfm, ISBN:0702022918, ISBN:0702024783] comment: Role or process: Chronic infection, granulomatous inflammation. Consider also megakaryocyte (CL:0000556) as sometimes multinucleated giant cell is used to refer to this. synonym: "Langerhans giant cell" EXACT [ISBN:0702022918, ISBN:0702024783] synonym: "foreign body giant cell" EXACT [ISBN:0702022918, ISBN:0702024783] synonym: "macrophage polykaryon" EXACT [ISBN:0702022918, ISBN:0702024783] synonym: "multinucleate giant cell" EXACT [ISBN:0702022918, ISBN:0702024783] synonym: "syncytial giant cell" EXACT [ISBN:0702022918, ISBN:0702024783] xref: BTO:0003107 xref: FMA:83035 is_a: CL:0000766 ! myeloid leukocyte relationship: develops_from CL:0000235 ! macrophage [Term] id: CL:0000648 name: kidney granular cell namespace: cell alt_id: CL:0000461 def: "A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation." [GOC:cvs, GOC:tfm, PMID:11457727] synonym: "JG cell" EXACT [] synonym: "juxtaglomerular cell" BROAD [] synonym: "renin secreting cell" EXACT [] xref: FMA:84138 is_a: CL:0000154 ! protein secreting cell is_a: CL:0000192 ! smooth muscle cell is_a: CL:1000618 ! juxtaglomerular complex cell relationship: part_of UBERON:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesonephros [Term] id: CL:0000649 name: prickle cell namespace: cell alt_id: CL:0002186 def: "A cell with delicate radiating processes known as desmosomes that form intercellular bridges between other cells of this type. This cell type forms the stratum spinosum (prickle cell layer. A function of this cell is to generate keratin." [GOC:tfm, ISBN:0721662544, ISBN:0815332181] synonym: "prickle cell of epidermis" EXACT [] xref: FMA:69059 is_a: CL:0000312 ! keratinocyte [Term] id: CL:0000650 name: mesangial cell namespace: cell def: "A cell type that encapsulates the capillaries and venules in the kidney. This cell secretes mesangial matrix that provides the structural support for the capillaries." [GOC:tfm, http://www.copewithcytokines.de/cope.cgi?key=mesangial%20cells] xref: BTO:0000853 xref: FMA:70972 is_a: CL:0000669 ! pericyte cell relationship: develops_from CL:0000134 ! mesenchymal cell [Term] id: CL:0000651 name: neck cell namespace: cell def: "A mucus-secreting cell, with numerous apical secretory vesicles containing mucins; nucleus are basally displaced; numerous at the neck of mucus secreting glands" [GOC:tfm] synonym: "mucous neck cell" EXACT [] is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000319 ! mucus secreting cell [Term] id: CL:0000652 name: pinealocyte namespace: cell def: "This cell type produces and secretes melatonin and forms the pineal parenchyma. Extending from each cell body, which has a spherical, oval or lobulated mucleus, are one or more tortuous basophilic processes, containing parallel microtubules known as synaptic ribbons. These processes end in expanded terminal buds near capillaries or less, frequently, ependymal cells of the pineal recess. The terminal buds contain granular endoplasmic reticulum, mitochondria and electron-dense cored vesicles, which store monoamines and polypeptide hormones, release of which appears to require sympathetic innervation." [GOC:tfm, ISBN:0517223651, PMID:16687276, http://63.198.234.228/OpenFMA/Pinealocyte.html] xref: BTO:0001068 xref: FMA:83417 is_a: CL:0000163 ! endocrine cell is_a: CL:0000710 ! neurecto-epithelial cell relationship: part_of UBERON:0001905 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pineal body [Term] id: CL:0000653 name: glomerular visceral epithelial cell namespace: cell def: "A glomerular visceral epithelial cell is a specialized kidney epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells." [GOC:tfm] comment: GO has podocyte as a related synonym due to concern this may refer to more than one cell type. However, this did not turn up in my search. If podocyte does refer to more than one cell type, then we should classify the synonym to 'related'. synonym: "podocyte" EXACT [] xref: BTO:0002295 is_a: CL:0002518 ! kidney epithelial cell is_a: CL:0002522 ! renal filtration cell is_a: CL:0000066 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! epithelial cell relationship: part_of UBERON:0004739 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pronephric glomerulus [Term] id: CL:0000654 name: primary oocyte namespace: cell def: "A primary oocyte is an oocyte that has not completed female meosis I." [GOC:tfm, ISBN:0721662544] xref: BTO:0000512 xref: FMA:18645 is_a: CL:0000023 ! oocyte relationship: develops_from CL:0000024 ! oogonial cell [Term] id: CL:0000655 name: secondary oocyte namespace: cell def: "A secondary oocyte is an oocyte that has not completed meiosis II." [GOC:tfm, ISBN:0721662544] xref: BTO:0003094 xref: FMA:18646 is_a: CL:0000023 ! oocyte relationship: develops_from CL:0000654 ! primary oocyte [Term] id: CL:0000656 name: primary spermatocyte namespace: cell def: "A diploid cell that has derived from a spermatogonium and can subsequently begin meiosis and divide into two haploid secondary spermatocytes." [GOC:tfm, ISBN:0721662544] xref: BTO:0001115 xref: FMA:72292 is_a: CL:0000017 ! spermatocyte [Term] id: CL:0000657 name: secondary spermatocyte namespace: cell def: "One of the two haploid cells into which a primary spermatocyte divides, and which in turn gives origin to spermatids." [GOC:tfm, ISBN:0721662544] xref: BTO:0000709 xref: FBbt:00004941 xref: FMA:72293 is_a: CL:0000017 ! spermatocyte relationship: develops_from CL:0000656 ! primary spermatocyte relationship: develops_from CL:0000087 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! male germ line stem cell (sensu Nematoda and Protostomia) [Term] id: CL:0000658 name: cuticle secreting cell namespace: cell def: "An epithelial cell that secretes cuticle." [GOC:tfm] is_a: CL:0000066 ! epithelial cell is_a: CL:0000327 ! extracellular matrix secreting cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000659 name: eggshell secreting cell namespace: cell def: "An extracellular matrix secreting cell that secretes eggshell." [GOC:tfm] is_a: CL:0000327 ! extracellular matrix secreting cell is_a: CL:0000500 ! follicular epithelial cell [Term] id: CL:0000660 name: glycocalyx secreting cell namespace: cell def: "An extracellular matrix secreting cell that secretes glycocalyx." [GOC:tfm] is_a: CL:0000327 ! extracellular matrix secreting cell [Term] id: CL:0000661 name: distal tip cell (sensu Nematoda) namespace: cell is_a: CL:0000422 ! mitogenic signaling cell [Term] id: CL:0000662 name: neuroglioblast (sensu Nematoda) namespace: cell is_a: CL:0000468 ! neuroglioblast [Term] id: CL:0000663 name: valve cell namespace: cell is_a: CL:0000144 ! cell by function [Term] id: CL:0000664 name: closable valve cell namespace: cell is_a: CL:0000185 ! myoepithelial cell is_a: CL:0000663 ! valve cell [Term] id: CL:0000665 name: permanently open valve cell namespace: cell is_a: CL:0000663 ! valve cell [Term] id: CL:0000666 name: fenestrated cell namespace: cell synonym: "window cell" EXACT [] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000667 name: collagen secreting cell namespace: cell def: "An extracellular matrix secreting cell that secretes collagen." [GOC:tfm] is_a: CL:0000327 ! extracellular matrix secreting cell [Term] id: CL:0000668 name: parenchymal cell namespace: cell def: "The cell characteristic of an organ, as distinguished from associated connective or supporting tissues." [ISBN:0471245208] comment: cell type has a similar but slightly different meaning in botany (plants): see PO:0000074. xref: BTO:0002174 xref: FMA:84638 is_a: CL:0000063 ! cell by histology [Term] id: CL:0000669 name: pericyte cell namespace: cell alt_id: CL:0000184 def: "An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitia and muscle layer are missing (thus distingushing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells." [GOC:dsd, GOC:tfm, ISBN:0721662544, MESH:D020286, PMID:16807374, PMID:17986482, PMID:20024907] comment: Pericytes are CD10-positive, CD13-positive, CD31-negative, CD45-negative, CD106-positive, CD117-negative, CD140-positive, CD144-negative, CD146-positive, CD271-positive, CD325-positive, NG2-positive, RGS5-positive, SMA-positive, and desmin-positive. A subpopulation is CD248-positive. They are also capable of producing angiopoietin 1, CXCL12, TGF-beta, and VEGF-A. synonym: "ARC" EXACT [PMID:17986482] synonym: "adventitial cell" RELATED [] synonym: "adventitial reticular cell" EXACT [] synonym: "cell of Rouget" EXACT [] synonym: "pericyte" EXACT [] synonym: "pericyte of Rouget" EXACT [] xref: BTO:0002441 xref: FMA:63174 is_a: CL:0000183 ! contractile cell is_a: CL:0000630 ! supportive cell is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0000670 name: primordial germ cell namespace: cell def: "A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells." [GOC:tfm, PMID:1381289] synonym: "gonocyte" EXACT [] synonym: "primitive germ cell" EXACT [] xref: FMA:70567 is_a: CL:0000039 ! germ line cell is_a: CL:0000219 ! motile cell relationship: part_of UBERON:0000990 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! reproductive system [Term] id: CL:0000671 name: centripetally migrating follicle cell namespace: cell xref: FBbt:00004906 is_a: CL:0000477 ! follicle cell [Term] id: CL:0000672 name: tracheary element namespace: cell def: "Obsolete. Use PO:0000290 from Plant Ontology instead. A water conducting cell, tracheid or vessel member." [ISBN:0471245208] is_obsolete: true comment: replaced_by: PO:0000290 [Term] id: CL:0000673 name: Kenyon cell namespace: cell is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000674 name: interfollicle cell namespace: cell synonym: "fly stalk cell" EXACT [] xref: FBbt:00004910 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0000477 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! follicle cell [Term] id: CL:0000675 name: female gamete namespace: cell def: "A mature sexual reproductive cell of the female germline." [GOC:tfm] is_a: CL:0000021 ! female germ cell is_a: CL:0000300 ! gamete [Term] id: CL:0000676 name: cap cell namespace: cell xref: BTO:0001033 is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) [Term] id: CL:0000677 name: gut absorptive cell namespace: cell def: "Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules." [JB:jb] is_a: CL:0000212 ! absorptive cell relationship: part_of UBERON:0001555 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive tract [Term] id: CL:0000678 name: commisural neuron namespace: cell is_a: CL:0000372 ! tormogen cell [Term] id: CL:0000679 name: glutamatergic neuron namespace: cell xref: WBbt:0006829 is_a: CL:0000107 ! autonomic neuron [Term] id: CL:0000680 name: muscle precursor cell namespace: cell is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000222 ! mesodermal cell relationship: develops_from UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesoderm [Term] id: CL:0000681 name: radial glial cell namespace: cell def: "A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration." [GOC:dph] is_a: CL:0000337 ! neuroblast (sensu Vertebrata) relationship: develops_from CL:0000133 ! neurectodermal cell relationship: develops_from CL:0000710 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neurecto-epithelial cell relationship: develops_from UBERON:0002346 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neurectoderm [Term] id: CL:0000682 name: M cell namespace: cell def: "An absorptive cell of the gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes." [GOC:jb, GOC:tfm] synonym: "M-cell" EXACT [] synonym: "microfold cell" EXACT [] xref: BTO:0003600 xref: FMA:62929 is_a: CL:0000066 ! epithelial cell is_a: CL:0000473 ! defensive cell is_a: CL:0000627 ! transporting cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000683 name: ependymoglial cell namespace: cell def: "A cell that transports hormones from neurosecretory cells. This nerve cell is characterized by bipolar shape and endfeet that contact a basal lamina around blood vessels, and/or the pia mater or vitreous body of the eye and additionally contact the ventricular surface or sub-retinal space." [JB:jb, http://neurolex.org/wiki/Category:Ependymoglial_Cell] synonym: "ependymal astrocyte" EXACT [] is_a: CL:0000127 ! astrocyte [Term] id: CL:0000684 name: littoral cell of liver namespace: cell is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000685 name: meristematic cell namespace: cell def: "Obsolete. Use PO:0004010 from Plant Ontology instead. A cell synthesizing protoplasm and producing new cells by division and with only a primary cell wall." [PO:0004010] is_obsolete: true comment: replaced_by: PO:0004010 [Term] id: CL:0000686 name: cerebrospinal fluid secreting cell namespace: cell def: "A columnar/cuboidal epithelial cell that secretes cerebrospinal fluid." [GOC:tfm] is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0000151 ! secretory cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0000687 name: R1 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000688 name: perijunctional fibroblast namespace: cell def: "A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina." [JB:jb] is_a: CL:0000057 ! fibroblast is_a: CL:0000630 ! supportive cell [Term] id: CL:0000689 name: myoendocrine cell namespace: cell def: "A cell with both myofibrils and secretory granules." [JB:jb] is_a: CL:0000163 ! endocrine cell [Term] id: CL:0000690 name: R2 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000691 name: stellate interneuron namespace: cell is_a: CL:0000099 ! interneuron [Term] id: CL:0000692 name: terminal Schwann cell namespace: cell def: "A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse." [JB:jb, PMID:16136171] synonym: "Schwann cell" BROAD [] is_a: CL:0000630 ! supportive cell is_a: CL:0002376 ! non-myelinating Schwann cell [Term] id: CL:0000693 name: neuroglioform cell namespace: cell def: "A stellate interneuron having 7-10 dendrites that may branch." [JB:jb] synonym: "spiderweb cell" EXACT [] is_a: CL:0000691 ! stellate interneuron [Term] id: CL:0000694 name: R3 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000695 name: Cajal-Retzius cell namespace: cell def: "One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene." [PMID:10600995, PMID:9728912] is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0000696 name: PP cell namespace: cell def: "A cell that stores and secretes pancreatic polypeptide hormone." [GOC:tfm, JB:jb, PMID:15153415] synonym: "type F enteroendocrine cell" EXACT [] xref: FMA:62938 xref: FMA:83409 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0000697 name: R4 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000698 name: paraganglial cell namespace: cell is_obsolete: true [Term] id: CL:0000699 name: paraganglial type 1 cell namespace: cell def: "A type of glomus or chief cell, is sensitive to hypoxia and produce catecholamines." [GOC:tfm] is_a: CL:0000165 ! neuroendocrine cell [Term] id: CL:0000700 name: dopaminergic neuron namespace: cell def: "A neuron that releases dopamine as a neurotransmitter." [GOC:dhill] synonym: "dopaminergic cell" EXACT [] xref: BTO:0004032 xref: FMA:84787 xref: WBbt:0006746 is_a: CL:0000107 ! autonomic neuron [Term] id: CL:0000701 name: paraganglia type 2 cell namespace: cell def: "Supports paraganglial type 1 cell." [JB:jb] is_a: CL:0000630 ! supportive cell [Term] id: CL:0000702 name: R5 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000703 name: sustentacular cell namespace: cell def: "Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors." [JB:jb] xref: BTO:0002315 is_a: CL:0000630 ! supportive cell [Term] id: CL:0000704 name: endothelial tip cell namespace: cell def: "A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels." [PMID:15376331] is_a: CL:0000071 ! blood vessel endothelial cell [Term] id: CL:0000705 name: R6 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000706 name: choroid plexus epithelial cell namespace: cell alt_id: CL:1000430 def: "Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord." [GOC:add, GOC:tfm, JB:jb, PMID:9550134] synonym: "epithelial cell of choroid plexus" EXACT [] xref: FMA:70549 is_a: CL:0000065 ! ependymal cell is_a: CL:0000627 ! transporting cell [Term] id: CL:0000707 name: R7 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000494 ! UV sensitive photoreceptor cell [Term] id: CL:0000708 name: leptomeningeal cell namespace: cell def: "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [JB:jb] synonym: "leptomemingeal cell" RELATED [] is_a: CL:0000327 ! extracellular matrix secreting cell is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0000709 name: R8 photoreceptor cell namespace: cell is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000710 name: neurecto-epithelial cell namespace: cell def: "Epithelial cells derived from neural plate and neural crest." [GOC:tfm, http://63.198.234.228/OpenFMA/Neurecto-epithelial%20cell.html] comment: The term \"neuroepithelial cell\" is used to describe both this cell type and sensory epithelial cell (CL:0000098). synonym: "neuroepithelial cell" BROAD [] xref: BTO:0004301 xref: FMA:70557 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0002077 ! ecto-epithelial cell relationship: develops_from CL:0000133 ! neurectodermal cell [Term] id: CL:0000711 name: cumulus cell namespace: cell def: "Cumulus cell is a specialized granulosa cell that surrounds and nourishes the oocyte. This cell-type surrounds the fully-grown oocyte to form a cumulus-oocyte complex (abbr. COC). The terms cumulus oophorus cells, cumulus granulosa cells, cumulus oophorous granulosa cells, granulosa-cumulus cells are used to make a distinction between this cell and the other functionally different subpopulation of granulosa cells at the wall of the Graafian follicle." [GOC:tfm, http://www.copewithcytokines.org/cope.cgi?key=cumulus%20cells] xref: BTO:0002236 is_a: CL:0000154 ! protein secreting cell is_a: CL:0002174 ! follicular cell of ovary relationship: develops_from CL:0000501 ! granulosa cell [Term] id: CL:0000712 name: stratum granulosum cell namespace: cell is_a: CL:0000362 ! epidermal cell [Term] id: CL:0000713 name: corona radiata cell namespace: cell is_a: CL:0000711 ! cumulus cell [Term] id: CL:0000715 name: embryonic crystal cell namespace: cell is_a: CL:0000392 ! crystal cell is_a: CL:0000736 ! embryonic gland hemocyte [Term] id: CL:0000716 name: lymph gland crystal cell namespace: cell is_a: CL:0000392 ! crystal cell is_a: CL:0000735 ! lymph gland hemocyte [Term] id: CL:0000717 name: fusimotor neuron namespace: cell def: "A subset of motor neurons that innervates intrafusal muscle fibers and has small diameter axons." [PMID:15582775] is_a: CL:0000100 ! motor neuron [Term] id: CL:0000718 name: cone cell (sensu Endopterygota) namespace: cell is_a: CL:0000306 ! crystallin accumulating cell relationship: part_of UBERON:0000971 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ommatidium [Term] id: CL:0000719 name: posterior cone cell (sensu Endopterygota) namespace: cell is_a: CL:0000718 ! cone cell (sensu Endopterygota) [Term] id: CL:0000720 name: anterior cone cell (sensu Endopterygota) namespace: cell is_a: CL:0000718 ! cone cell (sensu Endopterygota) [Term] id: CL:0000721 name: equatorial cone cell (sensu Endopterygota) namespace: cell is_a: CL:0000718 ! cone cell (sensu Endopterygota) [Term] id: CL:0000722 name: cystoblast namespace: cell is_a: CL:0000586 ! germ cell [Term] id: CL:0000723 name: somatic stem cell namespace: cell def: "A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103] xref: FMA:63368 is_a: CL:0000034 ! stem cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000724 name: heterocyst namespace: cell def: " A differentiated cell that functions as a site of nitrogen fixation under aerobic conditions." [MA:ma] xref: BTO:0000600 is_a: CL:0000520 ! prokaryotic cell is_a: CL:0000725 ! nitrogen fixing cell [Term] id: CL:0000725 name: nitrogen fixing cell namespace: cell is_a: CL:0000144 ! cell by function [Term] id: CL:0000726 name: chlamydospore namespace: cell def: "An asexual 1-celled spore (primarily for perennation, not dissemination). Originates endogenously and singly within part of a pre-existing cell by the contraction of the protoplast. Possesses an inner secondary and often thickened hyaline or brown wall, usually impregnated with hydrophobic material." [GOC:tfm, ISBN:085199377X] comment: Considering obsoleting as sometimes used to refer to protozoans too. But reference indicates term was intended for fungus. is_a: CL:0000605 ! fungal asexual spore [Term] id: CL:0000727 name: primary pigment cell namespace: cell is_a: CL:0001658 ! visual pigment cell (sensu Nematoda and Protostomia) [Term] id: CL:0000728 name: secondary pigment cell namespace: cell is_a: CL:0001658 ! visual pigment cell (sensu Nematoda and Protostomia) [Term] id: CL:0000729 name: tertiary pigment cell namespace: cell is_a: CL:0001658 ! visual pigment cell (sensu Nematoda and Protostomia) [Term] id: CL:0000730 name: leading edge cell namespace: cell def: "A cell at the front of a migrating epithelial sheet." [MA:ma] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000731 name: urothelial cell namespace: cell def: "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [GOC:tfm, MA:ma] synonym: "bladder transitional cell" NARROW [] synonym: "transitional epithelial cell of urinary bladder" NARROW [] synonym: "urinary tract transitional epithelial cell" NARROW [] xref: FMA:84127 is_a: CL:0000244 ! transitional epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000732 name: amoeboid cell namespace: cell is_a: CL:0000219 ! motile cell [Term] id: CL:0000733 name: lymph gland plasmatocyte namespace: cell is_a: CL:0000394 ! plasmatocyte is_a: CL:0000735 ! lymph gland hemocyte [Term] id: CL:0000734 name: embryonic gland plasmatocyte namespace: cell is_a: CL:0000394 ! plasmatocyte is_a: CL:0000736 ! embryonic gland hemocyte [Term] id: CL:0000735 name: lymph gland hemocyte namespace: cell is_a: CL:0000387 ! hemocyte (sensu Nematoda and Protostomia) [Term] id: CL:0000736 name: embryonic gland hemocyte namespace: cell is_a: CL:0000387 ! hemocyte (sensu Nematoda and Protostomia) [Term] id: CL:0000737 name: striated muscle cell namespace: cell def: "Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544] xref: BTO:0002916 xref: FMA:86936 is_a: CL:0000187 ! muscle cell [Term] id: CL:0000738 name: leukocyte namespace: cell def: "An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue." [GOC:add, GOC:tfm, ISBN:978-0-323-05290-0] synonym: "immune cell" EXACT [] synonym: "leucocyte" EXACT [] synonym: "white blood cell" EXACT [] xref: BTO:0000751 xref: FMA:62852 is_a: CL:0000988 ! hematopoietic cell is_a: CL:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! circulating cell is_a: CL:0000219 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! motile cell relationship: develops_from CL:0000037 ! hematopoietic stem cell relationship: part_of UBERON:0002405 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! immune system [Term] id: CL:0000740 name: retinal ganglion cell namespace: cell def: "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve." [GOC:dph] synonym: "RGC" EXACT [] synonym: "gangliocyte" EXACT [] synonym: "ganglion cell of retina" EXACT [] xref: BTO:0001800 xref: FMA:67765 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) relationship: part_of UBERON:0001792 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! ganglionic layer of retina relationship: part_of UBERON:0001792 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ganglionic layer of retina [Term] id: CL:0000741 name: spinal accessory motor neuron namespace: cell def: "A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord." [PMID:16267219] synonym: "SACMN" EXACT [] is_a: CL:0000100 ! motor neuron [Term] id: CL:0000742 name: periarticular chondrocyte namespace: cell def: "A round chondrocyte that first differentiates in the late embryonic growth plate of bone." [PMID:15951842] is_a: CL:0000138 ! chondrocyte [Term] id: CL:0000743 name: hypertrophic chondrocyte namespace: cell def: "A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone." [PMID:15951842] is_a: CL:0000138 ! chondrocyte [Term] id: CL:0000744 name: columnar chondrocyte namespace: cell def: "A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate." [PMID:15951842] is_a: CL:0000138 ! chondrocyte [Term] id: CL:0000745 name: horizontal cell namespace: cell def: "A neuron that laterally connects other neurons in the inner nuclear layer of the retina." [ISBN:0195088433] xref: BTO:0004120 is_a: CL:0000099 ! interneuron relationship: part_of UBERON:0003902 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! retinal neural layer [Term] id: CL:0000746 name: cardiac muscle cell namespace: cell def: "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908] synonym: "cardiac myocyte" EXACT [] synonym: "cardiocyte" BROAD [] synonym: "cardiomyocyte" EXACT [] synonym: "heart muscle cell" EXACT [] xref: BTO:0001539 xref: FMA:14067 xref: FMA:83808 is_a: CL:0000737 ! striated muscle cell is_a: CL:0002494 ! cardiocyte relationship: develops_from CL:0000513 ! cardiac muscle myoblast relationship: part_of UBERON:0001133 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cardiac muscle tissue relationship: part_of UBERON:0002349 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! myocardium [Term] id: CL:0000747 name: cyanophore namespace: cell def: "A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance." [SANBI:mhl] synonym: "blue chromatophore" RELATED [] is_a: CL:0000147 ! pigment cell relationship: develops_from CL:0005005 ! cyanoblast relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument [Term] id: CL:0000748 name: retinal bipolar neuron namespace: cell def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer." [PMID:14689473] is_a: CL:0000103 ! bipolar neuron [Term] id: CL:0000749 name: ON-bipolar cell namespace: cell def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors." [PMID:14689473] is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000750 name: OFF-bipolar cell namespace: cell def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors." [PMID:14689473] is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000751 name: rod bipolar cell namespace: cell def: "A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer." [GOC:tfm, PMID:14689473] xref: FMA:67750 is_a: CL:0000748 ! retinal bipolar neuron is_a: CL:0000749 ! ON-bipolar cell [Term] id: CL:0000752 name: cone retinal bipolar cell namespace: cell def: "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer." [PMID:14689473] is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000753 name: type 1 cone bipolar cell (sensu Mus) namespace: cell def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell body of these cells is in the middle of the inner plexiform layer. The dendritic tree is stout and the axon terminates in sublamina 1. The axonal terminal is wide and has only a few varicosities." [PMID:14689473] synonym: "DB1 cone bipolar cell" EXACT [] is_a: CL:0000750 ! OFF-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000754 name: type 2 cone bipolar cell (sensu Mus) namespace: cell def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is not well filled and the dendrites are more delicate than in type 1 cells. The axon terminal is bushier and exhibits a dense plexus of varicosities in the inner part of sublamina 1." [PMID:14689473] synonym: "FMB cone bipolar cell" EXACT [] is_a: CL:0000750 ! OFF-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000755 name: type 3 cone bipolar cell (sensu Mus) namespace: cell def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is delicate and the dendritic tips appear small when compared with type 1 cells. The axon terminal is stratified and restricted to sublamina 2 of the inner plexiform layer." [PMID:14689473] synonym: "DB2 cone bipolar cell" EXACT [] is_a: CL:0000750 ! OFF-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000756 name: type 4 cone bipolar cell (sensu Mus) namespace: cell def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell has a diffuse axon terminal with varicosities in sublaminae 1 and 2 of the inner plexiform layer." [PMID:14689473] synonym: "DB3 cone bipolar cell" EXACT [] is_a: CL:0000750 ! OFF-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000757 name: type 5 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is restricted to sublamina 3 of the inner plexiform layer. It is narrowly stratified and branched. The dendritic tree has many delicate branches." [PMID:14689473] synonym: "DB4 cone bipolar cell" EXACT [] is_a: CL:0000749 ! ON-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000758 name: type 6 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The cell has a loose, delicate axon terminal that opens in sublamina 3 of the inner plexiform layer and descends into sublamina 4." [PMID:14689473] synonym: "DB5 cone bipolar cell" EXACT [] is_a: CL:0000749 ! ON-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000759 name: type 7 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is narrowly stratified and are found just below a calretinin-expressing band in sublamina 4 of the inner plexiform layer." [PMID:14689473] synonym: "IMB cone bipolar cell" EXACT [] is_a: CL:0000749 ! ON-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000760 name: type 8 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. This cell has the widest dendritic field and the widest axon terminal of all retinal bipolar cells. The axon terminal is delicate and stratified through sublaminae 4 and 5 of the inner plexiform layer." [PMID:14689473] synonym: "DB6 cone bipolar cell" EXACT [] is_a: CL:0000749 ! ON-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000761 name: type 9 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The dendritic tree is wide and the dendritic convergence indicates cone selectivity. The axon terminal is sparsely branched and terminates in sublamina 5 of the inner plexiform layer." [PMID:14689473] synonym: "BB cone bipolar cell" EXACT [] is_a: CL:0000749 ! ON-bipolar cell is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000762 name: nucleated thrombocyte namespace: cell def: "A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates." [GOC:add, GOC:tfm, PMID:16360205] comment: Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals. is_a: CL:0000763 ! myeloid cell is_a: CL:0000081 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blood cell relationship: develops_from CL:0000828 ! thromboblast [Term] id: CL:0000763 name: myeloid cell namespace: cell def: "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [GOC:add] xref: BTO:0001441 is_a: CL:0000988 ! hematopoietic cell is_a: CL:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! circulating cell relationship: part_of UBERON:0002390 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hematopoietic system [Term] id: CL:0000764 name: erythroid lineage cell namespace: cell alt_id: CL:0002156 def: "A immature or mature cell in the lineage leading to and including erythrocytes." [GOC:add, GOC:tfm] comment: Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes. synonym: "erythropoietic cell" EXACT [] xref: FMA:62845 xref: FMA:83516 is_a: CL:0000763 ! myeloid cell relationship: part_of UBERON:0002390 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hematopoietic system [Term] id: CL:0000765 name: erythroblast namespace: cell def: "A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers." [GOC:add, ISBN:0721601464, PMID:18174176] synonym: "normoblast" EXACT [] xref: BTO:0001571 xref: FMA:83504 is_a: CL:0000764 ! erythroid lineage cell relationship: develops_from CL:0000547 ! proerythroblast [Term] id: CL:0000766 name: myeloid leukocyte namespace: cell def: "A cell of the monocyte, granulocyte, or mast cell lineage." [GOC:add] is_a: CL:0000738 ! leukocyte is_a: CL:0000763 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! myeloid cell [Term] id: CL:0000767 name: basophil namespace: cell def: "Any of the immature or mature forms of a granular leukocyte that in its mature form has an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse, bluish-black granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation. A basophil is CD123-positive, CD193-positive, CD203c-positive, and FceRIa-positive." [GOC:add, GOC:amm, GOC:dsd, GOC:tfm, ISBN:0721601464, MESH:D001491, PMCID:PMC2626675, PMID:11927641, PMID:19741522, PMID:21236338, PMID:9933081] comment: Matures in the bone marrow and account for <1% of leukocytes in the peripheral blood, spleen, and bone marrow. Basophils are described as being CD11a-positive, CD11b-positive, CD13-positive, CD15-positive, CD18-positive, CD21-positive, CD25-positive, CD29-positive, CD35-positive, CD40-positive, CD40L-positive, CD44-positive, CD45R-negative, CD46-positive, CD49a-positive, CD49b-positive, CD49d-positive, CD55-positive, CD59-positive, CD62L-positive, CD63-positive, CD69-positive, CD90-negative, CD116-positive, CD117-negative, CD124-positive, CD125-positive, CD131-positive, CD161-positive, CD184-positive, CD191-positive, CD192-positive, CD197-positive, CD200R3-positive, CD218-positive, CD282-positive, CD284-positive, CD289-positive, CD290-positive, CD294-positive, natural killer cell receptor 2B4-positive, smad1-positive, CD3-negative, CD4-negative, CD7-negative, CD8-negative, CD14-negative, CD15-negative, CD16-negative, CD19-negative, CD20-negative, CD34-negative, CD36-negative, CD45R-negative, CD56-negative, CD57-negative, CD235a-negative, and GR1-negative. Transcription factors- GATA1-positive, PU.1-positive. synonym: "basophilic leucocyte" EXACT [] synonym: "basophilic leukocyte" EXACT [] synonym: "polymorphonuclear leucocyte" BROAD [] synonym: "polymorphonuclear leukocyte" BROAD [] xref: BTO:0000129 xref: FMA:62862 is_a: CL:0000094 ! granulocyte [Term] id: CL:0000768 name: immature basophil namespace: cell def: "Any of the immature forms of a basophil, in which basophilic specific granules are present but other phenotypic features of the mature form may be lacking." [GOC:add, ISBN:0721601464] synonym: "immature basophilic leucocyte" EXACT [] synonym: "immature basophilic leukocyte" EXACT [] is_a: CL:0000767 ! basophil relationship: develops_from CL:0000830 ! basophilic promyelocyte [Term] id: CL:0000769 name: basophilic metamyelocyte namespace: cell def: "A basophil precursor in the granulocytic series, being a cell intermediate in development between a basophilic myelocyte and a band form basophil. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. Markers are CD11b-positive, CD15-positive, CD16-positive, CD24-positive, CD33-positive, and CD13-positive." [GOC:tfm, ISBN:0721601464, PMID:18466030] xref: FMA:84198 is_a: CL:0000768 ! immature basophil is_a: CL:0002192 ! metamyelocyte relationship: develops_from CL:0000614 ! basophilic myelocyte [Term] id: CL:0000770 name: band form basophil namespace: cell def: "A late basophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature basophil." [GOC:add, ISBN:0721601464, PMID:18466030, http://www.cap.org] is_a: CL:0000768 ! immature basophil relationship: develops_from CL:0000769 ! basophilic metamyelocyte [Term] id: CL:0000771 name: eosinophil namespace: cell def: "Any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Eosinophils are CD9-positive, CD191-positive, and CD193-positive." [GOC:add, GOC:amm, GOC:dsd, GOC:tfm, ISBN:0721601464, PMCID:PMC2626675, PMID:10914487, PMID:1662676] comment: Eosinophils are also CD14-negative, CD32-positive, CD44-positive, CD48-positive, CD69-positive, CD192-negative, MBP1-positive, MBP2-positive, TLR2-negative, TLR4-negative, and lineage-negative (B220, CD2, CD14, CD19, CD56, CD71, CD117, CD123, CD235a (glycophorin A), and TER119). The cytokines IL-3, IL-5, and GM-CSF are involved in their development and differentiation. Usually considered CD16-negative, CD16 is observed on eosinophilic metamyelocyte. synonym: "eosinocyte" EXACT [] synonym: "eosinophilic granulocyte" EXACT [] synonym: "eosinophilic leucocyte" EXACT [] synonym: "eosinophilic leukocyte" EXACT [] synonym: "polymorphonuclear leucocyte" BROAD [] synonym: "polymorphonuclear leukocyte" BROAD [] xref: BTO:0000399 xref: FMA:62861 is_a: CL:0000094 ! granulocyte [Term] id: CL:0000772 name: immature eosinophil namespace: cell def: "Any of the immature forms of an eosinophil, in which eosinophilic specific granules are present but other phenotypic features of the mature form may be lacking." [GOC:add, ISBN:0721601464] synonym: "immature eosinocyte" EXACT [] synonym: "immature eosinophilic leucocyte" EXACT [] synonym: "immature eosinophilic leukocyte" EXACT [] is_a: CL:0000771 ! eosinophil relationship: develops_from CL:0000833 ! eosinophilic promyelocyte [Term] id: CL:0000773 name: eosinophilic metamyelocyte namespace: cell def: "A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a eosinophilic myelocyte and a band form eosinophil. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare. Markers are integrin alpha-M-positive, fucosyltransferase FUT4-positive, low affinity immunoglobulin gamma Fc region receptor III-positive, CD33-positive, CD24-positive and aminopeptidase N-negative." [GOC:add, GOC:tfm, ISBN:0721601464, PMID:19622087] is_a: CL:0000772 ! immature eosinophil is_a: CL:0002192 ! metamyelocyte relationship: develops_from CL:0000612 ! eosinophilic myelocyte [Term] id: CL:0000774 name: band form eosinophil namespace: cell def: "A late eosinophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature basophil." [GOC:add, GOC:tfm, ISBN:0721601464, PMID:19622087, http://www.cap.org] is_a: CL:0000772 ! immature eosinophil relationship: develops_from CL:0000773 ! eosinophilic metamyelocyte [Term] id: CL:0000775 name: neutrophil namespace: cell def: "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [GOC:add, GOC:amm, GOC:tfm, ISBN:0721601464] synonym: "PMN" BROAD [] synonym: "neutrocyte" EXACT [] synonym: "neutrophil leucocyte" EXACT [] synonym: "neutrophil leukocyte" EXACT [] synonym: "neutrophilic leucocyte" EXACT [] synonym: "neutrophilic leukocyte" EXACT [] synonym: "poly" BROAD [] synonym: "polymorphonuclear leucocyte" BROAD [] synonym: "polymorphonuclear leukocyte" BROAD [] synonym: "polymorphonuclear neutrophil" BROAD [] synonym: "polynuclear neutrophilic leucocyte" BROAD [] synonym: "polynuclear neutrophilic leukocyte" BROAD [] xref: BTO:0000130 xref: FMA:62860 is_a: CL:0000094 ! granulocyte [Term] id: CL:0000776 name: immature neutrophil namespace: cell def: "Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking." [GOC:add, ISBN:0721601464] synonym: "immatuer neutrophilic leukocyte" EXACT [] synonym: "immature neutrocyte" EXACT [] synonym: "immature neutrophil leucocyte" EXACT [] synonym: "immature neutrophil leukocyte" EXACT [] synonym: "immature neutrophilic leucocyte" EXACT [] is_a: CL:0000775 ! neutrophil relationship: develops_from CL:0000564 ! neutrophilic promyelocyte [Term] id: CL:0000777 name: mesangial phagocyte namespace: cell def: "A tissue-resident macrophage of the renal glomerular mesangium involved in the disposal and degradation of filtration residues, presentation of antigen to T cells and in tissue remodeling." [GOC:add, GOC:tfm, ISBN:0702022918, ISBN:3540536663, PMID:1600140, PMID:16146841] synonym: "mesangial cell" BROAD [] is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0000778 name: mononuclear osteoclast namespace: cell def: "A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts." [GOC:add, GOC:tfm, PMID:12713016, PMID:15055519, PMID:17380158, PMID:9415452] comment: Morphology: mononuclear, highly vesicular. is_a: CL:0000092 ! osteoclast is_a: CL:0000113 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mononuclear phagocyte [Term] id: CL:0000779 name: multinuclear osteoclast namespace: cell def: "A specialized multinuclear osteoclast associated with the absorption and removal of bone." [GOC:add, PMID:12713016, PMID:9415452] comment: Morphology: multinucleated, highly vesicular. synonym: "multinucleated osteoclast" EXACT [] is_a: CL:0000092 ! osteoclast relationship: develops_from CL:0000778 ! mononuclear osteoclast [Term] id: CL:0000780 name: multinuclear odontoclast namespace: cell def: "A specialized multinuclear osteoclast associated with the absorption and removal of cementum." [GOC:add, PMID:9415452] comment: Morphology: multinucleated, highly vesicular; location: roots of deciduous (milk) teeth. synonym: "multinucleated odontoclast" EXACT [] is_a: CL:0000588 ! odontoclast relationship: develops_from CL:0000781 ! mononuclear odontoclast [Term] id: CL:0000781 name: mononuclear odontoclast namespace: cell def: "A specialized mononuclear osteoclast associated with the absorption and removal of cementum." [GOC:add, PMID:9415452] comment: Morphology: Mononuclear, highly vesicular; location: roots of deciduous (milk) teeth. is_a: CL:0000588 ! odontoclast is_a: CL:0000778 ! mononuclear osteoclast [Term] id: CL:0000782 name: myeloid dendritic cell namespace: cell def: "A dendritic cell of the myeloid lineage." [GOC:add, PMID:10449155, PMID:17332250, PMID:9521319] comment: These cells are CD1a-negative, CD1b-positive, CD11a-positive, CD11c-positive, CD13-positive, CD14-negative, CD20-negative, CD21-negative, CD33-positive, CD40-negative, CD50-positive, CD54-positive, CD58-positive, CD68-negative, CD80-negative, CD83-negative, CD85j-positive, CD86-positive, CD89-negative, CD95-positive, CD120a-negative, CD120b-positive, CD123-negative, CD178-negative, CD206-negative, CD207-negative, CD209-negative, and TNF-alpha-negative. Upon TLR stimulation, they are capable of producing high levels of TNF-alpha, IL-6, CXCL8 (IL-8). synonym: "CD11c+CD123- DC" EXACT [] synonym: "interdigitating cell" BROAD [] synonym: "mDC" EXACT [] synonym: "veiled cell" BROAD [] xref: BTO:0004721 is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0000576 ! monocyte [Term] id: CL:0000783 name: multinucleated phagocyte namespace: cell def: "A phagocyte formed by the fusion of mononuclear phagocytes." [GOC:add, GOC:tfm] is_a: CL:0000518 ! phagocyte (sensu Vertebrata) [Term] id: CL:0000784 name: plasmacytoid dendritic cell namespace: cell def: "A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825] synonym: "DC2" EXACT [] synonym: "IPC" EXACT [] synonym: "T-associated plasma cell" EXACT [] synonym: "interferon-producing cell" EXACT [] synonym: "lymphoid dendritic cell" EXACT [] synonym: "pDC" EXACT [] synonym: "plasmacytoid T cell" EXACT [] synonym: "plasmacytoid monocyte" EXACT [] synonym: "type 2 DC" EXACT [] xref: BTO:0004625 is_a: CL:0000451 ! dendritic cell relationship: develops_from CL:0000037 ! hematopoietic stem cell [Term] id: CL:0000785 name: mature B cell namespace: cell def: "A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen." [GOC:add, ISBN:0781735149] synonym: "mature B lymphocyte" EXACT [] synonym: "mature B-cell" EXACT [] synonym: "mature B-lymphocyte" EXACT [] is_a: CL:0000236 ! B cell is_a: CL:0000145 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! professional antigen presenting cell relationship: develops_from CL:0000818 ! transitional stage B cell [Term] id: CL:0000786 name: plasma cell namespace: cell def: "A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin." [GOC:add, GO_REF:0000031, ISBN:0721601464, ISBN:0781735149] synonym: "plasmacyte" EXACT [] xref: BTO:0000392 xref: FMA:70574 is_a: CL:0000946 ! antibody secreting cell relationship: develops_from CL:0000980 ! plasmablast [Term] id: CL:0000787 name: memory B cell namespace: cell def: "A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative." [GOC:add, GOC:rhs, GO_REF:0000031, ISBN:0781735149] synonym: "memory B lymphocyte" EXACT [] synonym: "memory B-cell" EXACT [] synonym: "memory B-lymphocyte" EXACT [] is_a: CL:0000785 ! mature B cell [Term] id: CL:0000788 name: naive B cell namespace: cell def: "A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD27-negative and that has not yet been activated by antigen in the periphery." [GOC:add, GOC:rhs, GO_REF:0000031, ISBN:0781765196] synonym: "naive B lymphocyte" EXACT [] synonym: "naive B-cell" EXACT [] synonym: "naive B-lymphocyte" EXACT [] is_a: CL:0000785 ! mature B cell relationship: develops_from CL:0000818 ! transitional stage B cell [Term] id: CL:0000789 name: alpha-beta T cell namespace: cell def: "A T cell that expresses an alpha-beta T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "alpha-beta T lymphocyte" EXACT [] synonym: "alpha-beta T-cell" EXACT [] synonym: "alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000084 ! T cell [Term] id: CL:0000790 name: immature alpha-beta T cell namespace: cell def: "An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "immature alpha-beta T lymphocyte" EXACT [] synonym: "immature alpha-beta T-cell" EXACT [] synonym: "immature alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000789 ! alpha-beta T cell [Term] id: CL:0000791 name: mature alpha-beta T cell namespace: cell def: "A alpha-beta T cell that has a mature phenotype." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "mature alpha-beta T lymphocyte" EXACT [] synonym: "mature alpha-beta T-cell" EXACT [] synonym: "mature alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000789 ! alpha-beta T cell relationship: develops_from CL:0000790 ! immature alpha-beta T cell [Term] id: CL:0000792 name: CD4-positive, CD25-positive, alpha-beta regulatory T cell namespace: cell def: "A CD4-positive, CD25-positive, alpha-beta T cell that regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release." [GOC:add, GOC:tfm, ISBN:0781735149, PMID:19464985] synonym: "CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte" EXACT [] synonym: "CD4-positive, CD25-positive, alpha-beta regulatory T-cell" EXACT [] synonym: "CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte" EXACT [] synonym: "suppressor T cell" BROAD [] synonym: "suppressor T lymphocyte" BROAD [] synonym: "suppressor T-cell" BROAD [] synonym: "suppressor T-lymphocyte" BROAD [] xref: FMA:84070 is_a: CL:0000624 ! CD4-positive, alpha-beta T cell [Term] id: CL:0000793 name: CD4-positive, alpha-beta intraepithelial T cell namespace: cell def: "A CD4-positive, alpha-beta T cell that is found in the columnar epithelium of the gastrointestinal tract." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "CD4-positive, alpha-beta intraepithelial T lymphocyte" EXACT [] synonym: "CD4-positive, alpha-beta intraepithelial T-cell" EXACT [] synonym: "CD4-positive, alpha-beta intraepithelial T-lymphocyte" EXACT [] synonym: "IEL" BROAD [] synonym: "intraepithelial lymphocyte" BROAD [] is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0000810 ! CD4-positive, alpha-beta thymocyte [Term] id: CL:0000794 name: CD8-positive, alpha-beta cytotoxic T cell namespace: cell def: "A CD8-positive, alpha-beta T cell that is capable of killing target cells in an antigen specific manner with the phenotype perforin-positive and granzyme B-positive." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, ISBN:0781735149] comment: Note that while T cells of this subset are loosely referred to 'cytotoxic T cells,' as many other T cell types, including CD4-positive, alpha-beta T cells and gamma-delta T cells exhibit cytotoxicity in vitro and in vivo. synonym: "CD8-positive, alpha-beta cytotoxic T lymphocyte" EXACT [] synonym: "CD8-positive, alpha-beta cytotoxic T-cell" EXACT [] synonym: "CD8-positive, alpha-beta cytotoxic T-lymphocyte" EXACT [] synonym: "cytotoxic T cell" BROAD [] synonym: "cytotoxic T lymphocyte" BROAD [] synonym: "cytotoxic T-cell" BROAD [] synonym: "cytotoxic T-lymphocyte" BROAD [] synonym: "killer T cell" EXACT [] synonym: "killer T lymphocyte" EXACT [] xref: FMA:70573 is_a: CL:0000625 ! CD8-positive, alpha-beta T cell relationship: develops_from CL:0000906 ! activated CD8-positive, alpha-beta T cell [Term] id: CL:0000795 name: CD8-positive, alpha-beta regulatory T cell namespace: cell def: "A CD8-positive, alpha-beta T cell that regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "CD8-positive, alpha-beta regulatory T lymphocyte" EXACT [] synonym: "CD8-positive, alpha-beta regulatory T-cell" EXACT [] synonym: "CD8-positive, alpha-beta regulatory T-lymphocyte" EXACT [] synonym: "suppressor T cell" BROAD [] synonym: "suppressor T lymphocyte" BROAD [] synonym: "suppressor T-cell" BROAD [] synonym: "suppressor T-lymphocyte" BROAD [] xref: FMA:84070 is_a: CL:0000625 ! CD8-positive, alpha-beta T cell [Term] id: CL:0000796 name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell namespace: cell def: "A alpha-beta intraepithelial T cell found in the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements." [GOC:add, ISBN:0781735149] synonym: "CD8-positive, alpha-beta intraepithelial T lymphocyte" EXACT [] synonym: "CD8-positive, alpha-beta intraepithelial T-cell" EXACT [] synonym: "CD8-positive, alpha-beta intraepithelial T-lymphocyte" EXACT [] synonym: "IEL" BROAD [] synonym: "intraepithelial lymphocyte" BROAD [] is_a: CL:0000797 ! alpha-beta intraepithelial T cell [Term] id: CL:0000797 name: alpha-beta intraepithelial T cell namespace: cell def: "A mature alpha-beta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "IEL" BROAD [] synonym: "alpha-beta intraepithelial T lymphocyte" EXACT [] synonym: "alpha-beta intraepithelial T-cell" EXACT [] synonym: "alpha-beta intraepithelial T-lymphocyte" EXACT [] synonym: "intraepithelial lymphocyte" BROAD [] is_a: CL:0000791 ! mature alpha-beta T cell [Term] id: CL:0000798 name: gamma-delta T cell namespace: cell def: "A T cell that expresses a gamma-delta T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149] comment: Note that gamma-delta T cells have both thymic and extrathymic differentiation pathways. synonym: "gamma-delta T lymphocyte" EXACT [] synonym: "gamma-delta T-cell" EXACT [] synonym: "gamma-delta T-lymphocyte" EXACT [] synonym: "gammadelta T cell" EXACT [] synonym: "gd T cell" RELATED [] is_a: CL:0000084 ! T cell [Term] id: CL:0000799 name: immature gamma-delta T cell namespace: cell def: "A gamma-delta T cell that has an immature phenotype." [GOC:add, ISBN:0781735149] comment: Note that gamma-delta T cells have both thymic and extrathymic differentiation pathways. synonym: "immature gamma-delta T lymphocyte" EXACT [] synonym: "immature gamma-delta T-cell" EXACT [] synonym: "immature gamma-delta T-lymphocyte" EXACT [] is_a: CL:0000798 ! gamma-delta T cell relationship: develops_from CL:0000807 ! DN3 thymocyte [Term] id: CL:0000800 name: mature gamma-delta T cell namespace: cell def: "A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "mature gamma-delta T lymphocyte" EXACT [] synonym: "mature gamma-delta T-cell" EXACT [] synonym: "mature gamma-delta T-lymphocyte" EXACT [] is_a: CL:0000798 ! gamma-delta T cell relationship: develops_from CL:0000799 ! immature gamma-delta T cell [Term] id: CL:0000801 name: gamma-delta intraepithelial T cell namespace: cell def: "A mature gamma-delta T cell that is found in the columnar epithelium of the gastrointestinal tract. These cells participate in mucosal immune responses." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "IEL" BROAD [] synonym: "gamma-delta intraepithelial T lymphocyte" EXACT [] synonym: "gamma-delta intraepithelial T-cell" EXACT [] synonym: "gamma-delta intraepithelial T-lymphocyte" EXACT [] synonym: "intraepithelial lymphocyte" BROAD [] is_a: CL:0000800 ! mature gamma-delta T cell [Term] id: CL:0000802 name: CD8-alpha alpha positive, gamma-delta intraepithelial T cell namespace: cell def: "A gamma-delta intraepithelial T cell that has the phenotype CD8-alpha alpha-positive." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "CD8-positive, gamma-delta intraepithelial T lymphocyte" EXACT [] synonym: "CD8-positive, gamma-delta intraepithelial T-cell" EXACT [] synonym: "CD8-positive, gamma-delta intraepithelial T-lymphocyte" EXACT [] synonym: "IEL" BROAD [] synonym: "intraepithelial lymphocyte" BROAD [] is_a: CL:0000801 ! gamma-delta intraepithelial T cell [Term] id: CL:0000803 name: CD4-negative CD8-negative gamma-delta intraepithelial T cell namespace: cell def: "A gamma-delta intraepithelial T cell that has the phenotype CD4-negative and CD8-negative." [GOC:add, GOC:tfm, ISBN:0781735149] synonym: "CD4-positive, gamma-delta intraepithelial T lymphocyte" EXACT [] synonym: "CD4-positive, gamma-delta intraepithelial T-cell" EXACT [] synonym: "CD4-positive, gamma-delta intraepithelial T-lymphocyte" EXACT [] synonym: "IEL" BROAD [] synonym: "intraepithelial lymphocyte" BROAD [] is_a: CL:0000801 ! gamma-delta intraepithelial T cell [Term] id: CL:0000805 name: immature single positive thymocyte namespace: cell def: "A thymocyte that has the phenotype CD4-negative, CD8-positive, CD44-negative, CD25-negative, and pre-TCR-positive." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149, http://www.immgen.org/index_content.html] comment: Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and rearranging the T cell receptor alpha chain and expressing the CD8 coreceptor. This stage comes between the DN4 and DP stages. synonym: "ISP" EXACT [] synonym: "T.ISP.th" EXACT [] synonym: "immature single positive T cell" EXACT [] synonym: "immature single positive T lymphocyte" EXACT [] synonym: "immature single positive T-lymphocyte" EXACT [] is_a: CL:0000893 ! thymocyte relationship: develops_from CL:0000808 ! DN4 thymocyte [Term] id: CL:0000806 name: DN2 thymocyte namespace: cell def: "A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-positive." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149] comment: Note that this type of thymocyte is at the earliest stage of T cell receptor rearrangement of the beta, gamma, and delta T cell receptor chains. synonym: "DN2 alpha-beta immature T lymphocyte" EXACT [] synonym: "DN2 alpha-beta immature T-cell" EXACT [] synonym: "DN2 alpha-beta immature T-lymphocyte" EXACT [] synonym: "DN2 cell" EXACT [] synonym: "DN2 immature T cell" EXACT [] synonym: "TN2 cell" EXACT [] synonym: "TN2 thymocyte" EXACT [] synonym: "double negative 2" EXACT [] synonym: "preT.DN2.Th" EXACT [] is_a: CL:0000893 ! thymocyte relationship: develops_from CL:0000894 ! DN1 thymic pro-T cell [Term] id: CL:0000807 name: DN3 thymocyte namespace: cell def: "A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149] synonym: "DN3 alpha-beta immature T lymphocyte" EXACT [] synonym: "DN3 alpha-beta immature T-cell" EXACT [] synonym: "DN3 alpha-beta immature T-lymphocyte" EXACT [] synonym: "DN3 cell" EXACT [] synonym: "DN3 immature T cell" EXACT [] synonym: "TN3 cell" EXACT [] synonym: "TN3 thymocyte" EXACT [] synonym: "double negative 3" EXACT [] synonym: "preT.DN3.Th" EXACT [] is_a: CL:0000893 ! thymocyte relationship: develops_from CL:0000806 ! DN2 thymocyte [Term] id: CL:0000808 name: DN4 thymocyte namespace: cell def: "A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149] comment: Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. synonym: "DN4 alpha-beta immature T lymphocyte" EXACT [] synonym: "DN4 alpha-beta immature T-lymphocyte" EXACT [] synonym: "DN4 cell" EXACT [] synonym: "DN4 immature T cell" EXACT [] synonym: "DN4 immature T-cell" EXACT [] synonym: "T.DN4.th" EXACT [] synonym: "double negative 4" EXACT [] is_a: CL:0000893 ! thymocyte relationship: develops_from CL:0000807 ! DN3 thymocyte [Term] id: CL:0000809 name: double-positive, alpha-beta thymocyte namespace: cell def: "A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149] comment: Thymocytes of this stage are undergoing positive and negative selection. synonym: "DP cell" EXACT [] synonym: "DP thymocyte" EXACT [] synonym: "double-positive, alpha-beta immature T lymphocyte" EXACT [] is_a: CL:0000790 ! immature alpha-beta T cell relationship: develops_from CL:0000805 ! immature single positive thymocyte [Term] id: CL:0000810 name: CD4-positive, alpha-beta thymocyte namespace: cell def: "An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149] synonym: "CD4-positive, alpha-beta immature T lymphocyte" EXACT [] synonym: "CD4-positive, alpha-beta immature T-cell" EXACT [] synonym: "CD4-positive, alpha-beta immature T-lymphocyte" EXACT [] synonym: "SP CD4 cell" EXACT [] is_a: CL:0000790 ! immature alpha-beta T cell relationship: develops_from CL:0000809 ! double-positive, alpha-beta thymocyte [Term] id: CL:0000811 name: CD8-positive, alpha-beta thymocyte namespace: cell def: "An immature alpha-beta T cell that is located in the thymus and is CD8-positive and CD4-negative." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149] synonym: "CD8-positive, alpha-beta immature T cell" RELATED [] synonym: "CD8-positive, alpha-beta immature T lymphocyte" EXACT [] synonym: "CD8-positive, alpha-beta immature T-cell" EXACT [] synonym: "CD8-positive, alpha-beta immature T-lymphocyte" EXACT [] synonym: "SP CD8 cell" EXACT [] is_a: CL:0000790 ! immature alpha-beta T cell relationship: develops_from CL:0000809 ! double-positive, alpha-beta thymocyte [Term] id: CL:0000813 name: memory T cell namespace: cell def: "A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, ISBN:0781735149] synonym: "memory T lymphocyte" EXACT [] synonym: "memory T-cell" EXACT [] synonym: "memory T-lymphocyte" EXACT [] xref: BTO:0003435 is_a: CL:0002419 ! mature T cell [Term] id: CL:0000814 name: mature NK T cell namespace: cell def: "A mature alpha-beta T cell of a distinct lineage that bears natural killer markers and a T cell receptor specific for a limited set of ligands. NK T cells have activation and regulatory roles particularly early in an immune response." [GOC:add, ISBN:0781735149] synonym: "mature NK T lymphocyte" EXACT [] synonym: "mature NK T-cell" EXACT [] synonym: "mature NK T-lymphocyte" EXACT [] synonym: "mature NKT cell" EXACT [] synonym: "mature natural killer T cell" EXACT [] synonym: "mature natural killer T lymphocyte" EXACT [] synonym: "mature natural killer T-cell" EXACT [] synonym: "mature natural killer T-lymphocyte" EXACT [] is_a: CL:0000791 ! mature alpha-beta T cell relationship: develops_from CL:0002042 ! immature NK T cell stage IV [Term] id: CL:0000815 name: regulatory T cell namespace: cell def: "A T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release." [GOC:add, GO_REF:0000031] comment: This cell type may express FoxP3 and CD25 and secretes IL-10 and TGF-beta. synonym: "regulatory T lymphocyte" EXACT [] synonym: "regulatory T-cell" EXACT [] synonym: "regulatory T-lymphocyte" EXACT [] synonym: "suppressor T cell" BROAD [] synonym: "suppressor T lymphocyte" BROAD [] synonym: "suppressor T-cell" BROAD [] synonym: "suppressor T-lymphocyte" BROAD [] xref: BTO:0004520 xref: FMA:84070 is_a: CL:0002419 ! mature T cell [Term] id: CL:0000816 name: immature B cell namespace: cell def: "An immature B cell is a precursor B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation." [GOC:add, GOC:rhs, GOC:tfm, GO_REF:0000031, ISBN:0781735149] synonym: "immature B lymphocyte" EXACT [] synonym: "immature B-cell" EXACT [] synonym: "immature B-lymphocyte" EXACT [] synonym: "newly formed B Cell" EXACT [ISBN:781735149] is_a: CL:0000817 ! precursor B cell relationship: develops_from CL:0000954 ! small pre-B-II cell [Term] id: CL:0000817 name: precursor B cell namespace: cell def: "A precursor B cell is a B cell with the phenotype CD10-positive." [GOC:rhs, GOC:tfm, GO_REF:0000031] synonym: "pre-B cell" EXACT [] xref: BTO:0001133 is_a: CL:0000236 ! B cell [Term] id: CL:0000818 name: transitional stage B cell namespace: cell def: "An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GOC:add, GO_REF:0000031, ISBN:0781735149, PMID:12810111] synonym: "T1 B cell" NARROW [] synonym: "T2 B cell" NARROW [] synonym: "T3 B cell" NARROW [] synonym: "transitional stage B lymphocyte" EXACT [] synonym: "transitional stage B-cell" EXACT [] synonym: "transitional stage B-lymphocyte" EXACT [] is_a: CL:0000236 ! B cell relationship: develops_from CL:0000816 ! immature B cell [Term] id: CL:0000819 name: B-1 B cell namespace: cell def: "A B cell of distinct lineage and surface marker expression. B-1 B cells are thought to be the primary source of natural IgM immunoglobulin, that is, IgM produced in large quantities without prior antigenic stimulation and generally reactive against various microorganisms, as well as the source of T-independent IgA immunoglobulin in the mucosal areas. These cells are CD43-positive." [GOC:add, GO_REF:0000031, PMID:11861604, http://www.immgen.org/index_content.html] synonym: "B-1 B lymphocyte" EXACT [] synonym: "B-1 B-cell" EXACT [] synonym: "B-1 B-lymphocyte" EXACT [] is_a: CL:0000785 ! mature B cell [Term] id: CL:0000820 name: B-1a B cell namespace: cell def: "A B-1 B cell that has the phenotype CD5-positive." [GOC:add, PMID:11861604] synonym: "B-1a B lymphocyte" EXACT [] synonym: "B-1a B-cell" EXACT [] synonym: "B-1a B-lymphocyte" EXACT [] synonym: "B1a B cell" EXACT [] is_a: CL:0000819 ! B-1 B cell [Term] id: CL:0000821 name: B-1b B cell namespace: cell def: "A B-1 B cell that has the phenotype CD5-negative, but having other phenotypic attributes of a B-1 B cell." [GOC:add, PMID:11861604] synonym: "B-1b B lymphocyte" EXACT [] synonym: "B-1b B-cell" EXACT [] synonym: "B-1b B-lymphocyte" EXACT [] is_a: CL:0000819 ! B-1 B cell [Term] id: CL:0000822 name: B-2 B cell namespace: cell def: "A conventional B cell subject to antigenic stimulation and dependent on T cell help and with a distinct surface marker expression pattern from B-1 B cells. These cells are CD43-negative." [GOC:add, GOC:tfm, ISBN:0781735149, PMID:11861604] synonym: "B-0 B cell" RELATED [] synonym: "B-2 B lymphocyte" EXACT [] synonym: "B-2 B-cell" EXACT [] synonym: "B-2 B-lymphocyte" EXACT [] is_a: CL:0000785 ! mature B cell [Term] id: CL:0000823 name: immature natural killer cell namespace: cell def: "A natural killer cell that is developmentally immature and expresses natural killer cell receptors (NKR)." [GOC:add, GO_REF:0000031, ISBN:0781735149, PMID:12457618] comment: In mouse the NKR are Ly49 molecules and in human these cells express KIR molecules. synonym: "immature NK cell" EXACT [] synonym: "p-NK" RELATED [PMID:12457618] is_a: CL:0000623 ! natural killer cell relationship: develops_from CL:0000937 ! pre-natural killer cell [Term] id: CL:0000824 name: mature natural killer cell namespace: cell def: "A natural killer cell that is developmentally mature and expresses a variety of inhibitory and activating receptors that recognize MHC class I and other stress related molecules." [GOC:add, GO_REF:0000031, ISBN:0781735149, PMID:14685782] synonym: "LAK cell" BROAD [PMID:14685782] synonym: "lymphokine activated killer cell" BROAD [PMID:14685782] synonym: "mature NK cell" EXACT [] is_a: CL:0000623 ! natural killer cell relationship: develops_from CL:0000823 ! immature natural killer cell [Term] id: CL:0000825 name: pro-NK cell namespace: cell def: "A lymphoid progenitor cell that is committed to the natural killer cell lineage, expressing CD122 (IL-15) receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules. In human this cell has the phenotype CD34-positive, CD45RA-positive, CD10-positive, CD117-negative, and CD161 negative." [GOC:add, GOC:pam, GO_REF:0000031, PMID:11532393, PMID:12457618, PMID:15032583, PMID:15766674] comment: Most markers only described for human pro NK cells. synonym: "NKP" EXACT [PMID:12457618, PMID:15032583, PMID:15766674] synonym: "natural killer cell progenitor" EXACT [] synonym: "null cell" RELATED [PMID:11532393] synonym: "preNK cell" RELATED [PMID:11532393] synonym: "pro-natural killer cell" EXACT [] is_a: CL:0000838 ! lymphoid lineage restricted progenitor cell relationship: develops_from CL:0000051 ! common lymphoid progenitor [Term] id: CL:0000826 name: pro-B cell namespace: cell def: "A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [GOC:add, ISBN:0781735149, PMID:12633665] synonym: "pre-B cell (Philadelphia nomenclature)" RELATED [PMID:11244048] synonym: "pre-pro B cell" BROAD [PMID:17582343] synonym: "pro-B lymphocyte" EXACT [] synonym: "pro-B-cell" EXACT [] synonym: "pro-B-lymphocyte" EXACT [] synonym: "progenitor B cell" EXACT [] xref: BTO:0003104 is_a: CL:0000838 ! lymphoid lineage restricted progenitor cell relationship: develops_from CL:0000051 ! common lymphoid progenitor [Term] id: CL:0000827 name: pro-T cell namespace: cell def: "A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149] synonym: "DN1 cell" NARROW [] synonym: "DN1 thymocyte" NARROW [] synonym: "TN1 cell" NARROW [] synonym: "pro-T lymphocyte" EXACT [] synonym: "progenitor T cell" EXACT [] is_a: CL:0000838 ! lymphoid lineage restricted progenitor cell relationship: develops_from CL:0000051 ! common lymphoid progenitor relationship: part_of UBERON:0002370 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! thymus [Term] id: CL:0000828 name: thromboblast namespace: cell def: "A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates." [GOC:add, GOC:tfm, PMID:7758949] comment: Note that this is a non-mammalian cell type. is_a: CL:0000839 ! myeloid lineage restricted progenitor cell relationship: develops_from CL:0000050 ! megakaryocyte-erythroid progenitor cell [Term] id: CL:0000829 name: basophilic myeloblast namespace: cell def: "A myeloblast committed to the basophil lineage." [GOC:add, ISBN:0721601464] is_a: CL:0000835 ! myeloblast relationship: develops_from CL:0000613 ! basophil progenitor cell [Term] id: CL:0000830 name: basophilic promyelocyte namespace: cell def: "A promyelocyte committed to the basophil lineage." [GOC:add, ISBN:0721601464] xref: FMA:84208 is_a: CL:0000836 ! promyelocyte relationship: develops_from CL:0000829 ! basophilic myeloblast [Term] id: CL:0000831 name: mast cell progenitor namespace: cell def: "A progenitor cell of the mast cell lineage. Markers for this cell are FceRIa-low, CD117-positive, CD9-positive, T1/ST2-positive, SCA1-negative, and lineage-negative." [GOC:add, GOC:dsd, PMCID:PMC1183570, PMCID:PMC1312421, PMID:8629001, PMID:9354811, http://www.copewithcytokines.de] comment: MCP are CD16-positive, CD32-positive, CD34-positive, CD45-positive, integrin beta-7-positive, and lin-negative (CD2, CD3e, CD4, CD5, CD8a, CD14, CD19, CD20, CD27, integrin alpha-M, ly6c, ly6g, NCAM-1, and ter119). These cells also express the transcription factors GATA-1, GATA-2, and MITF, but not C/EBPa. synonym: "CFU-MC" RELATED [] synonym: "CFU-Mast " RELATED [] synonym: "MCP" EXACT [] synonym: "colony forming unit mast cell" RELATED [] is_a: CL:0000839 ! myeloid lineage restricted progenitor cell relationship: develops_from CL:0002028 ! basophil mast progenitor cell [Term] id: CL:0000832 name: eosinophilic myeloblast namespace: cell def: "A myeloblast committed to the eosinophil lineage." [GOC:add, ISBN:0721601464] is_a: CL:0000835 ! myeloblast relationship: develops_from CL:0000611 ! eosinophil progenitor cell [Term] id: CL:0000833 name: eosinophilic promyelocyte namespace: cell def: "A promyelocyte committed to the eosinophil lineage." [GOC:add, ISBN:0721601464] xref: FMA:84199 is_a: CL:0000836 ! promyelocyte relationship: develops_from CL:0000832 ! eosinophilic myeloblast [Term] id: CL:0000834 name: neutrophil progenitor cell namespace: cell def: "A progenitor cell of the neutrophil lineage." [GOC:add, GOC:tfm, ISBN:0721601464] synonym: "neutrophil stem cell" RELATED [] is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell [Term] id: CL:0000835 name: myeloblast namespace: cell def: "The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, a high nuclear-to-cytoplasmic ration (5:1-7:1), and a nongranular basophilic cytoplasm. They reside in the bone marrow." [GOC:add, ISBN:0721601464, http://www.cap.org] xref: BTO:0000187 xref: FMA:83524 is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell [Term] id: CL:0000836 name: promyelocyte namespace: cell def: "A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative." [GOC:add, GOC:amm, GOC:tfm, ISBN:0721601464, http://www.cap.org] xref: FMA:83530 is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0000835 ! myeloblast [Term] id: CL:0000837 name: hematopoietic multipotent progenitor cell namespace: cell def: "A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans." [GOC:add, GOC:tfm, PMID:19022770] comment: Markers differ between mouse and human. synonym: "MPP" EXACT [] synonym: "hemopoietic progenitor cell" EXACT [] xref: BTO:0000725 is_a: CL:0000988 ! hematopoietic cell relationship: develops_from CL:0000037 ! hematopoietic stem cell [Term] id: CL:0000838 name: lymphoid lineage restricted progenitor cell namespace: cell def: "A progenitor cell restricted to the lymphoid lineage." [GOC:add, GOC:tfm] comment: Note that this is a class of cell types, not an identified single cell type. synonym: "lymphoid progenitor cell" BROAD [] xref: BTO:0004731 xref: FMA:70338 is_a: CL:0002031 ! hematopoietic lineage restricted progenitor cell [Term] id: CL:0000839 name: myeloid lineage restricted progenitor cell namespace: cell def: "A progenitor cell restricted to the myeloid lineage." [GOC:add, GOC:tfm, PMID:19022770] comment: Note that this is a class of cell types, not an identified single cell type. synonym: "myeloid progenitor cell" BROAD [] xref: BTO:0004730 xref: FMA:70339 is_a: CL:0002031 ! hematopoietic lineage restricted progenitor cell [Term] id: CL:0000840 name: immature conventional dendritic cell namespace: cell def: "An immature cell of the conventional dendritic cell lineage, characterized by high levels of antigen uptake via endocytosis, macropinocytosis, and phagocytosis, and typically found resident in the tissues. Markers for this cell are CD80-low, CD86-low, and MHC-II-low." [GOC:add, GOC:tfm, PMID:9521319] synonym: "immature myeloid dendritic cell" NARROW [] is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0001029 ! common dendritic progenitor [Term] id: CL:0000841 name: mature conventional dendritic cell namespace: cell def: "A mature cell of the conventional dendritic cell lineage, characterized by a high capacity for antigen presentation and typically found in a lymph node." [GOC:add, GOC:tfm, PMID:9521319] synonym: "mature myeloid dendritic cell" NARROW [] xref: FMA:83038 is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0000840 ! immature conventional dendritic cell [Term] id: CL:0000842 name: mononuclear cell namespace: cell def: "A leukocyte with a single non-segmented nucleus in the mature form." [GOC:add] synonym: "peripheral blood mononuclear cell" NARROW [] xref: BTO:0000878 xref: FMA:86713 is_a: CL:0000738 ! leukocyte [Term] id: CL:0000843 name: follicular B cell namespace: cell def: "A resting mature B cell that has the phenotype IgM-positive, IgD-positive, CD23-positive and CD21-positive, and found in the B cell follicles of the white pulp of the spleen or the corticol areas of the peripheral lymph nodes. This cell type is also described as being CD19-positive, B220-positive, IgM-positive, AA4-negative, CD23-positive, CD43-negative, and CD5-negative." [GOC:add, ISBN:0781735149, PMCID:PMC2193793, http://www.immgen.org/index_content.html] synonym: "Fo B cell" EXACT [] is_a: CL:0000785 ! mature B cell [Term] id: CL:0000844 name: germinal center B cell namespace: cell def: "A rapidly cycling mature B cell that has distinct phenotypic characteristics and is involved in T-dependent immune responses and located typically in the germinal centers of lymph nodes. This cell type expresses Ly77 after activation." [GOC:add, GOC:tfm, ISBN:0781735149, http://www.immgen.org/index_content.html] is_a: CL:0000785 ! mature B cell relationship: develops_from CL:0000843 ! follicular B cell [Term] id: CL:0000845 name: marginal zone B cell namespace: cell def: "A mature B cell that is located in the marginal zone of the spleen with the phenotype CD23-negative and CD21-positive and expressing a B cell receptor usually reactive to bacterial cell wall components or senescent self components such as oxidized-LDL. This cell type is also described as being CD19-positive, B220-positive, IgM-high, AA4-negative, CD23-negative, CD21/35-high." [GOC:add, ISBN:0781735149, PMID:10933592, http://www.immgen.org/index_content.html] is_a: CL:0000785 ! mature B cell [Term] id: CL:0000846 name: vestibular dark cell namespace: cell def: "An epithelial cell of the vestibular sensory organ that is characterized by intense enzymatic activities and numerous basal membrane infoldings." [PMID:11223304] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000847 name: ciliated olfactory receptor neuron namespace: cell def: "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob." [PMID:16841163] synonym: "ciliated olfactory sensory neuron" EXACT [] synonym: "ciliated sensory neuron" EXACT [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000848 name: microvillous olfactory receptor neuron namespace: cell def: "An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli." [PMID:16841163] synonym: "microvillous olfactory sensory neuron" EXACT [] synonym: "microvillous sensory neuron" RELATED [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000849 name: crypt olfactory receptor neuron namespace: cell def: "An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli." [PMID:16841163] synonym: "crypt cell" EXACT [] synonym: "crypt olfactory sensory neuron" EXACT [] synonym: "crypt sensory neuron" EXACT [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000850 name: serotonergic neuron namespace: cell alt_id: CL:0000403 def: "A neuron that releases serotonin as a neurotransmitter." [SANBI:mhl] synonym: "5-HT neuron" EXACT [] synonym: "5-hydroxytryptamine neuron" EXACT [] synonym: "serotinergic neuron" RELATED [] xref: FBbt:00005133 xref: WBbt:0006837 is_a: CL:0000540 ! neuron [Term] id: CL:0000851 name: neuromast mantle cell namespace: cell def: "Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded." [ISBN:0125296509] is_a: CL:0000151 ! secretory cell relationship: part_of UBERON:0008904 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neuromast [Term] id: CL:0000852 name: neuromast support cell namespace: cell def: "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells." [ISBN:0125296509] is_a: CL:0000630 ! supportive cell relationship: part_of UBERON:0008904 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neuromast [Term] id: CL:0000853 name: olfactory epithelial support cell namespace: cell def: "Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons." [GOC:tfm, ISBN:0517223651, SANBI:mhl] synonym: "olfactory sustentacular cell" EXACT [] synonym: "supporting cell of olfactory epithelium" EXACT [] synonym: "sustentaculocyte of olfactory epithelium" EXACT [] xref: FMA:62302 is_a: CL:0000630 ! supportive cell is_a: CL:0002167 ! olfactory epithelial cell [Term] id: CL:0000854 name: interneuromast cell namespace: cell def: "Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts." [SANBI:mhl] is_a: CL:0000133 ! neurectodermal cell relationship: develops_from CL:0000032 ! neuroplacodal cell relationship: part_of UBERON:0002540 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! lateral line system [Term] id: CL:0000855 name: sensory hair cell namespace: cell def: "Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [SANBI:mhl] synonym: "hair cell" BROAD [] xref: BTO:0004744 is_a: CL:0000199 ! mechanoreceptor cell [Term] id: CL:0000856 name: neuromast hair cell namespace: cell def: "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." [SANBI:mhl] is_a: CL:0000855 ! sensory hair cell relationship: part_of UBERON:0008904 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neuromast [Term] id: CL:0000857 name: slow muscle myoblast namespace: cell def: "A skeletal muscle myoblast that differentiates into slow muscle fibers." [SANBI:mhl] is_a: CL:0000515 ! skeletal muscle myoblast [Term] id: CL:0000858 name: fast muscle myoblast namespace: cell def: "A skeletal muscle myoblast that differentiates into fast muscle fibers." [SANBI:mhl] is_a: CL:0000515 ! skeletal muscle myoblast [Term] id: CL:0000859 name: cementum secreting cell namespace: cell def: "A secretory cell that secretes cementum, a bony substance that covers the root of a tooth." [SANBI:mhl] is_a: CL:0000151 ! secretory cell [Term] id: CL:0000860 name: classical monocyte namespace: cell def: "A type of monocyte that responds rapidly to microbial stimuli by secreting cytokines and antimicrobial factors. This cell type is characterized by high expression of CCR2 in both rodents and humans, and of being larger size than non-classical monocytes." [GO_REF:0000031, PMID:16322748, PMID:18303997, PMID:20628149, PMID:20870168] comment: Markers: CCR2+CXCCR1 (human, mouse, rat). synonym: "inflammatory monocyte" EXACT [] is_a: CL:0000576 ! monocyte [Term] id: CL:0000861 name: elicited macrophage namespace: cell def: "A macrophage which develops from an inflammatory monocyte and is recruited into the tissues in response to injury and infection as part of an inflammatory response. Markers include CD11b-positive, CD68-positive, and F4/80-positive." [GOC:add, GOC:ana, GOC:tfm, GO_REF:0000031, PMID:15771589] comment: Markers: CD11b+, CD68+; Mouse: F4/80+; role or process: immune, inflammation (inflammatory response). synonym: "free macrophage" EXACT [] synonym: "wandering histiocyte" EXACT [] xref: FMA:84643 xref: FMA:84645 is_a: CL:0000235 ! macrophage relationship: develops_from CL:0000860 ! classical monocyte [Term] id: CL:0000862 name: suppressor macrophage namespace: cell def: "A macrophage that suppresses immune responses." [GOC:add, GOC:tfm, PMID:20402419] comment: Markers: May express: IL10, TGFbeta. is_a: CL:0000861 ! elicited macrophage [Term] id: CL:0000863 name: inflammatory macrophage namespace: cell def: "An elicited macrophage that is recruited into the tissues in response to injury and infection as part of an inflammatory response, expresses high levels of pro-inflammatory cytokines, ROS and NO, and shows potent microbicidal activity." [GOC:ana, GO_REF:0000031, PMID:19132917] comment: Markers: Express: TNFa, IL1b, IL6, iNOS, NADPH-oxidase; produce: reactive oxygen species, nitric oxide; role or process: immune, inflammation (inflammatory response). synonym: "M1 macrophage" RELATED [] synonym: "classically activated macrophage" EXACT [] is_a: CL:0000861 ! elicited macrophage [Term] id: CL:0000864 name: tissue-resident macrophage namespace: cell def: "A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GOC:ana, GO_REF:0000031, PMID:19770654] synonym: "fixed macrophage" EXACT [] synonym: "resting histiocyte" EXACT [] xref: FMA:84642 xref: FMA:84644 is_a: CL:0000235 ! macrophage [Term] id: CL:0000865 name: gastrointestinal tract (lamina propria) macrophage namespace: cell def: "A gut-associated lymphoid tissue macrophage found in lamina propria of the gut." [GOC:ana, GOC:tfm, GO_REF:0000031] is_a: CL:0000885 ! gut-associated lymphoid tissue macrophage [Term] id: CL:0000866 name: thymic macrophage namespace: cell def: "A tissue-resident macrophage resident found in the thymus, involved in the clearance of apoptotic thymocytes." [GOC:ana, GOC:tfm, GO_REF:0000031, PMID:9048205] comment: Role or process: immune, clearance of apoptotic thymocytes, antigen-presentation. is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0000867 name: secondary lymphoid organ macrophage namespace: cell def: "A tissue-resident macrophage found in a secondary lymphoid organ." [GOC:ana, GOC:tfm, GO_REF:0000031] is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0000868 name: lymph node macrophage namespace: cell def: "A secondary lymphoid organ macrophage found in a lymph node. This cell is CD169-high." [GOC:ana, GOC:tfm, GO_REF:0000031, PMID:11971865] comment: Marker was observed on rat cells. synonym: "MF.LN" EXACT [] is_a: CL:0000867 ! secondary lymphoid organ macrophage [Term] id: CL:0000869 name: tonsillar macrophage namespace: cell def: "A gut-associated lymphoid tissue macrophage found in tonsils." [GOC:ana, GO_REF:0000031, PMID:16048540] is_a: CL:0000884 ! mucosa-associated lymphoid tissue macrophage [Term] id: CL:0000870 name: Peyer's patch macrophage namespace: cell def: "A gut-associated lymphoid tissue macrophage found in the Peyer's patches." [GOC:ana, GOC:tfm, GO_REF:0000031] is_a: CL:0000885 ! gut-associated lymphoid tissue macrophage [Term] id: CL:0000871 name: splenic macrophage namespace: cell def: "A secondary lymphoid organ macrophage found in the spleen." [GO_REF:0000031, PMID:15771589, PMID:16322748] comment: Role or process: immune, clearance of apoptotic and senescent cells. xref: FMA:83026 is_a: CL:0000867 ! secondary lymphoid organ macrophage [Term] id: CL:0000872 name: splenic marginal zone macrophage namespace: cell def: "A splenic macrophage found in the marginal zone of the spleen, involved in recognition and clearance of particulate material from the splenic circulation. Markers include F4/80-negative, MARCO-positive, SR-A-positive, SIGN-R1-positive, and Dectin2-positive." [GOC:ana, GO_REF:0000031, PMID:16861066] comment: Markers: Mouse: F4/80-, MARCO+, SR-A+, SIGN-R1+, Dectin2+. is_a: CL:0000871 ! splenic macrophage [Term] id: CL:0000873 name: splenic metallophillic macrophage namespace: cell def: "A splenic macrophage found in the areas surrounding the white pulp of the spleen, adjacent to the marginal sinus. Markers include F4/80-negative, Dectin2-low, sialoadhesin-positive." [GOC:ana, GO_REF:0000031, PMID:20018690] comment: Markers: Mouse: F4/80-, Dectin2-low, sialoadhesin+. is_a: CL:0000871 ! splenic macrophage [Term] id: CL:0000874 name: splenic red pulp macrophage namespace: cell def: "A splenic macrophage found in the red-pulp of the spleen, and involved in immune responses to blood-borne pathogens and in the clearance of senescent erythrocytes. Markers include F4/80-positive, CD68-positive, MR-positive, Dectin2-positive, macrosialin-positive, and sialoadhesin-low." [GOC:ana, GO_REF:0000031, PMID:19644016] comment: Markers: Mouse: F4/80+, CD68+, MR+, Dectin2+, macrosialin+, sialoadhesin-low; role or process: immune, clearance of senescent erythrocytes. is_a: CL:0000871 ! splenic macrophage [Term] id: CL:0000875 name: non-classical monocyte namespace: cell def: "Subset of monocytes characterized by low expression of CCR2, low responsiveness to monocyte chemoattractant CCL2/MCP1, low phagocytic activity, but increased co-stimulatory activity. May also play a role in tissue repair." [GO_REF:0000031, PMID:16322748, PMID:18303997, PMID:20628149, PMID:20870168] comment: Markers: CCR2-CX3CCR1+ (human, mouse, rat); human: CD16+, CCR5+, CD32/FcgRII-high, MHCII+, CD86+; mouse: CD62L-Ly6C-. synonym: "patrolling monocyte" EXACT [] synonym: "resident monocyte" EXACT [] is_a: CL:0000576 ! monocyte [Term] id: CL:0000876 name: splenic white pulp macrophage namespace: cell def: "A splenic macrophage found in the white pulp of the spleen. Markers include F4/80-negative, CD68-positive, and macrosialin-positive." [GOC:ana, GO_REF:0000031, PMID:11207597] comment: Markers: Mouse: F4/80-, CD68+, macrosialin+. is_a: CL:0000871 ! splenic macrophage [Term] id: CL:0000877 name: splenic tingible body macrophage namespace: cell def: "A splenic white pulp macrophage found in and around the germinal centers of the white pulp of the spleen that participates in phagocytosis of apoptotic B cells from the germinal centers. A marker for a cell of this type is Mertk-positive." [GOC:ana, GOC:tfm, GO_REF:0000031, PMID:19631584] is_a: CL:0000876 ! splenic white pulp macrophage [Term] id: CL:0000878 name: central nervous system macrophage namespace: cell def: "A tissue-resident macrophage found in the central nervous system." [GO_REF:0000031, PMID:16322748] synonym: "CNS macrophage" EXACT [] is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0000879 name: meningeal macrophage namespace: cell def: "A central nervous system macrophage found in the meninges (the three membranes that surround the brain). This macrophage types is highly phagocytic and expresses scavenger receptors." [GOC:ana, GO_REF:0000031, PMID:11591794] is_a: CL:0000878 ! central nervous system macrophage [Term] id: CL:0000880 name: choroid-plexus macrophage namespace: cell def: "A central nervous system macrophage found at the interface between the blood and the cerebrospinal fluid in the brain. This cell expresses scavenger receptors." [GOC:ana, GO_REF:0000031, PMID:9550136] is_a: CL:0000878 ! central nervous system macrophage [Term] id: CL:0000881 name: perivascular macrophage namespace: cell def: "A central nervous system macrophage found in small blood vessels in the brain. Markers include CD14+CD16+CD163+." [GOC:tfm, GO_REF:0000031, PMID:16507898] comment: Markers: Human/monkey, mice: CD163. Human: CD14+CD16+CD163+. is_a: CL:0000878 ! central nervous system macrophage [Term] id: CL:0000882 name: thymic medullary macrophage namespace: cell def: "A thymic macrophage found in the thymic medulla." [GOC:ana, GO_REF:0000031, PMID:9048205] is_a: CL:0000866 ! thymic macrophage [Term] id: CL:0000883 name: thymic cortical macrophage namespace: cell def: "A thymic macrophage found in the thymic cortex." [GOC:ana, GOC:tfm, GO_REF:0000031, PMID:9048205] is_a: CL:0000866 ! thymic macrophage [Term] id: CL:0000884 name: mucosa-associated lymphoid tissue macrophage namespace: cell def: "A tissue-resident macrophage found in the mucosa associated lymphoid tissue." [GOC:ana, GOC:tfm, GO_REF:0000031, PMID:19906191] is_a: CL:0000867 ! secondary lymphoid organ macrophage [Term] id: CL:0000885 name: gut-associated lymphoid tissue macrophage namespace: cell def: "A mucosa-associated lymphoid tissue macrophage found in the mucosa-associated lymphoid tissues of the gut." [GOC:ana, GO_REF:0000031, PMID:19906191] is_a: CL:0000884 ! mucosa-associated lymphoid tissue macrophage [Term] id: CL:0000886 name: nasal and broncial associated lymphoid tissue macrophage namespace: cell def: "A mucosa-associated lymphoid tissue macrophage found in the nasal and bronchial mucosa-associated lymphoid tissues." [GOC:ana, GO_REF:0000031, PMID:16048540] is_a: CL:0000884 ! mucosa-associated lymphoid tissue macrophage [Term] id: CL:0000887 name: lymph node subcapsular sinus macrophage namespace: cell def: "A lymph node macrophage found in the subcapsular sinus of lymph nodes that participates in sensing, clearance, and antigen presentation of lymph-borne particulate antigens. This macrophage is capable of activating invaraint NKT cells and is CD169-positive." [GOC:tfm, GO_REF:0000031, PMID:14668803, PMID:17934446, PMID:20228797] is_a: CL:0000868 ! lymph node macrophage [Term] id: CL:0000888 name: lymph node tingible body macrophage namespace: cell def: "A lymph node macrophage found in the cortex of lymph nodes, in particular in and around the germinal centers, and that participates in phagocytosis of apoptotic B cells from the germinal centers." [GOC:ana, GOC:tfm, GO_REF:0000031, PMID:19631584] is_a: CL:0000868 ! lymph node macrophage [Term] id: CL:0000889 name: myeloid suppressor cell namespace: cell def: "An immature myeloid leukocyte of heterogeneous phenotype found particularly in cancer and sepsis patients that is capable of suppressing activity of T cells in ex vivo assays. This cell type is CD45-positive, CD11b-positive." [GOC:add, GOC:ana, GO_REF:0000031, PMID:16168663, PMID:17016554, PMID:17016559] comment: Markers: Mouse: CD11b+GR1+CD31+; Human: CD34+ CD33+CD15-CD13+. (According to some reports in humans these cells are iNOS+ARG1+IL13+IFNg+); location: In cancerous tissue; in the blood and lymphoid organs in sepsis. is_a: CL:0000766 ! myeloid leukocyte [Term] id: CL:0000890 name: alternatively activated macrophage namespace: cell def: "An elicited macrophage characterized by low production of pro-inflammatory and Th1 polarizing cytokines and high expression of arginase-1, and associated with tissue remodelling." [GOC:ana, GOC:tfm, GO_REF:0000031, PMID:20510870] comment: Role or process: tissue remodeling. synonym: "M2 macrophage" RELATED [] is_a: CL:0000861 ! elicited macrophage [Term] id: CL:0000891 name: foam cell namespace: cell def: "A type of cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions." [GOC:add] xref: BTO:0003872 xref: FMA:83586 is_a: CL:0000063 ! cell by histology [Term] id: CL:0000892 name: smooth muscle cell derived foam cell namespace: cell def: "A type of foam cell derived from a smooth muscle cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions." [GOC:add] is_a: CL:0000891 ! foam cell relationship: develops_from CL:0000192 ! smooth muscle cell [Term] id: CL:0000893 name: thymocyte namespace: cell def: "An immature T cell located in the thymus." [GOC:add, GOC:tfm, GO_REF:0000031, PMID:12415312] synonym: "immature T cell" BROAD [] synonym: "immature T lymphocyte" BROAD [] synonym: "immature T-cell" BROAD [] synonym: "immature T-lymphocyte" BROAD [] synonym: "thymic lymphocyte" EXACT [] xref: BTO:0001372 xref: FMA:72202 xref: XAO:0003159 is_a: CL:0002420 ! immature T cell [Term] id: CL:0000894 name: DN1 thymic pro-T cell namespace: cell def: "A pro-T cell that has the phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-negative." [GOC:add, GOC:tfm, GO_REF:0000031] synonym: "DN1 thymic pro-T lymphocyte" EXACT [] synonym: "DN1 thymic pro-T-cell" EXACT [] synonym: "DN1 thymic pro-T-lymphocyte" EXACT [] synonym: "DN1 thymic progenitor T cell" EXACT [] synonym: "DN1 thymocyte" EXACT [] synonym: "double negative 1" EXACT [] synonym: "preT.DN1.Th" EXACT [] is_a: CL:0000827 ! pro-T cell relationship: develops_from CL:0002425 ! early T lineage precursor [Term] id: CL:0000895 name: naive thymus-derived CD4-positive, alpha-beta T cell namespace: cell def: "An antigen inexperienced CD4-positive, alpha-beta T cell with the phenotype CCR7-positive, CD127-positive and CD62L-positive. This cell type develops in the thymus. This cell type is also described as being CD25-negative, CD62L-high, and CD44-low." [GOC:add, GOC:tfm, GO_REF:0000031, PMID:19100699, http://www.immgen.org/index_content.html] comment: These cells have not been exposed to antigen following thymic T-cell selection; found in blood and secondary lymphoid organs. synonym: "T.4Nve.Sp" EXACT [] synonym: "Th0" EXACT [GOC:tfm] synonym: "naive thymus-derived CD4-positive, alpha-beta T lymphocyte" EXACT [] synonym: "naive thymus-derived CD4-positive, alpha-beta T-cell" EXACT [] synonym: "naive thymus-derived CD4-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0002436 ! mature CD4 single-positive thymocyte [Term] id: CL:0000896 name: activated CD4-positive, alpha-beta T cell namespace: cell def: "A recently activated CD4-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, and CD25-positive." [GOC:add, GOC:pam, GO_REF:0000031] synonym: "activated CD4-positive, alpha-beta T lymphocyte" EXACT [] synonym: "activated CD4-positive, alpha-beta T-cell" EXACT [] synonym: "activated CD4-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0000895 ! naive thymus-derived CD4-positive, alpha-beta T cell [Term] id: CL:0000897 name: CD4-positive, alpha-beta memory T cell namespace: cell def: "CD4-positive, alpha-beta long-lived T cell with the phenotype CD45RO-positive and CD127-positive. This cell type is also described as being CD25-negative, CD44-high, and CD122- high." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149, http://www.immgen.org/index_content.html] synonym: "CD4-positive, alpha-beta memory T lymphocyte" EXACT [] synonym: "CD4-positive, alpha-beta memory T-cell" EXACT [] synonym: "CD4-positive, alpha-beta memory T-lymphocyte" EXACT [] synonym: "T4.Mem.Sp" RELATED [] is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0000898 name: naive T cell namespace: cell def: "Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19100699] synonym: "naive T lymphocyte" EXACT [] synonym: "naive T-cell" EXACT [] synonym: "naive T-lymphocyte" EXACT [] is_a: CL:0002419 ! mature T cell [Term] id: CL:0000899 name: T-helper 17 cell namespace: cell def: "CD4-positive, alpha-beta T cell with the phenotype RORgamma-t-positive that produces IL-17." [GOC:add, GOC:pam, GO_REF:0000031, PMID:20303875] synonym: "Th17 T cell" EXACT [] synonym: "Th17 T lymphocyte" EXACT [] synonym: "Th17 T-cell" EXACT [] synonym: "Th17 T-lymphocyte" EXACT [] synonym: "Th17 cell" EXACT [] synonym: "helper T cell type 17" EXACT [] is_a: CL:0000492 ! CD4-positive helper T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0000900 name: naive thymus-derived CD8-positive, alpha-beta T cell namespace: cell def: "A CD8-positive, alpha-beta T cell that has not experienced activation via antigen contact and has the phenotype CD45RA-positive, CCR7-positive and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0781735149, http://www.immgen.org/index_content.html] comment: Additional markers in human are CD45RA. This cell traffics in secondary lymphoid organs and blood. synonym: "T.8Nve.Sp" NARROW [] synonym: "naive thymus-dervied CD8-positive, alpha-beta T lymphocyte" EXACT [] synonym: "naive thymus-dervied CD8-positive, alpha-beta T-cell" EXACT [] synonym: "naive thymus-dervied CD8-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000625 ! CD8-positive, alpha-beta T cell relationship: develops_from CL:0002437 ! mature CD8 single-positive thymocyte [Term] id: CL:0000901 name: Tr1 cell namespace: cell def: "CD4-positive alpha-beta T cell with regulatory function that produces IL-10." [GOC:add, GOC:pam, GO_REF:0000031] synonym: "T-regulatory T cell type 1" EXACT [] synonym: "Tr1 T cell" EXACT [] synonym: "Tr1 T lymphocyte" EXACT [] synonym: "Tr1 T-cell" EXACT [] synonym: "Tr1 T-lymphocyte" EXACT [] is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0000902 name: induced T-regulatory cell namespace: cell def: "CD4-positive alpha-beta T cell with the phenotype CD25-positive, CTLA-4-positive, and FoxP3-positive with regulatory function." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19464985] synonym: "aTreg" RELATED [] synonym: "adaptive Treg" RELATED [] synonym: "iTreg" EXACT [] synonym: "induced Treg" EXACT [] synonym: "induced regulatory T cell" EXACT [] synonym: "induced regulatory T lymphocyte" EXACT [] synonym: "induced regulatory T-cell" EXACT [] synonym: "induced regulatory T-lymphocyte" EXACT [] is_a: CL:0000792 ! CD4-positive, CD25-positive, alpha-beta regulatory T cell [Term] id: CL:0000903 name: natural T-regulatory cell namespace: cell def: "CD4-positive alpha-beta T cell with the phenotype FoxP3-positive, CD25-positive, CD62L-positive, and CTLA-4 positive with regulatory function." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19464985] synonym: "nTreg" EXACT [] synonym: "natural Treg" EXACT [] synonym: "natural regulatory T cell" EXACT [] synonym: "natural regulatory T lymphocyte" EXACT [] synonym: "natural regulatory T-cell" EXACT [] synonym: "natural regulatory T-lymphocyte" EXACT [] is_a: CL:0000792 ! CD4-positive, CD25-positive, alpha-beta regulatory T cell [Term] id: CL:0000904 name: central memory CD4-positive, alpha-beta T cell namespace: cell def: "CD4-positive, alpha-beta memory T cell with the phenotype CCR7-positive, CD127-positive, CD45RO-positive, and CD25-negative." [GOC:add, GOC:pam, GO_REF:0000031] synonym: "central CD4-positive, alpha-beta memory T cell" EXACT [] synonym: "central CD4-positive, alpha-beta memory T lymphocyte" EXACT [] synonym: "central CD4-positive, alpha-beta memory T-cell" EXACT [] synonym: "central CD4-positive, alpha-beta memory T-lymphocyte" EXACT [] synonym: "central memory CD4-positive, alpha-beta T lymphocyte" EXACT [] synonym: "central memory CD4-positive, alpha-beta T-cell" EXACT [] synonym: "central memory CD4-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000897 ! CD4-positive, alpha-beta memory T cell [Term] id: CL:0000905 name: effector memory CD4-positive, alpha-beta T cell namespace: cell def: "CD4-positive, alpha-beta memory T cell with the phenotype CCR7-negative, CD127-positive, CD45RO-positive, and CD25-negative." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031] synonym: "effector CD4-positive, alpha-beta memory T cell" EXACT [] synonym: "effector CD4-positive, alpha-beta memory T lymphocyte" EXACT [] synonym: "effector CD4-positive, alpha-beta memory T-cell" EXACT [] synonym: "effector CD4-positive, alpha-beta memory T-lymphocyte" EXACT [] synonym: "effector memory CD4-positive, alpha-beta T lymphocyte" EXACT [] synonym: "effector memory CD4-positive, alpha-beta T-cell" EXACT [] synonym: "effector memory CD4-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000897 ! CD4-positive, alpha-beta memory T cell [Term] id: CL:0000906 name: activated CD8-positive, alpha-beta T cell namespace: cell def: "A CD8-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, CD25-positive, and CCR7-negative." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031] synonym: "activated CD8-positive, alpha-beta T lymphocyte" EXACT [] synonym: "activated CD8-positive, alpha-beta T-cell" EXACT [] synonym: "activated CD8-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000625 ! CD8-positive, alpha-beta T cell relationship: develops_from CL:0000900 ! naive thymus-derived CD8-positive, alpha-beta T cell [Term] id: CL:0000907 name: central memory CD8 positive, alpha-beta T cell namespace: cell def: "A CD8-positive, alpha beta memory T cell with the phenotype CCR7-positive, CD127-positive, CD45RO-positive, and CD25-negative." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:20146720] synonym: "central CD8-positive, alpha-beta memory T cell" EXACT [] synonym: "central CD8-positive, alpha-beta memory T lymphocyte" EXACT [] synonym: "central CD8-positive, alpha-beta memory T-cell" EXACT [] synonym: "central CD8-positive, alpha-beta memory T-lymphocyte" EXACT [] synonym: "central memory CD8-positive, alpha-beta T lymphocyte" EXACT [] synonym: "central memory CD8-positive, alpha-beta T-cell" EXACT [] synonym: "central memory CD8-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000909 ! CD8-positive, alpha-beta memory T cell [Term] id: CL:0000908 name: CD8-positive, alpha-beta cytokine secreting effector T cell namespace: cell def: "A CD8-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, and CD25-positive, that secretes cytokines." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:20146720] synonym: "CD8-positive, alpha-beta cytokine secreting effector T lymphocyte" EXACT [] synonym: "CD8-positive, alpha-beta cytokine secreting effector T-cell" EXACT [] synonym: "CD8-positive, alpha-beta cytokine secreting effector T-lymphocyte" EXACT [] is_a: CL:0000625 ! CD8-positive, alpha-beta T cell relationship: develops_from CL:0000906 ! activated CD8-positive, alpha-beta T cell [Term] id: CL:0000909 name: CD8-positive, alpha-beta memory T cell namespace: cell def: "A CD8-positive, alpha-beta T cell with memory phenotype indicated by being CD45RO and CD127-positive. This cell type is also described as being CD25-negative, CD44-high, and CD122- high." [GOC:tfm, GO_REF:0000031, PMID:20146720] synonym: "CD8-positive, alpha-beta memory T lymphocyte" EXACT [] synonym: "CD8-positive, alpha-beta memory T-cell" EXACT [] synonym: "CD8-positive, alpha-beta memory T-lymphocyte" EXACT [] synonym: "T.8Mem.Sp" EXACT [] is_a: CL:0000625 ! CD8-positive, alpha-beta T cell relationship: develops_from CL:0000906 ! activated CD8-positive, alpha-beta T cell [Term] id: CL:0000910 name: cytotoxic T cell namespace: cell def: "A mature T cell that differentiated and acquired cytotoxic function with the phenotype perforin-positive and granzyme-B positive." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:18395547] synonym: "cytotoxic T lymphocyte" EXACT [] synonym: "cytotoxic T-cell" EXACT [] synonym: "cytotoxic T-lymphocyte" EXACT [] xref: BTO:0000289 xref: FMA:70573 is_a: CL:0000911 ! effector T cell [Term] id: CL:0000911 name: effector T cell namespace: cell def: "A differentiated T cell with ability to traffic to peripheral tissues and is capable of mounting a specific immune response." [GOC:PAM-ADD, GOC:tfm, ISBN:0877799148, PMID:18395547] synonym: "effector T lymphocyte" EXACT [] synonym: "effector T-cell" EXACT [] synonym: "effector T-lymphocyte" EXACT [] is_a: CL:0002419 ! mature T cell [Term] id: CL:0000912 name: helper T cell namespace: cell def: "A effector T cell that provides help in the form of secreted cytokines to other immune cells." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:18395547] synonym: "T-helper cell" EXACT [] synonym: "helper T lymphocyte" EXACT [] synonym: "helper T-cell" EXACT [] synonym: "helper T-lymphocyte" EXACT [] xref: BTO:0002417 is_a: CL:0000911 ! effector T cell [Term] id: CL:0000913 name: effector memory CD8-positive, alpha-beta T cell namespace: cell def: "A CD8-positive, alpha beta memory T cell with the phenotype CCR7-negative, CD127-positive, CD45RO-positive, and CD25-negative." [GOC:add, GOC:pam, GO_REF:0000031, PMID:20146720] synonym: "effector CD8-positive, alpha-beta memory T cell" EXACT [] synonym: "effector CD8-positive, alpha-beta memory T lymphocyte" EXACT [] synonym: "effector CD8-positive, alpha-beta memory T-cell" EXACT [] synonym: "effector CD8-positive, alpha-beta memory T-lymphocyte" EXACT [] synonym: "effector memory CD8-positive, alpha-beta T lymphocyte" EXACT [] synonym: "effector memory CD8-positive, alpha-beta T-cell" EXACT [] synonym: "effector memory CD8-positive, alpha-beta T-lymphocyte" EXACT [] is_a: CL:0000909 ! CD8-positive, alpha-beta memory T cell [Term] id: CL:0000914 name: immature NK T cell namespace: cell def: "An immature alpha-beta T-cell that express Egr2. These cells give rise to T cells expressing NK markers." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17589542, PMID:19169262] synonym: "immature NK T lymphocyte" EXACT [] synonym: "immature NK T-cell" EXACT [] synonym: "immature NK T-lymphocyte" EXACT [] synonym: "immature NKT cell" EXACT [] is_a: CL:0000790 ! immature alpha-beta T cell relationship: develops_from CL:0000809 ! double-positive, alpha-beta thymocyte [Term] id: CL:0000915 name: CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell namespace: cell def: "An alpha-beta intraepithelial T cell with the phenotype CD8-alpha-alpha-positive located in the columnar epithelium of the gastrointestinal tract. These cells have a memory phenotype of CD2-negative and CD5-negative." [GOC:add, GOC:pam, GO_REF:0000031, PMID:11685222] synonym: "CD8-alpha-alpha-positive, alpha-beta intraepithelial T lymphocyte" EXACT [] synonym: "CD8-alpha-alpha-positive, alpha-beta intraepithelial T-cell" EXACT [] synonym: "CD8-alpha-alpha-positive, alpha-beta intraepithelial T-lymphocyte" EXACT [] is_a: CL:0000797 ! alpha-beta intraepithelial T cell relationship: develops_from CL:0000811 ! CD8-positive, alpha-beta thymocyte [Term] id: CL:0000916 name: dendritic epidermal T cell namespace: cell def: "A mature gamma-delta T cell located in the epidermis that regulates wound healing." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:11976459] comment: In mice, DETC have an invariant T cell receptor. synonym: "DETC" EXACT [] synonym: "dendritic epidermal T lymphocyte" EXACT [] synonym: "dendritic epidermal T-cell" EXACT [] synonym: "dendritic epidermal T-lymphocyte" EXACT [] is_a: CL:0000800 ! mature gamma-delta T cell relationship: develops_from CL:0002401 ! mature dendritic epithelial T cell precursor [Term] id: CL:0000917 name: Tc1 cell namespace: cell def: "A CD8-positive, alpha-beta positive T cell expressing T-bet and eomesodermin and secreting interferon-gamma." [GOC:add, GOC:pam, GO_REF:0000031, PMID:9914231] synonym: "T-cytotoxic T cell type 1" EXACT [] synonym: "Tc1 T cell" EXACT [] synonym: "Tc1 T lymphocyte" EXACT [] synonym: "Tc1 T-cell" EXACT [] synonym: "Tc1 T-lymphocyte" EXACT [] xref: BTO:0004793 xref: BTO:0004888 xref: FMA:84793 is_a: CL:0000908 ! CD8-positive, alpha-beta cytokine secreting effector T cell [Term] id: CL:0000918 name: Tc2 cell namespace: cell def: "A CD8-positive, alpha-beta positive T cell expressing GATA-3 and secreting IL-4." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:9914231] synonym: "T-cytotoxic T cell type 2" EXACT [] synonym: "Tc2 T cell" EXACT [] synonym: "Tc2 T lymphocyte" EXACT [] synonym: "Tc2 T-cell" EXACT [] synonym: "Tc2 T-lymphocyte" EXACT [] xref: BTO:0004794 xref: FMA:84794 is_a: CL:0000908 ! CD8-positive, alpha-beta cytokine secreting effector T cell [Term] id: CL:0000919 name: CD8-positive, CD25-positive, alpha-beta regulatory T cell namespace: cell def: "A CD8-positive alpha beta-positive T cell with the phenotype FoxP3-positive and having suppressor function." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19118505] synonym: "CD8-positive, CD25-positive, alpha-beta regulatory T lymphocyte" EXACT [] synonym: "CD8-positive, CD25-positive, alpha-beta regulatory T-cell" EXACT [] synonym: "CD8-positive, CD25-positive, alpha-beta regulatory T-lymphocyte" EXACT [] is_a: CL:0000795 ! CD8-positive, alpha-beta regulatory T cell relationship: develops_from CL:0000906 ! activated CD8-positive, alpha-beta T cell [Term] id: CL:0000920 name: CD8-positive, CD28-negative, alpha-beta regulatory T cell namespace: cell def: "CD8-positive, alpha-beta positive regulatory T cell with the phenotype CD28-negative and FoxP3-positive." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19118505] synonym: "CD8-positive, CD28-negative, alpha-beta regulatory T lymphocyte" EXACT [] synonym: "CD8-positive, CD28-negative, alpha-beta regulatory T-cell" EXACT [] synonym: "CD8-positive, CD28-negative, alpha-beta regulatory T-lymphocyte" EXACT [] is_a: CL:0000795 ! CD8-positive, alpha-beta regulatory T cell relationship: develops_from CL:0000906 ! activated CD8-positive, alpha-beta T cell [Term] id: CL:0000921 name: type I NK T cell namespace: cell def: "An alpha-beta T cell expressing NK cell markers that is CD1d restricted and expresses specific V-alpha chains. NK T cells of this type recognize the glycolipid alpha-galactosylceramide in the context of CD1d." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:15039760] comment: In mouse the canonical TCR is V-alpha-14, and in humans it is V-alpha 24. synonym: "classical NK T cell" EXACT [] synonym: "invariant NK T cell" RELATED [] synonym: "type I NK T lymphocyte" EXACT [] synonym: "type I NK T-cell" EXACT [] synonym: "type I NK T-lymphocyte" EXACT [] synonym: "type I NKT cell" EXACT [] is_a: CL:0000814 ! mature NK T cell [Term] id: CL:0000922 name: type II NK T cell namespace: cell def: "An alpha-beta T cell expressing NK call markers that is CD1d restricted and expresses a diverse TCR repertoire. Type II NKT cells do not become activated by alpha-galactosylceramide when presented by CD1d." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:15039760] synonym: "type II NK T lymphocyte" EXACT [] synonym: "type II NK T-cell" EXACT [] synonym: "type II NK T-lymphocyte" EXACT [] synonym: "type II NKT cell" EXACT [] is_a: CL:0000814 ! mature NK T cell [Term] id: CL:0000923 name: CD4-positive type I NK T cell namespace: cell def: "A type I NK T cell that has the phenotype CD4-positive." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17303398] synonym: "CD4-positive type I NK T lymphocyte" EXACT [] synonym: "CD4-positive type I NK T-cell" EXACT [] synonym: "CD4-positive type I NK T-lymphocyte" EXACT [] synonym: "CD4-positive type I NKT cell" EXACT [] synonym: "NKT.4+.SP" NARROW [] is_a: CL:0000921 ! type I NK T cell [Term] id: CL:0000924 name: CD4-negative, CD8-negative type I NK T cell namespace: cell def: "A type I NK T cell that has the phenotype CD4-negative and CD8-negative." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:18997862] synonym: "CD4-negative, CD8-negative type I NK T lymphocyte" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T-cell" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T-lymphocyte" EXACT [] synonym: "CD4-negative, CD8-negative type I NKT cell" EXACT [] synonym: "NKT.4-.Sp" NARROW [] is_a: CL:0000921 ! type I NK T cell [Term] id: CL:0000925 name: activated CD4-positive type I NK T cell namespace: cell def: "A type I NK T cell that has been recently activated, secretes interferon-gamma and IL-4, and has the phenotype CD4-positive, CD69-positive, and downregulated NK markers." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17303398] synonym: "activated CD4-positive type I NK T lymphocyte" EXACT [] synonym: "activated CD4-positive type I NK T-cell" EXACT [] synonym: "activated CD4-positive type I NK T-lymphocyte" EXACT [] synonym: "activated CD4-positive type I NKT cell" EXACT [] is_a: CL:0000921 ! type I NK T cell relationship: develops_from CL:0000923 ! CD4-positive type I NK T cell [Term] id: CL:0000926 name: CD4-positive type I NK T cell secreting interferon-gamma namespace: cell def: "A mature NK T cell that secretes interferon-gamma and enhances type 1 immune responses." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17303398] synonym: "CD4-positive type I NK T cell secreting IFN-gamma" EXACT [] synonym: "CD4-positive type I NK T lymphocyte secreting interferon-gamma" EXACT [] synonym: "CD4-positive type I NK T-cell secreting interferon-gamma" EXACT [] synonym: "CD4-positive type I NK T-lymphocyte secreting interferon-gamma" EXACT [] synonym: "CD4-positive type I NKT cell secreting interferon-gamma" EXACT [] is_a: CL:0000921 ! type I NK T cell relationship: develops_from CL:0000925 ! activated CD4-positive type I NK T cell [Term] id: CL:0000927 name: CD4-positive type I NK T cell secreting interleukin-4 namespace: cell def: "A mature NK T cell that predominantly secretes type 2 cytokines such as interleukin-4 and interleukin-13 and enhances type 2 immune responses." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031] synonym: "CD4-positive type I NK T cell secreting IL-4" EXACT [] synonym: "CD4-positive type I NK T lymphocyte secreting interleukin-4" EXACT [] synonym: "CD4-positive type I NK T-cell secreting interleukin-4" EXACT [] synonym: "CD4-positive type I NK T-lymphocyte secreting interleukin-4" EXACT [] synonym: "CD4-positive type I NKT cell secreting interleukin-4" EXACT [] is_a: CL:0000921 ! type I NK T cell relationship: develops_from CL:0000925 ! activated CD4-positive type I NK T cell [Term] id: CL:0000928 name: activated CD4-negative, CD8-negative type I NK T cell namespace: cell def: "A type I NK T cell that has been recently activated, secretes interferon-gamma and interleukin-4, and has phenotype CD4-negative, CD8-negative, CD69-positive, and downregulated NK markers." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17303398] synonym: "activated CD4-negative, CD8-negative type I NK T lymphocyte" EXACT [] synonym: "activated CD4-negative, CD8-negative type I NK T-cell" EXACT [] synonym: "activated CD4-negative, CD8-negative type I NK T-lymphocyte" EXACT [] synonym: "activated CD4-negative, CD8-negative type I NKT cell" EXACT [] is_a: CL:0000921 ! type I NK T cell relationship: develops_from CL:0000924 ! CD4-negative, CD8-negative type I NK T cell [Term] id: CL:0000929 name: CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma namespace: cell def: "A mature NK T cell that secretes interferon-gamma and enhances Th1 immune responses." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17303398] synonym: "CD4-negative, CD8-negative type I NK T cell secreting IFN-gamma" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T lymphocyte secreting interferon-gamma" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T-cell secreting interferon-gamma" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T-lymphocyte secreting interferon-gamma" EXACT [] synonym: "CD4-negative, CD8-negative type I NKT cell secreting interferon-gamma" EXACT [] is_a: CL:0000921 ! type I NK T cell relationship: develops_from CL:0000928 ! activated CD4-negative, CD8-negative type I NK T cell [Term] id: CL:0000930 name: CD4-negative, CD8-negative type I NK T cell secreting interleukin-4 namespace: cell def: "A mature NK T cell that secretes interleukin-4 and enhances Th2 immune responses." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17303398] synonym: "CD4-negative, CD8-negative type I NK T cell secreting IL-4" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T lymphocyte secreting interleukin-4" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T-cell secreting interleukin-4" EXACT [] synonym: "CD4-negative, CD8-negative type I NK T-lymphocyte secreting interleukin-4" EXACT [] synonym: "CD4-negative, CD8-negative type I NKT cell secreting interleukin-4" EXACT [] is_a: CL:0000921 ! type I NK T cell relationship: develops_from CL:0000928 ! activated CD4-negative, CD8-negative type I NK T cell [Term] id: CL:0000931 name: activated type II NK T cell namespace: cell def: "A type II NK T cell that has been recently activated, secretes interferon-gamma and interleukin-4, and has the phenotype CD69-positive and downregulated NK markers." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17964217] synonym: "activated type II NK T lymphocyte" EXACT [] synonym: "activated type II NK T-cell" EXACT [] synonym: "activated type II NK T-lymphocyte" EXACT [] synonym: "activated type II NKT cell" EXACT [] is_a: CL:0000922 ! type II NK T cell [Term] id: CL:0000932 name: type II NK T cell secreting interferon-gamma namespace: cell def: "A type II NK T cell that has been recently activated, secretes interferon-gamma, and has the phenotype CD69-positive and downregulated NK markers." [GOC:add, GOC:pam, GO_REF:0000031, PMID:17964217] synonym: "type II NK T cell secreting IFN-gamma" EXACT [] synonym: "type II NK T lymphocyte secreting interferon-gamma" EXACT [] synonym: "type II NK T-cell secreting interferon-gamma" EXACT [] synonym: "type II NK T-lymphocyte secreting interferon-gamma" EXACT [] synonym: "type II NKT cell secreting interferon-gamma" EXACT [] is_a: CL:0000922 ! type II NK T cell relationship: develops_from CL:0000931 ! activated type II NK T cell [Term] id: CL:0000933 name: type II NK T cell secreting interleukin-4 namespace: cell def: "A type II NK T cell that has been recently activated, secretes interleukin-4, and has the phenotype CD69-positive and downregulated NK markers." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:17964217] synonym: "type II NK T cell secreting IL-4" EXACT [] synonym: "type II NK T lymphocyte secreting interleukin-4" EXACT [] synonym: "type II NK T-cell secreting interleukin-4" EXACT [] synonym: "type II NK T-lymphocyte secreting interleukin-4" EXACT [] synonym: "type II NKT cell secreting interleukin-4" EXACT [] is_a: CL:0000922 ! type II NK T cell relationship: develops_from CL:0000931 ! activated type II NK T cell [Term] id: CL:0000934 name: CD4-positive, alpha-beta cytotoxic T cell namespace: cell def: "A CD4-positive, alpha-beta T cell that has cytotoxic function." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:18440213] synonym: "CD4-positive, alpha-beta cytotoxic T lymphocyte" EXACT [] synonym: "CD4-positive, alpha-beta cytotoxic T-cell" EXACT [] synonym: "CD4-positive, alpha-beta cytotoxic T-lymphocyte" EXACT [] is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0000935 name: CD4-negative, CD8-negative, alpha-beta intraepithelial T cell namespace: cell def: "A CD4-negative, CD8-negative, alpha-beta intraepithelial T cell that is found in the columnar epithelium of the gastrointestinal tract." [GOC:add, GOC:pam, GO_REF:0000031, PMID:11685222] synonym: "CD4-negative, CD8-negative, alpha-beta intraepithelial T lymphocyte" EXACT [] synonym: "CD4-negative, CD8-negative, alpha-beta intraepithelial T-cell" EXACT [] synonym: "CD4-negative, CD8-negative, alpha-beta intraepithelial T-lymphocyte" EXACT [] is_a: CL:0000797 ! alpha-beta intraepithelial T cell [Term] id: CL:0000936 name: early lymphoid progenitor namespace: cell def: "A lymphoid progenitor cell that is found in bone marrow, gives rise to B cells, T cells, natural killer cells and dendritic cells, and has the phenotype Lin-negative, Kit-positive, Sca-1-positive, FLT3-positive, CD34-positive, CD150 negative, and GlyA-negative." [GOC:add, GOC:dsd, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19022770] comment: Markers are associated with mouse cells. ELP transcription factors include E2A-positive, Ikaros-positive, EBF-negative, Pax5-negative, PU.1-negative. synonym: "ELP" EXACT [] synonym: "GMLP" RELATED [PMID:18371378] synonym: "LMPP" EXACT [] synonym: "lymphoid-primed multipotent progenitor" EXACT [] is_a: CL:0000837 ! hematopoietic multipotent progenitor cell relationship: develops_from CL:0002035 ! Slamf1-negative multipotent progenitor cell [Term] id: CL:0000937 name: pre-natural killer cell namespace: cell def: "Cell committed to natural killer cell lineage that has the phenotype CD122-positive, CD34-positive, and CD117-positive. This cell type lacks expression of natural killer receptor proteins." [GOC:add, GOC:dsd, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:16551251, PMID:17100874] comment: These cells are also reportedly CD7-low, CD10-negative, CD45RA-positive, alpha-4-beta-7 integrin-high. synonym: "pre-NK cell" EXACT [] is_a: CL:0000623 ! natural killer cell [Term] id: CL:0000938 name: CD56-bright cytokine secreting natural killer cell namespace: cell def: "NK cell that has the phenotype CD56-bright, CD16-negative, and CD84-positive with the function to secrete interferon-gamma but is not cytotoxic." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19796267] comment: Markers are associated with human cell types. synonym: "CD56-bright cytokine secreting NK cell" EXACT [] is_a: CL:0000824 ! mature natural killer cell [Term] id: CL:0000939 name: cytotoxic CD56-dim natural killer cell namespace: cell def: "A mature natural killer cell that has the phenotype CD56-low and CD16-positive and is capable of cytotoxic function and cytokine production." [GOC:add, GOC:pam, GO_REF:0000031, PMID:19796267] comment: This population is mainly found in human. synonym: "cytotoxic CD56-dim NK cell" EXACT [] is_a: CL:0000824 ! mature natural killer cell [Term] id: CL:0000940 name: mucosal invariant T cell namespace: cell def: "An alpha-beta T cell that is found in the lamina propria of mucosal tissues and is restricted by the MR-1 molecule." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19416870] synonym: "mucosal invariant T lymphocyte" EXACT [] synonym: "mucosal invariant T-cell" EXACT [] synonym: "mucosal invariant T-lymphocyte" EXACT [] is_a: CL:0000791 ! mature alpha-beta T cell [Term] id: CL:0000941 name: thymic conventional dendritic cell namespace: cell def: "A dendritic cell arising in thymus that has the phenotype CD11c-positive, CD11b-negative, and CD45RA-negative." [GOC:add, GOC:pam, GO_REF:0000031, PMID:19273629] comment: In the mouse this cell expresses CD8-alpha-alpha. is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0000894 ! DN1 thymic pro-T cell [Term] id: CL:0000942 name: thymic plasmacytoid dendritic cell namespace: cell def: "A plasmacytoid dendritic cell developing in the thymus with phenotype CD11c-negative or low, CD45RA-positive, CD11b-negative, and CD123-positive." [GOC:add, GOC:pam, GOC:tfm, GO_REF:0000031, PMID:19941119] is_a: CL:0000784 ! plasmacytoid dendritic cell relationship: develops_from CL:0000894 ! DN1 thymic pro-T cell [Term] id: CL:0000943 name: Be1 Cell namespace: cell def: "A Be cell that facilitates development of T-helper 1 (Th1) phenotype in CD4-positive T cells, and secretes high levels of interleukin-2, tumor necrosis factor-alpha and interferon-gamma." [GOC:msz, GOC:tfm, GO_REF:0000031, PMID:11101868] synonym: "B effector cell type 1" RELATED [] is_a: CL:0000968 ! Be cell [Term] id: CL:0000944 name: Be2 cell namespace: cell def: "A Be cell that facilitates development of T-helper 2 (Th2) phenotype T cells, and secretes high levels of interleukin-2, interleukin-10, interleukin-4, and interleukin-6." [GOC:msz, GOC:tfm, GO_REF:0000031, PMID:11101868] synonym: "B effector cell type 2" RELATED [] is_a: CL:0000968 ! Be cell [Term] id: CL:0000945 name: lymphocyte of B lineage namespace: cell def: "A lymphocyte of B lineage is a lymphocyte that expresses CD19 on the cell surface. An additional defining characteristic is the commitment to express an immunoglobulin complex." [GOC:add, GOC:rhs, GOC:tfm, GO_REF:0000031, ISBN:0781735149] comment: Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells). is_a: CL:0000542 ! lymphocyte relationship: develops_from CL:0000826 ! pro-B cell [Term] id: CL:0000946 name: antibody secreting cell namespace: cell def: "A lymphocyte of B lineage that is devoted to secreting large amounts of immunoglobulin." [GOC:add, GOC:tfm, GO_REF:0000031, ISBN:0721601464, ISBN:0781735149] is_a: CL:0000945 ! lymphocyte of B lineage [Term] id: CL:0000947 name: IgE plasma cell namespace: cell def: "A long lived plasma cell that secretes IgE." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000974 ! long lived plasma cell [Term] id: CL:0000948 name: IgE memory B cell namespace: cell def: "A class switched memory B cell that expresses IgE on the cell surface." [GOC:rhs, GO_REF:0000031, ISBN:0781765196] is_a: CL:0000972 ! class switched memory B cell [Term] id: CL:0000949 name: IgD plasmablast namespace: cell def: "A plasmablast that secretes IgD, and which occur in a small proportion of B cells in the adult." [GOC:msz, GO_REF:0000031] is_a: CL:0000980 ! plasmablast [Term] id: CL:0000950 name: IgE plasmablast namespace: cell def: "A plasmablast that secretes IgE." [GOC:msz, GO_REF:0000031] is_a: CL:0000980 ! plasmablast [Term] id: CL:0000951 name: IgE short lived plasma cell namespace: cell def: "A short lived plasma cell that secretes IgE." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000975 ! short lived plasma cell [Term] id: CL:0000952 name: preBCR-positive large pre-B-II cell namespace: cell def: "An preBRC-positive large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-positive, composed of surrogate light chain protein (SL), which is composed of VpreB , Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu) on the cell surface." [GOC:rhs, GOC:tfm, GO_REF:0000031, PMID:9785673] is_a: CL:0000957 ! large pre-B-II cell [Term] id: CL:0000953 name: preBCR-negative large pre-B-II cell namespace: cell def: "A pre-BCR-negative large pre-B-II cell is a large pre-B-II cell that is pre-B cell receptor-negative, composed of surrogate light chain protein (SL), which is composed of VpreB and Lambda 5/14.1, in complex with immunoglobulin mu heavy chain (IgHmu), on the cell surface, and lack a DNA rearrangement of immunoglobulin light chain genes." [GOC:rhs, GOC:tfm, GO_REF:0000031, PMID:9785673] is_a: CL:0000957 ! large pre-B-II cell [Term] id: CL:0000954 name: small pre-B-II cell namespace: cell def: "A small pre-B-II cell is a pre-B-II cell that is Rag1-positive, Rag2-positive, pre-BCR-negative, and BCR-negative, is not proliferating, and carries a DNA rearrangement of one or more immunoglobulin light chain genes." [GOC:rhs, GOC:tfm, GO_REF:0000031, PMID:9785673] is_a: CL:0000955 ! pre-B-II cell [Term] id: CL:0000955 name: pre-B-II cell namespace: cell def: "A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain." [GOC:rhs, GOC:tfm, GO_REF:0000031, PMID:9785673] synonym: "pre-B-lymphocyte" EXACT [] xref: BTO:0001133 is_a: CL:0000817 ! precursor B cell relationship: develops_from CL:0000826 ! pro-B cell [Term] id: CL:0000956 name: pre-B-I cell namespace: cell def: "A pre-B-I cell is a precursor B cell that expresses CD34 and surrogate immunoglobulin light chain (VpreB , Lambda 5 (mouse)/14.1 (human)) on the cell surface, and TdT, Rag1,and Rag2 intracellularly. Cell type carries a D-JH DNA rearrangement, and lacks expression of immunglobulin heavy chain protein." [GOC:rhs, GOC:tfm, GO_REF:0000031, PMID:9785673] synonym: "pro-B cell (Philadelphia nomenclature)" RELATED [PMID:11244048] is_a: CL:0000817 ! precursor B cell relationship: develops_from CL:0000826 ! pro-B cell [Term] id: CL:0000957 name: large pre-B-II cell namespace: cell def: "A large pre-B-II cell is a pre-B-II cell that is proliferating and is Rag1-negative and Rag2-negative." [GOC:rhs, GO_REF:0000031, PMID:9785673] synonym: "large pre-B cell" BROAD [PMID:11244048] is_a: CL:0000955 ! pre-B-II cell [Term] id: CL:0000958 name: T1 B cell namespace: cell def: "A transitional stage B cell that migrates from the bone marrow into the peripheral circulation, and finally to the spleen. This cell type has the phenotype surface IgM-positive, surface IgD-negative, CD21-negative, CD23-negative, and CD62L-negative, and CD93-positive. This cell type has also been described as IgM-high, CD19-positive, B220-positive, AA4-positive, and CD23-negative." [GOC:msz, GOC:tfm, GO_REF:0000031, PMCID:PMC2193793, PMID:12810111, http://www.immgen.org/index_content.html] synonym: "transitional stage 1 B cell" EXACT [] is_a: CL:0000818 ! transitional stage B cell [Term] id: CL:0000959 name: T2 B cell namespace: cell def: "A transitional stage B cell that has the phenotype surface IgM-positive, surface IgD-postive, CD21-positive, CD23-positive, CD62L-negative, CD93-positive and is located in the splenic B follicles. This cell type has also been described as IgM-high, CD19-positive, B220-positive, AA4-positive, and CD23-positive." [GOC:msz, GOC:tfm, GO_REF:0000031, PMCID:PMC2193793, PMID:12810111, http://www.immgen.org/index_content.html] synonym: "transitional stage 2 B cell" EXACT [] is_a: CL:0000818 ! transitional stage B cell relationship: develops_from CL:0000958 ! T1 B cell [Term] id: CL:0000960 name: T3 B cell namespace: cell def: "A transitional stage B cell that expresses surface IgM and IgD, and CD62L. This cell type appears to be an anergic B cell that does not proliferate upon BCR signaling, is found in the spleen and lymph nodes, and has the phenotype surface IgM-positive, surface IgD-positive, CD21-positive, CD23-positive, CD62L-positive, and CD93-positive. This cell type has also been described as IgM-low, CD19-positive, B220-positive, AA4-positive, and CD23-positive (i.e. this cell-type is distinguished from T2 cells by surface expression of IgM)." [GOC:msz, GOC:tfm, GO_REF:0000031, PMID:12810111, PMID:17174121, http://www.immgen.org/index_content.html] synonym: "An1 B cell" EXACT [PMID:17174121] synonym: "transitional stage 3 B cell" EXACT [] is_a: CL:0000818 ! transitional stage B cell relationship: develops_from CL:0000959 ! T2 B cell [Term] id: CL:0000961 name: Bm1 B cell namespace: cell def: "A follicular B cell that expresses IgD, but not CD23 or CD38. This naive cell type is activated in the extrafollicular areas through interaction with interdigitating dendritic cells and antigen-specific CD4-positive T cells." [GOC:msz, GO_REF:0000031, PMID:17992590, PMID:8006591] is_a: CL:0000843 ! follicular B cell relationship: develops_from CL:0000818 ! transitional stage B cell [Term] id: CL:0000962 name: Bm2 B cell namespace: cell def: "A follicular B cell that is IgD-positive and CD23-positive and CD38-positive. This naive cell type is activated in the extrafollicular areas via interaction with dendritic cells and antigen specific T cells." [GOC:msz, GO_REF:0000031, PMID:17992590, PMID:8006591] is_a: CL:0000843 ! follicular B cell relationship: develops_from CL:0000961 ! Bm1 B cell [Term] id: CL:0000963 name: Bm3-delta B cell namespace: cell def: "A germinal center B cell that develops from a Bm3 B cell. This cell has the phenotype IgM-negative, IgD-positive, and CD38-positive." [GOC:add, GOC:msz, GOC:tfm, GO_REF:0000031, PMID:9280752] is_a: CL:0000844 ! germinal center B cell relationship: develops_from CL:0000965 ! Bm3 B cell [Term] id: CL:0000964 name: Bm2' B cell namespace: cell def: "A germinal center B cell that founds a germinal center, and has the phenotype IgD-positive, CD38-positive, and CD23-negative." [GOC:msz, GOC:tfm, GO_REF:0000031, PMID:17992590, PMID:8006591] synonym: "Bm2-prime B cell" EXACT [] synonym: "germinal center founder cell" RELATED [] is_a: CL:0000844 ! germinal center B cell relationship: develops_from CL:0000962 ! Bm2 B cell [Term] id: CL:0000965 name: Bm3 B cell namespace: cell def: "A germinal center B cell that is rapidly dividing and has the phenotype IgD-negative, CD38-positive, and CD77-positive. Somatic hypermutation of the immunoglobulin V gene region can occur during proliferation of this cell type." [GOC:msz, GO_REF:0000031, PMID:8006591] synonym: "centroblast" RELATED [PMID:8006591] is_a: CL:0000844 ! germinal center B cell relationship: develops_from CL:0000964 ! Bm2' B cell [Term] id: CL:0000966 name: Bm4 B cell namespace: cell def: "A germinal center B cell that has the phenotype CD77-negative, IgD-negative, and CD38-positive. These cells have undergone somatic mutation of the B cell receptor." [GOC:msz, GO_REF:0000031, PMID:8006591] synonym: "centrocyte" RELATED [PMID:17992590] is_a: CL:0000844 ! germinal center B cell relationship: develops_from CL:0000963 ! Bm3-delta B cell [Term] id: CL:0000967 name: Bm5 B cell namespace: cell def: "A memory B cell arising in the germinal center that is IgD-negative and has undergone somatic mutation of the variable region of the immunoglobulin heavy and light chain genes." [GOC:msz, GOC:tfm, GO_REF:0000031, PMID:8006591] is_a: CL:0000787 ! memory B cell relationship: develops_from CL:0000966 ! Bm4 B cell [Term] id: CL:0000968 name: Be cell namespace: cell def: "A mature B cell that produces cytokines that can influence CD4 T cell differentiation." [GOC:msz, GOC:tfm, GO_REF:0000031, PMID:11101868] synonym: "B effector cell" EXACT [] synonym: "effector B cell" EXACT [] is_a: CL:0000785 ! mature B cell [Term] id: CL:0000969 name: regulatory B cell namespace: cell def: "A mature B cell that has the phenotype CD1d-positive and expresses interleukin-10. This cell type has been associated with suppression of chronic inflammatory responses and T cell responses." [GOC:msz, GOC:tfm, GO_REF:0000031, PMID:11869683] is_a: CL:0000785 ! mature B cell [Term] id: CL:0000970 name: unswitched memory B cell namespace: cell def: "An unswitched memory B cell is a memory B cell that has the phenotype IgM-positive and/or IgD-positive, CD27-positive, CD138-negative, IgG-negative, IgE-negative, and IgA-negative." [GOC:rhs, GO_REF:0000031, ISBN:0781765196] is_a: CL:0000787 ! memory B cell relationship: develops_from CL:0000980 ! plasmablast [Term] id: CL:0000971 name: IgM memory B cell namespace: cell def: "An IgM memory B cell is an unswitched memory B cell with the phenotype IgM-positive and IgD-negative." [GOC:rhs, GO_REF:0000031, ISBN:0781765196] is_a: CL:0000970 ! unswitched memory B cell [Term] id: CL:0000972 name: class switched memory B cell namespace: cell def: "A class switched memory B cell is a memory B cell that has undergone Ig class switching and therefore is IgM-negative on the cell surface. These cells are usually CD27-positive and have either IgG, IgE, or IgA on the cell surface." [GOC:rhs, GO_REF:0000031, ISBN:0781765196] is_a: CL:0000787 ! memory B cell relationship: develops_from CL:0000970 ! unswitched memory B cell [Term] id: CL:0000973 name: IgA memory B cell namespace: cell def: "A class switched memory B cell that expresses IgA." [GOC:msz, GO_REF:0000031, ISBN:0781765196] is_a: CL:0000972 ! class switched memory B cell [Term] id: CL:0000974 name: long lived plasma cell namespace: cell def: "A fully differentiated plasma cell that lives for years, as opposed to months, secretes immunoglobulin, and has the phenotype weakly CD19-positive, CD20-negative, CD38-negative, strongly CD138-positive, MHC Class II-negative, surface immunoglobulin-negative, IgD-negative, and strongly CXCR4-positive. The majority of these cells of this type reside in the bone marrow." [GOC:msz, GOC:tfm, GO_REF:0000031, ISBN:9780781765190, PMID:16014527] is_a: CL:0000786 ! plasma cell relationship: develops_from CL:0000975 ! short lived plasma cell [Term] id: CL:0000975 name: short lived plasma cell namespace: cell def: "A fully differentiated plasma cell that lives for months." [GOC:msz, GO_REF:0000031, PMID:16014527] is_a: CL:0000786 ! plasma cell relationship: develops_from CL:0000980 ! plasmablast [Term] id: CL:0000976 name: IgA short lived plasma cell namespace: cell def: "A short lived plasma cell that secretes IgA. These cells may be found in the bone marrow as well as in the mucosal immune system." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000975 ! short lived plasma cell [Term] id: CL:0000977 name: IgG short lived plasma cell namespace: cell def: "A short lived plasma cell that secretes IgG." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000975 ! short lived plasma cell [Term] id: CL:0000978 name: IgM short lived plasma cell namespace: cell def: "A short lived plasma cell that secretes IgM." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000975 ! short lived plasma cell [Term] id: CL:0000979 name: IgG memory B cell namespace: cell def: "An IgG memory B cell is a class switched memory B cell that is class switched and expresses IgG on the cell surface." [GOC:rhs, GO_REF:0000031, ISBN:0781765196] is_a: CL:0000972 ! class switched memory B cell [Term] id: CL:0000980 name: plasmablast namespace: cell def: "An activated mature (naive or memory) B cell that is secreting immunoglobulin, typified by being CD27-positive, CD38-positive, CD138-negative." [GOC:msz, GOC:tfm, GO_REF:0000031, PMCID:PMC2673126] xref: FMA:84371 is_a: CL:0000785 ! mature B cell relationship: develops_from CL:0000785 ! mature B cell [Term] id: CL:0000981 name: double negative memory B cell namespace: cell def: "A memory B cell with the phenotype IgD-negative and CD27-negative." [GOC:msz, GOC:tfm, GO_REF:0000031] is_a: CL:0000787 ! memory B cell [Term] id: CL:0000982 name: IgG plasmablast namespace: cell def: "A plasmablast that secretes IgG." [GOC:msz, GO_REF:0000031] is_a: CL:0000980 ! plasmablast [Term] id: CL:0000983 name: IgM plasmablast namespace: cell def: "A plasmablast that secretes IgM." [GOC:msz, GO_REF:0000031] is_a: CL:0000980 ! plasmablast [Term] id: CL:0000984 name: IgA plasmablast namespace: cell def: "A plasmablast that secretes IgA." [GOC:msz, GO_REF:0000031] is_a: CL:0000980 ! plasmablast [Term] id: CL:0000985 name: IgG plasma cell namespace: cell def: "A fully differentiated plasma cell that secretes IgG." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000974 ! long lived plasma cell [Term] id: CL:0000986 name: IgM plasma cell namespace: cell def: "A fully differentiated plasma cell that secretes IgM." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000974 ! long lived plasma cell [Term] id: CL:0000987 name: IgA plasma cell namespace: cell def: "A fully differentiated plasma cell that secretes IgA." [GOC:msz, GO_REF:0000031, ISBN:781735149] is_a: CL:0000974 ! long lived plasma cell [Term] id: CL:0000988 name: hematopoietic cell namespace: cell def: "A cell of a hematopoietic lineage." [GOC:add, GO_REF:0000031] synonym: "haematopoietic cell" EXACT [] synonym: "haemopoietic cell" EXACT [] synonym: "hemopoietic cell" EXACT [] xref: BTO:0000574 xref: FMA:70366 xref: FMA:83598 is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000989 name: CD11c-low plasmacytoid dendritic cell namespace: cell def: "CD11c-low plasmacytoid dendritic cell is a leukocyte that is CD11c-low, CD45R-positive, GR1-positive and CD11b-negative." [GOC:amm, GOC:dsd, GO_REF:0000031, PMID:15771572, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000001 )(PMID: 19243617). These cells are CD281-positive (TLR1), CD282-positive (TLR2), CD285-positive (TLR5), CD286-positive (TLR6), and CD288-positive (TLR8). is_a: CL:0000784 ! plasmacytoid dendritic cell is_a: CL:0000120 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! granule cell relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain [Term] id: CL:0000990 name: conventional dendritic cell namespace: cell def: "Conventional dendritic cell is a dendritic cell that is CD11c-high." [GOC:amm, GO_REF:0000031, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL: 0000003)(PMID: 19243617) These cells are also CD20-negative, MHCII-positive. synonym: "DC1" EXACT [] synonym: "cDC" EXACT [] synonym: "dendritic reticular cell" EXACT [] synonym: "interdigitating cell" BROAD [] synonym: "type 1 DC" EXACT [] synonym: "veiled cell" BROAD [] xref: FMA:84191 is_a: CL:0000451 ! dendritic cell [Term] id: CL:0000991 name: CD11c-negative plasmacytoid dendritic cell namespace: cell def: "CD11c-negative plasmacytoid dendritic cell is a leukocyte is CD11c-negative, CD45RA-positive, CD85g-positive(ILT7), CD123-positive, CD303-positive." [GOC:amm, GO_REF:0000031, PMID:15771572, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000004 )(PMID: 19243617). These cells are CD281-positive (TLR1), CD286-positive (TLR6), and CD290-positive (TLR10). synonym: "CD303-positive dendritic cell" EXACT [] is_a: CL:0000784 ! plasmacytoid dendritic cell [Term] id: CL:0000992 name: immature CD11c-low plasmacytoid dendritic cell namespace: cell def: "Immature CD11c-low plasmacytoid dendritic cell is a CD11c-low plasmacytoid dendritic cell that is CD80-low and CD86-low." [GOC:amm, GO_REF:0000031, PMID:15771572, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL: 0000006)(PMID: 19243617). is_a: CL:0000989 ! CD11c-low plasmacytoid dendritic cell relationship: develops_from CL:0001029 ! common dendritic progenitor [Term] id: CL:0000993 name: mature CD11c-low plasmacytoid dendritic cell namespace: cell def: "Mature CD11c-low plasmacytoid dendritic cell is a CD11c-low plasmacytoid dendritic cell that is CD83-high and is CD80-positive, CD86-positive, and MHCII-positive." [GOC:amm, GO_REF:0000031, PMID:15771572, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000007 )(PMID: 19243617). is_a: CL:0000989 ! CD11c-low plasmacytoid dendritic cell relationship: develops_from CL:0000992 ! immature CD11c-low plasmacytoid dendritic cell [Term] id: CL:0000994 name: immature CD11c-negative plasmacytoid dendritic cell namespace: cell def: "Immature CD11c-negative plasmacytoid dendritic cell is a CD11c-negative plasmacytoid dendritic cell is CD80-negative, CD86-low and MHCII-low." [GOC:amm, GO_REF:0000031, PMID:15771572, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000008 )(PMID: 19243617). is_a: CL:0000991 ! CD11c-negative plasmacytoid dendritic cell relationship: develops_from CL:0000995 ! CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor [Term] id: CL:0000995 name: CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor namespace: cell comment: Originally described in the dendritic cell ontology (DC_CL:1100000 )(PMID: 19243617). synonym: "CD71-positive common myeloid precursor OR CD7-negative lymphoid precursor OR CD7-positive lymphoid" BROAD [] is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell union_of: CL:0001021 ! CD34-positive, CD38-positive common lymphoid progenitor union_of: CL:0001026 ! CD34-positive, CD38-positive common myeloid progenitor [Term] id: CL:0000996 name: mature CD11c-negative plasmacytoid dendritic cell namespace: cell def: "Mature CD11c-negative plasmacytoid dendritic cell is a CD11c-negative plasmacytoid dendritic cell is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GO_REF:0000031, PMID:15771572, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000009 )(PMID: 19243617). is_a: CL:0000991 ! CD11c-negative plasmacytoid dendritic cell relationship: develops_from CL:0000994 ! immature CD11c-negative plasmacytoid dendritic cell [Term] id: CL:0000997 name: immature CD8_alpha-negative CD11b-positive dendritic cell namespace: cell def: "Immature CD8_alpha-negative CD11b-positive dendritic cell is a CD8_alpha-negative CD11b-positive dendritic cell that is CD80-low, CD86-low, and MHCII-low." [GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585] comment: Originally described in the dendritic cell ontology (DC_CL:0000010 )(PMID: 19243617). is_a: CL:0000999 ! CD4-positive CD11b-positive dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0000998 name: CD8_alpha-negative CD11b-negative dendritic cell namespace: cell def: "CD8_alpha-negative CD11b-negative dendritic cell is a conventional dendritic cell that is CD11b-negative, CD4-negative CD8_alpha-negative and is CD205-positive. This cell is able to cross- present antigen to CD8-alpha-positive T cells." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585, http:www.immgen.org/index_content.html] comment: These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL: 0000011)(PMID: 19243617). synonym: "DC.8-4-11b-" EXACT [] synonym: "triple negative dendritic cell" EXACT [] is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0000999 name: CD4-positive CD11b-positive dendritic cell namespace: cell def: "CD8_alpha-negative CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-positive and is CD205-negative and CD8_alpha-negative." [GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585] comment: Defined as having a disposition to secreting anti-inflammatory cytokines.nThese markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL: 0000012)(PMID: 19243617). synonym: "DC.4+" EXACT [] is_a: CL:0002465 ! CD11b-positive dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0001000 name: CD8_alpha-positive CD11b-negative dendritic cell namespace: cell def: "CD8_alpha-positive CD11b-negative dendritic cell is a conventional dendritic cell that is CD11b-negative, CD4-negative and is CD205-positive and CD8_alpha-positive." [GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585] comment: Cells are defined as having a disposition to secreting inflammatory cytokines. Originally described in the dendritic cell ontology (DC_CL:0000013)(PMID: 19243617). synonym: "DC.8+" EXACT [] is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0001001 name: immature CD8_alpha-negative CD11b-negative dendritic cell namespace: cell def: "Immature CD8_alpha-negative CD11b-negative dendritic cell is a CD8_alpha-negative CD11b-negative dendritic cell that is CD80-low, CD86-low, and MHCII-low." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585] comment: These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:DC_CL:0000014)(PMID: 19243617). is_a: CL:0000998 ! CD8_alpha-negative CD11b-negative dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0001002 name: mature CD8_alpha-negative CD11b-negative dendritic cell namespace: cell def: "Mature CD8_alpha-negative CD11b-negative dendritic cell is a CD8_alpha-negative CD11b-negative dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585] comment: These markers are associated with mouse cells. Defined as having a disposition to secretion of anti-inflammatory cytokines. Originally described in the dendritic cell ontology (DC_CL:0000015)(PMID: 19243617). is_a: CL:0000998 ! CD8_alpha-negative CD11b-negative dendritic cell relationship: develops_from CL:0001001 ! immature CD8_alpha-negative CD11b-negative dendritic cell [Term] id: CL:0001003 name: mature CD8_alpha-negative CD11b-positive dendritic cell namespace: cell def: "Mature CD8_alpha-negative CD11b-positive dendritic cell is a CD8_alpha-negative CD11b-positive dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585] comment: Originally described in the dendritic cell ontology (DC_CL:0000016)(PMID: 19243617). is_a: CL:0000999 ! CD4-positive CD11b-positive dendritic cell relationship: develops_from CL:0000997 ! immature CD8_alpha-negative CD11b-positive dendritic cell [Term] id: CL:0001004 name: immature CD8_alpha-positive CD11b-negative dendritic cell namespace: cell def: "Immature CD8_alpha-positive CD11b-negative dendritic cell is a CD8_alpha-positive CD11b-negative dendritic cell that is CD80-low, CD86-low, and MHCII-low." [GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585] comment: Originally described in the dendritic cell ontology (DC_CL:0000017)(PMID: 19243617). is_a: CL:0001000 ! CD8_alpha-positive CD11b-negative dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0001005 name: mature CD8_alpha-positive CD11b-negative dendritic cell namespace: cell def: "Mature CD8_alpha-positive CD11b-negative dendritic cell is a CD8_alpha-positive CD11b-negative dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585] comment: Originally described in the dendritic cell ontology (DC_CL:0000018)(PMID: 19243617). is_a: CL:0001000 ! CD8_alpha-positive CD11b-negative dendritic cell relationship: develops_from CL:0001004 ! immature CD8_alpha-positive CD11b-negative dendritic cell [Term] id: CL:0001006 name: dermal dendritic cell namespace: cell def: "Dermal dendritic cell is a conventional dendritic cell that is CD11b-positive, CD205-positive and CD8 alpha-negative." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585] comment: Originally described in the dendritic cell ontology (DC_CL:0000019)(PMID: 19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD285-positive (TLR5), CD288-positive (TLR8), and CD289-positive (TLR9). xref: BTO:0004812 is_a: CL:0000990 ! conventional dendritic cell [Term] id: CL:0001007 name: interstitial dendritic cell namespace: cell def: "Interstitial dendritic cell is a conventional dendritic cell that is CD11b-positive, CD1a-positive, CD206-positive, CD209-positive, and CD36-positive." [GOC:amm, GO_REF:0000031, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000020)(PMID: 19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD286-positive (TLR6), CD288-positive (TLR8), and CD290-positive (TLR10). is_a: CL:0000990 ! conventional dendritic cell [Term] id: CL:0001008 name: Kit and Sca1-positive hematopoietic stem cell namespace: cell def: "A hematopoietic stem cell that has plasma membrane part Kit-positive, SCA-1-positive, CD150-positive and CD34-negative." [GOC:add, GOC:amm, GOC:tfm, GO_REF:0000031, PMID:17952047, PMID:19022770] comment: Cell markers are associated with mouse hematopoietic stem cell. Originally described in the dendritic cell ontology (DC_CL:0000043)(PMID: 19243617). synonym: "LSK stem cell" EXACT [] synonym: "Sca1-positive hematopoietic stem cell" EXACT [] is_a: CL:0000037 ! hematopoietic stem cell [Term] id: CL:0001009 name: immature dermal dendritic cell namespace: cell def: "Immature dermal dendritic cell is a dermal dendritic cell that is CD80-low, CD86-low, and MHCII-low." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585] comment: Originally described in the dendritic cell ontology (DC_CL:0000022)(PMID: 19243617). is_a: CL:0001006 ! dermal dendritic cell relationship: develops_from CL:0001029 ! common dendritic progenitor [Term] id: CL:0001010 name: mature dermal dendritic cell namespace: cell def: "Mature dermal dendritic cell is a dermal dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585] comment: Originally described in the dendritic cell ontology (DC_CL:0000023)(PMID: 19243617). is_a: CL:0001006 ! dermal dendritic cell relationship: develops_from CL:0001009 ! immature dermal dendritic cell [Term] id: CL:0001011 name: immature interstitial dendritic cell namespace: cell def: "Immature interstitial dendritic cell is a interstitial dendritic cell that is CD80-low, CD86-low, and MHCII-low." [GOC:amm, GOC:tfm, GO_REF:0000031, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000024)(PMID: 19243617). is_a: CL:0001007 ! interstitial dendritic cell relationship: develops_from CL:0001012 ! CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor [Term] id: CL:0001012 name: CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor namespace: cell comment: Originally described in the dendritic cell ontology (DC_CL:1110000)(PMID: 19243617). is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell union_of: CL:0000557 ! granulocyte monocyte progenitor cell union_of: CL:0001027 ! CD7-negative lymphoid progenitor cell [Term] id: CL:0001013 name: mature interstitial dendritic cell namespace: cell def: "Mature interstitial dendritic cell is a interstitial dendritic cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GOC:tfm, GO_REF:0000031, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000025)(PMID: 19243617). is_a: CL:0001007 ! interstitial dendritic cell relationship: develops_from CL:0001011 ! immature interstitial dendritic cell [Term] id: CL:0001014 name: CD1a-positive Langerhans cell namespace: cell def: "CD1a-positive Langerhans cell is a Langerhans_cell that is CD1a-positive and CD324-positive." [GOC:amm, GO_REF:0000031, PMID:17850486] comment: These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000026)(PMID: 19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD284-positive (TLR4), CD286-positive (TLR6), CD287-positive (TLR7), and CD290-positive (TLR10). When activated, these cells are capable of producing IL-6, IL-8, and IL-15. synonym: "CD1a-LC" EXACT [] is_a: CL:0000453 ! Langerhans cell [Term] id: CL:0001015 name: CD8_alpha-low Langerhans cell namespace: cell def: "CD8_alpha-low Langerhans cell is a Langerhans cell that is CD205-high and is CD8_alpha-low." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585] comment: These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000027)(PMID: 19243617). They are also CD205-high, CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD285-positive (TLR5), CD286-positive (TLR6), and CD289-positive (TLR9). is_a: CL:0000453 ! Langerhans cell [Term] id: CL:0001016 name: immature CD1a-positive Langerhans cell namespace: cell def: "Immature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-low, CD86-low, and MHCII-low." [GOC:amm, GOC:tfm, GO_REF:0000031, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000028)(PMID: 19243617). is_a: CL:0001014 ! CD1a-positive Langerhans cell [Term] id: CL:0001017 name: mature CD1a-positive Langerhans cell namespace: cell def: "Mature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GOC:tfm, GO_REF:0000031, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000029)(PMID: 19243617). When activated, these cells produce IL-6, IL-8, and IL-15. is_a: CL:0001014 ! CD1a-positive Langerhans cell relationship: develops_from CL:0001016 ! immature CD1a-positive Langerhans cell [Term] id: CL:0001018 name: immature CD8_alpha-low Langerhans cell namespace: cell def: "Immature CD8_alpha-low Langerhans cell is a CD8_alpha-low Langerhans cell that is CD80-low, CD86-low, and MHCII-low." [GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585] comment: These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000030)(PMID: 19243617). is_a: CL:0001015 ! CD8_alpha-low Langerhans cell relationship: develops_from CL:0001019 ! CD115-positive monocyte OR common dendritic progenitor [Term] id: CL:0001019 name: CD115-positive monocyte OR common dendritic progenitor namespace: cell comment: Originally described in the dendritic cell ontology (DC_CL:1111000)(PMID: 19243617). is_a: CL:0002031 ! hematopoietic lineage restricted progenitor cell union_of: CL:0001022 ! CD115-positive monocyte union_of: CL:0001029 ! common dendritic progenitor [Term] id: CL:0001020 name: mature CD8_alpha-low Langerhans cell namespace: cell def: "Mature CD8_alpha-low Langerhans cell is a CD8_alpha-low Langerhans cell that that is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:amm, GO_REF:0000031, PMCID:PMC2346585] comment: These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000031)(PMID: 19243617). is_a: CL:0001015 ! CD8_alpha-low Langerhans cell relationship: develops_from CL:0001018 ! immature CD8_alpha-low Langerhans cell [Term] id: CL:0001021 name: CD34-positive, CD38-positive common lymphoid progenitor namespace: cell def: "A common lymphoid progenitor that is CD10-positive, CD45RA-positive, CD34-positive and CD38-positive." [GOC:add, GOC:amm, GOC:tfm, GO_REF:0000031, PMCID:PMC2346585, PMID:19022770] comment: These markers are associated with human common lymphoid progenitors. Originally described in the dendritic cell ontology (DC_CL:0000032)(PMID: 19243617). synonym: "CD10-positive common lymphocyte precursor" EXACT [] synonym: "CD10-positive common lymphocyte progenitor" EXACT [] synonym: "CD10-positive common lymphoid precursor" EXACT [] is_a: CL:0000051 ! common lymphoid progenitor relationship: develops_from CL:0002043 ! CD34-positive, CD38-negative multipotent progenitor cell [Term] id: CL:0001022 name: CD115-positive monocyte namespace: cell def: "CD115-positive monocyte is a monocyte that is CD115-positive and CD11b-positive." [GOC:add, GOC:amm, GO_REF:0000031, PMID:17952047] comment: These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000033)(PMID: 19243617). is_a: CL:0000576 ! monocyte relationship: develops_from CL:0002001 ! CD34-positive, CD38-positive granulocyte monocyte progenitor [Term] id: CL:0001023 name: Kit-positive, CD34-positive common myeloid progenitor namespace: cell def: "A common myeloid progenitor that is Kit-positive and CD34-positive, Il7ra-negative, and is SCA1-low and Fcgr2-low and Fcgr3-low." [GOC:add, GOC:amm, GOC:tfm, GO_REF:0000031, PMID:1261582, PMID:17952047, http://www.immgen.org/index_content.html] comment: Markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000034)(PMID: 19243617). synonym: "CD117-positive common myeloid precursor" BROAD [] is_a: CL:0000049 ! common myeloid progenitor relationship: develops_from CL:0002035 ! Slamf1-negative multipotent progenitor cell [Term] id: CL:0001024 name: CD34-positive, CD38-negative hematopoietic stem cell namespace: cell def: "CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive." [GOC:add, GOC:amm, GOC:tfm, GO_REF:0000031, PMID:10430905, PMID:11750107, PMID:16551251, PMID:20024907, PMID:9389721] comment: Cell markers are associated with human hematopoietic stem cells. Originally described in the dendritic cell ontology (DC_CL:0000035)(PMID: 19243617). synonym: "CD133-positive hematopoietic stem cell" EXACT [PMID:16140871] xref: FMA:86475 is_a: CL:0000037 ! hematopoietic stem cell [Term] id: CL:0001025 name: Kit-positive, Sca1-positive common lymphoid progenitor namespace: cell def: "A common lymphoid progenitor that is Kit-low, FLT3-positive, IL7ralpha-positive, and SCA1-low." [GOC:add, GOC:amm, GOC:tfm, GO_REF:0000031, PMID:17952047, http://www.immgen.org/index_content.html] comment: Markers are associated with mouse cells. synonym: "CD217-positive common lymphocyte precursor" EXACT [] synonym: "CD217-positive common lymphocyte progenitor" EXACT [] synonym: "CD217-positive common lymphoid precursor" EXACT [] is_a: CL:0000051 ! common lymphoid progenitor relationship: develops_from CL:0000936 ! early lymphoid progenitor [Term] id: CL:0001026 name: CD34-positive, CD38-positive common myeloid progenitor namespace: cell def: "A common myeloid progenitor that is CD34-positive, CD38-positive, IL3ra-low, CD10-negative, CD7-negative, CD45RA-negative, and IL-5Ralpha-negative." [GOC:add, GOC:amm, GO_REF:0000031, PMCID:PMC2626675, PMID:16551251] comment: Markers are associated with human cell type. Originally described in the dendritic cell ontology (DC_CL:0000038)(PMID: 19243617). synonym: "CD71-positive common myeloid precursor" NARROW [] is_a: CL:0000049 ! common myeloid progenitor relationship: develops_from CL:0002043 ! CD34-positive, CD38-negative multipotent progenitor cell [Term] id: CL:0001027 name: CD7-negative lymphoid progenitor cell namespace: cell def: "CD7-negative lymphoid progenitor cell is a lymphoid progenitor cell that is CD34-positive, CD7-negative and CD45RA-negative." [GOC:amm, GO_REF:0000031, PMID:16551251] comment: These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000039)(PMID: 19243617). synonym: "CD7-negative lymphoid precursor" EXACT [] is_a: CL:0000051 ! common lymphoid progenitor relationship: develops_from CL:0001021 ! CD34-positive, CD38-positive common lymphoid progenitor [Term] id: CL:0001028 name: CD7-positive lymphoid progenitor cell namespace: cell def: "CD7-positive lymphoid progenitor cell is a lymphoid progenitor cell that is CD34-positive, CD7-positive and is CD45RA-negative." [GOC:amm, GOC:tfm, GO_REF:0000031, PMID:16551251, PMID:19491395] comment: These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000040)(PMID: 19243617). synonym: "CD7-positive lymphoid precursor" EXACT [] is_a: CL:0000051 ! common lymphoid progenitor relationship: develops_from CL:0001027 ! CD7-negative lymphoid progenitor cell [Term] id: CL:0001029 name: common dendritic progenitor namespace: cell def: "Common dendritic precursor is a hematopoietic progenitor cell that is CD117-low, CD135-positive, CD115-positive and lacks plasma membrane parts for hematopoietic lineage markers." [GOC:amm, GOC:tfm, GO_REF:0000031, PMID:16551251, PMID:17922016, PMID:19286519] comment: Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID: 19243617). synonym: "CDP" EXACT [PMID:21219184] synonym: "common dendritic precursor" EXACT [] synonym: "pro-DCs" EXACT [PMID:21219184] is_a: CL:0002031 ! hematopoietic lineage restricted progenitor cell relationship: develops_from CL:0002009 ! macrophage dendritic cell progenitor [Term] id: CL:0001030 name: CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor namespace: cell comment: Originally described in the dendritic cell ontology (DC_CL:1111100)(PMID: 19243617). is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell union_of: CL:0001023 ! Kit-positive, CD34-positive common myeloid progenitor union_of: CL:0001025 ! Kit-positive, Sca1-positive common lymphoid progenitor [Term] id: CL:0001031 name: cerebellar granule cell namespace: cell def: "Granule cell that is part of the cerebellum." [GOC:mah] xref: BTO:0004278 is_a: CL:0000120 ! granule cell [Term] id: CL:0001032 name: cortical granule cell namespace: cell def: "Granule cell that is part of the cerebral cortex." [GOC:mah] is_a: CL:0000120 ! granule cell [Term] id: CL:0001033 name: hippocampal granule cell namespace: cell def: "Granule cell that is part of the hippocampus." [GOC:mah] is_a: CL:0000120 ! granule cell [Term] id: CL:0001034 name: cell in vitro namespace: cell def: "A cell that has been removed from a natural environment, and placed in a controlled artificial environment for use in some investigation. Includes multicellular organism cells removed from an organism, and unicellular organisms removed from a natural environment." [ReO:mhb] comment: 'In vitro', translating literally to 'in glass', typically refers to a controlled, often sterile, laboratory setting where cells or other specimens are placed by some agent for the purpose of studying or manipulating them as part of some research investigation. This term is intended to contrast with 'native', which refers to cells or other biological entities that are found in a natural setting. is_a: CL:0000000 ! cell [Term] id: CL:0001658 name: visual pigment cell (sensu Nematoda and Protostomia) namespace: cell xref: FBbt:00004230 is_a: CL:0000149 ! visual pigment cell is_a: CL:0000341 ! pigment cell (sensu Nematoda and Protostomia) [Term] id: CL:0002000 name: Kit-positive erythroid progenitor cell namespace: cell def: "An erythroid progenitor cell is Kit-positive, Ly6A-negative, CD41-negative, CD127-negative, and CD123-negative. This cell type is also described as being lin-negative, Kit-positive, CD150-negative, CD41-negative, CD105-positive, and FcgR-negative." [GOC:ak, GOC:tfm, PMID:19805084, http://www.immgen.org/index_content.html] comment: Markers found on mouse cells. is_a: CL:0000038 ! erythroid progenitor cell relationship: develops_from CL:0002006 ! Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell [Term] id: CL:0002001 name: CD34-positive, CD38-positive granulocyte monocyte progenitor namespace: cell def: "A granulocyte monocyte progenitor is CD34-positive, CD38-positive, IL-3receptor-alpha-positive and is CD45RA-negative." [GOC:tfm, PMID:12615892, PMID:19022770] comment: Markers are for human cells. According to different research groups, CD45RA is present or absent on this cell population. is_a: CL:0000557 ! granulocyte monocyte progenitor cell relationship: develops_from CL:0001026 ! CD34-positive, CD38-positive common myeloid progenitor [Term] id: CL:0002002 name: Kit-positive granulocyte monocyte progenitor namespace: cell def: "A granulocyte monocyte progenitor that is Kit-positive, CD34-positive, Fc-gamma receptor II/II-positive, and is Sca-1-negative, Il7ra-negative, Cxc3r1-negative, and CD90-negative." [GOC:tfm, PMID:12615892, PMID:16322423, PMID:19022770, PMID:19273628, http://www.immgen.org/index_content.html] comment: Markers are found on mouse cells. is_a: CL:0000557 ! granulocyte monocyte progenitor cell relationship: develops_from CL:0001023 ! Kit-positive, CD34-positive common myeloid progenitor [Term] id: CL:0002003 name: CD34-positive, GlyA-negative erythroid progenitor cell namespace: cell def: "An erythroid progenitor cell that is CD34-positive and is GlyA-negative." [GOC:ak, GOC:tfm, PMID:19621348] comment: Cell markers associated with human cells. xref: FMA:83517 is_a: CL:0000038 ! erythroid progenitor cell relationship: develops_from CL:0002005 ! CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell [Term] id: CL:0002004 name: CD34-negative, GlyA-negative proerythroblast namespace: cell def: "A proerythoblast that is CD34-negative and GlyA-negative." [GOC:ak, GOC:tfm, PMID:19621348] comment: Cell surface markers are associated with human cells. is_a: CL:0000547 ! proerythroblast relationship: develops_from CL:0002003 ! CD34-positive, GlyA-negative erythroid progenitor cell [Term] id: CL:0002005 name: CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell namespace: cell def: "A megakaryocyte erythroid progenitor cell is CD34-positive, CD38-positive and is IL3-receptor alpha-negative and CD45RA-negative." [GOC:tfm, PMID:12615892, PMID:190227700] comment: Markers are associated with human cell type. is_a: CL:0000050 ! megakaryocyte-erythroid progenitor cell [Term] id: CL:0002006 name: Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell namespace: cell def: "A megakaryocyte erythroid progenitor cell that is Kit-positive and is Sca1-negative, CD34-negative, CD90-negative, IL7r-alpha-negative and Fcgr II/III-low." [GOC:tfm, PMID:12615892, PMID:19022770, http://www.immgen.org/index_content.html] comment: Markers are associated with mouse cells. is_a: CL:0000050 ! megakaryocyte-erythroid progenitor cell [Term] id: CL:0002007 name: Kit-low, CD34-positive eosinophil progenitor cell namespace: cell def: "A lineage marker-negative, CD34-positive, IL5r-alpha-positive, and Sca1-negative eosinophil progenitor cell." [GOC:tfm, PMID:17582345] comment: Markers are found on mouse cells. is_a: CL:0000611 ! eosinophil progenitor cell relationship: develops_from CL:0002002 ! Kit-positive granulocyte monocyte progenitor [Term] id: CL:0002008 name: CD34-positive, CD38-positive eosinophil progenitor cell namespace: cell def: "A lineage marker-negative, CD34-positive, CD38-positive, IL3r-alpha-positive, IL5r-alpha-positive, and CD45RA-negative eosinophil progenitor cell." [GOC:tfm, PMCID:PMC2626675] comment: Markers are associated with human cells. is_a: CL:0000611 ! eosinophil progenitor cell relationship: develops_from CL:0002001 ! CD34-positive, CD38-positive granulocyte monocyte progenitor [Term] id: CL:0002009 name: macrophage dendritic cell progenitor namespace: cell def: "A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages." [GOC:tfm, PMID:19273628] synonym: "MDP" EXACT [] is_a: CL:0002032 ! hematopoietic oligopotent progenitor cell relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell [Term] id: CL:0002010 name: pre-conventional dendritic cell namespace: cell def: "A lin-negative, MHC-II-negative, CD11c-positive, FLT3-positive cell with intermediate expression of SIRP-alpha." [GOC:tfm] is_a: CL:0002031 ! hematopoietic lineage restricted progenitor cell relationship: develops_from CL:0001029 ! common dendritic progenitor [Term] id: CL:0002011 name: Kit-positive macrophage dendritic cell progenitor namespace: cell def: "A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages. Marker for this cell is Kit-high, CD115-positive, CD135-positive, Cx3cr1-positive, and is Il7ra-negative." [GOC:tfm, PMID:19273628] comment: Markers are associated with mouse cells. synonym: "murine MDP" EXACT [] is_a: CL:0002009 ! macrophage dendritic cell progenitor relationship: develops_from CL:0002002 ! Kit-positive granulocyte monocyte progenitor [Term] id: CL:0002012 name: Kit-low proerythroblast namespace: cell def: "A proerythoblast that is Kit-low, Lyg76-positive, and CD71-positive." [GOC:ak, GOC:tfm, PMID:19805084] comment: Markers are associated with mouse cells. is_a: CL:0000547 ! proerythroblast relationship: develops_from CL:0002000 ! Kit-positive erythroid progenitor cell [Term] id: CL:0002013 name: GlyA-positive basophillic erythroblast namespace: cell def: "A basophilic erythroblast that is GlyA-positive." [GOC:ak, GOC:tfm, PMID:1638021] comment: Markers are associated with human cells. is_a: CL:0000549 ! basophilic erythroblast relationship: develops_from CL:0002004 ! CD34-negative, GlyA-negative proerythroblast [Term] id: CL:0002014 name: Kit-negative, Ly-76 high basophilic erythroblast namespace: cell def: "A basophilic erythroblast that is Lyg 76-high and is Kit-negative." [GOC:ak, GOC:tfm, PMID:19805084] comment: Cell surface markers are associated with mouse cells. is_a: CL:0000549 ! basophilic erythroblast relationship: develops_from CL:0002012 ! Kit-low proerythroblast [Term] id: CL:0002015 name: Kit-negative, Ly-76 high polychromatophilic erythroblast namespace: cell def: "A polychromatophilic erythroblast that is Lyg 76-high and is Kit-negative." [GOC:ak, GOC:tfm, PMID:19805084] synonym: "late basophilic and polychromatophilic erythroblast" BROAD [] is_a: CL:0000550 ! polychromatophilic erythroblast relationship: develops_from CL:0002014 ! Kit-negative, Ly-76 high basophilic erythroblast [Term] id: CL:0002016 name: CD71-low, GlyA-positive polychromatic erythroblast namespace: cell def: "A polychromatiic erythroblast that is Gly-A-positive and CD71-low." [GOC:ak, GOC:tfm, PMID:1638021] comment: Cell surface markers are associated with human cells. is_a: CL:0000550 ! polychromatophilic erythroblast relationship: develops_from CL:0002013 ! GlyA-positive basophillic erythroblast [Term] id: CL:0002017 name: Kit-negative, Ly-76 high orthochromatophilic erythroblasts namespace: cell def: "An orthochromatophilic erythroblast that is ter119-high, CD71-low, and Kit-negative." [GOC:ak, GOC:tfm, PMID:19805084] comment: Cell surface markers associated with mouse cells. is_a: CL:0000552 ! orthochromatic erythroblast relationship: develops_from CL:0002015 ! Kit-negative, Ly-76 high polychromatophilic erythroblast [Term] id: CL:0002018 name: CD71-negative, GlyA-positive orthochromatic erythroblast namespace: cell def: "An erythroblast that is GlyA-positive and CD71-negative." [GOC:ak, GOC:tfm, PMID:1638021] comment: Markers associated with human cells. is_a: CL:0000552 ! orthochromatic erythroblast relationship: develops_from CL:0002016 ! CD71-low, GlyA-positive polychromatic erythroblast [Term] id: CL:0002019 name: Ly-76 high reticulocyte namespace: cell def: "A reticulocyte that is Ly76-high and is Kit-negative." [GOC:ak, GOC:tfm, PMID:18539294] comment: Marker associated with mouse cells. is_a: CL:0002422 ! enucleated reticulocyte relationship: develops_from CL:0002017 ! Kit-negative, Ly-76 high orthochromatophilic erythroblasts [Term] id: CL:0002020 name: GlyA-positive reticulocytes namespace: cell def: "A reticulocyte that is GlyA-positive." [GOC:ak, GOC:tfm, PMID:1638021] comment: Markers is associated with human cells. is_a: CL:0002422 ! enucleated reticulocyte relationship: develops_from CL:0002018 ! CD71-negative, GlyA-positive orthochromatic erythroblast [Term] id: CL:0002021 name: GlyA-positive erythrocyte namespace: cell def: "An enucleate erythrocyte that is GlyA-positive." [GOC:ak, GOC:tfm, PMID:20134094] comment: Marker is associated with human cell types. is_a: CL:0000595 ! enucleate erythrocyte relationship: develops_from CL:0002020 ! GlyA-positive reticulocytes [Term] id: CL:0002022 name: Ly-76 high positive erythrocyte namespace: cell def: "An enucleate erythrocyte that is Lyg-76-high." [GOC:ak, GOC:tfm, PMID:19805084] comment: Marker is associated with mouse cell types. is_a: CL:0000595 ! enucleate erythrocyte relationship: develops_from CL:0002019 ! Ly-76 high reticulocyte [Term] id: CL:0002023 name: CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell namespace: cell def: "A megakaroycotye progenitor cell that is CD34-positive, CD41-positive and CD42-positive on the cell surface." [GOC:ak, GOC:tfm, PMID:15232614] comment: Markers are associated with human cell type. is_a: CL:0000553 ! megakaryocyte progenitor cell relationship: develops_from CL:0002025 ! CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell [Term] id: CL:0002024 name: Kit-positive megakaryocyte progenitor cell namespace: cell def: "A megakaryocyte progenitor cell that is Kit-positive, CD41-positive, CD9-positive, Sca-1-negative, IL7ralpha-negative, CD150-negative, and Fcgamma receptor II/III-low." [GOC:ak, GOC:tfm, PMID:16951553] comment: Markers are associated with mouse cells. is_a: CL:0000553 ! megakaryocyte progenitor cell relationship: develops_from CL:0002006 ! Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell [Term] id: CL:0002025 name: CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell namespace: cell def: "A megakaryocyte progenitor cell that is CD34-positive, CD41-positive, and CD42-negative." [GOC:ak, GOC:tfm, PMID:15232614] comment: Markers are commonly associated with human cells. is_a: CL:0000553 ! megakaryocyte progenitor cell relationship: develops_from CL:0002005 ! CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell [Term] id: CL:0002026 name: CD34-negative, CD41-positive, CD42-positive megakaryocyte cell namespace: cell def: "A megakaryocyte progenitor cell that is CD34-negative, CD41-positive and CD42-positive." [GOC:ak, GOC:tfm, PMID:15232614] comment: Markers are commonly associated with human cells. is_a: CL:0000556 ! megakaryocyte relationship: develops_from CL:0002023 ! CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell [Term] id: CL:0002027 name: CD9-positive, CD41-positive megakaryocyte cell namespace: cell def: "A megakaryocyte cell with is CD9-positive and CD41-positive." [GOC:tfm] comment: Markers are commonly associated with mouse cells. is_a: CL:0000556 ! megakaryocyte relationship: develops_from CL:0002024 ! Kit-positive megakaryocyte progenitor cell [Term] id: CL:0002028 name: basophil mast progenitor cell namespace: cell def: "A cell type that can give rise to basophil and mast cells. This cell is CD34-positive, CD117-positive, CD125-positive, FceRIa-negative, and T1/ST2-negative, and expresses Gata-1, Gata-2, C/EBPa" [GOC:ak, GOC:dsd, GOC:tfm, PMCID:PMC1312421] comment: There may be an intermediate cell type. These cells also CD13-positive, CD16-positive, CD32-positive, and integrin beta 7-positive. Transcription factors: GATA1-positive, MCP-1-positive, mitf-positive, PU.1-positive, and CEBP/a-low. synonym: "BMCP" EXACT [] is_a: CL:0000839 ! myeloid lineage restricted progenitor cell relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell [Term] id: CL:0002029 name: Fc-epsilon RIalpha-low mast cell progenitor namespace: cell def: "A lineage-negative, Kit-positive, CD45-positive mast cell progenitor that is Fc-epsilon RIalpha-low." [GOC:tfm, PMCID:PMC1312421] is_a: CL:0000831 ! mast cell progenitor relationship: develops_from CL:0002044 ! Kit-positive, integrin beta7-high basophil mast progenitor cell [Term] id: CL:0002030 name: Fc-epsilon RIalpha-high basophil progenitor cell namespace: cell def: "A lineage negative, Sca1-negative basophil progenitor cell that is Fc epsilon RIalpha-high." [GOC:tfm, PMCID:PMC1312421] comment: Markers are associated with mouse cells. is_a: CL:0000613 ! basophil progenitor cell relationship: develops_from CL:0002044 ! Kit-positive, integrin beta7-high basophil mast progenitor cell [Term] id: CL:0002031 name: hematopoietic lineage restricted progenitor cell namespace: cell def: "A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells." [GOC:tfm, PMID:19022770] is_a: CL:0000988 ! hematopoietic cell relationship: develops_from CL:0002032 ! hematopoietic oligopotent progenitor cell [Term] id: CL:0002032 name: hematopoietic oligopotent progenitor cell namespace: cell def: "A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers." [GOC:tfm, PMID:19022770] is_a: CL:0000988 ! hematopoietic cell relationship: develops_from CL:0000837 ! hematopoietic multipotent progenitor cell [Term] id: CL:0002033 name: short term hematopoietic stem cell namespace: cell def: "A hematopoietic stem cell capable of rapid replenishment of myeloerythroid progenitors and limited self renewal capability. This cell is Kit-positive, Spa-1-positive, CD34-positive, CD150-positive, and is Flt3-negative." [GOC:tfm, PMID:15572596, PMID:19022770] comment: Markers are associated with mouse cells. synonym: "ST stem cell" EXACT [] is_a: CL:0001008 ! Kit and Sca1-positive hematopoietic stem cell relationship: develops_from CL:0002034 ! long term hematopoietic stem cell [Term] id: CL:0002034 name: long term hematopoietic stem cell namespace: cell def: "A hematopoietic stem cell with long term self renewal capability. This cell is Kit-positive, Spa-1-positive, CD150-positive, CD90-low, CD34-negative and Flt3-negative." [GOC:tfm, PMID:15572596, PMID:17582345] comment: Markers are associated with mouse cells. synonym: "LT stem cell" EXACT [] is_a: CL:0001008 ! Kit and Sca1-positive hematopoietic stem cell [Term] id: CL:0002035 name: Slamf1-negative multipotent progenitor cell namespace: cell def: "A hematopoietic progenitor that has restricted self-renewal capability. Cell is Kit-positive, Ly6-positive, CD150-negative and Flt3-negative." [GOC:tfm, PMID:19022770] comment: Markers are associated with mouse cells. is_a: CL:0000837 ! hematopoietic multipotent progenitor cell relationship: develops_from CL:0002036 ! Slamf1-positive multipotent progenitor cell [Term] id: CL:0002036 name: Slamf1-positive multipotent progenitor cell namespace: cell def: "A hematopoietic progenitor that has some limited self-renewal capability. Cells are lin-negative, Kit-positive, CD34-positive, and Slamf1-positive." [GOC:tfm, PMID:19022770] comment: Markers are associated with mouse cells. synonym: "KSL cell" EXACT [] is_a: CL:0000837 ! hematopoietic multipotent progenitor cell relationship: develops_from CL:0002033 ! short term hematopoietic stem cell [Term] id: CL:0002037 name: CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell namespace: cell def: "Intraepithelial T cells with a memory phenotype of CD2-positive, CD5-positive, and CD44-positive." [GOC:tfm, PMID:16048545] synonym: "memory alpha beta IEL" EXACT [PMID:16048545] is_a: CL:0000793 ! CD4-positive, alpha-beta intraepithelial T cell [Term] id: CL:0002038 name: T follicular helper cell namespace: cell def: "A CD4-positive, CXCR5-positive, CCR7-negative alpha-beta T cell located in follicles of secondary lymph nodes that expresses is BCL-6-high, ICOS-high and PD1-high, and stimulates follicular B cells to undergo class-switching and antibody production." [GOC:tfm, PMID:19855402] synonym: "T(FH)" EXACT [PMID:20207847] synonym: "Tfh" EXACT [PMID:20383172] is_a: CL:0000492 ! CD4-positive helper T cell relationship: develops_from CL:0000896 ! activated CD4-positive, alpha-beta T cell [Term] id: CL:0002039 name: immature NK T cell stage I namespace: cell def: "A CD24-high, CD4-low, CD8-low, CD44-negative, NK1.1-negative NK T cell." [GOC:tfm, PMID:17589542] is_a: CL:0000914 ! immature NK T cell relationship: develops_from CL:0000809 ! double-positive, alpha-beta thymocyte [Term] id: CL:0002040 name: immature NK T cell stage II namespace: cell def: "A CD24-low, CD44-negative, NK1.1-negative NK T cell." [GOC:tfm, PMID:17589542, http://www.immgen.org/index_content.html] comment: NKT.44-NK1.1-.Th was assigned as an exact synonym based on sorting strategy displayed at immgene.org. synonym: "NKT.44-NK1.1-.Th" EXACT [] is_a: CL:0000914 ! immature NK T cell relationship: develops_from CL:0002039 ! immature NK T cell stage I [Term] id: CL:0002041 name: immature NK T cell stage III namespace: cell def: "A CD24-low, CD44-positive, DX5-low, NK1.1-negative NK T cell." [PMID:17589542] synonym: "NKT.44+.NK1.1-.Th" BROAD [] is_a: CL:0000914 ! immature NK T cell relationship: develops_from CL:0002040 ! immature NK T cell stage II [Term] id: CL:0002042 name: immature NK T cell stage IV namespace: cell def: "A CD24-low, CD44-positive, DX5-high, NK1.1-negative NK T cell." [GOC:tfm, PMID:17589542, http://www.immgen.org/index_content.html] synonym: "NKT.44+.NK1.1-.Th" BROAD [] is_a: CL:0000914 ! immature NK T cell relationship: develops_from CL:0002041 ! immature NK T cell stage III [Term] id: CL:0002043 name: CD34-positive, CD38-negative multipotent progenitor cell namespace: cell def: "A hematopoietic multipotent progenitor cell that is CD34-positive, CD38-negative, CD45RA-negative, and CD90-negative." [GOC:tfm, PMID:18371405, PMID:19022770] comment: Cell markers are associated with human hematopoietic multipotent progenitor cells. is_a: CL:0000837 ! hematopoietic multipotent progenitor cell relationship: develops_from CL:0001024 ! CD34-positive, CD38-negative hematopoietic stem cell [Term] id: CL:0002044 name: Kit-positive, integrin beta7-high basophil mast progenitor cell namespace: cell def: "A basophil mast progenitor cell that is Beta-7 integrin-high, Kit-positive FcRgammaII/III-positive and Sca1-negative." [GOC:ak, GOC:tfm] comment: Markers are associated with mouse cells. is_a: CL:0002028 ! basophil mast progenitor cell [Term] id: CL:0002045 name: Fraction A pre-pro B cell namespace: cell def: "A pro-B cell that CD45R/B220-positive, CD43-positive, HSA-low, BP-1-negative and Ly6c-negative. This cell type is also described as being lin-negative, AA4-positive, Kit-positive, IL7Ra-positive and CD45R-positive." [GOC:ak, GOC:tfm, PMID:12633665, PMID:17582343, http://www.immgen.org/index_content.html] comment: Markers associated with mouse cells. synonym: "fraction A" EXACT [] synonym: "pre pro B cell" RELATED [] is_a: CL:0000826 ! pro-B cell [Term] id: CL:0002046 name: early pro-B cell namespace: cell def: "A pro-B cell that is CD22-positive, CD34-positive, CD38-positive and has TdT activity. Pre-BCR is expressed on the cell surface. Cell is CD19-negative, CD20-negative, complement receptor type 2-negative and CD10-low. D-to-J recombination of the heavy chain occurs at this stage." [GOC:tfm, PMID:18432934] comment: Markers are commonly associated with human cells. is_a: CL:0000826 ! pro-B cell [Term] id: CL:0002047 name: Fraction B precursor B cell namespace: cell def: "A precursor B cell that is CD45RA-positive, CD43-positive, CD24-positive and BP-1-negative." [GOC:ak, GOC:tfm, PMID:18432934] comment: Markers are commonly associated with mouse cells. synonym: "Fr. B" EXACT [] synonym: "Fraction B" EXACT [] is_a: CL:0002400 ! Fraction B/C precursor B cell relationship: develops_from CL:0002045 ! Fraction A pre-pro B cell [Term] id: CL:0002048 name: late pro-B cell namespace: cell def: "A pre-B cell precursor is CD19-low, CD22-positive , CD34-positive, CD38-positive." [GOC:tfm, PMID:18432934] is_a: CL:0000817 ! precursor B cell relationship: develops_from CL:0002046 ! early pro-B cell [Term] id: CL:0002049 name: Fraction C precursor B cell namespace: cell def: "A precursor B cell is CD45R-positive, CD43-positive, CD24-positive, and BP-positive. Intracellularly expression of surrogate light chain, Rag1 and Rag2, TdT, occurs while there is no expression of mu heavy chain." [GOC:tfm, PMID:17582343] synonym: "Fraction C" RELATED [] is_a: CL:0002400 ! Fraction B/C precursor B cell relationship: develops_from CL:0002047 ! Fraction B precursor B cell [Term] id: CL:0002050 name: Fraction C' precursor B cell namespace: cell def: "A pre-BCR-positive precursor B cell that is CD24-high, CD25-positive, CD43-positive, CD45R-positive and BP-positive." [GOC:tfm, PMID:17582343] synonym: "Fr. C'" EXACT [] synonym: "Fraction C-prime" EXACT [] is_a: CL:0000817 ! precursor B cell relationship: develops_from CL:0002049 ! Fraction C precursor B cell [Term] id: CL:0002051 name: CD38-high pre-BCR positive cell namespace: cell def: "A pre-BCR positive T cell that is CD38-high." [GOC:tfm, PMID:18432934] comment: Markers are associated with human cells. synonym: "large pre-B cell type I" RELATED [] is_a: CL:0000952 ! preBCR-positive large pre-B-II cell relationship: develops_from CL:0002048 ! late pro-B cell [Term] id: CL:0002052 name: Fraction D precursor B cell namespace: cell def: "A pre-B cell that is pre-BCR-negative, and the kappa- and lambda- light immunoglobulin light chain-negative, CD43-low, and is BP-1-positive, CD45R-positive and CD25-positive. This cell type is also described as being AA4-positive, IgM-negative, CD19-positive, CD43-low/negative, and HSA-positive." [GOC:ak, GOC:tfm, PMID:17582343, http://www.immgen.org/index_content.html] synonym: "Fr. D" EXACT [] synonym: "Fraction D pre-B cell" EXACT [GOC:tfm] is_a: CL:0000817 ! precursor B cell relationship: develops_from CL:0002050 ! Fraction C' precursor B cell [Term] id: CL:0002053 name: CD22-positive, CD38-low small pre-B cell namespace: cell def: "A small pre-B cell that is CD22-positive and CD38-low." [GOC:tfm, PMID:18432934] comment: Markers are associated with human cell. RAG expression maybe diminishing. synonym: "small pre-B cell" EXACT [] is_a: CL:0000954 ! small pre-B-II cell relationship: develops_from CL:0002051 ! CD38-high pre-BCR positive cell [Term] id: CL:0002054 name: Fraction E immature B cell namespace: cell def: "An immature B cell that is IgM-positive, CD45R-positive, CD43-low, CD25-negative, and CD127-negative. This cell type has also been described as being AA4-positive, IgM-positive, CD19-positive, CD43-low/negative, and HSA-positive." [GOC:ak, GOC:tfm, PMID:17582343] comment: Markers associated with mouse cells. is_a: CL:0000816 ! immature B cell relationship: develops_from CL:0002052 ! Fraction D precursor B cell [Term] id: CL:0002055 name: CD38-negative immature B cell namespace: cell def: "An immature B cell that is CD38-negative, CD10-low, CD21-low, and CD22-high." [GOC:tfm, PMID:18432934] comment: Markers are associated with human cell type. is_a: CL:0000816 ! immature B cell relationship: develops_from CL:0002053 ! CD22-positive, CD38-low small pre-B cell [Term] id: CL:0002056 name: Fraction F mature B cell namespace: cell def: "A mature B cell subset originally defined as having being CD45R-positive, IgM-positive, IgD-positive and CD43-negative. Subsequent research demonstrated being CD21-positive and CD23-negative and CD93 negative." [GOC:tfm, PMID:17582343, http://www.immgen.org/index_content.html] is_a: CL:0000785 ! mature B cell relationship: develops_from CL:0002054 ! Fraction E immature B cell [Term] id: CL:0002057 name: CD14-positive, CD16-negative classical monocyte namespace: cell def: "A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive," [GOC:tfm, PMID:15615263, PMID:1706877, PMID:19689341] comment: Markers are associated with human monocytes. is_a: CL:0000860 ! classical monocyte [Term] id: CL:0002058 name: Gr1-low non-classical monocyte namespace: cell def: "A resident monocyte that is Gr-1 low, CD43-positive, and CX3CR1-positive." [GOC:tfm, PMID:8890901] comment: Markers are associated with mice. The Gr epitope is used to describe this cell type is found on both Ly6c and Ly6g. However, its the Ly6c that is considered the specific marker, and thus used in the cross-product. Also, this cell-type is sometimes described as being Gr1-negative. is_a: CL:0000875 ! non-classical monocyte relationship: develops_from CL:0002398 ! Gr1-positive, CD43-positive monocyte [Term] id: CL:0002059 name: CD8alpha-positive thymic conventional dendritic cell namespace: cell def: "A conventional thymic dendritic cell that is CD8alpha-positive." [GOC:tfm, PMID:19273629, http://www.immgen.org/index_content.html] synonym: "CD8alpha-alpha-positive thymic conventional dendritic cell" EXACT [] synonym: "DC.8+.Th" EXACT [] is_a: CL:0000941 ! thymic conventional dendritic cell [Term] id: CL:0002060 name: melanophage namespace: cell def: "A melanin-containing macrophage that obtains the pigment by phagocytosis of melanosomes." [GOC:tfm, PMID:20479296, PMID:2943821] is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0002061 name: T-helper 9 cell namespace: cell def: "A T-helper cell that is characterized by secreting interleukin 9 and responding to helminth infections. This cell-type can derives from Th2 cells in the presence of TGF-beta and interleukin 4. TH2 cytokine production is surpressed." [GOC:tfm, PMID:18931678, PMID:19604299, PMID:20154671] synonym: "Th9" EXACT [PMID:18931678] is_a: CL:0000492 ! CD4-positive helper T cell [Term] id: CL:0002062 name: type I pneumocyte namespace: cell def: "A type I pneumocyte is a flattened, branched pneumocyte that covers more than 98% of the alveolar surface. This large cell has thin (50-100 nm) cytoplasmic extensions to form the air-blood barrier essential for normal gas exchange." [GOC:tfm, PMID:20054144, http://www.copewithcytokines.de] synonym: "AT1" EXACT [] synonym: "ATI" EXACT [] synonym: "lung type 1 cells" EXACT [] synonym: "membranous pneumocytes" EXACT [] synonym: "pulmonary alveolar type I cell" EXACT [] synonym: "small alveolar cells" EXACT [] synonym: "squamous alveolar cell" EXACT [] synonym: "squamous alveolar lining cell" EXACT [] synonym: "type 1 alveolar epithelial cells" EXACT [] synonym: "type 1 pneumocyte" EXACT [] synonym: "type I alveolar epithelial cells" EXACT [] xref: BTO:0000780 xref: FMA:62500 is_a: CL:0000322 ! pneumocyte [Term] id: CL:0002063 name: type II pneumocyte namespace: cell def: "A type II pneumocyte is a pneumocyte that modulates the fluid surrounding the alveolar epithelium by secreting and recycling surfactants. This cell type also contributes to tissue repair and can differentiate after injury into a type I pneumocyte. Thicker than squamous alveolar cells, have a rounded apical surface that projects above the level of surrounding epithelium. The free surface is covered by short microvilli." [GOC:tfm, ISBN:0412046911, PMID:8540632, http://www.copewithcytokines.de] synonym: "AT2" EXACT [] synonym: "ATII" EXACT [] synonym: "TII" EXACT [] synonym: "cuboidal type II cell" EXACT [] synonym: "granular pneumocyte" EXACT [] synonym: "great alveolar cell" EXACT [] synonym: "lung type 2 cell" EXACT [] synonym: "lung type II cell" RELATED [] synonym: "type 2 alveolar epithelial cell" EXACT [] synonym: "type 2 alveolocyte" EXACT [] synonym: "type 2 pneumocyte" EXACT [] synonym: "type II alveolar epithelial cell" EXACT [] synonym: "type II alveolocyte" EXACT [] xref: BTO:0000538 xref: FMA:62501 is_a: CL:0000322 ! pneumocyte [Term] id: CL:0002064 name: pancreatic acinar cell namespace: cell def: "A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules." [GOC:tfm, ISBN:0517223651, PMID:20395539, http://63.198.234.228/OpenFMA/Acinar%20cell%20of%20pancreas.html, http://www.copewithcytokines.de] synonym: "acinar cell of pancreas" EXACT [] xref: BTO:0000028 xref: FMA:63032 is_a: CL:0000083 ! epithelial cell of pancreas is_a: CL:0000622 ! acinar cell [Term] id: CL:0002066 name: Feyrter cell namespace: cell def: "A neuroendocrine cell found in the epithelium of the lungs and respiratory tract. This cell type is rounded or elliptical in shape, situated mainly in the basal part of the epithelium; regulates bronchial secretion, smooth muscle contraction, lobular growth, ciliary activity and chemoreception. Cell has an electron-lucent cytoplasm, contains numerous dense-cored vesicles with a clear halo between the core and the limiting membrane." [GOC:tfm, ISBN:0412046911, ISBN:0517223651] synonym: "Kultschitzky cell of bronchiole" EXACT [] synonym: "P cell" BROAD [] synonym: "bronchiolar Kulchitsky cell" EXACT [] synonym: "respiratory enterochromaffin cell " EXACT [] xref: FMA:14118 is_a: CL:0000165 ! neuroendocrine cell [Term] id: CL:0002067 name: type A enterocrine cell namespace: cell def: "An enterocrine cell that produces glucagon." [GOC:tfm, ISBN:0412046911] xref: FMA:62939 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000170 ! glucagon secreting cell [Term] id: CL:0002068 name: Purkinje myocyte namespace: cell def: "Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter." [FMA:0412046911, GOC:tfm, PMID:19939742] synonym: "Purkinje cell fiber" EXACT [] synonym: "Purkinje muscle cell" EXACT [] synonym: "myocytus conducens cardiacus" EXACT [] xref: BTO:0001032 xref: FMA:14146 is_a: CL:0002086 ! specialized cardiac myocyte [Term] id: CL:0002069 name: type II vestibular sensory cell namespace: cell def: "Mostly cylindrical, resemble Type 1 in their contents and the presence of a kinocilium and stereocilium apically; much greater variation in size, some almost span the entire thickness of the sensory epithelium, while others are smaller than Type 1; receive multiple efferent nerve boutons around their bases as well as afferent endings, which are small expansions rather than chalices." [GOC:tfm, ISBN:0517223651] synonym: "type 2 vestibular hair cell" EXACT [] synonym: "type 2 vestibular sensory cell" EXACT [] synonym: "type II hair cell" EXACT [] xref: FMA:67909 is_a: CL:0000609 ! vestibular hair cell [Term] id: CL:0002070 name: type I vestibular sensory cell namespace: cell def: "Bottle-shaped with narrow neck; broad, rounded basal portion where nucleus is located; stereocilia and a single kinocilium is present apically; receive nerve bouton at their base from an afferent cup-shaped (chalice or calyx) nerve ending." [GOC:tfm, ISBN:0517223651] synonym: "type 1 vestibular hair cell" EXACT [] synonym: "type 1 vestibular sensory cell" EXACT [] synonym: "type I hair cell" EXACT [] xref: FMA:62352 is_a: CL:0000609 ! vestibular hair cell [Term] id: CL:0002071 name: enterocyte of epithelium of large intestine namespace: cell def: "Columnar cell which populate the epithelium of large intestine and absorb water. This cell is the most numerous of the epithelial cell types in the large intestine; bear apical microvilli, contain secretory granules in their apical cytoplasm; secretion appears to be largely mucins, but is also rich in antibodies of the IgA type." [GOC:tfm, ISBN:0517223651, http://63.198.234.228/OpenFMA/Vacuolar%20absorptive%20cell.html] synonym: "columnar cell" EXACT [] synonym: "columnar cell of the colon" EXACT [] synonym: "vacuolar absorptive cell" EXACT [] xref: BTO:0002484 xref: FMA:63638 xref: FMA:66771 is_a: CL:0002253 ! epithelial cell of large intestine [Term] id: CL:0002072 name: nodal myocyte namespace: cell def: "A specialized cardiac myocyte in the sinuatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery." [FMA:67101, GOC:tfm, http://63.198.234.228/OpenFMA/Nodal%20myocyte.html] synonym: "P cell" EXACT [] synonym: "myocytus nodalis" EXACT [] synonym: "pacemaker cell" EXACT [] xref: BTO:0004190 xref: FMA:67101 is_a: CL:0002086 ! specialized cardiac myocyte [Term] id: CL:0002073 name: transitional myocyte namespace: cell def: "Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes." [FMA:67142, GOC:tfm, http://63.198.234.228/OpenFMA/Transitional%20myocyte.html] xref: FMA:67142 is_a: CL:0002086 ! specialized cardiac myocyte [Term] id: CL:0002074 name: myocardial endocrine cell namespace: cell def: "The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides)." [FMA:67111, GOC:tfm, http://63.198.234.228/OpenFMA/Myocardial%20endocrine%20cell.html] xref: FMA:67111 is_a: CL:0000163 ! endocrine cell is_a: CL:0002086 ! specialized cardiac myocyte [Term] id: CL:0002075 name: brush cell of trachebronchial tree namespace: cell def: "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known." [GOC:tfm, ISBN:0517223651, PMID:15817800, http://63.198.234.228/OpenFMA/Brush%20cell.html] synonym: "pulmonary brush cell" RELATED [] is_a: CL:0002204 ! brush cell [Term] id: CL:0002076 name: endo-epithelial cell namespace: cell def: "An epithelial cell derived from endoderm." [FMA:69075, GOC:tfm, http://63.198.234.228/OpenFMA/Endo-epithelial%20cell.html] xref: FMA:69075 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000223 ! endodermal cell [Term] id: CL:0002077 name: ecto-epithelial cell namespace: cell def: "An epithelial cell derived from ectoderm." [FMA:69074, http://63.198.234.228/OpenFMA/Ecto-epithelial%20cell.html] xref: FMA:69074 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000221 ! ectodermal cell [Term] id: CL:0002078 name: meso-epithelial cell namespace: cell def: "Epithelial cell derived from mesoderm or mesenchyme." [FMA:69076, GOC:tfm, http://63.198.234.228/OpenFMA/Meso-epithelial%20cell.html] synonym: "epithelial mesenchymal cell" EXACT [] xref: FMA:69076 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000222 ! mesodermal cell [Term] id: CL:0002079 name: pancreatic ductal cell namespace: cell def: "Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH." [FMA:63099, GOC:tfm, PMID:14740223] xref: FMA:63099 is_a: CL:0000069 ! branched duct epithelial cell is_a: CL:0000083 ! epithelial cell of pancreas [Term] id: CL:0002080 name: pancreatic centro-acinar cell namespace: cell def: "A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types." [GOC:tfm, PMID:12142741, PMID:20018761, PMID:8185160] synonym: "centroacinar cell of Langerhans" EXACT [] synonym: "pancreatic centroacinar cell" EXACT [] xref: FMA:62455 is_a: CL:0000083 ! epithelial cell of pancreas [Term] id: CL:0002081 name: type II cell of carotid body namespace: cell def: "This cell resembles a glia cell, express the glial marker S100 and act as a supporting cell to type I cell. This cell is located in a small cluster of type I and type II cells near the fork of the carotid artery." [GOC:tfm, PMID:7938227, http://en.wikipedia.org/wiki/Carotid_body] synonym: "sheath cell of carotid body" EXACT [] xref: FMA:84187 is_a: CL:0000703 ! sustentacular cell is_a: CL:0002256 ! supporting cell of carotid body [Term] id: CL:0002082 name: type II cell of adrenal medulla namespace: cell def: "A chromaffin cell of the adrenal medulla that produces epinephrine." [GOC:tfm] synonym: "adremergic chromaffin cell" EXACT [] synonym: "adrenal secreting cell of the adrenal medulla" EXACT [] synonym: "epiniphrine secreting cell of the adrenal medulla" EXACT [] xref: FMA:69322 is_a: CL:0000336 ! adrenal medulla chromaffin cell is_a: CL:0000454 ! epinephrin secreting cell [Term] id: CL:0002083 name: type I cell of adrenal medulla namespace: cell def: "A chromaffin cell of the adrenal medulla that produces norepinephrine." [GOC:tfm, ISBN:068340007X] synonym: "noradrenergic chromaffin cell" EXACT [] xref: FMA:69321 is_a: CL:0000336 ! adrenal medulla chromaffin cell is_a: CL:0000459 ! norepinephrin secreting cell [Term] id: CL:0002084 name: Boettcher cell namespace: cell def: "A Boettcher cell is a polyhedral cells on the basilar membrane of the cochlea, and is located beneath Claudius cells. A Boettcher cell is considered a supporting cell for the organ of Corti, and is present only in the lower turn of the cochlea. These cells interweave with each other, and project microvilli into the intercellular space. Because of their structural specialization, a Boettcher cell is believed to play a significant role in the function of the cochlea. They demonstrate high levels of calmodulin, and may be involved in mediating Ca(2+) regulation and ion transport." [GOC:tfm, http://en.wikipedia.org/wiki/Boettcher_cell] synonym: "Boettcher's cell" EXACT [] synonym: "Bottcher cell" EXACT [] synonym: "Bottcher's cell" EXACT [] is_a: CL:0002315 ! supporting cell of cochlea [Term] id: CL:0002085 name: tanycyte namespace: cell alt_id: CL:0000643 def: "Specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS. Resemble spongioblasts seen in developing brain. Found in the adult brain in the third ventricle, cerebral aqueduct, spinal canal and floor of the fourth ventricle." [GOC:tfm, http://neurolex.org/wiki/Category:Tanycyte] synonym: "stretch cell" EXACT [] xref: BTO:0001953 xref: FMA:54560 is_a: CL:0000683 ! ependymoglial cell [Term] id: CL:0002086 name: specialized cardiac myocyte namespace: cell def: "A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart." [FMA:67968, GOC:tfm] xref: FMA:67968 is_a: CL:0000746 ! cardiac muscle cell [Term] id: CL:0002087 name: nongranular leukocyte namespace: cell def: "A leukocyte that lacks granules." [GOC:tfm] synonym: "agranular leukocyte" EXACT [] xref: FMA:62855 is_a: CL:0000738 ! leukocyte [Term] id: CL:0002088 name: interstitial cell of Cajal namespace: cell def: "This is a cell found in the gastrointestinal tract of mammals and serves as a pacemaker that triggers gut contraction. ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which gastrointestinal stromal tumors (GISTs) arise." [GOC:tfm, PMID:16460275, PMID:19520112] comment: Some argue this cell type is of mesenchymal origin. synonym: "ICC" EXACT [] xref: BTO:0003914 xref: FMA:86573 is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0002089 name: nuocyte namespace: cell def: "A leukocyte cell capable of secreting IL-13 in response to a helminth infection. This cell is lineage-negative, ICOS-positive, IL1RL1-positive, IL7Ralpha-positive, and IL17Br-positive." [GOC:tfm, PMID:20200518] is_a: CL:0000738 ! leukocyte [Term] id: CL:0002090 name: polar body namespace: cell def: "One of two small cells formed by the first and second meiotic division of oocytes." [GOC:tfm, ISBN:068340007X] xref: FMA:85543 xref: WBbt:0008429 xref: XAO:0000262 is_a: CL:0000021 ! female germ cell relationship: part_of CL:0000023 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! oocyte [Term] id: CL:0002091 name: primary polar body namespace: cell def: "A small cell formed by the first meiotic division of oocytes." [GOC:tfm, ISBN:068340007X] synonym: "polocytus primarius" EXACT [] xref: FMA:18650 is_a: CL:0002090 ! polar body [Term] id: CL:0002092 name: bone marrow cell namespace: cell def: "A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells." [GOC:tfm, ISBN:0618947256] xref: BTO:0004850 xref: FMA:83621 is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0002093 name: secondary polar body namespace: cell def: "A small cell formed by the second meiotic division of oocytes. In mammals, the second polar body may fail to form unless the ovum has been penetrated by a sperm cell." [GOC:tfm, ISBN:068340007X] synonym: "polocytus secundarius" EXACT [] xref: FMA:18651 is_a: CL:0002090 ! polar body [Term] id: CL:0002094 name: interstitial cell of ovary namespace: cell def: "A cell that makes up the loose connective tissue of the ovary." [GOC:tfm] xref: FMA:18709 is_a: CL:0002132 ! stromal cell of ovary [Term] id: CL:0002095 name: hilus cell of ovary namespace: cell def: "A cell in the hilum of the ovary that produces androgens." [GOC:tfm, ISBN:068340007X] synonym: "hilar cell of ovary" EXACT [] xref: FMA:18710 is_a: CL:0000593 ! androgen secreting cell is_a: CL:0002132 ! stromal cell of ovary [Term] id: CL:0002096 name: internodal tract myocyte namespace: cell def: "A specialised myocyte that lies between the sinuatrial node and the atrioventricular node and is involved in the conduction of electrical signals." [GOC:tfm, ISBN:0781729300] xref: FMA:223275 is_a: CL:0002086 ! specialized cardiac myocyte [Term] id: CL:0002097 name: cortical cell of adrenal gland namespace: cell def: "A cell of the adrenal cortex. Cell types include those that synthesize and secrete chemical derivatives (steroids) of cholesterol." [GOC:tfm] synonym: "adrenal cortex cell" EXACT [] synonym: "adrenocortical cell" EXACT [] xref: FMA:69545 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000174 ! steroid hormone secreting cell is_a: CL:0002078 ! meso-epithelial cell [Term] id: CL:0002098 name: regular cardiac myocyte namespace: cell def: "A cardiac myocyte that is connected together by transverse intercalated discs at a regular interval." [GOC:tfm] synonym: "regular cardiac muscle cell" EXACT [] synonym: "regular cardiac muscle fiber" EXACT [] xref: FMA:67967 is_a: CL:0000746 ! cardiac muscle cell [Term] id: CL:0002099 name: type I cell of adrenal cortex namespace: cell alt_id: CL:1000423 def: "A small, polyhedral, cell found in rounded groups or curved columns with deeply staining nuclei, scanty basophilic cytoplasm and a few lipid droplets. This cell in the zona glomerulosa produces mineralocorticoids." [GOC:tfm, ISBN:0517223651] synonym: "epithelial cell of zona glomerulosa of adrenal gland" EXACT [] xref: FMA:69273 is_a: CL:0000456 ! mineralocorticoid secreting cell is_a: CL:0002097 ! cortical cell of adrenal gland [Term] id: CL:0002100 name: regular interventricular cardiac myocyte namespace: cell def: "A regular cardiac myocyte of the interventricular region of the heart." [GOC:tfm] xref: FMA:228792 is_a: CL:0002098 ! regular cardiac myocyte [Term] id: CL:0002101 name: CD38-positive naive B cell namespace: cell def: "A CD38-positive naive B cell is a mature B cell that has the phenotype CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, and that has not yet been activated by antigen in the periphery." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000788 ! naive B cell [Term] id: CL:0002102 name: CD38-negative naive B cell namespace: cell def: "A CD38-negative naive B cell is a mature B cell that has the phenotype CD38-negative, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000788 ! naive B cell [Term] id: CL:0002103 name: IgG-positive double negative memory B cell namespace: cell def: "An IgG-positive double negative memory B cell is a double negative memory B cell with the phenotype IgG-positive, IgD-negative, and CD27-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000981 ! double negative memory B cell [Term] id: CL:0002104 name: IgG-negative double negative memory B cell namespace: cell def: "An IgG-negative double negative memory B cell is a double negative memory B cell with the phenotype IgG-negative, IgD-negative, and CD27-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000981 ! double negative memory B cell [Term] id: CL:0002105 name: CD38-positive IgG memory B cell namespace: cell def: "A CD38-positive IgG memory B cell is a class switched memory B cell that expresses IgG on the cell surface with the phenotype CD38-positive and IgG-positive." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000979 ! IgG memory B cell [Term] id: CL:0002106 name: IgD-positive CD38-positive IgG memory B cell namespace: cell def: "An IgD-positive CD38-positive IgG memory B cell is a CD38-positive IgG-positive class switched memory B cell that has class switched and expresses IgD on the cell surface with the phenotype IgD-positive, CD38-positive, and IgG-positive." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002105 ! CD38-positive IgG memory B cell [Term] id: CL:0002107 name: IgD-negative CD38-positive IgG memory B cell namespace: cell def: "An IgD-negative CD38-positive IgG memory B cell is a CD38-positive IgG-positive that has class switched and lacks expression of IgD on the cell surface with the phenotype IgD-negative, CD38-positive, and IgG-positive." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002105 ! CD38-positive IgG memory B cell [Term] id: CL:0002108 name: CD38-negative IgG memory B cell namespace: cell def: "A CD38-negative IgG memory B cell is a IgG-positive class switched memory B cell that has class switched and expresses IgG on the cell surface with the phenotype CD38-negative, IgD-negative, and IgG-positive." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000979 ! IgG memory B cell [Term] id: CL:0002109 name: B220-positive CD38-positive naive B cell namespace: cell def: "A B220-positive CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-positive, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, and that has not yet been activated by antigen in the periphery." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002101 ! CD38-positive naive B cell [Term] id: CL:0002110 name: B220-low CD38-positive naive B cell namespace: cell def: "A B220-low CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-low, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002101 ! CD38-positive naive B cell [Term] id: CL:0002111 name: CD38-negative unswitched memory B cell namespace: cell def: "An CD38-negative unswitched memory B cell is an unswitched memory B cell that has the phenotype CD38-negative, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000970 ! unswitched memory B cell [Term] id: CL:0002112 name: B220-positive CD38-negative unswitched memory B cell namespace: cell def: "A B220-positive CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-positive, CD38-negative, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002111 ! CD38-negative unswitched memory B cell [Term] id: CL:0002113 name: B220-low CD38-negative unswitched memory B cell namespace: cell def: "A B220-low CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-low, CD38-negative, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002111 ! CD38-negative unswitched memory B cell [Term] id: CL:0002114 name: CD38-positive unswitched memory B cell namespace: cell def: "A CD38-positive unswitched memory B cell is an unswitched memory B cell that has the phenotype CD38-positive, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000970 ! unswitched memory B cell [Term] id: CL:0002115 name: B220-positive CD38-positive unswitched memory B cell namespace: cell def: "A B220-positive CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-positive, CD38-positive, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002114 ! CD38-positive unswitched memory B cell [Term] id: CL:0002116 name: B220-low CD38-positive unswitched memory B cell namespace: cell def: "A B220-low CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-low, CD38-positive, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002114 ! CD38-positive unswitched memory B cell [Term] id: CL:0002117 name: IgG-negative class switched memory B cell namespace: cell def: "A class switched memory B cell that lacks IgG on the cell surface." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0000972 ! class switched memory B cell [Term] id: CL:0002118 name: CD38-negative IgG-negative class switched memory B cell namespace: cell def: "A CD38-negative IgG-negative memory B cell is a IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD38-negative and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002117 ! IgG-negative class switched memory B cell [Term] id: CL:0002119 name: CD38-positive IgG-negative class switched memory B cell namespace: cell def: "A CD38-positive IgG-negative memory B cell is an IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD38-positive and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002117 ! IgG-negative class switched memory B cell [Term] id: CL:0002120 name: CD24-positive CD38-negative IgG-negative class switched memory B cell namespace: cell def: "An CD24-positive CD38-negative IgG-negative memory B cell is a CD38-negative IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD24-positive, CD38-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002118 ! CD38-negative IgG-negative class switched memory B cell [Term] id: CL:0002121 name: CD24-negative CD38-negative IgG-negative class switched memory B cell namespace: cell def: "A CD24-negative CD38-negative IgG-negative memory B cell is a CD38-negative IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD24-negative, CD38-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002118 ! CD38-negative IgG-negative class switched memory B cell [Term] id: CL:0002122 name: B220-positive CD38-positive IgG-negative class switched memory B cell namespace: cell def: "A B220-positive CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-positive, CD38-positive, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002119 ! CD38-positive IgG-negative class switched memory B cell [Term] id: CL:0002123 name: B220-low CD38-positive IgG-negative class switched memory B cell namespace: cell def: "A B220-low CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-low, CD38-positive, and IgG-positive." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002119 ! CD38-positive IgG-negative class switched memory B cell [Term] id: CL:0002124 name: CD27-positive gamma-delta T cell namespace: cell def: "A circulating gamma-delta T cell that is CD27-positive and capable of producing IFN-gamma." [GOC:dsd, GOC:tfm, PMID:19270712] synonym: "gammadelta27-positive" EXACT [] synonym: "gd27-positive" EXACT [] is_a: CL:0000800 ! mature gamma-delta T cell relationship: develops_from CL:0002126 ! CD25-positive, CD27-positive immature gamma-delta T cell [Term] id: CL:0002125 name: CD27-negative gamma-delta T cell namespace: cell def: "A circulating gamma-delta T cell that expresses RORgamma(t), is CD27-negative and is capable of IL17 secretion." [GOC:dsd, GOC:tfm, PMID:19270712] is_a: CL:0000800 ! mature gamma-delta T cell relationship: develops_from CL:0002126 ! CD25-positive, CD27-positive immature gamma-delta T cell [Term] id: CL:0002126 name: CD25-positive, CD27-positive immature gamma-delta T cell namespace: cell def: "A CD25-positive, CD27-positive immature gamma-delta T cell found in the thymus that has an immature phenotype (i.e. CD24-high, CD25-high, CD62L-high, CD44-high, CD2-low, CD5-low)." [GOC:tfm, PMID:19270712] is_a: CL:0000799 ! immature gamma-delta T cell [Term] id: CL:0002127 name: innate effector T cell namespace: cell def: "A T cell with a receptor of limited diversity that is capable of immediate effector functions upon stimulation." [GOC:tfm, PMID:20581831] is_a: CL:0000911 ! effector T cell [Term] id: CL:0002128 name: Tc17 cell namespace: cell def: "A CD8-positive, alpha-beta positive T cell with the phenotype CCR6-positive, CCR5-high, CD45RA-negative, and secreting IL-17 and some IFNg." [GOC:dsd, GOC:tfm, PMID:19201830] comment: Found in the CD27-positive CD28-positive or CD27-negative CD28-positive fractions with the phenotype CCR4-negative and CCR7-negative. synonym: "Tc17 T cell" EXACT [] synonym: "Tc17 T lymphocyte" EXACT [] synonym: "Tc17 T-cell" EXACT [] synonym: "Tc17 T-lymphocyte" EXACT [] is_a: CL:0000908 ! CD8-positive, alpha-beta cytokine secreting effector T cell [Term] id: CL:0002129 name: regular atrial cardiac myocyte namespace: cell def: "Regular cardiac myocyte of a cardiac atrium." [GOC:tfm] synonym: "atrial myocyte" EXACT [] synonym: "regular atrial cardiac muscle fiber" EXACT [] synonym: "regular cardiac muscle cell of atrium" EXACT [] xref: FMA:83108 is_a: CL:0002098 ! regular cardiac myocyte [Term] id: CL:0002130 name: regular interatrial cardiac myocyte namespace: cell def: "A cardiac myocyte of the interatrial region of the heart." [GOC:tfm] xref: FMA:228790 is_a: CL:0002098 ! regular cardiac myocyte [Term] id: CL:0002131 name: regular ventricular cardiac myocyte namespace: cell def: "Regular cardiac myocyte of a cardiac ventricle." [GOC:tfm] synonym: "regular cardiac muscle cell of ventricle" EXACT [] synonym: "regular ventricular cardiac muscle fiber" EXACT [] synonym: "ventricular myocyte" EXACT [] xref: FMA:83109 is_a: CL:0002098 ! regular cardiac myocyte [Term] id: CL:0002132 name: stromal cell of ovary namespace: cell def: "A stomal cell of the ovary" [GOC:tfm] xref: FMA:72299 is_a: CL:0000499 ! stromal cell [Term] id: CL:0002133 name: stromal cell of ovorain cortex namespace: cell def: "A stromal cell of the ovarian cortex." [GOC:tfm] xref: FMA:256169 is_a: CL:0002132 ! stromal cell of ovary [Term] id: CL:0002134 name: stromal cell of ovarian medulla namespace: cell def: "A stromal cell of the ovarian medulla." [GOC:tfm] xref: FMA:256171 is_a: CL:0002132 ! stromal cell of ovary [Term] id: CL:0002135 name: nonkeratinized cell of epidermis namespace: cell def: "Epidermal cells that do not contain keratin. Cell type is usually associated with moist epidermal tissues." [GO:tfm, PMID:1987287] xref: FMA:62880 is_a: CL:0000362 ! epidermal cell [Term] id: CL:0002136 name: type II cell of adrenal cortex namespace: cell def: "A cell in the zona fasciculata that produce glucocorticoids, e.g cortisol." [GOC:tfm, ISBN:0517223651] synonym: "type II cortical cell of adrenal gland" EXACT [] xref: FMA:69547 is_a: CL:0000460 ! glucocorticoid secreting cell is_a: CL:0002097 ! cortical cell of adrenal gland [Term] id: CL:0002137 name: type III cell of adrenal cortex namespace: cell def: "A cell in the zona reticularis that produce sex hormones." [GOC:tfm, ISBN:0517223651] xref: FMA:69564 is_a: CL:0000593 ! androgen secreting cell is_a: CL:0002097 ! cortical cell of adrenal gland [Term] id: CL:0002138 name: endothelial cell of lymphatic vessel namespace: cell alt_id: CL:1000421 def: "A endothelial cell of a lymphatic vessel. The border of the oak leaf-shaped endothelial cell of initial lymphatics are joined by specialized buttons. The discontinuous feature of buttons distinguishes them from zippers in collecting lymphatics, but both types of junctions are composed of proteins typical of adherens junctions and tight junctions found in the endothelium of blood vessels. Buttons seal the sides of flaps of the oak leaf-shaped endothelial cell, leaving open the tips of flaps as routes for fluid entry without disassembly and reformation of intercellular junctions." [GOC:tfm, PMID:17846148] synonym: "lymphatic endothelial cell" EXACT [] xref: BTO:0004167 xref: FMA:68458 is_a: CL:0002139 ! endothelial cell of vascular tree [Term] id: CL:0002139 name: endothelial cell of vascular tree namespace: cell def: "An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels." [GOC:dsd, GOC:tfm, PMID:12768659] comment: These cells are reportedly CD31-positive, CD34-positive, CD144-positive, TAL1-positive. synonym: "cubodial endothelial cell of vascular tree" NARROW [] synonym: "vascular endothelial cell" EXACT [] xref: BTO:0001854 xref: FMA:67755 is_a: CL:0000115 ! endothelial cell [Term] id: CL:0002140 name: acinar cell of sebaceous gland namespace: cell alt_id: CL:0002587 def: "A sebum secreting cell of the skin that secretes sebum into the hair follicles." [GOC:tfm] synonym: "sebocyte" EXACT [] xref: BTO:0004613 xref: FMA:70953 is_a: CL:0000317 ! sebum secreting cell is_a: CL:0000622 ! acinar cell is_a: CL:1000448 ! epithelial cell of sweat gland [Term] id: CL:0002141 name: active chief cell of parathyroid gland namespace: cell def: "A parathyroid chief cell that is actively secreting hormone. Have large Golgi complexes with numerous vesicles and small membrane-bound granules; secretory granules are rare, cytoplasmic glycogen sparse, much of the cytoplasm being occupied by flat sacs of granular endoplasmic reticulum in parallel arrays; in normal humans, inactive chief cells outnumber active chief cells in a ratio of 3-5:1" [FMA:0517223651, GOC:tfm] xref: FMA:69082 is_a: CL:0000446 ! chief cell of parathyroid gland [Term] id: CL:0002142 name: dark cell of eccrine sweat gland namespace: cell def: "A cell pyramidal in shape, with their broad ends facing and forming the greater extent of the lining of the main lumen. Secretes glycoproteins associated with mucus." [ISBN:0517223651] xref: FMA:70659 is_a: CL:0000318 ! sweat secreting cell is_a: CL:0000434 ! eccrine cell [Term] id: CL:0002143 name: dark chief cell of parathyroid cell namespace: cell def: "A chief cell that is smaller than light chief cells and has a smaller and darker nucleus and a finely granular cytoplasm with many granules." [GOC:tfm, ISBN:0721662544] xref: FMA:69080 is_a: CL:0000446 ! chief cell of parathyroid gland [Term] id: CL:0002144 name: capillary endothelial cell namespace: cell def: "An endothelial cell found in capillaries." [GOC:tfm] xref: BTO:0004956 xref: FMA:67756 is_a: CL:0000071 ! blood vessel endothelial cell [Term] id: CL:0002145 name: ciliated columnar cell of tracheobronchial tree namespace: cell def: "A ciliated columnar cell found in the trachea and bronchus. Vary from low to tall columnar; possesses up to 300 cilia at its surface, interspersed with long irregular microvilli with the cilia varying in length from about 6um in the trachea to about 4um in the terminal bronchioles; driving force of the ciliary current in the bronchial tree." [GOC:tfm, ISBN:0517223651] xref: FMA:70542 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree is_a: CL:0005012 ! multi-ciliated epithelial cell relationship: develops_from CL:0002209 ! intermediate epitheliocyte [Term] id: CL:0002146 name: clear cell of eccrine sweat gland namespace: cell def: "A sweat producing cell of eccrine sweat glands. Pyramidal in shape, with its base resting on the basal lamina or myoepitheliocytes, and its microvillus-covered apical plasma membrane line up the intercellular canaliculi. Cell is not stained by hematoxylin or eosin." [GOC:tfm, ISBN:0517223651] xref: FMA:70658 is_a: CL:0000318 ! sweat secreting cell is_a: CL:0000434 ! eccrine cell [Term] id: CL:0002147 name: clear chief cell of parathyroid cell namespace: cell def: "A chief cell of parathyroid glands that does not stain with hematoxylin or eosin. This cell is larger, has a larger nucleus and fewer secretory granules than dark chief cells." [GOC:tfm, ISBN:0618947256] xref: FMA:69081 is_a: CL:0000446 ! chief cell of parathyroid gland [Term] id: CL:0002148 name: dental pulp cell namespace: cell def: "A cell found within the dental pulp." [GOC:tfm, PMID:11087820] xref: BTO:0000339 xref: FMA:87170 is_a: CL:0002159 ! general ecto-epithelial cell [Term] id: CL:0002149 name: epithelial cell of uterus namespace: cell alt_id: CL:1000294 def: "An epithelial cell of the uterus." [GOC:tfm] xref: FMA:256161 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002150 name: epithelioid macrophage namespace: cell def: "Epithelioid macrophage is an activated macrophage that resembles an epithelial cell with finely granular, pale eosinophilic cytoplasm and central, ovoid nucleus (oval or elongate). This cell type is able to merge into one another to form aggregates. The presence of such aggregates may characterize some pathologic conditions, mainly granulomatous inflammation." [MESH:A11.329.372.300, PMID:12673090] synonym: "epithelioid cell" BROAD [] synonym: "epithelioid histocyte" EXACT [MESH:A11.329.372.300, PMID:12673090] synonym: "epitheloid macrophage" EXACT [] xref: FMA:83514 is_a: CL:0000235 ! macrophage relationship: develops_from CL:0000861 ! elicited macrophage [Term] id: CL:0002151 name: late promyelocyte namespace: cell def: "A promyelocyte that is considerably smaller, with more condensed chromatin, and nucleoli are no longer conspicuous." [ISBN:0412046911] xref: FMA:83534 is_a: CL:0000836 ! promyelocyte [Term] id: CL:0002152 name: columnar cell of endocervix namespace: cell def: "A columnar cell of the cervix uteri." [GOC:tfm, ISBN:0721662544] xref: FMA:86486 is_a: CL:0002149 ! epithelial cell of uterus [Term] id: CL:0002153 name: corneocyte namespace: cell def: "The dead keratin-filled squamous cell of the stratum corneum. This cell type lacks a nucleus." [GOC:tfm, ISBN:068340007X] xref: BTO:0001943 xref: FMA:68650 is_a: CL:0000311 ! keratin accumulating cell relationship: develops_from CL:0000312 ! keratinocyte [Term] id: CL:0002154 name: early promyelocyte namespace: cell def: "A promyelocyte with a nucleus that is indented and contains more marginated heterochromatin compared to its precursor cell (myeloblast); cytoplasm is deeply basophilic and contains numerous mitochondria and meandering cysternae of endoplasmic reticulum; largest of the granulocyte lineages." [FMA:0412046911, GOC:tfm] xref: FMA:83533 is_a: CL:0000836 ! promyelocyte [Term] id: CL:0002155 name: echinocyte namespace: cell def: "A crenated erythrocyte with 30+ crenations, bumps or spurs that are the result of damage due to age or disease." [GOC:tfm] synonym: "burr cell" EXACT [] xref: FMA:81099 is_a: CL:0000595 ! enucleate erythrocyte [Term] id: CL:0002157 name: endosteal cell namespace: cell def: "A cell type that makes up the highly vascular membrane lining the marrow cavity of long bones." [FMA:0618947256, GOC:tfm] xref: FMA:86495 is_a: CL:0002078 ! meso-epithelial cell [Term] id: CL:0002158 name: external epithelial cell of tympanic membrane namespace: cell def: "Epithelial cell found on the external side of the tympanic membrane" [GOC:tfm, PMID:5686391] xref: FMA:70558 is_a: CL:0002159 ! general ecto-epithelial cell [Term] id: CL:0002159 name: general ecto-epithelial cell namespace: cell def: "Epithelial cells derived from general body ectoderm and ectoderm placodes." [GOC:tfm] xref: FMA:70556 is_a: CL:0002077 ! ecto-epithelial cell [Term] id: CL:0002160 name: basal external epithelial cell of tympanic membrane namespace: cell def: "A cell type found in the basal epithelial layer on the external side of the tympanic membrane. Cell type is flattened with intracellular spaces of variable dimensions." [PMID:5686391] is_a: CL:0002158 ! external epithelial cell of tympanic membrane [Term] id: CL:0002161 name: superficial external epithelial cell of tympanic membrane namespace: cell def: "A cell type found on the superficial layer of the external side of the tympanic membrane. This cell-type lacks a nucleus." [PMID:5686391] is_a: CL:0002158 ! external epithelial cell of tympanic membrane [Term] id: CL:0002162 name: internal epithelial cell of tympanic membrane namespace: cell def: "An extremely flattened cell type found on the inner side of the tympanic membrane. The surface of this cell type carries sparse pleomorphic microvilli that are more common near the junctional zones." [FMA:5686391, GOC:tfm] xref: FMA:70626 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002163 name: internal pillar cell of cochlea namespace: cell def: "A rod-shpaed cell that forms a single row adjacent to and supporting the inner hair cells." [GOC:tfm, http://www.theodora.com/anatomy/the_internal_ear_or_labyrinth.html] xref: FMA:75722 xref: FMA:75726 is_a: CL:1000191 ! pillar cell [Term] id: CL:0002164 name: external pillar cell of cochlea namespace: cell def: "A rod-shaped cell found in 3 or 4 rows that lie adjacent to and support the outer hair cells." [GOC:tfm, http://www.theodora.com/anatomy/the_internal_ear_or_labyrinth.html] xref: FMA:75727 is_a: CL:1000191 ! pillar cell [Term] id: CL:0002165 name: phalangeal cell namespace: cell def: "A supporting cell that is attached to the basement membrane and forms rows that support the hair cells." [GOC:tfm, ISBN:0618947256] xref: FMA:79800 is_a: CL:0002490 ! organ of Corti supporting cell [Term] id: CL:0002166 name: epithelial cell of Malassez namespace: cell def: "An epithelial cell that remains from the disintegration of the epithelial root sheath involved in the development of teeth." [GOC:tfm, ISBN:0517223651, ISBN:0815129521] synonym: "epithelial cell rests of Malassez " EXACT [] synonym: "epithelial debris of Malassez" EXACT [] xref: FMA:62987 is_a: CL:0002159 ! general ecto-epithelial cell [Term] id: CL:0002167 name: olfactory epithelial cell namespace: cell def: "A specialized cell involved in sensory perception of smell." [GOC:tfm, PMID:7143026] xref: FMA:67870 is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0002168 name: border cell of cochlea namespace: cell def: "A border cell is a slender columnar cell on the medial portion of the basilar membrane." [FMA:0412046911, GOC:tfm] xref: FMA:79798 is_a: CL:0002315 ! supporting cell of cochlea [Term] id: CL:0002169 name: basal cell of olfactory epithelium namespace: cell alt_id: CL:1000395 def: "An epithelial cell located on the basal lamina of the olfactory epithelium." [GOC:tfm, PMID:7143026] xref: FMA:62303 is_a: CL:0002167 ! olfactory epithelial cell [Term] id: CL:0002170 name: keratinized cell of the oral mucosa namespace: cell def: "A keratinized cell located in the hard palate or gingiva." [GOC:tfm, PMID:12014572] is_a: CL:0000237 ! keratinizing barrier epithelial cell is_a: CL:0002336 ! buccal mucosa cell [Term] id: CL:0002171 name: globose cell of olfactory epithelium namespace: cell def: "A rounded or elliptical epithelial cell, with pale-staining open face nucleus and pale cytoplasm rich in free ribosomes and clusters of centrioles; form a distinct basal zone spaced slightly from the basal surface of the epithelium." [GOC:tfm, PMID:17468753] synonym: "blastema cell of olfactory epithelium" EXACT [] xref: FMA:67874 is_a: CL:0002169 ! basal cell of olfactory epithelium [Term] id: CL:0002172 name: interdental cell namespace: cell def: "A long, spindle-shaped supporting cells arranged in parallel rowsthat secretes components of the tectorial membrane and potassium ions into the endolymph." [GOC:tfm, MP:0004482, PMID:2111803] xref: FMA:79797 is_a: CL:0002315 ! supporting cell of cochlea [Term] id: CL:0002173 name: extraglomerular mesangial cell namespace: cell def: "A cell that is a specialized type of pericyte providing structural support for the capillary loops of kidney. A flat, elongated cell with extensive fine cytoplasmic processes found outside the kidney glomerulus near the macula densa and bound laterally by afferent and efferent arterioles. Being phagocytic, this cell participates in the continuous turnover of the basal lamina by removing its outer portion containing residues of filtration, while the lamina is renewed on its inner surface by the endothelial cells." [GOC:tfm, ISBN:0412046911, http:/www.copewithcytokines.de/cope.cgi?key=Lacis%20cells] synonym: "Goormaghtigh cell" EXACT [] synonym: "lacis cell" RELATED [] synonym: "polar cushion cells" EXACT [] xref: FMA:84143 xref: KUPO:0001033 is_a: CL:0000650 ! mesangial cell is_a: CL:0002320 ! connective tissue cell is_a: CL:1000618 ! juxtaglomerular complex cell [Term] id: CL:0002174 name: follicular cell of ovary namespace: cell def: "A cell within the follicle of an ovary." [GOC:tfm] xref: EMAPA:31247 xref: FMA:70589 is_a: CL:0002078 ! meso-epithelial cell [Term] id: CL:0002175 name: primary follicular cell of ovary namespace: cell def: "A cell within the primary follicle of the ovary." [GOC:tfm] xref: FMA:70590 is_a: CL:0002174 ! follicular cell of ovary [Term] id: CL:0002176 name: secondary follicular cell of ovary namespace: cell def: "A cell of a secondary follicile within the ovary." [GOC:tfm] xref: FMA:70591 is_a: CL:0002174 ! follicular cell of ovary [Term] id: CL:0002177 name: folliculostellate cell of pars distalis of adenohypophysis namespace: cell def: "A supporting cell of the anterior pituitary gland involved in trophic and catabolic processes; expresses a broad spectrum of cytokeratins indicative of their epithelial nature." [GOC:tfm] synonym: "folliculostellate cell of pars anterior of adenohypophysis" EXACT [] xref: FMA:83102 is_a: CL:0000642 ! folliculostellate cell is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0002178 name: epithelial cell of stomach namespace: cell alt_id: CL:1000399 def: "An epithelial cell found in the lining of the stomach." [GOC:tfm] xref: FMA:62948 is_a: CL:0002251 ! epithelial cell of alimentary canal [Term] id: CL:0002179 name: foveolar cell of stomach namespace: cell def: "An epithelial cell within one of the pits in the embryonic gastric mucosa from which the gastric glands develop ." [GOC:tfm, http://www.merriam-webster.com/medical/foveolar] xref: FMA:86552 is_a: CL:0002178 ! epithelial cell of stomach [Term] id: CL:0002180 name: mucous cell of stomach namespace: cell alt_id: CL:1000404 def: "A mucous cell in the epithelium of the stomach." [GOC:tfm] xref: FMA:63464 is_a: CL:0002178 ! epithelial cell of stomach is_a: CL:0002659 ! glandular cell of stomach [Term] id: CL:0002181 name: mucus neck cell of gastric gland namespace: cell alt_id: CL:1000401 def: "A neck cell that secretes mucus within the stomach. Its products are distinct histochemically from those of the surface mucous cells of stomach." [GOC:tfm, ISBN:0517223651] xref: FMA:62954 is_a: CL:0000651 ! neck cell is_a: CL:0002180 ! mucous cell of stomach [Term] id: CL:0002182 name: surface mucosal cell of stomach namespace: cell def: "A simple columnar cell that populates the entire luminal surface including the gastric pits. This cell types secrete mucus to form a thick protective, lubricant layer over the gastric wall." [GOC:tfm, ISBN:0517223651] xref: FMA:62949 is_a: CL:0000319 ! mucus secreting cell is_a: CL:0002180 ! mucous cell of stomach [Term] id: CL:0002183 name: stem cell of gastric gland namespace: cell alt_id: CL:1000400 def: "A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit." [GOC:tfm, ISBN:0517223651] xref: FMA:62953 is_a: CL:0000048 ! multi fate stem cell is_a: CL:0002178 ! epithelial cell of stomach [Term] id: CL:0002184 name: basal proper cell of olfactory epithelium namespace: cell def: "A flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells; lie in contact with the basal lamina of olfactory epithelium." [GOC:tfm, PMID:0517223651, PMID:11891623] synonym: "horizontal basal cells" EXACT [] xref: FMA:62304 is_a: CL:0002169 ! basal cell of olfactory epithelium [Term] id: CL:0002187 name: basal cell of epidermis namespace: cell alt_id: CL:1000439 def: "A basally situated, mitotically active, columnar-shaped keratinocyte attached to the basement membrane." [GOC:tfm, ISBN:0517223651] xref: FMA:70571 is_a: CL:0000312 ! keratinocyte is_a: CL:0000646 ! basal cell [Term] id: CL:0002188 name: glomerular endothelial cell namespace: cell def: "An endothelial cell found in the glomerulus of the kidney. This cell is flattened, highly fenestrated, and plays a vital role in the formation of glomerular ultrafiltrate." [GOC:tfm, PMID:15840009] xref: BTO:0004632 xref: FMA:70970 is_a: CL:0000115 ! endothelial cell is_a: CL:0000666 ! fenestrated cell [Term] id: CL:0002189 name: granular cell of epidermis namespace: cell def: "A keratinocyte of the epidermis that is characterized by containing granules of keratohyalin and lamellar granules." [ISBN:1416031855] xref: FMA:70543 is_a: CL:0000312 ! keratinocyte [Term] id: CL:0002190 name: squamous cell of epidermis namespace: cell def: "A flat keratinocyte immediately below the cornified layer." [GOC:tfm, ISBN:0517223651] xref: FMA:86925 is_a: CL:0000312 ! keratinocyte [Term] id: CL:0002191 name: granulocytopoietic cell namespace: cell def: "A cell involved in the formation of a granulocyte." [GOC:tfm] xref: FMA:83519 is_a: CL:0000839 ! myeloid lineage restricted progenitor cell [Term] id: CL:0002192 name: metamyelocyte namespace: cell def: "A eosinophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and a band form cell. The nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare." [GOC:tfm, ISBN:0721601464] xref: FMA:83541 is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0002193 ! myelocyte [Term] id: CL:0002193 name: myelocyte namespace: cell def: "A cell type that is the first of the maturation stages of the granulocytic leukocytes normally found in the bone marrow. Granules are seen in the cytoplasm. The nuclear material of the myelocyte is denser than that of the myeloblast but lacks a definable membrane. The cell is flat and contains increasing numbers of granules as maturation progresses." [GOC:tfm, ISBN:0323052908] xref: BTO:0000734 xref: FMA:83525 is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0000836 ! promyelocyte [Term] id: CL:0002194 name: monopoietic cell namespace: cell def: "A cell involved in the formation of a monocyte (monopoiesis)." [GOC:tfm] xref: FMA:83552 is_a: CL:0000839 ! myeloid lineage restricted progenitor cell [Term] id: CL:0002195 name: hepatic stem cell namespace: cell def: "A stem cell that can give rise to the cells of the liver." [GOC:tfm] xref: FMA:86577 is_a: CL:0000048 ! multi fate stem cell [Term] id: CL:0002196 name: hepatic oval stem cell namespace: cell alt_id: CL:1000036 def: "A transient hepatic stem cell observed after liver injury with a high nuclear to cytoplasm ratio that can differentiate into mature hepatocytes and bile duct cells. Arises from more than one tissue." [PMID:17901986] synonym: "hepatic oval cell" EXACT [] xref: BTO:0004270 xref: FMA:86576 is_a: CL:0002195 ! hepatic stem cell [Term] id: CL:0002197 name: inactive chief cell of parathyoid gland namespace: cell def: "A parathyroid chief cell that is not actively secreting hormone. Contains small Golgi complexes with only a few grouped vesicles and membrane-bound secretory granules; glycogen and many lipofuscin granules abound but sacs of granular endoplasmic reticulum are rare and dispersed. In normal humans, inactive chief cells out number active chief cells in a ratio of 3-5:1." [GOC:tfm, ISBN:0517223651] is_a: CL:0000446 ! chief cell of parathyroid gland [Term] id: CL:0002198 name: oncocyte namespace: cell def: "A large epithelial cell with an extremely acidophilic and granular cytoplasm, containing vast numbers of mitochondria; such cells may undergo neoplastic transformation. From the Greek word onkos meaning swelling, this cell type is found in parathyroid, salivary and thyroid glands." [GOC:tfm, ISBN:0721662544, PMID:20013317] synonym: "oxyphil" EXACT [] xref: FMA:67606 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002199 name: oxyphil cell of parathyroid gland namespace: cell def: "An oncocyte located in the parathyroid gland." [PMID:20013317] xref: FMA:69084 is_a: CL:0002198 ! oncocyte is_a: CL:0002260 ! epithelial cell of parathyroid gland [Term] id: CL:0002200 name: oxyphil cell of thyroid namespace: cell def: "An oncocyte located in the thyroid." [GOC:tfm, PMID:20013317] synonym: "Askanazy cells" EXACT [] synonym: "Hurthle cells" EXACT [] xref: FMA:87169 is_a: CL:0002198 ! oncocyte is_a: CL:0002257 ! epithelial cell of thyroid gland [Term] id: CL:0002201 name: renal beta-intercalated cell namespace: cell def: "A renal intercalated cell that secretes base and reabsorbs acid in the coritcal collecting duct to mantain acid/base balance." [GOC:tfm, PMID:11781354] is_a: CL:0005010 ! renal intercalated cell [Term] id: CL:0002202 name: epithelial cell of tracheobronchial tree namespace: cell alt_id: CL:1000407 def: "An epithelial cell of the tracheobronchial tree." [GOC:tfm] xref: FMA:66816 is_a: CL:0002632 ! epithelial cell of lower respiratory tract [Term] id: CL:0002203 name: Brush cell of epithelium proper of large intestine namespace: cell alt_id: CL:1000387 def: "Brush cell found in the epithelial layer of the colon." [GOC:tfm] comment: Brush cells are a distinct cell type from brush border cell-types. xref: FMA:263222 is_a: CL:0002204 ! brush cell is_a: CL:0002253 ! epithelial cell of large intestine [Term] id: CL:0002204 name: brush cell namespace: cell def: "A cell type found in the gastrointestinal and respiratory tracts that is characterized by the presence of a tuft of blunt, squat microvilli (120-140 per cell). Function of this cell type is not known." [GOC:tfm, ISBN:0517223651, PMID:15817800] synonym: "caveolated cell" EXACT [] synonym: "fibrillovesicular cell" EXACT [] synonym: "multivesicular cell" EXACT [] synonym: "tuft cell" EXACT [] xref: FMA:67978 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002205 name: brush cell of lobular bronchiole namespace: cell alt_id: CL:1000386 def: "A brush cell found in the epithelium of lobular bronchiole." [GOC:tfm] xref: FMA:263220 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002075 ! brush cell of trachebronchial tree [Term] id: CL:0002206 name: brush cell of terminal bronchiole namespace: cell alt_id: CL:1000390 def: "A brush cell of the epithelium in the terminal bronchiole." [GOC:tfm] xref: FMA:263228 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002075 ! brush cell of trachebronchial tree [Term] id: CL:0002207 name: brush cell of trachea namespace: cell alt_id: CL:1000388 def: "Brush cell of the epithelium in the trachea." [GOC:tfm] xref: FMA:263224 is_a: CL:0000307 ! tracheal epithelial cell is_a: CL:0002075 ! brush cell of trachebronchial tree [Term] id: CL:0002208 name: brush cell of bronchus namespace: cell alt_id: CL:1000389 def: "A brush cell found in the epithelium of bronchus." [GOC:tfm] xref: FMA:263226 is_a: CL:0002075 ! brush cell of trachebronchial tree is_a: CL:0002328 ! bronchial epithelial cell [Term] id: CL:0002209 name: intermediate epitheliocyte namespace: cell def: "An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells." [GOC:tfm, ISBN:0517223651] synonym: "undifferentiated columnar cell of tracheobronchial tree" EXACT [] xref: FMA:69060 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree [Term] id: CL:0002210 name: red muscle cell namespace: cell def: "A slow muscle cell that contains high levels of myoglobin and oxygen storing proteins giving the cell a red appearance." [GOC:tfm, ISBN:0517223651] synonym: "oxidative muscle fiber" EXACT [] synonym: "red muscle fiber" EXACT [] xref: FMA:84448 is_a: CL:0002372 ! myotube [Term] id: CL:0002211 name: type I muscle cell namespace: cell def: "A slow muscle cell that has large amounts of myoglobin, stores energy as triglycerides, generates ATP by the oxidative method and is resistant to fatigue." [GOC:tfm, ISBN:0517223651] synonym: "slow twitch fiber" EXACT [] synonym: "slow twitch muscle cell" EXACT [] synonym: "type 1 muscle cell" EXACT [] synonym: "type 1 muscle fiber" EXACT [] synonym: "type I muscle fiber" EXACT [] xref: BTO:0001812 xref: FMA:84413 is_a: CL:0000189 ! slow muscle cell is_a: CL:0002210 ! red muscle cell [Term] id: CL:0002212 name: type II muscle cell namespace: cell def: "A fast muscle fiber cell that stores energy in the form of glycogen and creatine phosphate." [GOC:tfm] synonym: "type 2 muscle cell" EXACT [] synonym: "type 2 muscle fiber" EXACT [] synonym: "type II muscle fiber" EXACT [] xref: BTO:0001813 xref: FMA:84414 is_a: CL:0000190 ! fast muscle cell [Term] id: CL:0002213 name: white muscle cell namespace: cell def: "A muscle cell with low content of myoglobin and other oxygen storing proteins. This muscle cell has a white appearance." [GOC:tfm, ISBN:0517223651] xref: FMA:84449 is_a: CL:0000190 ! fast muscle cell [Term] id: CL:0002214 name: type IIa muscle cell namespace: cell def: "A type II muscle cell that contain large amounts of myoglobin, have many mitochondria and very many blood capillaries. Type II A cells are red, have a very high capacity for generating ATP by oxidative metabolic processes, split ATP at a very rapid rate, have a fast contraction velocity and are resistant to fatigue." [GOC:tfm] synonym: "fast twitch A" EXACT [] synonym: "fatigue resistant fast twitch muscle cell" EXACT [] synonym: "type 2a muscle cell" EXACT [] synonym: "type 2a muscle fiber" EXACT [] synonym: "type IIa muscle fiber" EXACT [] xref: BTO:0001813 xref: FMA:84415 is_a: CL:0002210 ! red muscle cell is_a: CL:0002212 ! type II muscle cell [Term] id: CL:0002215 name: type IIb muscle cell namespace: cell def: "A type II muscle cell that contains a low content of myoglobin, relatively few mitochondria, relatively few blood capillaries and large amounts glycogen. Type II B fibres are white, geared to generate ATP by anaerobic metabolic processes, not able to supply skeletal muscle fibres continuously with sufficient ATP, fatigue easily, split ATP at a fast rate and have a fast contraction velocity." [GOC:tfm, ISBN:0517223651, http://en.wikipedia.org/wiki/Skeletal_muscle] synonym: "type 2b muscle cell" EXACT [] synonym: "type 2b muscle fiber" EXACT [] synonym: "type IIb muscle fiber" EXACT [] xref: FMA:84416 is_a: CL:0002212 ! type II muscle cell is_a: CL:0002213 ! white muscle cell [Term] id: CL:0002216 name: intermediate muscle cell namespace: cell def: "An intermediate muscle cell that has characteristics of both fast and slow muscle cells." [GOC:tfm] xref: FMA:84450 is_a: CL:0002372 ! myotube [Term] id: CL:0002217 name: intermediate trophoblast namespace: cell def: "A trophoblast that leaves the placenta and invades the endometrium and myometrium. This cell type is crucial in increasing blood flow to the fetus." [GOC:tfm, http://www.med.yale.edu/obgyn/kliman/placenta/articles/EOR_Placenta/Trophtoplacenta.html] xref: BTO:0002366 xref: FMA:86564 is_a: CL:0000351 ! trophoblast cell [Term] id: CL:0002218 name: immature dendritic epithelial T cell precursor namespace: cell def: "A double negative thymocyte that has a T cell receptor consisting of a gamma chain that has as part a Vgamma3 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive. This cell-type is found in the fetal thymus with highest numbers occurring at E17-E18." [GOC:tfm, http://www.immgen.org] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "immature DEC precursor" EXACT [] synonym: "immature DETC precursor" EXACT [] is_a: CL:0002404 ! fetal thymocyte [Term] id: CL:0002219 name: anchoring trophoblasts namespace: cell def: "A trophoblast found at the junction of the placenta. This cell type makes a unique fibronectin-trophouteronectin junction that helps mediate attachment of the placenta to the uterus. This cell type is also found junction of the chorion layer of the external membranes and the decidua." [GOC:tfm, http://www.med.yale.edu/obgyn/kliman/placenta/articles/EOR_Placenta/Trophtoplacenta.html] is_a: CL:0000351 ! trophoblast cell [Term] id: CL:0002220 name: interstitial cell of pineal gland namespace: cell def: "A cell located between the pinealocytes." [GOC:tfm, ISBN:0517223651] xref: FMA:86575 is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0002221 name: keratinized squamous cell of esophagus namespace: cell def: "A squamous cell that has keratin in the esophagus." [GOC:tfm, PMID:11694559] xref: FMA:86549 is_a: CL:0000237 ! keratinizing barrier epithelial cell is_a: CL:0002252 ! epithelial cell of esophagus [Term] id: CL:0002222 name: vertebrate lens cell namespace: cell def: "A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [GOC:tfm, ISBN:0721662544] xref: FMA:70950 is_a: CL:0000066 ! epithelial cell is_a: CL:0000306 ! crystallin accumulating cell is_a: CL:0002371 ! somatic cell relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: CL:0002223 name: anterior lens cell namespace: cell def: "A cell of the transparent layer of simple cuboidal epithelium over the anterior surface of the lens; transform into lens fiber(s)." [GOC:tfm, ISBN:0517223651] xref: FMA:63181 is_a: CL:0002224 ! lens epithelial cell [Term] id: CL:0002224 name: lens epithelial cell namespace: cell def: "A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth." [GOC:tfm, ISBN:0721662544, http://en.wikipedia.org/wiki/Lens_%28anatomy%29#Lens_epithelium] xref: FMA:67559 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0002222 ! vertebrate lens cell [Term] id: CL:0002225 name: secondary lens fiber namespace: cell def: "A lens fiber that develops from primary lens fiber; located towards the center of lens; cell organelles are normally degraded or in the process of being degraded." [GOC:tfm, ISBN:0517223651] synonym: "secondary lens fibre" EXACT [] is_a: CL:0002222 ! vertebrate lens cell relationship: develops_from CL:0002228 ! primary lens fiber [Term] id: CL:0002226 name: non-nucleated secondary lens fiber namespace: cell def: "A secondary lens fiber cell that lacks a nucleus." [GOC:tfm] synonym: "non-nucleated secondary lens fibre" EXACT [] xref: FMA:67561 is_a: CL:0002225 ! secondary lens fiber relationship: develops_from CL:0002227 ! nucleated secondary lens fiber [Term] id: CL:0002227 name: nucleated secondary lens fiber namespace: cell def: "A secondary fiber cell that contains a nucleus." [GOC:tfm] synonym: "nucleated secondary lens fibre" EXACT [] xref: FMA:70949 is_a: CL:0002225 ! secondary lens fiber [Term] id: CL:0002228 name: primary lens fiber namespace: cell def: "An elongating cell that rapidly obliterates the lumen of the lens vesicle. Subsequently, differentiation of this cell type at the lens equator leads to the formation of secondary fiber cells that come to overlie the primary fibers." [GOC:tfm, PMID:10711704] synonym: "primary lens fibre" EXACT [] xref: FMA:70613 is_a: CL:0002222 ! vertebrate lens cell relationship: develops_from CL:0002223 ! anterior lens cell [Term] id: CL:0002229 name: light chief cell of parathyroid gland namespace: cell def: "A chief cell that is bigger than dark chief cells and has a larger and lighter nucleus and a cytoplasm with few granules." [GOC:tfm, ISBN:0721662544] xref: FMA:69079 is_a: CL:0000446 ! chief cell of parathyroid gland [Term] id: CL:0002231 name: epithelial cell of prostate namespace: cell alt_id: CL:1000295 alt_id: CL:1000408 def: "An epithelial cell of the prostate." [GOC:tfm] synonym: "prostate epithelial cell" EXACT [] xref: FMA:256163 xref: FMA:66817 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002232 name: epithelial cell of prostatic duct namespace: cell alt_id: CL:1000462 def: "An epithelial cell of prostatic duct." [GOC:tfm] synonym: "ductal epithelial cell of prostate" EXACT [FMA:74224] xref: FMA:74224 is_a: CL:0000072 ! non-branched duct epithelial cell is_a: CL:0002231 ! epithelial cell of prostate [Term] id: CL:0002233 name: epithelial cell of prostatic acinus namespace: cell alt_id: CL:1000461 def: "An epithelial cell of the prostatic acinus." [GOC:tfm, PMCID:PMC2673349] synonym: "acinar epithelial cell of prostate" EXACT [FMA:74223] xref: FMA:74223 is_a: CL:0002231 ! epithelial cell of prostate [Term] id: CL:0002234 name: basal cell of prostatic acinus namespace: cell alt_id: CL:1000464 def: "A cell of the basal layer of the epithelium in the prostatic acinus." [GOC:tfm] synonym: "basal epithelial cell of prostatic acinus" EXACT [FMA:74265] xref: FMA:74265 is_a: CL:0002233 ! epithelial cell of prostatic acinus is_a: CL:0002341 ! basal cell of prostate epithelium [Term] id: CL:0002235 name: luminal cell of prostatic acinus namespace: cell def: "A cell of the luminal layer of the epithelium in the prostatic acinus." [GOC:tfm] xref: FMA:74266 is_a: CL:0002233 ! epithelial cell of prostatic acinus is_a: CL:0002340 ! luminal cell of prostate epithelium [Term] id: CL:0002236 name: basal epithelial cell of prostatic duct namespace: cell alt_id: CL:1000463 def: "A cell that constitutes the basal layer of epithelium in the prostatic duct." [GOC:tfm, PMID:15226377] xref: FMA:74226 is_a: CL:0002232 ! epithelial cell of prostatic duct is_a: CL:0002341 ! basal cell of prostate epithelium [Term] id: CL:0002237 name: luminal epithelial cell of prostatic duct namespace: cell def: "A cell that constitutes the luminal layer of epithelium of prostatic duct." [GOC:tfm] xref: FMA:74225 is_a: CL:0002232 ! epithelial cell of prostatic duct is_a: CL:0002340 ! luminal cell of prostate epithelium [Term] id: CL:0002238 name: male gonocyte namespace: cell def: "A primordial germ cell that is destined to become a male germ cell." [GOC:tfm] synonym: "male primordial germ cell" EXACT [] xref: FMA:84771 is_a: CL:0000670 ! primordial germ cell [Term] id: CL:0002239 name: ooblast namespace: cell def: "A primordial cell from which an oocyte (ovum) ultimately is developed." [GOC:tfm] synonym: "ovigerm" EXACT [] xref: FMA:84772 xref: ISBN:0721662544 is_a: CL:0000670 ! primordial germ cell [Term] id: CL:0002240 name: marrow fibroblast namespace: cell def: "A fibroblast in the bone marrow." [GOC:tfm] xref: FMA:84377 is_a: CL:0000057 ! fibroblast [Term] id: CL:0002241 name: pulmonary interstitial fibroblast namespace: cell def: "A fibroblasts found in interstitial spaces in the pulmonary tract. Greater numbers of these cells are found in idiopathic pulmonary fibrosis." [GOC:tfm] synonym: "pulmonary myofibroblast" EXACT [] synonym: "pulmonary septal cell" EXACT [] xref: FMA:84467 is_a: CL:0000057 ! fibroblast [Term] id: CL:0002242 name: nucleate cell namespace: cell def: "A cell containing at least one nucleus." [GOC:tfm] xref: FMA:67513 is_a: CL:0000224 ! cell by nuclear number [Term] id: CL:0002243 name: smooth muscle cell of sphincter of pupil namespace: cell def: "A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells." [GOC:tfm, ISBN:0721662544, ISBN:0721694128] synonym: "smooth muscle fiber of sphincter of pupil" EXACT [] synonym: "smooth muscle fibre of sphincter of pupil" RELATED [] xref: FMA:70611 is_a: CL:0000358 ! sphincter associated smooth muscle cell relationship: develops_from CL:0000133 ! neurectodermal cell [Term] id: CL:0002244 name: squamous cell of ectocervix namespace: cell def: "A nonstratified squamous cell located in the ectocervix." [GOC:tfm, http://www.bu.edu/histology/p/19404loa.htm] synonym: "ectocervical squamous cell" EXACT [] xref: FMA:86483 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0002149 ! epithelial cell of uterus is_a: CL:0002371 ! somatic cell [Term] id: CL:0002245 name: null lymphocyte namespace: cell def: "A lymphocyte that lacks T or B cell surface markers." [GOC:tfm, ISBN:068340007X] is_obsolete: true xref: FMA:83601 [Term] id: CL:0002246 name: peripheral blood stem cell namespace: cell def: "A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells)." [GOC:tfm] synonym: "PBSC" EXACT [] xref: BTO:0002669 xref: FMA:86711 is_a: CL:0000037 ! hematopoietic stem cell [Term] id: CL:0002247 name: pleural macrophage namespace: cell def: "A tissue macrophage that is in the pleural space." [GOC:tfm] xref: FMA:83024 is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0002248 name: pluripotent stem cell namespace: cell def: "A pluripotent stem cell has the ability to form cells from all three germ layers (ectoderm, mesoderm, and endoderm). However, unlike totipotent stem cells, they cell can not generate all the cells of the whole organism such as placenta." [GOC:tfm, PMID:19343304] xref: FMA:70570 is_a: CL:0000723 ! somatic stem cell [Term] id: CL:0002249 name: primitive cardiac myocyte namespace: cell def: "A stem cell that can differentiate into a cardiac myocyte." [GOC:tfm, PMID:16938308] xref: FMA:75620 is_a: CL:0000035 ! single fate stem cell is_a: CL:0002078 ! meso-epithelial cell [Term] id: CL:0002250 name: intestinal crypt stem cell namespace: cell def: "A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651] synonym: "stem cell of intestinal crypt of lieberkuhn" EXACT [] xref: FMA:63379 is_a: CL:0000048 ! multi fate stem cell is_a: CL:0002563 ! intestinal epithelial cell [Term] id: CL:0002251 name: epithelial cell of alimentary canal namespace: cell def: "An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus." [GOC:tfm, ISBN:0721662544] is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002252 name: epithelial cell of esophagus namespace: cell alt_id: CL:1000402 def: "An epithelial cell of the esophagus." [GOC:tfm] xref: FMA:63071 is_a: CL:0002251 ! epithelial cell of alimentary canal [Term] id: CL:0002253 name: epithelial cell of large intestine namespace: cell alt_id: CL:1000292 def: "An epithelial cell of the large intestine." [GOC:tfm] synonym: "epithelial cell of colon" RELATED [] xref: BTO:0004297 xref: FMA:256157 is_a: CL:0002563 ! intestinal epithelial cell [Term] id: CL:0002254 name: epithelial cell of small intestine namespace: cell alt_id: CL:1000293 def: "An epithelial cell of the small intestine." [GOC:tfm] xref: FMA:256159 is_a: CL:0002563 ! intestinal epithelial cell [Term] id: CL:0002255 name: stromal cell of endometrium namespace: cell def: "An epithelial cell that regulates growth and differentiation of the overlying epithelium." [GOC:tfm, PMID:11331626] xref: FMA:86490 is_a: CL:0000499 ! stromal cell is_a: CL:0002149 ! epithelial cell of uterus [Term] id: CL:0002256 name: supporting cell of carotid body namespace: cell def: "A supportive cell that has characteristics of glial cell. Processes of this cell envelope the junctions between glomus cells and nerve endings." [GOC:tfm, PMID:8985136, http://www.copewithcytokines.de/cope.cgi?key=glomus%20cells] synonym: "carotid body sustentacular cell" EXACT [] xref: FMA:84188 is_a: CL:0000630 ! supportive cell is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0002257 name: epithelial cell of thyroid gland namespace: cell alt_id: CL:1000297 def: "An epithelial cell of thyroid gland." [GOC:tfm] xref: FMA:256167 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002258 name: thyroid follicular cell namespace: cell def: "A cell type that varies from squamous to columnar, depending on their activity with microvillus directed luminally. This cell produces and secretes thyroid hormones." [GOC:tfm, ISBN:0517223651] synonym: "follicular cell of thyroid gland" EXACT [] synonym: "principal cell of thyroid gland" EXACT [] synonym: "thyroid gland follicular cell" EXACT [] xref: BTO:0003736 xref: FMA:68782 is_a: CL:0002257 ! epithelial cell of thyroid gland [Term] id: CL:0002259 name: neuroepithelial stem cell namespace: cell def: "The stem cell from which glial precursor cell arises from." [GOC:tfm, PMID:11687496] synonym: "totipotent neuroepithelial stem cell" NARROW [] xref: FMA:87171 is_a: CL:0000723 ! somatic stem cell [Term] id: CL:0002260 name: epithelial cell of parathyroid gland namespace: cell alt_id: CL:1000429 def: "An epithelial cell of the parathyroid gland." [GOC:tfm] xref: FMA:70547 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002261 name: endothelial cell of viscerocranial mucosa namespace: cell alt_id: CL:1000446 def: "An endothelial cell found in the mucosa associated with the facial skeleton." [GOC:tfm, ISBN:0618947256] xref: FMA:70627 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002262 name: endothelial cell of sinusoid namespace: cell alt_id: CL:1000403 def: "An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver." [GOC:tfm, ISBN:0618947256] xref: FMA:63134 is_a: CL:0000115 ! endothelial cell [Term] id: CL:0002263 name: transitional cell of parathyroid gland namespace: cell def: "One of three types of epithelial cells that populate the parathyroid gland; cytological characteristics intermediate between those of the chief cell and of the oxyphil cell. Because only one hormone is produced, the three cell forms are widely believed to be different phases in the life cycle of a single cell type, with the chief cell being its physiologically active stage." [GOC:tfm, ISBN:0412046911] xref: FMA:69324 is_a: CL:0002260 ! epithelial cell of parathyroid gland [Term] id: CL:0002264 name: type A cell of stomach namespace: cell def: "A type of enteroendocrine cell found in the stomach that secretes glucagon." [GOC:tfm] xref: FMA:83411 is_a: CL:0002067 ! type A enterocrine cell is_a: CL:0002659 ! glandular cell of stomach [Term] id: CL:0002265 name: type D cell of colon namespace: cell def: "A D cell located in the colon." [GOC:tfm] xref: FMA:268744 is_a: CL:0000502 ! type D enteroendocrine cell is_a: CL:0002658 ! glandular cell of the large intestine [Term] id: CL:0002266 name: type D cell of small intestine namespace: cell def: "A type D cell of the small intestine." [GOC:tfm] xref: FMA:268736 is_a: CL:0000502 ! type D enteroendocrine cell is_a: CL:0002254 ! epithelial cell of small intestine [Term] id: CL:0002267 name: type D cell of stomach namespace: cell def: "A type D cell found in the stomach." [GOC:tfm] xref: FMA:83410 is_a: CL:0000502 ! type D enteroendocrine cell is_a: CL:0002659 ! glandular cell of stomach [Term] id: CL:0002268 name: P/D1 enteroendocrine cell namespace: cell def: "An enteroendocrine cell that stores and secretes Ghrelin." [GOC:tfm, ISBN:0517223651, PMID:15153415] xref: FMA:63207 xref: FMA:63418 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell is_a: CL:0002269 ! vasoactive intestinal peptide secreting cell [Term] id: CL:0002269 name: vasoactive intestinal peptide secreting cell namespace: cell def: "An endocrine cell that secretes vasoactive intestinal peptide." [GOC:tfm] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0002270 name: type EC2 enteroendocrine cell namespace: cell def: "A type EC enteroendocrine cell in the duodenum and jejunum that stores and secretes motilin and 5-hydroxytryptamine." [GOC:tfm, ISBN:0517223651, PMID:15153415] synonym: "Mo enteroendocrine cell" BROAD [] xref: FMA:62941 is_a: CL:0000577 ! type EC enteroendocrine cell is_a: CL:0002272 ! motilin secreting cell [Term] id: CL:0002271 name: type EC1 enteroendocrine cell namespace: cell def: "A type EC enteredocrine cell in the intestines that stores and secretes substance P and 5-hydroxytryptamine." [GOC:tfm, ISBN:0517223651] xref: FMA:62940 is_a: CL:0000505 ! substance P secreting cell is_a: CL:0000577 ! type EC enteroendocrine cell [Term] id: CL:0002272 name: motilin secreting cell namespace: cell def: "A cell that secretes motilin, a gastric hormone that at low pH inhibits gastric motor activity, whereas at high pH has a stimulating effect." [GOC:tfm, MESH:D06.472.317.525] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0002273 name: type ECL enteroendocrine cell namespace: cell def: "A type EC enteroendocrine cell type that is numerous in the fundus of the stomach; stores 5-hydroxytryptamine and histamine." [GOC:tfm, ISBN:0517223651, PMID:15153415] xref: FMA:63208 is_a: CL:0000577 ! type EC enteroendocrine cell is_a: CL:0002274 ! histamine secreting cell [Term] id: CL:0002274 name: histamine secreting cell namespace: cell def: "A cell type that secretes histamine." [GOC:tfm] is_a: CL:0000457 ! biogenic amine secreting cell [Term] id: CL:0002275 name: pancreatic PP cell namespace: cell def: "A PP cell located in the islets of the pancreas." [GOC:tfm] comment: The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell. synonym: "PP cell of pancreatic islet" EXACT [] synonym: "PP-cell of pancreatic islet" EXACT [] synonym: "pancreatic polypeptide-secreting cell" EXACT [] xref: BTO:0000805 xref: FMA:70588 is_a: CL:0000696 ! PP cell [Term] id: CL:0002276 name: PP cell of pancreatic acinus namespace: cell def: "A PP cell located in the pancreatic acinus. Obsoleted due to a lack of published evidence that this cell type is actually found in the pancreatic acinus." [GOC:tfm] is_obsolete: true synonym: "type F cell of pancreatic acinus" EXACT [] xref: FMA:85400 [Term] id: CL:0002277 name: type I enteroendocrine cell namespace: cell def: "An enteroendocrine cell commonest in the duodenum and jejunum, rare in ileum, that secretes cholecystokinin. This cell type is involved in the regulation of digestive enzymes and bile." [GOC:tfm] synonym: "CCK cell" EXACT [] xref: FMA:62937 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0002278 name: GIP cell namespace: cell def: "An enteroendocrine cell of duodenum and jejunum that produces gastric inhibitory peptide." [GOC:tfm] synonym: "type K enteroendocrine cell" EXACT [] xref: FMA:62942 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0002279 name: type L enteroendocrine cell namespace: cell def: "A enteroendocrine cell type that is numerous in ileum, present in jejunum and large intestine, few in duodenum. This cell type produces glucagon-like immunoreactants (glicentin, glucagon-37, glucagon-29, GLP-1 and -2) and PYY." [ISBN:0517223651, PMID:15153415] xref: FMA:62944 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0002280 name: type N enteroendocrine cell namespace: cell def: "An enteroendorcine cell found in the ileum and jejunum that produces neurotensin." [GOC:tfm] synonym: "N cell" EXACT [] xref: FMA:62943 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0002281 name: type S enteroendocrine cell namespace: cell def: "Scattered in duodenojejunal mucosa, this enteroendocrine cell secretes secretin and serotonin." [GOC:tfm, PMID:15153415] xref: FMA:62936 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell is_a: CL:0000458 ! serotonin secreting cell [Term] id: CL:0002282 name: type TG enteroendocrine cell namespace: cell def: "An enteroendocrine cell which produces a gastrin- and cholecystokinin-like peptide. The apical microvilli-rich plasma membrane is in open contact with the small intestine mucosa. This cell type is devoid of gastrin-17 but contains other fragments of the gastrin polypeptide." [DOI:10.1007/978-3-211-99390-3, GOC:tfm, PMID:7013499] xref: FMA:63421 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000509 ! gastrin secreting cell [Term] id: CL:0002283 name: ecto-epithelial cell of viscerocranial mucosa namespace: cell alt_id: CL:1000440 def: "An epithelial cell of the mucosa associated with facial skeleton." [GOC:tfm, ISBN:0323052908] xref: FMA:70581 is_a: CL:0002159 ! general ecto-epithelial cell [Term] id: CL:0002284 name: type X enteroendocrine cell namespace: cell def: "An enteroendorcine cell found in the fundus and pylorus, this cell type has dense round secretory granules that contain ghrelin." [GOC:tfm, PMID:20616512] synonym: "A-like" EXACT [] synonym: "X/A-like" EXACT [] xref: FMA:63209 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0005018 ! ghrelin secreting cell [Term] id: CL:0002285 name: type III taste bud cell namespace: cell def: "A taste receptor cell that is characterized by morphologically identifiable synaptic contacts with the gustatory nerve fibers and expression of the synaptic membrane protein-25 (SNAP-25) and NCAM." [GOC:tfm, ISBN:0517223651, PMID:15738192] synonym: "taste bud basal cell" BROAD [] synonym: "type 3 taste cell" EXACT [] xref: FMA:67940 is_a: CL:0000048 ! multi fate stem cell is_a: CL:0000209 ! taste receptor cell [Term] id: CL:0002286 name: type II taste cell namespace: cell def: "A taste receptor cell that has a short microvilli, a projecting apical region, a large rounded nucleus, and expresses taste chemoreceptors thus making them the transducing cell for taste qualities." [GOC:tfm, PMID:15738192] synonym: "type 2 taste cell" EXACT [] xref: FMA:62381 is_a: CL:0000209 ! taste receptor cell [Term] id: CL:0002287 name: type IV taste receptor cell namespace: cell def: "A rounded, mitotically active stem cell which is the source of new cells of the taste bud; located basally." [GOC:tfm, ISBN:0517223651, PMID:15738192] comment: There is debate about the exact lineage of these cell types from this progenitor. See PMID: 15738192. synonym: "taste bud basal cell" BROAD [] synonym: "type 4 taste cell" EXACT [] xref: FMA:62380 is_a: CL:0000209 ! taste receptor cell [Term] id: CL:0002288 name: type V taste receptor cell namespace: cell def: "A cell type that forms the boundary with the surrounding epithelium." [GOC:tfm, ISBN:0517223651] xref: FMA:67941 is_a: CL:0000209 ! taste receptor cell [Term] id: CL:0002289 name: type I taste bud cell namespace: cell def: "A densely staining taste receptor cell that contains many dense vacuoles in their apical regions which project into the apical space and bear microvilli. This cell type serves as a supporting cell by surrounding and isolating the other cell types from each other; secrete a dense amorphous material that surrounds the microvilli in the taste pore. This cell type expresses a glial glutumate transporter, GLAST." [GOC:tfm, ISBN:0412046911, ISBN:0517223651, PMID:15738192] synonym: "dark tongue cell" EXACT [] synonym: "type I taste cell" EXACT [] synonym: "type taste 1 cell" EXACT [] xref: FMA:62356 is_a: CL:0000209 ! taste receptor cell is_a: CL:0000703 ! sustentacular cell [Term] id: CL:0002290 name: Y chromosome-bearing sperm cell namespace: cell def: "A sperm bearing a Y chromosome. Chromosomal and genetic sex is established at fertilization in mammals and depends upon whether an X-bearing sperm or a Y-bearing sperm fertilizes the X-bearing ovum." [GOC:tfm, ISBN:0721669743] synonym: "Y bearing sperm" EXACT [] synonym: "Y-bearing sperm" EXACT [] xref: FMA:84058 is_a: CL:0000019 ! sperm [Term] id: CL:0002291 name: X chromosome-bearing sperm cell namespace: cell def: "A sperm bearing an X chromosome. Chromosomal and genetic sex is established at fertilization in mammals and depends upon whether an X-bearing sperm or a Y-bearing sperm fertilizes the X-bearing ovum." [GOC:tfm, ISBN:0721669743] synonym: "X bearing sperm" EXACT [] synonym: "X-bearing sperm" EXACT [] xref: FMA:84057 is_a: CL:0000019 ! sperm [Term] id: CL:0002292 name: type I cell of carotid body namespace: cell def: "A round or oval neuroepithelial cell that contacts other type I cells or capillaries. They occur in clusters that are surrounded by sheath cells (type-II cells) in the carotid body. This cell type is capable of secreting a number of neurotransmitters." [GOC:tfm, ISBN:0517223651] synonym: "glomus cell" EXACT [] xref: FMA:84186 is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0002293 name: epithelial cell of thymus namespace: cell alt_id: CL:1000459 def: "An epithelial cell of the thymus. Epithelial reticular cells are pleomorphic, stellate, non-phagocytic cells which seem to be supportive in function and are held together by desmosomes. They replace the fibroblastoid reticular cells found in other lymphoid organs. Other epithelial cells in the medulla have the ultrastructure of secretory cells. Although different epithelial cells throughout the thymus appear alike by light microscopy their ultrastructure and function varies." [FMA:72208, GOC:tfm] synonym: "epithelial cell of thymus gland" EXACT [] synonym: "epithelial reticular cell" EXACT [] synonym: "epithelial reticular cell of thymus" EXACT [] synonym: "thymic epithelial cell" EXACT [] xref: FMA:72208 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002294 name: type-1 epithelial cell of thymus namespace: cell def: "An epithelial cell with a well defined Golgi apparatus that makes up the continuous layer of cells bordering the thymic tissue beneath the capsule." [GOC:tfm, PMID:9264335] synonym: "subcapsular thymic epithelial cell" EXACT [] xref: FMA:72209 is_a: CL:0002364 ! cortical thymic epithelial cell [Term] id: CL:0002295 name: type-6 epithelial cell of thymus namespace: cell def: "A thymic epithelial cell that has an eccentric, round, or irregularly shaped hetero or euchromatic nucleus. The hallmark of this cell type is the presence of vacuoles, which are clustered in one area of the cytoplasm in the vicinity of the nucleus. The vacuoles are small and acquire a grape-like form, occasionally showing delicate internal microvillous projections." [GOC:tfm, PMID:19721455, PMID:9264335] synonym: "cystic thymic epithelial cells" EXACT [] synonym: "large mTEC" EXACT [] synonym: "large medullary thymic epithelial cells" EXACT [] xref: FMA:72214 is_a: CL:0002365 ! medullary thymic epithelial cell [Term] id: CL:0002296 name: type-4 epithelial cell of thymus namespace: cell def: "An epithelial cell with high nuclear and cytoplasmic electron-density. This cell type is found in the deeper portions of the cortex but is more abundant in the medulla of the thymus." [FMA:0412046911, GOC:tfm, PMID:9264335] synonym: "dark thymic epithelial cell" EXACT [] xref: FMA:72212 is_a: CL:0002364 ! cortical thymic epithelial cell is_a: CL:0002365 ! medullary thymic epithelial cell [Term] id: CL:0002297 name: type-3 epithelial cell of thymus namespace: cell def: "A thymic epithelial cell with moderate nuclear and cytoplasmic electron-density. Scattered in the cortex, this cell type is predominant in the mid and deep cortex." [PMID:9264335] synonym: "intermediate thymic epithelial cell" EXACT [] xref: FMA:72211 is_a: CL:0002364 ! cortical thymic epithelial cell [Term] id: CL:0002298 name: type-5 epithelial cell of thymus namespace: cell def: "A thymic epithelial cell type with low nuclear and cytoplasmic electrondensity; has a round, euchromatic nucleus and occurs in small groups at the corticomedullary junction or scattered singly in the medulla." [GOC:tfm, ISBN:0412046911, PMID:19721455, PMID:9264335] synonym: "undifferentiated mTEC" EXACT [] synonym: "undifferentiated medullary thymic epithelial cell" EXACT [] synonym: "undifferentiated thymic epithelial cell" EXACT [] xref: FMA:72213 is_a: CL:0002365 ! medullary thymic epithelial cell [Term] id: CL:0002299 name: type-2 epithelial cell of thymus namespace: cell def: "An epithelial cell scattered in the cortex, predominant in the outer cortex with a large pale nucleus and a prominent nucleolus." [GOC:tfm, ISBN:0412046911, PMID:9264335] synonym: "pale thymic epithelial cell" EXACT [] xref: FMA:72210 is_a: CL:0002364 ! cortical thymic epithelial cell [Term] id: CL:0002300 name: type-7 epithelial cell of thymus namespace: cell def: "A small medullary thymic epithelial cell with a spindle shape, often arranged in groups and connected to each other by large desmosomes and interdigitations. The cytoplasm is sparse, with scanty organelles and thick bundles of cytokeratin." [GOC:tfm, PMID:19721455] synonym: "spindle shaped mTEC" EXACT [] synonym: "spindle shaped medullary thymic epithelial cell" EXACT [] is_a: CL:0002365 ! medullary thymic epithelial cell [Term] id: CL:0002301 name: type B synovial cell namespace: cell def: "A synovial cell type that resembles fibroblasts,has abundant granular endoplasmic reticulum but contains fewer vacuoles and vesicles. This cell type secretes glycoproteins and hyaluronic acid." [GOC:tfm, ISBN:0517223651] xref: FMA:66788 is_a: CL:0000214 ! synovial cell [Term] id: CL:0002302 name: type A synovial cell namespace: cell def: "A synovial cell that is macrophage-like, characterized by surface ruffles or lamellipodia, plasma membrane invaginations and associated micropinocytotic vesicles, Golgi apparatus and little granular endoplasmic reticulum." [GOC:tfm, ISBN:0517223651] synonym: "type A synoviocyte" EXACT [] xref: FMA:66787 is_a: CL:0000214 ! synovial cell [Term] id: CL:0002303 name: pigmented ciliary epithelial cell namespace: cell def: "A ciliated epithelial cell of the retina, this cell type uptakes sodium chloride and passes it to non-pigmented ciliary epithelial cells." [PMID:15106942] synonym: "PE" EXACT [] xref: FMA:70606 is_a: CL:0000710 ! neurecto-epithelial cell is_a: CL:0005012 ! multi-ciliated epithelial cell [Term] id: CL:0002304 name: non-pigmented ciliary epithelial cell namespace: cell def: "A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells." [GOC:tfm, PMID:15106942] synonym: "NPE" EXACT [] xref: FMA:70607 is_a: CL:0000710 ! neurecto-epithelial cell is_a: CL:0005012 ! multi-ciliated epithelial cell [Term] id: CL:0002305 name: epithelial cell of distal tubule namespace: cell def: "An epithelial cell of the distal convoluted tubule of the kidney that helps regulate systemic levels of potassium, sodium, calcium, and pH." [GOC:tfm, ISBN:0517223651] synonym: "kidney distal tubule epithelial cell" EXACT [] xref: FMA:62125 xref: FMA:70981 xref: KUPO:0001055 is_a: CL:0002078 ! meso-epithelial cell is_a: CL:1000494 ! epithelial cell of renal tubule is_a: CL:1000615 ! kidney cortex tubule cell relationship: part_of UBERON:0004135 ! distal tubule [Term] id: CL:0002306 name: epithelial cell of proximal tubule namespace: cell def: "An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3] synonym: "kidney proximal tubule epithelial cell" EXACT [] xref: FMA:62125 xref: FMA:70973 xref: KUPO:0001044 is_a: CL:0000239 ! brush border epithelial cell is_a: CL:0002078 ! meso-epithelial cell is_a: CL:1000494 ! epithelial cell of renal tubule relationship: part_of UBERON:0004134 ! proximal tubule [Term] id: CL:0002307 name: brush border cell of the proximal tubule namespace: cell def: "A brush border epithelial cell located in the proximal tubule of the kidney that detects fluid flow." [GOC:tfm, ISBN:1-4160-2328-3] is_a: CL:0000239 ! brush border epithelial cell is_a: CL:0002306 ! epithelial cell of proximal tubule [Term] id: CL:0002308 name: epithelial cell of skin gland namespace: cell def: "An epithelial cell of a skin gland." [GOC:tfm] synonym: "epithelial cell of gland of skin" EXACT [] xref: FMA:70657 is_a: CL:0002159 ! general ecto-epithelial cell [Term] id: CL:0002309 name: corticotroph namespace: cell def: "A basophil chromphil cell of the anterior pitiutary gland that produce adrenocorticotropic hormone, melanocyte-stimulating hormone and lipotropin. This cell type is irregular in shape and has short dendritic processes which are inserted among other neighboring cells;" [GOC:tfm, ISBN:0517223651] xref: BTO:0002509 xref: FMA:83098 is_a: CL:0000467 ! adrenocorticotropic hormone secreting cell is_a: CL:0000639 ! basophil cell of pars distalis of adenohypophysis [Term] id: CL:0002310 name: mammosomatotroph namespace: cell def: "An acidophil cell of the anterior pitiuatry gland that produces both prolactin and growth hormone." [GOC:tfm] xref: FMA:83097 is_a: CL:0000295 ! somatotropin secreting cell is_a: CL:0000439 ! prolactin secreting cell is_a: CL:0000638 ! acidophil cell of pars distalis of adenohypophysis [Term] id: CL:0002311 name: mammotroph namespace: cell def: "An acidophilic cell of the anterior pituitary that produces prolactin." [SANBI:mhl] synonym: "epsilon-acidophil" EXACT [] synonym: "lactotrope" EXACT [] synonym: "lactotroph" EXACT [] synonym: "lactotropic cell" EXACT [] synonym: "mammotrope" EXACT [] synonym: "mammotrophic cell" EXACT [] synonym: "mammotropic cell" EXACT [] xref: FMA:83096 is_a: CL:0000439 ! prolactin secreting cell is_a: CL:0000638 ! acidophil cell of pars distalis of adenohypophysis [Term] id: CL:0002312 name: somatotroph namespace: cell def: "An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin." [SANBI:mhl] synonym: "somatotrope" EXACT [] synonym: "somatotropic cell" EXACT [] synonym: "somatrophic cell" EXACT [] xref: FMA:83095 is_a: CL:0000295 ! somatotropin secreting cell is_a: CL:0000638 ! acidophil cell of pars distalis of adenohypophysis [Term] id: CL:0002313 name: endocrine-paracrine cell of prostate gland namespace: cell def: "An ecto-epithelial cell of the prostate gland that secretes hormones." [GOC:tfm] synonym: "glandular cell of prostate" EXACT [] synonym: "neuro-epithelial cell of prostate gland" EXACT [] xref: FMA:74390 xref: FMA:86774 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0002159 ! general ecto-epithelial cell [Term] id: CL:0002314 name: external supporting cell of vestibular epithelium namespace: cell def: "An auditory epithelial support cell located in the vestibular epithelium that has many hallmarks of glial cells. This cell type express glial markers such as vimentin, S100, glutamate-aspartate transporter, low affinity neurotrophin receptor p75, glial fibrillary acidic protein, and proteolipid protein." [GOC:tfm, PMID:20837532] xref: FMA:75809 is_a: CL:0002316 ! supporting cell of vestibular epithelium [Term] id: CL:0002315 name: supporting cell of cochlea namespace: cell def: "An epithelial supporting cell located in the cochlea." [GOC:tfm] xref: FMA:79796 is_a: CL:0005014 ! auditory epithelial support cell [Term] id: CL:0002316 name: supporting cell of vestibular epithelium namespace: cell def: "A supporting cell of the vestibular epithelium." [GOC:tfm, PMID:20837532] xref: FMA:75607 is_a: CL:0005014 ! auditory epithelial support cell [Term] id: CL:0002317 name: external limiting cell of vestibular epithelium namespace: cell def: "An external limiting cell found in the vestibular epithelium." [GOC:tfm] xref: FMA:75808 is_a: CL:0002316 ! supporting cell of vestibular epithelium [Term] id: CL:0002318 name: periperhal blood mesothelial cell namespace: cell def: "A mesothelial cell capable of circulating in the blood by first losing its squamous character. This cell can incorporate into the regenerating mesothelium." [GOC:tfm, PMID:14592528] xref: FMA:86712 is_a: CL:0000081 ! blood cell relationship: develops_from CL:0000077 ! mesothelial cell [Term] id: CL:0002319 name: neural cell namespace: cell def: "A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256] xref: FMA:70333 is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002320 name: connective tissue cell namespace: cell alt_id: CL:1000406 def: "A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone." [GOC:tfm, ISBN:0618947256] xref: FMA:63875 is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002321 name: embryonic cell namespace: cell def: "A cell of the embryo." [FMA:0618947256] xref: FMA:82840 xref: FMA:82841 xref: WBbt:0007028 is_a: CL:0000548 ! animal cell [Term] id: CL:0002322 name: embryonic stem cell namespace: cell def: "A stem cell of embryonic origin." [GOC:dsd, GOC:tfm, ISBN:068340007X, PMID:18179856] comment: This is an in vitro cell type and may be removed in future releases. These cells are reportedly SSEA-4-positive, CD73-negative, and CD324-positive. synonym: "ESC" EXACT [] xref: BTO:0001086 xref: FMA:82841 is_a: CL:0000034 ! stem cell is_a: CL:0002321 ! embryonic cell [Term] id: CL:0002323 name: amniocyte namespace: cell def: "A cell of aB fetusB which is suspended in the amniotic fluid. Amniocytes are considered to arise from several tissues including fetal skin, the fetal urinary tract, umbilical cord, and the inner amniotic surface." [BFO:0000066, GOC:tfm, PMID:3211847] xref: BTO:0000066 is_a: CL:0000349 ! extraembryonic cell [Term] id: CL:0002324 name: myoepithelial cell of mammary gland namespace: cell def: "A myoepithelial cell that surrounds milk-secreting luminal epithelial cells. This cell type contracts under the stimulation of oxytocin and is attached to the basement membrane by hemidesmosomes and to the adjacent luminal cells by desmosomes. This cell type expresses high level of keratin-14 and is estrogen receptor alpha negative." [GOC:tfm, PMID:11250738, PMID:19022771] is_a: CL:0000185 ! myoepithelial cell is_a: CL:0002327 ! mammary epithelial cell [Term] id: CL:0002325 name: mammary alveolar cell namespace: cell alt_id: CL:0002230 alt_id: CL:1000476 def: "The milk-producing cell of the alveolar unit that emerges during pregnancy." [GOC:tfm, PMID:19022771] synonym: "epithelial cell of lactiferous gland" EXACT [] synonym: "luminal cell of alveolus of lactiferous gland" EXACT [] xref: FMA:74506 xref: FMA:79866 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000314 ! milk secreting cell is_a: CL:0002159 ! general ecto-epithelial cell is_a: CL:0002327 ! mammary epithelial cell [Term] id: CL:0002326 name: luminal epithelial cell of mammary gland namespace: cell def: "A mammary epithelial cell that occurs in the lumen of the ductal and alveoli structure in the breast." [GOC:tfm, PMID:19022771] xref: FMA:73280 is_a: CL:0000069 ! branched duct epithelial cell is_a: CL:0002327 ! mammary epithelial cell [Term] id: CL:0002327 name: mammary epithelial cell namespace: cell def: "An epithelial cell of the mammary gland." [GOC:tfm, PMID:19022771] synonym: "breast epithelial cell" EXACT [] xref: BTO:0004300 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002328 name: bronchial epithelial cell namespace: cell def: "An epithelial cell of the bronchus." [GOC:tfm] xref: BTO:0002922 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002202 ! epithelial cell of tracheobronchial tree relationship: part_of UBERON:0002031 ! epithelium of bronchus [Term] id: CL:0002329 name: basal epithelial cell of tracheobronchial tree namespace: cell def: "An epithelial cell type that lacks the columnar shape typical for other respiratory epithelial cells. This cell type is able to differentiate into other respiratory epithelial cells in response to injury." [GOC:tfm] is_a: CL:0002202 ! epithelial cell of tracheobronchial tree [Term] id: CL:0002330 name: undifferentiated cell of bronchus epithelium namespace: cell def: "An undifferentiated columnar cell of the bronchus epithelium" [GOC:tfm, PMID:18757316] is_a: CL:0002328 ! bronchial epithelial cell [Term] id: CL:0002332 name: ciliated cell of the bronchus namespace: cell def: "A ciliated cell of the bronchus." [GOC:tfm, PMID:18757316] is_a: CL:0002145 ! ciliated columnar cell of tracheobronchial tree is_a: CL:0002328 ! bronchial epithelial cell [Term] id: CL:0002333 name: neural crest derived fat cell namespace: cell def: "A fat cell derived from a neural crest cell." [GOC:tfm, PMID:17507398] is_a: CL:0000136 ! fat cell relationship: develops_from CL:0000005 ! fibroblast neural crest derived [Term] id: CL:0002334 name: preadipocyte namespace: cell def: "An undifferentiatedB fibroblastB that can be stimulated to form a fat cell." [GOC:tfm, PMID:18793119] xref: BTO:0001107 is_a: CL:0000057 ! fibroblast [Term] id: CL:0002335 name: brown preadipocyte namespace: cell def: "A preadipocyte that is capable of differentiating into a brown adipocyte. This cell type expresses uncoupling protein-1, PPAR-gamma, PR-domain-containing 16; and PGC-1alpha (peroxisome proliferator-activated receptor-gamma (PPARgamma) coactivator-1alpha)." [GOC:tfm, PMID:18719589] is_a: CL:0002334 ! preadipocyte [Term] id: CL:0002336 name: buccal mucosa cell namespace: cell def: "An endothelial cell that lines the oral cavitiy including the mucosa of the gums, the palate, the lip, and the cheek." [GOC:tfm, MESH:A10.615.550.599] is_a: CL:0002261 ! endothelial cell of viscerocranial mucosa [Term] id: CL:0002337 name: keratinocyte stem cell namespace: cell def: "A stem cell located in the bulge of the hair follicle that can give rise to regenerate the new follicle with each hair cycle and to reepithelialize the epidermis during wound repair." [PMID:15339667] synonym: "bulge keratinocyte" EXACT [] is_a: CL:0000048 ! multi fate stem cell is_a: CL:0000312 ! keratinocyte [Term] id: CL:0002338 name: CD56-positive, CD161-positive immature natural killer cell namespace: cell def: "A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-negative, CD117-positive, CD122-positive,and CD161-positive." [GOC:add, GO_REF:0000031, ISBN:0781735149, PMID:12457618] comment: Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as a representative example (PRO at this time lacks a KIR superfamily). synonym: "p-NK" RELATED [PMID:12457618] is_a: CL:0000823 ! immature natural killer cell relationship: develops_from CL:0002344 ! CD56-negative, CD161-positive immature natural killer cell [Term] id: CL:0002339 name: prostate stem cell namespace: cell def: "A prostate epithelial cell that is CD133-positive, CD44-positive, integrin A2beta3-high. This cell is a stem cell for the prostate epithelium." [GOC:tfm, PMID:15226377] synonym: "CD133-positive prostate epithelial cell" EXACT [] is_a: CL:0000048 ! multi fate stem cell is_a: CL:0002341 ! basal cell of prostate epithelium [Term] id: CL:0002340 name: luminal cell of prostate epithelium namespace: cell def: "The exocrine cell of the prostate, this epithelial cell secretes prostatic acid phosphotase and PSA, and is dependent on androgen hormones for survival." [GOC:tfm] is_a: CL:0002231 ! epithelial cell of prostate [Term] id: CL:0002341 name: basal cell of prostate epithelium namespace: cell def: "An undifferentiated cell of the prostate epithelium that lacks secretory activity." [GOC:tfm, PMCID:PMC2673349] is_a: CL:0002231 ! epithelial cell of prostate [Term] id: CL:0002342 name: circulating endothelial cell namespace: cell def: "A circulating endothelial cell of the phenotype CD146-positive, CD105-positive, CD45-negative. This cell type is indicative of recent vascular damage." [GOC:tfm, PMID:19652886] is_a: CL:0000115 ! endothelial cell [Term] id: CL:0002343 name: decidual natural killer cell namespace: cell def: "A natural killer cell subset that is found in the decidual of the uterus and is CD56-high, Galectin-1-positive and CD16-negative. This cell type represents the most abundant immune cell type in the decidual during the first trimester of pregnancy." [PMID:14568979, PMID:19800965] synonym: "dNK cell" EXACT [] synonym: "decidual NK cell" EXACT [] is_a: CL:0000824 ! mature natural killer cell [Term] id: CL:0002344 name: CD56-negative, CD161-positive immature natural killer cell namespace: cell def: "A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-negative, CD117-positive, CD122-positive,and CD161-positive." [GOC:add, GO_REF:0000031, ISBN:0781735149, PMID:12457618] comment: Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as a representative example (PRO at this time lacks a KIR superfamily). synonym: "p-NK" RELATED [PMID:12457618] is_a: CL:0000823 ! immature natural killer cell [Term] id: CL:0002345 name: CD27-low, CD11b-low immature natural killer cell namespace: cell def: "An immature natural killer cell that is NK1.1-positive, DX5-positive, Ly49-positive, CD27-low and CD11b-low. This cell type is found in high numbers in the liver." [GOC:tfm, PMID:19949422, http:www.immgen.org/index_content.html] comment: Markers are associated with mouse cells. synonym: "preNK.BM" BROAD [] is_a: CL:0000823 ! immature natural killer cell relationship: develops_from CL:0002346 ! Dx5-negative, NK1.1-positive immature natural killer cell [Term] id: CL:0002346 name: Dx5-negative, NK1.1-positive immature natural killer cell namespace: cell def: "An immature natural killer cell that is NK1.1-positive and DX-5 negative." [GOC:tfm, PMID:12766763] is_a: CL:0000823 ! immature natural killer cell [Term] id: CL:0002347 name: CD27-high, CD11b-high natural killer cell namespace: cell def: "A mature natural killer cell that is CD27-high and CD11b-high. This cell type is capable of interferon-gamma secretion." [GOC:tfm, PMID:19949422] is_a: CL:0002426 ! CD11b-positive, CD27-positive natural killer cell relationship: develops_from CL:0002349 ! CD27-high, CD11b-low natural killer cell [Term] id: CL:0002348 name: CD27-low, CD11b-high natural killer cell namespace: cell def: "A CD27-low, CD11b-high natural killer cell that has a higher threshold of activation due to higher expression of inhibitory receptors." [GOC:tfm, PMID:1994922] is_a: CL:0002426 ! CD11b-positive, CD27-positive natural killer cell relationship: develops_from CL:0002347 ! CD27-high, CD11b-high natural killer cell [Term] id: CL:0002349 name: CD27-high, CD11b-low natural killer cell namespace: cell def: "A natural killer cell that is CD27-high and CD11b-low." [GOC:tfm, PMID:1994922] is_a: CL:0002426 ! CD11b-positive, CD27-positive natural killer cell relationship: develops_from CL:0002345 ! CD27-low, CD11b-low immature natural killer cell [Term] id: CL:0002350 name: endocardial cell namespace: cell alt_id: CL:1000475 def: "An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin." [GOC:tfm, ISSN:0452-3458] synonym: "endocardial endothelial cell" EXACT [] synonym: "endothelial cell of endocardium" EXACT [FMA:75621] xref: FMA:75621 is_a: CL:0000115 ! endothelial cell [Term] id: CL:0002351 name: progenitor cell of endocrine pancreas namespace: cell def: "A multi-fate stem cell that is able to differentiate into the pancreas alpha, beta and delta endocrine cells. This cell type expresses neurogenin-3 andB Isl-1." [GOC:tfm, PMID:20025937, PMID:20217494] synonym: "pancreatic endocrine progenitor" EXACT [] synonym: "pancreatic islet progenitor cell" EXACT [] is_a: CL:0000048 ! multi fate stem cell [Term] id: CL:0002352 name: gestational hematopoietic stem cell namespace: cell def: "A hematopoietic stem cell that exists during embryogenesis." [GOC:tfm, ISBN:978-60327-246-6] is_a: CL:0000037 ! hematopoietic stem cell [Term] id: CL:0002353 name: fetal liver hematopoietic progenitor cell namespace: cell def: "A hematopoietic stem cell that resides in the fetal liver. In mice, this cell type is first observed at E10.5. This cell type is MHC-positive, HSA-positive, AA4.1-positive, CD45-positive, Sca-1 positive, CD150-positive, CD48-negative and CD244-negative." [GOC:tfm, ISBN:978-1-60327-346-6, PMID:16569764] is_a: CL:0002352 ! gestational hematopoietic stem cell [Term] id: CL:0002354 name: yolk sac hematopoietic stem cell namespace: cell def: "A hematopoietic stem found in the yolk sac. In mice, this cell type is Sca-1-negative, CD45-negative, MHC-negative, HSA-positive, AA4.1-positive, CD44-positive." [GOC:tfm, doi:10.1097/MOH.0b013e3282f97ae1] synonym: "hemangioblast precursor" EXACT [] is_a: CL:0002352 ! gestational hematopoietic stem cell [Term] id: CL:0002355 name: primitive red blood cell namespace: cell def: "A large nucleated basophilic erythrocyte found in mammalian embryos. This cell type arises from the blood islands of yolk sacs and expresses different types of hemoglobins (beta-H1, gamma-1 and zeta) than adult erythrocytes. Considered a type of erythroblast as this cell type can enucleate in circulation." [DOI:10.1097/MOH.0b013e3282f97ae1, GOC:tfm, PMID:11495698] synonym: "primitive erythroblast" EXACT [] synonym: "primitive erythrocyte" EXACT [] synonym: "primitive erythroid cell" EXACT [] is_a: CL:0002417 ! primitive erythroid lineage cell relationship: develops_from CL:0002361 ! primitive erythroid progenitor [Term] id: CL:0002356 name: primitive reticulocyte namespace: cell def: "A primitive erythrocyte that has undergone enucleation. This cell type is 3-6 fold bigger than the fetal derived erythrocytes that they co-circulate with during fetal development. Expresses epsilon-gamma hemoglobin chains." [GOC:tfm, PMID:11495698, doi:10.1097/MOH.0b013e3282f97ae1] synonym: "megalocyte" EXACT [] is_a: CL:0002417 ! primitive erythroid lineage cell [Term] id: CL:0002357 name: fetal derived definitive erythrocyte namespace: cell def: "A fetal liver derived enucleated erythrocyte. This erythrocyte resembles adult erythrocytes in that they are small (3- to 6- times smaller than primitive erythrocytes) and produce adult hemaglobins." [GOC:tfm, PMID:11495698] synonym: "macrocyte" EXACT [] is_a: CL:0000595 ! enucleate erythrocyte relationship: develops_from CL:0002353 ! fetal liver hematopoietic progenitor cell [Term] id: CL:0002358 name: pyrenocyte namespace: cell def: "Derived from the Greek word pyren (the pit of a stone fruit), this is a transient nucleated cell type that results from exclusion of the nucleus from the primitive erythrocyte." [GOC:tfm] is_a: CL:0002417 ! primitive erythroid lineage cell [Term] id: CL:0002359 name: placental hematopoietic stem cell namespace: cell def: "A hematopoietic stem cell of the placenta. This cell type is first observed E10.5 This cell type may give rise to fetal liver hematopoietic stem cells." [GOC:tfm, ISBN:978-1-60327-346-6] is_a: CL:0002352 ! gestational hematopoietic stem cell [Term] id: CL:0002360 name: AGM hematopoietic stem cell namespace: cell def: "A hematopoietic stem cell from the aorta-gonad-mesonephros region of the developing embryo. First seen at E10.5 in mouse embryos. May give rise to fetal liver HSC." [GOC:tfm, ISBN:978-1-60327-346-6] is_a: CL:0002352 ! gestational hematopoietic stem cell [Term] id: CL:0002361 name: primitive erythroid progenitor namespace: cell def: "A progenitor cell that is capable of forming colonies of primitive erythrocytes in the blood island of the yolk sac. First arrive at E7.5 in mouse and expresses CD41." [GOC:tfm, ISBN:0813817986, PMID:20711979] synonym: "EryP-CFC" EXACT [] synonym: "inner blood island hemangioblast" EXACT [] is_a: CL:0002417 ! primitive erythroid lineage cell relationship: develops_from CL:0002418 ! hemangioblast [Term] id: CL:0002362 name: granule cell precursor namespace: cell def: "A cell located in the outermost proliferative zone of the external germinal layer that can differentiate into astroglial cells and granule cells. This cell type is glial fibrillary acidic protein-positive and NK1-positive." [GOC:tfm, PMID:14745007] is_a: CL:0000337 ! neuroblast (sensu Vertebrata) [Term] id: CL:0002363 name: keratocyte namespace: cell def: "A keratocyte is a specialized fibroblastB residing in the B cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. ThisB cornealB layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate." [GOC:tfm, ISBN:978-0-7020-2958-5] synonym: "corneal fibroblast" EXACT [] synonym: "corneal keratocyte" EXACT [] is_a: CL:0000057 ! fibroblast relationship: develops_from CL:0000008 ! cranial neural crest cell [Term] id: CL:0002364 name: cortical thymic epithelial cell namespace: cell def: "An epithelial cell of the cortical portion of the thymus. Epithelial cells in this region are required for positive selection of CD8-positive T cells." [GOC:tfm, PMID:18403190] synonym: "cTEC" EXACT [] xref: BTO:0004562 is_a: CL:0002293 ! epithelial cell of thymus [Term] id: CL:0002365 name: medullary thymic epithelial cell namespace: cell def: "An epithelial cell of the medullary thymus. This cell type expresses a diverse range of tissue-specific antigens. This promiscuous gene expression is a cell-autonomous property of medullary epithelial cells and is maintained during the entire period of thymic T cell output." [GOC:tfm, PMID:18180458] synonym: "mTEC" EXACT [] xref: BTO:0004563 is_a: CL:0002293 ! epithelial cell of thymus [Term] id: CL:0002366 name: myometrial cell namespace: cell def: "A smooth muscle cell of the myometrium that enlarges and stretches during pregnancy, and contracts in response to oxytocin." [GOC:tfm, PMID:11429640] synonym: "myometrium smooth muscle cell" EXACT [] xref: BTO:0004519 [Term] id: CL:0002367 name: trabecular meshwork cell namespace: cell def: "A cell that lines the trabecular meshwork, which is an area of tissue in theB eyeB located around the base of theB cornea, near theB ciliary body, and is responsible for draining theB aqueous humorB from the eye via theB anterior chamberB (the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." [GOC:tfm, PMID:14500801] synonym: "trabeculocyte" EXACT [] is_a: CL:0000115 ! endothelial cell [Term] id: CL:0002368 name: respiratory epithelial cell namespace: cell def: "An endo-epithelial cell of the respiratory tract." [GOC:tfm] synonym: "airway epithelial cell" EXACT [] xref: BTO:0004533 is_a: CL:0002076 ! endo-epithelial cell [Term] id: CL:0002369 name: fungal spore namespace: cell def: "A differentiated form of a fungus produced during or as a result of an asexual or sexual reproductive process; usually a cell with a thick cell wall that stores and protects one or more nuclei. Spores may be produced in response to, and are characteristically resistant to, adverse environmental conditions." [FAO:0000019, GOC:tfm] is_a: CL:0000521 ! fungal cell [Term] id: CL:0002370 name: respiratory goblet cell namespace: cell def: "A simple columnar epithelial cell that secretes mucin. Rough endoplasmic reticulum, mitochondria, the nucleus, and other organelles are concentrated in the basal portion. The apical plasma membrane projects microvilli to increase surface area for secretion." [GOC:tfm, ISBN:0721662544] is_a: CL:0000160 ! goblet cell is_a: CL:0002202 ! epithelial cell of tracheobronchial tree [Term] id: CL:0002371 name: somatic cell namespace: cell def: "A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)." [GOC:tfm, ISBN:0721662544] xref: BTO:0001268 xref: FMA:72300 xref: WBbt:0008378 is_a: CL:0000144 ! cell by function [Term] id: CL:0002372 name: myotube namespace: cell alt_id: CL:0000369 def: "A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:tfm, ISBN:0323052908] synonym: "myotubule" EXACT [] synonym: "single cell sarcomere" EXACT [] synonym: "skeletal muscle fiber" EXACT [] is_a: CL:0000188 ! skeletal muscle cell is_a: CL:0000228 ! multinucleate cell is_a: CL:0000737 ! striated muscle cell relationship: develops_from CL:0000515 ! skeletal muscle myoblast [Term] id: CL:0002373 name: growth hormone releasing hormone secreting cell namespace: cell def: "A peptide hormone secreting cell that secretes growth hormone releasing hormone." [GOC:dph, GOC:tfm] synonym: "GHRH secreting cell" EXACT [] synonym: "somatocrinin secreting cell" EXACT [] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0002374 name: ear hair cell namespace: cell def: "A hair cell of the ear that contains the organs of balance and hearing." [GOC:dph, GOC:tfm, ISBN:0192801023] synonym: "ear receptor cell" EXACT [] is_a: CL:0000855 ! sensory hair cell [Term] id: CL:0002375 name: Schwann cell precursor namespace: cell def: "A giioblast cell that develops from a migratory neural crest cell. The SCP is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has no basal lamina. In rodents SCPs are the only cells in the Schwann cell linage that expresses Cdh19." [GOC:tfm] synonym: "Schwann cell precursor cell" EXACT [] is_a: CL:0000030 ! glioblast relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0002376 name: non-myelinating Schwann cell namespace: cell def: "A glial cell that ensheaths multiple small diameter axons in the peripheral nervous system. The non-myelinating Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. These cells can de-differentiate into immature Schwann cells." [GOC:cvs, GOC:tfm, ISBN:0721662544] synonym: "Schwann cell" BROAD [] is_a: CL:0002573 ! Schwann cell relationship: develops_from CL:0002377 ! immature Schwann cell [Term] id: CL:0002377 name: immature Schwann cell namespace: cell def: "A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons." [GOC:cvs, GOC:tfm, ISBN:0721662544] synonym: "Schwann cell" BROAD [] xref: ZFA:0001725 is_a: CL:0002573 ! Schwann cell relationship: develops_from CL:0002375 ! Schwann cell precursor [Term] id: CL:0002378 name: immature Vgamma2-positive fetal thymocyte namespace: cell def: "A double negative thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive and is found in the fetal thymus." [GOC:tfm, http://www.immgen.org] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "fetal Vgamma2+ thymocyte" BROAD [] is_a: CL:0002404 ! fetal thymocyte [Term] id: CL:0002379 name: meningothelial cell namespace: cell def: "A neurecto-epithelial cell found in the arachnoid villi of dura mater. This cell type facilitates flow of cerebrospinal fluid into the blood." [GOC:tfm, http://www.aippg.net/forum/viewtopic.php?t=62590] synonym: "arachnoid cap cell" EXACT [] xref: FMA:86588 is_a: CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0002380 name: oospore namespace: cell def: "An asexual spore formed by Oomycetes; formed upon fertilization of an oosphere." [GOC:tfm, ISBN:0851988857, SGD:clt] xref: FAO:0000039 is_a: CL:0000605 ! fungal asexual spore [Term] id: CL:0002381 name: uninucleate conidium namespace: cell def: "A conidium that has only one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000025 is_a: CL:0000599 ! conidium [Term] id: CL:0002382 name: multinucleate conidium namespace: cell def: "A conidium that has more than one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000033 is_a: CL:0000599 ! conidium [Term] id: CL:0002383 name: conidium of conidiophore head namespace: cell def: "A uninucleate spore formed on specialized cells or projections, sterigma, of a conidiophore head." [GOC:tfm, PMID:9529886, SGD:clt] xref: FAO:0000033 is_a: CL:0002381 ! uninucleate conidium [Term] id: CL:0002384 name: uninucleate macroconidium namespace: cell def: "A macroconidium that has only one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000029 is_a: CL:0000606 ! macroconidium is_a: CL:0002381 ! uninucleate conidium [Term] id: CL:0002385 name: blastoconidium namespace: cell def: "An oblong or round asexual spore formed from conidial chains." [GOC:tfm, PMID:2524423, SGD:clt] synonym: "blastospore" RELATED [] xref: BTO:0000127 xref: FAO:0000042 is_a: CL:0000606 ! macroconidium [Term] id: CL:0002386 name: multinucleate macroconidium namespace: cell def: "A macroconidium that has more than one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000035 is_a: CL:0000606 ! macroconidium is_a: CL:0002382 ! multinucleate conidium [Term] id: CL:0002387 name: arthroconidium namespace: cell def: "Cylindrical spore formed by development and compartmentation of hyphae; the hyphae are often supporting blastoconidiophores." [GOC:tfm, PMID:2524423, SGD:clt] synonym: "arthrospore" RELATED [] xref: FAO:0000041 is_a: CL:0000606 ! macroconidium [Term] id: CL:0002388 name: multinucleate arthroconidium namespace: cell def: "An arthroconidium that has more than one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000037 is_a: CL:0002386 ! multinucleate macroconidium is_a: CL:0002387 ! arthroconidium [Term] id: CL:0002389 name: uninucleate arthroconidium namespace: cell def: "An arthroconidium that has only one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000031 is_a: CL:0002384 ! uninucleate macroconidium is_a: CL:0002387 ! arthroconidium [Term] id: CL:0002390 name: uninucleate blastconidium namespace: cell def: "A blastoconidium that has only one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000030 is_a: CL:0002384 ! uninucleate macroconidium is_a: CL:0002385 ! blastoconidium [Term] id: CL:0002391 name: multinucleate blastoconidium namespace: cell def: "A blastoconidium that has more than one nucleus." [GOC:tfm, SGD:clt] xref: FAO:0000036 is_a: CL:0002385 ! blastoconidium is_a: CL:0002386 ! multinucleate macroconidium [Term] id: CL:0002392 name: plant spore namespace: cell def: "Obsolete. Use PO:0025017 from Plant Ontology instead. A plant cell that arises through meiosis and develops into a gametophyte." [GOC:tfm, PO:0025017] is_obsolete: true comment: replaced_by: PO:0025017 [Term] id: CL:0002393 name: intermediate monocyte namespace: cell def: "A monocyte that has characteristics of both patrolling and inflammatory monocytes." [GOC:tfm, PMID:20628149, PMID:20870168] is_a: CL:0000576 ! monocyte [Term] id: CL:0002394 name: CD141-positive myeloid dendritic cell namespace: cell def: "A myeloid dendritic cell found in the blood, lymph nodes, tonsil, bone marrow, and spleen that is CD141-positive (BDCA-3), XCR1-positive, and Clec9A-positive. This cell-type can cross-present antigen to CD8-positive T cells and can produce inteferon-beta." [GOC:dsd, GOC:tfm, PMCID:PMC2882828, PMCID:PMC2882837, PMID:17332250, PMID:20628149] comment: Markers are found in human cells. Normally they represent 3-5% of peripheral blood mDCs (human). These cells express high levels of CD283 (TLR3), are capable of producing IL-12p70 and IFN-beta upon stimulation, and inducing a TH1 response [PMCID:PMC2882828]. They are also Necl2-positive. May be human equivalent of murine CD8alpha-positive DCs. is_a: CL:0000782 ! myeloid dendritic cell [Term] id: CL:0002395 name: Gr1-high classical monocyte namespace: cell def: "A resident monocyte that is Gr-1 high, CD43-negative, CX3CR1-negative, CD115-positive, and B220-negative." [GOC:tfm, PMID:20628149, PMID:8890901, http://www.immgen.org/index_content.html] comment: Markers are associated with mice. The Gr epitope is used to describe this cell type is found on both Ly6c and Ly6g. However, its the Ly6c that is considered the specific marker, and thus used in the cross-product. is_a: CL:0000860 ! classical monocyte [Term] id: CL:0002396 name: CD14-low, CD16-positive monocyte namespace: cell def: "A patrolling monocyte that is CD14-low and CD16-positive." [GOC:tfm, PMID:20870168] comment: Markers are associated with human monocytes. is_a: CL:0000875 ! non-classical monocyte relationship: develops_from CL:0002397 ! CD14-positive, CD16-positive monocyte [Term] id: CL:0002397 name: CD14-positive, CD16-positive monocyte namespace: cell def: "An intermediate monocyte that is CD14-positive, CD16-positive." [GOC:tfm, PMID:20628149] comment: Markers are associated with human cells. is_a: CL:0002393 ! intermediate monocyte relationship: develops_from CL:0002057 ! CD14-positive, CD16-negative classical monocyte [Term] id: CL:0002398 name: Gr1-positive, CD43-positive monocyte namespace: cell def: "An intermediate monocyte that is Gr1-positive, CD43-positive." [GOC:tfm, PMID:20628149] is_a: CL:0002393 ! intermediate monocyte relationship: develops_from CL:0002395 ! Gr1-high classical monocyte [Term] id: CL:0002399 name: CD1c-positive myeloid dendritic cell namespace: cell def: "A myeloid dendritic cell found in the blood that is CD1c-positive." [GOC:dsd, GOC:tfm, PMID:20204387, PMID:20628149] comment: Normally represent 10-20% of peripheral blood mDCs (human). They are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD285-positive (TLR5), CD286-positive (TLR6), CD288-positive (TLR8), and CD290-positive (TLR10) [PMID:20204387]. Upon TLR stimulation, these cells were potent producers of CXCL8 (IL-8), while producing little TNF-alpha. is_a: CL:0000782 ! myeloid dendritic cell [Term] id: CL:0002400 name: Fraction B/C precursor B cell namespace: cell def: "A precursor B cell that is AA4-positive, IgM-negative, CD19-positive, CD43-positive and HSA-positive." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000817 ! precursor B cell [Term] id: CL:0002401 name: mature dendritic epithelial T cell precursor namespace: cell def: "A thymocyte that has a T cell receptor consisting of a gamma chain that has as part a Vgamma3 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus with highest numbers occurring at E17-E18." [GOC:tfm, http://www.immgen.org/index_content.html] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "mature DEC precursor" EXACT [] synonym: "mature DETC precursor" EXACT [] is_a: CL:0002404 ! fetal thymocyte relationship: develops_from CL:0002218 ! immature dendritic epithelial T cell precursor [Term] id: CL:0002402 name: Peyer's patch B cell namespace: cell def: "A resting mature B cell within the Peyer's patch that is CD19-positive, B220-positive, IgM-positive, AA4-negative, CD23-positive, CD43-negative, and CD5-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Peyers patch B cell" EXACT [] is_a: CL:0000785 ! mature B cell [Term] id: CL:0002403 name: mature Vgamma2-positive fetal thymocyte namespace: cell def: "A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus." [GOC:tfm, http://www.immgen.org/index_content.html] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "fetal Vgamma2-positive" EXACT [] is_a: CL:0002404 ! fetal thymocyte relationship: develops_from CL:0002378 ! immature Vgamma2-positive fetal thymocyte [Term] id: CL:0002404 name: fetal thymocyte namespace: cell def: "A thymocyte found in the fetal thymus." [GOC:tfm] is_a: CL:0000893 ! thymocyte [Term] id: CL:0002405 name: gamma-delta thymocyte namespace: cell def: "A post-natal thymocyte expressing components of the gamma-delta T cell receptor. This cell type is always double-negative (i.e. CD4-negative, CD8-negative)." [GOC:tfm, http://www.immgen.org] synonym: "gammadelta thymocyte" EXACT [] synonym: "gd thymocyte" EXACT [] is_a: CL:0000893 ! thymocyte [Term] id: CL:0002406 name: immature Vgamma2-positive thymocyte namespace: cell def: "A double negative post-natal thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive." [GOC:tfm, http://www.immgen.org] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "Vgamma2-positive thymocyte" BROAD [] is_a: CL:0002405 ! gamma-delta thymocyte [Term] id: CL:0002407 name: mature Vgamma2-positive thymocyte namespace: cell def: "A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus." [GOC:tfm, http://www.immgen.org/index_content.html] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "Vgamma2-positive" EXACT [] is_a: CL:0002405 ! gamma-delta thymocyte relationship: develops_from CL:0002406 ! immature Vgamma2-positive thymocyte [Term] id: CL:0002408 name: immature Vgamma2-negative thymocyte namespace: cell def: "A double negative post-natal thymocyte that has a T cell receptor consisting of a gamma chain containing a Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-positive." [GOC:tfm, http://www.immgen.org] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "Vgamma2-negative thymocyte" BROAD [] is_a: CL:0002405 ! gamma-delta thymocyte [Term] id: CL:0002409 name: mature Vgamma2-negative thymocyte namespace: cell def: "A thymocyte that has a T cell receptor consisting of a gamma chain containing Vgamma2 segment, and a delta chain. This cell type is CD4- negative, CD8-negative and CD24-negative. This cell-type is found in the fetal thymus." [GOC:tfm, http://www.immgen.org/index_content.html] comment: NOTE: currently variable immune gene segments are not represented in the OBO Foundry. Cross-product definitions were not made as a result. Also, there are three different nomenclatures for the variable gamma segments. synonym: "Vgamma2-negative" EXACT [] is_a: CL:0002405 ! gamma-delta thymocyte relationship: develops_from CL:0002408 ! immature Vgamma2-negative thymocyte [Term] id: CL:0002410 name: pancreatic stellate cell namespace: cell def: "A cell that is found in the periacinar space of the exocrine pancreas and in perivascular and periductal regions of the pancreas, and has long cytoplasmic processes that encircle the base of the acinus. Expresses several intermediate filament proteins including vimentin and nestin. Shares many of the characteristics of hepatatic stellate cells, but not stellate cells of the central nervous system. Upon activation, this cell type undergoes morphological and gene expression changes that make the cell suggestive of being a type of myofibroblast." [GOC:mah, GOC:tfm, PMID:17200706] synonym: "PaSC" EXACT [] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002411 name: Vgamma1.1-positive, Vdelta6.3-negative thymocyte namespace: cell def: "A gamma-delta receptor that expresses Vgamma1.1 but does not express Vdelta6.3 chains in the T-cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Vg1.1-positive, Vd6.3-negative T cell" EXACT [] is_a: CL:0002405 ! gamma-delta thymocyte [Term] id: CL:0002412 name: Vgamma1.1-positive, Vdelta6.3-positive thymocyte namespace: cell def: "A gamma-delta receptor that expresses Vgamma1.1-Vdelta6.3 chains in the T-cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Vg1.1+Vd6.3+ T cell" EXACT [] is_a: CL:0002405 ! gamma-delta thymocyte [Term] id: CL:0002413 name: mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte namespace: cell def: "A Vgamma1.1-positive, Vdelta6.3-negative thymocyte that is CD24-negative." [GOC:tfm, http://www.immgen.org] synonym: "mature Vg1.1-positive, Vd6.3-negative T cell" RELATED [] is_a: CL:0002411 ! Vgamma1.1-positive, Vdelta6.3-negative thymocyte [Term] id: CL:0002414 name: immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte namespace: cell def: "A Vgamma1.1-positive, Vdelta6.3-negative thymocyte that is CD24-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "immature Vg1.1-positive, Vd6.3-negative T cell" RELATED [] is_a: CL:0002411 ! Vgamma1.1-positive, Vdelta6.3-negative thymocyte [Term] id: CL:0002415 name: immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte namespace: cell def: "A Vgamma1.1-positive, Vdelta6.3-positive thymocyte that is CD24-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "immature Vg1.1+Vd6.3+ T cell" EXACT [] is_a: CL:0002412 ! Vgamma1.1-positive, Vdelta6.3-positive thymocyte [Term] id: CL:0002416 name: mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte namespace: cell def: "A Vgamma1.1-positive, Vdelta6.3-positive thymocyte that is CD24-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "mature Vg1.1+Vd6.3+ T cell" EXACT [] is_a: CL:0002412 ! Vgamma1.1-positive, Vdelta6.3-positive thymocyte [Term] id: CL:0002417 name: primitive erythroid lineage cell namespace: cell def: "An immature or mature cell of the first erythroid lineage to arise during embryonic development." [GOC:tfm] is_a: CL:0000764 ! erythroid lineage cell [Term] id: CL:0002418 name: hemangioblast namespace: cell def: "A pluripotent cell in the yolk sac that can give rise to mesenchymal cells including erythrocytes and endothelial cells." [GOC:tfm, ISBN:0813817986, PMID:11495698] is_a: CL:0000222 ! mesodermal cell relationship: develops_from CL:0002354 ! yolk sac hematopoietic stem cell relationship: part_of UBERON:0002390 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hematopoietic system [Term] id: CL:0002419 name: mature T cell namespace: cell def: "A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm] synonym: "CD3e-positive T cell" EXACT [] synonym: "CD3epsilon T cell" RELATED [] synonym: "mature T-cell" EXACT [] is_a: CL:0000084 ! T cell [Term] id: CL:0002420 name: immature T cell namespace: cell def: "A T cell that has not completed T cell selection." [GOC:tfm] synonym: "immature T-cell" EXACT [] xref: BTO:0001372 is_a: CL:0000084 ! T cell [Term] id: CL:0002421 name: nucleated reticulocyte namespace: cell def: "A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles." [GOC:tfm, PMID:18182572, PMID:9011180, PMID:9046052] is_a: CL:0000558 ! reticulocyte [Term] id: CL:0002422 name: enucleated reticulocyte namespace: cell def: "A reticulocyte lacking a nucleus and showing a basophilic reticulum under vital staining due to the presence of ribosomes." [GOC:tfm, ISBN:0-12203-052-4, ISBN:0721601464] xref: FMA:66785 is_a: CL:0000558 ! reticulocyte [Term] id: CL:0002423 name: DN2a thymocyte namespace: cell def: "A DN2 thymocyte that is Kit-hi." [GOC:tfm, PMID:20595614] comment: Observed in mice. is_a: CL:0000806 ! DN2 thymocyte [Term] id: CL:0002424 name: DN2b thymocyte namespace: cell def: "A DN2 thymocyte that is Kit-low." [GOC:tfm, PMID:20595614] comment: Observed in mice. is_a: CL:0000806 ! DN2 thymocyte relationship: develops_from CL:0002423 ! DN2a thymocyte [Term] id: CL:0002425 name: early T lineage precursor namespace: cell def: "A pro-T cell that is lin-negative, CD25-negative, CD127-negative, CD44-positive and kit-positive." [GOC:dsd, GOC:tfm, PMID:16551251, http://www.immgen.org/index_content.html] comment: ETPs are reportedly CD1a-negative, CD4-negative, CD7-positive, CD8a-negative, CD8b-negative, CD33-low, CD34-high, CD38-low, CD45RA-positive, and CD45RO-negative. synonym: "ETP" EXACT [] synonym: "preT.ETP.Th" EXACT [] is_a: CL:0000827 ! pro-T cell [Term] id: CL:0002426 name: CD11b-positive, CD27-positive natural killer cell namespace: cell def: "A mature natural killer cell that is CD11b-positive and CD27-positive." [GOC:tfm, http://www.immgen.org/index_content.html] comment: A natural killer cell that is NK1.1-positive, CD11b-positive, and CD27-positive. is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002427 name: resting double-positive thymocyte namespace: cell def: "A double-positive, alpha-beta thymocyte that is small and not proliferating." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.DP.sm.Th" EXACT [] is_a: CL:0000809 ! double-positive, alpha-beta thymocyte [Term] id: CL:0002428 name: double-positive blast namespace: cell def: "A double-positive thymocyte that is large (i.e. has a high forward scatter signal in flow cytometry) and is actively proliferating." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.DPb.Th" EXACT [] synonym: "activated double-positive thymocyte" EXACT [] is_a: CL:0000809 ! double-positive, alpha-beta thymocyte relationship: develops_from CL:0002427 ! resting double-positive thymocyte [Term] id: CL:0002429 name: CD69-positive double-positive thymocyte namespace: cell def: "A double-positive thymocyte that is CD69-positive and has begun positive selection." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.DP69+.Th" EXACT [] is_a: CL:0000809 ! double-positive, alpha-beta thymocyte relationship: develops_from CL:0002428 ! double-positive blast [Term] id: CL:0002430 name: CD4-intermediate, CD8-positive double-positive thymocyte namespace: cell def: "A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.4int8+.Th" EXACT [] is_a: CL:0000809 ! double-positive, alpha-beta thymocyte relationship: develops_from CL:0002429 ! CD69-positive double-positive thymocyte [Term] id: CL:0002431 name: CD4-positive, CD8-intermediate double-positive thymocyte namespace: cell def: "A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.4int8+.th" EXACT [] is_a: CL:0000809 ! double-positive, alpha-beta thymocyte relationship: develops_from CL:0002429 ! CD69-positive double-positive thymocyte [Term] id: CL:0002432 name: CD24-positive, CD4 single-positive thymocyte namespace: cell def: "A CD4-positive, CD8-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html] comment: Described in the immgene database as being CD24-intermediate. synonym: "CD24-positive, CD4 single-positive semimature thymocyte" EXACT [] synonym: "T.4SP24int.Th" EXACT [] is_a: CL:0000810 ! CD4-positive, alpha-beta thymocyte relationship: develops_from CL:0002433 ! CD69-positive, CD4-positive single-positive thymocyte [Term] id: CL:0002433 name: CD69-positive, CD4-positive single-positive thymocyte namespace: cell def: "A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.4SP69+.Th" EXACT [] synonym: "intermediate CD4-single-positive" EXACT [] is_a: CL:0000810 ! CD4-positive, alpha-beta thymocyte relationship: develops_from CL:0002431 ! CD4-positive, CD8-intermediate double-positive thymocyte [Term] id: CL:0002434 name: CD24-positive, CD8 single-positive thymocyte namespace: cell def: "A CD8-positive, CD4-negative thymocyte that is CD24-positive and expresses high levels of the alpha-beta T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html] comment: Described in the immgene database as being CD24-intermediate. synonym: "CD24-positive, CD8 single-positive semimature thymocyte" EXACT [] synonym: "T.8SP24int.Th" EXACT [] is_a: CL:0000811 ! CD8-positive, alpha-beta thymocyte relationship: develops_from CL:0002435 ! CD69-positive, CD8-positive single-positive thymocyte [Term] id: CL:0002435 name: CD69-positive, CD8-positive single-positive thymocyte namespace: cell def: "A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.8SP69+.Th" EXACT [] synonym: "intermediate CD8-single-positive" EXACT [] is_a: CL:0000811 ! CD8-positive, alpha-beta thymocyte relationship: develops_from CL:0002430 ! CD4-intermediate, CD8-positive double-positive thymocyte [Term] id: CL:0002436 name: mature CD4 single-positive thymocyte namespace: cell def: "A mature CD4-positive, CD8-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "T.4SP24-.Th" RELATED [] is_a: CL:0000624 ! CD4-positive, alpha-beta T cell relationship: develops_from CL:0002432 ! CD24-positive, CD4 single-positive thymocyte [Term] id: CL:0002437 name: mature CD8 single-positive thymocyte namespace: cell def: "A mature CD8-positive, CD4-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor." [GOC:tfm, http:www.immgen.org/index_content.html] synonym: "T.8SP24-.Th" EXACT [] is_a: CL:0000625 ! CD8-positive, alpha-beta T cell relationship: develops_from CL:0002434 ! CD24-positive, CD8 single-positive thymocyte [Term] id: CL:0002438 name: NK1.1-positive natural killer cell namespace: cell def: "A mature NK cell that is NK1.1-positive." [GOC:tfm] comment: Note: Nk1.1 expression is restricted to C57BL strains of laboratory mice. synonym: "NK.sp" EXACT [] synonym: "NK1.1-positive NK cell" EXACT [] is_a: CL:0000824 ! mature natural killer cell [Term] id: CL:0002439 name: NKGA2-positive natural killer cell namespace: cell def: "A NK1.1-positive T cell that is NKGA2-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "NK.G2A+.SP" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002440 name: Ly49D-positive natural killer cell namespace: cell def: "A NK1.1-positive T cell that is Ly49D-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "NK.49D+.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002441 name: CD94-positive natural killer cell namespace: cell def: "A NK1.1-positive T cell that is CD94-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "NK.94+.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002442 name: CD94-negative, Ly49CI-negative natural killer cell namespace: cell def: "A NK1.1-positive T cell that is CD94-negative and Ly49Cl-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "CD94- Ly49I-negative NK cell" EXACT [] synonym: "NK.49Cl-94-.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002443 name: Ly49CI-positive natural killer cell namespace: cell def: "A NK1.1-positive T cell that is Ly49Cl-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Ly49I-positive NK cell" EXACT [] synonym: "NK.49Cl+.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002444 name: Ly49H-positive natural killer cell namespace: cell def: "A NK1.1-positive T cell that is Ly49H-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "LyH49H-positive" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002445 name: Ly49D-negative natural killer cell namespace: cell def: "A NK1.1-positive T cell that is Ly49D-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "NK.49D-.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002446 name: Ly49CI-negative natural killer cell namespace: cell def: "A NK1.1-positive T cell that is Ly49Cl-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Ly49I-negative NK cell" EXACT [] synonym: "NK.49Cl-.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002447 name: CD94-negative natural killer cell namespace: cell def: "A NK1.1-positive T cell that is CD94-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "NK.94-.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002448 name: Ly49H-negative natural killer cell namespace: cell def: "A NK1.1-positive T cell that is Ly49H-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "LyH49H-negative" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002449 name: CD94-positive Ly49CI-positive natural killer cell namespace: cell def: "A NK1.1-positive T cell that is CD94-positive and Ly49Cl-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "NK.49Cl+94+.Sp" EXACT [] is_a: CL:0002438 ! NK1.1-positive natural killer cell [Term] id: CL:0002450 name: tether cell namespace: cell def: "A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place." [GOC:cvs, GOC:tfm, PMID:9398434] is_a: CL:0002374 ! ear hair cell [Term] id: CL:0002451 name: mammary stem cell namespace: cell def: "A multi-fate stem cell that is the source of cells for growth of the mammary gland during puberty and gestation. This cell type gives rise to both the luminal and myoepithelial cell types of the gland, and have been shown to have the ability to regenerate the entire organ in mice. This cell type also plays an important role in carcinogenesis of the breast. This cell type is Lin-,CD24-positive, CD29-hi." [GOC:hjd, GOC:tfm, PMID:15987436, PMID:16397499, PMID:17851544] is_a: CL:0000048 ! multi fate stem cell [Term] id: CL:0002453 name: oligodendrocyte precursor cell namespace: cell def: "The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [GOC:tfm, PMID:20142420] is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) relationship: develops_from CL:0000339 ! glioblast (sensu Vertebrata) [Term] id: CL:0002454 name: Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell namespace: cell def: "Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8_alpha-negative and is CD205-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "DC.8-4-11b+" EXACT [] synonym: "spleen double-negative dendritic cell" EXACT [] is_a: CL:0002465 ! CD11b-positive dendritic cell [Term] id: CL:0002455 name: CD8_alpha-negative plasmactyoid dendritic cell namespace: cell def: "A CD11c-low plasmacytoid dendritic cell that is CD8alpha-negative and CD4-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "DC.pDC.8-" EXACT [] is_a: CL:0000989 ! CD11c-low plasmacytoid dendritic cell [Term] id: CL:0002456 name: CD8_alpha-positive plasmactyoid dendritic cell namespace: cell def: "A CD11c-low plasmacytoid dendritic cell that is CD8alpha-positive and CD4-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "DC.pDC.8+" EXACT [] is_a: CL:0000989 ! CD11c-low plasmacytoid dendritic cell [Term] id: CL:0002457 name: epidermal Langerhans cell namespace: cell def: "A Langerhans cell that is in the epidermis and is CD45-positive, MHCII-positive, and CD11b-positive." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000453 ! Langerhans cell [Term] id: CL:0002458 name: langerin-positive dermal dendritic cell namespace: cell def: "A dermal dendritic cell that is langerin-positive, CD103-positive, and CD11b-negative." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0001006 ! dermal dendritic cell [Term] id: CL:0002459 name: langerin-negative dermal dendritic cell namespace: cell def: "A dermal dendritic cell that is langerin-negative, CD103-negative, and CD11b-positive." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0001006 ! dermal dendritic cell [Term] id: CL:0002460 name: CD8alpha-negative thymic conventional dendritic cell namespace: cell def: "A conventional thymic dendritic cell that is CD8alpha-negative." [GOC:tfm, PMID:19273629, http://www.immgen.org/index_content.html] synonym: "DC.8-.Th" EXACT [] is_a: CL:0000941 ! thymic conventional dendritic cell [Term] id: CL:0002461 name: CD103-positive dendritic cell namespace: cell def: "A conventional dendritic cell that is CD103-positive. This cell type is usually found in non-lymphoid tissue." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0002462 name: adipose dendritic cell namespace: cell def: "A F4/80-negative dendritic cell located in adipose tissue." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000990 ! conventional dendritic cell relationship: develops_from CL:0002010 ! pre-conventional dendritic cell [Term] id: CL:0002463 name: SIRPa-positive adipose dendritic cell namespace: cell def: "An adipose dendritic cell that is SIRPa-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "DC.SIRPa+.Ad" EXACT [] is_a: CL:0002462 ! adipose dendritic cell [Term] id: CL:0002464 name: SIRPa-negative adipose dendritic cell namespace: cell def: "An adipose dendritic cell that is SIRPa-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "DC.SIRPa-.Ad" EXACT [] is_a: CL:0002462 ! adipose dendritic cell [Term] id: CL:0002465 name: CD11b-positive dendritic cell namespace: cell def: "A conventional dendritic cell that expresses CD11b (ITGAM)." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000990 ! conventional dendritic cell [Term] id: CL:0002466 name: small intestine serosal dendritic cell namespace: cell def: "A CD11b-positive dendritic cell located in the serosal portion of the small intestine epithelium. This cell type is CD45-positive, MHC-II-positive, CD11c-low, CD103-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "DC.11cloSer.SI" EXACT [] is_a: CL:0002465 ! CD11b-positive dendritic cell [Term] id: CL:0002467 name: Gr1-high myeloid suppressor cell namespace: cell def: "A myeloid suppressor cell that is Gr1-high and CD11c-negative." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "MDS.Gr1hi" EXACT [] is_a: CL:0000889 ! myeloid suppressor cell [Term] id: CL:0002468 name: Gr1-low myeloid suppressor cell namespace: cell def: "A myeloid suppressor cell that is Gr1-low and CD11c-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "MDS.Gr1lo" EXACT [] is_a: CL:0000889 ! myeloid suppressor cell [Term] id: CL:0002469 name: MHC-II-negative classical monocyte namespace: cell def: "Gr1-high monocyte that lacks MHC-II receptor complex." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Mo.6C+II-" EXACT [] is_a: CL:0002395 ! Gr1-high classical monocyte [Term] id: CL:0002470 name: MHC-II-positive classical monocyte namespace: cell def: "Gr1-high monocyte that has a MHC-II receptor complex." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Mo.6c+II" EXACT [] is_a: CL:0002395 ! Gr1-high classical monocyte [Term] id: CL:0002471 name: MHC-II-negative non-classical monocyte namespace: cell def: "Gr1-low non-classical monocyte that lacks expression of a MHC-II complex." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Mo.6C-II-" EXACT [] is_a: CL:0002058 ! Gr1-low non-classical monocyte [Term] id: CL:0002472 name: MHC-II-low non-classical monocyte namespace: cell def: "Gr1-low non-classical monocyte that has low to intermediate expression of the MHC-II complex." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Mo.6C-IIint" EXACT [] is_a: CL:0002058 ! Gr1-low non-classical monocyte [Term] id: CL:0002473 name: MHC-II-high non-classical monocyte namespace: cell def: "Gr1-low non-classical monocyte that has high surface expression of a MHC-II complex." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "Mo.6C-II+" EXACT [] is_a: CL:0002058 ! Gr1-low non-classical monocyte [Term] id: CL:0002474 name: lymphoid MHC-II-negative classical monocyte namespace: cell def: "A MHC-II-negative classical monocyte located in lymphoid tissue that is F4/80-positive, CD11c-negative, and CD11b-high." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0002469 ! MHC-II-negative classical monocyte [Term] id: CL:0002475 name: lymphoid MHC-II-negative non-classical monocyte namespace: cell def: "A MHC-II-negative classical monocyte located in lymphoid tissue that is F4/80-positive, CD11c-intermediate, and CD11b-high." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0002471 ! MHC-II-negative non-classical monocyte [Term] id: CL:0002476 name: bone marrow macrophage namespace: cell def: "A tissue-resident macrophage located in the bone marrow. This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "MF.BM" RELATED [] xref: BTO:0004732 is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0002477 name: adipose macrophage namespace: cell def: "A macrophage located in adipose tissue that is CD45-positive, CD11c-positive, and SIRPa-positive." [GOC:tfm] is_a: CL:0000864 ! tissue-resident macrophage [Term] id: CL:0002478 name: F4/80-negative adipose macrophage namespace: cell def: "An adipose macrophage that does not express F4/80but is MHC-II-positive. This cell typeis autofluorescence under typical flow cyometry conditions." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "MF.Autofl.Ad" EXACT [] is_a: CL:0002477 ! adipose macrophage [Term] id: CL:0002479 name: F4/80-positive adipose macrophage namespace: cell def: "An adipose macrophage that does not express MHC-II but is F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "MF.F480+.Ad" EXACT [] is_a: CL:0002477 ! adipose macrophage [Term] id: CL:0002480 name: nasal mucosa goblet cell namespace: cell def: "A goblet cell located in the nasal epithelium." [GOC:cjm, GOC:tfm] xref: MP:0002262 is_a: CL:0000160 ! goblet cell [Term] id: CL:0002481 name: peritubular myoid cell namespace: cell def: "The flattened smooth myoepithelial cells of mesodermal origin that lie just outside the basal lamina of the seminiferous tubule." [GOC:cjm, GOC:tfm, MP:0006420] is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:0002482 name: dermal melanocyte namespace: cell def: "A melanocyte that produces pigment in the dermis." [GOC:cjm, GOC:tfm, MP:0009386] is_a: CL:0000148 ! melanocyte [Term] id: CL:0002483 name: hair follicle melanocyte namespace: cell def: "A melanocyte that produces pigment within the hair follicle." [GOC:tfm, MP:0004381] is_a: CL:0000148 ! melanocyte [Term] id: CL:0002484 name: epithelial melanocyte namespace: cell def: "A melanocyte that produces pigment in the epithelium." [GOC:tfm, MP:0009388] is_a: CL:0000148 ! melanocyte [Term] id: CL:0002485 name: retinal melanocyte namespace: cell def: "A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium." [GOC:tfm, MP:0010190] is_a: CL:0000148 ! melanocyte [Term] id: CL:0002486 name: strial intermediate cell namespace: cell def: "A melanocyte located between the epithelial marginal cell layer and the mesodermal basal cell layer within the intrastrial space; the predominant cellular component of the electrogenic machinery that generates an endocochlear potential (80-100 mV) ." [GOC:tfm, MP:0000048] is_a: CL:0000148 ! melanocyte is_a: CL:0002491 ! auditory epithelial cell [Term] id: CL:0002487 name: cutaneous/subcutaneous mechanoreceptor cell namespace: cell def: "A neuronal receptor that respond to mechanical pressure or distortion in the skin." [GOC:tfm, MP:0000973] is_a: CL:0000199 ! mechanoreceptor cell [Term] id: CL:0002488 name: trophoblast giant cell namespace: cell def: "A trophoblast cell that has a large volume of cytoplasm, is polyploidy and is usually mononuclear but is also occasionally multi-nucleate. This cell type is important in establishing maternal physiology and remodeling of the vasculature of the placenta." [GOC:tfm, MP:0001714, MP:19876834] synonym: "giant trophoblast cell" EXACT [] is_a: CL:0000351 ! trophoblast cell [Term] id: CL:0002489 name: double negative thymocyte namespace: cell def: "A thymocyte that lacks expression of CD4 and CD8." [GOC:tfm, MP:0002407] synonym: "double negative T cell" BROAD [] is_a: CL:0000893 ! thymocyte [Term] id: CL:0002490 name: organ of Corti supporting cell namespace: cell def: "A supporting cell of the organ of Corti." [GOC:tfm, MP:0004300] is_a: CL:0002315 ! supporting cell of cochlea [Term] id: CL:0002491 name: auditory epithelial cell namespace: cell def: "A specialized cell involved in auditory sensory perception." [GOC:tfm] is_a: CL:0000098 ! sensory epithelial cell [Term] id: CL:0002492 name: strial marginal cell namespace: cell def: "A polarized columnar cell that covesr the lateral surface of the cochlear duct, secretes potassium ions and forms a continuous sheet in contact with the endolymph; marginal cells form extensive interdigitations with the basal and intermediate cells in the normal adult stria." [GOC:tfm, MP:0004366] is_a: CL:0002491 ! auditory epithelial cell [Term] id: CL:0002493 name: strial basal cell namespace: cell def: "A polarized cell that is juxtaposed to fibrocytes in the underlying spiral ligament. This cell type secretes potassium ions derived from fibrocytes through gap junctions." [GOC:tfm, MP:0004365] is_a: CL:0002491 ! auditory epithelial cell [Term] id: CL:0002494 name: cardiocyte namespace: cell def: "A cell located in the heart, including both muscle and non muscle cells." [GOC:tfm] comment: From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart. synonym: "heart cell" EXACT [] xref: BTO:0001539 xref: FMA:83808 xref: FMA:84791 is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002495 name: fetal cardiomyocyte namespace: cell def: "A fetal and neonatal heart cell that undergoes proliferation and is not yet terminally differentiated into a binucleate or a multinucleate cardiac myocyte." [GOC:tfm, MP:0008788] synonym: "embryonic cardiomyocyte" EXACT [] synonym: "neonatal cardiomyocyte" EXACT [] is_a: CL:0000746 ! cardiac muscle cell [Term] id: CL:0002496 name: intraepithelial lymphocyte namespace: cell def: "A T cell that is located in the intestinal epithelium and is capable of a mucosal immune response." [GOC:tfm, MP:0008894] synonym: "IEL" EXACT [] synonym: "intraepithelial T cell" EXACT [] synonym: "intraepithelial T-cell" EXACT [] is_a: CL:0002419 ! mature T cell [Term] id: CL:0002497 name: primary trophoblast giant cell namespace: cell def: "A trophoblast giant cell derived from the mural trophectoderm." [GOC:tfm, PMCID:PMC85124] xref: EMAPA:16066 is_a: CL:0002488 ! trophoblast giant cell [Term] id: CL:0002498 name: secondary trophoblast giant cell namespace: cell def: "A trophoblast giant cell that is derived from ectoplacental cone and, later in gestation, the spongiotrophoblast." [GOC:tfm, PMCID:PMC85124] is_a: CL:0002488 ! trophoblast giant cell [Term] id: CL:0002499 name: spongiotrophoblast cell namespace: cell def: "A trophoblast cell that arises in the junctional zone (basal plate) of the placenta." [GOC:tfm, MP:0008959] is_a: CL:0000351 ! trophoblast cell [Term] id: CL:0002500 name: P enteroendocrine cell namespace: cell def: "A P/D1 enteroendocrine cell that is Grimelius positive and stores bombesin-like polypeptide." [FMA:63418, GOC:tfm] is_a: CL:0002268 ! P/D1 enteroendocrine cell [Term] id: CL:0002501 name: type D1 enteroendocrine cell namespace: cell def: "A P/D1 enteroendocrine cell that is argyrophilic and stores vasoactive intestinal polypeptide." [FMA:63207, GOC:tfm] xref: FMA:63207 is_a: CL:0002268 ! P/D1 enteroendocrine cell [Term] id: CL:0002502 name: type M enteroendocrine cell namespace: cell def: "An enteroendocrine cell of the small intestine that secretes motilin." [GOC:tfm, PMID:15153415] synonym: "Mo enteroendocrine cell" BROAD [] xref: FMA:63420 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0002272 ! motilin secreting cell [Term] id: CL:0002503 name: adventitial cell namespace: cell def: "A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc" [GOC:tfm] xref: BTO:0002441 xref: FMA:84639 is_a: CL:0000630 ! supportive cell is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0002504 name: enteric smooth muscle cell namespace: cell def: "A smooth muscle cell of the intestine." [GOC:tfm] synonym: "intestinal smooth muscle cell" EXACT [] is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0002505 name: liver CD103-negative dendritic cell namespace: cell def: "A CD11b-positive dendritic cell that is CD11b-high, CD45-positive, MHC-II-positive and CD103-negative." [GOC:tfm, http:http://www.immgen.org/index_content.html] synonym: "DC.103-11b+.Lv" EXACT [] is_a: CL:0002454 ! Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell [Term] id: CL:0002506 name: liver CD103-positive dendritic cell namespace: cell def: "A CD11b-positive dendritic cell that is CD11b-low, CD45-positive, MHC-II-high and CD103-positive that is located in the liver." [GOC:tfm, http:http://www.immgen.org/index_content.html] synonym: "DC.103+11b-.Lv" EXACT [] is_a: CL:0002454 ! Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell [Term] id: CL:0002507 name: langerin-positive lymph node dendritic cell namespace: cell def: "A dermal dendritic cell isolated from skin draining lymph nodes that is langerin-positive, MHC-II-positive, and CD4-negative and CD8a-negative." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000990 ! conventional dendritic cell [Term] id: CL:0002508 name: langerin-negative, CD103-negative lymph node dendritic cell namespace: cell def: "A dermal dendritic cell isolated from skin draining lymph nodes that is langerin-negative, MHC-II-positive, and CD4-negative and CD8a-negative." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000990 ! conventional dendritic cell [Term] id: CL:0002509 name: CD103-positive, langerin-positive lymph node dendritic cell namespace: cell def: "A langerin-positive lymph node dendritic cell that is CD103-positive and CD11b-low." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0002507 ! langerin-positive lymph node dendritic cell [Term] id: CL:0002510 name: CD103-negative, langerin-positive lymph node dendritic cell namespace: cell def: "A langerin-positive lymph node dendritic cell that is CD103-negative and CD11b-high." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0002507 ! langerin-positive lymph node dendritic cell [Term] id: CL:0002511 name: CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell namespace: cell def: "A langerin-negative lymph node dendritic cell that is CD103-negative and CD11b-low." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0002508 ! langerin-negative, CD103-negative lymph node dendritic cell [Term] id: CL:0002512 name: CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell namespace: cell def: "A langerin-negative lymph node dendritic cell that is CD103-negative and CD11b-high." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0002508 ! langerin-negative, CD103-negative lymph node dendritic cell [Term] id: CL:0002513 name: Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell namespace: cell def: "A CD8alpha alpha positive gamma-delta intraepithelial T cell that expresses a TCR encoded in part by the Vgamma5 gene segment." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "tgd.vg5+.IEL" EXACT [] is_a: CL:0000802 ! CD8-alpha alpha positive, gamma-delta intraepithelial T cell [Term] id: CL:0002514 name: Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell namespace: cell def: "A CD8alpha alpha positive gamma-delta intraepithelial T cell that does not express a TCR partially encoded by the Vgamma5 gene segment." [GOC:tfm, http://www.immgen.org/index_content.html] synonym: "tgd.vg5-.IEL" EXACT [] is_a: CL:0000802 ! CD8-alpha alpha positive, gamma-delta intraepithelial T cell [Term] id: CL:0002515 name: interrenal norepinephrine type cell namespace: cell def: "An interrenal chromaffin cell found in teleosts that contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane." [GOC:MH, GOC:tfm, PMID:12668625] synonym: "interrenal noradrenaline type cell" EXACT [] synonym: "type n interrenal cell" EXACT [] is_a: CL:0000459 ! norepinephrin secreting cell is_a: CL:0002516 ! interrenal chromaffin cell [Term] id: CL:0002516 name: interrenal chromaffin cell namespace: cell def: "A chromaffin cell interspersed among the interrenal epithelial layer of the anterior kidney of teloest fish." [GOC:MH, GOC:tfm, PMID:12668625] is_a: CL:0000166 ! chromaffin cell [Term] id: CL:0002517 name: interrenal epinephrin secreting cell namespace: cell def: "An interrenal chromaffin cell found in teleosts that contain small, homogeneous electron-lucent granules that are separated from the vesicular membrane by a visible halo." [GOC:MH, GOC:tfm, PMID:12668625] synonym: "interrenal adrenaline secreting cell" RELATED [] synonym: "type a interrenal cell" EXACT [] is_a: CL:0000454 ! epinephrin secreting cell is_a: CL:0002516 ! interrenal chromaffin cell [Term] id: CL:0002518 name: kidney epithelial cell namespace: cell def: "An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ] xref: KUPO:0001019 is_a: CL:1000497 ! kidney cell [Term] id: CL:0002519 name: interrenal epithelial cell namespace: cell def: "The interrenal epithelial kidney cell is an epithelial cell found in the anterior kidney of teleosts fish. This cell type is arranged in layers around the posterior cardinal vein and contains many mitochondria with tubulovesicular cristae. Interrenal chromaffin cells are interspersed among the tissue layer created by this cell type." [GOC:mh, GOC:tfm, PMID:12668625] is_a: CL:0002518 ! kidney epithelial cell [Term] id: CL:0002520 name: nephrocyte namespace: cell def: "An insect excretory cell that regulates haemolymph composition by filtration and filtrate endocytosis." [GOC:tfm, PMID:19783135] xref: BTO:0004597 xref: FMA:83807 is_a: CL:0002522 ! renal filtration cell [Term] id: CL:0002521 name: subcutaneous fat cell namespace: cell def: "A fat cell that is part of subcutaneous adipose tissue." [GOC:tfm] synonym: "subcutaneous adipocyte" EXACT [] is_a: CL:0000136 ! fat cell [Term] id: CL:0002522 name: renal filtration cell namespace: cell def: "A renal filtration cell is a specialized cell of the renal system that filter fluids by charge, size or both." [GOC:tfm] is_a: CL:0000424 ! excretory cell [Term] id: CL:0002523 name: mesonephric glomerular visceral epithelial cell namespace: cell def: "A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the mesonephros" [GOC:tfm] is_a: CL:0000653 ! glomerular visceral epithelial cell [Term] id: CL:0002524 name: disseminated nephrocyte namespace: cell def: "A disseminated nephrocyte is a nephrocyte that filters hemolymph and is found at scattered locations in the fat body or other tissues." [GOC:tfm, PMID:19783135] is_a: CL:0002520 ! nephrocyte [Term] id: CL:0002525 name: metanephric glomerular visceral epithelial cell namespace: cell def: "A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the metanephros." [GOC:tfm] is_a: CL:0000653 ! glomerular visceral epithelial cell [Term] id: CL:0002526 name: CD14-positive dermal dendritic cell namespace: cell def: "A dermal dendritic cell that is CD1a-negative and CD14-positive." [GOC:dsd, PMID:19236899, PMID:20309010] comment: They are also CD11c-positive, CD40-positive, CD85j-positive (ILT-2), CD163-positive, CD205-positive (DEC205), CD207-negative (langerin), CD209-positive (DC-SIGN), CD274-positive (PD-L1), CD324-negative (E-cadherin), Factor XIIIa-positive, LOX-I-positive, CLEC6-positive, Dectin-1-positive, and DCIR-positive. Upon stimulation, these cells are capable of producing IL1-beta, IL6, IL8, IL10, IL12p40, IL19, IL20, IL24, TGF-beta, TNF-alpha, GM-CSF, and MCP1. They reside in the dermis. synonym: "CD14+ dermal DC" EXACT [] is_a: CL:0001006 ! dermal dendritic cell [Term] id: CL:0002527 name: immature CD14-positive dermal dendritic cell namespace: cell def: "An immature CD14-positive dermal dendritic cell is CD80-low, CD86-low, and MHCII-low." [GOC:dsd] is_a: CL:0002526 ! CD14-positive dermal dendritic cell [Term] id: CL:0002528 name: mature CD14-positive dermal dendritic cell namespace: cell def: "A mature CD14-positive dermal dendritic cell is CD80-high, CD86-high, MHCII-high and is CD83-positive." [GOC:dsd] is_a: CL:0002526 ! CD14-positive dermal dendritic cell relationship: develops_from CL:0002527 ! immature CD14-positive dermal dendritic cell [Term] id: CL:0002529 name: CD1a-positive dermal dendritic cell namespace: cell def: "A dermal dendritic cell that is CD1a-positive and CD14-negative." [GOC:dsd, PMID:20309010] comment: Reside in the dermis. They are also CD11c-positive, CD40-positive, CD207-negative (langerin), CD209-negative (DC-SIGN), and CD324-negative (E-cadherin). When activated, they are capable of producing CXCL8 (IL-8) and IL-15. Possibly a precursor of Langerhans cells or equivalent of langerin-positive dermal DCs in the mouse. synonym: "CD1a+ dermal DC" EXACT [] is_a: CL:0001006 ! dermal dendritic cell [Term] id: CL:0002530 name: immature CD1a-positive dermal dendritic cell namespace: cell def: "An immature CD1a-positive dermal dendritic cell is CD80-low, CD86-low, and MHCII-low." [GOC:dsd] is_a: CL:0002529 ! CD1a-positive dermal dendritic cell [Term] id: CL:0002531 name: mature CD1a-positive dermal dendritic cell namespace: cell def: "A mature CD1a-positive dermal dendritic cell is CD80-high, CD83-positive, CD86-high, and MHCII-high." [GOC:dsd] is_a: CL:0002529 ! CD1a-positive dermal dendritic cell relationship: develops_from CL:0002530 ! immature CD1a-positive dermal dendritic cell [Term] id: CL:0002532 name: CD16-positive myeloid dendritic cell namespace: cell def: "A myeloid dendritic cell found in the blood that is CD16-positive." [GOC:dsd, PMID:17332250] comment: Normally represent 65-75% of peripheral blood mDCs (human). They are also CD281-positive (TLR1), CD282-positive (TLR2), CD284-positive (TLR4), CD285-positive (TLR5), CD286-positive (TLR6), CD288-positive (TLR8), CD289-positive (TLR9), and CD290-positive (TLR10) by RT-PCR [PMID:17332250]. Upon TLR stimulation, these cells are potent producers of TNF-alpha, while producing little CXCL8 (IL8). synonym: "CD16+ mDC" EXACT [] synonym: "CD16-mDC" EXACT [] is_a: CL:0000782 ! myeloid dendritic cell [Term] id: CL:0002533 name: immature CD16-positive myeloid dendritic cell namespace: cell def: "An immature CD16-positive myeloid dendritic cell is CD80-low, CD86-low, and MHCII-low." [GOC:dsd] is_a: CL:0002532 ! CD16-positive myeloid dendritic cell [Term] id: CL:0002534 name: mature CD16-positive myeloid dendritic cell namespace: cell def: "A mature CD16-positive myeloid dendritic cell is CD80-high, CD83-positive, CD86-high, and MHCII-high." [GOC:dsd] is_a: CL:0002532 ! CD16-positive myeloid dendritic cell relationship: develops_from CL:0002533 ! immature CD16-positive myeloid dendritic cell [Term] id: CL:0002535 name: epithelial cell of cervix namespace: cell def: "An epithelial cell of the cervix." [GOC:tfm] synonym: "cervical canal epithelial cell" EXACT [GOC:tfm] synonym: "cervical canal of uterus epithelial cell" EXACT [GOC:tfm] synonym: "cervix epithelial cell" EXACT [GOC:tfm] synonym: "cervix of uterus epithelial cell" EXACT [GOC:tfm] synonym: "epithelial cell of cervical canal" EXACT [GOC:tfm] synonym: "epithelial cell of cervical canal of uterus" EXACT [GOC:tfm] synonym: "epithelial cell of cervix of uterus" EXACT [GOC:tfm] synonym: "epithelial cell of neck of uterus" EXACT [GOC:tfm] synonym: "epithelial cell of uterine cervix" EXACT [GOC:tfm] synonym: "neck of uterus epithelial cell" EXACT [GOC:tfm] synonym: "uterine cervix epithelial cell" EXACT [GOC:tfm] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell relationship: part_of UBERON:0004801 ! cervix epithelium [Term] id: CL:0002536 name: amniotic epithelial cell namespace: cell def: "An epithelial cell that is part of the amnion." [GOC:tfm] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002537 name: amnion mesenchymal stem cell namespace: cell def: "A mesenchymal stem cell of the amnion membrane." [GOC:tfm, PMID:20446274, PMID:21339039] synonym: "amniotic membrane stem cell" EXACT [] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0002538 name: intrahepatic bile duct epithelial cell namespace: cell def: "An epithelial cell of the intrahepatic portion of the bile duct." [GOC:tfm] is_a: CL:0000069 ! branched duct epithelial cell [Term] id: CL:0002539 name: aortic smooth muscle cell namespace: cell def: "A smooth muscle cell of the aorta." [GOC:tfm] xref: BTO:0004577 is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002540 name: mesenchymal stem cell of the bone marrow namespace: cell def: "A mesenchymal stem cell that is part of the bone marrow." [GOC:tfm] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0002541 name: chorionic membrane mesenchymal stem cell namespace: cell def: "A mesenchymal stem cell of the chorionic membrane." [GOC:tfm] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0002543 name: vein endothelial cell namespace: cell alt_id: CL:1000393 def: "An endothelial cell that is part of the vein." [GOC:tfm] synonym: "endothelial cell of vein" EXACT [] xref: FMA:62104 xref: KUPO:0001099 is_a: CL:0000071 ! blood vessel endothelial cell [Term] id: CL:0002544 name: aortic endothelial cell namespace: cell def: "An arterial endothelial cell that is part of the aorta endothelium." [GOC:tfm] xref: BTO:0003245 is_a: CL:1000413 ! endothelial cell of artery [Term] id: CL:0002545 name: thoracic aorta endothelial cell namespace: cell def: "An endothelial cell that is part of the thoracic endothelium." [GOC:tfm] is_a: CL:0002544 ! aortic endothelial cell [Term] id: CL:0002546 name: embryonic blood vessel endothelial progenitor cell namespace: cell def: "An endothelial progenitor cell that participates in angiogenesis during development." [GOC:tfm] comment: See CL:0002619. is_a: CL:0000222 ! mesodermal cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002547 name: fibroblast of the aortic adventitia namespace: cell def: "A fibroblast of the aortic adventitia." [GOC:tfm] is_a: CL:1000306 ! fibroblast of tunica adventitia of artery [Term] id: CL:0002548 name: cardiac fibroblast namespace: cell def: "A fibroblast that is part of the heart." [GOC:tfm] is_a: CL:0000057 ! fibroblast is_a: CL:0002494 ! cardiocyte [Term] id: CL:0002549 name: fibroblast of choroid plexus namespace: cell def: "A fibroblast that is part of the choroid plexus." [GOC:tfm] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002550 name: fibroblast of the conjuctiva namespace: cell def: "A fibroblast that is part of the conjuctiva of the eye." [GOC:tfm] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002551 name: fibroblast of dermis namespace: cell is_a: CL:0002620 ! skin fibroblast [Term] id: CL:0002552 name: fibroblast of gingiva namespace: cell is_a: CL:0000057 ! fibroblast [Term] id: CL:0002553 name: fibroblast of lung namespace: cell def: "A fibroblast that is part of lung." [GOC:tfm] xref: BTO:0000764 is_a: CL:0000057 ! fibroblast [Term] id: CL:0002554 name: fibroblast of lymphatic vessel namespace: cell def: "A fibroblast of the lymphatic system." [GOC:tfm] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002555 name: fibroblast of mammary gland namespace: cell def: "A fibroblast that is part of the mammary gland." [GOC:tfm] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002556 name: fibroblast of periodontium namespace: cell def: "A fibroblast of the periodontium." [GOC:tfm] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002557 name: fibroblast of pulmonary artery namespace: cell def: "A fibroblast of pulmonary artery." [GOC:tfm] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002558 name: fibroblast of villous mesenchymal namespace: cell def: "A fibroblast that is part of villous mesenchymal." [GOC:tfm] is_a: CL:0000057 ! fibroblast [Term] id: CL:0002559 name: hair follicle cell namespace: cell def: "An animal cell that is part of a hair follicle." [GOC:tfm] is_a: CL:0002371 ! somatic cell [Term] id: CL:0002560 name: inner root sheath cell namespace: cell def: "An epithelial cell that resides in the inner root sheath of the hair follicle." [GOC:tfm] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell is_a: CL:0002559 ! hair follicle cell [Term] id: CL:0002561 name: outer root sheath cell namespace: cell def: "An epithelial cell that is part of the outer root sheath." [GOC:tfm] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell is_a: CL:0002559 ! hair follicle cell [Term] id: CL:0002562 name: hair germinal matrix cell namespace: cell def: "An epidermal cell that is part of the germinal matrix." [GOC:tfm] synonym: "trichocyte" EXACT [] is_a: CL:0000362 ! epidermal cell [Term] id: CL:0002563 name: intestinal epithelial cell namespace: cell def: "An epithelial cell of the intestine." [GOC:tfm] is_a: CL:0002251 ! epithelial cell of alimentary canal relationship: part_of UBERON:0001277 ! intestinal epithelium [Term] id: CL:0002564 name: nucleus pulposus cell of intervertebral disc namespace: cell def: "A connective tissue cell of the nucleus pulposus cell of intervertebral disc." [GOC:tfm] is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0002565 name: iris pigment epithelial cell namespace: cell def: "A pigment cell located in the epithelium of the iris." [GOC:tfm] is_a: CL:0000066 ! epithelial cell is_a: CL:0000342 ! pigment cell (sensu Vertebrata) [Term] id: CL:0002566 name: dark melanocyte namespace: cell def: "A melanocyte that appears darker due to content or amount of melanin granules." [GOC:tfm] is_a: CL:0000148 ! melanocyte [Term] id: CL:0002567 name: light melanocyte namespace: cell def: "A melanocyte that appears lighter in color." [GOC:tfm] is_a: CL:0000148 ! melanocyte [Term] id: CL:0002568 name: mesenchymal stem cell of Wharton's jelly namespace: cell def: "A mesenchymal stem cell that is part of Wharton's jelly." [GOC:tfm] is_a: CL:0002569 ! mesenchymal stem cell of umbilical cord [Term] id: CL:0002569 name: mesenchymal stem cell of umbilical cord namespace: cell def: "A mesenchymal stem cell of the umbilical cord." [GOC:tfm] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0002570 name: mesenchymal stem cell of adipose namespace: cell def: "A mesenchymal stem cell of adipose tissue." [GOC:tfm] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0002571 name: hepatic mesenchymal stem cell namespace: cell def: "A mesenchymal stem cell of liver." [GOC:tfm] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0002572 name: vertebral mesenchymal stem cell namespace: cell def: "A mesenchymal stem cell of the vertebrae." [GOC:tfm] is_a: CL:0000134 ! mesenchymal cell [Term] id: CL:0002573 name: Schwann cell namespace: cell def: "A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function." [GOC:tfm] xref: BTO:0001220 is_a: CL:0000243 ! glial cell (sensu Vertebrata) [Term] id: CL:0002574 name: stromal cell of pancreas namespace: cell def: "A stromal cell of the pancreas." [GOC:tfm] is_a: CL:0000499 ! stromal cell [Term] id: CL:0002575 name: central nervous system pericyte namespace: cell def: "A pericyte of the central nervous system." [GOC:tfm] is_a: CL:0000669 ! pericyte cell [Term] id: CL:0002576 name: perineural cell namespace: cell def: "A myofibroblast that lies in the connective tissue of the spinal cord that has a distinctly lamellar arrangement." [GO:tfm, http://en.wikipedia.org/wiki/Perineurium] is_a: CL:0000186 ! myofibroblast cell [Term] id: CL:0002577 name: placental epithelial cell namespace: cell def: "An epithelial cell of the placenta." [GOC:tfm] is_a: CL:0000349 ! extraembryonic cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002578 name: mesenteric preadipocyte namespace: cell def: "A preadipocyte found in mesenteric tissue." [GOC:tfm] is_a: CL:0002334 ! preadipocyte [Term] id: CL:0002579 name: omentum preadipocyte namespace: cell is_a: CL:0002334 ! preadipocyte [Term] id: CL:0002580 name: preadipocyte of the breast namespace: cell def: "A preadipocyte that is part of the breast." [GOC:tfm] is_a: CL:0002334 ! preadipocyte [Term] id: CL:0002581 name: perirenal preadipocyte namespace: cell is_a: CL:0002334 ! preadipocyte [Term] id: CL:0002582 name: visceral preadipocyte namespace: cell def: "A preadipocyte that is part of visceral tissue." [GOC:tfm] is_a: CL:0002334 ! preadipocyte [Term] id: CL:0002583 name: subcutaneous preadipocyte namespace: cell def: "A preadipocyte that is part of subcutaneous tissue." [GOC:tfm] is_a: CL:0002334 ! preadipocyte [Term] id: CL:0002584 name: renal cortical epithelial cell namespace: cell def: "An epithelial cell of the kidney cortex." [GOC:tfm] xref: KUPO:0001016 is_a: CL:0002518 ! kidney epithelial cell is_a: CL:0002681 ! kidney cortical cell [Term] id: CL:0002585 name: retinal blood vessel endothelial cell namespace: cell def: "A blood vessel endothelial cell that is part of the retina." [GOC:tfm] is_a: CL:0000071 ! blood vessel endothelial cell [Term] id: CL:0002586 name: retinal pigment epithelial cell namespace: cell def: "An epithelial cell of the retinal pigmented epithelium." [GOC:tfm] xref: BTO:0004910 xref: FMA:75802 is_a: CL:0000066 ! epithelial cell is_a: CL:0000149 ! visual pigment cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002588 name: smooth muscle cell of the umbilical vein namespace: cell def: "A smooth muscle cell of the umbilical vein." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002589 name: smooth muscle cell of the brachiocephalic vasculature namespace: cell def: "A smooth muscle cell of the bachiocephalic vasculature." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002590 name: smooth muscle cell of the brain vasculature namespace: cell def: "A vascular associated smooth muscle cell of the brain vasculature." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002591 name: smooth muscle cell of the pulmonary artery namespace: cell def: "A smooth muscle of the pulmonary artery." [GOC:tfm] xref: BTO:0003336 is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002592 name: smooth muscle cell of the coronary artery namespace: cell def: "A smooth muscle cell of the coronary artery." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002593 name: smooth muscle cell of the internal thoracic artery namespace: cell def: "A smooth muscle of the internal thoracic artery." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002594 name: smooth muscle cell of the umbilical artery namespace: cell def: "A smooth muscle cell of the umbilical artery." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002595 name: smooth muscle cell of the subclavian artery namespace: cell def: "A smooth muscle cell of the subclavian artery." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002596 name: smooth muscle cell of the carotid artery namespace: cell def: "Smooth muscle cell of the carotid artery." [GOC:tfm] is_a: CL:0000359 ! vascular associated smooth muscle cell [Term] id: CL:0002597 name: smooth muscle cell of bladder namespace: cell def: "A smooth muscle cell of the bladder." [GC:tfm] xref: KUPO:0001122 is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0002598 name: bronchial smooth muscle cell namespace: cell xref: BTO:0004402 is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0002599 name: smooth muscle cell of the esophagus namespace: cell def: "A smooth muscle cell of the esophagus." [GOC:tfm] is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0002600 name: smooth muscle cell of trachea namespace: cell def: "A smooth muscle cell of the trachea." [GOC:tfm] is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0002601 name: uterine smooth muscle cell namespace: cell def: "A smooth muscle cell of the uterus." [GOC:tfm] is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:0002602 name: annulus pulposus cell namespace: cell synonym: "anulus pulposus cell" EXACT [] is_a: CL:0002320 ! connective tissue cell [Term] id: CL:0002603 name: astrocyte of the cerebellum namespace: cell def: "An astrocyte of the cerebellum." [GOC:tfm] is_a: CL:0000127 ! astrocyte [Term] id: CL:0002604 name: astrocyte of the hippocampus namespace: cell is_a: CL:0000127 ! astrocyte [Term] id: CL:0002605 name: astrocyte of the cerebral cortex namespace: cell def: "An astrocyte of the cerebral cortex." [GOC:tfm] is_a: CL:0000127 ! astrocyte [Term] id: CL:0002606 name: astrocyte of the spinal cord namespace: cell def: "An astrocyte of the spinal cord." [GOC:tfm] is_a: CL:0000127 ! astrocyte [Term] id: CL:0002607 name: enteric neural crest cell namespace: cell def: "A neural crest cell that is part of the enteric nervous system." [GOC:tfm] is_a: CL:0000333 ! neural crest cell [Term] id: CL:0002608 name: hippocampal neuron namespace: cell def: "A neuron of the hippocampus." [GOC:tfm] is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0002609 name: neuron of cerebral cortex namespace: cell def: "A CNS neuron of the cerebral cortex." [GOC:tfm] synonym: "cortical neuron" EXACT [] xref: BTO:0004102 xref: FMA:84104 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0002610 name: raphe nuclei neuron namespace: cell def: "A neuron of the raphe nuclei." [GOC:tfm] is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0002611 name: neuron of the dorsal spinal cord namespace: cell def: "A CNS neuron of the dorsal spinal cord." [GOC:tfm] is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0002612 name: neuron of the ventral spinal cord namespace: cell def: "A neuron of the ventral spinal cord." [GOC:tfm] is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0002613 name: striatum neuron namespace: cell def: "A neuron of the striatum." [GOC:tfm] is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0002614 name: neuron of the substantia nigra namespace: cell def: "A neuron of the substantia nigra." [GOC:tfm] is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) [Term] id: CL:0002615 name: adipocyte of omentum tissue namespace: cell def: "A fat cell that is part of omentum tissue." [GOC:tfm] synonym: "omental adipocyte" EXACT [] synonym: "omental fat cell" EXACT [] is_a: CL:0000136 ! fat cell [Term] id: CL:0002616 name: perirenal adipocyte cell namespace: cell def: "A fat cell of perirenal fat tissue." [GOC:tfm] synonym: "perirenal fat cell" EXACT [] is_a: CL:0000136 ! fat cell [Term] id: CL:0002617 name: adipocyte of breast namespace: cell def: "A fat cell that is part of the breast." [GOC:tfm] synonym: "fat cell of breast" EXACT [] is_a: CL:0000136 ! fat cell [Term] id: CL:0002618 name: endothelial cell of umbilical vein namespace: cell def: "An endothelial cell of the umbilical vein." [GOC:tfm] xref: BTO:0004296 is_a: CL:0002543 ! vein endothelial cell [Term] id: CL:0002619 name: adult endothelial progenitor cell namespace: cell def: "An adult angioblastic cell released from the bone marrow, capable of blood circulation and participation in angiogenesis by differentiating into blood vessel endothelial cells. Their existence is controversial." [GOC:tfm, PMID:20807818, PMID:9020076] synonym: "EPC" EXACT [] is_a: CL:0000566 ! angioblastic mesenchymal cell [Term] id: CL:0002620 name: skin fibroblast namespace: cell def: "A fibroblast of skin." [GOC:tfm] xref: BTO:0001255 is_a: CL:0000057 ! fibroblast [Term] id: CL:0002621 name: gingival epithelial cell namespace: cell is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002622 name: prostate stromal cell namespace: cell def: "A stromal cell of the prostate." [GOC:tfm] xref: BTO:0003972 is_a: CL:0000499 ! stromal cell [Term] id: CL:0002623 name: acinar cell of salivary gland namespace: cell def: "An acinar cell of salivary gland." [GOC:tfm] is_a: CL:0000622 ! acinar cell [Term] id: CL:0002624 name: paneth cell of the appendix namespace: cell def: "A paneth cell of the appendix." [GOC:tfm] is_a: CL:0000510 ! paneth cell [Term] id: CL:0002625 name: seminiferous tubule epithelial cell namespace: cell def: "A cell of the seminiferous tubule epithelium." [GOC:tfm] is_a: CL:0000077 ! mesothelial cell [Term] id: CL:0002626 name: immature astrocyte namespace: cell def: "An immature astrocyte." [GOC:dsd] synonym: "immature astrocytic glia" EXACT [] is_a: CL:0000127 ! astrocyte [Term] id: CL:0002627 name: mature astrocyte namespace: cell def: "A mature astrocyte that is capable of producing cytokines." [GOC:dsd, PMID:12898703, PMID:8734446] comment: Mature astrocytes are reportedly able to produce aspartate, ATP, BDNF, BMP-2a, BMP-3, CCL2, CCL3, CCL4, CCL5, CCL19, CCL20,CD40L, CNTF, CTGF, CXCL1, CXCL2, CXCL8, edn-1, aFGF, bFGF, G-CSF, glutamate, GM-CSF, IFN-alpha, IFN-beta, IFN-gamma, IGF-1, IL-1alpha, IL-1beta, IL-2, Il-4, IL-6, IL-10, IL-12, LIF, MIP-2, NGF, nitric oxide, NT3, taurine, TGF-beta, TNF-alpha, TNF-beta. synonym: "activated astrocyte" EXACT [] synonym: "mature astrocytic glia" EXACT [] is_a: CL:0000127 ! astrocyte [Term] id: CL:0002628 name: immature microglial cell namespace: cell def: "An immature microglial cell with a ramified morphology." [GOC:dsd, PMID:18396103, PMID:19461673] comment: Immature microglia are reportedly CD34-positive, CD163-negative, MHCI-negative, MHCII-negative. synonym: "immature microglia" EXACT [] synonym: "quiescent microglia" EXACT [PMID:18396103] synonym: "resting microglia" EXACT [PMID:18396103] is_a: CL:0000129 ! microglial cell [Term] id: CL:0002629 name: mature microglial cell namespace: cell def: "A mature microglial cell that has changed shape to an amoeboid morphology and is capable of cytokine production and antigen presentation." [GOC:dsd, PMID:11517395, PMID:14612429, PMID:15246020, PMID:16177057, PMID:18396103, PMID:20021364] comment: Mature microglia are reportedly CCR2-positive, CD4-positive, CD9-positive, CD11a-positive, CD11b-positive, CD11c-positive, CD13-positive, CD16-positive, CDw17-positive, CD18-positive, CD21-positive, CD26-negative, CD32-positive, CD35-positive, CD36-positive, CD40-positive, CD44-positive, CD45-positive, CD53-positive, CD54-positive, CD56-negative, CD58-positive, CD63-positive, CD64-positive, CD66-positive, CD80-positive, CD86-positive, CD87-positive, CD92-positive, CD106-positive, CD107a-positive, CD147-positive, CD155-positive, CD162-positive, CD163-positive, CD171-negative, CD200R-positive, CXCR3-positive, CX3CR1-positive, fibronectin-positive, GD3-positive, GLUT1-positive, GLUT3-negative, GLUT5-positive, MHCI-positive, MHCII-positive, P2X4-positive, RFD7-negative, RGS5-negative, alpha-SMA-negative, vimentin-positive, and vwf-negative. Mature microglia are capable of producing BDNF, CCL3, CCL5, CCL7, CCL8, CCL9, CCL19, CCL20,CD40L, CSF, CXCL1, CXCL2, CXCL4, CXCL5, CXCL8, CXCL9, CXCL10, glutamate, IL-1beta, IL-1ra, IL-3, IL-6, IL-10, IL-12, LT, MMP-2, MMP-9, NGF, nitric oxide, ROS, TGF-beta, TNF-alpha. synonym: "activated microglia" EXACT [PMID:18396103] synonym: "mature microglia" EXACT [] synonym: "reactive microglia" EXACT [PMID:18396103] is_a: CL:0000129 ! microglial cell [Term] id: CL:0002630 name: actinomycete-type spore namespace: cell def: "A spore formed from bacteria in the order Actinomycetales." [GO:0034304, GOC:tfm] is_a: CL:0000520 ! prokaryotic cell [Term] id: CL:0002631 name: epithelial cell of upper respiratory tract namespace: cell is_a: CL:0002368 ! respiratory epithelial cell [Term] id: CL:0002632 name: epithelial cell of lower respiratory tract namespace: cell is_a: CL:0002368 ! respiratory epithelial cell [Term] id: CL:0002633 name: respiratory basal cell namespace: cell def: "A basal cell in the respiratory tract." [GOC:tfm, PMID:20699479] synonym: "airway basal cell" EXACT [] synonym: "airway basal stem cell" EXACT [] is_a: CL:0000646 ! basal cell is_a: CL:0002368 ! respiratory epithelial cell [Term] id: CL:0002634 name: epithelial cell of anal column namespace: cell def: "An epithelial cell of the anal column." [GOC:tfm] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0002635 name: nonkeratinized epithelial cell of anal column namespace: cell def: "A nonkeratinized epithelial cell of the anal canal." [GOC:tfm] xref: FMA:263146 is_a: CL:0002634 ! epithelial cell of anal column [Term] id: CL:0002636 name: nonkeratinized epithelial cell of inferior part of anal canal namespace: cell def: "A nonkeratinized cell epithleial cell of the inferior part of the anal canal." [GOC:tfm] xref: FMA:263144 is_a: CL:0002635 ! nonkeratinized epithelial cell of anal column is_a: CL:1000438 ! epithelial cell of wall of inferior part of anal canal [Term] id: CL:0002637 name: keratinized epithelial cell of the anal canal namespace: cell def: "An epithelial cell of the anal canal that is keratinized. This cell type is found towards the lower, rectal end of the anal canal." [GOC:tfm] is_a: CL:0000237 ! keratinizing barrier epithelial cell is_a: CL:0002634 ! epithelial cell of anal column [Term] id: CL:0002638 name: bronchioalveolar stem cell namespace: cell def: "A respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole. This cell types gives rise to alveolar cell types and Clara cells in response to lung injury. This cell type expresses markers Scgb1a1 and Sftpc." [GOC:tfm, PMID:15960971] synonym: "BASC" EXACT [] synonym: "basal epithelial cell of bronchioalveolar duct junction" EXACT [] is_a: CL:0002633 ! respiratory basal cell [Term] id: CL:0002639 name: amniotic stem cell namespace: cell def: "An amniotic stem cell is a mesenchymalstem cell extracted from amniotic fluid. Amniotic stem cells are able to differentiate into various tissue type such as skin, cartilage, cardiac tissue, nerves, muscle, and bone" [GOC:tfm, PMID:20942606] comment: Not clear to me if amniotic stem cell is a different cell type from amnion mesenchymal stem cells. They are treated as distinct in the literature as isolations methods are different, so I will keep them as separate terms for now. is_a: CL:0000134 ! mesenchymal cell is_a: CL:0002323 ! amniocyte [Term] id: CL:0002640 name: amniotic epithelial stem cell namespace: cell def: "An epithelial fate stem cell derived form the amnion membrane." [GOC:tfm, PMID:20446274] is_a: CL:0000036 ! epithelial fate stem cell [Term] id: CL:0002641 name: epithelial cell of esophageal gland proper namespace: cell def: "An epithelial cell of the esophageal gland proper." [GOC:tfm] xref: FMA:256141 is_a: CL:0002657 ! glandular cell of esophagus [Term] id: CL:0002642 name: epithelial cell of esophageal cardiac gland namespace: cell def: "An epithelial cell of the esophageal cardiac gland that occurs both in the proximal and distal esophagusm, within the lamina propia." [GOC:tfm, http://web.mac.com/wjkrause/iWeb/Histology/Blog/E3FA5916-1AA9-4885-B579-5051838D98CB.html] xref: FMA:256143 is_a: CL:0002657 ! glandular cell of esophagus [Term] id: CL:0002643 name: nonkeratinized cell of stratum corneum of esophageal epithelium namespace: cell def: "An epithelial cell of stratum corneum of esophageal epithelium that lacks keratin." [GOC:tfm] xref: FMA:263148 is_a: CL:0002654 ! epithelial cell of stratum corneum of esophageal epithelium [Term] id: CL:0002644 name: endo-epithelial cell of tympanic part of viscerocranial mucosa namespace: cell def: "An endothelial cell of viscerocranial mucosa that is part of the tympanic region of the viscerocranial mucosa." [GOC:tfm] xref: FMA:70628 is_a: CL:0002261 ! endothelial cell of viscerocranial mucosa [Term] id: CL:0002645 name: endo-epithelial cell of pharyngotympanic part of viscerocranial mucosa namespace: cell def: "An endocranial viscerocranial mucosa cell that is part of viscerocranial mucosa." [GOC:tfm] xref: FMA:70629 is_a: CL:0002261 ! endothelial cell of viscerocranial mucosa [Term] id: CL:0002646 name: epithelial cell of buccal part of viscerocranial mucosa namespace: cell def: "An ecto-epithelial cell of the buccal region of the viscerocranial mucosa." [GOC:tfm] xref: FMA:70577 is_a: CL:0002283 ! ecto-epithelial cell of viscerocranial mucosa [Term] id: CL:0002647 name: epithelial cell of anterior palatal part of viscerocranial mucosa namespace: cell def: "An ecto-epithelial cell of the palatal region of the viscerocranial mucosa." [GOC:tfm] xref: FMA:70580 is_a: CL:0002283 ! ecto-epithelial cell of viscerocranial mucosa [Term] id: CL:0002648 name: epithelial cell of nasal part of viscerocranial mucosa namespace: cell def: "An ecto-epithelial cell of the nasal region of the viscerocranial mucosa." [GOC:tfm] xref: FMA:70554 is_a: CL:0002283 ! ecto-epithelial cell of viscerocranial mucosa [Term] id: CL:0002649 name: epithelial cell of gingival part of viscerocranial mucosa namespace: cell def: "An ecto-epithelial cell of the gingival region of the viscerocranial mucosa." [GOC:tfm] xref: FMA:70579 is_a: CL:0002283 ! ecto-epithelial cell of viscerocranial mucosa [Term] id: CL:0002650 name: epithelial cell of paranasal sinus part of viscerocranial mucosa namespace: cell def: "An ecto-epithelial cell of the paranasal region of the viscerocranial mucosa." [GOC:tfm] xref: FMA:70578 is_a: CL:0002283 ! ecto-epithelial cell of viscerocranial mucosa [Term] id: CL:0002651 name: endothelial cell of venous sinus of spleen namespace: cell def: "An endothelial cell that is part of the venous sinus of spleen. This endothelial cell has an elongated, spindle-shaped, flattened morphology that is parallel to long axis of sinus. This cell type rests on a basement membrane interrupted by numerous narrow slits." [GOC:tfm] synonym: "stave cell" EXACT [FMA:62817] xref: FMA:72140 is_a: CL:0002262 ! endothelial cell of sinusoid [Term] id: CL:0002652 name: endothelial cell of high endothelial venule namespace: cell def: "A venule endothelial cell that is cubodial, expresses leukocyte-specific receptors, and allows for passage of lymphocytes into bloodstream." [GOC:tfm, PMID:20726857] comment: Markers expressed on HEV include: MAdCAM-1,PNAd (sulfated and glycosylated molecules, i.e. GlyCAM-1, CD34, endomucin, nepmucin), ICAM-1, ICAM-2,Fuc-TVII, beta 3GlcNAcT-3, GlcNAc6ST2,CCL21, CCL19, CXCL13, CXCL12, Autotaxin, DARC, angiomodulin, LRHG. synonym: "HEV cell" EXACT [] synonym: "endothelial cell of postcapillary venule of lymph node" EXACT [] xref: FMA:67759 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:1000414 ! endothelial cell of venule [Term] id: CL:0002653 name: squamous endothelial cell namespace: cell def: "A endothelial cell of the venule that is squamous shaped. This is in contrast to the cubodial shape of high endothelial venule cells." [GOC:tfm] is_a: CL:0000076 ! squamous epithelial cell is_a: CL:1000414 ! endothelial cell of venule [Term] id: CL:0002654 name: epithelial cell of stratum corneum of esophageal epithelium namespace: cell def: "An epithelial cell of stratum corneum of esophageal epithelium." [GOC:tfm] xref: FMA:70733 is_a: CL:0002252 ! epithelial cell of esophagus [Term] id: CL:0002655 name: epithelial cell of stratum spinosum of esophageal epithelium namespace: cell def: "An epithelial cell of stratum spinosum of esophageal epithelium." [GOC:tfm] xref: FMA:70732 is_a: CL:0002252 ! epithelial cell of esophagus [Term] id: CL:0002656 name: glandular cell of endometrium namespace: cell def: "A glandular epithelial cell of the endometrium." [GOC:tfm] xref: FMA:86489 is_a: CL:0000150 ! glandular epithelial cell [Term] id: CL:0002657 name: glandular cell of esophagus namespace: cell def: "A glandular epithelial cell of the endometrium." [GOC:tfm] xref: FMA:86489 xref: FMA:86548 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0002252 ! epithelial cell of esophagus [Term] id: CL:0002658 name: glandular cell of the large intestine namespace: cell def: "A glandular epithelial cell of the large intestine." [GOC:tfm] xref: FMA:87194 is_a: CL:0000150 ! glandular epithelial cell [Term] id: CL:0002659 name: glandular cell of stomach namespace: cell def: "A glandular epithelial cell that is part of the stomach." [GOC:tfm] xref: FMA:86554 is_a: CL:0000150 ! glandular epithelial cell [Term] id: CL:0002660 name: luminal cell of acinus of lactiferous gland namespace: cell def: "A luminal epithelial cell of mammary gland located in acinus of structure." [GOC:tfm] comment: Consider if synonymous with mammary alveolar cell CL:0002325. Some use this term to refer to the non-lactating cell type that gives rise to the lactating cell type. xref: FMA:74505 is_a: CL:0002326 ! luminal epithelial cell of mammary gland [Term] id: CL:0002661 name: luminal cell of lactiferous terminal ductal lobular unit namespace: cell def: "A luminal cell of terminal ducts, i.e.e the terminal branch of a lactiferous duct which alveolar cells drain into." [GOC:tfm] xref: FMA:87168 is_a: CL:0002662 ! luminal cell of lactiferous duct [Term] id: CL:0002662 name: luminal cell of lactiferous duct namespace: cell def: "A luminal epithelial cell of the lactiferous duct. This cuboidal epithelial cell expresses keratin-18 and is estrogen-receptor alpha positive." [GOC:tfm, PMID:19022771] xref: FMA:74504 xref: FMA:74505 is_a: CL:0002326 ! luminal epithelial cell of mammary gland [Term] id: CL:0002663 name: myocardial endocrine cell of atrium namespace: cell def: "A myocardial endocrine cell that is part of the atrium." [GOC:tfm] xref: FMA:83389 is_a: CL:0002074 ! myocardial endocrine cell [Term] id: CL:0002664 name: cardioblast namespace: cell def: "A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart." [GOC:tfm, PMID:19745164] comment: Discrepancy in develops from origins prevents me from making the assertion that cardioblasts give rise to all instances of cardiocytes as we state cardiac muscle cells develop from cardiac myoblast, which in turn develop from muscle stem cell. is_a: CL:0000048 ! multi fate stem cell [Term] id: CL:0002665 name: otic fibrocyte namespace: cell def: "A fibrocyte of the cochlea that has specialized structural and molecular adaptions." [GOC:tfm, PMID:18353863] is_a: CL:0000135 ! fibrocyte [Term] id: CL:0002666 name: type 2 otic fibrocyte namespace: cell def: "An otic fibrocyte that underlies the spiral prominence and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." [GOC:tfm, PMID:18353863] synonym: "type II otic fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte [Term] id: CL:0002667 name: type 5 otic fibrocyte namespace: cell def: "An otic fibrocyte that resides above the stria vasularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." [GOC:tfm, PMID:18353863] synonym: "type V otic fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte [Term] id: CL:0002668 name: type 4 otic fibrocyte namespace: cell def: "An otic fibrocyte that is lateral to the basilar membrane and anchoris it to the lateral wall." [GOC:tfm, PMID:18353863] synonym: "type IV otic fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte [Term] id: CL:0002669 name: type 3 otic fibrocyte namespace: cell def: "An otic fibrocyte that lines the otic capsule." [GOC:tfm, PMID:18353863] synonym: "type III otic fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte [Term] id: CL:0002670 name: type 1 otic fibrocyte namespace: cell def: "An otic fibrocyte that underlies the stria vascularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." [GOC:tfm, PMID:18353863] synonym: "type I otic fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte [Term] id: CL:0002671 name: endothelial stalk cell namespace: cell def: "An endothelial stalk cell is a specialized endothelial cell that follows behind the tip cell of an angiogenic sprout." [GOC:tfm, PMID:21521739] is_a: CL:0000071 ! blood vessel endothelial cell [Term] id: CL:0002672 name: retinal progenitor cell namespace: cell def: "A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells." [GOC:tfm, PMID:20959166, PMID:21148186] is_a: CL:0000048 ! multi fate stem cell relationship: develops_from CL:0000133 ! neurectodermal cell [Term] id: CL:0002673 name: tongue muscle cell namespace: cell def: "A skeletal muscle cell that is part of the tongue." [GOC:tfm, PMID:18816858] is_a: CL:0000188 ! skeletal muscle cell [Term] id: CL:0002674 name: H minus namespace: cell def: "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus." [GOC:tfm] synonym: "H- cell" EXACT [] is_a: CL:0000521 ! fungal cell [Term] id: CL:0002675 name: H plus namespace: cell def: "A S. pombe cell type determined by mat1-Pc and mat1-Pi on the mat1 locus." [GOC:tfm] is_a: CL:0000521 ! fungal cell [Term] id: CL:0002676 name: neural crest derived neuroblast namespace: cell def: "A neuroblast derived from a neural crest cell." [GOC:tfm, PMID:17407019] is_a: CL:0000337 ! neuroblast (sensu Vertebrata) relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0002677 name: naive regulatory T cell namespace: cell def: "A regulatory T cell that has not encountered antigen." [GOC:tfm] comment: This cell type has been described as CD45RA-negative, but this doesn't fit with our current definition of naive T cell. is_a: CL:0000792 ! CD4-positive, CD25-positive, alpha-beta regulatory T cell is_a: CL:0000898 ! naive T cell [Term] id: CL:0002678 name: memory regulatory T cell namespace: cell def: "A CD4-positive, CD25-positive alpha-beta regulatory T cell that has encountered antigen." [GOC:tfm, PMID:21739668] comment: Cell has been described as being CD45RA-positive in human, but this doesn't fit with our current definition memory T cell. is_a: CL:0000792 ! CD4-positive, CD25-positive, alpha-beta regulatory T cell is_a: CL:0000813 ! memory T cell [Term] id: CL:0002679 name: natural helper lymphocyte namespace: cell def: "A lymphocyte found in adipose tissue that lacks lineage markers of other lymphocytes but is capable of mediating TH2 cytokine responses. This cell type is found in fat associated lymphoid clusters, proliferates in response to IL2 and produce large amounts of TH2 cytokines such as IL5, IL6 and IL13" [GOC:tfm, PMID:20023630] is_a: CL:0000542 ! lymphocyte [Term] id: CL:0002680 name: PP cell of intestine namespace: cell def: "A PP cell found in intestine." [GOC:tfm, PMID:2420136, PMID:728970] is_a: CL:0000696 ! PP cell [Term] id: CL:0002681 name: kidney cortical cell namespace: cell is_a: CL:1000497 ! kidney cell [Term] id: CL:0005000 name: spinal cord interneuron namespace: cell def: "A CNS interneuron located in the spinal cord." [CL:CVS] comment: Is_a interneuron, part_of UBERON:0002240. is_a: CL:0000402 ! CNS interneuron relationship: part_of UBERON:0002240 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! spinal cord [Term] id: CL:0005001 name: iridoblast namespace: cell def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore." [CL:CVS] comment: Derived from UBERON:0002342 neural crest. is_a: CL:0000055 ! non-terminally differentiated cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0005002 name: xanthoblast namespace: cell def: "A non-terminally differentiated cell that differentiates into a xanthophore." [CL:CVS] is_a: CL:0000055 ! non-terminally differentiated cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0005003 name: leucoblast namespace: cell def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore." [CL:CVS] is_a: CL:0000055 ! non-terminally differentiated cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0005004 name: pigment erythroblast namespace: cell def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore." [CL:CVS] is_a: CL:0000055 ! non-terminally differentiated cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0005005 name: cyanoblast namespace: cell def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore." [CL:CVS] is_a: CL:0000055 ! non-terminally differentiated cell relationship: develops_from CL:0000333 ! neural crest cell [Term] id: CL:0005006 name: ionocyte namespace: cell def: "Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment." [PMID:17555741, PMID:19268451] is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0005007 name: Kolmer-Agduhr neuron namespace: cell def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons." [PMID:18680739] synonym: "KA cell" EXACT [] synonym: "KA interneuron" EXACT [PMID:15539490] synonym: "KA neuron" EXACT [PMID:9634146] synonym: "Kolmer-Agduhr cell" EXACT [] is_a: CL:0000617 ! GABAergic neuron is_a: CL:0005000 ! spinal cord interneuron [Term] id: CL:0005008 name: macular hair cell namespace: cell def: "An auditory hair cell located in the macula that is sensitive to auditory stimuli." [GO:cvs] is_a: CL:0000202 ! auditory hair cell [Term] id: CL:0005009 name: renal principal cell namespace: cell def: "A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts." [CL:CVS] is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0002518 ! kidney epithelial cell relationship: part_of UBERON:0001231 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! nephron tubule [Term] id: CL:0005010 name: renal intercalated cell namespace: cell def: "A cuboidal epithelial cell of the kidney that regulates acid/base balance." [CL:CVS] synonym: "intercalated cell" EXACT [] xref: FMA:86560 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0002078 ! meso-epithelial cell is_a: CL:0002518 ! kidney epithelial cell [Term] id: CL:0005011 name: renal alpha-intercalated cell namespace: cell def: "A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance." [CL:CVS] is_a: CL:0005010 ! renal intercalated cell [Term] id: CL:0005012 name: multi-ciliated epithelial cell namespace: cell def: "A ciliated epithelial cell with many cilium." [CL:CVS] is_a: CL:0000067 ! ciliated epithelial cell [Term] id: CL:0005013 name: single ciliated epithelial cell namespace: cell def: "A ciliated epithelial cell with a single cilium." [CL:CVS] is_a: CL:0000067 ! ciliated epithelial cell [Term] id: CL:0005014 name: auditory epithelial support cell namespace: cell def: "A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells." [CL:CVS, GOC:tfm] is_a: CL:0000630 ! supportive cell is_a: CL:0000710 ! neurecto-epithelial cell is_a: CL:0002491 ! auditory epithelial cell [Term] id: CL:0005015 name: inner phalangeal cell namespace: cell def: "An auditory epithelial support cell that surrounds the nerve fibers and synapses of the auditory inner hair cells." [CL:CVS] xref: FMA:79801 is_a: CL:0002165 ! phalangeal cell [Term] id: CL:0005016 name: apical cell namespace: cell def: "Obsolete. Use PO:0030007 from Plant Ontology instead. The apical cell is the upper cell formed after the first division of a plant zygote." [TAIR:TB] is_obsolete: true comment: replaced_by: PO:0030007 [Term] id: CL:0005017 name: plant basal cell namespace: cell def: "Obsolete. Use PO:0002002 from Plant Ontology instead. The lower cell formed after the first division of a plant zygote." [TAIR:TB] is_obsolete: true comment: replaced_by: PO:0002002 [Term] id: CL:0005018 name: ghrelin secreting cell namespace: cell def: "A cell that secretes ghrelin, the peptide hormone that stimulates hunger." [CL:curator] is_a: CL:0000167 ! peptide hormone secreting cell [Term] id: CL:0005019 name: pancreatic epsilon cell namespace: cell def: "Ghrelin secreting cells found in the found in the exocrine pancreas." [PMID:14970313] comment: In mammals the endocrine pancreas is called the Islets of Langerhans. is_a: CL:0005018 ! ghrelin secreting cell relationship: part_of UBERON:0000017 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! exocrine pancreas [Term] id: CL:0005020 name: lymphangioblast namespace: cell def: "Lymphatic progenitor cells. Usually express Prox1, or prox1b." [CL:CVS] is_a: CL:0000048 ! multi fate stem cell [Term] id: CL:0005021 name: mesenchymal lymphangioblast namespace: cell def: "Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics." [PMID:15624319, PMID:18430230] is_a: CL:0000134 ! mesenchymal cell is_a: CL:0005020 ! lymphangioblast [Term] id: CL:0005022 name: vascular lymphangioblast namespace: cell def: "Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells." [CL:CVS] is_a: CL:0005020 ! lymphangioblast [Term] id: CL:1000082 name: stretch receptor cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell (sensu Animalia) [Term] id: CL:1000083 name: stratified keratinized epithelial stem cell namespace: cell is_a: CL:0000357 ! stratified epithelial stem cell [Term] id: CL:1000085 name: stratified non keratinized epithelial stem cell namespace: cell is_a: CL:0000357 ! stratified epithelial stem cell [Term] id: CL:1000191 name: pillar cell namespace: cell def: "A rod-like cell in the inner ear, having their heads joined and their bases on the basilar membrane widely separated so as to form a spiral tunnel known as the tunnel of Corti." [GOC:tfm, PMID:12417662] synonym: "cochlear pillar cell" RELATED [] synonym: "pillar cell of cochlea" EXACT [] synonym: "pillar cell of corti" EXACT [] synonym: "rod cell of Corti" EXACT [] xref: FMA:75722 is_a: CL:0002490 ! organ of Corti supporting cell [Term] id: CL:1000274 name: trophectodermal cell namespace: cell synonym: "trophectoderm cell" EXACT [] is_a: CL:0000349 ! extraembryonic cell [Term] id: CL:1000275 name: smooth muscle cell of small intestine namespace: cell def: "A smooth muscle cell that is part of the small intestine." [GOC:tfm] synonym: "non-striated muscle fiber of small intestine" EXACT [FMA:15050] xref: FMA:15050 is_a: CL:0002504 ! enteric smooth muscle cell [Term] id: CL:1000276 name: smooth muscle fiber of duodenum namespace: cell def: "A smooth muscle cell that is part of the duodenum." [GOC:tfm] synonym: "non-striated muscle fiber of duodenum" EXACT [FMA:15058] xref: FMA:15058 is_a: CL:1000275 ! smooth muscle cell of small intestine [Term] id: CL:1000277 name: smooth muscle fiber of jejunum namespace: cell def: "A smooth muscle cell that is part of the jejunum." [GOC:tfm] synonym: "non-striated muscle fiber of jejunum" EXACT [FMA:15062] xref: FMA:15062 is_a: CL:1000275 ! smooth muscle cell of small intestine [Term] id: CL:1000278 name: smooth muscle fiber of ileum namespace: cell def: "A smooth muscle cell that is part of the ileum." [GOC:tfm] synonym: "non-striated muscle fiber of ileum" EXACT [FMA:15066] xref: FMA:15066 is_a: CL:1000275 ! smooth muscle cell of small intestine [Term] id: CL:1000279 name: smooth muscle cell of large intestine namespace: cell def: "A smooth muscle cell that is part of the large intestine." [GOC:tfm] synonym: "non-striated muscle fiber of large intestine" EXACT [FMA:15653] xref: FMA:15653 is_a: CL:0002504 ! enteric smooth muscle cell [Term] id: CL:1000280 name: smooth muscle cell of colon namespace: cell def: "A smooth muscle cell that is part of the colon." [GOC:tfm] synonym: "non-striated muscle fiber of colon" EXACT [FMA:15663] xref: FMA:15663 is_a: CL:0002504 ! enteric smooth muscle cell [Term] id: CL:1000281 name: smooth muscle cell of cecum namespace: cell def: "A smooth muscle cell that is part of the cecum." [GOC:tfm] synonym: "non-striated muscle fiber of cecum" EXACT [FMA:15681] synonym: "smooth muscle fiber of cecum" EXACT [] xref: FMA:15681 is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:1000282 name: smooth muscle fiber of ascending colon namespace: cell def: "A smooth muscle cell that is part of the ascending colon." [GOC:tfm] synonym: "non-striated muscle fiber of ascending colon" EXACT [FMA:17518] xref: FMA:17518 is_a: CL:1000280 ! smooth muscle cell of colon [Term] id: CL:1000283 name: smooth muscle fiber of transverse colon namespace: cell def: "A smooth muscle cell that is part of the transverse colon." [GOC:tfm] synonym: "non-striated muscle fiber of transverse colon" EXACT [FMA:17519] xref: FMA:17519 is_a: CL:1000280 ! smooth muscle cell of colon [Term] id: CL:1000284 name: smooth muscle fiber of descending colon namespace: cell def: "A smooth muscle cell that is part of the descending colon." [GOC:tfm] synonym: "non-striated muscle fiber of descending colon" EXACT [FMA:17520] xref: FMA:17520 is_a: CL:1000280 ! smooth muscle cell of colon [Term] id: CL:1000285 name: smooth muscle cell of sigmoid colon namespace: cell def: "A smooth muscle cell that is part of the sigmoid colon." [GOC:tfm] synonym: "non-striated muscle fiber of sigmoid colon" EXACT [FMA:17521] xref: FMA:17521 is_a: CL:1000280 ! smooth muscle cell of colon [Term] id: CL:1000286 name: smooth muscle cell of rectum namespace: cell def: "A smooth muscle cell that is part of the rectum." [GOC:tfm] synonym: "non-striated muscle fiber of rectum" EXACT [FMA:17522] synonym: "smooth muscle fiber of rectum" EXACT [] xref: FMA:17522 is_a: CL:0002504 ! enteric smooth muscle cell [Term] id: CL:1000287 name: myocyte of anterior internodal tract namespace: cell def: "A muscle cell that is part of the anterior internodal tract." [GOC:tfm] xref: FMA:223276 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000288 name: myocyte of atrial branch of anterior internodal tract namespace: cell def: "A muscle cell that is part of the atrial branch of anterior internodal tract." [GOC:tfm] xref: FMA:223277 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000289 name: myocyte of atrial septal branch of anterior internodal tract namespace: cell def: "A muscle cell that is part of the atrial septal branch of anterior internodal tract." [GOC:tfm] xref: FMA:223278 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000290 name: myocyte of middle internodal tract namespace: cell def: "A muscle cell that is part of the middle internodal tract." [GOC:tfm] xref: FMA:223279 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000291 name: myocyte of posterior internodal tract namespace: cell def: "A muscle cell that is part of the posterior internodal tract." [GOC:tfm] xref: FMA:223280 is_a: CL:0002096 ! internodal tract myocyte [Term] id: CL:1000296 name: epithelial cell of urethra namespace: cell def: "An epithelial cell that is part of the urethra." [GOC:tfm] xref: FMA:256165 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000298 name: mesothelial cell of dura mater namespace: cell def: "A mesothelial cell that is part of the dura mater." [GOC:tfm] synonym: "squamous mesothelial cell of dura mater" EXACT [FMA:256516] xref: FMA:256516 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000299 name: fibroblast of connective tissue of prostate namespace: cell def: "A fibroblast that is part of the connective tissue of prostate." [GOC:tfm] xref: FMA:261271 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0002367 ! prostate gland [Term] id: CL:1000300 name: fibroblast of outer membrane of prostatic capsule namespace: cell def: "A fibroblast that is part of the outer membrane of prostatic capsule." [GOC:tfm] xref: FMA:261273 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0002367 ! prostate gland [Term] id: CL:1000301 name: fibroblast of subepithelial connective tissue of prostatic gland namespace: cell def: "A fibroblast that is part of the subepithelial connective tissue of prostatic gland." [GOC:tfm] xref: FMA:261275 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0002367 ! prostate gland [Term] id: CL:1000302 name: fibroblast of papillary layer of dermis namespace: cell def: "A fibroblast that is part of the papillary layer of dermis." [GOC:tfm] xref: FMA:261277 is_a: CL:0002551 ! fibroblast of dermis [Term] id: CL:1000303 name: fibroblast of areolar connective tissue namespace: cell def: "A fibroblast that is part of the areolar connective tissue." [GOC:tfm] xref: FMA:261279 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0006815 ! areolar connective tissue [Term] id: CL:1000304 name: fibroblast of connective tissue of nonglandular part of prostate namespace: cell def: "A fibroblast that is part of the connective tissue of nonglandular part of prostate." [GOC:tfm] xref: FMA:261281 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0002367 ! prostate gland [Term] id: CL:1000305 name: fibroblast of connective tissue of glandular part of prostate namespace: cell def: "A fibroblast that is part of the connective tissue of glandular part of prostate." [GOC:tfm] xref: FMA:261283 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0002367 ! prostate gland [Term] id: CL:1000306 name: fibroblast of tunica adventitia of artery namespace: cell def: "A fibroblast that is part of the tunica adventitia of artery." [GOC:tfm] xref: FMA:261285 is_a: CL:0000057 ! fibroblast [Term] id: CL:1000307 name: fibroblast of dense regular elastic tissue namespace: cell def: "A fibroblast that is part of the dense regular elastic tissue." [GOC:tfm] xref: FMA:261287 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0002521 ! elastic tissue [Term] id: CL:1000308 name: fibrocyte of adventitia of ureter namespace: cell def: "A fibrocyte that is part of the adventitia of ureter." [GOC:tfm] xref: FMA:261289 is_a: CL:0000135 ! fibrocyte [Term] id: CL:1000309 name: epicardial adipocyte namespace: cell def: "A fat cell that is part of the epicardial fat." [GOC:tfm] synonym: "adipocyte of epicardial fat" EXACT [FMA:261293] synonym: "epicardial fat cell" EXACT [FMA:261293] xref: FMA:261293 is_a: CL:0000136 ! fat cell relationship: part_of UBERON:0002348 ! epicardium [Term] id: CL:1000310 name: adipocyte of epicardial fat of right ventricle namespace: cell def: "A fat cell that is part of the epicardial fat of right ventricle." [GOC:tfm] synonym: "epicardial adipocyte of right ventricle" EXACT [FMA:261297] synonym: "epicardial fat cell of right ventricle" EXACT [FMA:261297] xref: FMA:261297 is_a: CL:0000136 ! fat cell relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: CL:1000311 name: adipocyte of epicardial fat of left ventricle namespace: cell def: "A fat cell that is part of the epicardial fat of left ventricle." [GOC:tfm] synonym: "epicardial adipocyte of left ventricle" EXACT [FMA:261300] synonym: "epicardial fat cell of left ventricle" EXACT [FMA:261300] xref: FMA:261300 is_a: CL:0000136 ! fat cell relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: CL:1000312 name: bronchial goblet cell namespace: cell def: "A goblet cell that is part of the epithelium of bronchus." [GOC:tfm] synonym: "goblet cell of epithelium of bronchus" EXACT [FMA:263032] xref: FMA:263032 is_a: CL:0000160 ! goblet cell [Term] id: CL:1000313 name: gastric goblet cell namespace: cell def: "A goblet cell that is part of the epithelium of stomach." [GOC:tfm] synonym: "goblet cell of epithelium of stomach" EXACT [FMA:263035] xref: FMA:263035 is_a: CL:0000160 ! goblet cell is_a: CL:0002659 ! glandular cell of stomach [Term] id: CL:1000314 name: goblet cell of epithelium of gastric cardiac gland namespace: cell def: "A goblet cell that is part of the epithelium of gastric cardiac gland." [GOC:tfm] xref: FMA:263038 is_a: CL:1000313 ! gastric goblet cell relationship: part_of UBERON:0008859 ! cardiac gastric gland [Term] id: CL:1000315 name: goblet cell of epithelium of principal gastric gland namespace: cell def: "A goblet cell that is part of the epithelium of principal gastric gland." [GOC:tfm] xref: FMA:263040 is_a: CL:1000313 ! gastric goblet cell [Term] id: CL:1000316 name: goblet cell of epithelium of small intestine namespace: cell def: "A goblet cell that is part of the epithelium of small intestine." [GOC:tfm] xref: FMA:263042 is_a: CL:0000160 ! goblet cell is_a: CL:0002254 ! epithelial cell of small intestine [Term] id: CL:1000317 name: goblet cell of epithelium of intestinal villus namespace: cell def: "A goblet cell that is part of the epithelium of intestinal villus." [GOC:tfm] xref: FMA:263046 is_a: CL:0000160 ! goblet cell relationship: part_of UBERON:0001213 ! intestinal villus [Term] id: CL:1000318 name: goblet cell of epithelium of crypt of lieberkuhn of small intestine namespace: cell def: "A goblet cell that is part of the epithelium of crypt of lieberkuhn of small intestine." [GOC:tfm] xref: FMA:263050 is_a: CL:1000316 ! goblet cell of epithelium of small intestine relationship: part_of UBERON:0001983 ! crypt of lieberkuhn [Term] id: CL:1000319 name: goblet cell of epithelium proper of small intestine namespace: cell def: "A goblet cell that is part of the epithelium proper of small intestine." [GOC:tfm] xref: FMA:263052 is_a: CL:1000316 ! goblet cell of epithelium of small intestine [Term] id: CL:1000320 name: goblet cell of epithelium of large intestine namespace: cell def: "A goblet cell that is part of the epithelium of large intestine." [GOC:tfm] xref: FMA:263054 is_a: CL:0000160 ! goblet cell is_a: CL:0002253 ! epithelial cell of large intestine is_a: CL:0002658 ! glandular cell of the large intestine [Term] id: CL:1000321 name: goblet cell of epithelium of crypt of lieberkuhn of large intestine namespace: cell def: "A goblet cell that is part of the epithelium of crypt of lieberkuhn of large intestine." [GOC:tfm] xref: FMA:263056 is_a: CL:1000320 ! goblet cell of epithelium of large intestine relationship: part_of UBERON:0001983 ! crypt of lieberkuhn [Term] id: CL:1000322 name: pancreatic goblet cell namespace: cell def: "A goblet cell that is part of the epithelium of pancreatic duct." [GOC:tfm] synonym: "goblet cell of epithelium of pancreatic duct" EXACT [FMA:263058] xref: FMA:263058 is_a: CL:0000069 ! branched duct epithelial cell is_a: CL:0000160 ! goblet cell [Term] id: CL:1000323 name: goblet cell of epithelium of pyloric gland namespace: cell def: "A goblet cell that is part of the epithelium of pyloric gland." [GOC:tfm] xref: FMA:263061 is_a: CL:0000160 ! goblet cell relationship: part_of UBERON:0008861 ! pyloric gastric gland [Term] id: CL:1000324 name: goblet cell of epithelium proper of duodenum namespace: cell def: "A goblet cell that is part of the epithelium proper of duodenum." [GOC:tfm] xref: FMA:263063 is_a: CL:0000160 ! goblet cell relationship: part_of UBERON:0002114 ! duodenum [Term] id: CL:1000325 name: goblet cell of epithelium proper of jejunum namespace: cell def: "A goblet cell that is part of the epithelium proper of jejunum." [GOC:tfm] xref: FMA:263065 is_a: CL:0000160 ! goblet cell relationship: part_of UBERON:0002115 ! jejunum [Term] id: CL:1000326 name: goblet cell of epithelium proper of ileum namespace: cell def: "A goblet cell that is part of the epithelium proper of ileum." [GOC:tfm] xref: FMA:263067 is_a: CL:0000160 ! goblet cell relationship: part_of UBERON:0002116 ! ileum [Term] id: CL:1000327 name: goblet cell of epithelium proper of appendix namespace: cell def: "A goblet cell that is part of the epithelium proper of appendix." [GOC:tfm] xref: FMA:263069 is_a: CL:0000160 ! goblet cell relationship: part_of UBERON:0001154 ! appendix [Term] id: CL:1000328 name: goblet cell of epithelium proper of large intestine namespace: cell def: "A goblet cell that is part of the epithelium proper of large intestine." [GOC:tfm] xref: FMA:263071 is_a: CL:1000320 ! goblet cell of epithelium of large intestine [Term] id: CL:1000329 name: tracheal goblet cell namespace: cell def: "A goblet cell that is part of the epithelium of trachea." [GOC:tfm] synonym: "goblet cell of epithelium of trachea" EXACT [FMA:263075] xref: FMA:263075 is_a: CL:0000160 ! goblet cell [Term] id: CL:1000330 name: serous cell of epithelium of trachea namespace: cell def: "A serous secreting cell that is part of the epithelium of trachea." [GOC:tfm] xref: FMA:263078 is_a: CL:0000313 ! serous secreting cell [Term] id: CL:1000331 name: serous cell of epithelium of bronchus namespace: cell def: "A serous secreting cell that is part of the epithelium of bronchus." [GOC:tfm] xref: FMA:263080 is_a: CL:0000313 ! serous secreting cell [Term] id: CL:1000332 name: serous cell of epithelium of terminal bronchiole namespace: cell def: "A serous secreting cell that is part of the epithelium of terminal bronchiole." [GOC:tfm] xref: FMA:263082 is_a: CL:0000313 ! serous secreting cell [Term] id: CL:1000333 name: serous cell of epithelium of lobular bronchiole namespace: cell def: "A serous secreting cell that is part of the epithelium of bronchiole." [GOC:tfm] xref: FMA:263084 is_a: CL:0000313 ! serous secreting cell [Term] id: CL:1000334 name: enterocyte of epithelium of small intestine namespace: cell def: "An enterocyte that is part of the epithelium of small intestine." [GOC:tfm] xref: FMA:263086 is_a: CL:0000584 ! enterocyte is_a: CL:0002254 ! epithelial cell of small intestine [Term] id: CL:1000335 name: enterocyte of epithelium of intestinal villus namespace: cell def: "An enterocyte that is part of the epithelium of intestinal villus." [GOC:tfm] xref: FMA:263088 is_a: CL:0000584 ! enterocyte relationship: part_of UBERON:0001213 ! intestinal villus [Term] id: CL:1000337 name: enterocyte of epithelium of duodenal gland namespace: cell def: "An enterocyte that is part of the epithelium of duodenal gland." [GOC:tfm] xref: FMA:263092 is_a: CL:1000334 ! enterocyte of epithelium of small intestine relationship: part_of UBERON:0001212 ! duodenal gland [Term] id: CL:1000338 name: enterocyte of epithelium of crypt of lieberkuhn of small intestine namespace: cell def: "An enterocyte that is part of the epithelium of crypt of lieberkuhn of small intestine." [GOC:tfm] xref: FMA:263094 is_a: CL:1000334 ! enterocyte of epithelium of small intestine relationship: part_of UBERON:0001983 ! crypt of lieberkuhn [Term] id: CL:1000339 name: enterocyte of epithelium proper of small intestine namespace: cell def: "An enterocyte that is part of the epithelium proper of small intestine." [GOC:tfm] xref: FMA:263096 is_a: CL:1000334 ! enterocyte of epithelium of small intestine [Term] id: CL:1000340 name: enterocyte of epithelium proper of duodenum namespace: cell def: "An enterocyte that is part of the epithelium proper of duodenum." [GOC:tfm] xref: FMA:263098 is_a: CL:1000337 ! enterocyte of epithelium of duodenal gland is_a: CL:1000339 ! enterocyte of epithelium proper of small intestine [Term] id: CL:1000341 name: enterocyte of epithelium proper of jejunum namespace: cell def: "An enterocyte that is part of the epithelium proper of jejunum." [GOC:tfm] xref: FMA:263100 is_a: CL:1000339 ! enterocyte of epithelium proper of small intestine [Term] id: CL:1000342 name: enterocyte of epithelium proper of ileum namespace: cell def: "An enterocyte that is part of the epithelium proper of ileum." [GOC:tfm] xref: FMA:263102 is_a: CL:1000339 ! enterocyte of epithelium proper of small intestine [Term] id: CL:1000343 name: paneth cell of epithelium of small intestine namespace: cell def: "A paneth cell that is part of the epithelium of small intestine." [GOC:tfm] xref: FMA:263104 is_a: CL:0000510 ! paneth cell is_a: CL:0002254 ! epithelial cell of small intestine [Term] id: CL:1000344 name: paneth cell of epithelium proper of small intestine namespace: cell def: "A Paneth cell that is part of the epithelium proper of small intestine." [GOC:tfm] xref: FMA:263106 is_a: CL:1000343 ! paneth cell of epithelium of small intestine [Term] id: CL:1000345 name: paneth cell of epithelium of crypt of lieberkuhn of small intestine namespace: cell def: "A Paneth cell that is part of the epithelium of crypt of lieberkuhn of small intestine." [GOC:tfm] xref: FMA:263108 is_a: CL:1000343 ! paneth cell of epithelium of small intestine relationship: part_of UBERON:0001983 ! crypt of lieberkuhn [Term] id: CL:1000346 name: vacuolar absorptive cell of epithelium proper of large intestine namespace: cell alt_id: CL:1000336 def: "MERGED DEFINITION: TARGET DEFINITION: A columnar cell of the colon that is part of the epithelium proper of large intestine. SOURCE DEFINITION: An enterocyte that is part of the epithelium proper of large intestine." [GOC:tfm] synonym: "enterocyte of epithelium proper of large intestine" EXACT [] xref: FMA:263090 xref: FMA:263112 is_a: CL:0002071 ! enterocyte of epithelium of large intestine [Term] id: CL:1000347 name: vacuolar absorptive cell of epithelium of colon namespace: cell def: "A columnar cell of the colon that is part of the colonic epithelium." [GOC:tfm] xref: FMA:263114 is_a: CL:0002071 ! enterocyte of epithelium of large intestine [Term] id: CL:1000348 name: basal cell of epithelium of trachea namespace: cell def: "A basal cell that is part of the epithelium of trachea." [GOC:tfm] xref: FMA:263118 is_a: CL:0002633 ! respiratory basal cell [Term] id: CL:1000349 name: basal cell of epithelium of bronchus namespace: cell alt_id: CL:0002331 def: "A basal cell found in the bronchus epithelium." [GOC:tfm] synonym: "basal cell of bronchus" EXACT [] xref: FMA:263120 is_a: CL:0002328 ! bronchial epithelial cell is_a: CL:0002329 ! basal epithelial cell of tracheobronchial tree is_a: CL:0002633 ! respiratory basal cell [Term] id: CL:1000350 name: basal cell of epithelium of terminal bronchiole namespace: cell def: "A basal cell that is part of the epithelium of terminal bronchiole." [GOC:tfm] xref: FMA:263122 is_a: CL:0002633 ! respiratory basal cell [Term] id: CL:1000351 name: basal cell of epithelium of respiratory bronchiole namespace: cell def: "A basal cell that is part of the epithelium of respiratory bronchiole." [GOC:tfm] xref: FMA:263124 is_a: CL:0002633 ! respiratory basal cell [Term] id: CL:1000352 name: basal cell of epithelium of lobular bronchiole namespace: cell def: "A basal cell that is part of the epithelium of bronchiole." [GOC:tfm] xref: FMA:263126 is_a: CL:0002633 ! respiratory basal cell [Term] id: CL:1000353 name: microfold cell of epithelium of small intestine namespace: cell def: "A M cell that is part of the epithelium of small intestine." [GOC:tfm] xref: FMA:263128 is_a: CL:0000682 ! M cell is_a: CL:0002254 ! epithelial cell of small intestine [Term] id: CL:1000354 name: microfold cell of epithelium of intestinal villus namespace: cell def: "A M cell that is part of the epithelium of intestinal villus." [GOC:tfm] xref: FMA:263130 is_a: CL:0000682 ! M cell relationship: part_of UBERON:0001213 ! intestinal villus [Term] id: CL:1000355 name: microfold cell of epithelium proper of small intestine namespace: cell def: "A M cell that is part of the epithelium proper of small intestine." [GOC:tfm] xref: FMA:263132 is_a: CL:1000353 ! microfold cell of epithelium of small intestine [Term] id: CL:1000356 name: microfold cell of epithelium proper of duodenum namespace: cell def: "A M cell that is part of the epithelium proper of duodenum." [GOC:tfm] xref: FMA:263134 is_a: CL:0000682 ! M cell [Term] id: CL:1000357 name: microfold cell of epithelium proper of jejunum namespace: cell def: "A M cell that is part of the epithelium proper of jejunum." [GOC:tfm] xref: FMA:263136 is_a: CL:0000682 ! M cell [Term] id: CL:1000358 name: microfold cell of epithelium proper of ileum namespace: cell def: "A M cell that is part of the epithelium proper of ileum." [GOC:tfm] xref: FMA:263138 is_a: CL:0000682 ! M cell [Term] id: CL:1000359 name: microfold cell of epithelium proper of appendix namespace: cell def: "A M cell that is part of the epithelium proper of appendix." [GOC:tfm] xref: FMA:263140 is_a: CL:0000682 ! M cell [Term] id: CL:1000360 name: microfold cell of epithelium proper of large intestine namespace: cell def: "A M cell that is part of the epithelium proper of large intestine." [GOC:tfm] xref: FMA:263142 is_a: CL:0000682 ! M cell is_a: CL:0002253 ! epithelial cell of large intestine [Term] id: CL:1000361 name: transitional myocyte of interatrial septum namespace: cell def: "A transitional myocyte that is part of the interatrial septum." [GOC:tfm] xref: FMA:263152 is_a: CL:0002073 ! transitional myocyte [Term] id: CL:1000362 name: transitional myocyte of interventricular septum namespace: cell def: "A transitional myocyte that is part of the interventricular septum." [GOC:tfm] xref: FMA:263154 is_a: CL:0002073 ! transitional myocyte [Term] id: CL:1000363 name: transitional myocyte of atrial branch of anterior internodal tract namespace: cell def: "A transitional myocyte that is part of the atrial branch of anterior internodal tract." [GOC:tfm] xref: FMA:263156 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000364 name: transitional myocyte of anterior internodal tract namespace: cell def: "A transitional myocyte that is part of the anterior internodal tract." [GOC:tfm] xref: FMA:263158 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000365 name: transitional myocyte of atrial septal branch of anterior internodal tract namespace: cell def: "A transitional myocyte that is part of the atrial septal branch of anterior internodal tract." [GOC:tfm] xref: FMA:263160 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000366 name: transitional myocyte of middle internodal tract namespace: cell def: "A transitional myocyte that is part of the middle internodal tract." [GOC:tfm] xref: FMA:263162 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000367 name: transitional myocyte of posterior internodal tract namespace: cell def: "A transitional myocyte that is part of the posterior internodal tract." [GOC:tfm] xref: FMA:263164 is_a: CL:1000480 ! transitional myocyte of internodal tract [Term] id: CL:1000368 name: transitional myocyte of anterior division of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the anterior division of left branch of atrioventricular bundle." [GOC:tfm] xref: FMA:263166 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle relationship: part_of UBERON:0005986 ! left branch of atrioventricular bundle [Term] id: CL:1000369 name: transitional myocyte of septal division of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the septal division of left branch of atrioventricular bundle." [GOC:tfm] xref: FMA:263168 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle relationship: part_of UBERON:0005986 ! left branch of atrioventricular bundle [Term] id: CL:1000370 name: transitional myocyte of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the left branch of atrioventricular bundle." [GOC:tfm] xref: FMA:263170 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle relationship: part_of UBERON:0005986 ! left branch of atrioventricular bundle [Term] id: CL:1000371 name: transitional myocyte of right branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the right branch of atrioventricular bundle." [GOC:tfm] xref: FMA:263172 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle relationship: part_of UBERON:0005987 ! right branch of atrioventricular bundle [Term] id: CL:1000372 name: transitional myocyte of atrial part of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the atrial part of atrioventricular bundle." [GOC:tfm] xref: FMA:263174 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle [Term] id: CL:1000373 name: transitional myocyte of ventricular part of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the ventricular part of atrioventricular bundle." [GOC:tfm] xref: FMA:263176 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle [Term] id: CL:1000374 name: transitional myocyte of posterior division of left branch of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the posterior division of left branch of atrioventricular bundle." [GOC:tfm] xref: FMA:263178 is_a: CL:1000481 ! transitional myocyte of atrioventricular bundle relationship: part_of UBERON:0005986 ! left branch of atrioventricular bundle [Term] id: CL:1000375 name: myocardial endocrine cell of septal division of left branch of atrioventricular bundle namespace: cell def: "A myocardial endocrine cell that is part of the septal division of left branch of atrioventricular bundle." [GOC:tfm] xref: FMA:263180 is_a: CL:0002074 ! myocardial endocrine cell relationship: part_of UBERON:0005986 ! left branch of atrioventricular bundle [Term] id: CL:1000376 name: purkinje myocyte of interventricular septum namespace: cell def: "A Purkinje myocyte that is part of the interventricular septum." [GOC:tfm] xref: FMA:263182 is_a: CL:0002068 ! Purkinje myocyte [Term] id: CL:1000377 name: dense-core granulated cell of epithelium of trachea namespace: cell def: "A Feyrter cell that is part of the epithelium of trachea." [GOC:tfm] xref: FMA:263184 is_a: CL:0000307 ! tracheal epithelial cell is_a: CL:0002066 ! Feyrter cell [Term] id: CL:1000378 name: type 1 vestibular sensory cell of stato-acoustic epithelium namespace: cell def: "A type I vestibular sensory cell that is part of the stato-acoustic epithelium." [GOC:tfm] xref: FMA:263186 is_a: CL:0002070 ! type I vestibular sensory cell [Term] id: CL:1000379 name: type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [GOC:tfm] xref: FMA:263188 is_a: CL:0002070 ! type I vestibular sensory cell relationship: part_of UBERON:0003241 ! epithelium of utricle [Term] id: CL:1000380 name: type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [GOC:tfm] xref: FMA:263190 is_a: CL:0002070 ! type I vestibular sensory cell relationship: part_of UBERON:0003242 ! epithelium of saccule [Term] id: CL:1000381 name: type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [GOC:tfm] xref: FMA:263192 is_a: CL:0002070 ! type I vestibular sensory cell relationship: part_of UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: CL:1000382 name: type 2 vestibular sensory cell of stato-acoustic epithelium namespace: cell def: "A type II vestibular sensory cell that is part of the stato-acoustic epithelium." [GOC:tfm] xref: FMA:263194 is_a: CL:0002069 ! type II vestibular sensory cell [Term] id: CL:1000383 name: type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [GOC:tfm] xref: FMA:263196 is_a: CL:0002069 ! type II vestibular sensory cell relationship: part_of UBERON:0003241 ! epithelium of utricle [Term] id: CL:1000384 name: type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [GOC:tfm] xref: FMA:263198 is_a: CL:0002069 ! type II vestibular sensory cell relationship: part_of UBERON:0003242 ! epithelium of saccule [Term] id: CL:1000385 name: type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [GOC:tfm] xref: FMA:263200 is_a: CL:0002069 ! type II vestibular sensory cell [Term] id: CL:1000391 name: melanocyte of eyelid namespace: cell def: "A melanocyte that is part of the eyelid." [GOC:tfm] synonym: "eyelid melanocyte" EXACT [FMA:59175] synonym: "sebaceous gland of wolff" EXACT [FMA:59175] xref: FMA:59175 is_a: CL:0000148 ! melanocyte [Term] id: CL:1000394 name: myoepithelial cell of intralobular lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the intralobular part of terminal lactiferous duct." [GOC:tfm] xref: FMA:62158 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000397 name: endothelial cell of venous sinus of red pulp of spleen namespace: cell def: "An endothelial cell that is part of the venous sinus of red pulp of spleen." [GOC:tfm] comment: todo - add logical definition to UBERON:0009967 xref: FMA:62817 is_a: CL:0002651 ! endothelial cell of venous sinus of spleen [Term] id: CL:1000398 name: endothelial cell of hepatic sinusoid namespace: cell def: "An endothelial cell that is part of the hepatic sinusoid." [GOC:tfm] synonym: "endotheliocyte of hepatic sinusoid" EXACT [FMA:62911] xref: FMA:62911 is_a: CL:0002262 ! endothelial cell of sinusoid [Term] id: CL:1000405 name: epithelial cell of appendix namespace: cell def: "An epithelial cell that is part of the appendix." [GOC:tfm] synonym: "columnar epitheliocyte of appendix" EXACT [FMA:63602] synonym: "epithelial cell of vermiform appendix" EXACT [FMA:63602] xref: FMA:63602 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000409 name: myocyte of sinuatrial node namespace: cell def: "A muscle cell that is part of the sinuatrial node." [FMA:67102, GOC:tfm] synonym: "SA nodal myocyte" EXACT [FMA:67102] synonym: "myocyte of sinoatrial node" EXACT [FMA:67102] synonym: "sinuatrial node myocyte" EXACT [FMA:67102] xref: FMA:67102 is_a: CL:0002072 ! nodal myocyte [Term] id: CL:1000410 name: myocyte of atrioventricular node namespace: cell def: "A muscle cell that is part of the atrioventricular node." [FMA:67106, GOC:tfm] synonym: "AV nodal myocyte" EXACT [FMA:67106] synonym: "atrioventricular node myocyte" EXACT [FMA:67106] xref: FMA:67106 is_a: CL:0002072 ! nodal myocyte [Term] id: CL:1000411 name: endothelial cell of peyer's patch namespace: cell def: "An endothelial cell that is part of the small intestine Peyer's patch." [GOC:tfm] xref: FMA:67757 is_a: CL:0000115 ! endothelial cell [Term] id: CL:1000412 name: endothelial cell of arteriole namespace: cell def: "An endothelial cell that is part of the arteriole." [GOC:tfm] xref: FMA:67760 xref: KUPO:0001097 is_a: CL:0000071 ! blood vessel endothelial cell [Term] id: CL:1000413 name: endothelial cell of artery namespace: cell alt_id: CL:0002542 def: "A blood vessel endothelial cell that is part of an arterial endothelium." [GOC:tfm] synonym: "arterial endothelial cell" EXACT [] xref: BTO:0004758 xref: FMA:67761 xref: KUPO:0001095 is_a: CL:0000071 ! blood vessel endothelial cell relationship: part_of UBERON:0001917 ! endothelium of artery [Term] id: CL:1000414 name: endothelial cell of venule namespace: cell def: "An endothelial cell that is part of the venule." [GOC:tfm] xref: FMA:67762 is_a: CL:0002139 ! endothelial cell of vascular tree [Term] id: CL:1000415 name: epithelial cell of gall bladder namespace: cell def: "An epithelial cell that is part of the gallbladder." [GOC:tfm] xref: FMA:67780 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000416 name: myoepithelial cell of lactiferous gland namespace: cell def: "A myoepithelial cell that is part of the mammary gland." [GOC:tfm] synonym: "basal cell of lactiferous duct" EXACT [FMA:67800] xref: FMA:67800 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000417 name: myoepithelial cell of sweat gland namespace: cell def: "A myoepithelial cell that is part of the sweat gland." [GOC:tfm] xref: FMA:67801 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000418 name: myoepithelial cell of lactiferous alveolus namespace: cell def: "A myoepithelial cell that is part of the mammary gland alveolus." [GOC:tfm] synonym: "basal cell of alveolus of lactiferous gland" EXACT [FMA:67802] synonym: "myoepithelial cell of mammary alveolus" EXACT [FMA:67802] xref: FMA:67802 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000419 name: myoepithelial cell of lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the lactiferous duct." [GOC:tfm] xref: FMA:67803 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000420 name: myoepithelial cell of terminal lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the terminal lactiferous duct." [GOC:tfm] xref: FMA:67804 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000424 name: chromaffin cell of paraaortic body namespace: cell def: "A chromaffin cell that is part of the paraaortic body." [GOC:tfm] synonym: "chromaffin cell of para-aortic body" EXACT [FMA:69328] xref: FMA:69328 is_a: CL:0000166 ! chromaffin cell [Term] id: CL:1000425 name: chromaffin cell of paraganglion namespace: cell def: "A chromaffin cell that is part of the paraganglion." [GOC:tfm] xref: FMA:69335 is_a: CL:0000166 ! chromaffin cell [Term] id: CL:1000426 name: chromaffin cell of adrenal gland namespace: cell def: "A chromaffin cell that is part of the adrenal gland." [GOC:tfm] xref: FMA:69794 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000166 ! chromaffin cell [Term] id: CL:1000427 name: adrenal cortex chromaffin cell namespace: cell def: "A chromaffin cell that is part of the adrenal cortex." [GOC:tfm] comment: Not clear this cell type exists. Can't call it a cortical adrenal cell because of different germ layer origin. synonym: "chromaffin cell of adrenal cortex" EXACT [] xref: FMA:69795 is_a: CL:0000166 ! chromaffin cell [Term] id: CL:1000428 name: stem cell of epidermis namespace: cell def: "A somatic stem cell that is part of the epidermis." [GOC:tfm] synonym: "epidermal stem cell" EXACT [FMA:70541] xref: FMA:70541 is_a: CL:0000723 ! somatic stem cell [Term] id: CL:1000432 name: conjunctival epithelial cell namespace: cell def: "An epithelial cell that is part of the conjunctiva." [GOC:tfm] synonym: "epithelial cell of conjunctiva" EXACT [FMA:70552] xref: FMA:70552 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000433 name: epithelial cell of lacrimal canaliculus namespace: cell def: "An epithelial cell that is part of the lacrimal canaliculus." [GOC:tfm] xref: FMA:70553 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000434 name: epithelial cell of external acoustic meatus namespace: cell def: "An epithelial cell that is part of the external acoustic meatus." [GOC:tfm] xref: FMA:70555 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000435 name: epithelial cell of lacrimal duct namespace: cell def: "An epithelial cell that is part of the lacrimal duct." [GOC:tfm] xref: FMA:70559 is_a: CL:0000072 ! non-branched duct epithelial cell [Term] id: CL:1000436 name: epithelial cell of lacrimal sac namespace: cell def: "An epithelial cell that is part of the lacrimal sac." [GOC:tfm] xref: FMA:70560 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000437 name: epithelial cell of nasolacrimal duct namespace: cell def: "An epithelial cell that is part of the nasolacrimal duct." [GOC:tfm] xref: FMA:70561 is_a: CL:0000072 ! non-branched duct epithelial cell [Term] id: CL:1000438 name: epithelial cell of wall of inferior part of anal canal namespace: cell def: "An epithelial cell that is part of the wall of inferior part of anal canal." [GOC:tfm] xref: FMA:70562 is_a: CL:0002634 ! epithelial cell of anal column [Term] id: CL:1000441 name: epithelial cell of viscerocranial mucosa namespace: cell def: "An epithelial cell that is part of the viscerocranial mucosa." [GOC:tfm] xref: FMA:70583 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000442 name: urothelial cell of trigone of urinary bladder namespace: cell def: "An urothelial cell that is part of the trigone of urinary bladder." [GOC:tfm] synonym: "epithelial cell of vesical trigone" EXACT [FMA:70598] xref: FMA:70598 is_a: CL:0000731 ! urothelial cell [Term] id: CL:1000443 name: ciliary muscle cell namespace: cell def: "A smooth muscle cell that is part of the ciliary body." [GOC:tfm] synonym: "smooth muscle cell of ciliary body" EXACT [FMA:70610] xref: FMA:70610 is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:1000444 name: mesothelial cell of anterior chamber of eye namespace: cell def: "A mesothelial cell that is part of the anterior chamber of eyeball." [GOC:tfm] xref: FMA:70615 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000445 name: myoepithelial cell of dilator pupillae namespace: cell def: "A myoepithelial cell that is part of the dilatator pupillae." [GOC:tfm] xref: FMA:70619 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000447 name: epithelial cell of stratum germinativum of esophagus namespace: cell def: "A basal cell that is part of the epithelium of esophagus." [GOC:tfm] synonym: "basal cell of esophageal epithelium" EXACT [FMA:70731] xref: FMA:70731 is_a: CL:0000646 ! basal cell [Term] id: CL:1000448 name: epithelial cell of sweat gland namespace: cell def: "An epithelial cell that is part of the sweat gland." [GOC:tfm] xref: FMA:70952 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000449 name: epithelial cell of nephron namespace: cell def: "An epithelial cell that is part of the nephron." [GOC:tfm] xref: FMA:70965 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000450 name: epithelial cell of glomerular capsule namespace: cell def: "An epithelial cell that is part of the glomerular capsule." [GOC:tfm] synonym: "Bowmans capsule epithelial cell" EXACT [] synonym: "epithelial cell of Bowman's capsule" EXACT [FMA:70966] xref: FMA:70966 xref: KUPO:0001034 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell is_a: CL:1000510 ! kidney glomerular epithelial cell is_a: CL:1000612 ! kidney corpuscule cell [Term] id: CL:1000451 name: epithelial cell of visceral layer of glomerular capsule namespace: cell def: "An epithelial cell that is part of the visceral layer of glomerular capsule." [GOC:tfm] synonym: "glomerular podocyte" EXACT [FMA:70967] xref: FMA:70967 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000452 name: epithelial cell of parietal layer of glomerular capsule namespace: cell def: "An epithelial cell that is part of the glomerular parietal epithelium." [GOC:tfm] xref: FMA:70968 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000453 name: epithelial cell of intermediate tubule namespace: cell def: "An epithelial cell that is part of the intermediate tubule." [GOC:tfm] xref: FMA:70980 is_a: CL:0002371 ! somatic cell is_a: CL:1000494 ! epithelial cell of renal tubule [Term] id: CL:1000454 name: kidney collecting duct epithelial cell namespace: cell def: "An epithelial cell that is part of the collecting duct of renal tubule." [GOC:tfm] synonym: "epithelial cell of renal collecting tubule" EXACT [FMA:70982] xref: FMA:70982 xref: KUPO:0001059 is_a: CL:0000072 ! non-branched duct epithelial cell is_a: CL:0002518 ! kidney epithelial cell is_a: CL:1001225 ! kidney collecting duct cell [Term] id: CL:1000456 name: mesothelial cell of parietal peritoneum namespace: cell def: "A mesothelial cell that is part of the parietal peritoneum." [GOC:tfm] xref: FMA:72142 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000457 name: mesothelial cell of visceral peritoneum namespace: cell def: "A mesothelial cell that is part of the visceral peritoneum." [GOC:tfm] xref: FMA:72143 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000458 name: melanocyte of skin namespace: cell def: "A melanocyte that is part of the skin of body." [GOC:tfm] synonym: "skin melanocyte" EXACT [FMA:72144] xref: FMA:72144 is_a: CL:0000148 ! melanocyte [Term] id: CL:1000465 name: chromaffin cell of ovary namespace: cell def: "A chromaffin cell that is part of the ovary." [GOC:tfm] xref: FMA:74319 is_a: CL:0000166 ! chromaffin cell [Term] id: CL:1000466 name: chromaffin cell of right ovary namespace: cell def: "A chromaffin cell that is part of the right ovary." [GOC:tfm] xref: FMA:74320 is_a: CL:0000166 ! chromaffin cell [Term] id: CL:1000467 name: chromaffin cell of left ovary namespace: cell def: "A chromaffin cell that is part of the left ovary." [GOC:tfm] xref: FMA:74321 is_a: CL:0000166 ! chromaffin cell [Term] id: CL:1000468 name: myoepithelial cell of acinus of lactiferous gland namespace: cell def: "A myoepithelial cell that is part of the acinus of lactiferous gland." [GOC:tfm] synonym: "basal cell of acinus of lactiferous gland" EXACT [FMA:74469] xref: FMA:74469 is_a: CL:0000185 ! myoepithelial cell relationship: part_of UBERON:0001912 ! lobule of lactiferous gland [Term] id: CL:1000469 name: myoepithelial cell of main lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the main lactiferous duct." [GOC:tfm] xref: FMA:74499 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000470 name: myoepithelial cell of primary lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the primary lactiferous duct." [GOC:tfm] xref: FMA:74500 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000471 name: myoepithelial cell of secondary lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the secondary lactiferous duct." [GOC:tfm] xref: FMA:74501 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000472 name: myoepithelial cell of tertiary lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the tertiary lactiferous duct." [GOC:tfm] xref: FMA:74502 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000473 name: myoepithelial cell of quarternary lactiferous duct namespace: cell def: "A myoepithelial cell that is part of the quarternary lactiferous duct." [GOC:tfm] xref: FMA:74503 is_a: CL:0000185 ! myoepithelial cell [Term] id: CL:1000477 name: pacemaker cell of sinuatrial node namespace: cell def: "A nodal myocyte that is part of the sinuatrial node." [GOC:tfm] synonym: "pacemaker cell of sinoatrial node" EXACT [] xref: FMA:83383 is_a: CL:1000409 ! myocyte of sinuatrial node relationship: part_of UBERON:0002351 ! sinoatrial node [Term] id: CL:1000478 name: transitional myocyte of sinuatrial node namespace: cell def: "A transitional myocyte that is part of the sinuatrial node." [GOC:tfm] synonym: "transitinal myocyte of sinoatrial node" EXACT [] xref: FMA:83384 is_a: CL:0002073 ! transitional myocyte [Term] id: CL:1000479 name: purkinje myocyte of atrioventricular node namespace: cell def: "A Purkinje myocyte that is part of the atrioventricular node." [GOC:tfm] xref: FMA:83386 is_a: CL:0002068 ! Purkinje myocyte [Term] id: CL:1000480 name: transitional myocyte of internodal tract namespace: cell def: "A transitional myocyte that is part of the internodal tract." [GOC:tfm] xref: FMA:83387 is_a: CL:0002073 ! transitional myocyte [Term] id: CL:1000481 name: transitional myocyte of atrioventricular bundle namespace: cell def: "A transitional myocyte that is part of the atrioventricular bundle." [GOC:tfm] xref: FMA:83388 xref: FMA:83885 is_a: CL:0002073 ! transitional myocyte [Term] id: CL:1000482 name: myocardial endocrine cell of interventricular septum namespace: cell def: "A myocardial endocrine cell that is part of the interventricular septum." [GOC:tfm] xref: FMA:83390 is_a: CL:0002074 ! myocardial endocrine cell [Term] id: CL:1000483 name: purkinje myocyte of internodal tract namespace: cell def: "A Purkinje myocyte that is part of the internodal tract." [GOC:tfm] xref: FMA:83392 is_a: CL:0002068 ! Purkinje myocyte [Term] id: CL:1000484 name: purkinje myocyte of atrioventricular bundle namespace: cell def: "A Purkinje myocyte that is part of the atrioventricular bundle." [GOC:tfm] xref: FMA:83393 is_a: CL:0002068 ! Purkinje myocyte [Term] id: CL:1000486 name: basal cell of urothelium namespace: cell def: "A basal cell that is part of the urothelium." [GOC:tfm] xref: FMA:84150 is_a: CL:0000646 ! basal cell [Term] id: CL:1000487 name: smooth muscle cell of prostate namespace: cell def: "A smooth muscle cell that is part of the prostate gland." [GOC:tfm] synonym: "smooth muscle fiber of prostate" EXACT [FMA:84583] xref: FMA:84583 is_a: CL:0000192 ! smooth muscle cell [Term] id: CL:1000488 name: cholangiocyte namespace: cell def: "An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts." [GOC:tfm, PMID:16550043, PMID:18356246] synonym: "epithelial cell of bile duct" EXACT [] synonym: "hepatoblast" EXACT [] xref: FMA:86481 is_a: CL:0000069 ! branched duct epithelial cell [Term] id: CL:1000489 name: reticular cell of splenic cord namespace: cell def: "A reticular cell that is part of the splenic cord." [GOC:tfm] xref: FMA:86497 is_a: CL:0000432 ! reticular cell [Term] id: CL:1000490 name: mesothelial cell of peritoneum namespace: cell def: "A mesothelial cell that is part of the peritoneum." [GOC:tfm] synonym: "peritoneal mesothelial cell" EXACT [FMA:86736] xref: FMA:86736 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000491 name: mesothelial cell of pleura namespace: cell def: "A mesothelial cell that is part of the pleura." [GOC:tfm] synonym: "pleural mesothelial cell" EXACT [FMA:86737] xref: FMA:86737 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000492 name: mesothelial cell of parietal pleura namespace: cell def: "A mesothelial cell that is part of the parietal pleura." [GOC:tfm] xref: FMA:86738 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000493 name: mesothelial cell of visceral pleura namespace: cell def: "A mesothelial cell that is part of the visceral pleura." [GOC:tfm] xref: FMA:86739 is_a: CL:0000077 ! mesothelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:1000494 name: epithelial cell of renal tubule namespace: cell def: "An epithelial cell that is part of the renal tubule." [GOC:tfm] synonym: "kidney tubule epithelial cell" EXACT [] xref: FMA:86785 xref: KUPO:0001022 is_a: CL:0002518 ! kidney epithelial cell is_a: CL:1000507 ! kidney tubule cell relationship: part_of UBERON:0004810 ! nephron tubule epithelium [Term] id: CL:1000495 name: goblet cell of small intestine namespace: cell def: "A goblet cell that is part of the small intestine." [GOC:tfm] synonym: "small intestinal goblet cell" EXACT [FMA:86929] xref: FMA:86929 is_a: CL:0000160 ! goblet cell [Term] id: CL:1000497 name: kidney cell namespace: cell xref: KUPO:0001010 is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell relationship: part_of UBERON:0002113 ! kidney [Term] id: CL:1000500 name: kidney interstitial cell namespace: cell xref: KUPO:0001013 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0005215 ! kidney interstitium [Term] id: CL:1000504 name: kidney medulla cell namespace: cell xref: KUPO:0001017 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0000362 ! renal medulla [Term] id: CL:1000505 name: kidney pelvis cell namespace: cell xref: KUPO:0001018 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0001224 ! renal pelvis [Term] id: CL:1000507 name: kidney tubule cell namespace: cell xref: KUPO:0001020 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0001231 ! nephron tubule [Term] id: CL:1000510 name: kidney glomerular epithelial cell namespace: cell xref: KUPO:0001023 is_a: CL:0002518 ! kidney epithelial cell relationship: part_of UBERON:0004188 ! glomerular epithelium [Term] id: CL:1000546 name: kidney medulla collecting duct epithelial cell namespace: cell xref: KUPO:0001060 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0005185 ! renal medulla collecting duct [Term] id: CL:1000547 name: kidney inner medulla collecting duct epithelial cell namespace: cell xref: KUPO:0001061 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0005187 ! inner renal medulla collecting duct [Term] id: CL:1000548 name: kidney outer medulla collecting duct epithelial cell namespace: cell xref: KUPO:0001062 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0005186 ! outer renal medulla collecting duct [Term] id: CL:1000549 name: kidney cortex collecting duct epithelial cell namespace: cell xref: KUPO:0001063 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0005267 ! renal cortex collecting duct [Term] id: CL:1000550 name: kidney papillary duct principal epithelial cell namespace: cell xref: KUPO:0001064 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0005167 ! papillary duct [Term] id: CL:1000596 name: inner renal cortex cell namespace: cell xref: KUPO:0001111 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0005271 ! juxtamedullary cortex [Term] id: CL:1000597 name: papillary tips cell namespace: cell xref: KUPO:0001112 is_a: CL:1000497 ! kidney cell relationship: part_of UBERON:0009095 ! tip of renal papilla [Term] id: CL:1000600 name: lower urinary tract cell namespace: cell xref: KUPO:0001115 is_a: CL:0000548 ! animal cell relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: CL:1000601 name: ureteral cell namespace: cell xref: KUPO:0001116 is_a: CL:0000548 ! animal cell relationship: part_of UBERON:0000056 ! ureter [Term] id: CL:1000606 name: kidney nerve cell namespace: cell xref: KUPO:0001015 is_a: CL:0000540 ! neuron is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000612 name: kidney corpuscule cell namespace: cell xref: KUPO:0001021 is_a: CL:0002584 ! renal cortical epithelial cell relationship: part_of UBERON:0001229 ! renal corpuscle [Term] id: CL:1000615 name: kidney cortex tubule cell namespace: cell xref: KUPO:0001024 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000507 ! kidney tubule cell relationship: part_of UBERON:0006853 ! renal cortex tubule [Term] id: CL:1000616 name: kidney outer medulla cell namespace: cell xref: KUPO:0001025 is_a: CL:1000504 ! kidney medulla cell relationship: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: CL:1000617 name: kidney inner medulla cell namespace: cell xref: KUPO:0001026 is_a: CL:1000504 ! kidney medulla cell relationship: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: CL:1000618 name: juxtaglomerular complex cell namespace: cell xref: KUPO:0001028 is_a: CL:0002681 ! kidney cortical cell relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus [Term] id: CL:1000681 name: kidney cortex interstitial cell namespace: cell xref: KUPO:0001091 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000500 ! kidney interstitial cell relationship: part_of UBERON:0005270 ! renal cortex interstitium [Term] id: CL:1000682 name: kidney medulla interstitial cell namespace: cell xref: KUPO:0001092 is_a: CL:1000500 ! kidney interstitial cell is_a: CL:1000504 ! kidney medulla cell relationship: part_of UBERON:0005211 ! renal medulla interstitium [Term] id: CL:1000691 name: kidney interstitial myofibroblast namespace: cell xref: KUPO:0001101 is_a: CL:0000186 ! myofibroblast cell is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000692 name: kidney interstitial fibroblast namespace: cell xref: KUPO:0001102 is_a: CL:0000057 ! fibroblast is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000693 name: kidney interstitial fibrocyte namespace: cell xref: KUPO:0001103 is_a: CL:0000135 ! fibrocyte is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000695 name: kidney interstitial alternatively activated macrophage namespace: cell xref: KUPO:0001106 is_a: CL:0000890 ! alternatively activated macrophage is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000696 name: kidney interstitial inflammatory macrophage namespace: cell xref: KUPO:0001107 is_a: CL:0000863 ! inflammatory macrophage is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000697 name: kidney interstitial suppressor macrophage namespace: cell xref: KUPO:0001108 is_a: CL:0000862 ! suppressor macrophage is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000698 name: kidney resident macrophage namespace: cell xref: KUPO:0001109 is_a: CL:0000864 ! tissue-resident macrophage is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000699 name: kidney resident dendritic cell namespace: cell xref: KUPO:0001110 is_a: CL:0001007 ! interstitial dendritic cell is_a: CL:1000500 ! kidney interstitial cell [Term] id: CL:1000702 name: kidney pelvis smooth muscle cell namespace: cell xref: KUPO:0001113 is_a: CL:0000192 ! smooth muscle cell is_a: CL:1000505 ! kidney pelvis cell relationship: part_of UBERON:0004227 ! kidney pelvis smooth muscle [Term] id: CL:1000703 name: kidney pelvis urothelial cell namespace: cell xref: KUPO:0001114 is_a: CL:0000731 ! urothelial cell is_a: CL:0002518 ! kidney epithelial cell is_a: CL:1000505 ! kidney pelvis cell relationship: part_of UBERON:0004788 ! kidney pelvis urothelium [Term] id: CL:1000706 name: ureter urothelial cell namespace: cell xref: KUPO:0001117 is_a: CL:0000731 ! urothelial cell is_a: CL:1000601 ! ureteral cell relationship: part_of UBERON:0001254 ! urothelium of ureter [Term] id: CL:1000708 name: ureter adventitial cell namespace: cell xref: KUPO:0001119 is_a: CL:0000115 ! endothelial cell is_a: CL:0000134 ! mesenchymal cell is_a: CL:0002503 ! adventitial cell is_a: CL:1000601 ! ureteral cell relationship: part_of UBERON:0001252 ! adventitia of ureter [Term] id: CL:1000714 name: kidney cortex collecting duct principal cell namespace: cell xref: KUPO:0001130 is_a: CL:0005009 ! renal principal cell is_a: CL:1000549 ! kidney cortex collecting duct epithelial cell relationship: part_of UBERON:0005267 ! renal cortex collecting duct [Term] id: CL:1000715 name: kidney cortex collecting duct intercalated cell namespace: cell xref: KUPO:0001131 is_a: CL:0005010 ! renal intercalated cell is_a: CL:1000549 ! kidney cortex collecting duct epithelial cell relationship: part_of UBERON:0005267 ! renal cortex collecting duct [Term] id: CL:1000716 name: kidney outer medulla collecting duct principal cell namespace: cell xref: KUPO:0001132 is_a: CL:0005009 ! renal principal cell is_a: CL:1000548 ! kidney outer medulla collecting duct epithelial cell relationship: part_of UBERON:0005186 ! outer renal medulla collecting duct [Term] id: CL:1000717 name: kidney outer medulla collecting duct intercalated cell namespace: cell xref: KUPO:0001133 is_a: CL:0005010 ! renal intercalated cell is_a: CL:1000548 ! kidney outer medulla collecting duct epithelial cell relationship: part_of UBERON:0005186 ! outer renal medulla collecting duct [Term] id: CL:1000718 name: kidney inner medulla collecting duct principal cell namespace: cell xref: KUPO:0001134 is_a: CL:0005009 ! renal principal cell is_a: CL:1000547 ! kidney inner medulla collecting duct epithelial cell relationship: part_of UBERON:0005187 ! inner renal medulla collecting duct [Term] id: CL:1000719 name: kidney inner medulla collecting duct intercalated cell namespace: cell xref: KUPO:0001135 is_a: CL:0005010 ! renal intercalated cell is_a: CL:1000547 ! kidney inner medulla collecting duct epithelial cell relationship: part_of UBERON:0005187 ! inner renal medulla collecting duct [Term] id: CL:1000720 name: kidney papillary duct intercalated cell namespace: cell xref: KUPO:0001136 is_a: CL:0005010 ! renal intercalated cell is_a: CL:1000550 ! kidney papillary duct principal epithelial cell relationship: part_of UBERON:0005167 ! papillary duct [Term] id: CL:1000721 name: kidney papillary duct principal cell namespace: cell xref: KUPO:0001137 is_a: CL:0005009 ! renal principal cell is_a: CL:1000550 ! kidney papillary duct principal epithelial cell relationship: part_of UBERON:0005167 ! papillary duct [Term] id: CL:1000742 name: glomerular mesangial cell namespace: cell xref: KUPO:0001032 is_a: CL:0000650 ! mesangial cell is_a: CL:1000612 ! kidney corpuscule cell relationship: part_of UBERON:0002320 ! glomerular mesangium [Term] id: CL:1000746 name: glomerular cell namespace: cell xref: KUPO:0001036 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000612 ! kidney corpuscule cell relationship: part_of UBERON:0000074 ! renal glomerulus [Term] id: CL:1000768 name: kidney connecting tubule epithelial cell namespace: cell xref: KUPO:0001058 is_a: CL:1000494 ! epithelial cell of renal tubule is_a: CL:1000615 ! kidney cortex tubule cell relationship: part_of UBERON:0005097 ! connecting tubule [Term] id: CL:1000803 name: kidney inner medulla interstitial cell namespace: cell xref: KUPO:0001093 is_a: CL:1000617 ! kidney inner medulla cell is_a: CL:1000682 ! kidney medulla interstitial cell relationship: part_of UBERON:0005214 ! inner renal medulla interstitium [Term] id: CL:1000804 name: kidney outer medulla interstitial cell namespace: cell xref: KUPO:0001094 is_a: CL:1000616 ! kidney outer medulla cell is_a: CL:1000682 ! kidney medulla interstitial cell relationship: part_of UBERON:0005213 ! outer renal medulla interstitium [Term] id: CL:1000838 name: kidney proximal convoluted tubule epithelial cell namespace: cell xref: KUPO:0001045 is_a: CL:0002306 ! epithelial cell of proximal tubule is_a: CL:1000615 ! kidney cortex tubule cell relationship: part_of UBERON:0001287 ! proximal convoluted tubule [Term] id: CL:1000839 name: kidney proximal straight tubule epithelial cell namespace: cell xref: KUPO:0001046 is_a: CL:0002306 ! epithelial cell of proximal tubule is_a: CL:1000615 ! kidney cortex tubule cell is_a: CL:1000616 ! kidney outer medulla cell relationship: part_of UBERON:0001290 ! proximal straight tubule [Term] id: CL:1000849 name: kidney distal convoluted tubule epithelial cell namespace: cell xref: KUPO:0001056 is_a: CL:0002305 ! epithelial cell of distal tubule relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] id: CL:1000850 name: macula densa epithelial cell namespace: cell xref: KUPO:0001057 is_a: CL:0002305 ! epithelial cell of distal tubule is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000618 ! juxtaglomerular complex cell relationship: part_of UBERON:0002335 ! macula densa [Term] id: CL:1000854 name: kidney blood vessel cell namespace: cell xref: KUPO:0001014 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000504 ! kidney medulla cell relationship: part_of UBERON:0003517 ! kidney blood vessel [Term] id: CL:1000891 name: kidney arterial blood vessel cell namespace: cell xref: KUPO:0001029 is_a: CL:1000854 ! kidney blood vessel cell relationship: part_of UBERON:0003644 ! kidney arterial blood vessel [Term] id: CL:1000892 name: kidney capillary endothelial cell namespace: cell xref: KUPO:0001030 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:1000854 ! kidney blood vessel cell [Term] id: CL:1000893 name: kidney venous blood vessel cell namespace: cell xref: KUPO:0001031 is_a: CL:1000854 ! kidney blood vessel cell relationship: part_of UBERON:0001140 ! renal vein [Term] id: CL:1000897 name: parietal epithelial cell namespace: cell xref: KUPO:0001035 is_a: CL:1000450 ! epithelial cell of glomerular capsule relationship: part_of UBERON:0005750 ! glomerular parietal epithelium [Term] id: CL:1000909 name: kidney loop of henle epithelial cell namespace: cell xref: KUPO:0001047 is_a: CL:1000494 ! epithelial cell of renal tubule relationship: part_of UBERON:0001288 ! loop of Henle [Term] id: CL:1000979 name: ureter smooth muscle cell namespace: cell xref: KUPO:0001118 is_a: CL:0000192 ! smooth muscle cell is_a: CL:1000601 ! ureteral cell relationship: part_of UBERON:0006855 ! ureter muscle layer [Term] id: CL:1001005 name: glomerular capillary endothelial cell namespace: cell xref: KUPO:0001037 is_a: CL:1000746 ! glomerular cell is_a: CL:1000892 ! kidney capillary endothelial cell relationship: part_of UBERON:0004294 ! glomerular capillary endothelium [Term] id: CL:1001006 name: kidney afferent arteriole cell namespace: cell xref: KUPO:0001038 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000891 ! kidney arterial blood vessel cell relationship: part_of UBERON:0004639 ! afferent arteriole [Term] id: CL:1001009 name: kidney efferent arteriole cell namespace: cell xref: KUPO:0001041 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000891 ! kidney arterial blood vessel cell relationship: part_of UBERON:0004640 ! efferent arteriole [Term] id: CL:1001016 name: kidney loop of henle ascending limb epithelial cell namespace: cell xref: KUPO:0001048 is_a: CL:1000909 ! kidney loop of henle epithelial cell relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle [Term] id: CL:1001021 name: kidney loop of henle descending limb epithelial cell namespace: cell xref: KUPO:0001053 is_a: CL:1000909 ! kidney loop of henle epithelial cell relationship: part_of UBERON:0001289 ! descending limb of loop of Henle [Term] id: CL:1001033 name: peritubular capillary endothelial cell namespace: cell xref: KUPO:0001065 is_a: CL:1000892 ! kidney capillary endothelial cell relationship: part_of UBERON:0005272 ! peritubular capillary [Term] id: CL:1001036 name: vasa recta cell namespace: cell xref: KUPO:0001068 is_a: CL:1000504 ! kidney medulla cell is_a: CL:1000892 ! kidney capillary endothelial cell relationship: part_of UBERON:0004726 ! vasa recta [Term] id: CL:1001045 name: kidney cortex artery cell namespace: cell xref: KUPO:0001077 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000891 ! kidney arterial blood vessel cell relationship: part_of UBERON:0005268 ! renal cortex artery [Term] id: CL:1001052 name: kidney cortex vein cell namespace: cell xref: KUPO:0001084 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000893 ! kidney venous blood vessel cell relationship: part_of UBERON:0005269 ! renal cortex vein [Term] id: CL:1001064 name: kidney artery smooth muscle cell namespace: cell comment: Note that the source of this term is KUPO:0001096 (artery smooth muscle cell), which we believe actually denotes the kidney specific structure. xref: KUPO:0001096 is_a: CL:0000192 ! smooth muscle cell is_a: CL:1000891 ! kidney arterial blood vessel cell [Term] id: CL:1001066 name: kidney arteriole smooth muscle cell namespace: cell comment: Note that the source of this term is KUPO:0001098 (arteriole smooth muscle cell), which we believe actually denotes the kidney specific structure. xref: KUPO:0001098 is_a: CL:0000192 ! smooth muscle cell is_a: CL:1000891 ! kidney arterial blood vessel cell [Term] id: CL:1001068 name: kidney venous system smooth muscle cell namespace: cell comment: Note that the source of this term is KUPO:0001068 (venous system smooth muscle cell), which we believe actually denotes the kidney specific structure. xref: KUPO:0001100 is_a: CL:0000192 ! smooth muscle cell is_a: CL:1000893 ! kidney venous blood vessel cell [Term] id: CL:1001096 name: kidney afferent arteriole endothelial cell namespace: cell xref: KUPO:0001039 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:1000412 ! endothelial cell of arteriole is_a: CL:1001006 ! kidney afferent arteriole cell [Term] id: CL:1001097 name: kidney afferent arteriole smooth muscle cell namespace: cell xref: KUPO:0001040 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1001006 ! kidney afferent arteriole cell is_a: CL:1001066 ! kidney arteriole smooth muscle cell [Term] id: CL:1001099 name: kidney efferent arteriole endothelial cell namespace: cell xref: KUPO:0001042 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:1000412 ! endothelial cell of arteriole is_a: CL:1001009 ! kidney efferent arteriole cell [Term] id: CL:1001100 name: kidney efferent arteriole smooth muscle cell namespace: cell xref: KUPO:0001043 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1001009 ! kidney efferent arteriole cell is_a: CL:1001066 ! kidney arteriole smooth muscle cell [Term] id: CL:1001106 name: kidney loop of henle thick ascending limb epithelial cell namespace: cell xref: KUPO:0001049 is_a: CL:1000504 ! kidney medulla cell is_a: CL:1000615 ! kidney cortex tubule cell is_a: CL:1001016 ! kidney loop of henle ascending limb epithelial cell relationship: part_of UBERON:0001291 ! thick ascending limb of loop of Henle [Term] id: CL:1001107 name: kidney loop of henle thin ascending limb epithelial cell namespace: cell xref: KUPO:0001050 is_a: CL:1001016 ! kidney loop of henle ascending limb epithelial cell relationship: part_of UBERON:0004193 ! loop of Henle ascending limb thin segment [Term] id: CL:1001108 name: kidney loop of henle medullary thick ascending limb epithelial cell namespace: cell xref: KUPO:0001051 is_a: CL:1000616 ! kidney outer medulla cell is_a: CL:1001016 ! kidney loop of henle ascending limb epithelial cell relationship: part_of UBERON:0006376 ! premacula segment of distal straight tubule [Term] id: CL:1001109 name: kidney loop of henle cortical thick ascending limb epithelial cell namespace: cell xref: KUPO:0001052 is_a: CL:1000615 ! kidney cortex tubule cell is_a: CL:1001016 ! kidney loop of henle ascending limb epithelial cell relationship: part_of UBERON:0006854 ! distal straight tubule postmacula segment [Term] id: CL:1001111 name: kidney loop of henle thin descending limb epithelial cell namespace: cell xref: KUPO:0001054 is_a: CL:1000616 ! kidney outer medulla cell is_a: CL:1001021 ! kidney loop of henle descending limb epithelial cell relationship: part_of UBERON:0005096 ! descending thin limb [Term] id: CL:1001123 name: kidney outer medulla peritubular capillary cell namespace: cell xref: KUPO:0001066 is_a: CL:1000616 ! kidney outer medulla cell is_a: CL:1001033 ! peritubular capillary endothelial cell relationship: part_of UBERON:0006341 ! outer renal medulla peritubular capillary [Term] id: CL:1001124 name: kidney cortex peritubular capillary cell namespace: cell xref: KUPO:0001067 is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1001033 ! peritubular capillary endothelial cell relationship: part_of UBERON:0006851 ! renal cortex peritubular capillary [Term] id: CL:1001126 name: inner renal medulla vasa recta cell namespace: cell xref: KUPO:0001069 is_a: CL:1000617 ! kidney inner medulla cell is_a: CL:1001036 ! vasa recta cell relationship: part_of UBERON:0004776 ! inner renal medulla vasa recta [Term] id: CL:1001127 name: outer renal medulla vasa recta cell namespace: cell xref: KUPO:0001070 is_a: CL:1000616 ! kidney outer medulla cell is_a: CL:1001036 ! vasa recta cell relationship: part_of UBERON:0004775 ! outer renal medulla vasa recta [Term] id: CL:1001131 name: vasa recta ascending limb cell namespace: cell xref: KUPO:0001074 is_a: CL:1001036 ! vasa recta cell relationship: part_of UBERON:0009091 ! vasa recta ascending limb [Term] id: CL:1001135 name: arcuate artery cell namespace: cell xref: KUPO:0001078 is_a: CL:1001045 ! kidney cortex artery cell relationship: part_of UBERON:0001552 ! arcuate artery [Term] id: CL:1001138 name: interlobular artery cell namespace: cell xref: KUPO:0001081 is_a: CL:1001045 ! kidney cortex artery cell relationship: part_of UBERON:0004723 ! interlobular artery [Term] id: CL:1001142 name: arcuate vein cell namespace: cell xref: KUPO:0001085 is_a: CL:1001052 ! kidney cortex vein cell relationship: part_of UBERON:0004719 ! arcuate vein [Term] id: CL:1001145 name: interlobular vein cell namespace: cell xref: KUPO:0001088 is_a: CL:1001052 ! kidney cortex vein cell relationship: part_of UBERON:0005168 ! interlobular vein [Term] id: CL:1001209 name: inner medulla vasa recta ascending limb cell namespace: cell xref: KUPO:0001075 is_a: CL:1001126 ! inner renal medulla vasa recta cell is_a: CL:1001131 ! vasa recta ascending limb cell relationship: part_of UBERON:0009092 ! inner medulla vasa recta ascending limb [Term] id: CL:1001210 name: outer medulla vasa recta ascending limb cell namespace: cell xref: KUPO:0001076 is_a: CL:1001127 ! outer renal medulla vasa recta cell is_a: CL:1001131 ! vasa recta ascending limb cell relationship: part_of UBERON:0009093 ! outer medulla vasa recta ascending limb [Term] id: CL:1001213 name: arcuate artery endothelial cell namespace: cell xref: KUPO:0001079 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:1000413 ! endothelial cell of artery is_a: CL:1001135 ! arcuate artery cell [Term] id: CL:1001214 name: arcuate artery smooth muscle cell namespace: cell xref: KUPO:0001080 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1001064 ! kidney artery smooth muscle cell is_a: CL:1001135 ! arcuate artery cell [Term] id: CL:1001216 name: interlobulary artery endothelial cell namespace: cell xref: KUPO:0001082 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:1000413 ! endothelial cell of artery is_a: CL:1001138 ! interlobular artery cell [Term] id: CL:1001217 name: interlobulary artery smooth muscle cell namespace: cell xref: KUPO:0001083 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1001064 ! kidney artery smooth muscle cell is_a: CL:1001138 ! interlobular artery cell [Term] id: CL:1001220 name: arcuate vein endothelial cell namespace: cell xref: KUPO:0001086 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:0002543 ! vein endothelial cell is_a: CL:1001142 ! arcuate vein cell [Term] id: CL:1001221 name: arcuate vein smooth muscle cell namespace: cell xref: KUPO:0001087 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1001068 ! kidney venous system smooth muscle cell is_a: CL:1001142 ! arcuate vein cell [Term] id: CL:1001223 name: interlobulary vein endothelial cell namespace: cell xref: KUPO:0001089 is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:0002543 ! vein endothelial cell is_a: CL:1001145 ! interlobular vein cell [Term] id: CL:1001224 name: interlobulary vein smooth muscle cell namespace: cell xref: KUPO:0001090 is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:1001068 ! kidney venous system smooth muscle cell is_a: CL:1001145 ! interlobular vein cell [Term] id: CL:1001225 name: kidney collecting duct cell namespace: cell xref: KUPO:0001012 is_a: CL:1000497 ! kidney cell [Term] id: CL:1001285 name: vasa recta descending limb cell namespace: cell xref: KUPO:0001071 is_a: CL:1001036 ! vasa recta cell relationship: part_of UBERON:0009202 ! vasa recta descending limb [Term] id: CL:1001286 name: inner medulla vasa recta descending limb cell namespace: cell xref: KUPO:0001072 is_a: CL:1001126 ! inner renal medulla vasa recta cell is_a: CL:1001285 ! vasa recta descending limb cell relationship: part_of UBERON:0009089 ! inner medulla vasa recta descending limb [Term] id: CL:1001287 name: outer medulla vasa recta descending limb cell namespace: cell xref: KUPO:0001073 is_a: CL:1001127 ! outer renal medulla vasa recta cell is_a: CL:1001285 ! vasa recta descending limb cell relationship: part_of UBERON:0009090 ! outer medulla vasa recta descending limb [Term] id: CL:1001318 name: renal interstitial pericyte namespace: cell xref: KUPO:0001104 is_a: CL:0000669 ! pericyte cell [Term] id: CL:1001319 name: bladder cell namespace: cell xref: KUPO:0001120 is_a: CL:0000548 ! animal cell relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: CL:1001320 name: urethra cell namespace: cell xref: KUPO:0001123 is_a: CL:0000548 ! animal cell relationship: part_of UBERON:0000057 ! urethra [Term] id: CL:1001428 name: bladder urothelial cell namespace: cell xref: KUPO:0001121 is_a: CL:0000731 ! urothelial cell is_a: CL:1001319 ! bladder cell relationship: part_of UBERON:0004645 ! urinary bladder urothelium [Term] id: CL:1001430 name: urethra urothelial cell namespace: cell xref: KUPO:0001124 is_a: CL:0000731 ! urothelial cell is_a: CL:1001320 ! urethra cell relationship: part_of UBERON:0004787 ! urethra urothelium [Term] id: CL:1001431 name: kidney collecting duct principal cell namespace: cell xref: KUPO:0001128 is_a: CL:0005009 ! renal principal cell is_a: CL:1000454 ! kidney collecting duct epithelial cell relationship: part_of UBERON:0001232 ! collecting duct of renal tubule [Term] id: CL:1001432 name: kidney collecting duct intercalated cell namespace: cell xref: KUPO:0001129 is_a: CL:0005010 ! renal intercalated cell is_a: CL:1000454 ! kidney collecting duct epithelial cell relationship: part_of UBERON:0001232 ! collecting duct of renal tubule [Term] id: CL:1001433 name: epithelial cell of exocrine pancreas namespace: cell def: "An epithelial cell of the exocrine pancreas." [GOC:tfm] synonym: "exocrine pancreas cell" EXACT [] xref: FMA:70986 is_a: CL:0000083 ! epithelial cell of pancreas [Term] id: GO:0000323 name: lytic vacuole namespace: cellular_component def: "A vacuole that is maintained at an acidic pH and which contains degradative enzymes, including a wide variety of acid hydrolases." [GOC:krc] is_a: GO:0005773 ! vacuole property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000785 name: chromatin namespace: cellular_component alt_id: GO:0005717 def: "The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome." [GOC:elh, PMID:20404130] synonym: "chromosome scaffold" RELATED [] xref: NIF_Subcellular:sao1615953555 is_a: GO:0044427 ! chromosomal part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000791 name: euchromatin namespace: cellular_component def: "A dispersed and relatively uncompacted form of chromatin." [GOC:elh] xref: NIF_Subcellular:sao445485807 xref: Wikipedia:Euchromatin is_a: GO:0000785 ! chromatin property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0000792 name: heterochromatin namespace: cellular_component def: "A compact and highly condensed form of chromatin." [GOC:elh] xref: NIF_Subcellular:sao581845896 xref: Wikipedia:Heterochromatin is_a: GO:0000785 ! chromatin property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001750 name: photoreceptor outer segment namespace: cellular_component def: "The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes." [ISBN:0824072820] is_a: GO:0031513 ! nonmotile primary cilium property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0001917 name: photoreceptor inner segment namespace: cellular_component def: "The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs." [GOC:add, PMID:12019563] subset: goslim_pir ! PIR GO slim is_a: UBERON:0000470 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005575 name: cellular_component namespace: cellular_component alt_id: GO:0008372 def: "The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together." [GOC:go_curators] comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cellular component" EXACT [] synonym: "cellular component unknown" NARROW [] xref: NIF_Subcellular:sao1337158144 disjoint_from: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005576 name: extracellular region namespace: cellular_component def: "The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite." [GOC:go_curators] comment: Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "extracellular" EXACT [] xref: Wikipedia:Extracellular is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005578 name: proteinaceous extracellular matrix namespace: cellular_component def: "A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus." [GOC:mtg_sensu, ISBN:0198547684] subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim is_a: GO:0031012 ! extracellular matrix is_a: GO:0044421 ! extracellular region part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005581 name: collagen namespace: cellular_component def: "Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures." [GOC:mah, ISBN:0721639976] synonym: "other collagen" RELATED [] xref: Wikipedia:Collagen is_a: GO:0044420 ! extracellular matrix part relationship: part_of GO:0005578 ! proteinaceous extracellular matrix property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005583 name: fibrillar collagen namespace: cellular_component def: "Any collagen polymer in which collagen triple helices associate to form fibrils." [GOC:mah, ISBN:0721639976] is_a: GO:0005581 ! collagen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005584 name: collagen type I namespace: cellular_component def: "A collagen trimer containing alpha(I) chains. The most common form of type I collagen is a heterotrimer containing two alpha1(I) chains and one alpha2(I) chain; homotrimers containing three alpha1(I) chains are also found. Type I collagen triple helices associate to form banded fibrils." [GOC:mah, GOC:sl, ISBN:0721639976] xref: Wikipedia:Collagen_type_I is_a: GO:0005583 ! fibrillar collagen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005586 name: collagen type III namespace: cellular_component def: "A collagen homotrimer of alpha1(III) chains; type III collagen triple helices associate to form fibrils." [ISBN:0721639976] is_a: GO:0005583 ! fibrillar collagen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005615 name: extracellular space namespace: cellular_component def: "That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid." [ISBN:0198547684] comment: Note that for multicellular organisms, the extracellular space refers to everything outside a cell, but still within the organism (excluding the extracellular matrix). Gene products from a multi-cellular organism that are secreted from a cell into the interstitial fluid or blood can therefore be annotated to this term. subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim synonym: "intercellular space" RELATED [] xref: NIF_Subcellular:sao1425028079 is_a: GO:0044421 ! extracellular region part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005622 name: intracellular namespace: cellular_component def: "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [ISBN:0198506732] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "internal to cell" EXACT [] synonym: "nucleocytoplasm" RELATED [GOC:mah] synonym: "protoplasm" EXACT [] synonym: "protoplast" RELATED [GOC:mah] xref: Wikipedia:Intracellular is_a: UBERON:0000470 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005634 name: nucleus namespace: cellular_component def: "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." [GOC:go_curators] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim synonym: "cell nucleus" EXACT [] xref: NIF_Subcellular:sao1702920020 xref: Wikipedia:Cell_nucleus is_a: GO:0043231 ! intracellular membrane-bounded organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005694 name: chromosome namespace: cellular_component def: "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information." [ISBN:0198547684] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "chromatid" RELATED [] synonym: "interphase chromosome" NARROW [] synonym: "prophase chromosome" NARROW [] xref: Wikipedia:Chromosome is_a: GO:0043232 ! intracellular non-membrane-bounded organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005730 name: nucleolus namespace: cellular_component def: "A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome." [ISBN:0198506732] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim xref: NIF_Subcellular:sao1820400233 xref: Wikipedia:Nucleolus is_a: GO:0043232 ! intracellular non-membrane-bounded organelle is_a: GO:0044428 ! nuclear part relationship: part_of GO:0031981 ! nuclear lumen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005737 name: cytoplasm namespace: cellular_component def: "All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." [ISBN:0198547684] subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Wikipedia:Cytoplasm is_a: GO:0044424 ! intracellular part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005764 name: lysosome namespace: cellular_component def: "A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions." [GOC:mah, ISBN:0198506732] subset: goslim_generic ! Generic GO slim subset: goslim_plant ! Plant GO slim xref: NIF_Subcellular:sao585356902 xref: Wikipedia:Lysosome is_a: GO:0000323 ! lytic vacuole property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005766 name: primary lysosome namespace: cellular_component def: "A lysosome before it has fused with a vesicle or vacuole." [GOC:jl, ISBN:0815316194] xref: NIF_Subcellular:sao1140587416 is_a: GO:0005764 ! lysosome property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005773 name: vacuole namespace: cellular_component def: "A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol." [GOC:mtg_sensu, ISBN:0198506732] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "vacuolar carboxypeptidase Y" RELATED [] xref: Wikipedia:Vacuole is_a: GO:0043231 ! intracellular membrane-bounded organelle is_a: GO:0044444 ! cytoplasmic part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005794 name: Golgi apparatus namespace: cellular_component def: "A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions." [ISBN:0198506732] comment: Note that the Golgi apparatus can be located in various places in the cytoplasm. In plants and lower animal cells, the Golgi apparatus exists as many copies of discrete stacks dispersed throughout the cytoplasm, while the Golgi apparatus of interphase mammalian cells is a juxtanuclear, often pericentriolar reticulum, where the discrete Golgi stacks are stitched together to form a compact and interconnected ribbon, sometimes called the Golgi ribbon. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim synonym: "Golgi" BROAD [] synonym: "Golgi complex" EXACT [] synonym: "Golgi ribbon" NARROW [] xref: NIF_Subcellular:sao451912436 xref: Wikipedia:Golgi_apparatus is_a: GO:0043231 ! intracellular membrane-bounded organelle is_a: GO:0044444 ! cytoplasmic part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005840 name: ribosome namespace: cellular_component alt_id: GO:0033279 def: "An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins." [ISBN:0198506732] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "ribosomal RNA" RELATED [] xref: NIF_Subcellular:sao1429207766 xref: Wikipedia:Ribosome is_a: GO:0030529 ! ribonucleoprotein complex is_a: GO:0043232 ! intracellular non-membrane-bounded organelle is_a: GO:0044444 ! cytoplasmic part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005886 name: plasma membrane namespace: cellular_component alt_id: GO:0005904 def: "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." [ISBN:0716731363] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "bacterial inner membrane" NARROW [] synonym: "cell membrane" EXACT [] synonym: "cytoplasmic membrane" EXACT [] synonym: "inner endospore membrane" NARROW [] synonym: "juxtamembrane" BROAD [] synonym: "plasma membrane lipid bilayer" NARROW [GOC:mah] synonym: "plasmalemma" EXACT [] xref: NIF_Subcellular:sao1663586795 xref: Wikipedia:Cell_membrane is_a: GO:0016020 ! membrane relationship: part_of GO:0071944 ! cell periphery property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005887 name: integral to plasma membrane namespace: cellular_component def: "Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0016021 ! integral to membrane is_a: GO:0031226 ! intrinsic to plasma membrane property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005902 name: microvillus namespace: cellular_component def: "Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells." [ISBN:0813516194] comment: Note that this term refers to a projection from a single cell, and should not be confused with 'microvillus' as used to refer to a multicellular structure such as that found in the placenta. subset: goslim_pir ! PIR GO slim xref: Wikipedia:Microvillus is_a: GO:0042995 ! cell projection property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005911 name: cell-cell junction namespace: cellular_component def: "A cell junction that forms a connection between two cells; excludes direct cytoplasmic junctions such as ring canals." [GOC:dgh, GOC:hb, GOC:mah] synonym: "intercellular junction" EXACT [] xref: NIF_Subcellular:sao1922892319 is_a: GO:0030054 ! cell junction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005929 name: cilium namespace: cellular_component def: "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole." [GOC:kmv, ISBN:0198547684] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim xref: NIF_Subcellular:sao787716553 xref: Wikipedia:Cilium is_a: GO:0042995 ! cell projection property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0012505 name: endomembrane system namespace: cellular_component def: "A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles." [GOC:lh] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_yeast ! Yeast GO slim xref: Wikipedia:Endomembrane_system is_a: UBERON:0000470 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0012506 name: vesicle membrane namespace: cellular_component def: "The lipid bilayer surrounding any membrane-bounded vesicle in the cell." [GOC:mah] xref: NIF_Subcellular:sao1153182838 is_a: GO:0031090 ! organelle membrane relationship: part_of GO:0012505 ! endomembrane system relationship: part_of GO:0031988 ! membrane-bounded vesicle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016020 name: membrane namespace: cellular_component def: "Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." [GOC:mah, ISBN:0815316194] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Wikipedia:Biological_membrane is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016021 name: integral to membrane namespace: cellular_component def: "Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "transmembrane" RELATED [GOC:mah] xref: Wikipedia:Transmembrane_protein is_a: GO:0031224 ! intrinsic to membrane property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016023 name: cytoplasmic membrane-bounded vesicle namespace: cellular_component def: "A membrane-bounded vesicle found in the cytoplasm of the cell." [GOC:ai, GOC:mah] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cytoplasmic membrane bounded vesicle" EXACT [] synonym: "cytoplasmic membrane-enclosed vesicle" EXACT [] is_a: GO:0031410 ! cytoplasmic vesicle is_a: GO:0031988 ! membrane-bounded vesicle is_a: GO:0043231 ! intracellular membrane-bounded organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019814 name: immunoglobulin complex namespace: cellular_component def: "A protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, GOC:jl, ISBN:0781765196] comment: Note that an immunoglobulin complex has the function of antigen binding if a suitable antigen is available. subset: goslim_pir ! PIR GO slim is_a: GO:0043234 ! protein complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0019815 name: B cell receptor complex namespace: cellular_component alt_id: GO:0042570 def: "An immunoglobulin complex that is present in the plasma membrane of B cells and that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins." [GOC:add, ISBN:0781735149] comment: Note that an immunoglobulin complex has the function of antigen binding if a suitable antigen is available. synonym: "B cell receptor accessory molecule complex" RELATED [] synonym: "B lymphocyte receptor complex" EXACT [] synonym: "B-cell receptor complex" EXACT [] synonym: "B-lymphocyte receptor complex" EXACT [] synonym: "BCR complex" EXACT [] synonym: "antibody" RELATED [GOC:mah] synonym: "immunoglobulin complex, membrane bound" EXACT [] is_a: GO:0019814 ! immunoglobulin complex is_a: GO:0043235 ! receptor complex is_a: GO:0044459 ! plasma membrane part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030054 name: cell junction namespace: cellular_component def: "A plasma membrane part that forms a specialized region of connection between two cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix." [GOC:mah, ISBN:0198506732, http://www.vivo.colostate.edu/hbooks/cmb/cells/pmemb/junctions_a.html] xref: Wikipedia:Cell_junction is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030141 name: secretory granule namespace: cellular_component def: "A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules." [GOC:mah, ISBN:0198596732] comment: Note that the term 'secretory vesicle' is sometimes used in this sense, but can also mean 'transport vesicle ; GO:0030133'. synonym: "secretory vesicle" BROAD [] is_a: GO:0016023 ! cytoplasmic membrane-bounded vesicle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030424 name: axon namespace: cellular_component def: "The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter." [GOC:nln, ISBN:0198506732] xref: NIF_Subcellular:sao1770195789 xref: Wikipedia:Axon is_a: UBERON:0001024 ! neurite property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030529 name: ribonucleoprotein complex namespace: cellular_component def: "A macromolecular complex containing both protein and RNA molecules." [GOC:krc] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "RNA-protein complex" EXACT [] synonym: "RNP" EXACT [] synonym: "protein-RNA complex" EXACT [] synonym: "ribonucleoprotein" EXACT [] xref: Wikipedia:Ribonucleoprotein is_a: GO:0032991 ! macromolecular complex is_a: GO:0044424 ! intracellular part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030659 name: cytoplasmic vesicle membrane namespace: cellular_component def: "The lipid bilayer surrounding a cytoplasmic vesicle." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0012506 ! vesicle membrane is_a: GO:0044433 ! cytoplasmic vesicle part relationship: part_of GO:0016023 ! cytoplasmic membrane-bounded vesicle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0030667 name: secretory granule membrane namespace: cellular_component def: "The lipid bilayer surrounding a secretory granule." [GOC:mah] synonym: "secretory vesicle membrane" BROAD [] is_a: GO:0030659 ! cytoplasmic vesicle membrane relationship: part_of GO:0030141 ! secretory granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031012 name: extracellular matrix namespace: cellular_component def: "A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants)." [GOC:mah] subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Wikipedia:Extracellular_matrix is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031090 name: organelle membrane namespace: cellular_component def: "The lipid bilayer surrounding an organelle." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0016020 ! membrane is_a: GO:0044422 ! organelle part relationship: part_of GO:0043227 ! membrane-bounded organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031224 name: intrinsic to membrane namespace: cellular_component def: "Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached group such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane." [GOC:mah] comment: Note that proteins intrinsic to membranes cannot be removed without disrupting the membrane, e.g. by detergent. subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0044425 ! membrane part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031226 name: intrinsic to plasma membrane namespace: cellular_component def: "Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached group such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0031224 ! intrinsic to membrane is_a: GO:0044459 ! plasma membrane part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031410 name: cytoplasmic vesicle namespace: cellular_component def: "A vesicle formed of membrane or protein, found in the cytoplasm of a cell." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset xref: NIF_Subcellular:sao180601769 is_a: GO:0031982 ! vesicle is_a: GO:0043229 ! intracellular organelle is_a: GO:0044444 ! cytoplasmic part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031513 name: nonmotile primary cilium namespace: cellular_component def: "A primary cilium which contains a variable array of axonemal microtubules but does not contain molecular motors. Nonmotile primary cilia are found on many different cell types and function as sensory organelles that concentrate and organize sensory signaling molecules." [GOC:dgh, GOC:kmv, PMID:17009929, PMID:20144998] synonym: "immotile primary cilium" EXACT [GOC:curators] synonym: "nonmotile primary cilia" EXACT [GOC:curators] synonym: "sensory cilium" EXACT [GOC:curators] is_a: GO:0072372 ! primary cilium property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031974 name: membrane-enclosed lumen namespace: cellular_component def: "The enclosed volume within a sealed membrane or between two sealed membranes. Encompasses the volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear envelope lumen." [GOC:add, GOC:mah] is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031981 name: nuclear lumen namespace: cellular_component def: "The volume enclosed by the nuclear inner membrane." [GOC:mah, GOC:pz] is_a: GO:0044428 ! nuclear part is_a: GO:0070013 ! intracellular organelle lumen property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031982 name: vesicle namespace: cellular_component def: "Any small, fluid-filled, spherical organelle enclosed by membrane or protein." [GOC:mah, GOC:pz] subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: NIF_Subcellular:sao221389602 xref: Wikipedia:Vesicle_(biology) is_a: GO:0043226 ! organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0031988 name: membrane-bounded vesicle namespace: cellular_component def: "Any small, fluid-filled, spherical organelle enclosed by a lipid bilayer." [GOC:mah] subset: gosubset_prok ! Prokaryotic GO subset synonym: "membrane-enclosed vesicle" EXACT [] is_a: GO:0031982 ! vesicle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032991 name: macromolecular complex namespace: cellular_component def: "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which the constituent parts function together." [GOC:mah] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "macromolecule complex" EXACT [] is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032997 name: Fc receptor complex namespace: cellular_component def: "A protein complex composed of a subunit or subunits capable of binding the Fc portion of an immunoglobulin with additional signaling components. The complex functions as a receptor for immunoglobulin." [GOC:add, ISBN:0781735149] subset: goslim_pir ! PIR GO slim synonym: "Fc-receptor complex" EXACT [] synonym: "FcR complex" EXACT [] synonym: "immunoglobulin receptor complex" BROAD [] is_a: GO:0043234 ! protein complex is_a: GO:0044459 ! plasma membrane part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0033001 name: Fc-gamma receptor III complex namespace: cellular_component def: "A protein complex composed of an Fc-gamma RIII alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-epsilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgG." [GOC:add, ISBN:0781735149, PMID:11244038, PMID:12413532] synonym: "FcgRIII complex" EXACT [] synonym: "IgG receptor complex" BROAD [] synonym: "immunoglobulin G receptor complex" BROAD [] is_a: GO:0032997 ! Fc receptor complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0035369 name: pre-B cell receptor complex namespace: cellular_component def: "An immunoglobulin-like complex that is present in at least the plasma membrane of pre-B cells, and that is composed of two identical immunoglobulin heavy chains and two surrogate light chains, each composed of the lambda-5 and VpreB proteins, and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins." [GOC:add, ISBN:0781765196, PMID:16464608, PMID:17306522] comment: Despite its name, the pre-BCR is not a receptor complex, as it appears to provide a low level of signal not dependent on a ligand, but rather simply on correct assembly of the complex as a measure for correct Ig heavy chain recombination and folding. A significant proportion of pre-BCR complexes fail to reach the cell surface, and in some cases may provide their signaling function from the trans-Golgi network or lysosome. synonym: "pre-BCR" EXACT [] is_a: GO:0043234 ! protein complex is_a: GO:0044425 ! membrane part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042101 name: T cell receptor complex namespace: cellular_component def: "A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains." [GOC:mah, ISBN:0781735149] synonym: "T lymphocyte receptor complex" EXACT [] synonym: "T-cell receptor complex" EXACT [] synonym: "T-lymphocyte receptor complex" EXACT [] synonym: "TCR" RELATED [] xref: Wikipedia:T_cell_receptor is_a: GO:0043235 ! receptor complex is_a: GO:0044459 ! plasma membrane part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042105 name: alpha-beta T cell receptor complex namespace: cellular_component def: "A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein." [GOC:mah, ISBN:0781735149] synonym: "alpha-beta T lymphocyte receptor complex" EXACT [] synonym: "alpha-beta T-cell receptor complex" EXACT [] synonym: "alpha-beta T-lymphocyte receptor complex" EXACT [] synonym: "alpha-beta TCR complex" EXACT [] is_a: GO:0042101 ! T cell receptor complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042106 name: gamma-delta T cell receptor complex namespace: cellular_component def: "A T cell receptor complex in which the TCR heterodimer comprises gamma and delta chains, associated with the CD3 complex; recognizes antigen directly, without a requirement for processing and presentation by an MHC protein." [GOC:mah, ISBN:0781735149] synonym: "gamma-delta T lymphocyte receptor complex" EXACT [] synonym: "gamma-delta T-cell receptor complex" EXACT [] synonym: "gamma-delta T-lymphocyte receptor complex" EXACT [] synonym: "gamma-delta TCR complex" EXACT [] is_a: GO:0042101 ! T cell receptor complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042470 name: melanosome namespace: cellular_component def: "A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells." [GOC:jl, PMID:11584301] xref: Wikipedia:Melanosome is_a: GO:0048770 ! pigment granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042571 name: immunoglobulin complex, circulating namespace: cellular_component def: "An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph. In its canonical form, a circulating immunoglobulin complex is composed of two identical heavy chains and two identical light chains, held together by disulfide bonds. Some forms of are polymers of the basic structure and contain additional components such as J-chain and the secretory component." [GOC:add, ISBN:0781735149] comment: Note that an immunoglobulin complex has the function of antigen binding if a suitable antigen is available. synonym: "antibody" EXACT [GOC:add] xref: Wikipedia:Antibody is_a: GO:0019814 ! immunoglobulin complex is_a: GO:0044421 ! extracellular region part relationship: part_of GO:0005615 ! extracellular space property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042582 name: azurophil granule namespace: cellular_component def: "Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid." [GOC:jl, PMID:17152095] synonym: "primary granule" EXACT [] is_a: GO:0005766 ! primary lysosome is_a: GO:0030141 ! secretory granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042588 name: zymogen granule namespace: cellular_component def: "A membrane-bounded, cytoplasmic secretory granule found in enzyme-secreting cells and visible by light microscopy. Contain zymogen, an inactive enzyme precursor, often of a digestive enzyme." [GOC:jl, ISBN:0198506732] is_a: GO:0030141 ! secretory granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042589 name: zymogen granule membrane namespace: cellular_component def: "The lipid bilayer surrounding a zymogen granule." [GOC:jl] is_a: GO:0030667 ! secretory granule membrane relationship: part_of GO:0042588 ! zymogen granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042611 name: MHC protein complex namespace: cellular_component def: "A transmembrane protein complex composed of an MHC alpha chain and, in most cases, either an MHC class II beta chain or an invariant beta2-microglobin chain, and with or without a bound peptide, lipid, or polysaccharide antigen." [GOC:add, GOC:jl, ISBN:0781735149, PMID:15928678, PMID:16153240] subset: goslim_pir ! PIR GO slim is_a: GO:0043234 ! protein complex is_a: GO:0044459 ! plasma membrane part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042613 name: MHC class II protein complex namespace: cellular_component def: "A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen." [GOC:add, GOC:jl, ISBN:0120781859, PMID:15928678] is_a: GO:0042611 ! MHC protein complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042995 name: cell projection namespace: cellular_component def: "A prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "cell process" BROAD [] synonym: "cellular process" BROAD [] synonym: "cellular projection" EXACT [] is_a: UBERON:0000470 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043226 name: organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." [GOC:go_curators] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: NIF_Subcellular:sao1539965131 xref: Wikipedia:Organelle is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043227 name: membrane-bounded organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "membrane-enclosed organelle" EXACT [] xref: NIF_Subcellular:sao414196390 is_a: GO:0043226 ! organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043228 name: non-membrane-bounded organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes." [GOC:go_curators] subset: gosubset_prok ! Prokaryotic GO subset synonym: "non-membrane-enclosed organelle" EXACT [] xref: NIF_Subcellular:sao1456184038 is_a: GO:0043226 ! organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043229 name: intracellular organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:go_curators] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0043226 ! organelle is_a: GO:0044424 ! intracellular part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043231 name: intracellular membrane-bounded organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "intracellular membrane-enclosed organelle" EXACT [] is_a: GO:0043227 ! membrane-bounded organelle is_a: GO:0043229 ! intracellular organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043232 name: intracellular non-membrane-bounded organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes." [GOC:go_curators] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "intracellular non-membrane-enclosed organelle" EXACT [] is_a: GO:0043228 ! non-membrane-bounded organelle is_a: GO:0043229 ! intracellular organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043233 name: organelle lumen namespace: cellular_component def: "The internal volume enclosed by the membranes of a particular organelle; includes the volume enclosed by a single organelle membrane, e.g. endoplasmic reticulum lumen, or the volume enclosed by the innermost of the two lipid bilayers of an organelle envelope, e.g. nuclear lumen." [GOC:jl, GOC:mah] is_a: GO:0031974 ! membrane-enclosed lumen is_a: GO:0044422 ! organelle part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043234 name: protein complex namespace: cellular_component def: "Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or other small molecules." [GOC:go_curators] subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "protein-protein complex" EXACT [] xref: Wikipedia:Protein_complex is_a: GO:0032991 ! macromolecular complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043235 name: receptor complex namespace: cellular_component def: "Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." [GOC:go_curators] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0043234 ! protein complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043384 name: pre-T cell receptor complex namespace: cellular_component def: "A receptor complex found on immature T cells consisting of a T cell receptor beta chain and the pre-TCR-alpha chain, along with additional signaling components including CD3 family members and additional signaling proteins." [ISBN:0781735149, PMID:12220932] synonym: "pre-T lymphocyte receptor complex" EXACT [] synonym: "pre-T-cell receptor complex" EXACT [] synonym: "pre-T-lymphocyte receptor complex" EXACT [] synonym: "pre-TCR complex" EXACT [] is_a: GO:0043235 ! receptor complex is_a: GO:0044459 ! plasma membrane part relationship: part_of GO:0005887 ! integral to plasma membrane property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044297 name: cell body namespace: cellular_component def: "The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections." [GOC:go_curators] comment: Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections. subset: goslim_pir ! PIR GO slim synonym: "cell soma" EXACT [] is_a: UBERON:0000470 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044420 name: extracellular matrix part namespace: cellular_component def: "Any constituent part of the extracellular matrix, the structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as often seen in plants)." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0005575 ! cellular_component relationship: part_of GO:0031012 ! extracellular matrix property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044421 name: extracellular region part namespace: cellular_component def: "Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0005575 ! cellular_component relationship: part_of GO:0005576 ! extracellular region property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044422 name: organelle part namespace: cellular_component def: "Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0005575 ! cellular_component relationship: part_of GO:0043226 ! organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044424 name: intracellular part namespace: cellular_component def: "Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: UBERON:0000470 ! cell part relationship: part_of GO:0005622 ! intracellular property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044425 name: membrane part namespace: cellular_component def: "Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0005575 ! cellular_component relationship: part_of GO:0016020 ! membrane property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044427 name: chromosomal part namespace: cellular_component def: "Any constituent part of a chromosome, a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "chromosomal component" EXACT [] synonym: "chromosome component" EXACT [] synonym: "chromosome part" EXACT [] is_a: GO:0044446 ! intracellular organelle part relationship: part_of GO:0005694 ! chromosome property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044428 name: nuclear part namespace: cellular_component def: "Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated." [GOC:jl] synonym: "nucleus component" EXACT [] is_a: GO:0044446 ! intracellular organelle part relationship: part_of GO:0005634 ! nucleus property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044433 name: cytoplasmic vesicle part namespace: cellular_component def: "Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0044444 ! cytoplasmic part is_a: GO:0044446 ! intracellular organelle part relationship: part_of GO:0031410 ! cytoplasmic vesicle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044444 name: cytoplasmic part namespace: cellular_component def: "Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset synonym: "cytoplasm component" EXACT [] is_a: GO:0044424 ! intracellular part relationship: part_of GO:0005737 ! cytoplasm property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044446 name: intracellular organelle part namespace: cellular_component def: "A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0044422 ! organelle part is_a: GO:0044424 ! intracellular part relationship: part_of GO:0043229 ! intracellular organelle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0044459 name: plasma membrane part namespace: cellular_component def: "Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." [GOC:jl] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0044425 ! membrane part relationship: part_of GO:0005886 ! plasma membrane property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0048770 name: pigment granule namespace: cellular_component def: "A small, subcellular membrane-bounded vesicle containing pigment and/or pigment precursor molecules. Pigment granule biogenesis is poorly understood, as pigment granules are derived from multiple sources including the endoplasmic reticulum, coated vesicles, lysosomes, and endosomes." [GOC:jid, GOC:mh] is_a: GO:0016023 ! cytoplasmic membrane-bounded vesicle property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070013 name: intracellular organelle lumen namespace: cellular_component def: "An organelle lumen that is part of an intracellular organelle." [GOC:mah] is_a: GO:0043233 ! organelle lumen is_a: GO:0044446 ! intracellular organelle part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070451 name: cell hair namespace: cellular_component def: "A long, thin cell projection that contains F-actin and tubulin, with microtubules centrally located and F-actin peripherally located." [PMID:11526084] subset: goslim_pir ! PIR GO slim synonym: "imaginal disc-derived wing hair" NARROW [GOC:mah] synonym: "non-sensory hair" EXACT [GOC:bf] xref: Wikipedia:Membrane_nanotube is_a: GO:0042995 ! cell projection property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0070820 name: tertiary granule namespace: cellular_component def: "A secretory granule that contains cathepsin and gelatinase and is readily exocytosed upon cell activation; found primarily in mature neutrophil cells." [GOC:BHF, GOC:mah, GOC:rl, PMID:12070036] is_a: GO:0030141 ! secretory granule property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071735 name: IgG immunoglobulin complex namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgG immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196] comment: Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species. synonym: "IgG1" NARROW [GOC:add] synonym: "IgG2" NARROW [GOC:add] synonym: "IgG2a" NARROW [GOC:add] synonym: "IgG2b" NARROW [GOC:add] synonym: "IgG2c" NARROW [GOC:add] synonym: "IgG3" NARROW [GOC:add] synonym: "IgG4" NARROW [GOC:add] is_a: GO:0019814 ! immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071736 name: IgG immunoglobulin complex, circulating namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196] comment: Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species. synonym: "IgG antibody" NARROW [GOC:add] synonym: "IgG1 antibody" NARROW [GOC:add] synonym: "IgG2 antibody" NARROW [GOC:add] synonym: "IgG2a antibody" NARROW [GOC:add] synonym: "IgG2b antibody" NARROW [GOC:add] synonym: "IgG2c antibody" NARROW [GOC:add] synonym: "IgG3 antibody" NARROW [GOC:add] synonym: "IgG4 antibody" NARROW [GOC:add] is_a: GO:0042571 ! immunoglobulin complex, circulating is_a: GO:0071735 ! IgG immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071738 name: IgD immunoglobulin complex namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of the IgD isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgD immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:11282392] comment: Note that an IgD immunoglobulin complex has the function of antigen binding if a suitable antigen is available. is_a: GO:0019814 ! immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071739 name: IgD immunoglobulin complex, circulating namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of the IgD isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:11282392] comment: Note that an IgD immunoglobulin complex has the function of antigen binding if a suitable antigen is available. synonym: "IgD antibody" EXACT [GOC:add] is_a: GO:0042571 ! immunoglobulin complex, circulating is_a: GO:0071738 ! IgD immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071742 name: IgE immunoglobulin complex namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of the IgE isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgE immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196] comment: Note that an IgE immunoglobulin complex has the function of antigen binding if a suitable antigen is available. is_a: GO:0019814 ! immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071743 name: IgE immunoglobulin complex, circulating namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of the IgE isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196] comment: Note that an IgE immunoglobulin complex has the function of antigen binding if a suitable antigen is available. synonym: "IgE antibody" EXACT [GOC:add] is_a: GO:0042571 ! immunoglobulin complex, circulating is_a: GO:0071742 ! IgE immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071745 name: IgA immunoglobulin complex namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of the IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and sometimes complexed with J chain or J chain and secretory component. An IgA immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:16362985] comment: Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. synonym: "IgA1 antibody" NARROW [GOC:add] synonym: "IgA2 antibody" NARROW [GOC:add] is_a: GO:0019814 ! immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071746 name: IgA immunoglobulin complex, circulating namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds, sometimes complexed with J chain or J chain and secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:16362985] comment: Note that an IgA immunoglobulin complex has the function of antigen binding if a suitable antigen is available. synonym: "IgA antibody" EXACT [GOC:add] synonym: "IgA1 antibody" NARROW [GOC:add] synonym: "IgA2 antibody" NARROW [GOC:add] is_a: GO:0042571 ! immunoglobulin complex, circulating is_a: GO:0071745 ! IgA immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071753 name: IgM immunoglobulin complex namespace: cellular_component def: "A protein complex composed of two identical immunoglobulin heavy chains of the IgM isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and in its circulating form complexed with J chain in polymeric forms. An IgM immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:20176268] comment: Note that an IgM immunoglobulin complex has the function of antigen binding if a suitable antigen is available. is_a: GO:0019814 ! immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071754 name: IgM immunoglobulin complex, circulating namespace: cellular_component def: "A polymer of five or six IgM core units each composed of two identical immunoglobulin heavy chains of the IgM isotype and two identical immunoglobulin light chains, held together by disulfide bonds; the individual IgM core units are held together via disulfide bonds with a single J chain polypeptide acting as a bridge between two of the polymeric units. Circulating IgM is present in the extracellular space, in mucosal areas or other tissues, or in the blood or lymph." [GOC:add, ISBN:0781765196, PMID:20176268] comment: Note that an IgM immunoglobulin complex has the function of antigen binding if a suitable antigen is available. synonym: "IgM antibody" EXACT [GOC:add] is_a: GO:0042571 ! immunoglobulin complex, circulating is_a: GO:0071753 ! IgM immunoglobulin complex property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071944 name: cell periphery namespace: cellular_component def: "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures." [GOC:mah] is_a: UBERON:0000470 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0071953 name: elastic fiber namespace: cellular_component def: "An extracellular matrix part that consists of an insoluble core of polymerized tropoelastin monomers and a surrounding mantle of microfibrils. Elastic fibers provide elasticity and recoiling to tissues and organs, and maintain structural integrity against mechanical strain." [GOC:BHF, GOC:mah, PMID:20236620] synonym: "elastic fibre" EXACT [GOC:mah] synonym: "elastin fiber" EXACT [GOC:BHF] is_a: GO:0044420 ! extracellular matrix part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0072372 name: primary cilium namespace: cellular_component def: "A cilium found on many different cell types that is typically present in a single copy per cell. A primary cilium may have a variable array of axonemal microtubules and may or may not contain molecular motors." [GOC:curators, PMID:17009929, PMID:20144998] is_a: GO:0005929 ! cilium property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: CHEBI:17029 name: chitin namespace: chebi_ontology alt_id: CHEBI:13962 alt_id: CHEBI:23099 alt_id: CHEBI:3596 def: "An aminoglycan consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues." [] synonym: "(1->4)-2-acetamido-2-deoxy-beta-D-glucan" EXACT IUPAC_NAME [IUPAC] synonym: "C16H28N2O11.(C8H13NO5)n" RELATED FORMULA [ChEBI] synonym: "Chitin" EXACT [KEGG_COMPOUND] synonym: "InChI=1S/C24H41N3O16/c1-7(31)25-13-18(36)20(11(5-29)39-22(13)38)42-24-15(27-9(3)33)19(37)21(12(6-30)41-24)43-23-14(26-8(2)32)17(35)16(34)10(4-28)40-23/h10-24,28-30,34-38H,4-6H2,1-3H3,(H,25,31)(H,26,32)(H,27,33)/t10-,11-,12-,13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23+,24+/m1/s1" RELATED InChI [ChEBI] synonym: "InChIKey=WZZVUHWLNMNWLW-VFCSDQTKSA-N" RELATED InChIKey [ChEBI] synonym: "[1,4-(N-Acetyl-beta-D-glucosaminyl)]n" RELATED [KEGG_COMPOUND] synonym: "[4)-beta-D-GlcpNAc(1->]n" RELATED [IUPAC] synonym: "beta-1,4-Poly-N-acetyl-D-glucosamine" RELATED [KEGG_COMPOUND] synonym: "chitin" EXACT [IUPAC, UniProt] is_a: CHEBI:21638 ! N-acylglucosamine is_a: CHEBI:22506 ! aminoglycan property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:17089 name: glycoprotein namespace: chebi_ontology alt_id: CHEBI:14349 alt_id: CHEBI:5481 alt_id: CHEBI:5493 def: "A compound in which a carbohydrate component is covalently bound to a protein component." [] synonym: "Glycoprotein" EXACT [KEGG_COMPOUND] synonym: "Glykoprotein" RELATED [ChEBI] synonym: "Glykoproteine" RELATED [ChEBI] synonym: "[glycoprotein]" RELATED [UniProt] synonym: "glicoproteina" RELATED [ChEBI] synonym: "glicoproteinas" RELATED [ChEBI] synonym: "glycoproteine" RELATED [ChEBI] synonym: "glycoproteines" RELATED [ChEBI] synonym: "glycoproteins" EXACT IUPAC_NAME [IUPAC] is_a: CHEBI:33837 ! conjugated protein is_a: CHEBI:63299 ! carbohydrate derivative property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:18085 name: glycosaminoglycan namespace: chebi_ontology alt_id: CHEBI:14361 alt_id: CHEBI:24398 alt_id: CHEBI:5495 def: "Any polysaccharide containing a substantial proportion of aminomonosaccharide residues." [] synonym: "Glycosaminoglycan" EXACT [KEGG_COMPOUND] synonym: "Glykosaminoglykan" RELATED [ChEBI] synonym: "glicosaminoglicano" RELATED [IUPAC] synonym: "glycosaminoglycan" EXACT IUPAC_NAME [IUPAC, UniProt] synonym: "glycosaminoglycane" RELATED [IUPAC] synonym: "glycosaminoglycans" RELATED [ChEBI] is_a: CHEBI:22506 ! aminoglycan property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:18154 name: polysaccharide namespace: chebi_ontology alt_id: CHEBI:14864 alt_id: CHEBI:26205 alt_id: CHEBI:8322 def: "A macromolecule consisting of large numbers of monosaccharide residues linked glycosidically. This term is commonly used only for those containing more than ten monosaccharide residues." [] synonym: "Glycan" RELATED [KEGG_COMPOUND] synonym: "Glycane" RELATED [ChEBI] synonym: "Glykan" RELATED [ChEBI] synonym: "Glykane" RELATED [ChEBI] synonym: "Polysaccharide" EXACT [KEGG_COMPOUND] synonym: "glycans" RELATED [IUPAC] synonym: "polisacarido" RELATED [ChEBI] synonym: "polisacaridos" RELATED [IUPAC] synonym: "polysaccharide" EXACT [UniProt] synonym: "polysaccharides" EXACT IUPAC_NAME [IUPAC] is_a: CHEBI:33694 ! biomacromolecule is_a: CHEBI:63299 ! carbohydrate derivative property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:21638 name: N-acylglucosamine namespace: chebi_ontology synonym: "N-acylglucosamine" EXACT [ChEBI] synonym: "N-acylglucosamines" RELATED [ChEBI] is_a: CHEBI:21656 ! N-acyl-hexosamine is_a: CHEBI:24271 ! glucosamines property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:21656 name: N-acyl-hexosamine namespace: chebi_ontology synonym: "N-acyl-hexosamine" EXACT [ChEBI] synonym: "N-acyl-hexosamines" RELATED [ChEBI] is_a: CHEBI:24586 ! hexosamine property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:22506 name: aminoglycan namespace: chebi_ontology synonym: "aminoglycans" RELATED [ChEBI] is_a: CHEBI:18154 ! polysaccharide property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:22985 name: calcium molecular entity namespace: chebi_ontology synonym: "calcium compounds" RELATED [ChEBI] synonym: "calcium molecular entities" RELATED [ChEBI] synonym: "calcium molecular entity" EXACT [ChEBI] is_a: CHEBI:33299 ! alkaline earth molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:23016 name: carbonates namespace: chebi_ontology is_a: CHEBI:36963 ! organooxygen compound property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:23367 name: molecular entity namespace: chebi_ontology def: "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity." [] synonym: "entidad molecular" RELATED [IUPAC] synonym: "entidades moleculares" RELATED [IUPAC] synonym: "entite moleculaire" RELATED [IUPAC] synonym: "molecular entities" RELATED [IUPAC] synonym: "molecular entity" EXACT IUPAC_NAME [IUPAC] synonym: "molekulare Entitaet" RELATED [ChEBI] is_a: CHEBI:24431 ! chemical entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:24271 name: glucosamines namespace: chebi_ontology is_a: CHEBI:24586 ! hexosamine property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:24431 name: chemical entity namespace: chebi_ontology def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:24586 name: hexosamine namespace: chebi_ontology def: "Any 6-carbon amino monosaccharide with at least one alcoholic hydroxy group replaced by an amino group." [] synonym: "hexosamine" EXACT [ChEBI] synonym: "hexosamines" RELATED [ChEBI] is_a: CHEBI:60926 ! amino monosaccharide property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:24651 name: hydroxides namespace: chebi_ontology def: "Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-))." [] is_a: CHEBI:25806 ! oxygen molecular entity is_a: CHEBI:33608 ! hydrogen molecular entity is_a: CHEBI:37577 ! heteroatomic molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:24866 name: salt namespace: chebi_ontology def: "A salt is an assembly of cations and anions." [] synonym: "Salz" RELATED [ChEBI] synonym: "Salze" RELATED [ChEBI] synonym: "ionic compound" RELATED [ChEBI] synonym: "ionic compounds" RELATED [ChEBI] synonym: "sal" RELATED [ChEBI] synonym: "sales" RELATED [ChEBI] synonym: "salt" EXACT IUPAC_NAME [IUPAC] synonym: "salts" RELATED [ChEBI] synonym: "sel" RELATED [ChEBI] synonym: "sels" RELATED [ChEBI] is_a: CHEBI:37577 ! heteroatomic molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:25179 name: melanin namespace: chebi_ontology alt_id: CHEBI:6727 is_a: CHEBI:26195 ! polyphenol property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:25806 name: oxygen molecular entity namespace: chebi_ontology synonym: "oxygen molecular entities" RELATED [ChEBI] synonym: "oxygen molecular entity" EXACT [ChEBI] is_a: CHEBI:33304 ! chalcogen molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:26195 name: polyphenol namespace: chebi_ontology def: "Any of the group of vegetable chemical substances, characterized by the presence of more than one phenolic group." [] synonym: "polyphenols" RELATED [ChEBI] is_a: CHEBI:33822 ! organic hydroxy compound property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:28963 name: amino sugar namespace: chebi_ontology alt_id: CHEBI:22481 alt_id: CHEBI:22530 alt_id: CHEBI:2662 def: "Any sugar having one or more alcoholic hydroxy groups replaced by substituted or unsubstituted amino groups." [] synonym: "Aminosugars" RELATED [KEGG_COMPOUND] synonym: "amino sugars" RELATED [ChEBI] synonym: "aminosugar" RELATED [ChEBI] is_a: CHEBI:63299 ! carbohydrate derivative property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:3311 name: calcium carbonate namespace: chebi_ontology def: "A carbonate salt that has formula CO3.Ca." [] synonym: "CCaO3" RELATED FORMULA [ChEBI] synonym: "CO3.Ca" RELATED FORMULA [KEGG_COMPOUND] synonym: "CaCO3" RELATED [IUPAC] synonym: "Calcium carbonate" EXACT [KEGG_COMPOUND] synonym: "Calciumcarbonat" RELATED [ChEBI] synonym: "InChI=1S/CH2O3.Ca/c2-1(3)4;/h(H2,2,3,4);/q;+2/p-2" RELATED InChI [ChEBI] synonym: "InChIKey=VTYYLEPIZMXCLO-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] synonym: "Kalziumkarbonat" RELATED [ChEBI] synonym: "[Ca++].[O-]C([O-])=O" RELATED SMILES [ChEBI] synonym: "calcium carbonate" EXACT IUPAC_NAME [IUPAC] synonym: "calcium carbonate (1:1)" RELATED [ChemIDplus] synonym: "calcium trioxidocarbonate" EXACT IUPAC_NAME [IUPAC] synonym: "carbonate de calcium" RELATED [ChEBI] synonym: "carbonato de calcio" RELATED [ChEBI] synonym: "carbonic acid calcium salt (1:1)" RELATED [ChemIDplus] synonym: "kohlensaurer Kalk" RELATED [ChEBI] is_a: CHEBI:35156 ! calcium salt is_a: CHEBI:46721 ! carbonate salt property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33285 name: heteroorganic entity namespace: chebi_ontology def: "A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms." [] synonym: "heteroorganic entities" RELATED [ChEBI] synonym: "organoelement compounds" RELATED [ChEBI] is_a: CHEBI:50860 ! organic molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33299 name: alkaline earth molecular entity namespace: chebi_ontology def: "An alkaline earth molecular entity is a molecular entity containing one or more atoms of an alkaline earth metal." [] synonym: "alkaline earth compounds" RELATED [ChEBI] synonym: "alkaline earth molecular entities" RELATED [ChEBI] synonym: "alkaline earth molecular entity" EXACT [ChEBI] synonym: "alkaline-earth compounds" RELATED [ChEBI] is_a: CHEBI:33674 ! s-block molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33304 name: chalcogen molecular entity namespace: chebi_ontology def: "Any p-block molecular entity containing a chalcogen." [] synonym: "chalcogen compounds" RELATED [ChEBI] synonym: "chalcogen molecular entities" RELATED [ChEBI] synonym: "chalcogen molecular entity" EXACT [ChEBI] is_a: CHEBI:33675 ! p-block molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33579 name: main group molecular entity namespace: chebi_ontology def: "A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table." [] synonym: "main group compounds" RELATED [ChEBI] synonym: "main group molecular entities" RELATED [ChEBI] is_a: CHEBI:23367 ! molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33582 name: carbon group molecular entity namespace: chebi_ontology synonym: "carbon group molecular entities" RELATED [ChEBI] synonym: "carbon group molecular entity" EXACT [ChEBI] is_a: CHEBI:33675 ! p-block molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33608 name: hydrogen molecular entity namespace: chebi_ontology synonym: "hydrogen compounds" RELATED [ChEBI] synonym: "hydrogen molecular entities" RELATED [ChEBI] is_a: CHEBI:33674 ! s-block molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33674 name: s-block molecular entity namespace: chebi_ontology def: "An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element." [] synonym: "s-block compounds" RELATED [ChEBI] synonym: "s-block molecular entities" RELATED [ChEBI] synonym: "s-block molecular entity" EXACT [ChEBI] is_a: CHEBI:33579 ! main group molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33675 name: p-block molecular entity namespace: chebi_ontology def: "A p-block molecular entity is a molecular entity containing one or more atoms of a p-block element." [] synonym: "p-block compounds" RELATED [ChEBI] synonym: "p-block molecular entities" RELATED [ChEBI] synonym: "p-block molecular entitiy" RELATED [ChEBI] is_a: CHEBI:33579 ! main group molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33694 name: biomacromolecule namespace: chebi_ontology def: "A macromolecule formed by a living organism." [] synonym: "Biopolymere" RELATED [ChEBI] synonym: "biomacromolecules" RELATED [ChEBI] synonym: "biopolymer" EXACT IUPAC_NAME [IUPAC] synonym: "biopolymers" RELATED [ChEBI] is_a: CHEBI:33839 ! macromolecule is_a: CHEBI:50860 ! organic molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33695 name: information biomacromolecule namespace: chebi_ontology synonym: "genetically encoded biomacromolecules" RELATED [ChEBI] synonym: "genetically encoded biopolymers" RELATED [ChEBI] synonym: "information biomacromolecules" RELATED [ChEBI] synonym: "information biopolymers" RELATED [ChEBI] synonym: "information macromolecule" RELATED [ChEBI] synonym: "information macromolecules" RELATED [ChEBI] is_a: CHEBI:33694 ! biomacromolecule property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33822 name: organic hydroxy compound namespace: chebi_ontology def: "An organic compound having at least one hydroxy group attached to a carbon atom." [] synonym: "hydroxy compounds" EXACT IUPAC_NAME [IUPAC] synonym: "organic hydroxy compounds" RELATED [ChEBI] is_a: CHEBI:24651 ! hydroxides is_a: CHEBI:50860 ! organic molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33837 name: conjugated protein namespace: chebi_ontology def: "Conjugated protein is a protein that contains a non-peptide component, usually in stoichiometric proportion." [] synonym: "complex protein" RELATED [COMe] synonym: "conjugated proteins" EXACT IUPAC_NAME [IUPAC] is_a: CHEBI:36080 ! protein property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:33839 name: macromolecule namespace: chebi_ontology def: "A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [] synonym: "macromolecule" EXACT IUPAC_NAME [IUPAC] synonym: "macromolecules" RELATED [ChEBI] synonym: "polymer" RELATED [ChEBI] synonym: "polymer molecule" RELATED [IUPAC] synonym: "polymers" RELATED [ChEBI] is_a: CHEBI:36357 ! polyatomic entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:35156 name: calcium salt namespace: chebi_ontology synonym: "Kalziumsalz" RELATED [ChEBI] synonym: "Kalziumsalze" RELATED [ChEBI] synonym: "calcium salts" RELATED [ChEBI] is_a: CHEBI:22985 ! calcium molecular entity is_a: CHEBI:36364 ! alkaline earth salt property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:36080 name: protein namespace: chebi_ontology alt_id: CHEBI:13677 alt_id: CHEBI:14911 def: "A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome." [] synonym: "[protein]" RELATED [UniProt] synonym: "proteins" EXACT IUPAC_NAME [IUPAC] is_a: CHEBI:33695 ! information biomacromolecule property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:36357 name: polyatomic entity namespace: chebi_ontology def: "Any molecular entity consisting of more than one atom." [] synonym: "polyatomic entities" RELATED [ChEBI] is_a: CHEBI:23367 ! molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:36364 name: alkaline earth salt namespace: chebi_ontology synonym: "alkaline earth salts" RELATED [ChEBI] is_a: CHEBI:24866 ! salt is_a: CHEBI:33299 ! alkaline earth molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:36962 name: organochalcogen compound namespace: chebi_ontology def: "An organochalcogen compound is a compound containing at least one carbon-chalcogen bond." [] synonym: "organochalcogen compound" EXACT [ChEBI] synonym: "organochalcogen compounds" RELATED [ChEBI] is_a: CHEBI:33285 ! heteroorganic entity is_a: CHEBI:33304 ! chalcogen molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:36963 name: organooxygen compound namespace: chebi_ontology def: "An organochalcogen compound containing at least one carbon-oxygen bond." [] synonym: "organooxygen compound" EXACT [ChEBI] synonym: "organooxygen compounds" RELATED [ChEBI] is_a: CHEBI:25806 ! oxygen molecular entity is_a: CHEBI:36962 ! organochalcogen compound property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:37395 name: mucopolysaccharide namespace: chebi_ontology alt_id: CHEBI:25425 alt_id: CHEBI:7011 def: "Any of the group of polysaccharides composed of alternating units from uronic acids and glycosamines, and commonly partially esterified with sulfuric acid." [] synonym: "Mucopolysaccharid" RELATED [ChEBI] synonym: "Mucopolysaccharide" EXACT [KEGG_COMPOUND] synonym: "Mukopolysaccharid" RELATED [ChEBI] synonym: "mucopolisacarido" RELATED [ChEBI] synonym: "mucopolisacaridos" RELATED [IUPAC] synonym: "mucopolysaccharides" EXACT IUPAC_NAME [IUPAC] is_a: CHEBI:18085 ! glycosaminoglycan property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:37577 name: heteroatomic molecular entity namespace: chebi_ontology def: "A molecular entity consisting of two or more chemical elements." [] synonym: "chemical compound" RELATED [ChEBI] synonym: "heteroatomic molecular entities" RELATED [ChEBI] is_a: CHEBI:36357 ! polyatomic entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:46721 name: carbonate salt namespace: chebi_ontology synonym: "carbonate salts" RELATED [ChEBI] is_a: CHEBI:23016 ! carbonates property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:50860 name: organic molecular entity namespace: chebi_ontology alt_id: CHEBI:25700 alt_id: CHEBI:33244 def: "Any molecular entity that contains carbon." [] synonym: "organic compounds" RELATED [ChEBI] synonym: "organic entity" RELATED [ChEBI] synonym: "organic molecular entities" RELATED [ChEBI] is_a: CHEBI:33582 ! carbon group molecular entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:60926 name: amino monosaccharide namespace: chebi_ontology is_a: CHEBI:28963 ! amino sugar property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: CHEBI:63299 name: carbohydrate derivative namespace: chebi_ontology def: "Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds." [] synonym: "carbohydrate derivatives" RELATED [ChEBI] synonym: "derivatised carbohydrate" RELATED [ChEBI] synonym: "derivatised carbohydrates" RELATED [ChEBI] synonym: "derivatized carbohydrate" RELATED [ChEBI] synonym: "derivatized carbohydrates" RELATED [ChEBI] is_a: CHEBI:36963 ! organooxygen compound property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl [Term] id: FBbt:00000000 name: germ layer derivative (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000923 ! germ layer [Term] id: FBbt:00000002 name: tagma (Drosophila) namespace: fly_anatomy.ontology def: "The three main divisions of the whole organism formed from groups of segments." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: FBbt:00057001 ! anterior-posterior subdivision of organism (Drosophila) relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: FBbt:00000005 name: ocular segment (Drosophila) namespace: fly_anatomy.ontology def: "Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ." [FlyBase:FBrf0055841, FlyBase:FBrf0075072] comment: While classically this structure is not considered to be a segment, but rather to be the non-segmental acron - anterior to the first segment, this ontology follows Schmidt-Ott and colleagues (Schmidt-Ott et al., 1994, and Schmidt-Ott and Technau, 1992) in considering it to be the second segment (posterior to the labral segment in the segmenting embryo). This is based on relating gene expression in the early segmenting embryo to the effects of loss of function mutations of these genes on formation of larval head structures. subset: cur ! cur synonym: "acron" RELATED [] is_a: FBbt:00000007 ! procephalic segment (Drosophila) [Term] id: FBbt:00000006 name: head segment (Drosophila) namespace: fly_anatomy.ontology def: "Any segment (FBbt:00000003) that is part of some head (FBbt:00000004)." [FBC:auto_generated_definition, FlyBase:FBrf0075072] subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: UBERON:0000914 ! organismal segment relationship: part_of UBERON:0000033 ! head [Term] id: FBbt:00000007 name: procephalic segment (Drosophila) namespace: fly_anatomy.ontology def: "A segment that is anterior to the gnathal segments." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "cephalic segment" RELATED [] synonym: "pregnathal segment" EXACT [] synonym: "preoral segment" EXACT [] synonym: "procephalon" RELATED [] is_a: FBbt:00000006 ! head segment (Drosophila) [Term] id: FBbt:00000008 name: labral segment (Drosophila) namespace: fly_anatomy.ontology def: "Procephalic segment anterior to the antennal segment. In the adult it bears the clypeo-labrum." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] subset: cur ! cur synonym: "clypeo-labrum" RELATED [] is_a: FBbt:00000007 ! procephalic segment (Drosophila) [Term] id: FBbt:00000009 name: antennal segment (Drosophila) namespace: fly_anatomy.ontology def: "Segment anterior to the intercalary segment. In the adult it bears the antennae." [FBC:DOS] subset: cur ! cur is_a: FBbt:00000007 ! procephalic segment (Drosophila) [Term] id: FBbt:00000010 name: intercalary segment (Drosophila) namespace: fly_anatomy.ontology def: "Most posterior of the procephalic segments. Contains the tritocerebrum." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00000007 ! procephalic segment (Drosophila) [Term] id: FBbt:00000011 name: gnathal segment (Drosophila) namespace: fly_anatomy.ontology def: "The head segments that develop posterior to the embryonic/larval mouth." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "postoral segment" RELATED [] is_a: FBbt:00000006 ! head segment (Drosophila) [Term] id: FBbt:00000012 name: mandibular segment (Drosophila) namespace: fly_anatomy.ontology def: "Most anterior of the gnathal segments." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000011 ! gnathal segment (Drosophila) [Term] id: FBbt:00000013 name: maxillary segment (Drosophila) namespace: fly_anatomy.ontology def: "Second gnathal segment, between the mandibular and labial segments. In the adult, it has a paired apodeme and a paired appendage, the maxillary palpus." [FlyBase:FBrf0007734, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000011 ! gnathal segment (Drosophila) [Term] id: FBbt:00000014 name: labial segment (Drosophila) namespace: fly_anatomy.ontology def: "Most posterior of the gnathal segments. In the adult it bears a pair of fused appendages, the labia, and its ectodermal invaginations give rise to the salivary glands." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00000011 ! gnathal segment (Drosophila) [Term] id: FBbt:00000015 name: thorax (Drosophila) namespace: fly_anatomy.ontology def: "The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00000002 ! tagma (Drosophila) [Term] id: FBbt:00000016 name: thoracic segment (Drosophila) namespace: fly_anatomy.ontology def: "Any segment (FBbt:00000003) that is part of some thorax (FBbt:00000015)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000914 ! organismal segment relationship: part_of FBbt:00000015 ! thorax (Drosophila) [Term] id: FBbt:00000017 name: prothoracic segment (Drosophila) namespace: fly_anatomy.ontology def: "The first (most anterior) segment of the thorax." [FBC:DOS] subset: cur ! cur synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] is_a: FBbt:00000016 ! thoracic segment (Drosophila) relationship: part_of FBbt:00000015 ! thorax (Drosophila) [Term] id: FBbt:00000018 name: mesothoracic segment (Drosophila) namespace: fly_anatomy.ontology def: "The second (middle) segment of the thorax." [FBC:DOS] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] is_a: FBbt:00000016 ! thoracic segment (Drosophila) relationship: part_of FBbt:00000015 ! thorax (Drosophila) [Term] id: FBbt:00000019 name: metathoracic segment (Drosophila) namespace: fly_anatomy.ontology def: "The third (most posterior) segment of the thorax." [FBC:DOS] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] is_a: FBbt:00000016 ! thoracic segment (Drosophila) relationship: part_of FBbt:00000015 ! thorax (Drosophila) [Term] id: FBbt:00000020 name: abdomen (Drosophila) namespace: fly_anatomy.ontology def: "The most posterior of the three tagma (FBbt:00000002)." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00000002 ! tagma (Drosophila) [Term] id: FBbt:00000021 name: abdominal segment (Drosophila) namespace: fly_anatomy.ontology def: "Metameric subdivision of the abdomen." [FBC:SPR] subset: cur ! cur is_a: UBERON:0000914 ! organismal segment relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000022 name: abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a1" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000023 name: abdominal segment 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a2" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000024 name: abdominal segment 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a3" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000025 name: abdominal segment 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a4" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000026 name: abdominal segment 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a5" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000027 name: abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a6" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000028 name: abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a7" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000029 name: abdominal segment 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a8" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000030 name: abdominal segment 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a9" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000031 name: abdominal segment 10 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a10" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000032 name: abdominal segment 11 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a11" RELATED [] is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000033 name: telson (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00057001 ! anterior-posterior subdivision of organism (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000035 name: yolk (Drosophila) namespace: fly_anatomy.ontology def: "The nutritive substance contained in the egg." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000025 ! egg [Term] id: FBbt:00000036 name: yolk granule namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0042718 instead. ds060616. subset: cur ! cur [Term] id: FBbt:00000037 name: lipid droplet (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00000035 ! yolk (Drosophila) [Term] id: FBbt:00000039 name: inner chorionic layer (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007247 ! chorionic layer (Drosophila) [Term] id: FBbt:00000040 name: endochorion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007247 ! chorionic layer (Drosophila) [Term] id: FBbt:00000041 name: exochorion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007247 ! chorionic layer (Drosophila) [Term] id: FBbt:00000043 name: micropyle (Drosophila) namespace: fly_anatomy.ontology def: "A small opening at the anterior pole of the egg through which the spermatozoa enter." [FBC:DOS, FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007248 ! chorionic specialization (Drosophila) relationship: develops_from CL:0000579 ! border follicle cell [Term] id: FBbt:00000044 name: collar (Drosophila) namespace: fly_anatomy.ontology def: "Specialization of the chorion that forms the border of the operculum. The operculum opens during hatching by splitting of the eggshell along the collar." [FBC:DOS] subset: cur ! cur is_a: FBbt:00007248 ! chorionic specialization (Drosophila) [Term] id: FBbt:00000045 name: egg operculum (Drosophila) namespace: fly_anatomy.ontology def: "Specialization of the chorion in the dorsal/anterior of the eggshell. Hatching occurs by splitting of the eggshell around the edge of the operculum, opening a hatch through which the larva can crawl." [FBC:DOS] subset: cur ! cur is_a: FBbt:00007248 ! chorionic specialization (Drosophila) relationship: develops_from CL:0000671 ! centripetally migrating follicle cell [Term] id: FBbt:00000046 name: dorsal appendage (Drosophila) namespace: fly_anatomy.ontology def: "Paired appendage of the eggshell, located on the anterior-dorsal side of the egg, just posterior to the operculum. Functions as a respiratory structures." [FBC:DOS] comment: Note that dorsal appendage structure varies considerably between Drosophilid species. subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "chorionic appendage" EXACT [FlyBase:FBrf0047871] is_a: FBbt:00007248 ! chorionic specialization (Drosophila) [Term] id: FBbt:00000047 name: posterior aeropyle (Drosophila) namespace: fly_anatomy.ontology def: "An acellular anatomical structure at the posterior pole of the eggshell that is postulated to act in respiration. It consists of the imprints of 6-15 small central cells surrounded by the imprints of 10-15 peripheral cells, which can be distinguished from the larger imprints of the main body follicle cells." [FlyBase:FBrf0123036] subset: cur ! cur is_a: FBbt:00007248 ! chorionic specialization (Drosophila) [Term] id: FBbt:00000048 name: pronucleus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000025 ! egg [Term] id: FBbt:00000049 name: male pronucleus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000048 ! pronucleus (Drosophila) [Term] id: FBbt:00000050 name: female pronucleus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000048 ! pronucleus (Drosophila) [Term] id: FBbt:00000051 name: polar body nucleus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000048 ! pronucleus (Drosophila) [Term] id: FBbt:00000053 name: embryonic cortex (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005290 ! pre-blastoderm embryo (Drosophila) relationship: part_of FBbt:00005304 ! blastoderm embryo (Drosophila) relationship: part_of FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00000054 name: cleavage stage embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 1-4." [FBC:DOS] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0000922 ! embryo [Term] id: FBbt:00000055 name: cleavage nucleus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00000054 ! cleavage stage embryo (Drosophila) [Term] id: FBbt:00000056 name: energid (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00000054 ! cleavage stage embryo (Drosophila) [Term] id: FBbt:00000057 name: yolk nucleus (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00005376 ! yolk sac (Drosophila) [Term] id: FBbt:00000058 name: vitellophage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00005376 ! yolk sac (Drosophila) [Term] id: FBbt:00000059 name: mitotic domain (Drosophila) namespace: fly_anatomy.ontology def: "A portion of developing embryonic tissue defined by the simultaneous mitotic division of all of its component cells." [FlyBase:FBrf0049535, FlyBase:FBrf0089570] subset: cur ! cur synonym: "replicative domain" EXACT [FlyBase:FBrf0076117] is_a: UBERON:0000479 ! tissue is_a: UBERON:0002050 ! embryonic structure [Term] id: FBbt:00000060 name: mitotic domain 1 (Drosophila) namespace: fly_anatomy.ontology def: "The first mitotic domain to complete interphase 14 and enter mitosis, doing so approximately 70 minutes after the start of interphase 14. It is located dorsolaterally at the anterior the animal, and is bilaterally symmetric." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-1" EXACT [] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005319 ! stage 7 embryo (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000061 name: mitotic domain 2 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally symmetric mitotic domain that includes ventral cells immediately anterior to the cephalic fold and a contiguous stripe of cells that extends dorsally along the anterior face of the cephalic fold." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-2" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005319 ! stage 7 embryo (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000062 name: mitotic domain 3 (Drosophila) namespace: fly_anatomy.ontology def: "Unpaired mitotic domain that straddles the dorsal midline near the anterior tip of the embryo." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-3" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000063 name: mitotic domain 4 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally symmetric domain occupying the posterior tip of the germ band. Mitosis begins just when germ band elongation starts." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain14-4" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000064 name: mitotic domain 5 (Drosophila) namespace: fly_anatomy.ontology def: "Large, bilaterally paired mitotic domain of the embryo lying on the dorsolateral surface immediately anterior to the cephalic furrow and on the contiguous anterior face of the cephalic furrow." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-5" RELATED [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000065 name: mitotic domain 6 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired mitotic domain predominantly lying on the dorsolateral surface of the embryo, just posterior to the cephalic fold. The domain's anterior margin lies inside the cephalic fold, on its posterior face." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-6" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000066 name: mitotic domain 7 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired mitotic domain of the embryo located wholly within the cephalic fold." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-7" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000067 name: mitotic domain 8 (Drosophila) namespace: fly_anatomy.ontology def: "Unpaired mitotic domain of the embryo located immediately ahead of the 'T' at the anterior end of the ventral furrow, straddling the ventral midline. Along with mitotic domain 9, this domain is distinguished by most of its cells dividing along axes perpendicular to the embryonic surface." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-8" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000068 name: mitotic domain 9 (Drosophila) namespace: fly_anatomy.ontology def: "Large, bilaterally paired mitotic domain located anterior to the cephalic fold, adjacent and ventral to mitotic domain 5. Along with mitotic domain 8, this domain is distinguished by its cells dividing along axes perpendicular to the embryonic surface." [FlyBase:FBrf0049535] subset: cur ! cur synonym: "mitotic domain delta14-9" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000069 name: mitotic domain 10 (Drosophila) namespace: fly_anatomy.ontology def: "The largest of the mitotic domains. Between 55 and 65 minutes after mitosis 14 the cells of this domain invaginate to create the ventral furrow." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-10" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000070 name: mitotic domain 11 (Drosophila) namespace: fly_anatomy.ontology def: "A little after 80mins after mitosis 14, mitosis begins simultaneously in five dorsolateral sites on each side of the embryo." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-11" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000071 name: mitotic domain 12 (Drosophila) namespace: fly_anatomy.ontology def: "Small bilaterally paired mitotic domain of the embryo, located immediately anterior to mitotic domain 4." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-12" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000072 name: mitotic domain 13 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired mitotic domain that, along with mitotic domain 22, forms a pouch-like invagination beneath the posterior tip of the elongating germ band which holds the pole cells. The cells of mitotic domain 13 form a ring around the opening of the pouch." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-13" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000073 name: mitotic domain 14 (Drosophila) namespace: fly_anatomy.ontology def: "In each half of the embryo, this mitotic domain consists of a row of one or two cells wide immediately lateral to the ventral furrow. The two rows of cells that form this domain lie on opposite sides of mitotic domain 10 in the blastoderm-stage embryo, but are brought together at the ventral midline when domain 10 invaginates." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mesectodermal cells" RELATED [FlyBase:FBrf0007732] synonym: "mitotic domain delta14-14" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000074 name: mitotic domain 15 (Drosophila) namespace: fly_anatomy.ontology def: "A mitotic domain region that is approximately 1 cell-wide and surrounds mitotic domains 8 and 23." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-15" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000075 name: mitotic domain 16 (Drosophila) namespace: fly_anatomy.ontology def: "In each half-embryo, mitotic domain 16 comprises 7 small metamerically reiterated clusters of cells. They are located within the engrailed (FBgn0000577) stripes that mark the presumptive abdominal segments 1-7." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-16" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000076 name: mitotic domain 17 (Drosophila) namespace: fly_anatomy.ontology def: "In each half embryo, mitotic domain 17 are found immediately posterior to each of the approximately seven mitotic domain 16 sites, and begin mitosis shortly after these sites. The reiterated members of mitotic domain 17 are seen within the presumptive abdominal interstripe regions defined by engrailed (FBgn0000577) expression." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-17" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000077 name: mitotic domain 18 (Drosophila) namespace: fly_anatomy.ontology def: "Unpaired, chalice-shaped mitotic domain that straddles the dorsal midline, between mitotic domains 1, 3 and 20." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-18" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000078 name: mitotic domain 19 (Drosophila) namespace: fly_anatomy.ontology def: "Along the length of the germ band, this long narrow domain, one or two cells wide, separates mitotic domains A and 11." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-19" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000079 name: mitotic domain 20 (Drosophila) namespace: fly_anatomy.ontology def: "Unpaired mitotic domain on the dorsal midline lying just posterior to mitotic domain 18, and between the paired members of domain B." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-20" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000080 name: mitotic domain 21 (Drosophila) namespace: fly_anatomy.ontology def: "Embedded amongst the ventrolaterally located, asynchronously dividing and ingressing cells of mitotic domain N, are the reiterated clusters of the synchronously dividing mitotic domain 21." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-21" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005323 ! stage 9 embryo (Drosophila) [Term] id: FBbt:00000081 name: mitotic domain 22 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired mitotic domain that, along with mitotic domain 13, forms a pouch-like invagination beneath the posterior tip of the elongating germ band which holds the pole cells." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-22" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005323 ! stage 9 embryo (Drosophila) [Term] id: FBbt:00000082 name: mitotic domain 23 (Drosophila) namespace: fly_anatomy.ontology def: "Small, unpaired mitotic domain which, in the just-cellularized blastoderm, occupies the anterior tip of the embryo." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-23" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005323 ! stage 9 embryo (Drosophila) [Term] id: FBbt:00000083 name: mitotic domain 24 (Drosophila) namespace: fly_anatomy.ontology def: "Small, late-dividing mitotic domain located in the presumptive head, between mitotic domains 2, 5, and 9. When the first domains are entering mitosis, mitotic domain 24 is located on the lip of the cephalic fold, but by the time the cells of this domain divide, the opening of the cephalic fold has repositioned mitotic domain 24 further forwards." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-24" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005323 ! stage 9 embryo (Drosophila) [Term] id: FBbt:00000084 name: mitotic domain 25 (Drosophila) namespace: fly_anatomy.ontology def: "At about 115mins after the onset of mitosis stage 14, the first cells in the ventral territory immediately adjacent to mitotic domain 14, divide. These first dividing cells constitute mitotic domain 25, whose metamerically reiterated members are located amongst the cells of domain M that begin division about 25mins later and will divide asynchronously." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur synonym: "mitotic domain delta14-25" EXACT [FlyBase:FBrf0049535] is_a: FBbt:00000059 ! mitotic domain (Drosophila) relationship: part_of FBbt:00005323 ! stage 9 embryo (Drosophila) [Term] id: FBbt:00000085 name: mitotic domain 26 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000059 ! mitotic domain (Drosophila) [Term] id: FBbt:00000086 name: mitotic domain A (Drosophila) namespace: fly_anatomy.ontology def: "At blastoderm, prior to elongation, domain A is a wide band of cells straddling the dorsal midline and spanning the length of the germ band. Germ band elongation buckles and folds this domain. This domain becomes the amnioserosa." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur is_a: FBbt:00000059 ! mitotic domain (Drosophila) [Term] id: FBbt:00000087 name: mitotic domain B (Drosophila) namespace: fly_anatomy.ontology def: "Mitotic domain B is a paired domain that occupies a wedge-shaped area on the dorsolateral surface of the presumptive head." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur is_a: FBbt:00000059 ! mitotic domain (Drosophila) [Term] id: FBbt:00000088 name: mitotic domain M (Drosophila) namespace: fly_anatomy.ontology def: "Region surrounding the segmentally reiterated mitotic domain 25 cells. Cells of mitotic domain M do not divide with any obvious bilateral symmetry." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur is_a: FBbt:00000059 ! mitotic domain (Drosophila) [Term] id: FBbt:00000089 name: mitotic domain N (Drosophila) namespace: fly_anatomy.ontology def: "Mitotic domain N is the ventrolateral region surrounding mitotic domains 16, 17 and 21." [FlyBase:FBrf0049535] comment: See figure 1 of Foe (1989) for an atlas of mitotic domains. subset: cur ! cur is_a: FBbt:00000059 ! mitotic domain (Drosophila) [Term] id: FBbt:00000090 name: dorsal ridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00016018 ! dorsal ridge primordium (Drosophila) relationship: part_of FBbt:00005327 ! stage 12 embryo (Drosophila) relationship: part_of FBbt:00005328 ! stage 13 embryo (Drosophila) relationship: part_of FBbt:00005330 ! stage 14 embryo (Drosophila) [Term] id: FBbt:00000091 name: pole bud (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: develops_from FBbt:00004891 ! pole plasm (Drosophila) relationship: part_of FBbt:00005305 ! syncytial blastoderm embryo (Drosophila) [Term] id: FBbt:00000094 name: clypeo-labral anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn Cly" RELATED [FBC:ds555] is_a: FBbt:00005413 ! anlage in statu nascendi (Drosophila) relationship: part_of FBbt:01000119 ! anterior ectoderm anlage (Drosophila) [Term] id: FBbt:00000095 name: amnioserosa (Drosophila) namespace: fly_anatomy.ontology def: "A dorsal membrane of the embryo." [FBC:gg] subset: EmbDevSlim ! EmbDevSlim subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from FBbt:00017000 ! amnioserosa primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00000096 name: ventral furrow (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00005318 ! stage 6 embryo (Drosophila) relationship: part_of FBbt:00005319 ! stage 7 embryo (Drosophila) [Term] id: FBbt:00000097 name: cephalic furrow (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00000098 name: anterior transverse furrow (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "anterior lateral fold" RELATED [] is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00005319 ! stage 7 embryo (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000099 name: posterior transverse furrow (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "posterior lateral fold" RELATED [] is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00005319 ! stage 7 embryo (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00000100 name: parasegmental furrow (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00000101 name: metameric furrow (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "intersegmental furrow" RELATED [] is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) [Term] id: FBbt:00000102 name: germ band (Drosophila) namespace: fly_anatomy.ontology def: "The ventral, metameric region of the developing embryonic thorax and abdomen." [FBC:DOS] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) [Term] id: FBbt:00000103 name: germ layer anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00000104 name: mesoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ventral plate" RELATED [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005311 ! stage 5 embryo (Drosophila) [Term] id: FBbt:00000105 name: somatic mesoderm anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00000106 name: visceral mesoderm anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00000109 name: mesectoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "AMesEc" RELATED [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005311 ! stage 5 embryo (Drosophila) [Term] id: FBbt:00000112 name: dorsal ectoderm (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "AdorEc" RELATED [] synonym: "dorEc" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00005428 ! dorsal ectoderm anlage (Drosophila) relationship: part_of FBbt:00007045 ! trunk ectoderm (Drosophila) [Term] id: FBbt:00000114 name: procephalic neurectoderm namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "procephalic neuroectoderm" RELATED [] [Term] id: FBbt:00000116 name: lateral ventral neurectoderm (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076117] subset: cur ! cur synonym: "lateral ventral neuroectoderm" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: FBbt:00000117 name: medial ventral neurectoderm (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076117] subset: cur ! cur synonym: "medial ventral neuroectoderm" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: FBbt:00000118 name: intermediate ventral neurectoderm (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076117] subset: cur ! cur synonym: "intermediate ventral neuroectoderm" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: FBbt:00000119 name: anterior ectoderm (Drosophila) namespace: fly_anatomy.ontology def: "The region of the ectoderm anterior to the cephalic furrow." [FBC:DOS] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:01000119 ! anterior ectoderm anlage (Drosophila) relationship: part_of UBERON:0000924 ! ectoderm [Term] id: FBbt:00000120 name: early stomodeal invagination (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "anterior midgut invagination" RELATED [] synonym: "stomodeal invagination early" EXACT [] is_a: FBbt:00005326 ! stomodeal invagination (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00000121 name: lateral ectoderm (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00007045 ! trunk ectoderm (Drosophila) [Term] id: FBbt:00000122 name: posterior ectoderm (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:01000122 ! posterior ectoderm anlage (Drosophila) relationship: part_of FBbt:00007045 ! trunk ectoderm (Drosophila) [Term] id: FBbt:00000123 name: amnioproctodeal invagination (Drosophila) namespace: fly_anatomy.ontology def: "The posterior invagination of ectoderm that gives rise to part of the digestive system." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "posterior midgut invagination" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00000127 name: head mesoderm (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "HeadMes" RELATED [] synonym: "HeadMesP3" RELATED [] synonym: "P4 HeadMes" RELATED [FBC:ds555] synonym: "head mesoderm P3 primordium" RELATED [] synonym: "head mesoderm primordium P4" RELATED [] synonym: "procephalic mesoderm" RELATED [] is_a: UBERON:0000926 ! mesoderm relationship: develops_from FBbt:00005548 ! head mesoderm anlage (Drosophila) [Term] id: FBbt:00000128 name: trunk mesoderm (Drosophila) namespace: fly_anatomy.ontology def: "The mesoderm of segments T1-A9. It first becomes morphologically distinct during ventral furrow formation. Following invagination during stages 6 and 7, it remains a coherent structure with no morphologically apparent subdivisions, apart from transient metamery during stage 9, until stage 11. It undergoes a number of morphological changes during this period: as its cells divide following invagination, it loses its epithelial integrity and by stage 9 has rearranged into a monolayer of cuboidal cells. A further division happens during stage 10 leading to two distinct layers by stage 11." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "AtrunkMes" RELATED [] synonym: "P2 TrMes" RELATED [FBC:ds555] synonym: "TrMes" RELATED [] is_a: UBERON:0000926 ! mesoderm relationship: develops_from FBbt:00005436 ! trunk mesoderm anlage (Drosophila) [Term] id: FBbt:00000129 name: somatic mesoderm (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00000128 ! trunk mesoderm (Drosophila) [Term] id: FBbt:00000130 name: visceral mesoderm (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00000128 ! trunk mesoderm (Drosophila) [Term] id: FBbt:00000131 name: mesodermal crest (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) relationship: part_of FBbt:00000130 ! visceral mesoderm (Drosophila) [Term] id: FBbt:00000132 name: mesodermal crest of segment T3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) relationship: part_of FBbt:00000131 ! mesodermal crest (Drosophila) [Term] id: FBbt:00000133 name: circular visceral mesoderm namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00000134 name: longitudinal visceral mesoderm namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00000135 name: gonadal mesoderm namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005473 ! gonadal sheath proper primordium (Drosophila) consider: FBbt:00005520 ! fat body/gonad primordium (Drosophila) subset: cur ! cur [Term] id: FBbt:00000137 name: embryonic tagma (Drosophila) namespace: fly_anatomy.ontology def: "Any tagma (FBbt:00000002) that is part of some embryo (FBbt:00000052)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000002 ! tagma (Drosophila) relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00000138 name: parasegment (Drosophila) namespace: fly_anatomy.ontology def: "Metameric unit of a Drosophila embryo whose boundaries are the compartment boundaries that run through the middle of adjacent segments, parallel to the segment boundaries." [FBC:DOS] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00057001 ! anterior-posterior subdivision of organism (Drosophila) relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00000139 name: parasegment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of the mandibular segment and the anterior compartment of the maxillary segment." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000140 name: parasegment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of the maxillary segment and the anterior compartment of the labial segment." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000141 name: parasegment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of the labial segment and the anterior compartment of thoracic segment 1 ." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000142 name: parasegment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of thoracic segment 1 and the anterior compartment of thoracic segment 2 ." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000143 name: parasegment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of thoracic segment 2 and the anterior compartment of thoracic segment 3 ." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000144 name: parasegment 6 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of thoracic segment 3 and the anterior compartment of abdominal segment 1." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000145 name: parasegment 7 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 1 and the anterior compartment of abdominal segment 2." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000146 name: parasegment 8 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 2 and the anterior compartment of abdominal segment 3." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000147 name: parasegment 9 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 3 and the anterior compartment of abdominal segment 4." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000148 name: parasegment 10 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 4 and the anterior compartment of abdominal segment 5." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000149 name: parasegment 11 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 5 and the anterior compartment of abdominal segment 6." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000150 name: parasegment 12 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 6 and the anterior compartment of abdominal segment 7." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000151 name: parasegment 13 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 7 and the anterior compartment of abdominal segment 8." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000152 name: parasegment 14 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 8 and the anterior compartment of abdominal segment 9." [FlyBase:FBrf0043344] subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000153 name: parasegment 15 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic metameric unit comprising the posterior compartment of abdominal segment 9 and the anterior compartment of abdominal segment 10." [FlyBase:FBrf0049804, FlyBase:FBrf0051565, FlyBase:FBrf0089570] comment: Definition added based on definitions for other parasegment definitions. Parasegment 14 is the most posterior parasegment mentioned in the original parasegment paper (Martinez-Arias and Lawrence, 1985), but subsequent papers (e.g.- Celniker et al., 1989, Mlodzik et al., 1990) refer to parasegment 15, and Campos-Ortega and Hartenstein (1997), refer to two parasegments posterior to parasegment 14 defined by homeotic gene expression. subset: cur ! cur is_a: FBbt:00000138 ! parasegment (Drosophila) [Term] id: FBbt:00000156 name: embryonic ocular segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "embryonic acron" RELATED [] is_a: FBbt:00000005 ! ocular segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000157 name: embryonic head segment (Drosophila) namespace: fly_anatomy.ontology def: "Any segment (FBbt:00000003) that is part of some embryonic head (FBbt:00000155)." [FBC:auto_generated_definition, FlyBase:FBrf0075072] subset: cur ! cur is_a: FBbt:00000006 ! head segment (Drosophila) is_a: UBERON:0000928 ! embryonic segment relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000158 name: embryonic procephalic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000007 ! procephalic segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000159 name: embryonic labral segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000008 ! labral segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000160 name: embryonic antennal segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000009 ! antennal segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000161 name: embryonic intercalary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000010 ! intercalary segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000162 name: embryonic gnathal segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000011 ! gnathal segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000163 name: embryonic mandibular segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000012 ! mandibular segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000164 name: embryonic maxillary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000013 ! maxillary segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000165 name: embryonic labial segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000014 ! labial segment (Drosophila) is_a: FBbt:00000157 ! embryonic head segment (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00000166 name: embryonic thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000015 ! thorax (Drosophila) is_a: FBbt:00000137 ! embryonic tagma (Drosophila) relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00000167 name: embryonic thoracic segment (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic segment (FBbt:00000016) that is part of some embryo (FBbt:00000052)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000016 ! thoracic segment (Drosophila) is_a: UBERON:0000928 ! embryonic segment relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00000168 name: embryonic prothoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] is_a: FBbt:00000017 ! prothoracic segment (Drosophila) is_a: FBbt:00000167 ! embryonic thoracic segment (Drosophila) relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) [Term] id: FBbt:00000169 name: embryonic mesothoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] is_a: FBbt:00000018 ! mesothoracic segment (Drosophila) is_a: FBbt:00000167 ! embryonic thoracic segment (Drosophila) relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) [Term] id: FBbt:00000170 name: embryonic metathoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] is_a: FBbt:00000019 ! metathoracic segment (Drosophila) is_a: FBbt:00000167 ! embryonic thoracic segment (Drosophila) relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) [Term] id: FBbt:00000171 name: embryonic abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000020 ! abdomen (Drosophila) is_a: FBbt:00000137 ! embryonic tagma (Drosophila) relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00000172 name: embryonic abdominal segment (Drosophila) namespace: fly_anatomy.ontology def: "Metameric subdivision of the embryonic abdomen." [FBC:SPR] subset: cur ! cur is_a: FBbt:00000021 ! abdominal segment (Drosophila) is_a: UBERON:0000928 ! embryonic segment relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00000173 name: embryonic abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a1" RELATED [] is_a: FBbt:00000022 ! abdominal segment 1 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000174 name: embryonic abdominal segment 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a2" RELATED [] is_a: FBbt:00000023 ! abdominal segment 2 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000175 name: embryonic abdominal segment 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a3" RELATED [] is_a: FBbt:00000024 ! abdominal segment 3 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000176 name: embryonic abdominal segment 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a4" RELATED [] is_a: FBbt:00000025 ! abdominal segment 4 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000177 name: embryonic abdominal segment 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a5" RELATED [] is_a: FBbt:00000026 ! abdominal segment 5 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000178 name: embryonic abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a6" RELATED [] is_a: FBbt:00000027 ! abdominal segment 6 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000179 name: embryonic abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a7" RELATED [] is_a: FBbt:00000028 ! abdominal segment 7 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000180 name: embryonic abdominal segment 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a8" RELATED [] is_a: FBbt:00000029 ! abdominal segment 8 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000181 name: embryonic abdominal segment 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a9" RELATED [] is_a: FBbt:00000030 ! abdominal segment 9 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000182 name: embryonic abdominal segment 10 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a10" RELATED [] is_a: FBbt:00000031 ! abdominal segment 10 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000183 name: embryonic abdominal segment 11 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a11" RELATED [] is_a: FBbt:00000032 ! abdominal segment 11 (Drosophila) is_a: FBbt:00000172 ! embryonic abdominal segment (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) [Term] id: FBbt:00000184 name: embryonic telson (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000033 ! telson (Drosophila) relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00000185 name: embryonic/larval tracheal system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005570 subset: cur ! cur synonym: "larval tracheal system" EXACT [] is_a: UBERON:0005155 ! open tracheal system relationship: develops_from FBbt:00005569 ! presumptive embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00000186 name: embryonic optic lobe primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00000187 name: mesothoracic tracheal primordium (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some mesothoracic segment (FBbt:00000018)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 1" RELATED [] is_a: FBbt:00005037 ! tracheal primordium (Drosophila) relationship: part_of FBbt:00000018 ! mesothoracic segment (Drosophila) [Term] id: FBbt:00000188 name: metathoracic tracheal primordium (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some metathoracic segment (FBbt:00000019)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 2" RELATED [] is_a: FBbt:00005037 ! tracheal primordium (Drosophila) relationship: part_of FBbt:00000019 ! metathoracic segment (Drosophila) [Term] id: FBbt:00000189 name: abdominal tracheal primordium (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment (FBbt:00000021)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005037 ! tracheal primordium (Drosophila) relationship: part_of FBbt:00000021 ! abdominal segment (Drosophila) [Term] id: FBbt:00000190 name: abdominal tracheal primordium 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 1 (FBbt:00000022)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 3" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000022 ! abdominal segment 1 (Drosophila) [Term] id: FBbt:00000191 name: abdominal tracheal primordium 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 2 (FBbt:00000023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 4" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) [Term] id: FBbt:00000192 name: abdominal tracheal primordium 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 3 (FBbt:00000024)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 5" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000024 ! abdominal segment 3 (Drosophila) [Term] id: FBbt:00000193 name: abdominal tracheal primordium 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 4 (FBbt:00000025)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 6" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000025 ! abdominal segment 4 (Drosophila) [Term] id: FBbt:00000194 name: abdominal tracheal primordium 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 5 (FBbt:00000026)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 7" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000026 ! abdominal segment 5 (Drosophila) [Term] id: FBbt:00000195 name: abdominal tracheal primordium 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 6 (FBbt:00000027)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 8" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000027 ! abdominal segment 6 (Drosophila) [Term] id: FBbt:00000196 name: abdominal tracheal primordium 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 7 (FBbt:00000028)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 9" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000028 ! abdominal segment 7 (Drosophila) [Term] id: FBbt:00000197 name: posterior spiracle primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005603 def: "Primordium of the posterior spiracle of the larva. Originates in the posterior half of the lateral ectoderm of abdominal segment 8 during stage 12 as a group of cells that are more basophilic that those surrounding them. It forms a deep groove that fuses with the posterior arm of the tracheal primordium of A8 (tracheal metamere 10)." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 PosSpi" RELATED [FBC:ds555] synonym: "embryonic posterior spiracle" EXACT [] synonym: "posterior spiracle specific anlage" RELATED [] is_a: FBbt:00005599 ! primordium of embryonic/larval spiracle (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00000199 name: mesothoracic tracheal pit (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 1" RELATED [] is_a: FBbt:00000187 ! mesothoracic tracheal primordium (Drosophila) is_a: FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00000200 name: metathoracic tracheal pit (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 2" RELATED [] is_a: FBbt:00000188 ! metathoracic tracheal primordium (Drosophila) is_a: FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00000201 name: abdominal tracheal pit (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal pit of the abdomen." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) is_a: FBbt:00005036 ! tracheal pit (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000202 name: abdominal tracheal pit 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 3" RELATED [] is_a: FBbt:00000190 ! abdominal tracheal primordium 1 (Drosophila) is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) [Term] id: FBbt:00000203 name: abdominal tracheal pit 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 4" RELATED [] is_a: FBbt:00000191 ! abdominal tracheal primordium 2 (Drosophila) is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) [Term] id: FBbt:00000204 name: abdominal tracheal pit 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 5" RELATED [] is_a: FBbt:00000192 ! abdominal tracheal primordium 3 (Drosophila) is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) [Term] id: FBbt:00000205 name: abdominal tracheal pit 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 6" RELATED [] is_a: FBbt:00000193 ! abdominal tracheal primordium 4 (Drosophila) is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) [Term] id: FBbt:00000206 name: abdominal tracheal pit 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 7" RELATED [] is_a: FBbt:00000194 ! abdominal tracheal primordium 5 (Drosophila) is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) [Term] id: FBbt:00000207 name: abdominal tracheal pit 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 8" RELATED [] is_a: FBbt:00000195 ! abdominal tracheal primordium 6 (Drosophila) is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) [Term] id: FBbt:00000208 name: abdominal tracheal pit 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 9" RELATED [] is_a: FBbt:00000196 ! abdominal tracheal primordium 7 (Drosophila) is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) [Term] id: FBbt:00000209 name: abdominal tracheal pit 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal pit 10" RELATED [] is_a: FBbt:00000201 ! abdominal tracheal pit (Drosophila) is_a: FBbt:00007470 ! abdominal tracheal primordium 8 (Drosophila) [Term] id: FBbt:00000210 name: anterior endoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn/A antEndo" RELATED [FBC:ds555] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005435 ! endoderm anlage (Drosophila) [Term] id: FBbt:00000211 name: embryonic/larval trachea (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005575 def: "Larval trachea from their maturation in late embryonic stages, to their degeneration/transformation during metamorphosis." [FBC:DOS] subset: cur ! cur synonym: "larval trachea" EXACT [] is_a: UBERON:0003127 ! open tracheal system trachea relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000212 name: embryonic/larval dorsal trunk (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005577 def: "The main airway of the larval/embryonic tracheal system, linking its metameric units and spanning the length of the animal from the anterior spiracle in the prothoracic segment to the posterior spiracle in A8 on the same side. There are two per larva, left and right." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "DT" RELATED [] synonym: "dorsal longitudinal trunk" RELATED [] synonym: "great lateral trunk" RELATED [] synonym: "larval dorsal trunk" EXACT [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: develops_from FBbt:00017010 ! dorsal trunk primordium (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000213 name: dorsal trunk anterior branch (Drosophila) namespace: fly_anatomy.ontology def: "Anteriorly directed dorsal branch of the tracheal primordium. Fuses to the posterior branch of the dorsal trunk of the tracheal primordium of the next segment anterior to it during stage 14." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "DTa" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00017010 ! dorsal trunk primordium (Drosophila) [Term] id: FBbt:00000214 name: dorsal trunk anterior branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some metathoracic tracheal primordium (FBbt:00000188)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa2" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000188 ! metathoracic tracheal primordium (Drosophila) [Term] id: FBbt:00000215 name: dorsal trunk anterior branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 1 (FBbt:00000190)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa3" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000190 ! abdominal tracheal primordium 1 (Drosophila) [Term] id: FBbt:00000216 name: dorsal trunk anterior branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 2 (FBbt:00000191)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa4" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000191 ! abdominal tracheal primordium 2 (Drosophila) [Term] id: FBbt:00000217 name: dorsal trunk anterior branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 3 (FBbt:00000192)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa5" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000192 ! abdominal tracheal primordium 3 (Drosophila) [Term] id: FBbt:00000218 name: dorsal trunk anterior branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 4 (FBbt:00000193)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa6" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000193 ! abdominal tracheal primordium 4 (Drosophila) [Term] id: FBbt:00000219 name: dorsal trunk anterior branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 5 (FBbt:00000194)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa7" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000194 ! abdominal tracheal primordium 5 (Drosophila) [Term] id: FBbt:00000220 name: dorsal trunk anterior branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 6 (FBbt:00000195)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa8" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000195 ! abdominal tracheal primordium 6 (Drosophila) [Term] id: FBbt:00000221 name: dorsal trunk anterior branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 7 (FBbt:00000196)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa9" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00000196 ! abdominal tracheal primordium 7 (Drosophila) [Term] id: FBbt:00000222 name: dorsal trunk anterior branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk anterior branch (FBbt:00000213) that is part of some abdominal tracheal primordium 8 (FBbt:00007470)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTa10" RELATED [] is_a: FBbt:00000213 ! dorsal trunk anterior branch (Drosophila) relationship: part_of FBbt:00007470 ! abdominal tracheal primordium 8 (Drosophila) [Term] id: FBbt:00000223 name: dorsal trunk posterior branch (Drosophila) namespace: fly_anatomy.ontology def: "Posteriorly directed dorsal branch of the tracheal primordium. Fuses to the anterior branch of the dorsal trunk of the tracheal primordium of the next segment posterior to it during stage 14." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "DTp" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00017010 ! dorsal trunk primordium (Drosophila) [Term] id: FBbt:00000224 name: dorsal trunk posterior branch 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some mesothoracic tracheal primordium (FBbt:00000187)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp1" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000187 ! mesothoracic tracheal primordium (Drosophila) [Term] id: FBbt:00000225 name: dorsal trunk posterior branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some metathoracic tracheal primordium (FBbt:00000188)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp2" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000188 ! metathoracic tracheal primordium (Drosophila) [Term] id: FBbt:00000226 name: dorsal trunk posterior branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some abdominal tracheal primordium 1 (FBbt:00000190)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp3" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000190 ! abdominal tracheal primordium 1 (Drosophila) [Term] id: FBbt:00000227 name: dorsal trunk posterior branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some abdominal tracheal primordium 2 (FBbt:00000191)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp4" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000191 ! abdominal tracheal primordium 2 (Drosophila) [Term] id: FBbt:00000228 name: dorsal trunk posterior branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some abdominal tracheal primordium 3 (FBbt:00000192)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp5" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000192 ! abdominal tracheal primordium 3 (Drosophila) [Term] id: FBbt:00000229 name: dorsal trunk posterior branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some abdominal tracheal primordium 4 (FBbt:00000193)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp6" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000193 ! abdominal tracheal primordium 4 (Drosophila) [Term] id: FBbt:00000230 name: dorsal trunk posterior branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some abdominal tracheal primordium 5 (FBbt:00000194)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp7" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000194 ! abdominal tracheal primordium 5 (Drosophila) [Term] id: FBbt:00000231 name: dorsal trunk posterior branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some abdominal tracheal primordium 6 (FBbt:00000195)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp8" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000195 ! abdominal tracheal primordium 6 (Drosophila) [Term] id: FBbt:00000232 name: dorsal trunk posterior branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal trunk posterior branch (FBbt:00000223) that is part of some abdominal tracheal primordium 7 (FBbt:00000196)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DTp9" RELATED [] is_a: FBbt:00000223 ! dorsal trunk posterior branch (Drosophila) relationship: part_of FBbt:00000196 ! abdominal tracheal primordium 7 (Drosophila) [Term] id: FBbt:00000233 name: embryonic/larval lateral trunk (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005579 def: "Laterally located, embryonic/larval trachea that, like the dorsal trunk, runs the length of the larva from T1 to A8. It is much thinner than the dorsal trunk and follows a jagged path from segment to segment. There are two per larva, left and right." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LT" RELATED [] synonym: "larval lateral trunk" EXACT [] synonym: "lateral longitudinal trunk" RELATED [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000234 name: lateral trunk anterior branch (Drosophila) namespace: fly_anatomy.ontology def: "Anteriorly directed ventral branch of the tracheal primordium that gives rise to the anterior portion of the lateral trunk in each tracheal metamere. It arises as the anterior side of a bifurcation at the ventral end of the tracheal primordium during stage 12. It fuses with posterior branch of the lateral trunk of the next segment to its anterior during stage 14 or 15." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00005578 ! lateral trunk primordium (Drosophila) [Term] id: FBbt:00000235 name: lateral trunk anterior branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some metathoracic tracheal primordium (FBbt:00000188)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa2" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000188 ! metathoracic tracheal primordium (Drosophila) [Term] id: FBbt:00000236 name: lateral trunk anterior branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 1 (FBbt:00000190)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa3" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000190 ! abdominal tracheal primordium 1 (Drosophila) [Term] id: FBbt:00000237 name: lateral trunk anterior branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 2 (FBbt:00000191)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa4" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000191 ! abdominal tracheal primordium 2 (Drosophila) [Term] id: FBbt:00000238 name: lateral trunk anterior branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 3 (FBbt:00000192)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa5" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000192 ! abdominal tracheal primordium 3 (Drosophila) [Term] id: FBbt:00000239 name: lateral trunk anterior branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 4 (FBbt:00000193)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa6" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000193 ! abdominal tracheal primordium 4 (Drosophila) [Term] id: FBbt:00000240 name: lateral trunk anterior branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 5 (FBbt:00000194)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa7" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000194 ! abdominal tracheal primordium 5 (Drosophila) [Term] id: FBbt:00000241 name: lateral trunk anterior branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 6 (FBbt:00000195)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa8" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000195 ! abdominal tracheal primordium 6 (Drosophila) [Term] id: FBbt:00000242 name: lateral trunk anterior branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 7 (FBbt:00000196)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa9" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00000196 ! abdominal tracheal primordium 7 (Drosophila) [Term] id: FBbt:00000243 name: lateral trunk anterior branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk anterior branch (FBbt:00000234) that is part of some abdominal tracheal primordium 8 (FBbt:00007470)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTa10" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000234 ! lateral trunk anterior branch (Drosophila) relationship: part_of FBbt:00007470 ! abdominal tracheal primordium 8 (Drosophila) [Term] id: FBbt:00000244 name: lateral trunk posterior branch (Drosophila) namespace: fly_anatomy.ontology def: "Posteriorly directed ventral branch of the tracheal primordium that gives rise to the posterior portion of the lateral trunk in each tracheal metamere. It arises as the posterior side of a bifurcation at the ventral end of the tracheal primordium during stage 12. It fuses with posterior branch of the lateral trunk of the next segment to its posterior during stage 14 or 15." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00005578 ! lateral trunk primordium (Drosophila) [Term] id: FBbt:00000245 name: lateral trunk posterior branch 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some mesothoracic tracheal primordium (FBbt:00000187)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp1" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000187 ! mesothoracic tracheal primordium (Drosophila) [Term] id: FBbt:00000246 name: lateral trunk posterior branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some metathoracic tracheal primordium (FBbt:00000188)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp2" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000188 ! metathoracic tracheal primordium (Drosophila) [Term] id: FBbt:00000247 name: lateral trunk posterior branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some abdominal tracheal primordium 1 (FBbt:00000190)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp3" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000190 ! abdominal tracheal primordium 1 (Drosophila) [Term] id: FBbt:00000248 name: lateral trunk posterior branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some abdominal tracheal primordium 2 (FBbt:00000191)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp4" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000191 ! abdominal tracheal primordium 2 (Drosophila) [Term] id: FBbt:00000249 name: lateral trunk posterior branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some abdominal tracheal primordium 3 (FBbt:00000192)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp5" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000192 ! abdominal tracheal primordium 3 (Drosophila) [Term] id: FBbt:00000250 name: lateral trunk posterior branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some abdominal tracheal primordium 4 (FBbt:00000193)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp6" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000193 ! abdominal tracheal primordium 4 (Drosophila) [Term] id: FBbt:00000251 name: lateral trunk posterior branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some abdominal tracheal primordium 5 (FBbt:00000194)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp7" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000194 ! abdominal tracheal primordium 5 (Drosophila) [Term] id: FBbt:00000252 name: lateral trunk posterior branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some abdominal tracheal primordium 6 (FBbt:00000195)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp8" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000195 ! abdominal tracheal primordium 6 (Drosophila) [Term] id: FBbt:00000253 name: lateral trunk posterior branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral trunk posterior branch (FBbt:00000244) that is part of some abdominal tracheal primordium 7 (FBbt:00000196)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LTp9" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000244 ! lateral trunk posterior branch (Drosophila) relationship: part_of FBbt:00000196 ! abdominal tracheal primordium 7 (Drosophila) [Term] id: FBbt:00000254 name: embryonic/larval transverse connective (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001923 def: "Embryonic/larval trachea that connects the dorsal and lateral trunks." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "a and b branch" RELATED [] synonym: "larval transverse connective" EXACT [] synonym: "outer segmental trachea" RELATED [] synonym: "ventral segmental trachea" RELATED [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000255 name: transverse connective 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 1 (FBbt:00005026)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC1" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000256 name: transverse connective 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC2" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000257 name: transverse connective 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 3 (FBbt:00005028)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC3" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000258 name: transverse connective 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC4" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000259 name: transverse connective 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC5" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000260 name: transverse connective 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC6" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000261 name: transverse connective 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC7" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000262 name: transverse connective 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC8" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000263 name: transverse connective 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC9" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000264 name: transverse connective 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval transverse connective (FBbt:00000254) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "TC10" RELATED [] is_a: FBbt:00000254 ! embryonic/larval transverse connective (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000265 name: embryonic/larval dorsal branch (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005582 def: "Embryonic/larval trachea that branches dorsally from the dorsal trunk. It tracheates the dorsal epidermis and dorsal vessel. Each dorsal branch connects to the contralateral branch of the same tracheal metamere via the dorsal anastomosis." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "dorsal trachea" RELATED [] synonym: "inner segmental trachea" RELATED [] synonym: "larval dorsal branch" EXACT [] synonym: "small dorsal commissure" RELATED [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000266 name: embryonic/larval dorsal branch 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 1 (FBbt:00005026)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB1" RELATED [] synonym: "dorsal branch 1" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000267 name: embryonic/larval dorsal branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB2" RELATED [] synonym: "dorsal branch 2" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000268 name: embryonic/larval dorsal branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 3 (FBbt:00005028)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB3" RELATED [] synonym: "dorsal branch 3" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000269 name: embryonic/larval dorsal branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB4" RELATED [] synonym: "dorsal branch 4" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000270 name: embryonic/larval dorsal branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB5" RELATED [] synonym: "dorsal branch 5" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000271 name: embryonic/larval dorsal branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB6" RELATED [] synonym: "dorsal branch 6" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000272 name: embryonic/larval dorsal branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB7" RELATED [] synonym: "dorsal branch 7" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000273 name: embryonic/larval dorsal branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB8" RELATED [] synonym: "dorsal branch 8" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000274 name: embryonic/larval dorsal branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB9" RELATED [] synonym: "dorsal branch 9" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000275 name: embryonic/larval dorsal branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal branch (FBbt:00000265) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DB10" RELATED [] synonym: "dorsal branch 10" RELATED [] is_a: FBbt:00000265 ! embryonic/larval dorsal branch (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000276 name: embryonic/larval dorsal anastomosis (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005583 alt_id: FBbt:00005584 def: "Tracheal node that connects the left and right dorsal branches of an embryonic/larval tracheal metamere. Forms during stage 16." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "embryonic dorsal anastomosis" EXACT [] synonym: "larval dorsal anastomosis" NARROW [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00005049 ! tracheal node (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000277 name: dorsal anastomosis 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 2 (FBbt:00005027) and that connected to some embryonic/larval dorsal branch 2 (FBbt:00000267)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA2" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000278 name: dorsal anastomosis 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 3 (FBbt:00005028) and that connected to some embryonic/larval dorsal branch 3 (FBbt:00000268)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA3" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000279 name: dorsal anastomosis 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 4 (FBbt:00005029) and that connected to some embryonic/larval dorsal branch 4 (FBbt:00000269)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA4" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000280 name: dorsal anastomosis 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 5 (FBbt:00005030) and that connected to some embryonic/larval dorsal branch 5 (FBbt:00000270)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA5" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000281 name: dorsal anastomosis 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 6 (FBbt:00005031) and that connected to some embryonic/larval dorsal branch 6 (FBbt:00000271)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA6" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000282 name: dorsal anastomosis 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 7 (FBbt:00005032) and that connected to some embryonic/larval dorsal branch 7 (FBbt:00000272)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA7" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000283 name: dorsal anastomosis 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 8 (FBbt:00005033) and that connected to some embryonic/larval dorsal branch 8 (FBbt:00000273)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA8" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000284 name: dorsal anastomosis 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 9 (FBbt:00005034) and that connected to some embryonic/larval dorsal branch 9 (FBbt:00000274)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA9" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000285 name: embryonic/larval dorsal group branch (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005586 def: "Secondary trachea that branches from the dorsal branch. The number and position of these branches is variable." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG" EXACT [FlyBase:FBrf0064787] synonym: "larval dorsal group branch" NARROW [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007471 ! secondary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000286 name: dorsal group branch 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 1 (FBbt:00005026)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG1" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000287 name: dorsal group branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG2" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000288 name: dorsal group branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 3 (FBbt:00005028)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG3" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000289 name: dorsal group branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG4" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000290 name: dorsal group branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG5" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000291 name: dorsal group branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG6" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000292 name: dorsal group branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG7" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000293 name: dorsal group branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG8" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000294 name: dorsal group branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG9" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000295 name: dorsal group branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal group branch (FBbt:00000285) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DG10" RELATED [] is_a: FBbt:00000285 ! embryonic/larval dorsal group branch (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000296 name: embryonic/larval visceral branch (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005588 def: "Embryonic/larval trachea that branches from a transverse connective and tracheates the viscera." [FlyBase:FBrf0064787] comment: Tracheal metameres 1, 3, 9 and 10 lack visceral branches (Manning and Krasnow, 1993, pg 632). subset: cur ! cur synonym: "intestinal branch" RELATED [] synonym: "k branch" RELATED [] synonym: "larval visceral branch" EXACT [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000297 name: visceral branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval visceral branch (FBbt:00000296) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VB2" RELATED [] is_a: FBbt:00000296 ! embryonic/larval visceral branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000298 name: visceral branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval visceral branch (FBbt:00000296) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VB4" RELATED [] is_a: FBbt:00000296 ! embryonic/larval visceral branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000299 name: visceral branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval visceral branch (FBbt:00000296) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VB5" RELATED [] is_a: FBbt:00000296 ! embryonic/larval visceral branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000300 name: visceral branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval visceral branch (FBbt:00000296) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VB6" RELATED [] is_a: FBbt:00000296 ! embryonic/larval visceral branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000301 name: visceral branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval visceral branch (FBbt:00000296) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VB7" RELATED [] is_a: FBbt:00000296 ! embryonic/larval visceral branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000302 name: visceral branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval visceral branch (FBbt:00000296) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VB8" RELATED [] is_a: FBbt:00000296 ! embryonic/larval visceral branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000303 name: embryonic/larval spiracular branch (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005590 def: "Embryonic/larval trachea that branches from a transverse connective and connects to a spiracle." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "larval spiracular branch" EXACT [] synonym: "spiracular trachea" RELATED [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000304 name: spiracular branch 1 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval trachea that connects to the anterior spiracle." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB1" RELATED [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000305 name: spiracular branch 2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000316 def: "An embryonic larval trachea whose lumen has collapsed, forming a solid cord and that is connected to the non-functional spiracle of T3 and transverse connective 2." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB2" RELATED [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000306 name: spiracular branch 3 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000317 def: "An embryonic larval trachea whose lumen has collapsed, forming a solid cord and that is connected to the non-functional spiracle of A1 and transverse connective 3." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB3" RELATED [] synonym: "non-functional spiracular branch 3" EXACT [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000307 name: spiracular branch 4 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000318 def: "An embryonic larval trachea whose lumen has collapsed, forming a solid cord and that is connected to the non-functional spiracle of A2 and transverse connective 4." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB4" RELATED [] synonym: "non-functional spiracular branch 4" EXACT [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000308 name: spiracular branch 5 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000319 def: "An embryonic larval trachea whose lumen has collapsed, forming a solid cord and that is connected to the non-functional spiracle of A3 and transverse connective 5." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB5" RELATED [] synonym: "non-functional spiracular branch 5" EXACT [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000309 name: spiracular branch 6 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000320 def: "An embryonic larval trachea whose lumen has collapsed, forming a solid cord and that is connected to the non-functional spiracle of A4 and transverse connective 6." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB6" RELATED [] synonym: "non-functional spiracular branch 6" EXACT [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000310 name: spiracular branch 7 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000321 def: "An embryonic larval trachea whose lumen has collapsed, forming a solid cord and that is connected to the non-functional spiracle of A5 and transverse connective 7." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB7" RELATED [] synonym: "non-functional spiracular branch 7" EXACT [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000311 name: spiracular branch 8 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000322 def: "An embryonic larval trachea whose lumen has collapsed, forming a solid cord and that is connected to the non-functional spiracle of A6 and transverse connective 8." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB8" RELATED [] synonym: "non-functional spiracular branch 8" EXACT [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000312 name: spiracular branch 9 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000323 def: "." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB9" RELATED [] synonym: "non-functional spiracular branch 9" EXACT [] is_a: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) is_a: FBbt:00000314 ! non-functional spiracular branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000313 name: spiracular branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval trachea that is the part of the dorsal longitudinal trunk and that runs from its branch point with transverse connective 10 to the spiracular chamber of the posterior spiracle." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "SB10" RELATED [] is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00000212 ! embryonic/larval dorsal trunk (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000314 name: non-functional spiracular branch (Drosophila) namespace: fly_anatomy.ontology def: "A trachea attached to a non-functional spiracle and whose lumen has collapsed, forming a solid cord." [FlyBase:FBrf0011558] subset: cur ! cur synonym: "Palmen's threads" RELATED [] synonym: "collapsed spiracular trachea" EXACT [] synonym: "spiracular thread" EXACT [FlyBase:FBrf0011558] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000315 name: non-functional spiracular branch 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) consider: FBbt:00000314 ! non-functional spiracular branch (Drosophila) comment: This branch does not exist. subset: cur ! cur [Term] id: FBbt:00000324 name: non-functional spiracular branch 10 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000303 ! embryonic/larval spiracular branch (Drosophila) consider: FBbt:00000314 ! non-functional spiracular branch (Drosophila) comment: This branch does not exist. subset: cur ! cur [Term] id: FBbt:00000325 name: embryonic/larval ganglionic branch (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005592 def: "Embryonic/larval trachea that branches from the lateral trunk and which tracheates the ventral nerve cord." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "ganglionic trachea" RELATED [] synonym: "i branch" RELATED [] synonym: "larval ganglionic branch" EXACT [] synonym: "ventral ganglionic branch" RELATED [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000326 name: ganglionic branch 0 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "GB0" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) [Term] id: FBbt:00000327 name: ganglionic branch 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 1 (FBbt:00005026)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB1" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000328 name: ganglionic branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB2" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000329 name: ganglionic branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 3 (FBbt:00005028)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB3" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000330 name: ganglionic branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB4" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000331 name: ganglionic branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB5" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000332 name: ganglionic branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB6" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000333 name: ganglionic branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB7" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000334 name: ganglionic branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB8" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000335 name: ganglionic branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ganglionic branch (FBbt:00000325) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "GB9" RELATED [] is_a: FBbt:00000325 ! embryonic/larval ganglionic branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000336 name: embryonic/larval ventral anastomosis (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005593 alt_id: FBbt:00005594 def: "Tracheal node that connects the left and right ganglionic branches of an embryonic/larval tracheal metamere. Only 3 pairs of ganglionic branches are joined at the midline by a ventral anastomosis: ganglionic branches 0, 1 and 2. Forms during embryonic stage 16." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "embryonic ventral anastomosis" EXACT [] synonym: "larval ventral anastomosis" NARROW [] synonym: "ventral commissure" RELATED [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00005049 ! tracheal node (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000337 name: ventral anastomosis 0 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ventral anastomosis (FBbt:00000336) that connected to some ganglionic branch 0 (FBbt:00000326)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VA0" RELATED [] is_a: FBbt:00000336 ! embryonic/larval ventral anastomosis (Drosophila) [Term] id: FBbt:00000338 name: ventral anastomosis 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ventral anastomosis (FBbt:00000336) that is part of some tracheal metamere 1 (FBbt:00005026) and that connected to some ganglionic branch 1 (FBbt:00000327)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VA1" RELATED [] is_a: FBbt:00000336 ! embryonic/larval ventral anastomosis (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000339 name: ventral anastomosis 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval ventral anastomosis (FBbt:00000336) that is part of some tracheal metamere 2 (FBbt:00005027) and that connected to some ganglionic branch 2 (FBbt:00000328)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "VA2" RELATED [] is_a: FBbt:00000336 ! embryonic/larval ventral anastomosis (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000340 name: embryonic/larval fat body branch (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005596 def: "Embryonic/larval trachea that branches from the transverse connective and tracheates the fat body." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "c branch" RELATED [] synonym: "larval fat body branch" EXACT [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000341 name: fat body branch 1 (Drosophila) namespace: fly_anatomy.ontology def: "Larval trachea that branches from the transverse connective and tracheates the fat body. Develops during the larval stages." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB1" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000342 name: fat body branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 2 (FBbt:00005027) and that connected to some transverse connective 2 (FBbt:00000256)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB2" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000343 name: fat body branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 3 (FBbt:00005028) and that connected to some transverse connective 3 (FBbt:00000257)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB3" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000344 name: fat body branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 4 (FBbt:00005029) and that connected to some transverse connective 4 (FBbt:00000258)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB4" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000345 name: fat body branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 5 (FBbt:00005030) and that connected to some transverse connective 5 (FBbt:00000259)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB5" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000346 name: fat body branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 6 (FBbt:00005031) and that connected to some transverse connective 6 (FBbt:00000260)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB6" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000347 name: fat body branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 7 (FBbt:00005032) and that connected to some transverse connective 7 (FBbt:00000261)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB7" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000348 name: fat body branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 8 (FBbt:00005033) and that connected to some transverse connective 8 (FBbt:00000262)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB8" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000349 name: fat body branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 9 (FBbt:00005034) and that connected to some transverse connective 9 (FBbt:00000263)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB9" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000350 name: fat body branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval fat body branch (FBbt:00000340) that is part of some tracheal metamere 10 (FBbt:00005035) and that connected to some transverse connective 10 (FBbt:00000264)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "FB10" RELATED [] is_a: FBbt:00000340 ! embryonic/larval fat body branch (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000351 name: embryonic/larval lateral group branch (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005598 def: "Branch from the lateral trunk that remains superficial and tracheates the ventral/lateral epidermis and/or musculature." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "larval lateral group branch" EXACT [] is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) is_a: FBbt:00007471 ! secondary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000352 name: lateral E branch (Drosophila) namespace: fly_anatomy.ontology def: "Ventrally directed secondary tracheal branch from the lateral trunk in the anterior of a segment." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE" EXACT [FlyBase:FBrf0064787] synonym: "e branch" RELATED [] is_a: FBbt:00000351 ! embryonic/larval lateral group branch (Drosophila) [Term] id: FBbt:00000353 name: lateral E branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE2" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000354 name: lateral E branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 3 (FBbt:00005028)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE3" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000355 name: lateral E branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE4" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000356 name: lateral E branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE5" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000357 name: lateral E branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE6" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000358 name: lateral E branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE7" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000359 name: lateral E branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE8" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000360 name: lateral E branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE9" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000361 name: lateral E branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral E branch (FBbt:00000352) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LE10" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000352 ! lateral E branch (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000362 name: lateral F branch (Drosophila) namespace: fly_anatomy.ontology def: "Dorsally directed secondary tracheal branch from the lateral trunk in the anterior of a segment." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF" EXACT [FlyBase:FBrf0064787] synonym: "f branch" RELATED [] is_a: FBbt:00000351 ! embryonic/larval lateral group branch (Drosophila) [Term] id: FBbt:00000363 name: lateral F branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF2" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000364 name: lateral F branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 3 (FBbt:00005028)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF3" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000365 name: lateral F branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF4" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000366 name: lateral F branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF5" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000367 name: lateral F branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF6" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000368 name: lateral F branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF7" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000369 name: lateral F branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF8" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000370 name: lateral F branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF9" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000371 name: lateral F branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral F branch (FBbt:00000362) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LF10" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000362 ! lateral F branch (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000372 name: lateral G branch (Drosophila) namespace: fly_anatomy.ontology def: "Secondary trachea that branch from (or close to) the tracheal node where segments of lateral trunk from adjacent metameres fuse. There are 2 or 3 of these per metamere." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG" EXACT [FlyBase:FBrf0064787] synonym: "g branch" RELATED [] is_a: FBbt:00000351 ! embryonic/larval lateral group branch (Drosophila) [Term] id: FBbt:00000373 name: lateral G branch 2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000372 ! lateral G branch (Drosophila) comment: According to Manning and Krasnow, 1993 (FBrf0064787; page 628), no lateral ganglionic branch exists in tracheal metamere 2. subset: cur ! cur synonym: "LG2" RELATED [] [Term] id: FBbt:00000374 name: lateral G branch 3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000372 ! lateral G branch (Drosophila) comment: According to Manning and Krasnow, 1993 (FBrf0064787; page 628), no lateral ganglionic branch exists in tracheal metamere 3. subset: cur ! cur synonym: "LG3" RELATED [] [Term] id: FBbt:00000375 name: lateral G branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral G branch (FBbt:00000372) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG4" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000372 ! lateral G branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000376 name: lateral G branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral G branch (FBbt:00000372) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG5" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000372 ! lateral G branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000377 name: lateral G branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral G branch (FBbt:00000372) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG6" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000372 ! lateral G branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000378 name: lateral G branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral G branch (FBbt:00000372) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG7" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000372 ! lateral G branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000379 name: lateral G branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral G branch (FBbt:00000372) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG8" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000372 ! lateral G branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000380 name: lateral G branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral G branch (FBbt:00000372) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG9" RELATED [] is_a: FBbt:00000372 ! lateral G branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000381 name: lateral G branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral G branch (FBbt:00000372) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LG10" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000372 ! lateral G branch (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000382 name: lateral H branch (Drosophila) namespace: fly_anatomy.ontology def: "Ventrally directed secondary tracheal branch from the lateral trunk in the posterior of a segment." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH" EXACT [FlyBase:FBrf0064787] synonym: "h branch" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000351 ! embryonic/larval lateral group branch (Drosophila) [Term] id: FBbt:00000383 name: lateral H branch 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 2 (FBbt:00005027)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH2" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005027 ! tracheal metamere 2 (Drosophila) [Term] id: FBbt:00000384 name: lateral H branch 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 3 (FBbt:00005028)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH3" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005028 ! tracheal metamere 3 (Drosophila) [Term] id: FBbt:00000385 name: lateral H branch 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 4 (FBbt:00005029)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH4" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005029 ! tracheal metamere 4 (Drosophila) [Term] id: FBbt:00000386 name: lateral H branch 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 5 (FBbt:00005030)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH5" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005030 ! tracheal metamere 5 (Drosophila) [Term] id: FBbt:00000387 name: lateral H branch 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 6 (FBbt:00005031)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH6" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005031 ! tracheal metamere 6 (Drosophila) [Term] id: FBbt:00000388 name: lateral H branch 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 7 (FBbt:00005032)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH7" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005032 ! tracheal metamere 7 (Drosophila) [Term] id: FBbt:00000389 name: lateral H branch 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 8 (FBbt:00005033)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH8" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005033 ! tracheal metamere 8 (Drosophila) [Term] id: FBbt:00000390 name: lateral H branch 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 9 (FBbt:00005034)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH9" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) relationship: part_of FBbt:00005034 ! tracheal metamere 9 (Drosophila) [Term] id: FBbt:00000391 name: lateral H branch 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral H branch (FBbt:00000382) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "LH10" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000382 ! lateral H branch (Drosophila) is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000392 name: tracheal branch of Tr1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval trachea (FBbt:00000211) that is part of some tracheal metamere 1 (FBbt:00005026)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000393 name: cerebropharyngeal branch (Drosophila) namespace: fly_anatomy.ontology def: "Anterodorsally oriented, embryonic/larval trachea that branches from the dorsal trunk in tracheal metamere 1." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "CP" RELATED [] synonym: "dorsal cervical branch" RELATED [] is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000394 name: pharyngeal branch (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval trachea that arises from a bifurcation of the cerebropharyngeal branch and targets (tracheates) the pharynx." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "PB" RELATED [] synonym: "anterior branch of dorsal cervical branch" RELATED [] is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000395 name: cerebral branch (Drosophila) namespace: fly_anatomy.ontology def: "Anteriorly oriented, embryonic/larval trachea that arises from a bifurcation of the cerebropharyngeal branch and targets (tracheates) the brain." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "CB" RELATED [] synonym: "posterior branch of dorsal cervical branch" RELATED [] is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000396 name: cerebral anastomosis (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal node formed by fusion of spurs from the left and right cerebral branches." [FlyBase:FBrf0064787] comment: Maybe - median anastomosis. subset: cur ! cur synonym: "CA" RELATED [] synonym: "dorsal cervical anastomosis" RELATED [] is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) is_a: FBbt:00005049 ! tracheal node (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000397 name: cephalic branch (Drosophila) namespace: fly_anatomy.ontology def: "Branch of the first tracheal metamere the tracheates the head but not (largely) the brain or foregut." [FBC:DOS] comment: Not to be confused with the cerebral or pharyngeal branches. subset: cur ! cur is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00000398 name: dorsal cephalic branch (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval trachea that branches anteriorly from dorsal branch 1." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "DC" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000397 ! cephalic branch (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000399 name: lateral cephalic branch (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval trachea that branches anteriorly from the lateral trunk close to transverse connective 1 and courses anterodorsally and superficially." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LC" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000397 ! cephalic branch (Drosophila) [Term] id: FBbt:00000400 name: ventral cephalic branch (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval trachea that branches anteriorly from the lateral trunk, just ventral to the lateral cephalic branch. It tracheates the head." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "VC" RELATED [] synonym: "ventral cervical branch" RELATED [] is_a: FBbt:00000397 ! cephalic branch (Drosophila) [Term] id: FBbt:00000401 name: tracheal branch of Tr10 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval trachea (FBbt:00000211) that is part of some tracheal metamere 10 (FBbt:00005035)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000211 ! embryonic/larval trachea (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000402 name: lateroposterior branch (Drosophila) namespace: fly_anatomy.ontology def: "Thin, ventro-posteriorly directed branch from the posterior of the lateral trunk in tracheal metamere 10 (A8)." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "LP" RELATED [] is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000403 name: caudal-hindgut branch (Drosophila) namespace: fly_anatomy.ontology def: "Primary trachea that branches from the point where the lateral trunk meets the transverse connective of tracheal metamere 10 (A8)." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "CH" RELATED [] is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: develops_from FBbt:00007470 ! abdominal tracheal primordium 8 (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000404 name: caudal branch (Drosophila) namespace: fly_anatomy.ontology def: "Primary trachea that arises as a posterior bifurcation of the caudal-hindgut branch of tracheal metamere 10 (A8) and splits into 4 branches that project posteriorly." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "CaB" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: develops_from FBbt:00007470 ! abdominal tracheal primordium 8 (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000405 name: hindgut branch (Drosophila) namespace: fly_anatomy.ontology def: "Primary trachea that arises as a posterior bifurcation of the caudal-hindgut branch of tracheal metamere 10 (A8) and ramifies into four or more branches on the surface of the hindgut." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "HB" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000401 ! tracheal branch of Tr10 (Drosophila) is_a: FBbt:00007472 ! primary trachea (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00005035 ! tracheal metamere 10 (Drosophila) [Term] id: FBbt:00000406 name: embryonic/larval spiracle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005600 def: "Any spiracle (FBbt:00005054) that is part of some embryonic/larval tracheal system (FBbt:00000185)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval spiracle" EXACT [] is_a: FBbt:00005054 ! spiracle (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000407 name: embryonic/larval anterior spiracle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005602 def: "Embryonic/larval spiracle housed in a protrusion of the prothoracic segment. These spiracles only become functional in the second instar when the spiracle has a club-like structure with eight lobes. A fine thread from the anterior spiracular gland is associated with each of the lobes. Late in the second instar, 8 protruding branches (papillae) develop around this club like structure, these become the spiracular ducts of the third instar spiracle, each with a spiracular opening." [FlyBase:FBrf0034081, FlyBase:FBrf0064787] subset: cur ! cur synonym: "larval anterior spiracle" EXACT [] is_a: FBbt:00000406 ! embryonic/larval spiracle (Drosophila) relationship: develops_from FBbt:00017001 ! anterior spiracle primordium (Drosophila) relationship: part_of FBbt:00000017 ! prothoracic segment (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00000408 name: papilla of larval anterior spiracle (Drosophila) namespace: fly_anatomy.ontology def: "Retractable finger of the anterior spiracle of the third instar larva. Each has a spiracular opening and serves as a spiracular duct. There are 8 of these per spiracle: 4 long and 4 short." [FlyBase:FBrf0034081, FlyBase:FBrf0064787] subset: cur ! cur synonym: "protruding branch" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00000407 ! embryonic/larval anterior spiracle (Drosophila) [Term] id: FBbt:00000409 name: anterior spiracular gland (Drosophila) namespace: fly_anatomy.ontology def: "A mass of about 30-50 polytene cells located in the protrusion of the prothoracic segment that houses the anterior spiracle of the larva. During the second instar, it is linked by ducts to the lobes of the anterior spiracle." [FlyBase:FBrf0034081, FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00100317 ! gland (Drosophila) relationship: part_of FBbt:00000407 ! embryonic/larval anterior spiracle (Drosophila) [Term] id: FBbt:00000410 name: anterior spiracle retractor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005090 ! muscle structure relationship: part_of FBbt:00000407 ! embryonic/larval anterior spiracle (Drosophila) [Term] id: FBbt:00000411 name: anterior spiracular scar (Drosophila) namespace: fly_anatomy.ontology def: "Cuticular scar associated with the anterior spiracle that is a remnant of moulting." [FlyBase:FBrf0034081, FlyBase:FBrf0064787] subset: cur ! cur synonym: "ecdysial scar" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00000407 ! embryonic/larval anterior spiracle (Drosophila) [Term] id: FBbt:00000412 name: non-functional larval spiracle (Drosophila) namespace: fly_anatomy.ontology def: "Spiracle that only opens during moulting, allowing ejection of the chitinous lining of or the trachea of the previous instar. The rest of the time, these are only identifiable as a thickening of the cuticle. During larval stages, the spiracles of tracheal metameres 2-9 are all of this type." [FlyBase:FBrf0034081, FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00000406 ! embryonic/larval spiracle (Drosophila) [Term] id: FBbt:00000413 name: non-functional larval spiracle of thoracic segment (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval thoracic segment (FBbt:00001742)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000412 ! non-functional larval spiracle (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00000414 name: non-functional larval spiracle of thoracic segment 2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000412 ! non-functional larval spiracle (Drosophila) comment: Does not exist. subset: cur ! cur [Term] id: FBbt:00000415 name: non-functional larval spiracle of thoracic segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000413 ! non-functional larval spiracle of thoracic segment (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000416 name: non-functional larval spiracle of abdominal segment (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment (FBbt:00001747)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000412 ! non-functional larval spiracle (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00000417 name: non-functional larval spiracle of abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000416 ! non-functional larval spiracle of abdominal segment (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000418 name: non-functional larval spiracle of abdominal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000416 ! non-functional larval spiracle of abdominal segment (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000419 name: non-functional larval spiracle of abdominal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000416 ! non-functional larval spiracle of abdominal segment (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000420 name: non-functional larval spiracle of abdominal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000416 ! non-functional larval spiracle of abdominal segment (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000421 name: non-functional larval spiracle of abdominal segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000416 ! non-functional larval spiracle of abdominal segment (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000422 name: non-functional larval spiracle of abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000416 ! non-functional larval spiracle of abdominal segment (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000423 name: non-functional larval spiracle of abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any non-functional larval spiracle (FBbt:00000412) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000416 ! non-functional larval spiracle of abdominal segment (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000424 name: embryonic/larval posterior spiracle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005604 def: "The main spiracle of the larva. During the first larval instar it is the only functional spiracle of the larva. A bilateral pair of these spiracles is housed in a bilateral pair of integumentary specializations - the stigmatophores. Each consists of a plate containing the spiracular openings. These connect to a spiracular chamber which in turn connects to the posterior end of the dorsal trunk." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "larval posterior spiracle" EXACT [] is_a: FBbt:00000406 ! embryonic/larval spiracle (Drosophila) relationship: develops_from FBbt:00000197 ! posterior spiracle primordium (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00000425 ! stigmatophore (Drosophila) [Term] id: FBbt:00000425 name: stigmatophore (Drosophila) namespace: fly_anatomy.ontology def: "External protrusion of the integument at the posterior terminal of the larva that houses the posterior spiracles. When the larva is buried in the semi-liquid medium where it feeds, the stigmatophore periscopes out of the medium, allowing the larva to continue breathing." [FlyBase:FBrf0111388] subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00000029 ! abdominal segment 8 (Drosophila) [Term] id: FBbt:00000426 name: spiracular chamber (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial tube that connects spiracular trachea 10 to the embryonic/larval posterior spiracle. It is lined with cuticular threads call filzkorper, covered in oily secretions from the spiracular gland." [FlyBase:FBrf0064787, FlyBase:FBrf0111388] subset: cur ! cur synonym: "atrium" RELATED [] is_a: UBERON:0003914 ! epithelial tube relationship: part_of FBbt:00000424 ! embryonic/larval posterior spiracle (Drosophila) [Term] id: FBbt:00000427 name: spiracular plate (Drosophila) namespace: fly_anatomy.ontology def: "Sclerotized plate of the embryonic/larval posterior spiracle containing the spiracular openings." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00000424 ! embryonic/larval posterior spiracle (Drosophila) [Term] id: FBbt:00000428 name: spiracular opening (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "spiracular cleft" RELATED [] synonym: "spiracular slit" RELATED [] is_a: UBERON:0000464 ! anatomical space relationship: part_of FBbt:00000427 ! spiracular plate (Drosophila) [Term] id: FBbt:00000429 name: posterior spiracular scar (Drosophila) namespace: fly_anatomy.ontology def: "Deformation in the spiracular plate that is a remnant of molting." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "ecdysial scar" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00000427 ! spiracular plate (Drosophila) [Term] id: FBbt:00000430 name: spiracular filament (Drosophila) namespace: fly_anatomy.ontology def: "Cuticular filament that connects the spiracular scar to the base of the spiracular chamber in the larval posterior spiracle during the second and third instars. It is a remnant of the expulsion of the spiracular cuticle during molting." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00000424 ! embryonic/larval posterior spiracle (Drosophila) [Term] id: FBbt:00000431 name: spiracular hair (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the embryonic/larval posterior spiracle. It consists of a cluster of branched hairs sharing a common socket." [FlyBase:FBrf0064526, FlyBase:FBrf0064787] comment: Candidate for merge with spiracular sensillum trichodeum? subset: cur ! cur synonym: "sph" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) is_a: FBbt:00007240 ! embryonic/larval sensillum (Drosophila) relationship: part_of FBbt:00000427 ! spiracular plate (Drosophila) [Term] id: FBbt:00000433 name: posterior spiracle retractor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005090 ! muscle structure relationship: part_of FBbt:00000427 ! spiracular plate (Drosophila) [Term] id: FBbt:00000434 name: filzkorper (Drosophila) namespace: fly_anatomy.ontology def: "Fine cuticular thread that lines the spiracular chamber." [FlyBase:FBrf0064787, FlyBase:FBrf0111388] subset: cur ! cur synonym: "felt chamber" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00000426 ! spiracular chamber (Drosophila) [Term] id: FBbt:00000435 name: posterior spiracular gland (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0078722] subset: cur ! cur is_a: FBbt:00100317 ! gland (Drosophila) relationship: part_of FBbt:00000427 ! spiracular plate (Drosophila) [Term] id: FBbt:00000436 name: posterior spiracular duct (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of FBbt:00000435 ! posterior spiracular gland (Drosophila) [Term] id: FBbt:00000437 name: posterior spiracular gland ductule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of FBbt:00000436 ! posterior spiracular duct (Drosophila) [Term] id: FBbt:00000438 name: presumptive embryonic/larval digestive system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval digestive system." [FlyBase:FBrf0007733, FlyBase:FBrf0064792, FlyBase:FBrf0076136] subset: cur ! cur synonym: "embryonic digestive system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00000441 name: hindgut proper primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 pHiGP" RELATED [FBC:ds555] synonym: "pHiGP2" RELATED [] is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005523 ! inclusive hindgut primordium (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00000442 name: Malpighian tubule primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "MTP2" RELATED [] synonym: "P2 MalT" RELATED [FBC:ds555] is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005523 ! inclusive hindgut primordium (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00000443 name: adult salivary gland primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "salivary gland placode" RELATED [] is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00016006 ! adult salivary gland anlage (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00000444 name: anterior midgut primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005245 alt_id: FBbt:00005250 def: "The primordium that will develop into the anterior midgut of both larva and adult. This forms during stage 8 when anterior endoderm cells, which have invaginated at the anterior end of the ventral furrow, divide and undergo an epithelial-to-mesenchymal transition. During stage 9, its cells divide a second time. During stage 10, the primordium attaches to the internal end of the stomodeum and spreads posteriorly with the stomodeal invagination, splitting into two lobes extending on either side of the yolk sac. A separate group of cells fuse with this primordium during stage 11. These cells delaminate from the stomodeum, becoming mesenchymal and mingling with the existing cells of the primordium. Fate mapping suggests that these cells will form the anterior-most part of the midgut, including the gastric caeca (Technau and Campos-Ortega, 1985). Adult midgut progenitors separate from the primordium during late stage 11 and stage 12. The remaining cells reorganize to become epithelial plates which then begin to fuse with the posterior midgut primordium during stage 12, forming the fused midgut primordium." [FlyBase:FBrf0043522, FlyBase:FBrf0089570] comment: This primordium may be temporally subdivided into the inclusive anterior midgut primordium, including adult midgut progenitors and the anterior midgut primordium proper, which contains only progenitors of the embryonic/larval midgut. However, the primordium proper exists only briefly during stage 12 and so we have chosen not to represent it in this ontology. Please use 'anterior midgut primordium' for both cases. Note, there is some controversy surrounding the account of anterior midgut development given in this definition. See Foe, 1989 and notes on this paper in Campos-Ortega and Hartenstein, 1997, pg 151-152). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 antEndoP" RELATED [FBC:ds555] synonym: "antMGP2" RELATED [] synonym: "anterior midgut inclusive primordium" NARROW [] synonym: "anterior midgut proper primordium" NARROW [] synonym: "embryonic anterior midgut" RELATED [] is_a: FBbt:00005624 ! embryonic/larval midgut primordium (Drosophila) is_a: FBbt:00025996 ! anterior endoderm derivative (Drosophila) relationship: develops_from FBbt:00005559 ! anterior endoderm (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) [Term] id: FBbt:00000445 name: proventriculus outer layer anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur synonym: "A antEndoA" RELATED [FBC:ds555] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) relationship: part_of UBERON:0000925 ! endoderm [Term] id: FBbt:00000446 name: interstitial cell precursor (Drosophila) namespace: fly_anatomy.ontology def: "A large basophilic cell that is a precursor of the midgut interstitial cells. These cells delaminate from the tip of the posterior midgut primordium during stage 11 to form the midgut interstitial cell primordium. They intercalate back into the midgut epithelium towards the end of stage 14." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "ICP" EXACT [] synonym: "large basophilic midgut cell" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00005452 ! midgut interstitial cell primordium (Drosophila) [Term] id: FBbt:00000447 name: posterior endoderm anlage (Drosophila) namespace: fly_anatomy.ontology def: "The precursor of the posterior part of the endoderm, prior to its invagination during stage 7." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn/A postEndo" RELATED [FBC:ds555] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005311 ! stage 5 embryo (Drosophila) relationship: part_of FBbt:00005318 ! stage 6 embryo (Drosophila) relationship: part_of FBbt:00005435 ! endoderm anlage (Drosophila) [Term] id: FBbt:00000449 name: adult midgut precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "A cell that is a progenitor of the adult midgut and is part of the embryonic/larval midgut. These cells occupy a basal position in the midgut epithelium and divide twice during larval stages to form clusters of four cells called midgut imaginal islands." [FlyBase:FBrf0064792, FlyBase:FBrf0089570] subset: cur ! cur synonym: "AMP" EXACT [] synonym: "spindle cell" EXACT [FlyBase:FBrf0064792] is_a: FBbt:00001886 ! embryonic/larval midgut cell (Drosophila) is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00000450 name: anterior adult midgut progenitor (Drosophila) namespace: fly_anatomy.ontology def: "A cell that is a progenitor of the adult midgut and is part of the anterior embryonic/larval midgut. These cells occupy a basal position in the midgut epithelium and proliferate during larval stages." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000449 ! adult midgut precursor cell (Drosophila) relationship: develops_from FBbt:00017028 ! adult anterior midgut primordium (Drosophila) [Term] id: FBbt:00000451 name: posterior adult midgut progenitor (Drosophila) namespace: fly_anatomy.ontology def: "A cell that is a progenitor of the adult midgut and is part of the posterior embryonic/larval midgut. These cells occupy a basal position in the midgut epithelium and proliferate during larval stages." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000449 ! adult midgut precursor cell (Drosophila) relationship: develops_from FBbt:00017014 ! adult posterior midgut primordium (Drosophila) [Term] id: FBbt:00000453 name: midgut chamber 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most chamber of the embryonic midgut. The posterior boundary of this chamber results from the formation of the midgut constriction 1 in early stage 16." [FlyBase:FBrf0051566] subset: cur ! cur is_a: FBbt:00005628 ! embryonic midgut chamber (Drosophila) [Term] id: FBbt:00000454 name: midgut chamber 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second anterior-most chamber of the embryonic midgut. The anterior boundary of this chamber forms from the midgut constriction 1, and the posterior boundary from the midgut constriction 2." [FlyBase:FBrf0051566] subset: cur ! cur is_a: FBbt:00005628 ! embryonic midgut chamber (Drosophila) [Term] id: FBbt:00000455 name: midgut chamber 3 (Drosophila) namespace: fly_anatomy.ontology def: "Second posterior-most chamber of the embryonic midgut. The anterior boundary of this chamber forms from the midgut constriction 2, and the posterior from the midgut constriction 3." [FlyBase:FBrf0051566] subset: cur ! cur is_a: FBbt:00005628 ! embryonic midgut chamber (Drosophila) [Term] id: FBbt:00000456 name: midgut chamber 4 (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most chamber of the embryonic midgut. The anterior boundary of this chamber forms from the midgut constriction 3." [FlyBase:FBrf0051566] subset: cur ! cur is_a: FBbt:00005628 ! embryonic midgut chamber (Drosophila) [Term] id: FBbt:00000457 name: midgut constriction (Drosophila) namespace: fly_anatomy.ontology def: "Constriction forming in the embryonic midgut between stage 15 and 16 caused by contraction of the mesoderm which, as a result, penetrates the underlying endoderm." [FlyBase:FBrf0051566] subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of FBbt:00007593 ! fused midgut primordium (Drosophila) [Term] id: FBbt:00000458 name: midgut constriction 1 (Drosophila) namespace: fly_anatomy.ontology def: "Third, and final, of the midgut constrictions to form, doing so during early stage 16 anterior to the midgut constriction 2." [FlyBase:FBrf0051566] subset: cur ! cur synonym: "anterior constriction" EXACT [FlyBase:FBrf0051566] is_a: FBbt:00000457 ! midgut constriction (Drosophila) [Term] id: FBbt:00000459 name: midgut constriction 2 (Drosophila) namespace: fly_anatomy.ontology def: "First of the midgut constrictions to form. At stage 15 this constriction forms in the middle position of the midgut close to the anterior bend of the hindgut." [FlyBase:FBrf0051566] subset: cur ! cur synonym: "middle constriction" EXACT [FlyBase:FBrf0051566] is_a: FBbt:00000457 ! midgut constriction (Drosophila) [Term] id: FBbt:00000460 name: midgut constriction 3 (Drosophila) namespace: fly_anatomy.ontology def: "Second of the midgut constrictions to form, doing so during early stage 16 posterior to midgut constriction 2." [FlyBase:FBrf0051566] subset: cur ! cur synonym: "posterior constriction" EXACT [FlyBase:FBrf0051566] is_a: FBbt:00000457 ! midgut constriction (Drosophila) [Term] id: FBbt:00000461 name: embryonic inner optic lobe primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 IOA" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00001059 ! visual primordium (Drosophila) relationship: part_of FBbt:00000186 ! embryonic optic lobe primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00000462 name: embryonic/larval muscle system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005648 def: "." [FlyBase:FBrf0031016, FlyBase:FBrf0041814, FlyBase:FBrf0044229, FlyBase:FBrf0064793] subset: cur ! cur synonym: "larval muscle system" EXACT [] is_a: UBERON:0000383 ! musculature of body relationship: develops_from FBbt:00005647 ! presumptive embryonic/larval muscle system (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00000464 name: embryonic/larval somatic muscle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005650 def: "Any somatic muscle (FBbt:00005073) that is part of some embryonic/larval muscle system (FBbt:00000462)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval somatic muscle" EXACT [] is_a: UBERON:0005090 ! muscle structure relationship: develops_from FBbt:00005518 ! somatic muscle primordium (Drosophila) relationship: part_of FBbt:00000462 ! embryonic/larval muscle system (Drosophila) [Term] id: FBbt:00000465 name: embryonic/larval hypodermal muscle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005652 subset: cur ! cur synonym: "larval hypodermal muscle" EXACT [] is_a: FBbt:00000464 ! embryonic/larval somatic muscle (Drosophila) [Term] id: FBbt:00000466 name: oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "A hypodermal muscle of the embryonic/larval musculature that runs from a dorsal anterior muscle attachment site to a ventral posterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000467 name: dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "A dorsally located hypodermal muscle of the embryonic/larval musculature that runs from a dorsal anterior muscle attachment site to a ventral posterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) [Term] id: FBbt:00000468 name: lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "A laterally located hypodermal muscle of the embryonic/larval musculature that runs from a dorsal anterior muscle attachment site to a ventral posterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) [Term] id: FBbt:00000469 name: ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located hypodermal muscle of the embryonic/larval musculature that runs from a dorsal anterior muscle attachment site to a ventral posterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) [Term] id: FBbt:00000470 name: transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "A hypodermal muscle of the embryonic/larval musculature with a transverse orientation (i.e. perpendicular to the anterior-posterior axis of the body)." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000471 name: dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "A dorsally located hypodermal muscle of the embryonic/larval musculature with a transverse orientation." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) [Term] id: FBbt:00000472 name: lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "A laterally located hypodermal muscle of the embryonic/larval musculature with a transverse orientation." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) [Term] id: FBbt:00000473 name: ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located hypodermal muscle of the embryonic/larval musculature with a transverse orientation." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) [Term] id: FBbt:00000474 name: acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "A hypodermal muscle of the embryonic/larval musculature that runs from a dorsal posterior muscle attachment site to a ventral anterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000475 name: dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "A dorsally located hypodermal muscle of the embryonic/larval musculature that runs from a dorsal posterior muscle attachment site to a ventral anterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000474 ! acute muscle (Drosophila) [Term] id: FBbt:00000476 name: lateral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "A laterally located hypodermal muscle of the embryonic/larval musculature that runs from a dorsal posterior muscle attachment site to a ventral anterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000474 ! acute muscle (Drosophila) [Term] id: FBbt:00000477 name: ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "A laterally located hypodermal muscle of the embryonic/larval musculature that runs from a dorsal posterior muscle attachment site to a ventral anterior one." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000474 ! acute muscle (Drosophila) [Term] id: FBbt:00000478 name: intersegmental muscle (Drosophila) namespace: fly_anatomy.ontology def: "A hypodermal muscle of the embryonic/larval musculature that spans multiple segments." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000479 name: ventral intersegmental muscle (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located hypodermal muscle of the embryonic/larval musculature that spans multiple segments." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000478 ! intersegmental muscle (Drosophila) [Term] id: FBbt:00000480 name: longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "A longitudinally orientated hypodermal muscle of the embryonic/larval musculature." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000481 name: lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "A laterally located, longitudinally orientated hypodermal muscle of the embryonic/larval musculature." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000480 ! longitudinal muscle (Drosophila) [Term] id: FBbt:00000482 name: ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located, longitudinally orientated hypodermal muscle of the embryonic/larval musculature." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000480 ! longitudinal muscle (Drosophila) [Term] id: FBbt:00000483 name: segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "An embryonic/larval hypodermal muscle that runs along the transverse apodeme at the segment boundary." [FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000484 name: internal muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) comment: This term comes from Crossley's classification of larval hypodermal muscles (FBrf0031016 == Crossley, 1978, Ashburner, Wright, 1978-1980 b: 499--560). This partially classifies on the basis of whether a muscle is in a layer immediately below the epidermis (external) or under another layer of hypodermal muscle (internal). This system is now little used and was only every very partially implemented in this ontology. Mappings for specific internal and external muscle classes to the modern nomenclature (FBrf0064793 == Bate, 1993, Bate, Martinez Arias, 1993: 1013--1090; FBrf0089570 == Campos-Ortega and Hartenstein, 1997, The embryonic development of Drosophila melanogaster. 2nd ed.) can be found as synonyms for the relevant terms. Mappings for the general terms to the modern nomenclature are not possible as classification as internal vs external cuts across the modern classification. In such cases one must choose either a more specific term if appropriate, or a very general term for embryonic/larval hypodermal muscle. [Term] id: FBbt:00000485 name: ventral internal muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) consider: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) consider: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) comment: This term comes from Crossley's classification of larval hypodermal muscles (FBrf0031016 == Crossley, 1978, Ashburner, Wright, 1978-1980 b: 499--560). This partially classifies on the basis of whether a muscle is in a layer immediately below the epidermis (external) or under another layer of hypodermal muscle (internal). This system is now little used and was only ever partially implemented in this ontology. Mappings for specific internal and external muscle classes to the modern nomenclature (FBrf0064793 == Bate, 1993, Bate, Martinez Arias, 1993: 1013--1090; FBrf0089570 == Campos-Ortega and Hartenstein, 1997, The embryonic development of Drosophila melanogaster. 2nd ed.) can be found as synonyms for the relevant terms. The most likely replacements for this term are abdominal ventral longitudinal muscles 3 & 4. [Term] id: FBbt:00000486 name: hypodermal muscle of head (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that overlaps some larval head (FBbt:00001730)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000487 name: pharyngeal muscle (Drosophila) namespace: fly_anatomy.ontology def: "A hypodermal muscle of the larval head that is connected to the pharynx or some closely associated structure." [FBC:DOS] subset: cur ! cur is_a: FBbt:00000486 ! hypodermal muscle of head (Drosophila) [Term] id: FBbt:00000488 name: prothoracic pharyngeal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any pharyngeal muscle (FBbt:00000487) that overlaps some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000487 ! pharyngeal muscle (Drosophila) is_a: FBbt:00000495 ! hypodermal muscle of prothorax (Drosophila) [Term] id: FBbt:00000489 name: dorsal pharyngeal muscle (Drosophila) namespace: fly_anatomy.ontology def: "A vertically oriented muscle that inserts ventrally into the dorsal pharynx (FBbt:00001866) and dorsally at the bottom of the dorsal pouch (FBbt:00001857)." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "DPM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000487 ! pharyngeal muscle (Drosophila) is_a: FBbt:00000496 ! mouthpart muscle (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00000490 name: ventral pharyngeal muscle (Drosophila) namespace: fly_anatomy.ontology def: "A ventrolaterally located embryonic/larval muscle that inserts on the ventral arm of the tentorium (FBbt:00001856)." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VPM" EXACT [FlyBase:FBrf0089570] synonym: "ventral prothoracic pharyngeal muscle" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00000487 ! pharyngeal muscle (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00000491 name: ventral pharyngeal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral pharyngeal muscle." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VPM1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000490 ! ventral pharyngeal muscle (Drosophila) [Term] id: FBbt:00000492 name: ventral pharyngeal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral pharyngeal muscle." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VPM2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000490 ! ventral pharyngeal muscle (Drosophila) [Term] id: FBbt:00000493 name: ventral pharyngeal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The ventral-most ventral pharyngeal muscle." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VPM3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000490 ! ventral pharyngeal muscle (Drosophila) [Term] id: FBbt:00000494 name: pericommissural muscle (Drosophila) namespace: fly_anatomy.ontology def: "An embryonic/larval hypodermal muscle of the head that flanks the supraesophageal commissure." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "PCM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000486 ! hypodermal muscle of head (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00000495 name: hypodermal muscle of prothorax (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that overlaps some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000496 name: mouthpart muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that connected to some embryonic/larval pharynx (FBbt:00001866)." [FBC:auto_generated_definition, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) [Term] id: FBbt:00000497 name: dorsal mouthpart muscle (Drosophila) namespace: fly_anatomy.ontology def: "A dorsolaterally located, embryonic/larval hypodermal muscle that extends from the wall of the pharynx to the epidermis of the prothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "DM" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00000488 ! prothoracic pharyngeal muscle (Drosophila) is_a: FBbt:00000496 ! mouthpart muscle (Drosophila) is_a: FBbt:00000514 ! prothoracic intersegmental muscle (Drosophila) relationship: develops_from FBbt:00005498 ! dorsal pharyngeal muscle primordium (Drosophila) [Term] id: FBbt:00000498 name: dorsal mouthpart muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most of the two dorsal mouthpart muscles." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "DM1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000497 ! dorsal mouthpart muscle (Drosophila) [Term] id: FBbt:00000499 name: dorsal mouthpart muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The ventral-most of the two dorsal mouthpart muscles." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "DM2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000497 ! dorsal mouthpart muscle (Drosophila) [Term] id: FBbt:00000500 name: ventral mouthpart muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located, embryonic/larval hypodermal muscle that extends from the lateral pharyngeal wall to the ventral epidermis of T1." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VM1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000488 ! prothoracic pharyngeal muscle (Drosophila) is_a: FBbt:00000496 ! mouthpart muscle (Drosophila) is_a: FBbt:00000514 ! prothoracic intersegmental muscle (Drosophila) [Term] id: FBbt:00000501 name: prothoracic oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any oblique muscle (FBbt:00000466) that overlaps some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) is_a: FBbt:00000495 ! hypodermal muscle of prothorax (Drosophila) [Term] id: FBbt:00000502 name: prothoracic dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal oblique muscle (FBbt:00000467) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000467 ! dorsal oblique muscle (Drosophila) is_a: FBbt:00000501 ! prothoracic oblique muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000503 name: prothoracic dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most oblique muscle of the embryonic/larval prothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T1 deo2" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic dorsal external oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000502 ! prothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000504 name: prothoracic dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most oblique muscle of the embryonic/larval prothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T1 deo1" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic dorsal external oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000502 ! prothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000505 name: prothoracic dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most oblique muscle of the embryonic/larval prothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T1 dio2" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic dorsal internal oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000502 ! prothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000506 name: prothoracic dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most oblique muscle of the embryonic/larval prothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T1 dio1" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic dorsal internal oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000502 ! prothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000507 name: prothoracic transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any transverse muscle (FBbt:00000470) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) is_a: FBbt:00000495 ! hypodermal muscle of prothorax (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000508 name: prothoracic ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral transverse muscle (FBbt:00000473) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "VT" BROAD [FlyBase:FBrf0064793] is_a: FBbt:00000473 ! ventral transverse muscle (Drosophila) is_a: FBbt:00000507 ! prothoracic transverse muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000509 name: prothoracic ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only ventral transverse muscle of the embryonic/larval prothoracic segment. This muscle is branched, with one ventral attachment point and two lateral ones." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000508 ! prothoracic ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000510 name: prothoracic acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any acute muscle (FBbt:00000474) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000474 ! acute muscle (Drosophila) is_a: FBbt:00000495 ! hypodermal muscle of prothorax (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000511 name: prothoracic lateral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral acute muscle (FBbt:00000476) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 LA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000476 ! lateral acute muscle (Drosophila) is_a: FBbt:00000510 ! prothoracic acute muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000512 name: prothoracic lateral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most lateral acute muscle of the prothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 LA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T1 pet1" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic pleural external transverse muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000511 ! prothoracic lateral acute muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000513 name: prothoracic lateral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most lateral acute muscle of the prothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T1 LA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T1 pet2" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic pleural external transverse muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000511 ! prothoracic lateral acute muscle (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00000514 name: prothoracic intersegmental muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any intersegmental muscle (FBbt:00000478) that overlaps some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000478 ! intersegmental muscle (Drosophila) is_a: FBbt:00000495 ! hypodermal muscle of prothorax (Drosophila) [Term] id: FBbt:00000515 name: prothoracic ventral intersegmental muscle (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located embryonic/larval hypodermal muscle that extends from the anterior apodeme of the prothoracic segment to some attachment site in a segment posterior to the prothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VIS" RELATED [] synonym: "VS" RELATED [] is_a: FBbt:00000479 ! ventral intersegmental muscle (Drosophila) is_a: FBbt:00000514 ! prothoracic intersegmental muscle (Drosophila) [Term] id: FBbt:00000516 name: prothoracic ventral intersegmental muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second dorsal-most ventral intersegmental muscle attached to the anterior apodeme of the prothoracic segment. Its posterior end is attached to the anterior apodeme of the first abdominal segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VIS2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "pmm1" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic-metathoracic muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000515 ! prothoracic ventral intersegmental muscle (Drosophila) [Term] id: FBbt:00000517 name: prothoracic ventral intersegmental muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third dorsal-most ventral intersegmental muscle attached to the anterior apodeme of the prothoracic segment. Its posterior end is attached to the anterior apodeme of the first abdominal segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VIS3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "pmm2" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic-metathoracic muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000515 ! prothoracic ventral intersegmental muscle (Drosophila) [Term] id: FBbt:00000518 name: prothoracic ventral intersegmental muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth dorsal-most ventral intersegmental muscle attached to the anterior apodeme of the prothoracic segment. Its posterior end is attached to the anterior apodeme of the first abdominal segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VIS4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "pmm3" EXACT [FlyBase:FBrf0041814] synonym: "prothoracic-metathoracic muscle 3" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000515 ! prothoracic ventral intersegmental muscle (Drosophila) [Term] id: FBbt:00000519 name: prothoracic ventral intersegmental muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth dorsal-most (the most ventral) ventral intersegmental muscle attached to the anterior apodeme of the prothoracic segment. Its posterior end is attached to the anterior apodeme of the first abdominal segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "VIS5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000515 ! prothoracic ventral intersegmental muscle (Drosophila) [Term] id: FBbt:00000520 name: hypodermal muscle of mesothorax (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000521 name: mesothoracic acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any acute muscle (FBbt:00000474) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000474 ! acute muscle (Drosophila) is_a: FBbt:00000520 ! hypodermal muscle of mesothorax (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000522 name: mesothoracic dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal acute muscle (FBbt:00000475) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T2 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000475 ! dorsal acute muscle (Drosophila) is_a: FBbt:00000521 ! mesothoracic acute muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000523 name: mesothoracic dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 dio4" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal internal oblique muscle 4" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000522 ! mesothoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000524 name: mesothoracic dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 dio3" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal internal oblique muscle 3" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000522 ! mesothoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000525 name: mesothoracic dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 dio2" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal internal oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000522 ! mesothoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000526 name: mesothoracic dorsal acute muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DA4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 dio1" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal internal oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000522 ! mesothoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000527 name: mesothoracic oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any oblique muscle (FBbt:00000466) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) is_a: FBbt:00000520 ! hypodermal muscle of mesothorax (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000528 name: mesothoracic dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal oblique muscle (FBbt:00000467) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000467 ! dorsal oblique muscle (Drosophila) is_a: FBbt:00000527 ! mesothoracic oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000529 name: mesothoracic dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most oblique muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 deo4" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal external oblique muscle 4" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000528 ! mesothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000530 name: mesothoracic dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most oblique muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 deo3" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal external oblique muscle 3" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000528 ! mesothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000531 name: mesothoracic dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most oblique muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 deo2" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal external oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000528 ! mesothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000532 name: mesothoracic dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most oblique muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 deo1" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic dorsal external oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000528 ! mesothoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000533 name: mesothoracic lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral oblique muscle (FBbt:00000468) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "LO" BROAD [FlyBase:FBrf0064793] is_a: FBbt:00000468 ! lateral oblique muscle (Drosophila) is_a: FBbt:00000527 ! mesothoracic oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000534 name: mesothoracic lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only lateral oblique muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 peo1" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic pleural external oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000533 ! mesothoracic lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000535 name: mesothoracic ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral oblique muscle (FBbt:00000469) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000469 ! ventral oblique muscle (Drosophila) is_a: FBbt:00000527 ! mesothoracic oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000536 name: mesothoracic ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral oblique muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 veo1" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic ventral external oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000535 ! mesothoracic ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000537 name: mesothoracic ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral oblique muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 veo2" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic ventral external oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000535 ! mesothoracic ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000538 name: mesothoracic segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any segment border muscle (FBbt:00000483) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T2 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 pit" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic pleural internal transverse muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000483 ! segment border muscle (Drosophila) is_a: FBbt:00000520 ! hypodermal muscle of mesothorax (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000539 name: mesothoracic transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any transverse muscle (FBbt:00000470) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) is_a: FBbt:00000520 ! hypodermal muscle of mesothorax (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000540 name: mesothoracic lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral transverse muscle (FBbt:00000472) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T2 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000472 ! lateral transverse muscle (Drosophila) is_a: FBbt:00000539 ! mesothoracic transverse muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000541 name: mesothoracic lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most lateral transverse muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 pet1" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic pleural external transverse muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000540 ! mesothoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000542 name: mesothoracic lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second anterior-most lateral transverse muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 pet2" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic pleural external transverse muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000540 ! mesothoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000543 name: mesothoracic lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third anterior-most lateral transverse muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 pet3" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic pleural external transverse muscle 3" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000540 ! mesothoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000544 name: mesothoracic lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth anterior-most lateral transverse muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 pet4" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic pleural external transverse muscle 4" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000540 ! mesothoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000545 name: mesothoracic longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any longitudinal muscle (FBbt:00000480) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000480 ! longitudinal muscle (Drosophila) is_a: FBbt:00000520 ! hypodermal muscle of mesothorax (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000546 name: mesothoracic lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral longitudinal muscle (FBbt:00000481) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "LL" BROAD [FlyBase:FBrf0064793] is_a: FBbt:00000481 ! lateral longitudinal muscle (Drosophila) is_a: FBbt:00000545 ! mesothoracic longitudinal muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000547 name: mesothoracic lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only laterally located longitudinal muscle in embryonic/larval mesothoracic segment 1." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 pl1" EXACT [FlyBase:FBrf0041814] synonym: "mesothoracic pleural longitudinal muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000546 ! mesothoracic lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000548 name: mesothoracic ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral longitudinal muscle (FBbt:00000482) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T2 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000482 ! ventral longitudinal muscle (Drosophila) is_a: FBbt:00000545 ! mesothoracic longitudinal muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000549 name: mesothoracic ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral longitudinal muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000548 ! mesothoracic ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000550 name: mesothoracic ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral longitudinal muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000548 ! mesothoracic ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000551 name: mesothoracic ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most ventral longitudinal muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T2 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000548 ! mesothoracic ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00000552 name: hypodermal muscle of metathorax (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000553 name: metathoracic acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any acute muscle (FBbt:00000474) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000474 ! acute muscle (Drosophila) is_a: FBbt:00000552 ! hypodermal muscle of metathorax (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000554 name: metathoracic dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal acute muscle (FBbt:00000475) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T3 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000475 ! dorsal acute muscle (Drosophila) is_a: FBbt:00000553 ! metathoracic acute muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000555 name: metathoracic dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most dorsal acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 dio5" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic dorsal internal oblique muscle 5" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000554 ! metathoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000556 name: metathoracic dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second dorsal-most dorsal acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 dio4" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic dorsal internal oblique muscle 4" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000554 ! metathoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000557 name: metathoracic dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third dorsal-most dorsal acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 dio3" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic dorsal internal oblique muscle 3" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000554 ! metathoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000558 name: metathoracic dorsal acute muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth dorsal-most dorsal acute muscle of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DA4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 dio2" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic dorsal internal oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000554 ! metathoracic dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000559 name: metathoracic ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral acute muscle (FBbt:00000477) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T3 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000477 ! ventral acute muscle (Drosophila) is_a: FBbt:00000553 ! metathoracic acute muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000560 name: metathoracic ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only ventral acute muscle of the embryonic/larval mesothorax." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 vs1" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic ventral superficial 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000559 ! metathoracic ventral acute muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000561 name: metathoracic oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any oblique muscle (FBbt:00000466) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) is_a: FBbt:00000552 ! hypodermal muscle of metathorax (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000562 name: metathoracic dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal oblique muscle (FBbt:00000467) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000467 ! dorsal oblique muscle (Drosophila) is_a: FBbt:00000561 ! metathoracic oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000563 name: metathoracic dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most dorsal oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 deo3" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic dorsal external oblique muscle 3" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000562 ! metathoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000564 name: metathoracic dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second dorsal-most oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 deo2" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic dorsal external oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000562 ! metathoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000565 name: metathoracic dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third dorsal-most oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 deo1" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic dorsal external oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000562 ! metathoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000566 name: metathoracic dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth dorsal-most oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 peo2" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic pleural external oblique muscle 2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000562 ! metathoracic dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000567 name: metathoracic lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral oblique muscle (FBbt:00000468) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "LO" RELATED [] is_a: FBbt:00000468 ! lateral oblique muscle (Drosophila) is_a: FBbt:00000561 ! metathoracic oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000568 name: metathoracic lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only lateral oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 peo1" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic pleural external oblique muscle 1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000567 ! metathoracic lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000569 name: metathoracic ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral oblique muscle (FBbt:00000469) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition, FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000469 ! ventral oblique muscle (Drosophila) is_a: FBbt:00000561 ! metathoracic oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000570 name: metathoracic ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most ventral oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 vio1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000569 ! metathoracic ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000571 name: metathoracic ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second dorsal-most ventral oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 vio2" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000569 ! metathoracic ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000572 name: metathoracic ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third dorsal-most ventral oblique muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "VO3" BROAD [FlyBase:FBrf0064793] synonym: "ventral internal oblique muscle" BROAD [FlyBase:FBrf0041814] synonym: "vio3" BROAD [FlyBase:FBrf0041814] is_a: FBbt:00000569 ! metathoracic ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000573 name: metathoracic segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any segment border muscle (FBbt:00000483) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T2 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T2 pit" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000483 ! segment border muscle (Drosophila) is_a: FBbt:00000552 ! hypodermal muscle of metathorax (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000574 name: metathoracic transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any transverse muscle (FBbt:00000470) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) is_a: FBbt:00000552 ! hypodermal muscle of metathorax (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000575 name: metathoracic lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral transverse muscle (FBbt:00000472) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T3 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000472 ! lateral transverse muscle (Drosophila) is_a: FBbt:00000574 ! metathoracic transverse muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000576 name: metathoracic lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most lateral transverse muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 pet1" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic pleural external transverse muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000575 ! metathoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000577 name: metathoracic lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second anterior-most lateral transverse muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 pet2" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic pleural external transverse muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000575 ! metathoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000578 name: metathoracic lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third anterior-most lateral transverse muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 pet3" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic pleural external transverse muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000575 ! metathoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000579 name: metathoracic lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth anterior-most (most posterior) lateral transverse muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 pet4" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic pleural external transverse muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000575 ! metathoracic lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000580 name: metathoracic longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any longitudinal muscle (FBbt:00000480) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000480 ! longitudinal muscle (Drosophila) is_a: FBbt:00000552 ! hypodermal muscle of metathorax (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000581 name: metathoracic lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral longitudinal muscle (FBbt:00000481) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "LL" RELATED [] is_a: FBbt:00000481 ! lateral longitudinal muscle (Drosophila) is_a: FBbt:00000580 ! metathoracic longitudinal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000582 name: metathoracic lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only lateral longitudinal muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "T3 pl1" EXACT [FlyBase:FBrf0041814] synonym: "metathoracic pleural longitudinal muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000581 ! metathoracic lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000583 name: metathoracic ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral longitudinal muscle (FBbt:00000482) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "T3 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000482 ! ventral longitudinal muscle (Drosophila) is_a: FBbt:00000580 ! metathoracic longitudinal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000584 name: metathoracic ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral longitudinal muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000583 ! metathoracic ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000585 name: metathoracic ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral longitudinal muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000583 ! metathoracic ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000586 name: metathoracic ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most ventral longitudinal muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000583 ! metathoracic ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000587 name: metathoracic ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The ventral-most (fourth dorsal-most) ventral longitudinal muscle of the embryonic/larval metathoracic segment." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "T3 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000583 ! metathoracic ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00000588 name: hypodermal muscle of abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that is part of some abdomen (FBbt:00000020)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00000589 name: A1-7 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any acute muscle (FBbt:00000474) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000474 ! acute muscle (Drosophila) is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000590 name: A1-7 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal acute muscle (FBbt:00000475) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1-7 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000475 ! dorsal acute muscle (Drosophila) is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000591 name: A1-7 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most dorsal acute muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 dio3" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 dorsal internal oblique 3" EXACT [FlyBase:FBrf0041814] synonym: "muscle 1" EXACT [FlyBase:FBrf0064793] synonym: "muscle 1 - dorsal internal oblique" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000592 name: A1-7 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most dorsal acute muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 dio2" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 dorsal internal oblique 2" EXACT [FlyBase:FBrf0041814] synonym: "muscle 2" EXACT [FlyBase:FBrf0064793] synonym: "muscle 2 - dorsal internal oblique" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000593 name: A1-7 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most dorsal acute muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 dio1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 dorsal internal oblique 1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 3" EXACT [FlyBase:FBrf0064793] synonym: "muscle 3 - dorsal internal oblique" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000594 name: A1-7 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral acute muscle (FBbt:00000477) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000477 ! ventral acute muscle (Drosophila) is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000595 name: A1-7 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most ventral acute muscle of larval abdominal segments A1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral superficial 2" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 vs2" EXACT [FlyBase:FBrf0041814] synonym: "muscle 26" EXACT [FlyBase:FBrf0064793] synonym: "muscle 26 - ventro-lateral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) relationship: develops_from FBbt:01000595 ! abdominal ventral acute muscle 1 founder cell (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000596 name: A1-7 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral acute muscle of larval abdominal segments A1-7. This muscle is attached to the posterior intrasegmental apodeme (ina2) of its segment (Campos-Ortega and Hartenstein, 1997, pg 172)." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral superficial 3" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 vs3" EXACT [FlyBase:FBrf0041814] synonym: "muscle 27" EXACT [FlyBase:FBrf0064793] synonym: "muscle 27 - ventro-lateral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) relationship: develops_from FBbt:01000596 ! abdominal ventral acute muscle 2 founder cell (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000597 name: A1-7 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most ventral acute muscle of larval abdominal segments A1-7. This muscle is attached to the posterior intrasegmental apodeme (ina2) of its segment (Campos-Ortega and Hartenstein, 1997, pg 172)." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral superficial 1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 vs1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 29" EXACT [FlyBase:FBrf0064793] synonym: "muscle 29 - ventral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) relationship: develops_from FBbt:01000597 ! abdominal ventral acute muscle 3 founder cell (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000598 name: A1-7 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any longitudinal muscle (FBbt:00000480) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000480 ! longitudinal muscle (Drosophila) is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000599 name: A1-7 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral longitudinal muscle (FBbt:00000481) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000481 ! lateral longitudinal muscle (Drosophila) is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000600 name: A1-7 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only lateral longitudinal muscle in each of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pl2" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural longitudinal 2" EXACT [FlyBase:FBrf0041814] synonym: "muscle 4" EXACT [FlyBase:FBrf0064793] synonym: "muscle 4 - dorso-lateral internal longitudinal " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000601 name: A1-7 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral longitudinal muscle that is part of larval abdominal segments 1-7. All of these span the segment - extending from one intersegmental apodeme to the next (Campos-Ortega and Hartenstein, 1997, pg 171 and pg 119)." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000482 ! ventral longitudinal muscle (Drosophila) is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000602 name: A1-7 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral longitudinal muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pl1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural longitudinal 1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 12" EXACT [FlyBase:FBrf0064793] synonym: "muscle 12 - pleural external longitudinal " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000603 name: A1-7 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral longitudinal muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral internal oblique 1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 vio1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 13" EXACT [FlyBase:FBrf0064793] synonym: "muscle 13 - pleural external longitudinal " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000604 name: A1-7 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most ventral longitudinal muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral internal oblique 2" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 vio2" EXACT [FlyBase:FBrf0041814] synonym: "muscle 6" EXACT [FlyBase:FBrf0064793] synonym: "muscle 6 - ventral internal longitudinal " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000605 name: A1-7 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral longitudinal muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral internal oblique 3" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 vio3" EXACT [FlyBase:FBrf0041814] synonym: "muscle 7" EXACT [FlyBase:FBrf0064793] synonym: "muscle 7 - ventral internal longitudinal " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000606 name: A1-7 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any segment border muscle (FBbt:00000483) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1-7 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pit" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural internal transverse" EXACT [FlyBase:FBrf0041814] synonym: "muscle 8" EXACT [FlyBase:FBrf0064793] synonym: "muscle 8 - pleural internal transverse " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000483 ! segment border muscle (Drosophila) is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000607 name: A1-7 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any oblique muscle (FBbt:00000466) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000608 name: A1-7 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal oblique muscle (FBbt:00000467) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1-7 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000467 ! dorsal oblique muscle (Drosophila) is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000609 name: A1-7 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most dorsal oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 deo4" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 dorsal external oblique 4" EXACT [FlyBase:FBrf0041814] synonym: "muscle 9" EXACT [FlyBase:FBrf0064793] synonym: "muscle 9 - dorsal external oblique" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000610 name: A1-7 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most dorsal oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 deo3" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 dorsal external oblique 3" EXACT [FlyBase:FBrf0041814] synonym: "muscle 10" EXACT [FlyBase:FBrf0064793] synonym: "muscle 10 - dorsal external oblique" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000611 name: A1-7 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most dorsal oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 deo2" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 dorsal external oblique 2" EXACT [FlyBase:FBrf0041814] synonym: "muscle 11" EXACT [FlyBase:FBrf0064793] synonym: "muscle 11- dorsal external oblique" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) relationship: develops_from FBbt:01000611 ! abdominal dorsal oblique muscle 3 founder cell (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000612 name: A1-7 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most dorsal oblique muscle of embryonic/larval abdominal segments 1-7. Its posterior end is attached to a site in the segment posterior to that in which it originates." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 deo1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 dorsal external oblique 1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 19" EXACT [FlyBase:FBrf0064793] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000613 name: A1-7 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most dorsal oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "muscle 20" EXACT [FlyBase:FBrf0064793] synonym: "muscle 20 - dorso-lateral external longitudinal " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000614 name: A1-7 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral oblique muscle (FBbt:00000468) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "LO" RELATED [] is_a: FBbt:00000468 ! lateral oblique muscle (Drosophila) is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000615 name: A1-7 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only lateral oblique muscle in each of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 peo1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural external oblique 1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 5" EXACT [FlyBase:FBrf0064793] synonym: "muscle 5 - pleural internal oblique" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) relationship: develops_from FBbt:01000615 ! abdominal lateral oblique muscle 1 founder cell (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000616 name: A1-7 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral oblique muscle that is part of larval abdominal segments 1-7. All of these attach to the intersegmental apodeme of their segment (Campos-Ortega and Hartenstein, 1997, pg 172)." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000469 ! ventral oblique muscle (Drosophila) is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000617 name: A1-7 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral external oblique 1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 veo1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 14 - ventral external oblique " EXACT [FlyBase:FBrf0031016] synonym: "muscle 14.1" EXACT [FlyBase:FBrf0064793] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000618 name: A1-7 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral external oblique 2" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 veo2" EXACT [FlyBase:FBrf0041814] synonym: "muscle 14.2" EXACT [FlyBase:FBrf0064793] synonym: "muscle 30" EXACT [FlyBase:FBrf0053781] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000619 name: A1-7 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most ventral oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral external oblique 3" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 veo3" EXACT [FlyBase:FBrf0041814] synonym: "muscle 28" EXACT [FlyBase:FBrf0064793] synonym: "muscle 28 - ventral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000620 name: A1-7 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral oblique muscle of embryonic/larval abdominal segments 1-7. Its posterior end is attached to the posterior intrasegmental apodeme (ina2) of the segment immediately posterior to its segment of origin (Campos-Ortega and Hartenstein 1985, fig 3.10)." [FlyBase:FBrf0041814, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral external oblique 4" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 veo4" EXACT [FlyBase:FBrf0041814] synonym: "muscle 15" EXACT [FlyBase:FBrf0064793] synonym: "muscle 15 - ventral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000469 ! ventral oblique muscle (Drosophila) is_a: FBbt:00000478 ! intersegmental muscle (Drosophila) [Term] id: FBbt:00000621 name: A1-7 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most ventral oblique muscle of embryonic/larval abdominal segments 1-7. Its posterior end is attached to the anterior intrasegmental apodeme (ina1) of the segment immediately posterior to its segment of origin (Campos-Ortega and Hartenstein 1985, fig 3.10)." [FlyBase:FBrf0041814, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 ventral external oblique 5" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 veo5" EXACT [FlyBase:FBrf0041814] synonym: "muscle 16" EXACT [FlyBase:FBrf0064793] synonym: "muscle 16 - ventral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000469 ! ventral oblique muscle (Drosophila) is_a: FBbt:00000478 ! intersegmental muscle (Drosophila) [Term] id: FBbt:00000622 name: A1-7 ventral oblique muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "The sixth dorsal-most ventral oblique muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 VO6" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "muscle 17" EXACT [FlyBase:FBrf0064793] synonym: "muscle 17 - ventral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000623 name: A1-7 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any transverse muscle (FBbt:00000470) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000624 name: A1-7 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal transverse muscle (FBbt:00000471) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "DT" BROAD [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000471 ! dorsal transverse muscle (Drosophila) is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000625 name: A1-7 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only dorsal transverse muscle of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pet5" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural external transverse 5" EXACT [FlyBase:FBrf0041814] synonym: "muscle 18" EXACT [FlyBase:FBrf0064793] synonym: "muscle 18 - dorso-lateral external oblique " EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) relationship: develops_from FBbt:01000625 ! abdominal dorsal transverse muscle 1 founder cell (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000626 name: A1-7 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral transverse muscle (FBbt:00000472) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition, FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000472 ! lateral transverse muscle (Drosophila) is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000627 name: A1-7 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The most anterior of the lateral transverse muscles in each of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pet1" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural external transverse 1" EXACT [FlyBase:FBrf0041814] synonym: "muscle 21" EXACT [FlyBase:FBrf0064793] synonym: "muscle 21 - pleural external transverse" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000628 name: A1-7 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second anterior-most of the lateral transverse muscles in each of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pet2" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural external transverse 2" EXACT [FlyBase:FBrf0041814] synonym: "muscle 22" EXACT [FlyBase:FBrf0064793] synonym: "muscle 22 - pleural external transverse" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000629 name: A1-7 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third anterior-most of the lateral transverse muscles in each of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pet3" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural external transverse 3" EXACT [FlyBase:FBrf0041814] synonym: "muscle 23" EXACT [FlyBase:FBrf0064793] synonym: "muscle 23 - pleural external transverse" EXACT [FlyBase:FBrf0031016] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000630 name: A1-7 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth anterior-most of the lateral transverse muscles in each of embryonic/larval abdominal segments 1-7." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1-7 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A1-7 pet4" EXACT [FlyBase:FBrf0041814] synonym: "A1-7 pleural external transverse 4" EXACT [FlyBase:FBrf0041814] synonym: "muscle 19 - dorso-lateral external oblique " EXACT [FlyBase:FBrf0031016] synonym: "muscle 24" EXACT [FlyBase:FBrf0064793] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000631 name: A1-7 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral transverse muscle (FBbt:00000473) that is part of some larval abdominal segment A1-7 (FBbt:00007586)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000473 ! ventral transverse muscle (Drosophila) is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000632 name: A2-7 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only ventral transverse muscle of embryonic/larval abdominal segments 2-7 (this muscle is absent from abdominal segment 1)." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A2-7 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "muscle 25" EXACT [FlyBase:FBrf0064793] is_a: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) relationship: develops_from FBbt:01000632 ! abdominal ventral transverse muscle 1 founder cell (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00000633 name: abdominal ventral transverse muscle 2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) consider: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) comment: None of the abdominal segments has more than one ventral transverse muscle (see FBrf0089570 == Campos-Ortega and Hartenstein, 1997, The embryonic development of Drosophila melanogaster. 2nd ed.) subset: cur ! cur synonym: "VT2" RELATED [] [Term] id: FBbt:00000634 name: abdominal ventral transverse muscle 3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) consider: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) comment: None of the abdominal segments has more than one ventral transverse muscle (see FBrf0089570 == Campos-Ortega and Hartenstein, 1997, The embryonic development of Drosophila melanogaster. 2nd ed.) subset: cur ! cur [Term] id: FBbt:00000635 name: abdominal ventral internal muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) consider: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) consider: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) comment: This term comes from Crossley's classification of larval hypodermal muscles (FBrf0031016 == Crossley, 1978, Ashburner, Wright, 1978-1980 b: 499--560). This partially classifies on the basis of whether a muscle is in a layer immediately below the epidermis (external) or under another layer of hypodermal muscle (internal). This system is now little used and was only every very partially implemented in this ontology. Mappings for specific internal and external muscle classes to the modern nomenclature (FBrf0064793 == Bate, 1993, Bate, Martinez Arias, 1993: 1013--1090; FBrf0089570 == Campos-Ortega and Hartenstein, 1997, The embryonic development of Drosophila melanogaster. 2nd ed.) can be found as synonyms for the relevant terms. The most likely replacements for this term are abdominal ventral longitudinal muscles 3 & 4. subset: cur ! cur synonym: "VI" RELATED [] [Term] id: FBbt:00000636 name: abdominal ventral internal muscle 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000465 ! embryonic/larval hypodermal muscle (Drosophila) consider: FBbt:00000653 ! abdominal 1 ventral longitudinal muscle 3 (Drosophila) consider: FBbt:00000654 ! abdominal 1 ventral longitudinal muscle 4 (Drosophila) comment: Judging from the synonym, this term came from Hooper's extension of Crossley's classification of larval hypodermal muscles (FBrf0044229 == Hooper, 1986, EMBO J. 5: 2321--2329, FBrf0031016 == Crossley, 1978, Ashburner, Wright, 1978-1980 b: 499--560). This partially classifies on the basis of whether a muscle is in a layer immediately below the epidermis (external) or under another layer of hypodermal muscle (internal). This system is now little used and was only every very partially implemented in this ontology. Mappings for specific internal and external muscle classes to the modern nomenclature (FBrf0064793 == Bate, 1993, Bate, Martinez Arias, 1993: 1013--1090; FBrf0089570 == Campos-Ortega and Hartenstein, 1997, The embryonic development of Drosophila melanogaster. 2nd ed.) can be found as synonyms for the relevant terms. The most likely replacements for this term are abdominal 1 ventral longitudinal muscles 3 & 4. subset: cur ! cur synonym: "VI1" RELATED [] synonym: "ventral internal longitudinal mouthpart associated muscle 31" RELATED [FlyBase:FBrf0044229] [Term] id: FBbt:00000637 name: hypodermal muscle of abdominal 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000638 name: abdominal 1 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any acute muscle (FBbt:00000474) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) is_a: FBbt:00000637 ! hypodermal muscle of abdominal 1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000639 name: abdominal 1 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal acute muscle (FBbt:00000475) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) is_a: FBbt:00000638 ! abdominal 1 acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000640 name: abdominal 1 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 1 (FBbt:00000591) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000591 ! A1-7 dorsal acute muscle 1 (Drosophila) is_a: FBbt:00000639 ! abdominal 1 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000641 name: abdominal 1 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 2 (FBbt:00000592) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000592 ! A1-7 dorsal acute muscle 2 (Drosophila) is_a: FBbt:00000639 ! abdominal 1 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000642 name: abdominal 1 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 3 (FBbt:00000593) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000593 ! A1-7 dorsal acute muscle 3 (Drosophila) is_a: FBbt:00000639 ! abdominal 1 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000643 name: abdominal 1 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle (FBbt:00000594) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) is_a: FBbt:00000638 ! abdominal 1 acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000644 name: abdominal 1 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 1 (FBbt:00000595) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000595 ! A1-7 ventral acute muscle 1 (Drosophila) is_a: FBbt:00000643 ! abdominal 1 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000645 name: abdominal 1 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 2 (FBbt:00000596) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000596 ! A1-7 ventral acute muscle 2 (Drosophila) is_a: FBbt:00000643 ! abdominal 1 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000646 name: abdominal 1 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 3 (FBbt:00000597) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000597 ! A1-7 ventral acute muscle 3 (Drosophila) is_a: FBbt:00000643 ! abdominal 1 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000647 name: abdominal 1 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 longitudinal muscle (FBbt:00000598) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) is_a: FBbt:00000637 ! hypodermal muscle of abdominal 1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000648 name: abdominal 1 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle (FBbt:00000599) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) is_a: FBbt:00000647 ! abdominal 1 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000649 name: abdominal 1 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle 1 (FBbt:00000600) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000600 ! A1-7 lateral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000648 ! abdominal 1 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000650 name: abdominal 1 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle (FBbt:00000601) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) is_a: FBbt:00000647 ! abdominal 1 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000651 name: abdominal 1 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 1 (FBbt:00000602) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000602 ! A1-7 ventral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000650 ! abdominal 1 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000652 name: abdominal 1 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 2 (FBbt:00000603) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000603 ! A1-7 ventral longitudinal muscle 2 (Drosophila) is_a: FBbt:00000650 ! abdominal 1 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000653 name: abdominal 1 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 3 (FBbt:00000604) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) is_a: FBbt:00000650 ! abdominal 1 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000654 name: abdominal 1 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 4 (FBbt:00000605) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) is_a: FBbt:00000650 ! abdominal 1 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000655 name: abdominal 1 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 segment border muscle (FBbt:00000606) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000606 ! A1-7 segment border muscle (Drosophila) is_a: FBbt:00000637 ! hypodermal muscle of abdominal 1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000656 name: abdominal 1 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 oblique muscle (FBbt:00000607) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) is_a: FBbt:00000637 ! hypodermal muscle of abdominal 1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000657 name: abdominal 1 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle (FBbt:00000608) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) is_a: FBbt:00000656 ! abdominal 1 oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000658 name: abdominal 1 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 1 (FBbt:00000609) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000609 ! A1-7 dorsal oblique muscle 1 (Drosophila) is_a: FBbt:00000657 ! abdominal 1 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000659 name: abdominal 1 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 2 (FBbt:00000610) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000610 ! A1-7 dorsal oblique muscle 2 (Drosophila) is_a: FBbt:00000657 ! abdominal 1 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000660 name: abdominal 1 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 3 (FBbt:00000611) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000611 ! A1-7 dorsal oblique muscle 3 (Drosophila) is_a: FBbt:00000657 ! abdominal 1 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000661 name: abdominal 1 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 4 (FBbt:00000612) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000612 ! A1-7 dorsal oblique muscle 4 (Drosophila) is_a: FBbt:00000657 ! abdominal 1 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000662 name: abdominal 1 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 5 (FBbt:00000613) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000613 ! A1-7 dorsal oblique muscle 5 (Drosophila) is_a: FBbt:00000657 ! abdominal 1 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000663 name: abdominal 1 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle (FBbt:00000614) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) is_a: FBbt:00000656 ! abdominal 1 oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000664 name: abdominal 1 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle 1 (FBbt:00000615) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000615 ! A1-7 lateral oblique muscle 1 (Drosophila) is_a: FBbt:00000663 ! abdominal 1 lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000665 name: abdominal 1 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle (FBbt:00000616) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) is_a: FBbt:00000656 ! abdominal 1 oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000666 name: abdominal 1 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 1 (FBbt:00000617) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000617 ! A1-7 ventral oblique muscle 1 (Drosophila) is_a: FBbt:00000665 ! abdominal 1 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000667 name: abdominal 1 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 2 (FBbt:00000618) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000618 ! A1-7 ventral oblique muscle 2 (Drosophila) is_a: FBbt:00000665 ! abdominal 1 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000668 name: abdominal 1 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth dorsal-most ventral oblique muscle of larval abdominal segment 1. Its posterior end extends into abdominal segment 2 where it attaches to the posterior intrasegmental apodeme (ina2)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000620 ! A1-7 ventral oblique muscle 4 (Drosophila) [Term] id: FBbt:00000669 name: abdominal 1 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth dorsal-most ventral oblique muscle of larval abdominal segment 1. Its posterior end extends into abdominal segment 2 where it attaches to the anterior intrasegmental apodeme (ina1)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000621 ! A1-7 ventral oblique muscle 5 (Drosophila) [Term] id: FBbt:00000670 name: abdominal 1 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 3 (FBbt:00000619) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000619 ! A1-7 ventral oblique muscle 3 (Drosophila) is_a: FBbt:00000665 ! abdominal 1 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000671 name: abdominal 1 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any transverse muscle (FBbt:00000470) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) is_a: FBbt:00000637 ! hypodermal muscle of abdominal 1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000672 name: abdominal 1 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle (FBbt:00000624) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) is_a: FBbt:00000671 ! abdominal 1 transverse muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000673 name: abdominal 1 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle 1 (FBbt:00000625) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000625 ! A1-7 dorsal transverse muscle 1 (Drosophila) is_a: FBbt:00000672 ! abdominal 1 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000674 name: abdominal 1 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle (FBbt:00000626) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) is_a: FBbt:00000671 ! abdominal 1 transverse muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000675 name: abdominal 1 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 1 (FBbt:00000627) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000627 ! A1-7 lateral transverse muscle 1 (Drosophila) is_a: FBbt:00000674 ! abdominal 1 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000676 name: abdominal 1 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 2 (FBbt:00000628) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000628 ! A1-7 lateral transverse muscle 2 (Drosophila) is_a: FBbt:00000674 ! abdominal 1 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000677 name: abdominal 1 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 3 (FBbt:00000629) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000629 ! A1-7 lateral transverse muscle 3 (Drosophila) is_a: FBbt:00000674 ! abdominal 1 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000678 name: abdominal 1 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 4 (FBbt:00000630) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A1 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000630 ! A1-7 lateral transverse muscle 4 (Drosophila) is_a: FBbt:00000674 ! abdominal 1 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000680 name: abdominal 1 ventral internal muscle 1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000679 def: "A large, longitudinally oriented hypodermal muscle located internal to the ventral longitudinal muscles of larval abdominal segment 1. Serial homologs of this muscle are not found in any other segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "A1 VI1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "muscle 31" EXACT [FlyBase:FBrf0064793] is_a: FBbt:00000647 ! abdominal 1 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00000681 name: hypodermal muscle of larval abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that is part of some larval abdomen (FBbt:00001746)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000588 ! hypodermal muscle of abdomen (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00000682 name: hypodermal muscle of larval abdominal 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any hypodermal muscle of larval abdomen (FBbt:00000681) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000683 name: abdominal 2 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 acute muscle (FBbt:00000589) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) is_a: FBbt:00000682 ! hypodermal muscle of larval abdominal 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000684 name: abdominal 2 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle (FBbt:00000590) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) is_a: FBbt:00000683 ! abdominal 2 acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000685 name: abdominal 2 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 1 (FBbt:00000591) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000591 ! A1-7 dorsal acute muscle 1 (Drosophila) is_a: FBbt:00000684 ! abdominal 2 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000686 name: abdominal 2 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 2 (FBbt:00000592) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000592 ! A1-7 dorsal acute muscle 2 (Drosophila) is_a: FBbt:00000684 ! abdominal 2 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000687 name: abdominal 2 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 3 (FBbt:00000593) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000593 ! A1-7 dorsal acute muscle 3 (Drosophila) is_a: FBbt:00000684 ! abdominal 2 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000688 name: abdominal 2 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle (FBbt:00000594) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) is_a: FBbt:00000683 ! abdominal 2 acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000689 name: abdominal 2 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 1 (FBbt:00000595) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000595 ! A1-7 ventral acute muscle 1 (Drosophila) is_a: FBbt:00000688 ! abdominal 2 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000690 name: abdominal 2 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 2 (FBbt:00000596) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000596 ! A1-7 ventral acute muscle 2 (Drosophila) is_a: FBbt:00000688 ! abdominal 2 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000691 name: abdominal 2 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 3 (FBbt:00000597) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000597 ! A1-7 ventral acute muscle 3 (Drosophila) is_a: FBbt:00000688 ! abdominal 2 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000692 name: abdominal 2 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 oblique muscle (FBbt:00000607) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) is_a: FBbt:00000682 ! hypodermal muscle of larval abdominal 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000693 name: abdominal 2 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle (FBbt:00000608) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) is_a: FBbt:00000692 ! abdominal 2 oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000694 name: abdominal 2 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 1 (FBbt:00000609) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000609 ! A1-7 dorsal oblique muscle 1 (Drosophila) is_a: FBbt:00000693 ! abdominal 2 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000695 name: abdominal 2 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 2 (FBbt:00000610) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000610 ! A1-7 dorsal oblique muscle 2 (Drosophila) is_a: FBbt:00000693 ! abdominal 2 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000696 name: abdominal 2 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 3 (FBbt:00000611) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000611 ! A1-7 dorsal oblique muscle 3 (Drosophila) is_a: FBbt:00000693 ! abdominal 2 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000697 name: abdominal 2 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 4 (FBbt:00000612) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000612 ! A1-7 dorsal oblique muscle 4 (Drosophila) is_a: FBbt:00000693 ! abdominal 2 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000698 name: abdominal 2 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 5 (FBbt:00000613) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000613 ! A1-7 dorsal oblique muscle 5 (Drosophila) is_a: FBbt:00000693 ! abdominal 2 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000699 name: abdominal 2 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle (FBbt:00000614) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) is_a: FBbt:00000692 ! abdominal 2 oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000700 name: abdominal 2 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle 1 (FBbt:00000615) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000615 ! A1-7 lateral oblique muscle 1 (Drosophila) is_a: FBbt:00000699 ! abdominal 2 lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000701 name: abdominal 2 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle (FBbt:00000616) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) is_a: FBbt:00000692 ! abdominal 2 oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000702 name: abdominal 2 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 1 (FBbt:00000617) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000617 ! A1-7 ventral oblique muscle 1 (Drosophila) is_a: FBbt:00000701 ! abdominal 2 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000703 name: abdominal 2 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 2 (FBbt:00000618) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000618 ! A1-7 ventral oblique muscle 2 (Drosophila) is_a: FBbt:00000701 ! abdominal 2 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000704 name: abdominal 2 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 3 (FBbt:00000619) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000619 ! A1-7 ventral oblique muscle 3 (Drosophila) is_a: FBbt:00000701 ! abdominal 2 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000705 name: abdominal 2 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most, ventral oblique muscle of larval abdominal segment 2. Its posterior end extends into abdominal segment 3 where it attaches to the posterior intrasegmental apodeme (ina2)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A2 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000620 ! A1-7 ventral oblique muscle 4 (Drosophila) [Term] id: FBbt:00000706 name: abdominal 2 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most ventral oblique muscle of larval abdominal segment 2. Its posterior end extends into abdominal segment 3 where it attaches to the anterior intrasegmental apodeme (ina1)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A2 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000621 ! A1-7 ventral oblique muscle 5 (Drosophila) [Term] id: FBbt:00000707 name: abdominal 2 ventral oblique muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 6 (FBbt:00000622) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VO6" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000622 ! A1-7 ventral oblique muscle 6 (Drosophila) is_a: FBbt:00000701 ! abdominal 2 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000708 name: abdominal 2 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 longitudinal muscle (FBbt:00000598) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) is_a: FBbt:00000682 ! hypodermal muscle of larval abdominal 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000709 name: abdominal 2 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle (FBbt:00000599) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) is_a: FBbt:00000708 ! abdominal 2 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000710 name: abdominal 2 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle 1 (FBbt:00000600) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000600 ! A1-7 lateral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000709 ! abdominal 2 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000711 name: abdominal 2 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle (FBbt:00000601) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) is_a: FBbt:00000708 ! abdominal 2 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000712 name: abdominal 2 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 1 (FBbt:00000602) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000602 ! A1-7 ventral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000711 ! abdominal 2 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000713 name: abdominal 2 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 2 (FBbt:00000603) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000603 ! A1-7 ventral longitudinal muscle 2 (Drosophila) is_a: FBbt:00000711 ! abdominal 2 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000714 name: abdominal 2 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 3 (FBbt:00000604) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) is_a: FBbt:00000711 ! abdominal 2 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000715 name: abdominal 2 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 4 (FBbt:00000605) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) is_a: FBbt:00000711 ! abdominal 2 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000716 name: abdominal 2 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 segment border muscle (FBbt:00000606) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000606 ! A1-7 segment border muscle (Drosophila) is_a: FBbt:00000682 ! hypodermal muscle of larval abdominal 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000717 name: abdominal 2 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 transverse muscle (FBbt:00000623) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) is_a: FBbt:00000682 ! hypodermal muscle of larval abdominal 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000718 name: abdominal 2 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle (FBbt:00000624) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) is_a: FBbt:00000717 ! abdominal 2 transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000719 name: abdominal 2 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle 1 (FBbt:00000625) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000625 ! A1-7 dorsal transverse muscle 1 (Drosophila) is_a: FBbt:00000718 ! abdominal 2 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000720 name: abdominal 2 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle (FBbt:00000626) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) is_a: FBbt:00000717 ! abdominal 2 transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000721 name: abdominal 2 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 1 (FBbt:00000627) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000627 ! A1-7 lateral transverse muscle 1 (Drosophila) is_a: FBbt:00000720 ! abdominal 2 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000722 name: abdominal 2 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 2 (FBbt:00000628) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000628 ! A1-7 lateral transverse muscle 2 (Drosophila) is_a: FBbt:00000720 ! abdominal 2 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000723 name: abdominal 2 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 3 (FBbt:00000629) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000629 ! A1-7 lateral transverse muscle 3 (Drosophila) is_a: FBbt:00000720 ! abdominal 2 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000724 name: abdominal 2 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 4 (FBbt:00000630) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000630 ! A1-7 lateral transverse muscle 4 (Drosophila) is_a: FBbt:00000720 ! abdominal 2 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000725 name: abdominal 2 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral transverse muscle (FBbt:00000631) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) is_a: FBbt:00000717 ! abdominal 2 transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000726 name: abdominal 2 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A2-7 ventral transverse muscle 1 (FBbt:00000632) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A2 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) is_a: FBbt:00000725 ! abdominal 2 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00000727 name: hypodermal muscle of larval abdominal 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any hypodermal muscle of larval abdomen (FBbt:00000681) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000728 name: abdominal 3 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 acute muscle (FBbt:00000589) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) is_a: FBbt:00000727 ! hypodermal muscle of larval abdominal 3 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000729 name: abdominal 3 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle (FBbt:00000590) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) is_a: FBbt:00000728 ! abdominal 3 acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000730 name: abdominal 3 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 1 (FBbt:00000591) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000591 ! A1-7 dorsal acute muscle 1 (Drosophila) is_a: FBbt:00000729 ! abdominal 3 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000731 name: abdominal 3 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 2 (FBbt:00000592) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000592 ! A1-7 dorsal acute muscle 2 (Drosophila) is_a: FBbt:00000729 ! abdominal 3 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000732 name: abdominal 3 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 3 (FBbt:00000593) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000593 ! A1-7 dorsal acute muscle 3 (Drosophila) is_a: FBbt:00000729 ! abdominal 3 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000733 name: abdominal 3 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle (FBbt:00000594) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) is_a: FBbt:00000728 ! abdominal 3 acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000734 name: abdominal 3 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 1 (FBbt:00000595) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000595 ! A1-7 ventral acute muscle 1 (Drosophila) is_a: FBbt:00000733 ! abdominal 3 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000735 name: abdominal 3 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 2 (FBbt:00000596) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000596 ! A1-7 ventral acute muscle 2 (Drosophila) is_a: FBbt:00000733 ! abdominal 3 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000736 name: abdominal 3 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 3 (FBbt:00000597) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000597 ! A1-7 ventral acute muscle 3 (Drosophila) is_a: FBbt:00000733 ! abdominal 3 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000737 name: abdominal 3 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 oblique muscle (FBbt:00000607) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) is_a: FBbt:00000727 ! hypodermal muscle of larval abdominal 3 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000738 name: abdominal 3 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle (FBbt:00000608) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) is_a: FBbt:00000737 ! abdominal 3 oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000739 name: abdominal 3 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 1 (FBbt:00000609) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000609 ! A1-7 dorsal oblique muscle 1 (Drosophila) is_a: FBbt:00000738 ! abdominal 3 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000740 name: abdominal 3 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 2 (FBbt:00000610) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000610 ! A1-7 dorsal oblique muscle 2 (Drosophila) is_a: FBbt:00000738 ! abdominal 3 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000741 name: abdominal 3 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 3 (FBbt:00000611) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000611 ! A1-7 dorsal oblique muscle 3 (Drosophila) is_a: FBbt:00000738 ! abdominal 3 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000742 name: abdominal 3 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 4 (FBbt:00000612) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000612 ! A1-7 dorsal oblique muscle 4 (Drosophila) is_a: FBbt:00000738 ! abdominal 3 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000743 name: abdominal 3 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 5 (FBbt:00000613) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000613 ! A1-7 dorsal oblique muscle 5 (Drosophila) is_a: FBbt:00000738 ! abdominal 3 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000744 name: abdominal 3 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle (FBbt:00000614) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) is_a: FBbt:00000737 ! abdominal 3 oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000745 name: abdominal 3 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle 1 (FBbt:00000615) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000615 ! A1-7 lateral oblique muscle 1 (Drosophila) is_a: FBbt:00000744 ! abdominal 3 lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000746 name: abdominal 3 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle (FBbt:00000616) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) is_a: FBbt:00000737 ! abdominal 3 oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000747 name: abdominal 3 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 1 (FBbt:00000617) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000617 ! A1-7 ventral oblique muscle 1 (Drosophila) is_a: FBbt:00000746 ! abdominal 3 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000748 name: abdominal 3 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 2 (FBbt:00000618) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000618 ! A1-7 ventral oblique muscle 2 (Drosophila) is_a: FBbt:00000746 ! abdominal 3 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000749 name: abdominal 3 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 3 (FBbt:00000619) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000619 ! A1-7 ventral oblique muscle 3 (Drosophila) is_a: FBbt:00000746 ! abdominal 3 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000750 name: abdominal 3 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral oblique muscle of larval abdominal segment 3. Its posterior end extends into abdominal segment 4 where it attaches to the posterior intrasegmental apodeme (ina2)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A3 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000620 ! A1-7 ventral oblique muscle 4 (Drosophila) [Term] id: FBbt:00000751 name: abdominal 3 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most ventral oblique muscle of larval abdominal segment 3. Its posterior end extends into abdominal segment 4 where it attaches to the anterior intrasegmental apodeme (ina1)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A3 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000621 ! A1-7 ventral oblique muscle 5 (Drosophila) [Term] id: FBbt:00000752 name: abdominal 3 ventral oblique muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 6 (FBbt:00000622) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VO6" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000622 ! A1-7 ventral oblique muscle 6 (Drosophila) is_a: FBbt:00000746 ! abdominal 3 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000753 name: abdominal 3 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 longitudinal muscle (FBbt:00000598) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) is_a: FBbt:00000727 ! hypodermal muscle of larval abdominal 3 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000754 name: abdominal 3 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle (FBbt:00000599) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) is_a: FBbt:00000753 ! abdominal 3 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000755 name: abdominal 3 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle 1 (FBbt:00000600) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000600 ! A1-7 lateral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000754 ! abdominal 3 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000756 name: abdominal 3 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle (FBbt:00000601) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) is_a: FBbt:00000753 ! abdominal 3 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000757 name: abdominal 3 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 1 (FBbt:00000602) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000602 ! A1-7 ventral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000756 ! abdominal 3 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000758 name: abdominal 3 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 2 (FBbt:00000603) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000603 ! A1-7 ventral longitudinal muscle 2 (Drosophila) is_a: FBbt:00000756 ! abdominal 3 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000759 name: abdominal 3 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 3 (FBbt:00000604) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) is_a: FBbt:00000756 ! abdominal 3 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000760 name: abdominal 3 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 4 (FBbt:00000605) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) is_a: FBbt:00000756 ! abdominal 3 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000761 name: abdominal 3 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 segment border muscle (FBbt:00000606) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000606 ! A1-7 segment border muscle (Drosophila) is_a: FBbt:00000727 ! hypodermal muscle of larval abdominal 3 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000762 name: abdominal 3 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 transverse muscle (FBbt:00000623) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) is_a: FBbt:00000727 ! hypodermal muscle of larval abdominal 3 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000763 name: abdominal 3 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle (FBbt:00000624) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) is_a: FBbt:00000762 ! abdominal 3 transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000764 name: abdominal 3 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle 1 (FBbt:00000625) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000625 ! A1-7 dorsal transverse muscle 1 (Drosophila) is_a: FBbt:00000763 ! abdominal 3 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000765 name: abdominal 3 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle (FBbt:00000626) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) is_a: FBbt:00000762 ! abdominal 3 transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000766 name: abdominal 3 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 1 (FBbt:00000627) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000627 ! A1-7 lateral transverse muscle 1 (Drosophila) is_a: FBbt:00000765 ! abdominal 3 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000767 name: abdominal 3 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 2 (FBbt:00000628) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000628 ! A1-7 lateral transverse muscle 2 (Drosophila) is_a: FBbt:00000765 ! abdominal 3 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000768 name: abdominal 3 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 3 (FBbt:00000629) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000629 ! A1-7 lateral transverse muscle 3 (Drosophila) is_a: FBbt:00000765 ! abdominal 3 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000769 name: abdominal 3 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 4 (FBbt:00000630) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000630 ! A1-7 lateral transverse muscle 4 (Drosophila) is_a: FBbt:00000765 ! abdominal 3 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000770 name: abdominal 3 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral transverse muscle (FBbt:00000631) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) is_a: FBbt:00000762 ! abdominal 3 transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000771 name: abdominal 3 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A2-7 ventral transverse muscle 1 (FBbt:00000632) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A3 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) is_a: FBbt:00000770 ! abdominal 3 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00000772 name: hypodermal muscle of larval abdominal 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any hypodermal muscle of larval abdomen (FBbt:00000681) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000773 name: abdominal 4 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 acute muscle (FBbt:00000589) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) is_a: FBbt:00000772 ! hypodermal muscle of larval abdominal 4 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000774 name: abdominal 4 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle (FBbt:00000590) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) is_a: FBbt:00000773 ! abdominal 4 acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000775 name: abdominal 4 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 1 (FBbt:00000591) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000591 ! A1-7 dorsal acute muscle 1 (Drosophila) is_a: FBbt:00000774 ! abdominal 4 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000776 name: abdominal 4 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 2 (FBbt:00000592) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000592 ! A1-7 dorsal acute muscle 2 (Drosophila) is_a: FBbt:00000774 ! abdominal 4 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000777 name: abdominal 4 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 3 (FBbt:00000593) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000593 ! A1-7 dorsal acute muscle 3 (Drosophila) is_a: FBbt:00000774 ! abdominal 4 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000778 name: abdominal 4 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle (FBbt:00000594) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) is_a: FBbt:00000773 ! abdominal 4 acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000779 name: abdominal 4 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 1 (FBbt:00000595) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000595 ! A1-7 ventral acute muscle 1 (Drosophila) is_a: FBbt:00000778 ! abdominal 4 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000780 name: abdominal 4 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 2 (FBbt:00000596) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000596 ! A1-7 ventral acute muscle 2 (Drosophila) is_a: FBbt:00000778 ! abdominal 4 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000781 name: abdominal 4 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 3 (FBbt:00000597) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000597 ! A1-7 ventral acute muscle 3 (Drosophila) is_a: FBbt:00000778 ! abdominal 4 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000782 name: abdominal 4 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 oblique muscle (FBbt:00000607) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) is_a: FBbt:00000772 ! hypodermal muscle of larval abdominal 4 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000783 name: abdominal 4 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle (FBbt:00000608) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) is_a: FBbt:00000782 ! abdominal 4 oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000784 name: abdominal 4 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 1 (FBbt:00000609) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000609 ! A1-7 dorsal oblique muscle 1 (Drosophila) is_a: FBbt:00000783 ! abdominal 4 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000785 name: abdominal 4 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 2 (FBbt:00000610) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000610 ! A1-7 dorsal oblique muscle 2 (Drosophila) is_a: FBbt:00000783 ! abdominal 4 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000786 name: abdominal 4 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 3 (FBbt:00000611) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000611 ! A1-7 dorsal oblique muscle 3 (Drosophila) is_a: FBbt:00000783 ! abdominal 4 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000787 name: abdominal 4 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 4 (FBbt:00000612) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000612 ! A1-7 dorsal oblique muscle 4 (Drosophila) is_a: FBbt:00000783 ! abdominal 4 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000788 name: abdominal 4 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 5 (FBbt:00000613) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000613 ! A1-7 dorsal oblique muscle 5 (Drosophila) is_a: FBbt:00000783 ! abdominal 4 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000789 name: abdominal 4 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle (FBbt:00000614) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) is_a: FBbt:00000782 ! abdominal 4 oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000790 name: abdominal 4 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle 1 (FBbt:00000615) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000615 ! A1-7 lateral oblique muscle 1 (Drosophila) is_a: FBbt:00000789 ! abdominal 4 lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000791 name: abdominal 4 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle (FBbt:00000616) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) is_a: FBbt:00000782 ! abdominal 4 oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000792 name: abdominal 4 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 1 (FBbt:00000617) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000617 ! A1-7 ventral oblique muscle 1 (Drosophila) is_a: FBbt:00000791 ! abdominal 4 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000793 name: abdominal 4 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 2 (FBbt:00000618) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000618 ! A1-7 ventral oblique muscle 2 (Drosophila) is_a: FBbt:00000791 ! abdominal 4 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000794 name: abdominal 4 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 3 (FBbt:00000619) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000619 ! A1-7 ventral oblique muscle 3 (Drosophila) is_a: FBbt:00000791 ! abdominal 4 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000795 name: abdominal 4 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral oblique muscle of larval abdominal segment 4. Its posterior end extends into abdominal segment 5 where it attaches to the posterior intrasegmental apodeme (ina2)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A4 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000620 ! A1-7 ventral oblique muscle 4 (Drosophila) [Term] id: FBbt:00000796 name: abdominal 4 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most ventral oblique muscle of larval abdominal segment 4. Its posterior end extends into abdominal segment 5 where it attaches to the anterior intrasegmental apodeme (ina1)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A4 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000621 ! A1-7 ventral oblique muscle 5 (Drosophila) [Term] id: FBbt:00000797 name: abdominal 4 ventral oblique muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 6 (FBbt:00000622) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VO6" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000622 ! A1-7 ventral oblique muscle 6 (Drosophila) is_a: FBbt:00000791 ! abdominal 4 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000798 name: abdominal 4 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 longitudinal muscle (FBbt:00000598) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) is_a: FBbt:00000772 ! hypodermal muscle of larval abdominal 4 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000799 name: abdominal 4 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle (FBbt:00000599) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) is_a: FBbt:00000798 ! abdominal 4 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000800 name: abdominal 4 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle 1 (FBbt:00000600) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000600 ! A1-7 lateral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000799 ! abdominal 4 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000801 name: abdominal 4 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle (FBbt:00000601) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) is_a: FBbt:00000798 ! abdominal 4 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000802 name: abdominal 4 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 1 (FBbt:00000602) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000602 ! A1-7 ventral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000801 ! abdominal 4 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000803 name: abdominal 4 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 2 (FBbt:00000603) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000603 ! A1-7 ventral longitudinal muscle 2 (Drosophila) is_a: FBbt:00000801 ! abdominal 4 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000804 name: abdominal 4 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 3 (FBbt:00000604) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) is_a: FBbt:00000801 ! abdominal 4 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000805 name: abdominal 4 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 4 (FBbt:00000605) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) is_a: FBbt:00000801 ! abdominal 4 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000806 name: abdominal 4 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 segment border muscle (FBbt:00000606) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000606 ! A1-7 segment border muscle (Drosophila) is_a: FBbt:00000772 ! hypodermal muscle of larval abdominal 4 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000807 name: abdominal 4 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 transverse muscle (FBbt:00000623) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) is_a: FBbt:00000772 ! hypodermal muscle of larval abdominal 4 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000808 name: abdominal 4 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle (FBbt:00000624) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) is_a: FBbt:00000807 ! abdominal 4 transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000809 name: abdominal 4 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle 1 (FBbt:00000625) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000625 ! A1-7 dorsal transverse muscle 1 (Drosophila) is_a: FBbt:00000808 ! abdominal 4 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000810 name: abdominal 4 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle (FBbt:00000626) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) is_a: FBbt:00000807 ! abdominal 4 transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000811 name: abdominal 4 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 1 (FBbt:00000627) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000627 ! A1-7 lateral transverse muscle 1 (Drosophila) is_a: FBbt:00000810 ! abdominal 4 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000812 name: abdominal 4 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 2 (FBbt:00000628) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000628 ! A1-7 lateral transverse muscle 2 (Drosophila) is_a: FBbt:00000810 ! abdominal 4 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000813 name: abdominal 4 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 3 (FBbt:00000629) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000629 ! A1-7 lateral transverse muscle 3 (Drosophila) is_a: FBbt:00000810 ! abdominal 4 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000814 name: abdominal 4 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 4 (FBbt:00000630) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000630 ! A1-7 lateral transverse muscle 4 (Drosophila) is_a: FBbt:00000810 ! abdominal 4 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000815 name: abdominal 4 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral transverse muscle (FBbt:00000631) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) is_a: FBbt:00000807 ! abdominal 4 transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000816 name: abdominal 4 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A2-7 ventral transverse muscle 1 (FBbt:00000632) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A4 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) is_a: FBbt:00000815 ! abdominal 4 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00000817 name: hypodermal muscle of larval abdominal 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any hypodermal muscle of larval abdomen (FBbt:00000681) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000818 name: abdominal 5 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 acute muscle (FBbt:00000589) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) is_a: FBbt:00000817 ! hypodermal muscle of larval abdominal 5 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000819 name: abdominal 5 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle (FBbt:00000590) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) is_a: FBbt:00000818 ! abdominal 5 acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000820 name: abdominal 5 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 1 (FBbt:00000591) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000591 ! A1-7 dorsal acute muscle 1 (Drosophila) is_a: FBbt:00000819 ! abdominal 5 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000821 name: abdominal 5 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 2 (FBbt:00000592) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000592 ! A1-7 dorsal acute muscle 2 (Drosophila) is_a: FBbt:00000819 ! abdominal 5 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000822 name: abdominal 5 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 3 (FBbt:00000593) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000593 ! A1-7 dorsal acute muscle 3 (Drosophila) is_a: FBbt:00000819 ! abdominal 5 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000823 name: abdominal 5 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle (FBbt:00000594) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) is_a: FBbt:00000818 ! abdominal 5 acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000824 name: abdominal 5 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 1 (FBbt:00000595) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000595 ! A1-7 ventral acute muscle 1 (Drosophila) is_a: FBbt:00000823 ! abdominal 5 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000825 name: abdominal 5 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 2 (FBbt:00000596) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000596 ! A1-7 ventral acute muscle 2 (Drosophila) is_a: FBbt:00000823 ! abdominal 5 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000826 name: abdominal 5 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 3 (FBbt:00000597) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000597 ! A1-7 ventral acute muscle 3 (Drosophila) is_a: FBbt:00000823 ! abdominal 5 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000827 name: abdominal 5 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 oblique muscle (FBbt:00000607) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) is_a: FBbt:00000817 ! hypodermal muscle of larval abdominal 5 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000828 name: abdominal 5 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle (FBbt:00000608) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) is_a: FBbt:00000827 ! abdominal 5 oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000829 name: abdominal 5 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 1 (FBbt:00000609) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000609 ! A1-7 dorsal oblique muscle 1 (Drosophila) is_a: FBbt:00000828 ! abdominal 5 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000830 name: abdominal 5 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 2 (FBbt:00000610) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000610 ! A1-7 dorsal oblique muscle 2 (Drosophila) is_a: FBbt:00000828 ! abdominal 5 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000831 name: abdominal 5 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 3 (FBbt:00000611) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000611 ! A1-7 dorsal oblique muscle 3 (Drosophila) is_a: FBbt:00000828 ! abdominal 5 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000832 name: abdominal 5 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 4 (FBbt:00000612) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000612 ! A1-7 dorsal oblique muscle 4 (Drosophila) is_a: FBbt:00000828 ! abdominal 5 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000833 name: abdominal 5 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 5 (FBbt:00000613) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000613 ! A1-7 dorsal oblique muscle 5 (Drosophila) is_a: FBbt:00000828 ! abdominal 5 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000834 name: abdominal 5 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle (FBbt:00000614) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) is_a: FBbt:00000827 ! abdominal 5 oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000835 name: abdominal 5 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle 1 (FBbt:00000615) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000615 ! A1-7 lateral oblique muscle 1 (Drosophila) is_a: FBbt:00000834 ! abdominal 5 lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000836 name: abdominal 5 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle (FBbt:00000616) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) is_a: FBbt:00000827 ! abdominal 5 oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000837 name: abdominal 5 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 1 (FBbt:00000617) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000617 ! A1-7 ventral oblique muscle 1 (Drosophila) is_a: FBbt:00000836 ! abdominal 5 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000838 name: abdominal 5 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 2 (FBbt:00000618) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000618 ! A1-7 ventral oblique muscle 2 (Drosophila) is_a: FBbt:00000836 ! abdominal 5 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000839 name: abdominal 5 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 3 (FBbt:00000619) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000619 ! A1-7 ventral oblique muscle 3 (Drosophila) is_a: FBbt:00000836 ! abdominal 5 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000840 name: abdominal 5 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral oblique muscle of larval abdominal segment 5. Its posterior end extends into abdominal segment 6 where it attaches to the posterior intrasegmental apodeme (ina2)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A5 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000620 ! A1-7 ventral oblique muscle 4 (Drosophila) [Term] id: FBbt:00000841 name: abdominal 5 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most ventral oblique muscle of larval abdominal segment 5. Its posterior end extends into abdominal segment 6 where it attaches to the anterior intrasegmental apodeme (ina1)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A5 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000621 ! A1-7 ventral oblique muscle 5 (Drosophila) [Term] id: FBbt:00000842 name: abdominal 5 ventral oblique muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 6 (FBbt:00000622) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VO6" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000622 ! A1-7 ventral oblique muscle 6 (Drosophila) is_a: FBbt:00000836 ! abdominal 5 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000843 name: abdominal 5 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 longitudinal muscle (FBbt:00000598) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) is_a: FBbt:00000817 ! hypodermal muscle of larval abdominal 5 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000844 name: abdominal 5 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle (FBbt:00000599) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) is_a: FBbt:00000843 ! abdominal 5 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000845 name: abdominal 5 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle 1 (FBbt:00000600) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000600 ! A1-7 lateral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000844 ! abdominal 5 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000846 name: abdominal 5 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle (FBbt:00000601) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) is_a: FBbt:00000843 ! abdominal 5 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000847 name: abdominal 5 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 1 (FBbt:00000602) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000602 ! A1-7 ventral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000846 ! abdominal 5 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000848 name: abdominal 5 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 2 (FBbt:00000603) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000603 ! A1-7 ventral longitudinal muscle 2 (Drosophila) is_a: FBbt:00000846 ! abdominal 5 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000849 name: abdominal 5 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 3 (FBbt:00000604) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) is_a: FBbt:00000846 ! abdominal 5 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000850 name: abdominal 5 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 4 (FBbt:00000605) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) is_a: FBbt:00000846 ! abdominal 5 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000851 name: abdominal 5 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 segment border muscle (FBbt:00000606) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000606 ! A1-7 segment border muscle (Drosophila) is_a: FBbt:00000817 ! hypodermal muscle of larval abdominal 5 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000852 name: abdominal 5 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 transverse muscle (FBbt:00000623) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) is_a: FBbt:00000817 ! hypodermal muscle of larval abdominal 5 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000853 name: abdominal 5 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle (FBbt:00000624) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) is_a: FBbt:00000852 ! abdominal 5 transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000854 name: abdominal 5 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle 1 (FBbt:00000625) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000625 ! A1-7 dorsal transverse muscle 1 (Drosophila) is_a: FBbt:00000853 ! abdominal 5 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000855 name: abdominal 5 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle (FBbt:00000626) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) is_a: FBbt:00000852 ! abdominal 5 transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000856 name: abdominal 5 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 1 (FBbt:00000627) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000627 ! A1-7 lateral transverse muscle 1 (Drosophila) is_a: FBbt:00000855 ! abdominal 5 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000857 name: abdominal 5 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 2 (FBbt:00000628) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000628 ! A1-7 lateral transverse muscle 2 (Drosophila) is_a: FBbt:00000855 ! abdominal 5 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000858 name: abdominal 5 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 3 (FBbt:00000629) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000629 ! A1-7 lateral transverse muscle 3 (Drosophila) is_a: FBbt:00000855 ! abdominal 5 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000859 name: abdominal 5 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 4 (FBbt:00000630) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000630 ! A1-7 lateral transverse muscle 4 (Drosophila) is_a: FBbt:00000855 ! abdominal 5 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000860 name: abdominal 5 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral transverse muscle (FBbt:00000631) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) is_a: FBbt:00000852 ! abdominal 5 transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000861 name: abdominal 5 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A2-7 ventral transverse muscle 1 (FBbt:00000632) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A5 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) is_a: FBbt:00000860 ! abdominal 5 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00000862 name: hypodermal muscle of larval abdominal 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any hypodermal muscle of larval abdomen (FBbt:00000681) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000863 name: abdominal 6 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 acute muscle (FBbt:00000589) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) is_a: FBbt:00000862 ! hypodermal muscle of larval abdominal 6 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000864 name: abdominal 6 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle (FBbt:00000590) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) is_a: FBbt:00000863 ! abdominal 6 acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000865 name: abdominal 6 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 1 (FBbt:00000591) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000591 ! A1-7 dorsal acute muscle 1 (Drosophila) is_a: FBbt:00000864 ! abdominal 6 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000866 name: abdominal 6 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 2 (FBbt:00000592) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000592 ! A1-7 dorsal acute muscle 2 (Drosophila) is_a: FBbt:00000864 ! abdominal 6 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000867 name: abdominal 6 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 3 (FBbt:00000593) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000593 ! A1-7 dorsal acute muscle 3 (Drosophila) is_a: FBbt:00000864 ! abdominal 6 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000868 name: abdominal 6 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle (FBbt:00000594) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) is_a: FBbt:00000863 ! abdominal 6 acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000869 name: abdominal 6 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 1 (FBbt:00000595) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000595 ! A1-7 ventral acute muscle 1 (Drosophila) is_a: FBbt:00000868 ! abdominal 6 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000870 name: abdominal 6 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 2 (FBbt:00000596) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000596 ! A1-7 ventral acute muscle 2 (Drosophila) is_a: FBbt:00000868 ! abdominal 6 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000871 name: abdominal 6 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 3 (FBbt:00000597) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000597 ! A1-7 ventral acute muscle 3 (Drosophila) is_a: FBbt:00000868 ! abdominal 6 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000872 name: abdominal 6 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 oblique muscle (FBbt:00000607) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) is_a: FBbt:00000862 ! hypodermal muscle of larval abdominal 6 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000873 name: abdominal 6 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle (FBbt:00000608) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) is_a: FBbt:00000872 ! abdominal 6 oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000874 name: abdominal 6 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 1 (FBbt:00000609) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000609 ! A1-7 dorsal oblique muscle 1 (Drosophila) is_a: FBbt:00000873 ! abdominal 6 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000875 name: abdominal 6 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 2 (FBbt:00000610) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000610 ! A1-7 dorsal oblique muscle 2 (Drosophila) is_a: FBbt:00000873 ! abdominal 6 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000876 name: abdominal 6 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 3 (FBbt:00000611) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000611 ! A1-7 dorsal oblique muscle 3 (Drosophila) is_a: FBbt:00000873 ! abdominal 6 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000877 name: abdominal 6 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 4 (FBbt:00000612) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000612 ! A1-7 dorsal oblique muscle 4 (Drosophila) is_a: FBbt:00000873 ! abdominal 6 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000878 name: abdominal 6 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 5 (FBbt:00000613) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000613 ! A1-7 dorsal oblique muscle 5 (Drosophila) is_a: FBbt:00000873 ! abdominal 6 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000879 name: abdominal 6 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle (FBbt:00000614) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) is_a: FBbt:00000872 ! abdominal 6 oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000880 name: abdominal 6 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle 1 (FBbt:00000615) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000615 ! A1-7 lateral oblique muscle 1 (Drosophila) is_a: FBbt:00000879 ! abdominal 6 lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000881 name: abdominal 6 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle (FBbt:00000616) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) is_a: FBbt:00000872 ! abdominal 6 oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000882 name: abdominal 6 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 1 (FBbt:00000617) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000617 ! A1-7 ventral oblique muscle 1 (Drosophila) is_a: FBbt:00000881 ! abdominal 6 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000883 name: abdominal 6 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 2 (FBbt:00000618) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000618 ! A1-7 ventral oblique muscle 2 (Drosophila) is_a: FBbt:00000881 ! abdominal 6 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000884 name: abdominal 6 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 3 (FBbt:00000619) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000619 ! A1-7 ventral oblique muscle 3 (Drosophila) is_a: FBbt:00000881 ! abdominal 6 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000885 name: abdominal 6 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral oblique muscle of larval abdominal segment 6. Its posterior end extends into abdominal segment 7 where it attaches to the posterior intrasegmental apodeme (ina2)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A6 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000620 ! A1-7 ventral oblique muscle 4 (Drosophila) [Term] id: FBbt:00000886 name: abdominal 6 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most ventral oblique muscle of larval abdominal segment 6. Its posterior end extends into abdominal segment 7 where it attaches to the anterior intrasegmental apodeme (ina1)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A6 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000621 ! A1-7 ventral oblique muscle 5 (Drosophila) [Term] id: FBbt:00000887 name: abdominal 6 ventral oblique muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 6 (FBbt:00000622) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VO6" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000622 ! A1-7 ventral oblique muscle 6 (Drosophila) is_a: FBbt:00000881 ! abdominal 6 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000888 name: abdominal 6 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 longitudinal muscle (FBbt:00000598) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) is_a: FBbt:00000862 ! hypodermal muscle of larval abdominal 6 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000889 name: abdominal 6 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle (FBbt:00000599) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) is_a: FBbt:00000888 ! abdominal 6 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000890 name: abdominal 6 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle 1 (FBbt:00000600) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000600 ! A1-7 lateral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000889 ! abdominal 6 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000891 name: abdominal 6 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle (FBbt:00000601) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) is_a: FBbt:00000888 ! abdominal 6 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000892 name: abdominal 6 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 1 (FBbt:00000602) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000602 ! A1-7 ventral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000891 ! abdominal 6 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000893 name: abdominal 6 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 2 (FBbt:00000603) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000603 ! A1-7 ventral longitudinal muscle 2 (Drosophila) is_a: FBbt:00000891 ! abdominal 6 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000894 name: abdominal 6 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 3 (FBbt:00000604) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) is_a: FBbt:00000891 ! abdominal 6 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000895 name: abdominal 6 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 4 (FBbt:00000605) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) is_a: FBbt:00000891 ! abdominal 6 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000896 name: abdominal 6 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 segment border muscle (FBbt:00000606) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000606 ! A1-7 segment border muscle (Drosophila) is_a: FBbt:00000862 ! hypodermal muscle of larval abdominal 6 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000897 name: abdominal 6 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 transverse muscle (FBbt:00000623) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) is_a: FBbt:00000862 ! hypodermal muscle of larval abdominal 6 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000898 name: abdominal 6 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle (FBbt:00000624) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) is_a: FBbt:00000897 ! abdominal 6 transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000899 name: abdominal 6 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle 1 (FBbt:00000625) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000625 ! A1-7 dorsal transverse muscle 1 (Drosophila) is_a: FBbt:00000898 ! abdominal 6 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000900 name: abdominal 6 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle (FBbt:00000626) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) is_a: FBbt:00000897 ! abdominal 6 transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000901 name: abdominal 6 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 1 (FBbt:00000627) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000627 ! A1-7 lateral transverse muscle 1 (Drosophila) is_a: FBbt:00000900 ! abdominal 6 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000902 name: abdominal 6 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 2 (FBbt:00000628) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000628 ! A1-7 lateral transverse muscle 2 (Drosophila) is_a: FBbt:00000900 ! abdominal 6 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000903 name: abdominal 6 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 3 (FBbt:00000629) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000629 ! A1-7 lateral transverse muscle 3 (Drosophila) is_a: FBbt:00000900 ! abdominal 6 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000904 name: abdominal 6 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 4 (FBbt:00000630) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000630 ! A1-7 lateral transverse muscle 4 (Drosophila) is_a: FBbt:00000900 ! abdominal 6 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000905 name: abdominal 6 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral transverse muscle (FBbt:00000631) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) is_a: FBbt:00000897 ! abdominal 6 transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000906 name: abdominal 6 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A2-7 ventral transverse muscle 1 (FBbt:00000632) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A6 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) is_a: FBbt:00000905 ! abdominal 6 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00000907 name: hypodermal muscle of larval abdominal 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any hypodermal muscle of larval abdomen (FBbt:00000681) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000908 name: abdominal 7 acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 acute muscle (FBbt:00000589) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000589 ! A1-7 acute muscle (Drosophila) is_a: FBbt:00000907 ! hypodermal muscle of larval abdominal 7 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000909 name: abdominal 7 dorsal acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle (FBbt:00000590) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000590 ! A1-7 dorsal acute muscle (Drosophila) is_a: FBbt:00000908 ! abdominal 7 acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000910 name: abdominal 7 dorsal acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 1 (FBbt:00000591) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000591 ! A1-7 dorsal acute muscle 1 (Drosophila) is_a: FBbt:00000909 ! abdominal 7 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000911 name: abdominal 7 dorsal acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 2 (FBbt:00000592) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000592 ! A1-7 dorsal acute muscle 2 (Drosophila) is_a: FBbt:00000909 ! abdominal 7 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000912 name: abdominal 7 dorsal acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal acute muscle 3 (FBbt:00000593) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000593 ! A1-7 dorsal acute muscle 3 (Drosophila) is_a: FBbt:00000909 ! abdominal 7 dorsal acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000913 name: abdominal 7 ventral acute muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle (FBbt:00000594) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VA" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000594 ! A1-7 ventral acute muscle (Drosophila) is_a: FBbt:00000908 ! abdominal 7 acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000914 name: abdominal 7 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 1 (FBbt:00000595) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000595 ! A1-7 ventral acute muscle 1 (Drosophila) is_a: FBbt:00000913 ! abdominal 7 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000915 name: abdominal 7 ventral acute muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 2 (FBbt:00000596) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VA2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000596 ! A1-7 ventral acute muscle 2 (Drosophila) is_a: FBbt:00000913 ! abdominal 7 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000916 name: abdominal 7 ventral acute muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral acute muscle 3 (FBbt:00000597) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VA3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000597 ! A1-7 ventral acute muscle 3 (Drosophila) is_a: FBbt:00000913 ! abdominal 7 ventral acute muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000917 name: abdominal 7 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 oblique muscle (FBbt:00000607) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) is_a: FBbt:00000907 ! hypodermal muscle of larval abdominal 7 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000918 name: abdominal 7 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle (FBbt:00000608) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) is_a: FBbt:00000917 ! abdominal 7 oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000919 name: abdominal 7 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 1 (FBbt:00000609) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000609 ! A1-7 dorsal oblique muscle 1 (Drosophila) is_a: FBbt:00000918 ! abdominal 7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000920 name: abdominal 7 dorsal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 2 (FBbt:00000610) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000610 ! A1-7 dorsal oblique muscle 2 (Drosophila) is_a: FBbt:00000918 ! abdominal 7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000921 name: abdominal 7 dorsal oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 3 (FBbt:00000611) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000611 ! A1-7 dorsal oblique muscle 3 (Drosophila) is_a: FBbt:00000918 ! abdominal 7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000922 name: abdominal 7 dorsal oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 4 (FBbt:00000612) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000612 ! A1-7 dorsal oblique muscle 4 (Drosophila) is_a: FBbt:00000918 ! abdominal 7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000923 name: abdominal 7 dorsal oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal oblique muscle 5 (FBbt:00000613) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000613 ! A1-7 dorsal oblique muscle 5 (Drosophila) is_a: FBbt:00000918 ! abdominal 7 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000924 name: abdominal 7 lateral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle (FBbt:00000614) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000614 ! A1-7 lateral oblique muscle (Drosophila) is_a: FBbt:00000917 ! abdominal 7 oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000925 name: abdominal 7 lateral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral oblique muscle 1 (FBbt:00000615) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 LO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000615 ! A1-7 lateral oblique muscle 1 (Drosophila) is_a: FBbt:00000924 ! abdominal 7 lateral oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000926 name: abdominal 7 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle (FBbt:00000616) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000616 ! A1-7 ventral oblique muscle (Drosophila) is_a: FBbt:00000917 ! abdominal 7 oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000927 name: abdominal 7 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 1 (FBbt:00000617) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000617 ! A1-7 ventral oblique muscle 1 (Drosophila) is_a: FBbt:00000926 ! abdominal 7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000928 name: abdominal 7 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 2 (FBbt:00000618) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000618 ! A1-7 ventral oblique muscle 2 (Drosophila) is_a: FBbt:00000926 ! abdominal 7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000929 name: abdominal 7 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 3 (FBbt:00000619) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000619 ! A1-7 ventral oblique muscle 3 (Drosophila) is_a: FBbt:00000926 ! abdominal 7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000930 name: abdominal 7 ventral oblique muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral oblique muscle of larval abdominal segment 7. Its posterior end extends into abdominal segment 8 where it attaches to an intrasegmental apodeme." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A7 VO4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000620 ! A1-7 ventral oblique muscle 4 (Drosophila) [Term] id: FBbt:00000931 name: abdominal 7 ventral oblique muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "The fifth dorsal-most ventral oblique muscle of larval abdominal segment 7. Its posterior end extends into abdominal segment 8 where it attaches to an intrasegmental apodeme." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A7 VO5" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000621 ! A1-7 ventral oblique muscle 5 (Drosophila) [Term] id: FBbt:00000932 name: abdominal 7 ventral oblique muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral oblique muscle 6 (FBbt:00000622) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VO6" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000622 ! A1-7 ventral oblique muscle 6 (Drosophila) is_a: FBbt:00000926 ! abdominal 7 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000933 name: abdominal 7 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 longitudinal muscle (FBbt:00000598) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000598 ! A1-7 longitudinal muscle (Drosophila) is_a: FBbt:00000907 ! hypodermal muscle of larval abdominal 7 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000934 name: abdominal 7 lateral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle (FBbt:00000599) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000599 ! A1-7 lateral longitudinal muscle (Drosophila) is_a: FBbt:00000933 ! abdominal 7 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000935 name: abdominal 7 lateral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral longitudinal muscle 1 (FBbt:00000600) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 LL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000600 ! A1-7 lateral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000934 ! abdominal 7 lateral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000936 name: abdominal 7 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle (FBbt:00000601) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000601 ! A1-7 ventral longitudinal muscle (Drosophila) is_a: FBbt:00000933 ! abdominal 7 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000937 name: abdominal 7 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 1 (FBbt:00000602) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000602 ! A1-7 ventral longitudinal muscle 1 (Drosophila) is_a: FBbt:00000936 ! abdominal 7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000938 name: abdominal 7 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 2 (FBbt:00000603) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000603 ! A1-7 ventral longitudinal muscle 2 (Drosophila) is_a: FBbt:00000936 ! abdominal 7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000939 name: abdominal 7 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 3 (FBbt:00000604) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000604 ! A1-7 ventral longitudinal muscle 3 (Drosophila) is_a: FBbt:00000936 ! abdominal 7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000940 name: abdominal 7 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral longitudinal muscle 4 (FBbt:00000605) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000605 ! A1-7 ventral longitudinal muscle 4 (Drosophila) is_a: FBbt:00000936 ! abdominal 7 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000941 name: abdominal 7 segment border muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 segment border muscle (FBbt:00000606) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 SBM" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000606 ! A1-7 segment border muscle (Drosophila) is_a: FBbt:00000907 ! hypodermal muscle of larval abdominal 7 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000942 name: abdominal 7 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 transverse muscle (FBbt:00000623) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000623 ! A1-7 transverse muscle (Drosophila) is_a: FBbt:00000907 ! hypodermal muscle of larval abdominal 7 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000943 name: abdominal 7 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle (FBbt:00000624) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000624 ! A1-7 dorsal transverse muscle (Drosophila) is_a: FBbt:00000942 ! abdominal 7 transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000944 name: abdominal 7 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 dorsal transverse muscle 1 (FBbt:00000625) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000625 ! A1-7 dorsal transverse muscle 1 (Drosophila) is_a: FBbt:00000943 ! abdominal 7 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000945 name: abdominal 7 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle (FBbt:00000626) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000626 ! A1-7 lateral transverse muscle (Drosophila) is_a: FBbt:00000942 ! abdominal 7 transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000946 name: abdominal 7 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 1 (FBbt:00000627) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000627 ! A1-7 lateral transverse muscle 1 (Drosophila) is_a: FBbt:00000945 ! abdominal 7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000947 name: abdominal 7 lateral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 2 (FBbt:00000628) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 LT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000628 ! A1-7 lateral transverse muscle 2 (Drosophila) is_a: FBbt:00000945 ! abdominal 7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000948 name: abdominal 7 lateral transverse muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 3 (FBbt:00000629) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 LT3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000629 ! A1-7 lateral transverse muscle 3 (Drosophila) is_a: FBbt:00000945 ! abdominal 7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000949 name: abdominal 7 lateral transverse muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 lateral transverse muscle 4 (FBbt:00000630) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 LT4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000630 ! A1-7 lateral transverse muscle 4 (Drosophila) is_a: FBbt:00000945 ! abdominal 7 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000950 name: abdominal 7 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any A1-7 ventral transverse muscle (FBbt:00000631) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000631 ! A1-7 ventral transverse muscle (Drosophila) is_a: FBbt:00000942 ! abdominal 7 transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000951 name: abdominal 7 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any A2-7 ventral transverse muscle 1 (FBbt:00000632) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A7 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000632 ! A2-7 ventral transverse muscle 1 (Drosophila) is_a: FBbt:00000950 ! abdominal 7 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00000952 name: hypodermal muscle of abdominal 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000953 name: abdominal 8 oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any oblique muscle (FBbt:00000466) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000466 ! oblique muscle (Drosophila) is_a: FBbt:00000952 ! hypodermal muscle of abdominal 8 (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000954 name: abdominal 8 dorsal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal oblique muscle (FBbt:00000467) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DO" RELATED [] is_a: FBbt:00000467 ! dorsal oblique muscle (Drosophila) is_a: FBbt:00000953 ! abdominal 8 oblique muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000955 name: abdominal 8 dorsal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only dorsal oblique muscle in larval abdominal segment 8. It is much shorter and narrower than dorsal oblique muscles of larval segments A1-7. It inserts caudally into the epidermis, anterior to and above the posterior spiracle." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 DO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A8 deo1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000954 ! abdominal 8 dorsal oblique muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000956 name: abdominal 8 ventral oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral oblique muscle (FBbt:00000469) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A8 VO" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000469 ! ventral oblique muscle (Drosophila) is_a: FBbt:00000953 ! abdominal 8 oblique muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000957 name: abdominal 8 ventral oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral oblique muscle of embryonic/larval abdominal segment 8." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 VO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000956 ! abdominal 8 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000958 name: abdominal 8 ventral oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral oblique muscle of embryonic/larval abdominal segment 8." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 VO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A8 veo1" EXACT [FlyBase:FBrf0041814] synonym: "ventral external oblique muscle 1 of A8" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000956 ! abdominal 8 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000959 name: abdominal 8 ventral oblique muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most ventral oblique muscle of embryonic/larval abdominal segment 8." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 VO3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000956 ! abdominal 8 ventral oblique muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000960 name: abdominal 8 transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any transverse muscle (FBbt:00000470) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000470 ! transverse muscle (Drosophila) is_a: FBbt:00000952 ! hypodermal muscle of abdominal 8 (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000961 name: abdominal 8 dorsal transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal transverse muscle (FBbt:00000471) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A8 DT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "dorsal internal oblique muscle of A8" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000471 ! dorsal transverse muscle (Drosophila) is_a: FBbt:00000960 ! abdominal 8 transverse muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000962 name: abdominal 8 dorsal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only dorsal transverse muscle in larval abdominal segment 8." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 DT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A8 dio1" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000961 ! abdominal 8 dorsal transverse muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000963 name: abdominal 8 lateral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral transverse muscle (FBbt:00000472) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A8 LT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A8 pet1" EXACT [FlyBase:FBrf0041814] synonym: "pleural external transverse muscle of A8" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000472 ! lateral transverse muscle (Drosophila) is_a: FBbt:00000960 ! abdominal 8 transverse muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000964 name: abdominal 8 lateral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only lateral transverse muscle in larval abdominal segment 8." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 LT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000963 ! abdominal 8 lateral transverse muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000965 name: abdominal 8 ventral transverse muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral transverse muscle (FBbt:00000473) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A8 VT" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000473 ! ventral transverse muscle (Drosophila) is_a: FBbt:00000960 ! abdominal 8 transverse muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000966 name: abdominal 8 ventral transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The anterior-most transverse muscle in larval abdominal segment 8, located close to the segment boundary with A7." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 VT1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000965 ! abdominal 8 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000967 name: abdominal 8 ventral transverse muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second anterior-most transverse muscle in larval abdominal segment 8, located close to abdominal 8 ventral transverse muscle 1." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 VT2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000965 ! abdominal 8 ventral transverse muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000968 name: abdominal 8 longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any longitudinal muscle (FBbt:00000480) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000480 ! longitudinal muscle (Drosophila) is_a: FBbt:00000952 ! hypodermal muscle of abdominal 8 (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000969 name: abdominal 8 ventral longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral longitudinal muscle (FBbt:00000482) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "A8 VL" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "srm" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000482 ! ventral longitudinal muscle (Drosophila) is_a: FBbt:00000968 ! abdominal 8 longitudinal muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000970 name: abdominal 8 ventral longitudinal muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral longitudinal muscle in larval abdominal segment 8." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "A8 VL1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "spiracle retractor muscle" EXACT [FlyBase:FBrf0041814] synonym: "srm" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000969 ! abdominal 8 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000971 name: abdominal 8 ventral longitudinal muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second dorsal-most ventral longitudinal muscle in larval abdominal segment 8." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A8 VL2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "spiracle retractor muscle" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000969 ! abdominal 8 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000972 name: abdominal 8 ventral longitudinal muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third dorsal-most ventral longitudinal muscle in larval abdominal segment 8." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A8 VL3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A8 pl1" EXACT [FlyBase:FBrf0041814] synonym: "pleural muscle 1 of A8" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000969 ! abdominal 8 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000973 name: abdominal 8 ventral longitudinal muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The fourth dorsal-most ventral longitudinal muscle in larval abdominal segment 8." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "A8 VL4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A8 vio1" EXACT [FlyBase:FBrf0041814] synonym: "ventral internal oblique muscle of A8" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000969 ! abdominal 8 ventral longitudinal muscle (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00000974 name: hypodermal muscle of abdominal 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval hypodermal muscle (FBbt:00000465) that is part of some larval abdominal segment 9 (FBbt:00001756)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00000975 name: abdominal 9 oblique muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000607 ! A1-7 oblique muscle (Drosophila) consider: FBbt:00000953 ! abdominal 8 oblique muscle (Drosophila) consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) comment: According to Campos-Ortega and Hartenstein, 1997, there are no dorsal group muscles in A9. subset: cur ! cur [Term] id: FBbt:00000976 name: abdominal 9 dorsal oblique muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000608 ! A1-7 dorsal oblique muscle (Drosophila) consider: FBbt:00000953 ! abdominal 8 oblique muscle (Drosophila) consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) comment: According to Campos-Ortega and Hartenstein, 1997, there are no dorsal group muscles in A9. subset: cur ! cur [Term] id: FBbt:00000977 name: abdominal 9 dorsal oblique muscle 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) comment: According to Campos-Ortega and Hartenstein, 1997, there are no dorsal group muscles in A9. subset: cur ! cur [Term] id: FBbt:00000978 name: abdominal 9 ventral oblique muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000979 name: abdominal 9 ventral oblique muscle 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000980 name: abdominal 9 ventral oblique muscle 2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000981 name: abdominal 9 ventral oblique muscle 3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000982 name: abdominal 9 transverse muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000983 name: abdominal 9 dorsal transverse muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) comment: According to Campos-Ortega and Hartenstein, 1997, there are no dorsal group muscles in A9. subset: cur ! cur [Term] id: FBbt:00000984 name: abdominal 9 dorsal transverse muscle 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) comment: According to Campos-Ortega and Hartenstein, 1997, there are no dorsal group muscles in A9. subset: cur ! cur [Term] id: FBbt:00000985 name: abdominal 9 lateral transverse muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) comment: According to Campos-Ortega and Hartenstein, 1997, there are no lateral group muscles in A9. subset: cur ! cur [Term] id: FBbt:00000986 name: abdominal 9 lateral transverse muscle 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) comment: According to Campos-Ortega and Hartenstein, 1997, there are no lateral group muscles in A9. subset: cur ! cur [Term] id: FBbt:00000987 name: abdominal 9 ventral transverse muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000988 name: abdominal 9 ventral transverse muscle 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000989 name: abdominal 9 ventral transverse muscle 2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000990 name: abdominal 9 longitudinal muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000991 name: abdominal 9 ventral longitudinal muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000992 name: abdominal 9 ventral longitudinal muscle 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000993 name: abdominal 9 ventral longitudinal muscle 2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000994 name: abdominal 9 ventral longitudinal muscle 3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000995 name: abdominal 9 ventral longitudinal muscle 4 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000974 ! hypodermal muscle of abdominal 9 (Drosophila) subset: cur ! cur [Term] id: FBbt:00000996 name: terminal transverse muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most transverse muscle of the larva. Its dorsal end attaches near the base of the posterior spiracle." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "TT1" RELATED [] is_a: FBbt:00000470 ! transverse muscle (Drosophila) is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00000997 name: terminal oblique muscle (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval oblique muscle whose posterior end is attached to the posterior integument and whose anterior is attached to the vertical-median septum of the A8/9 intersegmental apodeme (Campos-Ortega and Hartenstein, 1997, pg 121)." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "TO" RELATED [] is_a: FBbt:00000466 ! oblique muscle (Drosophila) is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00000998 name: terminal oblique muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Most dorsal of the two terminal oblique muscles." [FlyBase:FBrf0064793] comment: Maybe - spiracular retractor muscle. subset: cur ! cur synonym: "TO1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000997 ! terminal oblique muscle (Drosophila) [Term] id: FBbt:00000999 name: terminal oblique muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Most ventral of the two terminal oblique muscles." [FlyBase:FBrf0064793] comment: Maybe - spiracular retractor muscle. subset: cur ! cur synonym: "TO2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000997 ! terminal oblique muscle (Drosophila) [Term] id: FBbt:00001000 name: gut suspension muscle (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic/larval hypodermal muscle, one end of which inserts into the epidermis and the other into the distal hindgut." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur synonym: "GS" RELATED [] is_a: FBbt:00000681 ! hypodermal muscle of larval abdomen (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001001 name: gut suspension muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The anterior-most of the embryonic/larval gut suspension muscles. It has an oblique orientation, with its posterior end attached to the hindgut." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur synonym: "GS1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00001000 ! gut suspension muscle (Drosophila) [Term] id: FBbt:00001002 name: gut suspension muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "The second anterior-most of the embryonic/larval gut suspension muscles. It has an oblique orientation, with its posterior end attached to the hindgut." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] comment: Maybe - para-anal muscle. subset: cur ! cur synonym: "GS2" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00001000 ! gut suspension muscle (Drosophila) [Term] id: FBbt:00001003 name: gut suspension muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "The third anterior-most of the embryonic/larval gut suspension muscles. It has an acute orientation with its anterior end attached to the hindgut." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur synonym: "GS3" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00001000 ! gut suspension muscle (Drosophila) [Term] id: FBbt:00001004 name: gut suspension muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "The most posterior of the embryonic/larval gut suspension muscles. It has a longitudinal orientation, with its posterior end attached to the posterior integument and anterior end to the hindgut." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur synonym: "GS4" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00001000 ! gut suspension muscle (Drosophila) [Term] id: FBbt:00001005 name: embryonic/larval apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Apodeme that is part of the embryo/larva." [FBC:SPR] subset: cur ! cur synonym: "larval apodeme" EXACT [] is_a: FBbt:00005091 ! apodeme (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001006 name: embryonic/larval abdominal apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any apodeme (FBbt:00005091) that is part of some late embryo (FBbt:00005333) and that is part of some abdomen (FBbt:00000020) and that is part of some larva (FBbt:00001727)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001005 ! embryonic/larval apodeme (Drosophila) is_a: FBbt:00007585 ! abdominal apodeme (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001007 name: embryonic/larval intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Apodeme located at the boundary between two segments." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur synonym: "iapo" EXACT [FlyBase:FBrf0058826, FlyBase:FBrf0089570] is_a: FBbt:00001005 ! embryonic/larval apodeme (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001008 name: embryonic/larval abdominal intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Apodeme located at the boundary between two abdominal segments." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001006 ! embryonic/larval abdominal apodeme (Drosophila) is_a: FBbt:00001007 ! embryonic/larval intersegmental apodeme (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00001009 name: embryonic/larval abdominal 1 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval intersegmental apodeme (FBbt:00001007) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001017 ! embryonic/larval A1-7 intersegmental apodeme (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001010 name: embryonic/larval abdominal 2 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval intersegmental apodeme (FBbt:00001007) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001017 ! embryonic/larval A1-7 intersegmental apodeme (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001011 name: embryonic/larval abdominal 3 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval intersegmental apodeme (FBbt:00001007) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001017 ! embryonic/larval A1-7 intersegmental apodeme (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001012 name: embryonic/larval abdominal 4 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval intersegmental apodeme (FBbt:00001007) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001017 ! embryonic/larval A1-7 intersegmental apodeme (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001013 name: embryonic/larval abdominal 5 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval intersegmental apodeme (FBbt:00001007) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001017 ! embryonic/larval A1-7 intersegmental apodeme (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001014 name: embryonic/larval abdominal 6 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval intersegmental apodeme (FBbt:00001007) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001017 ! embryonic/larval A1-7 intersegmental apodeme (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001015 name: embryonic/larval abdominal 7 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "An embryonic/larval apodeme at the boundary of A7 and A8." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001017 ! embryonic/larval A1-7 intersegmental apodeme (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001016 name: embryonic/larval intrasegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "An embryonic/larval apodeme that is located within a segment, not at the boundary between segments." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur synonym: "INA" EXACT [FlyBase:FBrf0058826, FlyBase:FBrf0089570] is_a: FBbt:00001005 ! embryonic/larval apodeme (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001017 name: embryonic/larval A1-7 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental apodeme of embryonic/larval segments A1-7. It is the insertion site for longitudinal and ventral oblique muscles of A1-7 (Campos-Ortega and Hartenstein, 1997, pg 172)." [FlyBase:FBrf0058826, FlyBase:FBrf0089570] is_a: FBbt:00001008 ! embryonic/larval abdominal intersegmental apodeme (Drosophila) is_a: FBbt:00005089 ! muscle attachment site (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001019 name: embryonic/larval abdominal 1 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001018 def: "Any embryonic/larval A1-7 intrasegmental apodeme 1 (FBbt:00001021) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001021 ! embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001020 name: embryonic/larval abdominal 1 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 2 (FBbt:00001028) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001028 ! embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001021 name: embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most of the two intrasegmental apodemes located in each embryonic/larval segment A1-7. It is the site of insertion of A1-7 ventral acute muscles 1 and 2 (also known as vs3 and vs2 respectively)." [FlyBase:FBrf0041814, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur synonym: "anterior intrasegmental apodeme of abdominal segment" EXACT [] synonym: "ina1" EXACT [FlyBase:FBrf0058826, FlyBase:FBrf0089570] is_a: FBbt:00001006 ! embryonic/larval abdominal apodeme (Drosophila) is_a: FBbt:00001016 ! embryonic/larval intrasegmental apodeme (Drosophila) is_a: FBbt:00005089 ! muscle attachment site (Drosophila) relationship: part_of FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001022 name: embryonic/larval abdominal 2 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 1 (FBbt:00001021) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001021 ! embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001023 name: embryonic/larval abdominal 3 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 1 (FBbt:00001021) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001021 ! embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001024 name: embryonic/larval abdominal 4 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 1 (FBbt:00001021) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001021 ! embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001025 name: embryonic/larval abdominal 5 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 1 (FBbt:00001021) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001021 ! embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001026 name: embryonic/larval abdominal 6 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 1 (FBbt:00001021) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001021 ! embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001027 name: embryonic/larval abdominal 7 intrasegmental apodeme 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 1 (FBbt:00001021) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001021 ! embryonic/larval A1-7 intrasegmental apodeme 1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001028 name: embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most of the two intrasegmental apodemes located in each embryonic/larval abdominal segment. It is the insertion site for A1-7 ventral acute muscle 3 (also known as vs1)." [FlyBase:FBrf0041814, FlyBase:FBrf0089570] subset: cur ! cur synonym: "ina2" EXACT [FlyBase:FBrf0058826, FlyBase:FBrf0089570] is_a: FBbt:00001006 ! embryonic/larval abdominal apodeme (Drosophila) is_a: FBbt:00001016 ! embryonic/larval intrasegmental apodeme (Drosophila) is_a: FBbt:00005089 ! muscle attachment site (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001029 name: embryonic/larval abdominal 2 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 2 (FBbt:00001028) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001028 ! embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001030 name: embryonic/larval abdominal 3 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 2 (FBbt:00001028) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001028 ! embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001031 name: embryonic/larval abdominal 4 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 2 (FBbt:00001028) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001028 ! embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001032 name: embryonic/larval abdominal 5 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 2 (FBbt:00001028) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001028 ! embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001033 name: embryonic/larval abdominal 6 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 2 (FBbt:00001028) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001028 ! embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001034 name: embryonic/larval abdominal 7 intrasegmental apodeme 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval A1-7 intrasegmental apodeme 2 (FBbt:00001028) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0058826, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001028 ! embryonic/larval A1-7 intrasegmental apodeme 2 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001035 name: embryonic/larval visceral muscle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005654 def: "Muscle of the embryonic/larval intestinal tract. Circular and longitudinal fibers surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval visceral muscle" EXACT [] is_a: FBbt:00005070 ! visceral muscle (Drosophila) relationship: part_of FBbt:00000462 ! embryonic/larval muscle system (Drosophila) [Term] id: FBbt:00001036 name: embryonic/larval heart visceral muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001035 ! embryonic/larval visceral muscle (Drosophila) relationship: part_of FBbt:00001675 ! embryonic/larval heart (Drosophila) [Term] id: FBbt:00001037 name: dorsal fibers of larval heart (Drosophila) namespace: fly_anatomy.ontology def: "Fibers attaching the dorsal vessel to the roof of the dorsal sinus." [FlyBase:FBrf0031012] subset: cur ! cur is_a: FBbt:00001036 ! embryonic/larval heart visceral muscle (Drosophila) [Term] id: FBbt:00001038 name: caudal fibers of larval heart (Drosophila) namespace: fly_anatomy.ontology def: "Fine fibers from the posterior of the embryonic/larval heart that, along with the caudal ostial fibers, anchor the posterior of the heart between the posterior spiracles." [FlyBase:FBrf0031012] comment: Figure 7 of Rizki, (1978), details these structures. subset: cur ! cur synonym: "caudal end fibers" EXACT [FlyBase:FBrf0031012] is_a: FBbt:00001036 ! embryonic/larval heart visceral muscle (Drosophila) [Term] id: FBbt:00001039 name: caudal ostial fibers of larval heart (Drosophila) namespace: fly_anatomy.ontology def: "Fine fibers from the embryonic/larval ostia 3 that, along with the caudal end fibers, anchor the posterior of the heart between the posterior spiracles." [FlyBase:FBrf0031012] comment: Figure 7 of Rizki, (1978), details these structures. subset: cur ! cur is_a: FBbt:00001036 ! embryonic/larval heart visceral muscle (Drosophila) [Term] id: FBbt:00001040 name: embryonic/larval alary muscle (Drosophila) namespace: fly_anatomy.ontology def: "Muscle that is attached dorsally to the cardiac tube and laterally to the body wall. Contractions of the alary muscles control hemolymph inflow and support the cardiac tube." [FlyBase:FBrf0208061] subset: cur ! cur synonym: "ligaments" RELATED [] is_a: FBbt:00001036 ! embryonic/larval heart visceral muscle (Drosophila) [Term] id: FBbt:00001041 name: embryonic/larval alary muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "Paired embryonic/larval alary muscle located on the border of embryonic/larval segments A1/A2." [FlyBase:FBrf0064793, FlyBase:FBrf0200797] subset: cur ! cur is_a: FBbt:00001040 ! embryonic/larval alary muscle (Drosophila) [Term] id: FBbt:00001042 name: embryonic/larval alary muscle 2 (Drosophila) namespace: fly_anatomy.ontology def: "Paired embryonic/larval alary muscle located on the border of embryonic/larval segments A2/A3." [FlyBase:FBrf0064793, FlyBase:FBrf0200797] subset: cur ! cur is_a: FBbt:00001040 ! embryonic/larval alary muscle (Drosophila) [Term] id: FBbt:00001043 name: embryonic/larval alary muscle 3 (Drosophila) namespace: fly_anatomy.ontology def: "Paired embryonic/larval alary muscle located on the border of embryonic/larval segments A3/A4." [FlyBase:FBrf0064793, FlyBase:FBrf0200797] subset: cur ! cur is_a: FBbt:00001040 ! embryonic/larval alary muscle (Drosophila) [Term] id: FBbt:00001044 name: embryonic/larval alary muscle 4 (Drosophila) namespace: fly_anatomy.ontology def: "Paired embryonic/larval alary muscle located on the border of embryonic/larval segments A4/A5." [FlyBase:FBrf0064793, FlyBase:FBrf0200797] subset: cur ! cur is_a: FBbt:00001040 ! embryonic/larval alary muscle (Drosophila) [Term] id: FBbt:00001045 name: embryonic/larval alary muscle 5 (Drosophila) namespace: fly_anatomy.ontology def: "Paired embryonic/larval alary muscle located on the border of embryonic/larval segments A5/A6." [FlyBase:FBrf0064793, FlyBase:FBrf0200797] subset: cur ! cur is_a: FBbt:00001040 ! embryonic/larval alary muscle (Drosophila) [Term] id: FBbt:00001046 name: embryonic/larval alary muscle 6 (Drosophila) namespace: fly_anatomy.ontology def: "Paired embryonic/larval alary muscle located on the border of embryonic/larval segments A6/A7." [FlyBase:FBrf0064793, FlyBase:FBrf0200797] subset: cur ! cur is_a: FBbt:00001040 ! embryonic/larval alary muscle (Drosophila) [Term] id: FBbt:00001047 name: embryonic/larval alary muscle 7 (Drosophila) namespace: fly_anatomy.ontology def: "Paired embryonic/larval alary muscle located on the border of embryonic/larval segments A7/A8." [FlyBase:FBrf0064793, FlyBase:FBrf0200797] subset: cur ! cur is_a: FBbt:00001040 ! embryonic/larval alary muscle (Drosophila) [Term] id: FBbt:00001048 name: circular muscle of larval heart (Drosophila) namespace: fly_anatomy.ontology def: "Circumscribing muscle on the outside of the embryonic/larval heart." [FlyBase:FBrf0031012] subset: cur ! cur is_a: FBbt:00001036 ! embryonic/larval heart visceral muscle (Drosophila) [Term] id: FBbt:00001049 name: embryonic/larval esophageal muscle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005656 subset: cur ! cur synonym: "larval esophageal muscle" EXACT [] is_a: FBbt:00001035 ! embryonic/larval visceral muscle (Drosophila) relationship: part_of FBbt:00001870 ! embryonic/larval esophagus (Drosophila) [Term] id: FBbt:00001050 name: proventricular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001035 ! embryonic/larval visceral muscle (Drosophila) relationship: part_of FBbt:00001871 ! embryonic/larval proventriculus (Drosophila) [Term] id: FBbt:00001051 name: midgut muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001035 ! embryonic/larval visceral muscle (Drosophila) is_a: FBbt:00001886 ! embryonic/larval midgut cell (Drosophila) relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001052 name: outer sheath cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0057603] subset: cur ! cur is_a: FBbt:00001051 ! midgut muscle (Drosophila) [Term] id: FBbt:00001053 name: hindgut muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001035 ! embryonic/larval visceral muscle (Drosophila) relationship: part_of FBbt:00001891 ! embryonic/larval hindgut (Drosophila) [Term] id: FBbt:00001054 name: embryonic/larval gonadal sheath muscle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005658 subset: cur ! cur synonym: "larval gonadal sheath muscle" EXACT [] is_a: FBbt:00001035 ! embryonic/larval visceral muscle (Drosophila) relationship: develops_from FBbt:00005473 ! gonadal sheath proper primordium (Drosophila) relationship: part_of UBERON:0004909 ! epithelium of gonad [Term] id: FBbt:00001055 name: presumptive embryonic/larval nervous system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval nervous system." [FlyBase:FBrf0031012] subset: cur ! cur synonym: "embryonic central nervous system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00001056 name: presumptive embryonic/larval central nervous system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval central nervous system." [FlyBase:FBrf0031012] subset: cur ! cur synonym: "embryonic central nervous system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001057 name: neurogenic region (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000924 ! ectoderm [Term] id: FBbt:00001058 name: procephalic neurogenic region (Drosophila) namespace: fly_anatomy.ontology def: "Tissue which becomes morphologically distinct shortly after cephalic furrow formation as two strips of about 80 enlarged cells which extend dorso-ventrally on either side of the developing head." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001057 ! neurogenic region (Drosophila) relationship: part_of FBbt:00000119 ! anterior ectoderm (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00001059 name: visual primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 VisSys" RELATED [FBC:ds555] synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005434 ! visual anlage (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00001060 name: embryonic brain (Drosophila) namespace: fly_anatomy.ontology def: "Brain of the embryo." [FBC:SPR] subset: cur ! cur is_a: UBERON:0000955 ! brain relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001062 name: embryonic supraesophageal neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001063 name: embryonic protocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001062 ! embryonic supraesophageal neuromere (Drosophila) relationship: part_of FBbt:00000159 ! embryonic labral segment (Drosophila) [Term] id: FBbt:00001064 name: embryonic deuterocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "embryonic deutocerebral neuromere" EXACT [] is_a: FBbt:00001062 ! embryonic supraesophageal neuromere (Drosophila) relationship: part_of FBbt:00000160 ! embryonic antennal segment (Drosophila) [Term] id: FBbt:00001065 name: embryonic tritocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001062 ! embryonic supraesophageal neuromere (Drosophila) relationship: part_of FBbt:00000161 ! embryonic intercalary segment (Drosophila) [Term] id: FBbt:00001066 name: embryonic protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Protocerebrum of the embryo." [FBC:SPR] subset: cur ! cur is_a: FBbt:00003627 ! protocerebrum (Drosophila) relationship: develops_from FBbt:00005549 ! protocerebrum primordium (Drosophila) relationship: part_of FBbt:00000159 ! embryonic labral segment (Drosophila) relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001067 name: embryonic deuterocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Deuterocerebrum of the embryo." [FBC:SPR] subset: cur ! cur synonym: "embryonic deutocerebrum" EXACT [] is_a: FBbt:00003923 ! deuterocerebrum (Drosophila) relationship: part_of FBbt:00000160 ! embryonic antennal segment (Drosophila) relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001068 name: embryonic tritocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Tritocerebrum of the embryonic brain." [FBC:SPR] subset: cur ! cur is_a: FBbt:00003999 ! tritocerebrum (Drosophila) relationship: part_of FBbt:00000161 ! embryonic intercalary segment (Drosophila) relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001069 name: embryonic stomatogastric nervous system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005096 ! stomatogastric nervous system (Drosophila) relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001070 name: precursor cell of the stomatogastric nervous system (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0078614] subset: cur ! cur synonym: "SNSPs" RELATED [] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001069 ! embryonic stomatogastric nervous system (Drosophila) [Term] id: FBbt:00001071 name: invaginating stomatogastric nervous system precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "iSNSPs" RELATED [] is_a: FBbt:00001070 ! precursor cell of the stomatogastric nervous system (Drosophila) [Term] id: FBbt:00001072 name: rostral vesicle of iSNSP (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "rostral pouch" RELATED [] is_a: FBbt:00001071 ! invaginating stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001073 name: intermediate vesicle of iSNSP (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "intermediate pouch" RELATED [] is_a: FBbt:00001071 ! invaginating stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001074 name: caudal vesicle of iSNSP (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "caudal pouch" RELATED [] is_a: FBbt:00001071 ! invaginating stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001075 name: tip stomatogastric nervous system precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tSNSPs" RELATED [] is_a: FBbt:00001070 ! precursor cell of the stomatogastric nervous system (Drosophila) [Term] id: FBbt:00001076 name: rostral vesicle of tSNSP (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tSNSP" RELATED [] is_a: FBbt:00001075 ! tip stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001077 name: intermediate vesicle of tSNSP (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tSNSP" RELATED [] is_a: FBbt:00001075 ! tip stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001078 name: caudal vesicle of tSNSP (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tSNSP" RELATED [] is_a: FBbt:00001075 ! tip stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001079 name: delaminating stomatogastric nervous system precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dSNSPs" RELATED [] is_a: FBbt:00001070 ! precursor cell of the stomatogastric nervous system (Drosophila) [Term] id: FBbt:00001080 name: medial delaminating stomatogastric nervous system precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001079 ! delaminating stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001081 name: lateral delaminating stomatogastric nervous system precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001079 ! delaminating stomatogastric nervous system precursor (Drosophila) [Term] id: FBbt:00001082 name: embryonic ventral nervous system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005097 ! ventral nervous system (Drosophila) relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001083 name: embryonic subesophageal neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001082 ! embryonic ventral nervous system (Drosophila) [Term] id: FBbt:00001084 name: embryonic labial neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001083 ! embryonic subesophageal neuromere (Drosophila) relationship: part_of FBbt:00000165 ! embryonic labial segment (Drosophila) [Term] id: FBbt:00001085 name: embryonic maxillary neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001083 ! embryonic subesophageal neuromere (Drosophila) relationship: part_of FBbt:00000164 ! embryonic maxillary segment (Drosophila) [Term] id: FBbt:00001086 name: embryonic mandibular neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001083 ! embryonic subesophageal neuromere (Drosophila) relationship: part_of FBbt:00000163 ! embryonic mandibular segment (Drosophila) [Term] id: FBbt:00001087 name: embryonic ventral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001082 ! embryonic ventral nervous system (Drosophila) [Term] id: FBbt:00001088 name: embryonic thoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001087 ! embryonic ventral neuromere (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001089 name: embryonic prothoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001088 ! embryonic thoracic neuromere (Drosophila) relationship: part_of FBbt:00000168 ! embryonic prothoracic segment (Drosophila) [Term] id: FBbt:00001090 name: embryonic mesothoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001088 ! embryonic thoracic neuromere (Drosophila) relationship: part_of FBbt:00000169 ! embryonic mesothoracic segment (Drosophila) [Term] id: FBbt:00001091 name: embryonic metathoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001088 ! embryonic thoracic neuromere (Drosophila) relationship: part_of FBbt:00000170 ! embryonic metathoracic segment (Drosophila) [Term] id: FBbt:00001092 name: embryonic abdominal neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001087 ! embryonic ventral neuromere (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001093 name: embryonic abdominal 1 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000173 ! embryonic abdominal segment 1 (Drosophila) [Term] id: FBbt:00001094 name: embryonic abdominal 2 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000174 ! embryonic abdominal segment 2 (Drosophila) [Term] id: FBbt:00001095 name: embryonic abdominal 3 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000175 ! embryonic abdominal segment 3 (Drosophila) [Term] id: FBbt:00001096 name: embryonic abdominal 4 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000176 ! embryonic abdominal segment 4 (Drosophila) [Term] id: FBbt:00001097 name: embryonic abdominal 5 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000177 ! embryonic abdominal segment 5 (Drosophila) [Term] id: FBbt:00001098 name: embryonic abdominal 6 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000178 ! embryonic abdominal segment 6 (Drosophila) [Term] id: FBbt:00001099 name: embryonic abdominal 7 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000179 ! embryonic abdominal segment 7 (Drosophila) [Term] id: FBbt:00001100 name: embryonic abdominal 8 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000180 ! embryonic abdominal segment 8 (Drosophila) [Term] id: FBbt:00001101 name: embryonic abdominal 9 neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001092 ! embryonic abdominal neuromere (Drosophila) relationship: part_of FBbt:00000181 ! embryonic abdominal segment 9 (Drosophila) [Term] id: FBbt:00001103 name: longitudinal connective (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0160715] subset: cur ! cur is_a: FBbt:00005104 ! connective (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001104 name: ventral nerve cord commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001020 ! commissure relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001105 name: anterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001104 ! ventral nerve cord commissure (Drosophila) [Term] id: FBbt:00001106 name: thoracic anterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001105 ! anterior commissure (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001107 name: thoracic 1 anterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001106 ! thoracic anterior commissure (Drosophila) relationship: part_of FBbt:00000168 ! embryonic prothoracic segment (Drosophila) [Term] id: FBbt:00001108 name: thoracic 2 anterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001106 ! thoracic anterior commissure (Drosophila) relationship: part_of FBbt:00000169 ! embryonic mesothoracic segment (Drosophila) [Term] id: FBbt:00001109 name: thoracic 3 anterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001106 ! thoracic anterior commissure (Drosophila) relationship: part_of FBbt:00000170 ! embryonic metathoracic segment (Drosophila) [Term] id: FBbt:00001110 name: abdominal anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most of the two midline-crossing commissures that develop in the posterior half of each abdominal neuromere, except for a9 which only has one commissure. The anterior commissure contains more fibers than the posterior commissure." [FlyBase:FBrf0053395, FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur synonym: "ac" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001105 ! anterior commissure (Drosophila) relationship: part_of FBbt:00004097 ! abdominal neuromere (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001111 name: abdominal 1 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the first abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001112 name: abdominal 2 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the second abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001113 name: abdominal 3 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the third abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001114 name: abdominal 4 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the fourth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001115 name: abdominal 5 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the fifth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001116 name: abdominal 6 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the sixth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001117 name: abdominal 7 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the seventh abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001118 name: abdominal 8 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Anterior commissure of the eighth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001119 name: abdominal 9 anterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "The only ventral midline-crossing commissure in A9 of the larval ventral nerve cord." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001110 ! abdominal anterior commissure (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001120 name: posterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001104 ! ventral nerve cord commissure (Drosophila) [Term] id: FBbt:00001121 name: thoracic posterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001120 ! posterior commissure (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001122 name: thoracic 1 posterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001120 ! posterior commissure (Drosophila) relationship: part_of FBbt:00000168 ! embryonic prothoracic segment (Drosophila) [Term] id: FBbt:00001123 name: thoracic 2 posterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001120 ! posterior commissure (Drosophila) relationship: part_of FBbt:00000169 ! embryonic mesothoracic segment (Drosophila) [Term] id: FBbt:00001124 name: thoracic 3 posterior commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001120 ! posterior commissure (Drosophila) relationship: part_of FBbt:00000170 ! embryonic metathoracic segment (Drosophila) [Term] id: FBbt:00001125 name: abdominal posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most of the two midline-crossing commissures that develop in the posterior half of each abdominal neuromere, except for a9 which only has one commissure. The posterior commissure contains fewer fibers than the anterior commissure and is located approximately at the level of the posterior neuromere boundary." [FlyBase:FBrf0053395, FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001120 ! posterior commissure (Drosophila) relationship: part_of FBbt:00004097 ! abdominal neuromere (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001126 name: abdominal 1 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the first abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001127 name: abdominal 2 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the second abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001128 name: abdominal 3 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the third abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001129 name: abdominal 4 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the fourth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001130 name: abdominal 5 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the fifth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001131 name: abdominal 6 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the sixth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001132 name: abdominal 7 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the seventh abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001133 name: abdominal 8 posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Posterior commissure of the eighth abdominal neuromere." [FlyBase:FBrf0064795, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001125 ! abdominal posterior commissure (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001134 name: presumptive embryonic/larval peripheral nervous system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval peripheral nervous system." [FBC:DOS] subset: cur ! cur synonym: "embryonic peripheral nervous system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001135 name: proneural cluster (Drosophila) namespace: fly_anatomy.ontology def: "An equivalence group of the neurectoderm where all cells can, although only one will, become a neural progenitor cell." [FlyBase:FBrf0074477, FlyBase:FBrf0089570] subset: cur ! cur is_a: UBERON:0007688 ! anlage [Term] id: FBbt:00001136 name: sensory organ mother cell namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "SMC" RELATED [] [Term] id: FBbt:00001137 name: sensory mother cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "SOP" RELATED [] synonym: "sensillum precursor" RELATED [] synonym: "sensory organ mother cell" RELATED [] synonym: "sensory organ precursor cell" RELATED [] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) relationship: part_of FBbt:00001135 ! proneural cluster (Drosophila) [Term] id: FBbt:00001138 name: C1 chordotonal organ precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "A sensory mother cell which delaminates during stage 10 and which is a precursor of lch5." [FlyBase:FBrf0092876] subset: cur ! cur synonym: "P cell" RELATED [] synonym: "lch5 precursor" RELATED [] is_a: FBbt:00005216 ! chordotonal organ precursor cell (Drosophila) [Term] id: FBbt:00001139 name: peripheral nervous system precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0047289] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00005552 ! ventral sensory complex primordium (Drosophila) relationship: develops_from FBbt:00005553 ! dorsal sensory complex primordium (Drosophila) relationship: part_of FBbt:00001134 ! presumptive embryonic/larval peripheral nervous system (Drosophila) [Term] id: FBbt:00001140 name: dorsal thoracic cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001139 ! peripheral nervous system precursor cluster (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001141 name: dorsal thoracic da (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001140 ! dorsal thoracic cluster (Drosophila) [Term] id: FBbt:00001142 name: dorsal thoracic da1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001141 ! dorsal thoracic da (Drosophila) [Term] id: FBbt:00001143 name: dorsal thoracic da2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001141 ! dorsal thoracic da (Drosophila) [Term] id: FBbt:00001144 name: dorsal thoracic da3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001141 ! dorsal thoracic da (Drosophila) [Term] id: FBbt:00001145 name: dorsal thoracic da4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001141 ! dorsal thoracic da (Drosophila) [Term] id: FBbt:00001146 name: dorsal thoracic da5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001141 ! dorsal thoracic da (Drosophila) [Term] id: FBbt:00001147 name: dorsal thoracic es (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001140 ! dorsal thoracic cluster (Drosophila) [Term] id: FBbt:00001148 name: dorsal thoracic es1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001147 ! dorsal thoracic es (Drosophila) [Term] id: FBbt:00001149 name: dorsal thoracic es2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001147 ! dorsal thoracic es (Drosophila) [Term] id: FBbt:00001150 name: dorsal thoracic es3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001147 ! dorsal thoracic es (Drosophila) [Term] id: FBbt:00001151 name: dorsal thoracic es4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001147 ! dorsal thoracic es (Drosophila) [Term] id: FBbt:00001152 name: dorsal thoracic es5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001147 ! dorsal thoracic es (Drosophila) [Term] id: FBbt:00001153 name: dorsal thoracic bd1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001140 ! dorsal thoracic cluster (Drosophila) [Term] id: FBbt:00001154 name: dorsal thoracic ch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001140 ! dorsal thoracic cluster (Drosophila) [Term] id: FBbt:00001155 name: dorsal thoracic ch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001154 ! dorsal thoracic ch (Drosophila) [Term] id: FBbt:00001156 name: dorsal thoracic ch2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001154 ! dorsal thoracic ch (Drosophila) [Term] id: FBbt:00001157 name: dorsal thoracic ch3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001154 ! dorsal thoracic ch (Drosophila) [Term] id: FBbt:00001158 name: lateral thoracic cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001139 ! peripheral nervous system precursor cluster (Drosophila) [Term] id: FBbt:00001159 name: lateral thoracic da (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001158 ! lateral thoracic cluster (Drosophila) [Term] id: FBbt:00001160 name: lateral thoracic da1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001159 ! lateral thoracic da (Drosophila) [Term] id: FBbt:00001161 name: lateral thoracic da2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001159 ! lateral thoracic da (Drosophila) [Term] id: FBbt:00001162 name: lateral thoracic da3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001159 ! lateral thoracic da (Drosophila) [Term] id: FBbt:00001163 name: lateral thoracic da4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001159 ! lateral thoracic da (Drosophila) [Term] id: FBbt:00001164 name: lateral thoracic es (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001139 ! peripheral nervous system precursor cluster (Drosophila) [Term] id: FBbt:00001165 name: lateral thoracic es1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001164 ! lateral thoracic es (Drosophila) [Term] id: FBbt:00001166 name: lateral thoracic es2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001164 ! lateral thoracic es (Drosophila) [Term] id: FBbt:00001167 name: lateral thoracic es3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001164 ! lateral thoracic es (Drosophila) [Term] id: FBbt:00001168 name: lateral thoracic es4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001164 ! lateral thoracic es (Drosophila) [Term] id: FBbt:00001169 name: lateral thoracic es5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001164 ! lateral thoracic es (Drosophila) [Term] id: FBbt:00001170 name: lateral thoracic es6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001164 ! lateral thoracic es (Drosophila) [Term] id: FBbt:00001171 name: lateral thoracic td1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001164 ! lateral thoracic es (Drosophila) [Term] id: FBbt:00001172 name: ventral thoracic cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001139 ! peripheral nervous system precursor cluster (Drosophila) [Term] id: FBbt:00001173 name: ventral thoracic da (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001172 ! ventral thoracic cluster (Drosophila) [Term] id: FBbt:00001174 name: ventral thoracic da1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001173 ! ventral thoracic da (Drosophila) [Term] id: FBbt:00001175 name: ventral thoracic da2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001173 ! ventral thoracic da (Drosophila) [Term] id: FBbt:00001176 name: ventral thoracic da3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001173 ! ventral thoracic da (Drosophila) [Term] id: FBbt:00001177 name: ventral thoracic da4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001173 ! ventral thoracic da (Drosophila) [Term] id: FBbt:00001178 name: ventral thoracic es (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001172 ! ventral thoracic cluster (Drosophila) [Term] id: FBbt:00001179 name: ventral thoracic es1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001180 name: ventral thoracic es2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001181 name: ventral thoracic es3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001182 name: ventral thoracic es4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001183 name: ventral thoracic es5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001184 name: ventral thoracic es6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001185 name: ventral thoracic es7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001186 name: ventral thoracic es8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001187 name: ventral thoracic es9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001188 name: ventral thoracic es10 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001178 ! ventral thoracic es (Drosophila) [Term] id: FBbt:00001189 name: ventral thoracic ch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001172 ! ventral thoracic cluster (Drosophila) [Term] id: FBbt:00001190 name: dorsal abdominal cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001139 ! peripheral nervous system precursor cluster (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001191 name: dorsal abdominal da (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001190 ! dorsal abdominal cluster (Drosophila) [Term] id: FBbt:00001192 name: dorsal abdominal da1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001191 ! dorsal abdominal da (Drosophila) [Term] id: FBbt:00001193 name: dorsal abdominal da2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001191 ! dorsal abdominal da (Drosophila) [Term] id: FBbt:00001194 name: dorsal abdominal da3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001191 ! dorsal abdominal da (Drosophila) [Term] id: FBbt:00001195 name: dorsal abdominal da4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001191 ! dorsal abdominal da (Drosophila) [Term] id: FBbt:00001196 name: dorsal abdominal da5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001191 ! dorsal abdominal da (Drosophila) [Term] id: FBbt:00001197 name: dorsal abdominal es (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001190 ! dorsal abdominal cluster (Drosophila) [Term] id: FBbt:00001198 name: dorsal abdominal es1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001197 ! dorsal abdominal es (Drosophila) [Term] id: FBbt:00001199 name: dorsal abdominal es2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001197 ! dorsal abdominal es (Drosophila) [Term] id: FBbt:00001200 name: dorsal abdominal es3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001197 ! dorsal abdominal es (Drosophila) [Term] id: FBbt:00001201 name: dorsal abdominal es4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001197 ! dorsal abdominal es (Drosophila) [Term] id: FBbt:00001202 name: dorsal abdominal es5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001197 ! dorsal abdominal es (Drosophila) [Term] id: FBbt:00001203 name: dorsal abdominal ch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001197 ! dorsal abdominal es (Drosophila) [Term] id: FBbt:00001204 name: lateral abdominal cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001139 ! peripheral nervous system precursor cluster (Drosophila) [Term] id: FBbt:00001205 name: lateral abdominal da (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001204 ! lateral abdominal cluster (Drosophila) [Term] id: FBbt:00001206 name: lateral abdominal da1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001205 ! lateral abdominal da (Drosophila) [Term] id: FBbt:00001207 name: lateral abdominal da2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001205 ! lateral abdominal da (Drosophila) [Term] id: FBbt:00001208 name: lateral abdominal es (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001204 ! lateral abdominal cluster (Drosophila) [Term] id: FBbt:00001209 name: lateral abdominal es1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001208 ! lateral abdominal es (Drosophila) [Term] id: FBbt:00001210 name: lateral abdominal es2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001208 ! lateral abdominal es (Drosophila) [Term] id: FBbt:00001211 name: lateral abdominal es3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001208 ! lateral abdominal es (Drosophila) [Term] id: FBbt:00001212 name: lateral abdominal bd1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001204 ! lateral abdominal cluster (Drosophila) [Term] id: FBbt:00001213 name: lateral abdominal ch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001204 ! lateral abdominal cluster (Drosophila) [Term] id: FBbt:00001214 name: lateral abdominal ch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001213 ! lateral abdominal ch (Drosophila) [Term] id: FBbt:00001215 name: lateral abdominal ch2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001213 ! lateral abdominal ch (Drosophila) [Term] id: FBbt:00001216 name: lateral abdominal ch3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001213 ! lateral abdominal ch (Drosophila) [Term] id: FBbt:00001217 name: lateral abdominal ch4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001213 ! lateral abdominal ch (Drosophila) [Term] id: FBbt:00001218 name: lateral abdominal ch5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001213 ! lateral abdominal ch (Drosophila) [Term] id: FBbt:00001219 name: lateral abdominal td1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001204 ! lateral abdominal cluster (Drosophila) [Term] id: FBbt:00001220 name: ventral abdominal cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001139 ! peripheral nervous system precursor cluster (Drosophila) [Term] id: FBbt:00001221 name: ventral abdominal da (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001220 ! ventral abdominal cluster (Drosophila) [Term] id: FBbt:00001222 name: ventral abdominal da1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001221 ! ventral abdominal da (Drosophila) [Term] id: FBbt:00001223 name: ventral abdominal da2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001221 ! ventral abdominal da (Drosophila) [Term] id: FBbt:00001224 name: ventral abdominal da3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001221 ! ventral abdominal da (Drosophila) [Term] id: FBbt:00001225 name: ventral abdominal da4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001221 ! ventral abdominal da (Drosophila) [Term] id: FBbt:00001226 name: ventral abdominal da5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001221 ! ventral abdominal da (Drosophila) [Term] id: FBbt:00001227 name: ventral abdominal da6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001221 ! ventral abdominal da (Drosophila) [Term] id: FBbt:00001228 name: ventral abdominal da7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001221 ! ventral abdominal da (Drosophila) [Term] id: FBbt:00001229 name: ventral abdominal es (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001220 ! ventral abdominal cluster (Drosophila) [Term] id: FBbt:00001230 name: ventral abdominal es1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001229 ! ventral abdominal es (Drosophila) [Term] id: FBbt:00001231 name: ventral abdominal es2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001229 ! ventral abdominal es (Drosophila) [Term] id: FBbt:00001232 name: ventral abdominal es3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001229 ! ventral abdominal es (Drosophila) [Term] id: FBbt:00001233 name: ventral abdominal es4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001229 ! ventral abdominal es (Drosophila) [Term] id: FBbt:00001234 name: ventral abdominal es5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001229 ! ventral abdominal es (Drosophila) [Term] id: FBbt:00001235 name: ventral abdominal es6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001229 ! ventral abdominal es (Drosophila) [Term] id: FBbt:00001236 name: ventral abdominal bd1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001220 ! ventral abdominal cluster (Drosophila) [Term] id: FBbt:00001237 name: ventral abdominal ch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001220 ! ventral abdominal cluster (Drosophila) [Term] id: FBbt:00001238 name: ventral abdominal ch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001237 ! ventral abdominal ch (Drosophila) [Term] id: FBbt:00001239 name: ventral abdominal ch2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001237 ! ventral abdominal ch (Drosophila) [Term] id: FBbt:00001240 name: ventral abdominal ch3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001237 ! ventral abdominal ch (Drosophila) [Term] id: FBbt:00001241 name: ventral abdominal td (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001220 ! ventral abdominal cluster (Drosophila) [Term] id: FBbt:00001242 name: ventral abdominal td1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001241 ! ventral abdominal td (Drosophila) [Term] id: FBbt:00001243 name: ventral abdominal td2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001241 ! ventral abdominal td (Drosophila) [Term] id: FBbt:00001244 name: embryonic glioblast (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0105240] subset: cur ! cur is_a: CL:0000030 ! glioblast is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001245 name: dorsal procephalic subperineural glia cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DPSG" RELATED [] is_a: FBbt:00001244 ! embryonic glioblast (Drosophila) relationship: part_of FBbt:00001066 ! embryonic protocerebrum (Drosophila) [Term] id: FBbt:00001246 name: ventral procephalic subperineural glia cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "VPSG" RELATED [] is_a: FBbt:00001244 ! embryonic glioblast (Drosophila) relationship: part_of FBbt:00001066 ! embryonic protocerebrum (Drosophila) [Term] id: FBbt:00001247 name: basal procephalic longitudinal glia cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "BPLG" RELATED [] is_a: FBbt:00001244 ! embryonic glioblast (Drosophila) relationship: part_of FBbt:00001066 ! embryonic protocerebrum (Drosophila) [Term] id: FBbt:00001248 name: anterior deuterocerebral subperineurial glia cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ADSG" RELATED [] synonym: "anterior deutocerebral subperineurial glia cluster" EXACT [] is_a: FBbt:00001244 ! embryonic glioblast (Drosophila) relationship: part_of FBbt:00001067 ! embryonic deuterocerebrum (Drosophila) [Term] id: FBbt:00001249 name: basal deuterocerebral subperineurial glia cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "BDSG" RELATED [] synonym: "basal deutocerebral subperineurial glia cluster" EXACT [] is_a: FBbt:00001244 ! embryonic glioblast (Drosophila) relationship: part_of FBbt:00001067 ! embryonic deuterocerebrum (Drosophila) [Term] id: FBbt:00001250 name: posterior deuterocerebral subperineural glia cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "PDSG" RELATED [] is_a: FBbt:00001244 ! embryonic glioblast (Drosophila) relationship: part_of FBbt:00001067 ! embryonic deuterocerebrum (Drosophila) [Term] id: FBbt:00001251 name: embryonic/larval glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the embryo/larva." [FlyBase:FBrf0050373, FlyBase:FBrf0053160, FlyBase:FBrf0054242, FlyBase:FBrf0090460, FlyBase:FBrf0098344, FlyBase:FBrf0105240, FlyBase:FBrf0205499, PMID:21438012] subset: cur ! cur synonym: "embryonic glial cell" RELATED [] synonym: "larval glial cell" RELATED [] is_a: CL:0000124 ! glial cell (sensu Nematoda and Protostomia) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001252 name: surface associated glial cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001257 def: "A glial cell that is part of or associated with the surface of the central nervous system." [FBC:DOS] subset: cur ! cur is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00001253 name: exit glial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001252 ! surface associated glial cell (Drosophila) [Term] id: FBbt:00001255 name: channel glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface associated glial cell that lies along the dorsoventral channels of the ventral nerve cord. The nuclei of these glial cells are smaller and more spherical compared to the flattened nuclei of the subperineurial glia." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "CNS channel glial cell" RELATED [] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001252 ! surface associated glial cell (Drosophila) relationship: develops_from FBbt:00001381 ! neuroblast NB7-4 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001256 name: CNS glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Any glial cell (FBbt:00005144) that is part of some central nervous system (FBbt:00005094)." [FBC:auto_generated_definition, FlyBase:FBrf0206543] subset: cur ! cur synonym: "CNS glial cell" RELATED [] is_a: CL:0000124 ! glial cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00001258 name: subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001254 alt_id: FBbt:00005154 def: "Any glial cell (FBbt:00005144) that is part of some subperineurial glial sheath (FBbt:00007091)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "SPG" RELATED [] synonym: "barrier glial cell" RELATED [FlyBase:FBrf0058936] synonym: "inner perineural sheath cell" EXACT [] synonym: "inner perineurial sheath cell" EXACT [] synonym: "subperineurial associated glial cell" EXACT [] synonym: "surface glia" RELATED [] is_a: FBbt:00005152 ! glial cell of the perineurium (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier [Term] id: FBbt:00001259 name: A-subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "A large subperineural glial cell that lies anterior to the anterior segment border and anterior commissure and medial to the longitudinal connective in each abdominal and thoracic neuromere, (Klambt and Goodman, 1991; Ito et al., 1995). It sends a process to the dorsoventral channel (Ito et al., 1995)." [FlyBase:FBrf0054242, FlyBase:FBrf0057603, FlyBase:FBrf0082171] subset: cur ! cur synonym: "A SPG" EXACT [FlyBase:FBrf0054242] synonym: "A subperineurial glial cell" EXACT [] synonym: "A-SPG" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001260 name: A-subperineurial glial cell (supraesophageal) (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "A subperineurial glial cell (supraesophageal)" EXACT [] is_a: FBbt:00001258 ! subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier [Term] id: FBbt:00001261 name: A-subperineurial glial cell of optic lobe (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "A subperineurial glial cell of optic lobe" EXACT [] is_a: FBbt:00001260 ! A-subperineurial glial cell (supraesophageal) (Drosophila) [Term] id: FBbt:00001262 name: A-subperineurial glial cell (subesophageal) (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "A subperineurial glial cell (subesophageal)" EXACT [] is_a: FBbt:00007605 ! CNS subperineurial glial cell (Drosophila) relationship: part_of FBbt:00004013 ! subesophageal ganglion (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier [Term] id: FBbt:00001263 name: A-subperineurial glial cell of thorax (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in a thoracic segment." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A glial cell of thorax" RELATED [] synonym: "A subperineurial glial cell of thorax" EXACT [] synonym: "A-SPG" RELATED [] is_a: FBbt:00001259 ! A-subperineurial glial cell (Drosophila) relationship: develops_from FBbt:00001386 ! neuroblast NB2-2 of thorax (Drosophila) relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) [Term] id: FBbt:00001264 name: A-subperineurial glial cell of thoracic segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in thoracic segment 1." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of thoracic segment 1" EXACT [] is_a: FBbt:00001263 ! A-subperineurial glial cell of thorax (Drosophila) relationship: part_of FBbt:00000168 ! embryonic prothoracic segment (Drosophila) [Term] id: FBbt:00001265 name: A-subperineurial glial cell of thoracic segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in thoracic segment 2." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of thoracic segment 2" EXACT [] is_a: FBbt:00001263 ! A-subperineurial glial cell of thorax (Drosophila) relationship: part_of FBbt:00000169 ! embryonic mesothoracic segment (Drosophila) [Term] id: FBbt:00001266 name: A-subperineurial glial cell of thoracic segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in thoracic segment 3." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of thoracic segment 3" EXACT [] is_a: FBbt:00001263 ! A-subperineurial glial cell of thorax (Drosophila) relationship: part_of FBbt:00000170 ! embryonic metathoracic segment (Drosophila) [Term] id: FBbt:00001267 name: A-subperineurial glial cell of abdomen (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in the abdominal hemineuromeres. It lies at 20-30% along the medio-lateral axis." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A glial cell of abdomen" RELATED [] synonym: "A subperineurial glial cell of abdomen" EXACT [] synonym: "A-SPG" RELATED [] is_a: FBbt:00001259 ! A-subperineurial glial cell (Drosophila) relationship: develops_from FBbt:00001373 ! neuroblast NB1-1 of abdomen (Drosophila) relationship: part_of FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001268 name: A-subperineurial glial cell of abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 1." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 1" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000173 ! embryonic abdominal segment 1 (Drosophila) [Term] id: FBbt:00001269 name: A-subperineurial glial cell of abdominal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 2." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 2" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000174 ! embryonic abdominal segment 2 (Drosophila) [Term] id: FBbt:00001270 name: A-subperineurial glial cell of abdominal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 3." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 3" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000175 ! embryonic abdominal segment 3 (Drosophila) [Term] id: FBbt:00001271 name: A-subperineurial glial cell of abdominal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 4." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 4" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000176 ! embryonic abdominal segment 4 (Drosophila) [Term] id: FBbt:00001272 name: A-subperineurial glial cell of abdominal segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 5." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 5" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000177 ! embryonic abdominal segment 5 (Drosophila) [Term] id: FBbt:00001273 name: A-subperineurial glial cell of abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 6." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 6" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000178 ! embryonic abdominal segment 6 (Drosophila) [Term] id: FBbt:00001274 name: A-subperineurial glial cell of abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 7." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 7" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000179 ! embryonic abdominal segment 7 (Drosophila) [Term] id: FBbt:00001275 name: A-subperineurial glial cell of abdominal segment 8 (Drosophila) namespace: fly_anatomy.ontology def: "A-subperineurial glial cell located in abdominal segment 8." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "A subperineurial glial cell of abdominal segment 8" EXACT [] is_a: FBbt:00001267 ! A-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000180 ! embryonic abdominal segment 8 (Drosophila) [Term] id: FBbt:00001276 name: B-subperineurial glial cell of abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Large subperineural glial cell that sits over the posterior commissure just medial to the longitudinal connectives (Klambt and Goodman, 1991; Ito et al., 1995). It sends processes in three directions: medially to the midline, anteriorly and posteriorly (Ito et al., 1995). Unlike the A-subperineural glial cell, the B-subperineural glial cell is only found in abdominal segments of the embryo and larvae, and lies at approximately the centre of the segment along the antero-posterior axis (Ito et al., 1995)." [FlyBase:FBrf0054242, FlyBase:FBrf0057603, PMID:21438012] subset: cur ! cur synonym: "B glial cell of abdomen" RELATED [] synonym: "B subperineurial glial cell of abdomen" EXACT [] synonym: "B-SPG" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: develops_from FBbt:00001373 ! neuroblast NB1-1 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001277 name: B-subperineurial glial cell of abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 1." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 1" EXACT [] synonym: "B-subperineurial glial cell 1" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000173 ! embryonic abdominal segment 1 (Drosophila) [Term] id: FBbt:00001278 name: B-subperineurial glial cell of abdominal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 2." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 2" EXACT [] synonym: "B-subperineurial glial cell 2" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000174 ! embryonic abdominal segment 2 (Drosophila) [Term] id: FBbt:00001279 name: B-subperineurial glial cell of abdominal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 3." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 3" EXACT [] synonym: "B-subperineurial glial cell 3" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000175 ! embryonic abdominal segment 3 (Drosophila) [Term] id: FBbt:00001280 name: B-subperineurial glial cell of abdominal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 4." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 4" EXACT [] synonym: "B-subperineurial glial cell 4" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000176 ! embryonic abdominal segment 4 (Drosophila) [Term] id: FBbt:00001281 name: B-subperineurial glial cell of abdominal segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 5." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 5" EXACT [] synonym: "B-subperineurial glial cell 5" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000177 ! embryonic abdominal segment 5 (Drosophila) [Term] id: FBbt:00001282 name: B-subperineurial glial cell of abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 6." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 6" EXACT [] synonym: "B-subperineurial glial cell 6" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000178 ! embryonic abdominal segment 6 (Drosophila) [Term] id: FBbt:00001283 name: B-subperineurial glial cell of abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 7." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 7" EXACT [] synonym: "B-subperineurial glial cell 7" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000179 ! embryonic abdominal segment 7 (Drosophila) [Term] id: FBbt:00001284 name: B-subperineurial glial cell of abdominal segment 8 (Drosophila) namespace: fly_anatomy.ontology def: "B-subperineurial glial cell located in abdominal segment 8." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "B subperineurial glial cell 8" EXACT [] synonym: "B-subperineurial glial cell 8" EXACT [] is_a: FBbt:00001276 ! B-subperineurial glial cell of abdomen (Drosophila) relationship: part_of FBbt:00000180 ! embryonic abdominal segment 8 (Drosophila) [Term] id: FBbt:00001285 name: medial dorsal subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, subperineurial glial cell located on the ventral surface of the embryonic/larval ventral nerve cord. It lies between the intersegmental nerve roots, at 30-60% along the medio-lateral axis, slightly antero-lateral to the medial intersegmental nerve root glial cell." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "MD-SPG" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001286 name: lateral dorsal subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, subperineurial glial cell located on the ventral surface of the embryonic/larval ventral nerve cord. It lies near, but slightly above, the exit point of the peripheral nerve, at 80-90% along the medio-lateral axis." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "LD-SPG" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001287 name: dorsal lateral subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DL-SPG" RELATED [] synonym: "belt glial cell" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001288 name: ventral lateral subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, subperineurial glial cell located on the lateral surface of the embryonic/larval ventral nerve cord, and is located ventral to the dorsal lateral subperineurial glial cell. It lies at about 30% along the ventro-dorsal axis, and occasionally there are two of these cells per neuromere." [FlyBase:FBrf0082171] comment: At stage 14 the lateral subperineurial glial cells have a vertically elongated 'belt-like' morphology. This suggests that these cells may be the 'belt glia' described by Doe et al., 1991. subset: cur ! cur synonym: "VL-SPG" RELATED [] synonym: "belt glial cell" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001289 name: lateral ventral subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, subperineurial glial cell located on the ventral surface of the embryonic/larval ventral nerve cord, and lies antero-lateral to the medial ventral subperineurial glial cell. In the abdominal segments, it lies 0-10% along the antero-posterior axis and 60-90% along the medio-lateral axis." [FlyBase:FBrf0082171] subset: cur ! cur synonym: "LV-SPG" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: develops_from FBbt:00001373 ! neuroblast NB1-1 of abdomen (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001290 name: medial ventral subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, subperineurial glial cell located on the ventral surface of the embryonic/larval ventral nerve cord, and lies more medially than the lateral ventral subperineurial glial cell. In the abdominal segments, it lies 50% along the antero-posterior axis and 30-50% along the medio-lateral axis, but it lies slightly more medially in the thoracic segments." [PMID:21438012] subset: cur ! cur synonym: "MV-SPG" RELATED [] is_a: FBbt:00007598 ! embryonic/larval CNS subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001291 name: CNS channel glial cell namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00001255 ! channel glial cell (Drosophila) comment: Made obsolete due to redundancy. Alternatively please use: FBbt:00001255 \! channel glial cell subset: cur ! cur synonym: "CG" RELATED [] synonym: "MS cell" RELATED [] [Term] id: FBbt:00001292 name: dorsal channel glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, channel glial cell that lies at the dorsal-end of the channel above the neuropil. There are two of these cells per hemisegment and their processes form, along with processes from the ventral channel glia, a sheath structure that covers the inner surface of the dorsoventral channel." [PMID:21438012] subset: cur ! cur synonym: "D-CG" RELATED [] is_a: FBbt:00001255 ! channel glial cell (Drosophila) [Term] id: FBbt:00001293 name: medial channel glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, channel glial cell that lies just beneath the ventral side of the cortex/neuropil interface. There are 3-4 medial channel glial cells and they send their processes to and along the dorsoventral channel." [PMID:21438012] subset: cur ! cur synonym: "M-CG" RELATED [] is_a: FBbt:00001255 ! channel glial cell (Drosophila) [Term] id: FBbt:00001294 name: medial channel glial cell 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most of the two medial channel glial cells." [PMID:21438012] subset: cur ! cur synonym: "M-CG1" RELATED [] is_a: FBbt:00001293 ! medial channel glial cell (Drosophila) [Term] id: FBbt:00001295 name: medial channel glial cell 2 (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most of the two medial channel glial cells." [PMID:21438012] subset: cur ! cur synonym: "M-CG2" RELATED [] is_a: FBbt:00001293 ! medial channel glial cell (Drosophila) [Term] id: FBbt:00001296 name: ventral channel glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface-associated, channel glial cell that lies at the ventral-end of the channel above the neuropil. There are two of these cells per hemisegment and their processes form, along with processes from the dorsal channel glia, a sheath structure that covers the inner surface of the dorsoventral channel." [PMID:21438012] subset: cur ! cur synonym: "V-CG" RELATED [] is_a: FBbt:00001255 ! channel glial cell (Drosophila) [Term] id: FBbt:00001297 name: cortex associated CNS glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell lying amongst the neuronal cell bodies of the cortex (Ito et al., 1995)." [PMID:21438012] comment: Glial cells associated with axonal tracts (such as those associated with nerve roots) are excluded from this class of glial cells. subset: cur ! cur synonym: "cortex associated CNS glial cell" RELATED [] is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00007114 ! cortex of the central nervous system (Drosophila) [Term] id: FBbt:00001298 name: embryonic/larval cell body glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell located amongst neuronal cell bodies in the cortex of the embryonic/larval central nervous system. In the abdominal and thoracic segments there are typically 3-4 and 4-5 cell body glia per hemineuromere, respectively (Ito et al., 1995), though their positions vary between individuals." [PMID:21438012] subset: cur ! cur synonym: "CBG" RELATED [] synonym: "CoG" RELATED [] synonym: "cell body glial cell" RELATED [] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001297 ! cortex associated CNS glial cell (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001299 name: medial-most cell body glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell body glial cell that lies close to the midline in the center of the segment. It lies between 10-20% along the mediolateral axis, and at approximately 50% along the anterioposterior axis, and flanks the ventral unpaired median (VUM) neuron cluster on the midline. The thoracic hemineuromere has two medial-most cell body glial cells, whilst the abdominal hemineuromere has only one." [PMID:21438012] comment: The medial-most cell body glial cells are likely the VUM-support cells described by Klambt and Goodman (1991), and Menne and Klambt (1994). subset: cur ! cur synonym: "MM-CBG" RELATED [] synonym: "VUM support cell" RELATED [FlyBase:FBrf0054242] synonym: "VUM-support cell" RELATED [FlyBase:FBrf0054242] is_a: FBbt:00001298 ! embryonic/larval cell body glial cell (Drosophila) relationship: develops_from FBbt:00001399 ! neuroblast NB6-4 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001300 name: medial cell body glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell body glial cell located in the ventral cortex, lateral to the medial-most cell body glia. Its position varies between 20% and 80% along the mediolateral axis." [PMID:21438012] subset: cur ! cur synonym: "M-CBG" RELATED [PMID:21438012] synonym: "medial CBG" RELATED [PMID:21438012] is_a: FBbt:00001298 ! embryonic/larval cell body glial cell (Drosophila) relationship: develops_from FBbt:00001399 ! neuroblast NB6-4 (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001301 name: ventral cell body glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Ventrolaterally located cell body glial cell, located in the lateral cortex more medial to the lateral cell body glial cell. This cell is not present in all animals." [PMID:21438012] subset: cur ! cur synonym: "VL-CBG" RELATED [] synonym: "ventrolateral CBG" RELATED [] is_a: FBbt:00001298 ! embryonic/larval cell body glial cell (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001302 name: lateral cell body glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most of the cell body glial cells, located in the lateral cortex." [PMID:21438012] subset: cur ! cur synonym: "L-CBG" RELATED [] synonym: "lateral CBG" RELATED [PMID:21438012] synonym: "longitudinal cell body glial cell" RELATED [] is_a: FBbt:00001298 ! embryonic/larval cell body glial cell (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001303 name: neuropil associated CNS glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell associated with neuropil regions, including regions of synaptic neuropil, tracts, commissures and nerve roots. There are between 90-100 neuropil associated glial cells in a single late larval brain hemisphere (Hartenstein, 2011)." [PMID:21438012] subset: cur ! cur synonym: "neuropil associated CNS glial cell" RELATED [] synonym: "neuropil associated glial cell" EXACT [PMID:21438012] synonym: "neuropil-associated CNS glial cell" EXACT [] synonym: "neuropil-associated glial cell" EXACT [PMID:21438012] synonym: "neuropile associated CNS glial cell" EXACT [] is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00007117 ! neuropil glial sheath (Drosophila) [Term] id: FBbt:00001304 name: intersegmental nerve root glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Nerve root glial cell associated with the intersegmental nerve root." [PMID:21438012] subset: cur ! cur synonym: "ISNG" RELATED [PMID:21438012] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00100495 ! nerve root glial cell (Drosophila) relationship: develops_from FBbt:00001404 ! neuroblast NB1-3 (Drosophila) relationship: part_of FBbt:00007604 ! intersegmental nerve root (Drosophila) [Term] id: FBbt:00001305 name: medial intersegmental nerve root glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental nerve glial cell that is located at the medial end of the anterior branch of the intersegmental nerve root, above the lateral neuropil. It contacts both the perineurium and the cortex/neuropil interface. It sends a process laterally along the nerve root, showing a characteristic triangular morphology." [PMID:21438012] subset: cur ! cur synonym: "ISG1" RELATED [FlyBase:FBrf0054242] synonym: "M-ISNG" RELATED [PMID:21438012] synonym: "SBC" RELATED [FlyBase:FBrf0064795] synonym: "intersegmental glial cell 1" RELATED [] synonym: "segmental boundary glial cell" RELATED [] is_a: FBbt:00001304 ! intersegmental nerve root glial cell (Drosophila) [Term] id: FBbt:00001306 name: lateral intersegmental nerve root glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental nerve root glia that is located near the exit point of the nerve root." [PMID:21438012] comment: The lateral segmental nerve root glial cell and the lateral intersegmental nerve root glial cell lie in close proximity. In some animals one of these is absent. subset: cur ! cur synonym: "ISG2" RELATED [FlyBase:FBrf0054242] synonym: "L-ISNG" RELATED [PMID:21438012] synonym: "intersegmental glial cell 2" RELATED [FlyBase:FBrf0054242] is_a: FBbt:00001304 ! intersegmental nerve root glial cell (Drosophila) [Term] id: FBbt:00001307 name: segmental nerve root glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell associated with the segmental nerve root." [PMID:21438012] subset: cur ! cur synonym: "SNG" RELATED [PMID:21438012] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00100495 ! nerve root glial cell (Drosophila) relationship: part_of FBbt:00007599 ! segmental nerve root (Drosophila) [Term] id: FBbt:00001308 name: medial segmental nerve root glial cell 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most of the two medial segment nerve root glial cells." [PMID:21438012] subset: cur ! cur synonym: "M-SNG1" RELATED [PMID:21438012] synonym: "SG1" RELATED [] synonym: "SNG1" RELATED [FlyBase:FBrf0054242] synonym: "segmental glial cell 1" RELATED [] is_a: FBbt:00100496 ! medial segmental nerve root glial cell (Drosophila) [Term] id: FBbt:00001309 name: medial segmental nerve root glial cell 2 (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most of the two medial segment nerve root glial cells." [PMID:21438012] subset: cur ! cur synonym: "M-SNG2" RELATED [PMID:21438012] synonym: "SG2" RELATED [] synonym: "SNG2" RELATED [FlyBase:FBrf0054242] synonym: "segmental glial cell 2" RELATED [] is_a: FBbt:00100496 ! medial segmental nerve root glial cell (Drosophila) [Term] id: FBbt:00001310 name: lateral segmental nerve root glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Segmental nerve root glial cell that lies at the point where the intersegmental and segmental nerve roots meet to form a single peripheral nerve." [PMID:21438012] comment: The lateral segmental nerve root glial cell and the lateral intersegmental nerve root glial cell lie in close proximity. In some animals one of these is absent. subset: cur ! cur synonym: "L-SNG" RELATED [PMID:21438012] synonym: "SG3" RELATED [FlyBase:FBrf0054242] synonym: "segmental glial cell" RELATED [] is_a: FBbt:00001307 ! segmental nerve root glial cell (Drosophila) [Term] id: FBbt:00001311 name: interface glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Neuropil associated CNS glial cell that lies at the cortex/neuropil interface and sends processes along it. There are 7-8 interface glial cells per hemineuromere in the embryo and early larvae." [PMID:21438012] subset: cur ! cur synonym: "IG" RELATED [] synonym: "LG" RELATED [] synonym: "longitudinal glial cell" RELATED [] synonym: "neuropile cover glia" RELATED [doi:10.1007/BF00323575] is_a: FBbt:00001303 ! neuropil associated CNS glial cell (Drosophila) relationship: develops_from FBbt:00001405 ! neuroblast GP (Drosophila) [Term] id: FBbt:00001312 name: dorsal interface glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Interface glial cell located on the dorsal interface of the hemineuromere. There are up to five of these cells per hemineuromere, three or four lying in the medial-most area of the dorsal interface which separate the neuropil from the pair of rows of large neural cell bodies. Another one or two dorsal interface glia lie at a more lateral region of the dorsal interface, which is beneath the thinnest part of the dorsal cortex." [PMID:21438012] comment: The positions of the interface glial cells vary considerably in the first instar larval ventral nerve cord. subset: cur ! cur synonym: "D-IG" RELATED [] synonym: "dorsal IG" RELATED [PMID:21438012] is_a: FBbt:00001311 ! interface glial cell (Drosophila) [Term] id: FBbt:00001313 name: lateral interface glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Interface glial cell located in the lateral interface of the ventral nerve cord. There are 2 lateral interface glial cells per hemineuromere forming two parallel flat processes dorso-ventrally along the lateral interface." [PMID:21438012] subset: cur ! cur synonym: "L-IG" RELATED [] synonym: "lateral IG" RELATED [PMID:21438012] is_a: FBbt:00001311 ! interface glial cell (Drosophila) [Term] id: FBbt:00001314 name: ventral interface glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Interface glial cell located at the ventral-most region of the ventral nerve cord interface near the center of the segment lateral to the ventral midline glial cells. The ventral interface glial cell sends processes both laterally and medially. The medial process runs towards the midline glial cells, but apparently does not contact them. It runs along the inner surface of the neuropil between the anterior and posterior commissures and seems to contact the medial dorsal intersegmental glial cells." [PMID:21438012] comment: In some samples there are two ventral interface glial cells per hemisegment, but generally there is only one cell. subset: cur ! cur synonym: "V-IG" RELATED [] synonym: "ventral IG" RELATED [PMID:21438012] is_a: FBbt:00001311 ! interface glial cell (Drosophila) [Term] id: FBbt:00001315 name: midline glial cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005567 def: "Neuropil associated CNS glial cell located along the midline in the ventral nerve cord. There are three or four midline glia per neuromere, arranged above (dorsal to) and below (ventral to) the neuropil. Cytoplasmic extensions are restricted to the midline, covering the medial part of the commissure neuropil. Fine extensions are also observed within the neuropil." [PMID:21438012] comment: Ito et al. (1995) states that there are generally three or four midline glial cells per neuromere, but occasionally there are more than four. The thoracic neuromeres are more likely than the abdominal neuromeres to have more. Midline glia are repo (FBgn0011701) negative and are eliminated by apoptosis during the pupal stage. subset: cur ! cur synonym: "MG" RELATED [] synonym: "MGA, MGM, MGP" RELATED [] synonym: "median glial cell" RELATED [] synonym: "midline glia" EXACT [] synonym: "ventral midline glia" EXACT [] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001303 ! neuropil associated CNS glial cell (Drosophila) relationship: develops_from FBbt:00016014 ! ventral midline glia primordium (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001316 name: midline dorsal glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Midline glial cell located dorsal to the ventral nerve cord neuropil." [PMID:21438012] subset: cur ! cur synonym: "D-MG" RELATED [] synonym: "dorsal midline glial cell" EXACT [] is_a: FBbt:00001315 ! midline glial cell (Drosophila) [Term] id: FBbt:00001317 name: midline ventral glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Midline glial cell located ventral to the ventral nerve cord neuropil." [PMID:21438012] subset: cur ! cur synonym: "V-MG" RELATED [] synonym: "ventral midline glial cell" EXACT [] is_a: FBbt:00001315 ! midline glial cell (Drosophila) [Term] id: FBbt:00001318 name: support cell of the dorsal bipolar dendritic cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "SDBP" RELATED [] is_a: FBbt:00001256 ! CNS glial cell (Drosophila) [Term] id: FBbt:00001319 name: stomatogastric glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Any glial cell (FBbt:00005144) that is part of some embryonic stomatogastric nervous system (FBbt:00001069)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00001069 ! embryonic stomatogastric nervous system (Drosophila) [Term] id: FBbt:00001320 name: PNS glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell that is part of the peripheral nervous system." [FBC:SPR] subset: cur ! cur synonym: "PNS glial cell" RELATED [] is_a: CL:0000124 ! glial cell (sensu Nematoda and Protostomia) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00001321 name: PNS exit glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Any exit glial cell (FBbt:00001253) that is part of some embryonic/larval peripheral nervous system (FBbt:00005893)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "EG" RELATED [] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001253 ! exit glial cell (Drosophila) is_a: FBbt:00001320 ! PNS glial cell (Drosophila) relationship: part_of FBbt:00005893 ! embryonic/larval peripheral nervous system (Drosophila) [Term] id: FBbt:00001322 name: medial exit glial cell 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "EGM1" RELATED [] is_a: FBbt:00001321 ! PNS exit glial cell (Drosophila) [Term] id: FBbt:00001323 name: medial exit glial cell 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "EGM2" RELATED [] is_a: FBbt:00001321 ! PNS exit glial cell (Drosophila) [Term] id: FBbt:00001324 name: anterior exit glial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "EGA" RELATED [] is_a: FBbt:00001321 ! PNS exit glial cell (Drosophila) [Term] id: FBbt:00001325 name: posterior exit glial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "EGP" RELATED [] is_a: FBbt:00001321 ! PNS exit glial cell (Drosophila) [Term] id: FBbt:00001326 name: transverse nerve exit glial cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:ma] comment: Said to be mesodermal in origin. subset: cur ! cur is_a: FBbt:00001321 ! PNS exit glial cell (Drosophila) relationship: part_of FBbt:00005893 ! embryonic/larval peripheral nervous system (Drosophila) [Term] id: FBbt:00001327 name: peripheral glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell in a nerve that is directly associated with its neurites and is not part of subperineurial layer that wraps the nerve. Early in development, cells of this type are involved in axon pathfinding. Later, cells of this type ensheath neurites and some are located at branching points." [FlyBase:FBrf0049575, FlyBase:FBrf0054242, FlyBase:FBrf0064795, FlyBase:FBrf0138519, FlyBase:FBrf0139836] comment: Disambiguation: Some peripheral glia have been incorrectly referred to as 'exit glia' (see Sepp et al., 2001). Exit glia are a distinct class. The confusion has arisen due to some peripheral glia having a similar location to exit glia during a transitory stage of their development (Klambt and Goodman, 1991) prior to reaching their final positions. subset: cur ! cur synonym: "PG" RELATED [] synonym: "exit glia" BROAD [FlyBase:FBrf0139836] is_a: FBbt:00001320 ! PNS glial cell (Drosophila) relationship: part_of UBERON:0001021 ! nerve [Term] id: FBbt:00001328 name: peripheral glial cell 1 of SN (Drosophila) namespace: fly_anatomy.ontology def: "Peripheral glial cell located at the bifurcation of the SNa and SNc (Klambt and Goodman, 1993, Goodman and Doe, 1993)." [FlyBase:FBrf0049575, FlyBase:FBrf0054242, FlyBase:FBrf0064795] subset: cur ! cur synonym: "PG1" RELATED [] synonym: "peripheral glial cell 1" EXACT [] is_a: FBbt:00001327 ! peripheral glial cell (Drosophila) relationship: part_of FBbt:00007328 ! SNa (Drosophila) relationship: part_of FBbt:00007329 ! SNc (Drosophila) [Term] id: FBbt:00001329 name: peripheral glial cell 2 of ISN (Drosophila) namespace: fly_anatomy.ontology def: "Peripheral glial cell associated with the intersegmental nerve (ISN). It is located more proximally than the peripheral glial cell 3 (Klambt and Goodman, 1993; Goodman and Doe, 1993)." [FlyBase:FBrf0049575, FlyBase:FBrf0054242, FlyBase:FBrf0064795] subset: cur ! cur synonym: "PG2" RELATED [] synonym: "peripheral glial cell 2" EXACT [] is_a: FBbt:00001327 ! peripheral glial cell (Drosophila) relationship: part_of FBbt:00001997 ! intersegmental nerve (Drosophila) [Term] id: FBbt:00001330 name: peripheral glial cell 3 of ISN (Drosophila) namespace: fly_anatomy.ontology def: "Peripheral glial cell associated with the intersegmental nerve (ISN). It is located more distally than the peripheral glial cell 2 (Klambt and Goodman, 1993; Goodman and Doe, 1993)." [FlyBase:FBrf0054242, FlyBase:FBrf0064795] subset: cur ! cur synonym: "PG3" RELATED [] synonym: "peripheral glial cell 3" EXACT [] is_a: FBbt:00001327 ! peripheral glial cell (Drosophila) relationship: part_of FBbt:00001997 ! intersegmental nerve (Drosophila) [Term] id: FBbt:00001331 name: peripheral glial cell 4 of SNc (Drosophila) namespace: fly_anatomy.ontology def: "Peripheral glial cell associated with the SNc (Goodman and Doe, 1993). It is located more distally than peripheral glial cell 1." [FlyBase:FBrf0054242, FlyBase:FBrf0064795] subset: cur ! cur synonym: "PG4" RELATED [] synonym: "peripheral glial cell 4" EXACT [] is_a: FBbt:00001327 ! peripheral glial cell (Drosophila) relationship: part_of FBbt:00007329 ! SNc (Drosophila) [Term] id: FBbt:00001332 name: embryonic neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Any neuroblast (FBbt:00005146) that is part of some embryo (FBbt:00000052)." [FBC:auto_generated_definition, FlyBase:FBrf0055900] subset: cur ! cur is_a: CL:0000031 ! neuroblast is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00001333 name: procephalic neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast of the brain, lying below the peripheral neurectoderm. They are usually greater than 10 micrometers in diameter and express stem-cell specific markers. Individual neuroblasts are named according to their position relative to major morphological features (cephalic furrow, invaginating foregut, dorsal and ventral midline, their relative position with respect to each other, their time of segregation and their expression of markers). They are assigned to one of the three brain neuromeres." [FlyBase:FBrf0161021] subset: cur ! cur is_a: CL:0000031 ! neuroblast [Term] id: FBbt:00001334 name: protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) is_a: FBbt:00001333 ! procephalic neuroblast (Drosophila) relationship: part_of FBbt:00000159 ! embryonic labral segment (Drosophila) relationship: part_of FBbt:00005549 ! protocerebrum primordium (Drosophila) [Term] id: FBbt:00001335 name: anterior protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the anterior region of the protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur synonym: "Pa" RELATED [] is_a: FBbt:00001334 ! protocerebral neuroblast (Drosophila) [Term] id: FBbt:00001336 name: Pa1 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001337 name: Pa2 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001338 name: Pa3 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001339 name: Pa4 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001340 name: Pa5 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001341 name: Pa6 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001342 name: Pdm neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001343 name: central protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the central region of the protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur synonym: "Pc" RELATED [] is_a: FBbt:00001334 ! protocerebral neuroblast (Drosophila) [Term] id: FBbt:00001344 name: Pc1 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001345 name: Pc2 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001346 name: Pc3 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001347 name: posterior protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the posterior region of the protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur synonym: "Pp" RELATED [] is_a: FBbt:00001334 ! protocerebral neuroblast (Drosophila) [Term] id: FBbt:00001348 name: Pd1 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001349 name: Pd2 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001350 name: Pd3 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001351 name: Pd4 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001352 name: Pd5 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001353 name: deuterocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the deuterocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur synonym: "deutocerebral neuroblast" EXACT [] is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) is_a: FBbt:00001333 ! procephalic neuroblast (Drosophila) relationship: part_of FBbt:00000160 ! embryonic antennal segment (Drosophila) [Term] id: FBbt:00001354 name: dorsal deuterocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the dorsal region of the deuterocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur synonym: "Da" RELATED [] synonym: "dorsal deutocerebral neuroblast" EXACT [] is_a: FBbt:00001353 ! deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00001355 name: Da1 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001356 name: ventral deuterocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the ventral region of the deuterocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur synonym: "Dc" RELATED [] synonym: "ventral deutocerebral neuroblast" EXACT [] is_a: FBbt:00001353 ! deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00001357 name: Dc1 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001358 name: Dc2 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001359 name: Dc3 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001360 name: posterior deuterocerebral neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "Dp" RELATED [] synonym: "posterior deutocerebral neuroblast" EXACT [] [Term] id: FBbt:00001361 name: Dp1 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001362 name: Dp2 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001363 name: tritocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the tritocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur synonym: "T" RELATED [] is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) is_a: FBbt:00001333 ! procephalic neuroblast (Drosophila) relationship: part_of FBbt:00000161 ! embryonic intercalary segment (Drosophila) [Term] id: FBbt:00001364 name: T1 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001365 name: T2 neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001366 name: supraesophageal ganglion neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron located in the supraesophageal ganglion." [FBC:SPR] subset: cur ! cur is_a: CL:0000540 ! neuron relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00001367 name: SP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired neuron of the embryo/larva. Each(?) abdominal segment contains a pair of SP1 neurons with an axon that crosses the ventral midline as part of the anterior commissure, wraps around the cell body of its contralateral partner and then extends anteriorly as part of the longitudinal connective. During development, these axons pioneer the anterior commissure and longitudinal connectives." [FlyBase:FBrf0053374, FlyBase:FBrf0064795, FlyBase:FBrf0144965] subset: cur ! cur is_a: CL:0000116 ! pioneer neuron relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00001368 name: serotonergic neuron SP2 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired cluster of serotonergic neurons of both larval and adult brain. During larval stages, the cell bodies are located in a cluster in the dorsal cortex, posterior to serotonergic neuron SP1 (FBbt:00007339). Their axons travel to the contralateral hemisphere as part of a dorsal, midline crossing tract. In the adult brain, the cell bodies of these neurons are present in a small cluster in the cortex overlying the anterior medial protocerebrum, posterior to the SP1 cluster." [FlyBase:FBrf0048551] subset: cur ! cur synonym: "SP2 neuron" EXACT [FlyBase:FBrf0048551] synonym: "supraesophageal ganglion neuron 2" EXACT [FlyBase:FBrf0048551] is_a: FBbt:00100359 ! serotonergic SP neuron (Drosophila) relationship: part_of UBERON:0000955 ! brain [Term] id: FBbt:00001369 name: neuroblast of ventral nerve cord primordium (Drosophila) namespace: fly_anatomy.ontology def: "Any neuroblast (FBbt:00005146) that is part of some ventral nerve cord primordium (FBbt:00005554)." [FBC:auto_generated_definition, FlyBase:FBrf0090460, FlyBase:FBrf0098344] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "neuroblast of ventral nervous system" RELATED [] is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00001370 name: stage 1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "The first neuroblast subpopulation delaminating from the ventral neurectoderm towards the end of the second mesodermal cell division, shortly after gastrulation (Hartenstein and Campos-Ortega, 1984). These neuroblasts are generally arranged in two fairly regular longitudinal rows (the medial and lateral longitudinal rows), with a few cells scattered in an intermediate row. Doe (1992) defines the end of S1 as being early embryonic stage 9 following the development of NB3-2." [FlyBase:FBrf0055900, FlyBase:FBrf0073294, FlyBase:FBrf0076117, FlyBase:FBrf0112030, http://uoneuro.uoregon.edu/doelab/nbmap.html] comment: Figure 7 of Hartenstein and Campos-Ortega, (1984), graphically depicts the pattern formed by the population of neuroblasts for the left half of the germ band. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "S1 neuroblast" RELATED [] synonym: "SI neuroblast" RELATED [] is_a: FBbt:00001369 ! neuroblast of ventral nerve cord primordium (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00001371 name: neuroblast NB1-1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB1-1 delaminates at stage 1 and generates the aCC and pCC neurons, glia, interneurons and additional motorneurons in the thoracic segments (http://www.neuro.uoregon.edu/doelab/lineages/NB1-1.html)." [FlyBase:FBrf0055900, FlyBase:FBrf0058118, FlyBase:FBrf0073294, FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB1-1.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "NB2-2" RELATED [FlyBase:FBrf0084809] synonym: "neuroglioblast NB1-1" EXACT [FlyBase:FBrf0058118] is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001372 name: neuroblast NB1-1 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001371 ! neuroblast NB1-1 (Drosophila) is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001373 name: neuroblast NB1-1 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000468 ! neuroglioblast is_a: FBbt:00001371 ! neuroblast NB1-1 (Drosophila) is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001374 name: neuroblast NB2-5 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB2-5 delaminates at S1 and generates a diverse array of cell types including motorneurons, intersegmental interneurons, local interneurons, glial cells and sometimes a PNS sub-clone (http://www.neuro.uoregon.edu/doelab/lineages/NB2-5.html)." [FlyBase:FBrf0055900, FlyBase:FBrf0073294, FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB2-5.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: CL:0000468 ! neuroglioblast is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001375 name: neuroblast NB3-5 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB3-5 delaminates at stage 1 in the interior-most row of the lateral column (Hartenstein and Campos-Ortega, 1984), and generates a diverse array of cell types including motorneurons, intersegmental interneurons, local interneurons, glial cells and sometimes a PNS sub-clone (http://www.neuro.uoregon.edu/doelab/lineages/NB3-5.html)." [FlyBase:FBrf0055900, FlyBase:FBrf0073294, FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB3-5.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001376 name: neuroblast NB5-2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB5-2 delaminates at stage 1 in the medial column (Hartenstein and Campos-Ortega, 1984). It generates a single motorneuron innervating muscle 12 via the SNb and a large number of intersegmental and local interneurons. Most of the posterior commissure derives from NB5-2 interneurons (http://www.neuro.uoregon.edu/doelab/lineages/NB5-2.html)." [FlyBase:FBrf0055900, FlyBase:FBrf0073294, FlyBase:FBrf0076117, FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB5-2.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "medial SI neuroblast NB 5-2" RELATED [] is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001377 name: neuroblast NB5-6 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB5-6 generates lateral sub-perineural glial cells and interneurons (http://www.neuro.uoregon.edu/doelab/lineages/NB5-6.html)." [FlyBase:FBrf0055900, FlyBase:FBrf0073294, FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB5-6.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: CL:0000468 ! neuroglioblast is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001378 name: neuroblast NB5-6 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001377 ! neuroblast NB5-6 (Drosophila) is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001379 name: neuroblast NB5-6 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001377 ! neuroblast NB5-6 (Drosophila) is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001380 name: neuroblast NB7-1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB7-1 is the largest neuroblast lineage generating 40 cells or more, including the U motorneurons and a large number of local interneurons. It also frequently generates the putative segment boundary cells (http://www.neuro.uoregon.edu/doelab/lineages/NB7-1.html)." [FlyBase:FBrf0055900, FlyBase:FBrf0073294, FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB7-1.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001381 name: neuroblast NB7-4 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB7-4 generates a large number of glia (http://www.neuro.uoregon.edu/doelab/lineages/NB7-4.html)." [FlyBase:FBrf0055900, FlyBase:FBrf0073294, FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB7-4.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: CL:0000468 ! neuroglioblast is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001382 name: neuroblast MP2 (Drosophila) namespace: fly_anatomy.ontology def: "Midline precursor cell that divides only once to produce the intersegmental interneurons dMP2 and vMP2 neurons. Despite its name, it forms bilaterally as part of the medial column of stage1 neuroblasts (Schmid et al., 1999)." [FlyBase:FBrf0055900, FlyBase:FBrf0112030] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001383 name: stage 2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast delaminating in the second wave of neuroblast delamination from the ventral neuroectoderm. This stage begins in embryonic stage 9 ending in stage 10, and the neuroblasts primarily delaminate into the intermediate column (Doe, 1992)." [FlyBase:FBrf0055900, FlyBase:FBrf0076117] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "S2 neuroblast" RELATED [] synonym: "SII neuroblast" RELATED [] is_a: FBbt:00001369 ! neuroblast of ventral nerve cord primordium (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00001384 name: neuroblast NB1-2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB1-2 delaminates at S2 and generates 4-6 intersegmental interneurons. It also produces approximately 20 local interneurons and, in the thoracic segments, the semaphorin II (FBgn0011260) positive DC motorneuron (http://www.neuro.uoregon.edu/doelab/lineages/NB1-2.html)." [FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB1-2.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/12description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "NB1-1" RELATED [] synonym: "neuroglioblast 1-1" RELATED [] is_a: FBbt:00001383 ! stage 2 neuroblast (Drosophila) [Term] id: FBbt:00001385 name: neuroblast NB2-2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB2-2 delaminates at S2 and generates two to three motorneurons that innervate anterior lateral muscles via the SNa. It generates a large number of local interneurons and a smaller number of late-developing intersegmental interneurons (http://www.neuro.uoregon.edu/doelab/lineages/NB2-2.html)." [FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB2-2.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/22%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "NB2-3" RELATED [] is_a: FBbt:00001383 ! stage 2 neuroblast (Drosophila) [Term] id: FBbt:00001386 name: neuroblast NB2-2 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000468 ! neuroglioblast is_a: FBbt:00001385 ! neuroblast NB2-2 (Drosophila) is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001387 name: neuroblast NB2-2 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001385 ! neuroblast NB2-2 (Drosophila) is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001388 name: neuroblast NB3-2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB3-2 delaminates at S1 and generates as many as 6 motorneurons and a cluster if local interneurons. It is the mirror image of the clone derived from NB4-2 (http://www.neuro.uoregon.edu/doelab/lineages/NB3-2.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB3-2.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/32%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001389 name: neuroblast NB4-2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB4-2 delaminates at S2 in the intermediate column and produces the well characterized RP2 motorneuron (FBbt:00001453), which innervates muscles 2, 9 and 11. It also produces the Cousins if RP2 motorneurons (CoR), which generate the entirety of the SNc, innervating muscles 26, 27 and 29. It also generates local interneurons and, in a small number of cases, an epidermal subclone (http://www.neuro.uoregon.edu/doelab/lineages/NB4-2.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB4-2.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/42%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001383 ! stage 2 neuroblast (Drosophila) [Term] id: FBbt:00001390 name: neuroblast NB5-3 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB5-3 delaminates at S1. It generates an SNa motorneuron anteriorly and intersegmental interneurons in every segment (http://www.neuro.uoregon.edu/doelab/lineages/NB5-3.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB5-3.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/53%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001370 ! stage 1 neuroblast (Drosophila) [Term] id: FBbt:00001391 name: neuroblast NB6-2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB6-2 delaminates in S2 in the intermediate column. Its lineage contains 8-16 interneurons that project in two bundles across the posterior commissure (http://www.neuro.uoregon.edu/doelab/lineages/NB6-2.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB6-2.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/62%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001383 ! stage 2 neuroblast (Drosophila) [Term] id: FBbt:00001392 name: neuroblast NB7-2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB7-2 delaminates at S2 in the intermediate column. Its lineage contains 8-14 interneurons that project either contralaterally in the posterior commissure or ipsilaterally. It is the only neuroblast clone that generates ipsilaterally-projecting intersegmental neurons (http://www.neuro.uoregon.edu/doelab/lineages/NB7-2.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB7-2.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/72%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001383 ! stage 2 neuroblast (Drosophila) [Term] id: FBbt:00001393 name: stage 3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast delaminating in the third wave of neuroblast delamination from the ventral neurectoderm. This wave begins during embryonic stage 10 and end during stage 11, and the neuroblasts generally delaminate into the medial and lateral edge of the neuroblast array (Doe, 1992)." [FlyBase:FBrf0055900, FlyBase:FBrf0076117] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "S3 neuroblast" RELATED [] synonym: "SIII neuroblast" RELATED [] is_a: FBbt:00001369 ! neuroblast of ventral nerve cord primordium (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00001394 name: neuroblast NB3-1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB3-1 delaminates at S3 in the medial column of neuroblasts. It generates the well characterized RP1 (FBbt:00001452), RP3 (FBbt:00001455), RP4 (FBbt:00001456) and RP5 (FBbt:00001457) motorneurons and a cluster of intersegmental interneurons. It also generates a variable number of local of local interneurons (http://www.neuro.uoregon.edu/doelab/lineages/NB3-1.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB3-1.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/31%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001393 ! stage 3 neuroblast (Drosophila) [Term] id: FBbt:00001395 name: neuroblast NB3-1 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001394 ! neuroblast NB3-1 (Drosophila) is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001396 name: neuroblast NB3-1 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001394 ! neuroblast NB3-1 (Drosophila) is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001397 name: neuroblast NB4-1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB4-1 delaminates at S3 in the medial column. It produces the putative motorneuron of the transverse nerve (FBbt:00001996) and a variety of intersegmental and local interneurons." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB4-1.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/41%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001393 ! stage 3 neuroblast (Drosophila) [Term] id: FBbt:00001398 name: neuroblast NB6-1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB6-1 generates intersegmental and ~10-16 interneurons in every segment, but only generates a motorneuron in segment T1 (http://www.neuro.uoregon.edu/doelab/lineages/NB6-1.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB6-1.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/61%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001393 ! stage 3 neuroblast (Drosophila) [Term] id: FBbt:00001399 name: neuroblast NB6-4 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB6-4 generates glia in abdominal segments as well as interneurons in thoracic segments." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB6-4.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/64%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001393 ! stage 3 neuroblast (Drosophila) [Term] id: FBbt:00001400 name: neuroblast NB6-4 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "NB6-4T" RELATED [] is_a: FBbt:00001399 ! neuroblast NB6-4 (Drosophila) is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001401 name: neuroblast NB6-4 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "NB6-4A" RELATED [] is_a: FBbt:00001399 ! neuroblast NB6-4 (Drosophila) is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001402 name: neuroblast NB6-4a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001401 ! neuroblast NB6-4 of abdomen (Drosophila) [Term] id: FBbt:00001403 name: neuroblast NB6-4b (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001401 ! neuroblast NB6-4 of abdomen (Drosophila) [Term] id: FBbt:00001404 name: neuroblast NB1-3 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast located at the embryonic segment border close to the tracheal pit and produces both neurons and glial cells (Schmidt et al., 1997)." [FlyBase:FBrf0098344] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: CL:0000468 ! neuroglioblast is_a: FBbt:00001399 ! neuroblast NB6-4 (Drosophila) [Term] id: FBbt:00001405 name: neuroblast GP (Drosophila) namespace: fly_anatomy.ontology def: "Unlike the other neuroblasts, the glial precursor (GP) does not divide to make GMCs or neurons. Dividing roughly symmetrically during embryonic stage 11, it produces two cells that eventually divide to generate six longitudinal glia." [http://www.neuro.uoregon.edu/doelab/neuro/gp.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "GP" EXACT [http://www.neuro.uoregon.edu/doelab/neuro/gp.html] synonym: "Glioblast" EXACT [http://www.neuro.uoregon.edu/doelab/neuro/gp.html] synonym: "glial precursor" EXACT [http://www.neuro.uoregon.edu/doelab/neuro/gp.html] is_a: FBbt:00001393 ! stage 3 neuroblast (Drosophila) [Term] id: FBbt:00001406 name: neuroblast GPa (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001405 ! neuroblast GP (Drosophila) [Term] id: FBbt:00001407 name: neuroblast GPb (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001405 ! neuroblast GP (Drosophila) [Term] id: FBbt:00001408 name: neuroblast X (Drosophila) namespace: fly_anatomy.ontology def: "Stage 3 neuroblast that expresses achaete (FBgn0000022)." [http://www.neuro.uoregon.edu/doelab/neuro/x.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001393 ! stage 3 neuroblast (Drosophila) [Term] id: FBbt:00001409 name: stage 4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast delaminating in the fourth wave of neuroblast delamination from the ventral neurectoderm. This wave begins during embryonic stage 11, ending in late stage 11. The S4 neuroblasts delaminate into columns in between the existing intermediate and lateral columns of neuroblasts (Doe, 1992)." [FlyBase:FBrf0055900, FlyBase:FBrf0076117] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "S4 neuroblast" RELATED [] is_a: FBbt:00001369 ! neuroblast of ventral nerve cord primordium (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00001410 name: neuroblast NB2-1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB2-1 delaminates at S4 and generates approximately 9-15 local interneurons by embryonic stage 17. The fibers from these cells cross the midline via a single projection in a posterior fascicle of the anterior commissure (http://www.neuro.uoregon.edu/doelab/lineages/texts/21%20description.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB2-1.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/21%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001409 ! stage 4 neuroblast (Drosophila) [Term] id: FBbt:00001411 name: neuroblast NB2-4 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB2-4 delaminates at S4 and generates a contralaterally projecting motorneuron and approximately 8 local interneurons." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB2-4.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/24%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001409 ! stage 4 neuroblast (Drosophila) [Term] id: FBbt:00001412 name: neuroblast NB2-4 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001411 ! neuroblast NB2-4 (Drosophila) is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001413 name: neuroblast NB2-4 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001411 ! neuroblast NB2-4 (Drosophila) is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001414 name: neuroblast NB3-4 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB3-4 delaminates at S5. It produces a single motorneuron located on the posterior boundary of the clone and projects into the anterior root of the ISN by embryonic stage 15. Along with several local interneurons, it also produces at least 2 intersegmental interneurons by embryonic stage 17, one extending ipsilaterally, the other crossing the anterior commissure before extending anteriorly (http://www.neuro.uoregon.edu/doelab/lineages/texts/34description.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/34description.html] comment: Schmid et al., (1999), and the associated web page (http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html), state that because neuroblasts NB3-4 and NB4-4 express a similar array of molecular markers, delaminate at similar times, and generate similar clones, these neuroblasts are indistinguishable using current visualization techniques. They further comment that they are unable to rule out the possibility that only one neuroblast generates this clone (Schmid et al., 1999). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001420 ! stage 5 neuroblast (Drosophila) [Term] id: FBbt:00001415 name: neuroblast NB4-4 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB4-4 delaminates at S4. It generates a single motorneuron located at the posterior ventral boundary of the clone and projects into the anterior root of the ISN by stage 5. Amongst several local interneurons, it generates at least two intersegmental interneurons, one extending anterior ipsilaterally and the other crossing the anterior commissure (http://www.neuro.uoregon.edu/doelab/lineages/texts/44%20description.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/44%20description.html] comment: Schmid et al., (1999), and the associated web page (http://www.neuro.uoregon.edu/doelab/lineages/NB3-4and4-4.html), state that because neuroblasts NB3-4 and NB4-4 express a similar array of molecular markers, delaminate at similar times, and generate similar clones, these neuroblasts are indistinguishable using current visualization techniques. They further comment that they are unable to rule out the possibility that only one neuroblast generates this clone (Schmid et al., 1999). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001409 ! stage 4 neuroblast (Drosophila) [Term] id: FBbt:00001416 name: neuroblast NB5-4 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB5-4 most frequently delaminates at S4 in an intermediate column (FBrf0098344)." [FlyBase:FBrf0098344, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB5-4.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/54%20description.html] comment: Using DiI with antibody labelling, Schmidt et al., (1997) propose NB5-4 produces 5-9 thoracic neurons or 3-4 abdominal motorneurons with ipsilateral targets. Schmid et al., (1999), also use DiI with en-GFP, but find 2-3 large cells that match descriptions of CCAP/CAP+ neurosecretory cells, along with abdomen-specific interneurons. Also, Schmid et al., (1999) state that NB5-4 delaminates during S5, whilst Schmidt et al., (1997) find that delamination occurs over the period of S3/4 to S5, most frequently at S4, and as such we have chosen to define NB5-4 as a stage 4 neuroblast. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur subset: olfactory_system_draft ! adult olfactory system model is_a: CL:0000468 ! neuroglioblast is_a: FBbt:00001409 ! stage 4 neuroblast (Drosophila) [Term] id: FBbt:00001417 name: neuroblast NB5-4 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001416 ! neuroblast NB5-4 (Drosophila) is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) [Term] id: FBbt:00001418 name: neuroblast NB5-4 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001416 ! neuroblast NB5-4 (Drosophila) is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001419 name: neuroblast MNB (Drosophila) namespace: fly_anatomy.ontology def: "An unpaired neuroblast delaminating in stage 4 along the ventral midline of the CNS. It gives rise to a cluster of 5-8 cells with short bilateral projections in the anterior and posterior commissures and long fibers that enters the intersegmental nerve." [FlyBase:FBrf0072659, FlyBase:FBrf0112030] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "median neuroblast" EXACT [FlyBase:FBrf0072659] is_a: FBbt:00001409 ! stage 4 neuroblast (Drosophila) [Term] id: FBbt:00001420 name: stage 5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast delaminating in the fifth and final wave of neuroblast delamination from the ventral neurectoderm. This wave begins during embryonic in late stage 11. The S5 neuroblasts delaminate into columns in between the existing intermediate and lateral columns of neuroblasts (Doe, 1992)." [FlyBase:FBrf0055900, FlyBase:FBrf0076117] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "S5 neuroblast" RELATED [] is_a: FBbt:00001369 ! neuroblast of ventral nerve cord primordium (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00001421 name: neuroblast NB2-3 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB2-3 delaminates at S5. It generates three large, round axonless cells at the dorsal side of the thoracic clones which are proposed by Schmid et al., (1999) to be latent leg motorneurons that will extend axons during leg disk eversion. It also generates 2-4 small interneurons at the ventral side of the clone. In the abdominal segments only a single large neuroblast is observed at embryonic stage 17, which either does not divide or all progeny die." [FlyBase:FBrf0084809, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB2-3.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/23%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "NB1-2" RELATED [FlyBase:FBrf0055900] is_a: FBbt:00001420 ! stage 5 neuroblast (Drosophila) [Term] id: FBbt:00001422 name: neuroblast NB3-3 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB3-3 delaminates predominantly at S4 (Schmidt et al., 1997). It generates a single motorneuron positioned midway along the dorsoventral axis, though slightly lateral and posterior. It also generates 10-18 interneurons that project across the anterior commissure (Schmid et al., 1999)." [FlyBase:FBrf0098344, http://www.neuro.uoregon.edu/doelab/lineages/NB3-3.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/33description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001409 ! stage 4 neuroblast (Drosophila) [Term] id: FBbt:00001423 name: neuroblast NB4-3 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB4-3 delaminates at S5. It generates 8-13 neurons, 10-12 of which are small, axonless interneurons." [FlyBase:FBrf0098344, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB4-3.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/43%20description.html] comment: Schmidt et al., (1997) describe this lineage as producing motorneurons that project into the SN. Contrarily, Schmid et al., (1999) suggest that the cells identified as motorneurons by Schmidt are actually neurosecretory cells of the TN. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001420 ! stage 5 neuroblast (Drosophila) [Term] id: FBbt:00001424 name: neuroblast NB5-1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB5-1 delaminates at S5 in the medial column. It generates approximately 6-9 local interneurons that predominantly project across the posterior commissure (Schmid et al., 1999)." [FlyBase:FBrf0098344, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB5-1.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/51%20description.html] comment: Schmid et al., (1999) comment that NB5-2 may give rise to a larger number of clones, including at least one motorneuron, but were not observed due to observational restrictions. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001420 ! stage 5 neuroblast (Drosophila) [Term] id: FBbt:00001425 name: neuroblast NB5-5 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB5-5 delaminates at S5. Thoracic and abdominal clones contain 8-11 large neurons including interneurons and neurosecretory cells." [FlyBase:FBrf0098344, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB5-5.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/55%20description.html] comment: Schmid et al., (1999) suggest that NB5-5 may be equivalent to clone Y described by Schmidt et al., (1997). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "clone Y" RELATED [FlyBase:FBrf0098344] is_a: FBbt:00001420 ! stage 5 neuroblast (Drosophila) [Term] id: FBbt:00001426 name: neuroblast NB7-3 (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast NB7-3 delaminates at S5. It generates the relatively small GW motorneuron, positioned on the lateral side of the clone and projects out the posterior root of the ISN. It also generates three slightly larger interneurons that project across the posterior commissure, and a small axonless cell. It may also generate a glial cell (http://www.neuro.uoregon.edu/doelab/lineages/texts/73%20description.html)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/NB7-3.html, http://www.neuro.uoregon.edu/doelab/lineages/texts/73%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001420 ! stage 5 neuroblast (Drosophila) [Term] id: FBbt:00001427 name: MP1 precursor (Drosophila) namespace: fly_anatomy.ontology def: "Unpaired precursor cell that divides to produce two MP1 interneurons." [FlyBase:FBrf0041721, FlyBase:FBrf0049007, FlyBase:FBrf0072659, FlyBase:FBrf0190277] subset: cur ! cur synonym: "MP1 neurons" RELATED [] synonym: "midline precursor 1 neuron" EXACT [FlyBase:FBrf0041721, FlyBase:FBrf0072659] is_a: FBbt:00005565 ! ventral midline neuroblast (Drosophila) [Term] id: FBbt:00001428 name: VUM precursor (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast precursor to the VUM lineage." [FlyBase:FBrf0064795, FlyBase:FBrf0072659] subset: cur ! cur is_a: FBbt:00005565 ! ventral midline neuroblast (Drosophila) [Term] id: FBbt:00001429 name: posterior VUM precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001428 ! VUM precursor (Drosophila) [Term] id: FBbt:00001430 name: mid VUM precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001428 ! VUM precursor (Drosophila) [Term] id: FBbt:00001431 name: anterior VUM precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001428 ! VUM precursor (Drosophila) [Term] id: FBbt:00001432 name: UMI precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001433 ! embryonic ganglion mother cell (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00001433 name: embryonic ganglion mother cell (Drosophila) namespace: fly_anatomy.ontology def: "Any ganglion mother cell (FBbt:00005149) that is part of some embryo (FBbt:00000052)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00001434 name: ganglion mother cell GMC1-1a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB1-1." [FlyBase:FBrf0138252] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001371 ! neuroblast NB1-1 (Drosophila) [Term] id: FBbt:00001435 name: ganglion mother cell GMC2-5a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB2-5." [FlyBase:FBrf0055900, FlyBase:FBrf0064795] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001374 ! neuroblast NB2-5 (Drosophila) [Term] id: FBbt:00001436 name: ganglion mother cell GMC3-2a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB3-2." [FlyBase:FBrf0055900, FlyBase:FBrf0064795] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001388 ! neuroblast NB3-2 (Drosophila) [Term] id: FBbt:00001437 name: ganglion mother cell GMC3-5a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB3-5." [FlyBase:FBrf0055900, FlyBase:FBrf0064795] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001375 ! neuroblast NB3-5 (Drosophila) [Term] id: FBbt:00001438 name: ganglion mother cell GMC4-2a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB4-2." [FlyBase:FBrf0055900, FlyBase:FBrf0064795] subset: cur ! cur synonym: "GMC-1" EXACT [FlyBase:FBrf0206577] is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001389 ! neuroblast NB4-2 (Drosophila) [Term] id: FBbt:00001439 name: ganglion mother cell GMC4-2b (Drosophila) namespace: fly_anatomy.ontology def: "Second born ganglion mother cell of neuroblast NB4-2." [FlyBase:FBrf0055900, FlyBase:FBrf0064795, http://www.neuro.uoregon.edu/doelab/lineages/texts/42%20description.html] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001389 ! neuroblast NB4-2 (Drosophila) [Term] id: FBbt:00001440 name: ganglion mother cell GMC5-2a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB5-2." [FlyBase:FBrf0055900, FlyBase:FBrf0064795, http://www.neuro.uoregon.edu/doelab/lineages/texts/52%20description.html] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001376 ! neuroblast NB5-2 (Drosophila) [Term] id: FBbt:00001441 name: ganglion mother cell GMC5-2b (Drosophila) namespace: fly_anatomy.ontology def: "Second born ganglion mother cell of neuroblast NB5-2." [FlyBase:FBrf0055900, FlyBase:FBrf0064795, http://www.neuro.uoregon.edu/doelab/lineages/texts/52%20description.html] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001376 ! neuroblast NB5-2 (Drosophila) [Term] id: FBbt:00001442 name: ganglion mother cell GMC5-6a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB5-6." [FlyBase:FBrf0055900, FlyBase:FBrf0064795, FlyBase:FBrf0098344, http://www.neuro.uoregon.edu/doelab/lineages/texts/56%20description.html] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001377 ! neuroblast NB5-6 (Drosophila) [Term] id: FBbt:00001443 name: ganglion mother cell GMC6-2a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB6-2." [FlyBase:FBrf0055900, FlyBase:FBrf0064795, FlyBase:FBrf0090460, http://www.neuro.uoregon.edu/doelab/lineages/texts/62%20description.html] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001391 ! neuroblast NB6-2 (Drosophila) [Term] id: FBbt:00001444 name: ganglion mother cell GMC7-4a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB7-4." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, http://www.neuro.uoregon.edu/doelab/lineages/texts/74%20description.html] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001381 ! neuroblast NB7-4 (Drosophila) [Term] id: FBbt:00001445 name: ganglion mother cell GMC7-4b (Drosophila) namespace: fly_anatomy.ontology def: "Second born ganglion mother cell of neuroblast NB7-4." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, http://www.neuro.uoregon.edu/doelab/lineages/texts/74%20description.html] subset: cur ! cur is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001381 ! neuroblast NB7-4 (Drosophila) [Term] id: FBbt:00001446 name: embryonic/larval neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuron that is part of the embryonic/larval nervous system." [FlyBase:FBrf0090460, FlyBase:FBrf0098344] subset: cur ! cur synonym: "embryonic neuron" EXACT [] synonym: "larval neuron" EXACT [] is_a: CL:0000540 ! neuron relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001447 name: aCC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron whose large round cell body sits at the dorsal surface of the CNS, just posterior to the posterior commissure and longitudinal connective. By embryonic stage 17, the aCC neuron has extended an axon to the dorsal midline of the embryo and synapses on muscle 1. Also, by embryonic stage 16, the aCC has a short contralaterally projecting neurite extending into the posterior commissure." [FlyBase:FBrf0064795, http://www.neuro.uoregon.edu/doelab/lineages/texts/11%20description.html] subset: cur ! cur synonym: "1-1a1" RELATED [] synonym: "anterior corner cell" RELATED [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001371 ! neuroblast NB1-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001448 name: pCC neuron (Drosophila) namespace: fly_anatomy.ontology def: "The pCC is an interneuron whose large, round cell body is located just posterior, medial and ventral to the aCC motor neuron (FBbt:00001447). It extends a neurite anteriorly along one of the longitudinal fascicles (Doe et al., 1988)." [FlyBase:FBrf0048756, FlyBase:FBrf0064795, http://www.neuro.uoregon.edu/doelab/lineages/texts/11%20description.html] subset: cur ! cur synonym: "1-1a2" RELATED [] synonym: "posterior corner cell" RELATED [] synonym: "sibling of aCC" EXACT [FlyBase:FBrf0086924] is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001371 ! neuroblast NB1-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001449 name: fpCC neuron (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00100289 def: "Motor neuron developing in thoracic segments from neuroblast NB1-1, and extending a neurite along the SNb to muscles 12 and 13. Its cell body is located adjacent to the neuroblast MNB in the posterior part of the neuromere." [FlyBase:FBrf0105282] subset: cur ! cur synonym: "CoA" EXACT [http://www.neuro.uoregon.edu/doelab/lineages/texts/11%20description.html] synonym: "FP cell" RELATED [] synonym: "cousin of aCC" EXACT [http://www.neuro.uoregon.edu/doelab/lineages/texts/11%20description.html] synonym: "friend of pCC cell" RELATED [] is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001371 ! neuroblast NB1-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001450 name: segmental nerve pioneer neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron that, along with one or two other neurons, pioneers the segmental nerve. The cell bodies of this cluster of 2-3 neurons are located posterior and slightly more lateral than the aCC and pCC neurons." [FlyBase:FBrf0105282] subset: cur ! cur synonym: "SN-pioneer" EXACT [FlyBase:FBrf0105282] synonym: "SNp" RELATED [] is_a: CL:0000116 ! pioneer neuron relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001451 name: RP neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of the embryonic/larval CNS. The RP neurons are mainly motor neurons. An RP motor neuron innervates each of muscles 2, 3, 6, 7, 11, 12, 13, 14, 19, 20, 28 and 30. RP2sib is the only RP neuron not to be a motor neuron." [FlyBase:FBrf0047653, FlyBase:FBrf0064795, FlyBase:FBrf0112030] comment: The \"RP\" name derives from the observation by Michael Bate and Corey Goodman that the large dorsal RP motoneurons are easily poked, and in that way reminded the two of \"raw prawns\", an Australian term of endearment (http://www.neuro.uoregon.edu/doelab/lineages/texts/31%20description.html). subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001452 name: RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from neuroblast NB3-1. Its cell body is located dorsally within the neuromere and projects its axon to arborize along the medial face of muscle 13 (Sink and Whitington, 1991)." [FlyBase:FBrf0047653, FlyBase:FBrf0053781, http://www.neuro.uoregon.edu/doelab/lineages/texts/31%20description.html] subset: cur ! cur is_a: FBbt:00001451 ! RP neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001394 ! neuroblast NB3-1 (Drosophila) [Term] id: FBbt:00001453 name: RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from neuroblast NB4-2. The large cell body is located at the extreme dorsal surface of the CNS above the junction of the anterior commissure and the longitudinal connective. Its axon projects ipsilaterally via the posterior root of the ISN and synapses with muscle 2, 3, 11, 19 and 20 (Schmid et al., 1999)." [FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/texts/42%20description.html] subset: cur ! cur synonym: "4-2a1" RELATED [] is_a: FBbt:00001451 ! RP neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001438 ! ganglion mother cell GMC4-2a (Drosophila) [Term] id: FBbt:00001454 name: RP2sib neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron developing from GMC4-2a, the first born ganglion mother cell differentiating from neuroblast NB4-2 (Bhat et al., 1995). Its ultimate fate is unknown, but can be distinguished from its sibling motor neuron, RP2 (FBbt:00001453), by lower expression of markers such as the membrane protein recognized by monoclonal antibody 22C10, eve (FBgn0000606), or ftz (FBgn0001077)." [FlyBase:FBrf0055900, FlyBase:FBrf0081448] subset: cur ! cur synonym: "4-2a2" EXACT [FlyBase:FBrf0055900] synonym: "RP2/sib" EXACT [FlyBase:FBrf0081448] synonym: "sib" RELATED [FlyBase:FBrf0081448] is_a: FBbt:00001451 ! RP neuron (Drosophila) [Term] id: FBbt:00001455 name: RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from neuroblast NB3-1. Its cell body is located ventral and lateral to RP1 and RP4, and it projects an axon contralaterally from SNb to innervate muscles 6 and 7 (Schmid et al., 1999; Sink and Whitington, 1991)." [FlyBase:FBrf0053781, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/texts/31%20description.html] subset: cur ! cur is_a: FBbt:00001451 ! RP neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001394 ! neuroblast NB3-1 (Drosophila) [Term] id: FBbt:00001456 name: RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from neuroblast NB3-1. Its cell body is located dorsally in the neuromere, and projects its axon to arborize on the medial face of muscle 13 (Sink and Whitington, 1991)." [FlyBase:FBrf0053781, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/texts/31%20description.html] subset: cur ! cur is_a: FBbt:00001451 ! RP neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001394 ! neuroblast NB3-1 (Drosophila) [Term] id: FBbt:00001457 name: RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from neuroblast NB3-1. It is the most anteriorly located or the RP neurons, and its axon arborizes on muscles 13, 14, 15 and 16 (Schmid et al., 1999; Sink and Whitington, 1991)." [FlyBase:FBrf0053781, FlyBase:FBrf0112030, http://www.neuro.uoregon.edu/doelab/lineages/texts/31%20description.html] subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00001451 ! RP neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001394 ! neuroblast NB3-1 (Drosophila) [Term] id: FBbt:00001458 name: 1-1I (Drosophila) namespace: fly_anatomy.ontology def: "Ipsilaterally projecting interneuron developing from neuroblast NB1-1 segment specific lineages." [FlyBase:FBrf0090460] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001371 ! neuroblast NB1-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001459 name: 1-1I of thorax (Drosophila) namespace: fly_anatomy.ontology def: "Ipsilaterally projecting interneuron developing from neuroblast NB1-1 of the thorax." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001458 ! 1-1I (Drosophila) relationship: develops_from FBbt:00001372 ! neuroblast NB1-1 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001460 name: 1-1I of abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Ipsilaterally projecting interneuron developing from neuroblast NB1-1 of the abdomen." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001458 ! 1-1I (Drosophila) relationship: develops_from FBbt:00001373 ! neuroblast NB1-1 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001461 name: 1-2I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from neuroblast NB1-2." [FlyBase:FBrf0090460] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001384 ! neuroblast NB1-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001462 name: 1-2Ii (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from neuroblast NB1-2 whose axon fasciculates with an ipsilaterally directed fascicle formed at the end of embryonic stage 16." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001461 ! 1-2I (Drosophila) relationship: develops_from FBbt:00001384 ! neuroblast NB1-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001463 name: 1-2Icp (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB2-1 lineage and that fasciculates with a contralaterally projecting bundle that projects through the posterior commissure of the neuromere." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001461 ! 1-2I (Drosophila) relationship: develops_from FBbt:00001384 ! neuroblast NB1-2 (Drosophila) [Term] id: FBbt:00001464 name: 1-2Ica (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB2-1 lineage and that fasciculates with a contralaterally projecting bundle that projects through the anterior commissure of the adjacent neuromere before turning anteriorly." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001461 ! 1-2I (Drosophila) relationship: develops_from FBbt:00001384 ! neuroblast NB1-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001465 name: 1-3I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001404 ! neuroblast NB1-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001466 name: 2-1I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB2-1 lineage." [FlyBase:FBrf0090460] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001410 ! neuroblast NB2-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001467 name: 2-1Ii (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB2-1 lineage and that fasciculates with an ipsilaterally projecting bundle." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001466 ! 2-1I (Drosophila) relationship: develops_from FBbt:00001410 ! neuroblast NB2-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001468 name: 2-1Ic (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB2-1 lineage and that projects through the anterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001466 ! 2-1I (Drosophila) relationship: develops_from FBbt:00001410 ! neuroblast NB2-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001469 name: 2-2I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron deriving from the neuroblast NB2-2 lineage." [FlyBase:FBrf0090460] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001470 name: 2-2I of thorax (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from NB2-1 of the thorax. These neurons form a fascicle of about 10 axons that projects contralaterally through the anterior commissure. Unlike the 2-2I of abdomen, the 2-2I fascicle of thorax does not turn anteriorly after reaching the contralateral connective." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001469 ! 2-2I (Drosophila) relationship: develops_from FBbt:00001386 ! neuroblast NB2-2 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001471 name: 2-2I of abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the NB2-1 of the neuroblast of the abdomen. Projections from these neurons form a fascicle that projects through the anterior commissure and then turns anteriorly after reaching the contralateral connective." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001469 ! 2-2I (Drosophila) relationship: develops_from FBbt:00001387 ! neuroblast NB2-2 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001472 name: 2-4I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001473 name: 2-4I of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001472 ! 2-4I (Drosophila) relationship: develops_from FBbt:00001412 ! neuroblast NB2-4 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001474 name: 2-4I of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001472 ! 2-4I (Drosophila) relationship: develops_from FBbt:00001413 ! neuroblast NB2-4 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001475 name: 2-5I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001476 name: 2-5Ic (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001475 ! 2-5I (Drosophila) relationship: develops_from FBbt:00001374 ! neuroblast NB2-5 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001477 name: 2-5Ic1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001475 ! 2-5I (Drosophila) relationship: develops_from FBbt:00001374 ! neuroblast NB2-5 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001478 name: 2-5Ii (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001475 ! 2-5I (Drosophila) relationship: develops_from FBbt:00001374 ! neuroblast NB2-5 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001479 name: 3-1I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron deriving from the neuroblast NB3-1 lineage." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001480 name: 3-1I of thorax (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from neuroblast NB3-1 of the thorax. The projections of these interneurons form a fascicle that projects through the anterior commissure. Unlike the fascicle formed by abdominal 3-1I, it does not show any appreciable bifurcation in the contralateral connective." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001479 ! 3-1I (Drosophila) relationship: develops_from FBbt:00001395 ! neuroblast NB3-1 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001481 name: 3-1I of abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from neuroblast NB3-1 of the abdomen 3-1I. The projections of these interneurons form a fascicle that projects through the anterior commissure and bifurcates in an anterior-posterior direction along the contralateral connective." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001479 ! 3-1I (Drosophila) relationship: develops_from FBbt:00001396 ! neuroblast NB3-1 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001482 name: 3-2I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron derived from the neuroblast NB3-2 lineage. There are only one or two of these per lineage. Their fibers project contralaterally." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001388 ! neuroblast NB3-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001483 name: 3-3I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001484 name: 3-3Ic (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001483 ! 3-3I (Drosophila) relationship: develops_from FBbt:00001422 ! neuroblast NB3-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001485 name: 3-3Ii (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001483 ! 3-3I (Drosophila) relationship: develops_from FBbt:00001422 ! neuroblast NB3-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001486 name: 3-5I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001487 name: 3-5Ic (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001486 ! 3-5I (Drosophila) relationship: develops_from FBbt:00001375 ! neuroblast NB3-5 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001488 name: 3-5Ii (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001486 ! 3-5I (Drosophila) relationship: develops_from FBbt:00001375 ! neuroblast NB3-5 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001489 name: 4-1I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB4-1 lineage." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001490 name: 4-1Ii (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB4-1 lineage whose projections form a bundle that projects ipsilaterally and anteriorly." [FlyBase:FBrf0090460] subset: cur ! cur is_a: FBbt:00001489 ! 4-1I (Drosophila) relationship: develops_from FBbt:00001397 ! neuroblast NB4-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001491 name: 4-1Ica (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB4-1 lineage whose projections form a bundle that projects contralaterally projecting via the anterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001489 ! 4-1I (Drosophila) relationship: develops_from FBbt:00001397 ! neuroblast NB4-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001492 name: 4-1Icp (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that develops from the neuroblast NB4-1 lineage whose projections form a bundle that projects contralaterally projecting via the posterior commissure. This fascicle develops during mid to late embryonic stage 16." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001489 ! 4-1I (Drosophila) relationship: develops_from FBbt:00001397 ! neuroblast NB4-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001493 name: 4-2I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB4-2 lineage. These project contralaterally via the anterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001389 ! neuroblast NB4-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001494 name: 4-4I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001415 ! neuroblast NB4-4 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001495 name: 5-1I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB5-1 lineage. These neurons form a bundle that projects contralaterally through the posterior commissure." [FlyBase:FBrf0090460] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001424 ! neuroblast NB5-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001496 name: 5-2I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB5-2 lineage." [FlyBase:FBrf0090460] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001376 ! neuroblast NB5-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001497 name: 5-2Ica1 (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB5-2 lineage whose projections form a bundle that projects through the anterior commissure, along its anterior border and immediately turns anteriorly upon reaching the contralateral connective." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001496 ! 5-2I (Drosophila) relationship: develops_from FBbt:00001376 ! neuroblast NB5-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001498 name: 5-2Ica2 (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB5-2 that projects along the posterior of the border of the anterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001496 ! 5-2I (Drosophila) relationship: develops_from FBbt:00001376 ! neuroblast NB5-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001499 name: 5-2Icp (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron derived from the NB5-2 lineage and whose projections form a prominent bundle that runs through the posterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001496 ! 5-2I (Drosophila) relationship: develops_from FBbt:00001376 ! neuroblast NB5-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001500 name: 5-3I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB5-3 lineage." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001501 name: 5-3Ica (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron of the NB5-3 lineage that projects through the anterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001500 ! 5-3I (Drosophila) relationship: develops_from FBbt:00001390 ! neuroblast NB5-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001502 name: 5-3Icp (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron of the NB5-3 lineage that whose projections form a bundle that projects through the posterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001500 ! 5-3I (Drosophila) relationship: develops_from FBbt:00001390 ! neuroblast NB5-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001503 name: 5-6I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001504 name: 5-6Ica of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001503 ! 5-6I (Drosophila) relationship: develops_from FBbt:00001378 ! neuroblast NB5-6 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001505 name: 5-6Icp of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001503 ! 5-6I (Drosophila) relationship: develops_from FBbt:00001378 ! neuroblast NB5-6 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001506 name: 5-6Ii of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001503 ! 5-6I (Drosophila) relationship: develops_from FBbt:00001378 ! neuroblast NB5-6 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001507 name: 5-6Ica of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001503 ! 5-6I (Drosophila) relationship: develops_from FBbt:00001379 ! neuroblast NB5-6 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001508 name: 5-6Icp of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001503 ! 5-6I (Drosophila) relationship: develops_from FBbt:00001379 ! neuroblast NB5-6 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001509 name: 5-6Ii of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001503 ! 5-6I (Drosophila) relationship: develops_from FBbt:00001379 ! neuroblast NB5-6 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001510 name: 6-1I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from neuroblast the NB6-1 lineage." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001511 name: 6-1Ii (Drosophila) namespace: fly_anatomy.ontology def: "Ipsilateral posterior projecting interneuron originating from 6-1I." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001510 ! 6-1I (Drosophila) relationship: develops_from FBbt:00001398 ! neuroblast NB6-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001512 name: 6-1Ic (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from 6-1I that projects through the posterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001510 ! 6-1I (Drosophila) relationship: develops_from FBbt:00001398 ! neuroblast NB6-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001513 name: 6-2I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB6-2 lineage." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001514 name: 6-2Ii (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB6-2 lineage whose projections form a small, ipsilaterally projecting bundle that projects anteriorly along the lateral border of the ipsilateral connective." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001513 ! 6-2I (Drosophila) relationship: develops_from FBbt:00001391 ! neuroblast NB6-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001515 name: 6-2Icp1 (Drosophila) namespace: fly_anatomy.ontology def: "Contralaterally projecting interneuron originating from 6-2I. It is distinguished from 6-2cp2 by crossing the posterior commissure along the anterior margin." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001513 ! 6-2I (Drosophila) relationship: develops_from FBbt:00001391 ! neuroblast NB6-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001516 name: 6-2Icp2 (Drosophila) namespace: fly_anatomy.ontology def: "Contralaterally projecting interneuron originating from 6-2I. It is distinguished from 6-2cp1 by crossing the posterior commissure along the posterior margin then bending posteriorly in the contralateral connective." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001513 ! 6-2I (Drosophila) relationship: develops_from FBbt:00001391 ! neuroblast NB6-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001517 name: 6-4I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001518 name: 6-4Ic (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001517 ! 6-4I (Drosophila) relationship: develops_from FBbt:00001400 ! neuroblast NB6-4 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001519 name: 6-4Ii (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001517 ! 6-4I (Drosophila) relationship: develops_from FBbt:00001400 ! neuroblast NB6-4 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001520 name: 7-1I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from the neuroblast NB7-1 lineage." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001521 name: 7-1Ica (Drosophila) namespace: fly_anatomy.ontology def: "Contralaterally projecting interneuron originating from 7-1I. It projects through the middle of the anterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001520 ! 7-1I (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001522 name: 7-1Icp (Drosophila) namespace: fly_anatomy.ontology def: "Contralaterally projecting interneuron originating from 7-1I. It projects through the posterior border of the posterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001520 ! 7-1I (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001523 name: 7-2I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron originating from neuroblast the NB7-2 lineage." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001524 name: 7-2Ii (Drosophila) namespace: fly_anatomy.ontology def: "Ipsilateral posterior projecting interneuron originating from 7-2I." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001523 ! 7-2I (Drosophila) relationship: develops_from FBbt:00001392 ! neuroblast NB7-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001525 name: 7-2Ic (Drosophila) namespace: fly_anatomy.ontology def: "Contralaterally projecting interneuron that projects through the posterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: FBbt:00001523 ! 7-2I (Drosophila) relationship: develops_from FBbt:00001392 ! neuroblast NB7-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001526 name: 7-3I (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron of the NB7-3 lineage. The projections of these interneurons form a bundle that projects across the anterior border of the posterior commissure." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001426 ! neuroblast NB7-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001527 name: 7-4I (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001528 name: 7-4Ic (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001527 ! 7-4I (Drosophila) relationship: develops_from FBbt:00001381 ! neuroblast NB7-4 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001529 name: 7-4Ii (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001527 ! 7-4I (Drosophila) relationship: develops_from FBbt:00001381 ! neuroblast NB7-4 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001530 name: TB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Developing from neuroblast NB1-2, the TB neuron is located apart from the other cells of this lineage. Axogenesis begins early, at embryonic stage 13, and has a distinctive 'bent' morphology." [FlyBase:FBrf0090460] comment: See Bossing et al., (1996) for a diagram. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001384 ! neuroblast NB1-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001531 name: y interneuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0098344] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001532 name: yIi (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001531 ! y interneuron (Drosophila) [Term] id: FBbt:00001533 name: yIc (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001531 ! y interneuron (Drosophila) [Term] id: FBbt:00001534 name: 1-1Ms (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from the thoracic neuroblast NB1-1. The axon terminates amongst ventrolateral muscles without a detectable end-plate (Bossing et al., 1996)." [FlyBase:FBrf0090460] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001372 ! neuroblast NB1-1 of thorax (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001535 name: 1-3M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001536 name: 1-3Mar (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001535 ! 1-3M (Drosophila) relationship: develops_from FBbt:00001404 ! neuroblast NB1-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001537 name: 1-3Ms (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001535 ! 1-3M (Drosophila) relationship: develops_from FBbt:00001404 ! neuroblast NB1-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001538 name: 2-2M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001539 name: 2-2M of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001538 ! 2-2M (Drosophila) relationship: develops_from FBbt:00001386 ! neuroblast NB2-2 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001540 name: 2-2M of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001538 ! 2-2M (Drosophila) relationship: develops_from FBbt:00001387 ! neuroblast NB2-2 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001541 name: 2-4M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001542 name: 2-4M of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001541 ! 2-4M (Drosophila) relationship: develops_from FBbt:00001412 ! neuroblast NB2-4 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001543 name: 2-4M1+2 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001541 ! 2-4M (Drosophila) relationship: develops_from FBbt:00001412 ! neuroblast NB2-4 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001544 name: 2-4M of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001541 ! 2-4M (Drosophila) relationship: develops_from FBbt:00001413 ! neuroblast NB2-4 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001545 name: 2-4M1+2 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001541 ! 2-4M (Drosophila) relationship: develops_from FBbt:00001413 ! neuroblast NB2-4 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001546 name: 2-5M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001374 ! neuroblast NB2-5 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001547 name: 3-2M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001548 name: 3-2Ms (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001547 ! 3-2M (Drosophila) relationship: develops_from FBbt:00001388 ! neuroblast NB3-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001549 name: 3-2Mar (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001547 ! 3-2M (Drosophila) relationship: develops_from FBbt:00001388 ! neuroblast NB3-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001550 name: 4-2Mar (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron of the NB4-2 lineage that projects ipsilaterally and posteriorly through the anterior root of the intersegmental nerve and innervates muscles of the ventral external oblique group." [FlyBase:FBrf0083837, FlyBase:FBrf0090460] subset: cur ! cur synonym: "CoR" EXACT [FlyBase:FBrf0083837] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001389 ! neuroblast NB4-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001551 name: 4-3M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001423 ! neuroblast NB4-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001552 name: 5-2M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001376 ! neuroblast NB5-2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001553 name: 5-4M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001554 name: 5-4M of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001553 ! 5-4M (Drosophila) relationship: develops_from FBbt:00001417 ! neuroblast NB5-4 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001555 name: 5-4M1 of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001553 ! 5-4M (Drosophila) relationship: develops_from FBbt:00001417 ! neuroblast NB5-4 of thorax (Drosophila) relationship: part_of FBbt:00007485 ! nervous system of embryonic/larval thorax (Drosophila) [Term] id: FBbt:00001556 name: 5-4M of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001553 ! 5-4M (Drosophila) relationship: develops_from FBbt:00001418 ! neuroblast NB5-4 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001557 name: 5-4M1 of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001553 ! 5-4M (Drosophila) relationship: develops_from FBbt:00001418 ! neuroblast NB5-4 of abdomen (Drosophila) relationship: part_of FBbt:00007486 ! nervous system of embryonic/larval abdomen (Drosophila) [Term] id: FBbt:00001558 name: 7-1M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001559 name: 7-3M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001426 ! neuroblast NB7-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001560 name: yM (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0098344] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001561 name: ipsisegmental neuron namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005106 ! neuron comment: made obsolete because never used in curation and manual assertion of this as a general class (for neurons that don't cross the midline) is impractical. subset: cur ! cur [Term] id: FBbt:00001562 name: lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0054608] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001563 name: ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0054608] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001564 name: U neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from the neuroblast NB7-1 lineage. The U neurons collectively innervate the following muscles: 1, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 15, 16, 17, 19, and 20." [FlyBase:FBrf0064795, FlyBase:FBrf0112030, FlyBase:FBrf0138252, FlyBase:FBrf0190540, http://www.neuro.uoregon.edu/doelab/lineages/texts/71%20description.html] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "U/CQ neuron" EXACT [FlyBase:FBrf0167497] is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) [Term] id: FBbt:00001565 name: U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from the first ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0190540] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001564 ! U neuron (Drosophila) [Term] id: FBbt:00001566 name: U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from the second ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0190540] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001564 ! U neuron (Drosophila) [Term] id: FBbt:00001567 name: U3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from the third ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0190540] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001564 ! U neuron (Drosophila) [Term] id: FBbt:00001568 name: Usib neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sibling neuron to the U neuron deriving from a ganglion mother cell. Differentiation from the ganglion mother cell initially produces eve (FBgn0000606) positive cells. Whereas the Usib neuron remains eve positive, the Usib cell rapidly downregulates eve." [FlyBase:FBrf0102831, FlyBase:FBrf0162056] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005123 ! motor neuron (Drosophila) [Term] id: FBbt:00001569 name: U1sib neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sibling neuron to the U1 neuron developing from the first ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0102831, FlyBase:FBrf0162056] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001568 ! Usib neuron (Drosophila) [Term] id: FBbt:00001570 name: U2sib neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sibling neuron to the U2 neuron developing from the second ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0102831, FlyBase:FBrf0162056] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001568 ! Usib neuron (Drosophila) [Term] id: FBbt:00001571 name: U3sib neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sibling neuron to the U3 neuron developing from the third ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0102831, FlyBase:FBrf0162056] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001568 ! Usib neuron (Drosophila) [Term] id: FBbt:00001572 name: EL neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron developing from the neuroblast lineage NB3-3 (Schmidt et al., 1997)." [FlyBase:FBrf0086454, FlyBase:FBrf0098344] comment: EL neurons are characterized by expression of eve (FBgn0000606). Higashijima et al., (1996) also point out that some, if not all, of the EL neurons belong to the EG neurons. subset: cur ! cur synonym: "ELC" EXACT [FlyBase:FBrf0151916] synonym: "Eve+ lateral neuron" EXACT [FlyBase:FBrf0102831] synonym: "eve-expressing neuron" RELATED [] synonym: "eve-lateral neuron" EXACT [FlyBase:FBrf0191262] synonym: "eve-positive lateral interneuron" EXACT [FlyBase:FBrf0206246] is_a: FBbt:00001579 ! EG neuron (Drosophila) relationship: develops_from FBbt:00001422 ! neuroblast NB3-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001573 name: EN neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001574 name: DL neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001575 name: VL neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001576 name: NH neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001577 name: PL neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001578 name: PI neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001579 name: EG neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that is part of a cluster of 10-12 eagle (FBgn0000560) expressing neurons deriving from multiple neuroblasts. Axons extend across the midline via the anterior commissure." [FlyBase:FBrf0086454, FlyBase:FBrf0200520] comment: Higashijima et al., (1996) point out that some, if not all, of the EL neurons belong to the EG neurons, as based on enhancer trap and immunolabelling studies. subset: cur ! cur synonym: "eg-expressing neuron" RELATED [] is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00001580 name: PM neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0086454] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001581 name: PQ neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0086454] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001582 name: EW neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron of embryonic/larval abdominal segments from the 7-3 lineage." [FlyBase:FBrf0086454] subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001426 ! neuroblast NB7-3 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00001583 name: EW1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic interneuron of embryonic/larval abdominal segment. It is born from the first-born ganglion mother cell of the 7-3 lineage (GMC 7-3a)." [FlyBase:FBrf0094581, FlyBase:FBrf0100717, FlyBase:FBrf0138252] subset: cur ! cur is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00001582 ! EW neuron (Drosophila) [Term] id: FBbt:00001584 name: EW2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic interneuron of embryonic/larval abdominal segment. It is born from the second-born ganglion mother cell of the 7-3 lineage (GMC 7-3b)." [FlyBase:FBrf0094581, FlyBase:FBrf0100717, FlyBase:FBrf0138252] subset: cur ! cur is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00001582 ! EW neuron (Drosophila) [Term] id: FBbt:00001585 name: EW3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Peptidergic interneuron of embryonic/larval abdominal segment. It differentiates directly from the third GMC in the 7-3 lineage (GMC 7-3c)." [FlyBase:FBrf0100717, FlyBase:FBrf0138252, FlyBase:FBrf0144815] comment: Designated as peptidergic on the basis of Corazonin expression (Novotny et al., 2002). subset: cur ! cur is_a: FBbt:00001582 ! EW neuron (Drosophila) is_a: FBbt:00004101 ! peptidergic neuron (Drosophila) [Term] id: FBbt:00001586 name: GW neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron of embryonic and larval abdominal segment. It is born from the first ganglion mother cell in the 7-3 lineage (GMC 7-1a)." [FlyBase:FBrf0086454, FlyBase:FBrf0138252] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001587 name: IP neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell body is located in one of 2 (bilateral) clusters in the brain: in the larva these clusters occupy the ventral cortex (rind) adjacent to the esophagus aperture; in the adult they are located in the cortex of the inferior-medial protocerebrum." [FlyBase:FBrf0048551] subset: cur ! cur is_a: CL:0000850 ! serotonergic neuron relationship: part_of UBERON:0000955 ! brain [Term] id: FBbt:00001588 name: LP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell body is located in one of 2 (bilateral) clusters: in the larva these clusters occupy a mid-lateral position at the optic lobe margin and have axons that join a midline-crossing tract; in the adult they are located in the cortex of the lateral protocerebrum, anterior to the optic tract and project their axons centrally into the midbrain." [FlyBase:FBrf0048551] subset: cur ! cur synonym: "lamina cluster 1" RELATED [] is_a: CL:0000850 ! serotonergic neuron relationship: part_of UBERON:0000955 ! brain [Term] id: FBbt:00001589 name: Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0054490] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001590 name: V neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuron that is one of the two anterior most VUM neurons." [FlyBase:FBrf0053395] subset: cur ! cur synonym: "V cell" EXACT [FlyBase:FBrf0053395] is_a: FBbt:00001592 ! VUM neuron (Drosophila) [Term] id: FBbt:00001591 name: M neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0054490] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001592 name: VUM neuron (Drosophila) namespace: fly_anatomy.ontology def: "The cell body of the VUM neuron is located medially in the ventral and posterior cortex region of the neuromere. Fibers from VUM neurons run tightly fasciculated dorsally towards the neuropil where they separate to form a motorneuronal projection bifurcating in the dorsal part of the anterior commissure, and an interneuronal projection bifurcating in the ventral part of the posterior commissure (Bossing and Technau, 1994). There are six VUM neurons per neuromere." [FlyBase:FBrf0041721, FlyBase:FBrf0053395, FlyBase:FBrf0072659] subset: cur ! cur synonym: "VUM-cluster neurons" EXACT [FlyBrain_NDB:10472] synonym: "ventral unpaired cell" RELATED [] synonym: "ventral unpaired median neuron" EXACT [FlyBase:FBrf0041721, FlyBase:FBrf0072659] xref: FlyBrain_NDB:10472 is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: develops_from FBbt:00001428 ! VUM precursor (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001593 name: VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001592 ! VUM neuron (Drosophila) [Term] id: FBbt:00001594 name: VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001592 ! VUM neuron (Drosophila) [Term] id: FBbt:00001595 name: VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001592 ! VUM neuron (Drosophila) [Term] id: FBbt:00001596 name: VUM4 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001592 ! VUM neuron (Drosophila) [Term] id: FBbt:00001597 name: VUM5 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001592 ! VUM neuron (Drosophila) [Term] id: FBbt:00001598 name: VUM6 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001592 ! VUM neuron (Drosophila) [Term] id: FBbt:00001599 name: MP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron residing slightly anterior and ventral to the posterior commissure in the corner formed by the connectives and the posterior commissure (Bossing and Technau, 1994). Its ipsilateral projection bifurcates in an anterior and posterior branch (which spans up to three neuromeres) that run within the medial sector of the connective." [FlyBase:FBrf0072659] subset: cur ! cur synonym: "Midline precursor 1 cell" EXACT [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001427 ! MP1 precursor (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001600 name: MP1a neuron (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most of the two bilateral MP1 neurons found at the midline, anterior to the posterior commissure (Schmid et al., 1999)." [FlyBase:FBrf0049007, FlyBase:FBrf0074503, FlyBase:FBrf0112030] comment: Doe et al., (1988) distinguish the MP1-progeny by referring to them as left or right. However, as this changes the identity of the cell depending on whether the right or left side of the animal is observed, we have adopted a nomenclature based on reference to the midline. subset: cur ! cur synonym: "MP1(l)" RELATED [] is_a: FBbt:00001599 ! MP1 neuron (Drosophila) [Term] id: FBbt:00001601 name: MP1b neuron (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most of the two bilateral MP1 neurons found at the midline, anterior to the posterior commissure (Schmid et al., 1999)." [FlyBase:FBrf0049007, FlyBase:FBrf0112030] comment: Doe et al., (1988) distinguish the MP1-progeny by referring to them as left or right. However, as this changes the identity of the cell depending on whether the right or left side of the animal is observed, we have adopted a nomenclature based on reference to the midline. subset: cur ! cur is_a: FBbt:00001599 ! MP1 neuron (Drosophila) [Term] id: FBbt:00001602 name: dMP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Insulinergic intersegmental interneuron that is one of two cells differentiating from neuroblast MP2. It projects posteriorly in a medial fascicle of the connective. Axons from dMP2 neurons innervate the hindgut, forming two fascicles that extend on opposite sides of the hindgut (Miguel-Aliaga et al., 2008). By the adult stage, arbors have formed that innervate the anterior intestines and the rectum. dMP2 neurons perform a pioneer function in embryos then undergo apoptosis in all but segments A1-A9 (Miguel-Aliaga et al., 2008)." [FlyBase:FBrf0112030, FlyBase:FBrf0204880] subset: cur ! cur synonym: "MP2d" RELATED [] is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001382 ! neuroblast MP2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001603 name: vMP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental interneuron that is one of two cells differentiating from neuroblast MP2. It projects anteriorly in a medial fascicle of the connective." [FlyBase:FBrf0112030] subset: cur ! cur synonym: "MP2v" RELATED [] is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001382 ! neuroblast MP2 (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001604 name: UMI interneuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "unpaired median interneuron" RELATED [] is_a: CL:0000099 ! interneuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: develops_from FBbt:00001432 ! UMI precursor (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001605 name: embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Cluster of typically 2-6 embryonic neuronal somata prior to axon outgrowth. Neurons of the founder clusters then extend axons that grow along the surface of the founder cluster and form a simple system of pioneer tracts for each of the components of the neuropil." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001606 name: supraesophageal embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster located in the supraesophageal ganglion." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur is_a: FBbt:00001605 ! embryonic fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001062 ! embryonic supraesophageal neuromere (Drosophila) [Term] id: FBbt:00001607 name: protocerebral embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster more dorsally located than the D/T founder cluster, and belongs to the protocerebrum." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur is_a: FBbt:00001606 ! supraesophageal embryonic fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001063 ! embryonic protocerebral neuromere (Drosophila) [Term] id: FBbt:00001608 name: P1 fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Fiber tract founder cluster located in the protocerebrum between the D/T and P3m founder clusters. Along with these clusters, fibers from the P1 fiber tract founder cluster pioneer the cervical connective." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001609 name: P2l fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Fiber tract founder cluster located at the junction between the protocerebrum and the deuterocerebrum. Along with the P2m founder cluster, fibers from the P2l form a transverse track that pioneers the supraesophageal commissure. This cluster derives from the Dc1 or the Dc2 lineage." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001610 name: P2m fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Fiber tract founder cluster located in the protocerebrum, adjacent to the P2m founder cluster. Along with the P2l founder cluster, fibers from the P2m form a transverse track that pioneers the supraesophageal commissure." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001611 name: P3l fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Fiber tract founder cluster located laterally adjacent to the fiber tract founder cluster P3m in the protocerebrum." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001612 name: P3m fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Fiber tract founder cluster located dorsally in the protocerebrum. Along with founder clusters D/T and P1, fibers from the P3m fiber tract founder cluster pioneer the cervical connective." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001613 name: P4l fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Fiber tract founder cluster located in the protocerebrum posterior to founder cluster P3m. Along with founder clusters P5l and P5m, fibers developing from the P4l fiber tract founder cluster pioneer a lateral component of the protocerebral connective." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001614 name: P4m fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "The P4m fiber tract founder cluster i a relatively large group of neurons situated posterior to the P3m founder cluster in the medial cortex of the supraesophageal ganglion. Fibers originating from this cluster pioneer a medial component of the protocerebral connective." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001615 name: P5l fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "The P5l fiber tract founder cluster is located in the posterior-ventral region of the protocerebrum, adjacent to the optic lobes. Along with founder clusters P4l and P5m, fibers developing from the P5l fiber tract founder cluster pioneer a lateral component of the protocerebral connective." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. subset: cur ! cur is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001616 name: P5m fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "The P5m fiber tract founder cluster is located in the posterior-ventral region of the protocerebrum, adjacent to the optic lobes. Along with founder clusters P4l and P5l, fibers developing from the P5m fiber tract founder cluster pioneer a lateral component of the protocerebral connective." [FlyBase:FBrf0105282] comment: See Nassif et al., (1998) for a schematic view of founder cluster location. Nassif et al., (1998) claim that double immunolabelling with Mab22C10 and Fas2 reveals that the P5m fiber tract founder cluster correspond to the 'optic lobe pioneers'. subset: cur ! cur synonym: "optic lobe pioneer neuron" RELATED [] is_a: FBbt:00001607 ! protocerebral embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001617 name: deutero/tritocerebral embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster that overlaps with parts of the deuterocerebrum as well as of the tritocerebral neurectoderm. It is located ventral to the protocerebral embryonic fiber tract founder cluster." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur synonym: "D/T cluster" EXACT [FlyBase:FBrf0105282] is_a: FBbt:00001606 ! supraesophageal embryonic fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001064 ! embryonic deuterocerebral neuromere (Drosophila) relationship: part_of FBbt:00001065 ! embryonic tritocerebral neuromere (Drosophila) [Term] id: FBbt:00001618 name: subesophageal embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster located in the subesophageal ganglion." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur is_a: FBbt:00001605 ! embryonic fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001083 ! embryonic subesophageal neuromere (Drosophila) [Term] id: FBbt:00001619 name: labial/prothoracic embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster which is located at the boundary of the labial/prothoracic neuromeres." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur is_a: FBbt:00001618 ! subesophageal embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001620 name: maxillary/labial embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster which is located at the boundary of the maxillary/labial neuromeres." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur is_a: FBbt:00001618 ! subesophageal embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001621 name: mandibular/maxillary embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster which is located at the boundary of the mandibular/maxillary neuromeres." [FlyBase:FBrf0105282] comment: Nassif et al., (1998) use Fas2 (FBgn0000635) immunolabelling to visualize the founder clusters. subset: cur ! cur is_a: FBbt:00001618 ! subesophageal embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001622 name: thoracic-abdominal embryonic fiber tract founder cluster (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic fiber tract founder cluster located in the thoracic and abdominal neuromeres." [FlyBase:FBrf0105282] subset: cur ! cur is_a: FBbt:00001605 ! embryonic fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001087 ! embryonic ventral neuromere (Drosophila) [Term] id: FBbt:00001623 name: embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001018 ! axon tract relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001624 name: supraesophageal embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology def: "Large tract of neurons crossing the midline at the boundary of the deuterocerebrum and pars intercerebralis. It is pioneered by fibers from fiber tract founder clusters P2l and P2m." [FlyBase:FBrf0105282] subset: cur ! cur synonym: "supraesophageal embryonic fiber commissure" EXACT [FlyBase:FBrf0105282] synonym: "transverse component of embryonic brain neuropil" EXACT [FlyBase:FBrf0105282] is_a: FBbt:00001623 ! embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001606 ! supraesophageal embryonic fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001062 ! embryonic supraesophageal neuromere (Drosophila) [Term] id: FBbt:00001625 name: protocerebral embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001624 ! supraesophageal embryonic fiber tract (Drosophila) relationship: part_of FBbt:00001063 ! embryonic protocerebral neuromere (Drosophila) [Term] id: FBbt:00001626 name: lateral cervical tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001625 ! protocerebral embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001612 ! P3m fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00001627 name: posterior cervical tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001625 ! protocerebral embryonic fiber tract (Drosophila) [Term] id: FBbt:00001628 name: medial protocerebral tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001625 ! protocerebral embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001614 ! P4m fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001629 name: lateral protocerebral tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001625 ! protocerebral embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001613 ! P4l fiber tract founder cluster (Drosophila) relationship: develops_from FBbt:00001615 ! P5l fiber tract founder cluster (Drosophila) relationship: develops_from FBbt:00001616 ! P5m fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001630 name: deutero/tritocerebral embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001624 ! supraesophageal embryonic fiber tract (Drosophila) [Term] id: FBbt:00001631 name: medial cervical tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract of the larval brain which is connected to (among other compartments) the centro-anterior synaptic neuropil domain (CA) and the dorso-anterior (DA) and dorso-posterior (DP) compartments." [FlyBase:FBrf0155900] subset: cur ! cur synonym: "MCT" EXACT [] is_a: FBbt:00001630 ! deutero/tritocerebral embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001617 ! deutero/tritocerebral embryonic fiber tract founder cluster (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00001632 name: supraesophageal commissural pioneer tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001624 ! supraesophageal embryonic fiber tract (Drosophila) [Term] id: FBbt:00001633 name: anterior ventral commissural pioneer tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001632 ! supraesophageal commissural pioneer tract (Drosophila) [Term] id: FBbt:00001634 name: posterior ventral commissural pioneer tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001632 ! supraesophageal commissural pioneer tract (Drosophila) [Term] id: FBbt:00001635 name: antenno-cerebral tract (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007123 def: "." [FlyBase:FBrf0051437, FlyBase:FBrf0155899, FlyBase:FBrf0155900] subset: cur ! cur synonym: "ACT" EXACT [] synonym: "antennoglomerular tract" RELATED [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) [Term] id: FBbt:00001636 name: central anastomosing tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "CAT" RELATED [] is_a: FBbt:00001632 ! supraesophageal commissural pioneer tract (Drosophila) [Term] id: FBbt:00001637 name: subesophageal embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology def: "A massive bundle of neurons crossing the midline at the boundary between subesophageal and supraesophageal ganglia. It carries axons of mainly tritocerebral origin although some axons of neurons located in the mandibular neuromere also contribute to this commissure." [FlyBase:FBrf0105282] subset: cur ! cur synonym: "subesophageal commissure" EXACT [FlyBase:FBrf0105282] is_a: FBbt:00001623 ! embryonic fiber tract (Drosophila) relationship: part_of FBbt:00001083 ! embryonic subesophageal neuromere (Drosophila) [Term] id: FBbt:00001638 name: labial/prothoracic embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001637 ! subesophageal embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001619 ! labial/prothoracic embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001639 name: maxillary/labial embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001637 ! subesophageal embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001620 ! maxillary/labial embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001640 name: mandibular/maxillary embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001637 ! subesophageal embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001621 ! mandibular/maxillary embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001641 name: thoracic-abdominal embryonic fiber tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001623 ! embryonic fiber tract (Drosophila) relationship: part_of FBbt:00001087 ! embryonic ventral neuromere (Drosophila) relationship: part_of FBbt:00005387 ! embryonic nervous system of thorax (Drosophila) relationship: part_of FBbt:00005388 ! embryonic nervous system of abdomen (Drosophila) [Term] id: FBbt:00001642 name: thoracic-abdominal pioneer tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001641 ! thoracic-abdominal embryonic fiber tract (Drosophila) relationship: develops_from FBbt:00001605 ! embryonic fiber tract founder cluster (Drosophila) [Term] id: FBbt:00001643 name: vMP2 tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract of the ventral nerve cord pioneered by vMP2 which projects anteriorly in a medial fascicle of the connective, and extends across segment boundaries (Schmid et al., 1999; Bossing et al., 1996)." [FlyBase:FBrf0090460, FlyBase:FBrf0112030] subset: cur ! cur synonym: "ventral MP2" EXACT [FlyBase:FBrf0090460] is_a: FBbt:00001642 ! thoracic-abdominal pioneer tract (Drosophila) [Term] id: FBbt:00001644 name: MP1 tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract pioneered by the MP1 neuron in the ventral nerve cord. The MP1 neurons send a bifurcating axon anterior and posterior along two or three segments in a medial fascicle of the longitudinal connectives (Schmid et al., 1999)." [FlyBase:FBrf0049007, FlyBase:FBrf0074503, FlyBase:FBrf0112030] subset: cur ! cur is_a: FBbt:00001642 ! thoracic-abdominal pioneer tract (Drosophila) [Term] id: FBbt:00001645 name: dorsal-medial tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001642 ! thoracic-abdominal pioneer tract (Drosophila) relationship: develops_from FBbt:00001643 ! vMP2 tract (Drosophila) [Term] id: FBbt:00001646 name: ventro-medial tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001642 ! thoracic-abdominal pioneer tract (Drosophila) relationship: develops_from FBbt:00001644 ! MP1 tract (Drosophila) [Term] id: FBbt:00001647 name: lateral tract (Drosophila) namespace: fly_anatomy.ontology def: "Lateral most of the tracts forming the longitudinal connectives of the ventral nerve cord. It is first observed in late stage 16 embryos (Nassif et al., 1998)." [FlyBase:FBrf0105282] subset: cur ! cur is_a: FBbt:00001642 ! thoracic-abdominal pioneer tract (Drosophila) [Term] id: FBbt:00001648 name: embryonic imaginal precursor (Drosophila) namespace: fly_anatomy.ontology def: "Embryonic structure that will proliferate during larval development into a larval imaginal disc. During early embryogenesis the precursor is part of the epithelial sheet before segregating from the epithelial sheet by late embryogenesis (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005023 ! imaginal precursor (Drosophila) is_a: UBERON:0002050 ! embryonic structure [Term] id: FBbt:00001649 name: imaginal disc primordium (Drosophila) namespace: fly_anatomy.ontology def: "Population of contiguous, morphologically distinct cells that will form an imaginal disc." [FBC:SPR] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "imaginal disc specific anlage" RELATED [] is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00001650 name: labial disc primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium that will form the labial disc." [FBC:SPR] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "labial disc specific anlage" RELATED [] is_a: FBbt:00001649 ! imaginal disc primordium (Drosophila) relationship: part_of FBbt:00000165 ! embryonic labial segment (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00001651 name: clypeo-labral disc specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001652 name: eye-antennal disc primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium from which the eye-antennal disc develops." [FBC:SPR] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "eye-antennal disc specific anlage" RELATED [] is_a: FBbt:00001649 ! imaginal disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000160 ! embryonic antennal segment (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00001653 name: dorsal thoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal thoracic disc specific anlage" RELATED [] is_a: FBbt:00001649 ! imaginal disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000167 ! embryonic thoracic segment (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00001654 name: dorsal prothoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal prothoracic disc specific anlage" RELATED [] is_a: FBbt:00001653 ! dorsal thoracic disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000168 ! embryonic prothoracic segment (Drosophila) [Term] id: FBbt:00001655 name: dorsal mesothoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal mesothoracic disc specific anlage" RELATED [] is_a: FBbt:00001653 ! dorsal thoracic disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000169 ! embryonic mesothoracic segment (Drosophila) [Term] id: FBbt:00001656 name: dorsal metathoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal metathoracic disc specific anlage" RELATED [] is_a: FBbt:00001653 ! dorsal thoracic disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000170 ! embryonic metathoracic segment (Drosophila) [Term] id: FBbt:00001657 name: ventral thoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ventral thoracic disc specific anlage" RELATED [] is_a: FBbt:00001649 ! imaginal disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000167 ! embryonic thoracic segment (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00001658 name: ventral prothoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ventral prothoracic disc specific anlage" RELATED [] is_a: FBbt:00001657 ! ventral thoracic disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000168 ! embryonic prothoracic segment (Drosophila) [Term] id: FBbt:00001659 name: ventral mesothoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ventral mesothoracic disc specific anlage" RELATED [] is_a: FBbt:00001657 ! ventral thoracic disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000169 ! embryonic mesothoracic segment (Drosophila) [Term] id: FBbt:00001660 name: ventral metathoracic disc primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ventral metathoracic disc specific anlage" RELATED [] is_a: FBbt:00001657 ! ventral thoracic disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000170 ! embryonic metathoracic segment (Drosophila) [Term] id: FBbt:00001661 name: genital disc primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium from which the genital disc develops." [FBC:SPR] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "genital disc specific anlage" RELATED [] is_a: FBbt:00001649 ! imaginal disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00001662 name: male genital disc primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium from which the male genital disc derives." [FBC:SPR] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "male genital disc specific anlage" RELATED [] is_a: FBbt:00001661 ! genital disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000181 ! embryonic abdominal segment 9 (Drosophila) [Term] id: FBbt:00001663 name: female genital disc primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium from which the female genital disc derives." [FBC:SPR] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "female genital disc specific anlage" RELATED [] is_a: FBbt:00001661 ! genital disc primordium (Drosophila) relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00000180 ! embryonic abdominal segment 8 (Drosophila) [Term] id: FBbt:00001664 name: embryonic/larval circulatory system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005677 def: "Tubular system of the embryo/larva through which hemolymph flows." [FlyBase:FBrf0031012] subset: cur ! cur synonym: "larval circulatory system" EXACT [] is_a: UBERON:0001009 ! circulatory system relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001665 name: dorsal vessel primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium that makes the inner, contractile layer of the embryonic/larval dorsal vessel. This primordium originates in the mesodermal crest on each side of the embryo. Its component cells (embryonic cardioblasts) become distinct by stage 14. The dorsal vessel is formed by fusion of left and right primordia during, and immediately following, dorsal closure." [FlyBase:FBrf0089570, FlyBase:FBrf0151925] subset: cur ! cur synonym: "dorsal vessel specific anlage" RELATED [] is_a: FBbt:00005461 ! circulatory system primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005541 ! cardiogenic mesoderm (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00001667 name: embryonic/larval pericardial cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005679 def: "Cell type forming the outer layer of the dorsal vessel in the embryonic/larval abdomen. These cells sequester macromolecules from the hemolymph." [FlyBase:FBrf0151925, PMID:18355807] subset: cur ! cur synonym: "larval pericardial cell" EXACT [] synonym: "nephrocyte" RELATED [PMID:18971929] is_a: CL:0000474 ! pericardial cell relationship: develops_from FBbt:00005466 ! pericardial cell primordium (Drosophila) relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00001668 name: embryonic/larval lymph gland (Drosophila) namespace: fly_anatomy.ontology def: "Hematopoietic organ of the larva, located along the dorsal vessel, behind the brain." [FlyBase:FBrf0031001, FlyBase:FBrf0032406, FlyBase:FBrf0074444] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "embryonic/larval hematopoietic organ" EXACT [FlyBase:FBrf0074444] synonym: "hematopoietic organ" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from FBbt:00000132 ! mesodermal crest of segment T3 (Drosophila) relationship: develops_from FBbt:00005467 ! lymph gland primordium (Drosophila) relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00001669 name: anterior lymph gland pair (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most and largest of the 3-6 lobe pairs of the third instar embryonic/larval lymph gland. These lobes are bulbous." [FlyBase:FBrf0074444, FlyBase:FBrf0208762] subset: cur ! cur synonym: "primary lobe" RELATED [FlyBase:FBrf0208762] synonym: "primary lobe of embryonic/larval lymph gland" EXACT [FlyBase:FBrf0208762] is_a: FBbt:00001668 ! embryonic/larval lymph gland (Drosophila) [Term] id: FBbt:00001670 name: middle lymph gland pair (Drosophila) namespace: fly_anatomy.ontology def: "Second most anterior pair of lobes of the third instar larval lymph gland. They are bulbous like the anterior lobes, but smaller than them." [FlyBase:FBrf0074444, FlyBase:FBrf0208762] subset: cur ! cur synonym: "secondary lobe" RELATED [FlyBase:FBrf0208762] synonym: "secondary lobe of embryonic/larval lymph gland" EXACT [FlyBase:FBrf0208762] is_a: FBbt:00001668 ! embryonic/larval lymph gland (Drosophila) [Term] id: FBbt:00001671 name: posterior lymph gland pair (Drosophila) namespace: fly_anatomy.ontology def: "Pair of lymph gland lobes posterior to the middle lobes. Unlike the more anterior lobes, these are small and elongate. There may be multiple pairs of these lobes." [FlyBase:FBrf0074444, FlyBase:FBrf0208762] subset: cur ! cur synonym: "tertiary lobe" RELATED [FlyBase:FBrf0208762] is_a: FBbt:00001668 ! embryonic/larval lymph gland (Drosophila) [Term] id: FBbt:00001672 name: alary cell (Drosophila) namespace: fly_anatomy.ontology def: "Twist expressing cell associated with the alary muscles in late stage embryos (present by late stage 15, early stage 16)." [FlyBase:FBrf0053819] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00001673 name: embryonic/larval dorsal vessel (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005681 def: "A contractile tube that extends from immediately behind the posterior commissure of T1 to the arthrodial membrane of A7, into which it inserts via two caudally directed muscles which connect to lateral apodemes in A8. Throughout its length, its lumen is enclosed by just two cardial cells. The cardial cell layer is only a single-cell thick, and is surrounded by a single-cell thick layer of pericardial cells, except in the posterior thorax, where it is surrounded by lymph gland in the anterior thorax where it passes through the ring gland. The whole tube is attached to the anterior of each abdominal segment boundary by alary muscles." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval dorsal vessel" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00001674 name: embryonic/larval aorta (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005683 def: "The embryonic/larval dorsal vessel from its anterior tip to the middle of segment 4, where it broadens to become the heart." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval aorta" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00007323 ! embryonic aortic cardioblast (Drosophila) relationship: part_of FBbt:00001673 ! embryonic/larval dorsal vessel (Drosophila) [Term] id: FBbt:00001675 name: embryonic/larval heart (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005685 def: "The embryonic/larval dorsal vessel from the middle of A4 to its posterior tip. It is broader and has a larger lumen then the aorta." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval heart" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00007322 ! embryonic heart cardioblast (Drosophila) relationship: part_of FBbt:00001673 ! embryonic/larval dorsal vessel (Drosophila) [Term] id: FBbt:00001676 name: embryonic/larval cardiovascular gland namespace: fly_anatomy.ontology alt_id: FBbt:00005687 is_obsolete: true consider: FBbt:00001668 ! embryonic/larval lymph gland (Drosophila) consider: FBbt:00001722 ! ring gland (Drosophila) comment: Obsoleted because I can find no trace of usage of this term in curation or in the literature despite an extensive search. The ontology term originated as 'cardiovascular gland' in the earliest versions of the anatomy ontology (as a simple nested CV circa 1992) with a reference to FBrf0031012 == Rizki, 1978, Ashburner, Wright, 1978-1980 b: 397--452. However, this reference contains no mention of a cardiovascular gland. The two obvious candidates to map this to are the ring gland or the lymph gland, as both are associated with the anterior of the dorsal vessel. However, the earliest versions of the anatomy CV also have terms for these. DOS110317 subset: cur ! cur synonym: "larval cardiovascular gland" EXACT [] [Term] id: FBbt:00001677 name: embryonic/larval ostia (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005688 alt_id: FBbt:00005689 def: "Paired cardiomyocytes forming a valve of the larval heart that permit hemolymph to enter the heart for circulation." [FlyBase:FBrf0031012, FlyBase:FBrf0064793, FlyBase:FBrf0139748] subset: cur ! cur synonym: "embryonic ostia" EXACT [] synonym: "larval ostia" EXACT [] synonym: "lateral valve" RELATED [FlyBase:FBrf0031012] is_a: FBbt:00005385 ! ostia (Drosophila) relationship: develops_from FBbt:00007324 ! embryonic ostial cardioblast (Drosophila) relationship: part_of FBbt:00001673 ! embryonic/larval dorsal vessel (Drosophila) [Term] id: FBbt:00001678 name: embryonic/larval ostia 1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005691 def: "Ostia of the embryonic/larval heart located at the A5/A6 segmental boundary." [FlyBase:FBrf0064793, FlyBase:FBrf0139748] subset: cur ! cur synonym: "larval ostia 1" EXACT [] is_a: FBbt:00001677 ! embryonic/larval ostia (Drosophila) [Term] id: FBbt:00001679 name: embryonic/larval ostia 2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005693 def: "Ostia of the embryonic/larval heart located at the A6/A7 segmental boundary." [FlyBase:FBrf0064793, FlyBase:FBrf0139748] subset: cur ! cur synonym: "larval ostia 2" EXACT [] is_a: FBbt:00001677 ! embryonic/larval ostia (Drosophila) [Term] id: FBbt:00001680 name: embryonic/larval ostia 3 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005695 def: "Ostia of the embryonic/larval heart located at the A6/A7 segmental boundary." [FlyBase:FBrf0064793, FlyBase:FBrf0139748] subset: cur ! cur synonym: "larval ostia 3" EXACT [] is_a: FBbt:00001677 ! embryonic/larval ostia (Drosophila) [Term] id: FBbt:00001681 name: periligament cell (Drosophila) namespace: fly_anatomy.ontology def: "Paired cells that are attached either side of the pericardial cells on both sides of the dorsal vessel, located where the alary muscle inserts into the dorsal vessel." [FlyBase:FBrf0057603] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00001682 name: embryonic/larval hemocoel (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005697 def: "Hemocoel of the embryo or larva." [FBC:SPR] subset: cur ! cur synonym: "embryonic/larval haemocoel" EXACT [] synonym: "larval haemocoel" EXACT [] synonym: "larval hemocoel" EXACT [] is_a: UBERON:0002323 ! body cavity relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00001683 name: embryonic/larval hemolymph (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005699 def: "Hemolymph of the embryonic/larval circulatory system." [FBC:SPR] subset: cur ! cur synonym: "embryonic/larval haemolymph" EXACT [] synonym: "larval haemolymph" EXACT [] synonym: "larval hemolymph" EXACT [] is_a: UBERON:0001011 ! hemolymph relationship: part_of FBbt:00001682 ! embryonic/larval hemocoel (Drosophila) [Term] id: FBbt:00001684 name: embryonic/larval hemocyte (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005701 def: "Circulatory cell of the embryonic/larval hemolymph." [FlyBase:FBrf0037631] subset: cur ! cur synonym: "embryonic/larval blood cell" RELATED [] synonym: "larval hemocyte" EXACT [] is_a: FBbt:00005063 ! hemocyte (Drosophila) relationship: part_of FBbt:00001682 ! embryonic/larval hemocoel (Drosophila) [Term] id: FBbt:00001688 name: podocyte (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001684 ! embryonic/larval hemocyte (Drosophila) [Term] id: FBbt:00001690 name: crystal cell (Drosophila) namespace: fly_anatomy.ontology def: "A cell that is slightly larger than the plasmatocytes and is distinguished by containing large crystalline inclusions that are not membrane bound (Brehelin, 1982)." [FlyBase:FBrf0035582, FlyBase:FBrf0037631, FlyBase:FBrf0074444] subset: cur ! cur is_a: FBbt:00001688 ! podocyte (Drosophila) is_a: FBbt:00005916 ! head mesoderm derived embryonic hemocyte (Drosophila) relationship: develops_from CL:0000395 ! procrystal cell [Term] id: FBbt:00001692 name: embryonic/larval garland organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100313 ! multicellular structure (Drosophila) relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00001693 name: embryonic/larval garland cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005703 alt_id: FBbt:00005705 subset: cur ! cur synonym: "larval garland cell" EXACT [] synonym: "larval garland organ" EXACT [] synonym: "nephrocyte" RELATED [] synonym: "wreath cell" EXACT [] is_a: CL:0000486 ! garland cell relationship: develops_from FBbt:00005462 ! garland cell primordium (Drosophila) relationship: part_of FBbt:00001692 ! embryonic/larval garland organ (Drosophila) [Term] id: FBbt:00001694 name: embryonic/larval oenocyte (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005707 def: "Embryonic/larval oenocytes are large, polyploid cells whose cytoplasm contains yellowish granules. They are arranged in clusters in abdominal segments 1-7, under the epidermis, to which they are attached by fine elastic cellular extensions. As the animal ages, the number of granules increases and the cells become highly enlarged relative to their neighbors. These cells have been shown to function in the breakdown of stored lipids and may also control feeding behaviour (Gutierrez et al., 2007). These cells degenerate during late pupal stages." [FlyBase:FBrf0007734, FlyBase:FBrf0192579] subset: cur ! cur synonym: "larval oenocyte" EXACT [] is_a: CL:0000487 ! oenocyte relationship: develops_from FBbt:00007021 ! embryonic/larval oenocyte precursor (Drosophila) relationship: part_of FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) [Term] id: FBbt:00001695 name: abdominal larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of 4-9 larval oenocytes situated bilaterally in each of abdominal segments 1-7 in a space between the dorsoventral muscles and the body wall. Each cell group is closely associated with an 'abdominal lateral pentascolopidial chordotonal organ lch5' and is supplied by its own tracheal branch." [FlyBase:FBrf0007734, FlyBase:FBrf0134578] subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: develops_from FBbt:00017020 ! oenocyte primordium (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001696 name: abdominal 1 larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal larval oenocyte group (FBbt:00001695) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001697 name: abdominal 2 larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal larval oenocyte group (FBbt:00001695) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001698 name: abdominal 3 larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal larval oenocyte group (FBbt:00001695) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001699 name: abdominal 4 larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal larval oenocyte group (FBbt:00001695) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001700 name: abdominal 5 larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal larval oenocyte group (FBbt:00001695) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001701 name: abdominal 6 larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal larval oenocyte group (FBbt:00001695) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001702 name: abdominal 7 larval oenocyte group (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal larval oenocyte group (FBbt:00001695) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001695 ! abdominal larval oenocyte group (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001703 name: embryonic/larval adipose system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005709 subset: cur ! cur synonym: "larval adipose system" EXACT [] is_a: FBbt:00005065 ! adipose system (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001705 name: embryonic/larval fat body region 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001706 name: embryonic/larval fat body region 2' (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001707 name: embryonic/larval fat body region 2'' (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001708 name: embryonic/larval fat body region 3' (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001709 name: embryonic/larval fat body region 3'' (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001710 name: embryonic/larval fat body region 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001711 name: embryonic/larval fat body region 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001712 name: embryonic/larval fat body region 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001713 name: anterior fat body plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001714 name: posterior fat body plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00001715 name: embryonic/larval endocrine system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005713 def: "Endocrine system of the embryo/larva." [FBC:SPR] subset: cur ! cur synonym: "larval endocrine system" EXACT [] is_a: UBERON:0000949 ! endocrine system relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001716 name: corpus allatum primordium (Drosophila) namespace: fly_anatomy.ontology def: "The primordium that will form the embryonic/larval corpus allatum, a substructure of the embryonic/larval ring gland. It is a paired structure that becomes distinct in early dorsal closure between the head mesoderm and the epidermis of the gnathal segments. During dorsal closure the paired primordia move dorsally to meet and fuse above the cardioblasts of the developing aorta." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00017009 ! ring gland primordium (Drosophila) relationship: develops_from FBbt:00005541 ! cardiogenic mesoderm (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00001717 name: corpus cardiacum primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001720 def: "The corpora cardiaca precursor first appear during stage 10 as two pairs of head mesoderm cells between the roof of the stomodeum and the inner surface of the brain primordium. Between stages 11 and 15, these cells migrate posteriorly, gradually increasing in number. During stage 15, they fuse with the precursors of the corpus allatum from the gnathal mesoderm to form the ring gland." [FlyBase:FBrf0179777] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 CC" RELATED [FBC:ds555] synonym: "corpus cardiacum placode" RELATED [] synonym: "embryonic corpus allatum" BROAD [] is_a: FBbt:00017009 ! ring gland primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00001718 name: retrocerebral complex (Drosophila) namespace: fly_anatomy.ontology comment: Candidate for obsoletion. This term may be synonymous with 'ring gland', but it is so rarely used in the Drosophila literature that it is difficult to tell. ds100312. subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001715 ! embryonic/larval endocrine system (Drosophila) [Term] id: FBbt:00001721 name: nervus corporis cardiaci (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired nerve bundle that connects the larval ring gland to the brain." [FlyBase:FBrf0134726] subset: cur ! cur synonym: "NCC" EXACT [FlyBase:FBrf0134726] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001722 name: ring gland (Drosophila) namespace: fly_anatomy.ontology def: "A closely associated cluster of three larval endocrine glands located anterior to the aorta and larval lymph gland. Its component glands are: the corpus cardiacum, the prothoracic gland and the corpus allatum. It is innervated by neurons of the nervus corporis cardiaci." [FlyBase:FBrf0089570] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007435 ! endocrine system component (Drosophila) is_a: UBERON:0000477 ! anatomical cluster [Term] id: FBbt:00001723 name: prothoracic gland plate namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001724 name: prothoracic gland (Drosophila) namespace: fly_anatomy.ontology def: "A component of the embryonic/larval ring gland composed of a cluster of 10-20 cells on either side of the aorta. Ventrally, it is continuous with the corpus cardiaca, dorsally with the corpus allatum." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00007229 ! cell cluster organ (Drosophila) is_a: FBbt:00007435 ! endocrine system component (Drosophila) is_a: FBbt:00100317 ! gland (Drosophila) relationship: develops_from FBbt:00005497 ! prothoracic gland primordium (Drosophila) relationship: part_of FBbt:00001722 ! ring gland (Drosophila) [Term] id: FBbt:00001725 name: embryonic/larval corpus allatum (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001719 def: "A component of the embryonic/larval ring gland composed of a cluster of about 10 cells that sit medially on top of the aorta." [FlyBase:FBrf0089570] subset: cur ! cur is_a: UBERON:0001057 ! corpus allatum relationship: develops_from FBbt:00001716 ! corpus allatum primordium (Drosophila) relationship: part_of FBbt:00000011 ! gnathal segment (Drosophila) relationship: part_of FBbt:00001718 ! retrocerebral complex (Drosophila) relationship: part_of FBbt:00001722 ! ring gland (Drosophila) [Term] id: FBbt:00001726 name: embryonic/larval corpus cardiacum (Drosophila) namespace: fly_anatomy.ontology def: "A bilaterally paired neuro-endocrine structure of the embryonic/larval ring gland. Each is formed by 6-8 small neurons." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "corpora cardiaca" RELATED [] synonym: "corpora cardiacum" RELATED [] is_a: UBERON:0001056 ! corpus cardiacum relationship: develops_from FBbt:00001717 ! corpus cardiacum primordium (Drosophila) relationship: part_of FBbt:00000011 ! gnathal segment (Drosophila) relationship: part_of FBbt:00001718 ! retrocerebral complex (Drosophila) relationship: part_of FBbt:00001722 ! ring gland (Drosophila) [Term] id: FBbt:00001728 name: larval tagma (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000002 ! tagma (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001729 name: larval segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: UBERON:0000914 ! organismal segment relationship: develops_from UBERON:0000928 ! embryonic segment [Term] id: FBbt:00001730 name: larval head (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: FBbt:00001728 ! larval tagma (Drosophila) is_a: UBERON:0000033 ! head [Term] id: FBbt:00001731 name: larval ocular segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval acron" RELATED [] is_a: FBbt:00000005 ! ocular segment (Drosophila) is_a: FBbt:00001733 ! larval procephalic segment (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00001732 name: larval head segment (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0075072] subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: FBbt:00000006 ! head segment (Drosophila) is_a: FBbt:00001729 ! larval segment (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00001733 name: larval procephalic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: FBbt:00000007 ! procephalic segment (Drosophila) is_a: FBbt:00001732 ! larval head segment (Drosophila) [Term] id: FBbt:00001734 name: larval labral segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: FBbt:00000008 ! labral segment (Drosophila) is_a: FBbt:00001733 ! larval procephalic segment (Drosophila) [Term] id: FBbt:00001735 name: larval antennal segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: FBbt:00000009 ! antennal segment (Drosophila) is_a: FBbt:00001733 ! larval procephalic segment (Drosophila) [Term] id: FBbt:00001736 name: larval intercalary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000010 ! intercalary segment (Drosophila) is_a: FBbt:00001733 ! larval procephalic segment (Drosophila) [Term] id: FBbt:00001737 name: larval gnathal segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000011 ! gnathal segment (Drosophila) is_a: FBbt:00001732 ! larval head segment (Drosophila) [Term] id: FBbt:00001738 name: larval mandibular segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000012 ! mandibular segment (Drosophila) is_a: FBbt:00001737 ! larval gnathal segment (Drosophila) [Term] id: FBbt:00001739 name: larval maxillary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000013 ! maxillary segment (Drosophila) is_a: FBbt:00001737 ! larval gnathal segment (Drosophila) [Term] id: FBbt:00001740 name: larval labial segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000014 ! labial segment (Drosophila) is_a: FBbt:00001737 ! larval gnathal segment (Drosophila) [Term] id: FBbt:00001741 name: larval thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000015 ! thorax (Drosophila) is_a: FBbt:00001728 ! larval tagma (Drosophila) [Term] id: FBbt:00001742 name: larval thoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000016 ! thoracic segment (Drosophila) is_a: FBbt:00001729 ! larval segment (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) [Term] id: FBbt:00001743 name: larval prothoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] is_a: FBbt:00000017 ! prothoracic segment (Drosophila) is_a: FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00001744 name: larval mesothoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] is_a: FBbt:00000018 ! mesothoracic segment (Drosophila) is_a: FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00001745 name: larval metathoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] is_a: FBbt:00000019 ! metathoracic segment (Drosophila) is_a: FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00001746 name: larval abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Any abdomen (FBbt:00000020) that is part of some larva (FBbt:00001727)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000020 ! abdomen (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001747 name: larval abdominal segment (Drosophila) namespace: fly_anatomy.ontology def: "Any segment (FBbt:00000003) that is part of some larval abdomen (FBbt:00001746)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001748 name: larval abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a1" RELATED [] is_a: FBbt:00000022 ! abdominal segment 1 (Drosophila) is_a: FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001749 name: larval abdominal segment 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a2" RELATED [] is_a: FBbt:00000023 ! abdominal segment 2 (Drosophila) is_a: FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001750 name: larval abdominal segment 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a3" RELATED [] is_a: FBbt:00000024 ! abdominal segment 3 (Drosophila) is_a: FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001751 name: larval abdominal segment 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a4" RELATED [] is_a: FBbt:00000025 ! abdominal segment 4 (Drosophila) is_a: FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001752 name: larval abdominal segment 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a5" RELATED [] is_a: FBbt:00000026 ! abdominal segment 5 (Drosophila) is_a: FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001753 name: larval abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a6" RELATED [] is_a: FBbt:00000027 ! abdominal segment 6 (Drosophila) is_a: FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001754 name: larval abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a7" RELATED [] is_a: FBbt:00000028 ! abdominal segment 7 (Drosophila) is_a: FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00001755 name: larval abdominal segment 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a8" RELATED [] is_a: FBbt:00000029 ! abdominal segment 8 (Drosophila) is_a: FBbt:00001747 ! larval abdominal segment (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001756 name: larval abdominal segment 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a9" RELATED [] is_a: FBbt:00000030 ! abdominal segment 9 (Drosophila) is_a: FBbt:00001747 ! larval abdominal segment (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001757 name: larval abdominal segment 10 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "a10" RELATED [] is_a: FBbt:00000031 ! abdominal segment 10 (Drosophila) is_a: FBbt:00001747 ! larval abdominal segment (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001758 name: larval abdominal segment 11 (Drosophila) namespace: fly_anatomy.ontology def: "Rudimentary larval abdominal segment that surrounds the anal opening." [FlyBase:FBrf0064788] subset: cur ! cur synonym: "a11" RELATED [] is_a: FBbt:00000032 ! abdominal segment 11 (Drosophila) is_a: FBbt:00001747 ! larval abdominal segment (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001759 name: larval telson (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000033 ! telson (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00001760 name: embryonic/larval imaginal precursor (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal precursor that is part of the embryo/larva." [FBC:SPR] subset: cur ! cur synonym: "larval imaginal precursor" EXACT [] is_a: FBbt:00005023 ! imaginal precursor (Drosophila) relationship: part_of UBERON:0002548 ! larva relationship: part_of UBERON:0003142 ! prepupa relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00001762 name: peripodial epithelium (Drosophila) namespace: fly_anatomy.ontology def: "A squamous epithelium that makes up one side of the epithelial sac of which each imaginal disc consists. The anterior-posterior compartment boundary of each disc runs through the middle of this epithelium. During the third larval instar stage, the cells in this epithelium send out long processes, known as lumenal extensions, which contact cells of the disc epithelium proper." [FlyBase:FBrf0131300] subset: cur ! cur synonym: "peripodial membrane" EXACT [] is_a: FBbt:00007028 ! squamous epithelium (Drosophila) relationship: part_of UBERON:0000939 ! imaginal disc [Term] id: FBbt:00001763 name: peripodial stalk (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001762 ! peripodial epithelium (Drosophila) [Term] id: FBbt:00001764 name: labial disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc that, in the adult, gives rise to the proboscis, including the prementum, prestomal cavity, labellum, labellar cap and pseudotrachea (Cohen, 1993)." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000939 ! imaginal disc relationship: develops_from FBbt:00001650 ! labial disc primordium (Drosophila) relationship: part_of FBbt:00001740 ! larval labial segment (Drosophila) [Term] id: FBbt:00001765 name: clypeo-labral disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc that in the adults gives rise to the labrum, anterior and posterior cibarial plates, fish trap bristles, epipharyngeal sclerite and clypeus (Cohen, 1993)." [FlyBase:FBrf0064789] subset: cur ! cur synonym: "clypeolabral disc" EXACT [] is_a: UBERON:0000939 ! imaginal disc relationship: develops_from FBbt:00005514 ! adult clypeo-labral primordium (Drosophila) relationship: part_of FBbt:00001734 ! larval labral segment (Drosophila) [Term] id: FBbt:00001766 name: eye-antennal disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc that, in the adults, gives rise to the eye, antenna, head capsule (including all bristles and external membranes) and the maxillary palps (Cohen, 1993)." [FlyBase:FBrf0064789] comment: Figure 12 from Cohen (1993, Bate, Martinez Arias, 1993: 747--841) provides a fate map of the eye-antennal disc. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000939 ! imaginal disc relationship: develops_from FBbt:00001652 ! eye-antennal disc primordium (Drosophila) [Term] id: FBbt:00001767 name: antennal disc (Drosophila) namespace: fly_anatomy.ontology def: "Posterior portion of the eye-antennal disc. It gives rise to the adult antennal segments and the maxillary palp, as well as contributing to the head capsule." [FlyBase:FBrf0064789] comment: Figure 12 from Cohen (1993, Bate, Martinez Arias, 1993: 747--841) provides a fate map of the eye-antennal disc. subset: cur ! cur is_a: UBERON:0000939 ! imaginal disc relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) relationship: part_of FBbt:00001766 ! eye-antennal disc (Drosophila) [Term] id: FBbt:00001768 name: eye disc (Drosophila) namespace: fly_anatomy.ontology def: "Anterior, bulbous portion of the eye-antennal disc that gives rise to the eye as well as contributing to the head capsule (Cohen, 1993)." [FlyBase:FBrf0064789] comment: Figure 12 from Cohen (1993, Bate, Martinez Arias, 1993: 747--841) provides a fate map of the eye-antennal disc. subset: cur ! cur is_a: UBERON:0000939 ! imaginal disc relationship: develops_from FBbt:00105515 ! adult eye primordium late (Drosophila) relationship: part_of FBbt:00001766 ! eye-antennal disc (Drosophila) [Term] id: FBbt:00001769 name: morphogenetic furrow (Drosophila) namespace: fly_anatomy.ontology def: "A furrow in the eye disc, caused by apical constriction of cells in the developing eye disc epithelium, in which the assembly of ommatidia begins." [FlyBase:FBrf0064798] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00001768 ! eye disc (Drosophila) [Term] id: FBbt:00001770 name: ommatidial precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of cells in the eye-disc that is the precursor to an adult ommatidium. Eventually there are approximately 750 ommatidial precursor clusters per eye-disc, the first forming at approximately 70hrs before pupation along the morphogenic furrow. A new row of adult ommatidial precursors then emerges from the morphogenic furrow roughly every 1.5 hours." [FlyBase:FBrf0064798] subset: cur ! cur is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00007143 ! eye disc posterior to the morphogenetic furrow (Drosophila) [Term] id: FBbt:00001771 name: five-cell ommatidial precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "Ommatidial precursor cluster composed of five prospective photoreceptors: R8, R2, R5, R3 and R4. This precursor cluster is formed when the mystery cells leave the cluster to rejoin the surrounding, unpatterned epithelium. The nuclei of the remaining cells rise apically whereas the nuclei of the surrounding cells descend." [FlyBase:FBrf0064789] subset: cur ! cur synonym: "five-cell ommatidial precursor" EXACT [] is_a: FBbt:00001770 ! ommatidial precursor cluster (Drosophila) relationship: develops_from FBbt:00007144 ! early ommatidial precursor cluster (Drosophila) [Term] id: FBbt:00001772 name: immature eight-cell ommatidial precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "Ommatidial precursor cluster composed of eight future photoreceptors. It forms when the precursors of photoreceptors of R1, R7 and R6 form during the second mitotic wave and join the cluster. The nuclei of these newly joined cells begin to climb apically, with R7 lagging behind R1 and R6." [FlyBase:FBrf0064789] subset: cur ! cur is_a: FBbt:00001770 ! ommatidial precursor cluster (Drosophila) relationship: develops_from FBbt:00001771 ! five-cell ommatidial precursor cluster (Drosophila) [Term] id: FBbt:00001773 name: mature eight-cell ommatidial precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "Ommatidial precursor cluster composed of eight future photoreceptors. The nuclei of R8, R2 and R5 are displaced basally compared to the immature eight cell precursor clusters, whereas R7's nucleus is still ascending. The bilateral symmetry of the ommatidium is prominent at this stage. The apical processes of the cells that will become the anterior and posterior cone cells occupy their definitive niches, contacting R2 and R5, respectively (Cohen, 1993)." [FlyBase:FBrf0064789] subset: cur ! cur synonym: "symmetrical eight-cell ommatidial precursor cluster" RELATED [] is_a: FBbt:00001770 ! ommatidial precursor cluster (Drosophila) relationship: develops_from FBbt:00001772 ! immature eight-cell ommatidial precursor cluster (Drosophila) [Term] id: FBbt:00001774 name: two cone-cell ommatidial precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "Ommatidial precursor cluster composed of eight future photoreceptors and two cone cell precursors. The two cone-cell ommatidial precursor stage is defined by the apical arrival of the nuclei of R7 and the anterior and posterior cone-cells. The nuclei of R1 and R6 are displaced basally. R4 loses its apical contact with R8, and R3 contacts R5 (Cohen, 1993)." [FlyBase:FBrf0064789] subset: cur ! cur is_a: FBbt:00001770 ! ommatidial precursor cluster (Drosophila) relationship: develops_from FBbt:00001773 ! mature eight-cell ommatidial precursor cluster (Drosophila) relationship: part_of FBbt:00007143 ! eye disc posterior to the morphogenetic furrow (Drosophila) [Term] id: FBbt:00001775 name: four cone-cell ommatidial precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "Ommatidial precursor cluster composed of eight future photoreceptors and four cone cell precursors. The four cone-cell ommatidial precursor cluster is achieved with the apical arrival of the nuclei of the polar and equatorial cone cells that have risen over future photoreceptors R3 and R4 on the polar side and R7 on the equatorial side. At this stage all nuclei are displaced basally. R8 begins to move anteriorly squeezing between R1 and R2, where it will remain through adult life (Cohen, 1993)." [FlyBase:FBrf0064789] subset: cur ! cur is_a: FBbt:00001770 ! ommatidial precursor cluster (Drosophila) relationship: develops_from FBbt:00001774 ! two cone-cell ommatidial precursor cluster (Drosophila) relationship: part_of FBbt:00007143 ! eye disc posterior to the morphogenetic furrow (Drosophila) [Term] id: FBbt:00001776 name: dorsal thoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc that is a precursor of dorsal thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal thoracic disk" EXACT [] is_a: UBERON:0000939 ! imaginal disc relationship: develops_from FBbt:00001653 ! dorsal thoracic disc primordium (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00001777 name: humeral disc (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal imaginal disc of the prothoracic segment that is the precursor of structures of the adult dorsal prothorax including the humerus." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal prothoracic disc" EXACT [] is_a: FBbt:00001776 ! dorsal thoracic disc (Drosophila) relationship: develops_from FBbt:00001654 ! dorsal prothoracic disc primordium (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00001778 name: wing disc (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal imaginal disc of the mesothorax. Precursor of dorsal mesothoracic structures of the adult including the postnotum, scutum, scutellum, wing, wing hinge and part of the notal plura." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal mesothoracic disc" EXACT [] is_a: FBbt:00001776 ! dorsal thoracic disc (Drosophila) relationship: develops_from FBbt:00001655 ! dorsal mesothoracic disc primordium (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00001779 name: haltere disc (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal imaginal disc of the metathorax. Precursor of structure of the adult dorsal metathorax including the haltere." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "dorsal metathoracic disc" EXACT [] is_a: FBbt:00001776 ! dorsal thoracic disc (Drosophila) relationship: develops_from FBbt:00001656 ! dorsal metathoracic disc primordium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00001780 name: ventral thoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc that is a precursor of ventral thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "leg disc" RELATED [] synonym: "ventral thoracic disk" EXACT [] is_a: UBERON:0000939 ! imaginal disc relationship: develops_from FBbt:00001657 ! ventral thoracic disc primordium (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00001781 name: prothoracic leg disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc of the ventral prothoracic segment. Precursor of structures of the adult ventral prothorax including the prothoracic (1sr) leg." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "1st leg disc" EXACT [] synonym: "ventral prothoracic disc" EXACT [] is_a: FBbt:00001780 ! ventral thoracic disc (Drosophila) relationship: develops_from FBbt:00001658 ! ventral prothoracic disc primordium (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00001782 name: mesothoracic leg disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc of the ventral mesothoracic segment. Precursor of structures of the adult ventral mesothorax including the mesothoracic (2nd) leg." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "2nd leg disc" EXACT [] synonym: "ventral mesothoracic disc" EXACT [] is_a: FBbt:00001780 ! ventral thoracic disc (Drosophila) relationship: develops_from FBbt:00001659 ! ventral mesothoracic disc primordium (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00001783 name: metathoracic leg disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc of the ventral metathoracic segment. Precursor of structures of the adult ventral metathorax including the metathoracic (3rd) leg." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "3rd leg disc" EXACT [] synonym: "ventral metathoracic disc" EXACT [] is_a: FBbt:00001780 ! ventral thoracic disc (Drosophila) relationship: develops_from FBbt:00001660 ! ventral metathoracic disc primordium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00001784 name: genital disc (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal disc that gives rise to the internal and external genitalia, analia and adult hind gut (Cohen, 1993)." [FlyBase:FBrf0064789] subset: cur ! cur is_a: UBERON:0000939 ! imaginal disc relationship: develops_from FBbt:00001661 ! genital disc primordium (Drosophila) [Term] id: FBbt:00001785 name: male genital disc (Drosophila) namespace: fly_anatomy.ontology def: "Genital disc that gives rise to the penis and external genitalia, sperm pump, ejaculatory duct, paragonia and vas deferens, anal plates and adult hindgut (Cohen, 1993)." [FlyBase:FBrf0064789] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001784 ! genital disc (Drosophila) relationship: develops_from FBbt:00001662 ! male genital disc primordium (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00001786 name: female repressed primordium (Drosophila) namespace: fly_anatomy.ontology def: "The genital primordium that is repressed in the female genital disc." [FlyBase:FBrf0037847, FlyBase:FBrf0064788] subset: cur ! cur synonym: "RMP" RELATED [FlyBase:FBrf0037847] synonym: "repressed male genital primordia" EXACT [FlyBase:FBrf0037847] is_a: FBbt:00005555 ! repressed primordium (Drosophila) relationship: part_of FBbt:00001785 ! male genital disc (Drosophila) [Term] id: FBbt:00001787 name: female genital disc (Drosophila) namespace: fly_anatomy.ontology def: "Genital disc that gives rise to the vagina and vaginal plates, uterus, parovaria, spermatheca, seminal recepticle, oviducts, female analia and hindgut. (Cohen, 1993)." [FlyBase:FBrf0064789] subset: cur ! cur is_a: FBbt:00001784 ! genital disc (Drosophila) relationship: develops_from FBbt:00001663 ! female genital disc primordium (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00001788 name: male repressed primordium (Drosophila) namespace: fly_anatomy.ontology def: "The genital primordium that is repressed in the male genital disc." [FlyBase:FBrf0037847, FlyBase:FBrf0064788] subset: cur ! cur synonym: "RFP" RELATED [FlyBase:FBrf0037847] synonym: "repressed female genital primordia" EXACT [FlyBase:FBrf0037847] is_a: FBbt:00005555 ! repressed primordium (Drosophila) relationship: part_of FBbt:00001787 ! female genital disc (Drosophila) [Term] id: FBbt:00001790 name: histoblast nest (Drosophila) namespace: fly_anatomy.ontology def: "One of several groups of cells in the larval abdomen that gives rise to the adult external abdomen." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: CL:0000373 ! histoblast relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00001791 name: dorsal histoblast nest abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001790 ! histoblast nest (Drosophila) is_a: FBbt:00005831 ! dorsal imaginal precursor (Drosophila) [Term] id: FBbt:00001792 name: anterior dorsal histoblast nest abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001791 ! dorsal histoblast nest abdominal (Drosophila) [Term] id: FBbt:00001793 name: small cell associated with anterior dorsal histoblasts abdominal (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0030719] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) [Term] id: FBbt:00001794 name: anterior dorsal histoblast nest abdominal 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any anterior dorsal histoblast nest abdominal (FBbt:00001792) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001795 name: small cell associated with anterior dorsal histoblasts abdominal 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001793 ! small cell associated with anterior dorsal histoblasts abdominal (Drosophila) relationship: part_of FBbt:00001794 ! anterior dorsal histoblast nest abdominal 1 (Drosophila) [Term] id: FBbt:00001796 name: anterior dorsal histoblast nest abdominal 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any anterior dorsal histoblast nest abdominal (FBbt:00001792) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001797 name: small cell associated with anterior dorsal histoblasts abdominal 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001793 ! small cell associated with anterior dorsal histoblasts abdominal (Drosophila) relationship: part_of FBbt:00001796 ! anterior dorsal histoblast nest abdominal 2 (Drosophila) [Term] id: FBbt:00001798 name: anterior dorsal histoblast nest abdominal 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any anterior dorsal histoblast nest abdominal (FBbt:00001792) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001799 name: small cell associated with anterior dorsal histoblasts abdominal 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001793 ! small cell associated with anterior dorsal histoblasts abdominal (Drosophila) relationship: part_of FBbt:00001798 ! anterior dorsal histoblast nest abdominal 3 (Drosophila) [Term] id: FBbt:00001800 name: anterior dorsal histoblast nest abdominal 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any anterior dorsal histoblast nest abdominal (FBbt:00001792) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001801 name: small cell associated with anterior dorsal histoblasts abdominal 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001793 ! small cell associated with anterior dorsal histoblasts abdominal (Drosophila) relationship: part_of FBbt:00001800 ! anterior dorsal histoblast nest abdominal 4 (Drosophila) [Term] id: FBbt:00001802 name: anterior dorsal histoblast nest abdominal 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any anterior dorsal histoblast nest abdominal (FBbt:00001792) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001803 name: small cell associated with anterior dorsal histoblasts abdominal 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001793 ! small cell associated with anterior dorsal histoblasts abdominal (Drosophila) relationship: part_of FBbt:00001802 ! anterior dorsal histoblast nest abdominal 5 (Drosophila) [Term] id: FBbt:00001804 name: anterior dorsal histoblast nest abdominal 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any anterior dorsal histoblast nest abdominal (FBbt:00001792) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001805 name: small cell associated with anterior dorsal histoblasts abdominal 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001793 ! small cell associated with anterior dorsal histoblasts abdominal (Drosophila) relationship: part_of FBbt:00001804 ! anterior dorsal histoblast nest abdominal 6 (Drosophila) [Term] id: FBbt:00001806 name: anterior dorsal histoblast nest abdominal 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any anterior dorsal histoblast nest abdominal (FBbt:00001792) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001807 name: small cell associated with anterior dorsal histoblasts abdominal 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001793 ! small cell associated with anterior dorsal histoblasts abdominal (Drosophila) relationship: part_of FBbt:00001806 ! anterior dorsal histoblast nest abdominal 7 (Drosophila) [Term] id: FBbt:00001808 name: anterior dorsal histoblast nest abdominal 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00001809 name: posterior dorsal histoblast nest abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001790 ! histoblast nest (Drosophila) [Term] id: FBbt:00001810 name: posterior dorsal histoblast nest abdominal 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any posterior dorsal histoblast nest abdominal (FBbt:00001809) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001811 name: posterior dorsal histoblast nest abdominal 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any posterior dorsal histoblast nest abdominal (FBbt:00001809) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001812 name: posterior dorsal histoblast nest abdominal 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any posterior dorsal histoblast nest abdominal (FBbt:00001809) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001813 name: posterior dorsal histoblast nest abdominal 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any posterior dorsal histoblast nest abdominal (FBbt:00001809) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001814 name: posterior dorsal histoblast nest abdominal 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any posterior dorsal histoblast nest abdominal (FBbt:00001809) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001815 name: posterior dorsal histoblast nest abdominal 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any posterior dorsal histoblast nest abdominal (FBbt:00001809) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001816 name: posterior dorsal histoblast nest abdominal 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any posterior dorsal histoblast nest abdominal (FBbt:00001809) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001817 name: posterior dorsal histoblast nest abdominal 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00001818 name: ventral histoblast nest abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001790 ! histoblast nest (Drosophila) [Term] id: FBbt:00001819 name: ventral histoblast nest abdominal 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral histoblast nest abdominal (FBbt:00001818) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001820 name: ventral histoblast nest abdominal 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral histoblast nest abdominal (FBbt:00001818) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001821 name: ventral histoblast nest abdominal 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral histoblast nest abdominal (FBbt:00001818) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001822 name: ventral histoblast nest abdominal 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral histoblast nest abdominal (FBbt:00001818) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001823 name: ventral histoblast nest abdominal 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral histoblast nest abdominal (FBbt:00001818) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001824 name: ventral histoblast nest abdominal 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral histoblast nest abdominal (FBbt:00001818) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001825 name: ventral histoblast nest abdominal 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral histoblast nest abdominal (FBbt:00001818) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001826 name: spiracular histoblast nest abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001790 ! histoblast nest (Drosophila) [Term] id: FBbt:00001827 name: spiracular histoblast nest abdominal 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any spiracular histoblast nest abdominal (FBbt:00001826) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001828 name: spiracular histoblast nest abdominal 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any spiracular histoblast nest abdominal (FBbt:00001826) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001829 name: spiracular histoblast nest abdominal 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any spiracular histoblast nest abdominal (FBbt:00001826) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001830 name: spiracular histoblast nest abdominal 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any spiracular histoblast nest abdominal (FBbt:00001826) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001831 name: spiracular histoblast nest abdominal 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any spiracular histoblast nest abdominal (FBbt:00001826) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001832 name: spiracular histoblast nest abdominal 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any spiracular histoblast nest abdominal (FBbt:00001826) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001833 name: spiracular histoblast nest abdominal 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any spiracular histoblast nest abdominal (FBbt:00001826) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001834 name: imaginal ring (Drosophila) namespace: fly_anatomy.ontology def: "A ring shaped structure in the embryo/larva that gives rise to part of the adult." [FlyBase:FBrf0064792, ISBN:978-0-521-58445-6] subset: cur ! cur is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) is_a: FBbt:00001760 ! embryonic/larval imaginal precursor (Drosophila) [Term] id: FBbt:00001835 name: salivary gland imaginal ring (Drosophila) namespace: fly_anatomy.ontology def: "Ring of imaginal cells situated where the larval salivary glands join the salivary ducts, from which the adult salivary glands develop." [FlyBase:FBrf0064792] subset: cur ! cur is_a: FBbt:00001834 ! imaginal ring (Drosophila) relationship: part_of FBbt:00000165 ! embryonic labial segment (Drosophila) relationship: part_of FBbt:00001740 ! larval labial segment (Drosophila) relationship: part_of UBERON:0001044 ! salivary gland [Term] id: FBbt:00001836 name: foregut imaginal ring (Drosophila) namespace: fly_anatomy.ontology def: "Ring of imaginal tissue located in the embryonic/larval gut, at the junction of the foregut and midgut epithelia in the anterior part of the proventriculus. It is the precursor of the posterior region of the adult foregut." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "proventriculus imaginal ring" RELATED [] is_a: FBbt:00001834 ! imaginal ring (Drosophila) relationship: develops_from FBbt:00005611 ! adult foregut precursor (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00001837 name: midgut imaginal island (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of adult midgut precursor cells adjacent to the basement membrane of the larval midgut. These clusters are scattered throughout the larval midgut. They form by division of adult midgut precursor cells (FBbt:00000449) during larval stages. There are two such divisions during larval life, producing quartets of cells by the wandering third instar stage." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "midgut imaginal histoblasts" RELATED [] is_a: FBbt:00001760 ! embryonic/larval imaginal precursor (Drosophila) relationship: develops_from FBbt:00000449 ! adult midgut precursor cell (Drosophila) [Term] id: FBbt:00001838 name: anterior midgut imaginal island (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001837 ! midgut imaginal island (Drosophila) relationship: develops_from FBbt:00000450 ! anterior adult midgut progenitor (Drosophila) [Term] id: FBbt:00001839 name: posterior midgut imaginal island (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001837 ! midgut imaginal island (Drosophila) relationship: develops_from FBbt:00000451 ! posterior adult midgut progenitor (Drosophila) [Term] id: FBbt:00001840 name: hindgut imaginal ring (Drosophila) namespace: fly_anatomy.ontology def: "Ring of imaginal tissue located at the anterior region of the embryonic/larval hindgut, close to the Malpighian tubules, from which the adult hindgut forms. The hindgut imaginal ring cells are densely clustered, appear immature and have little cytoplasm (Murakami and Shiotsuki, 2001)." [FlyBase:FBrf0064792, FlyBase:FBrf0135849] subset: cur ! cur is_a: FBbt:00001834 ! imaginal ring (Drosophila) relationship: part_of UBERON:0001046 ! hindgut [Term] id: FBbt:00001841 name: anal imaginal ring (Drosophila) namespace: fly_anatomy.ontology def: "Imaginal tissue from which the adult anus develops." [FlyBase:FBrf0064792] subset: cur ! cur is_a: FBbt:00001834 ! imaginal ring (Drosophila) relationship: part_of FBbt:00001758 ! larval abdominal segment 11 (Drosophila) [Term] id: FBbt:00001842 name: embryonic/larval digestive system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005764 def: "." [FlyBase:FBrf0007733, FlyBase:FBrf0064792] subset: cur ! cur synonym: "larval digestive system" EXACT [] is_a: UBERON:0001007 ! digestive system relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001843 name: embryonic/larval mouth (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005765 subset: cur ! cur synonym: "larval mouth" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001730 ! larval head (Drosophila) relationship: part_of FBbt:00100323 ! embryonic/larval alimentary canal (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00001844 name: embryonic/larval cibarium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005766 subset: cur ! cur synonym: "atrium" RELATED [] synonym: "larval cibarium" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00017019 ! cibarium primordium (Drosophila) relationship: part_of FBbt:00000009 ! antennal segment (Drosophila) relationship: part_of FBbt:00001843 ! embryonic/larval mouth (Drosophila) [Term] id: FBbt:00001845 name: cephalopharyngeal skeleton (Drosophila) namespace: fly_anatomy.ontology def: "A group of connected sclerites of the anterior embryonic/larval digestive system (atrium, pharynx and dorsal pouch). The cibarial dilator muscles connect to the cephalopharyngeal skeleton to lift the roof of the pharynx and thereby widen its lumen (Jurgens, 1986)." [FlyBase:FBrf0007734, FlyBase:FBrf0045366] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "cephalo-pharyngeal skeleton" RELATED [FlyBase:FBrf0045366] synonym: "larval head skeleton" EXACT [FlyBase:FBrf0205317] synonym: "mouth parts" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) relationship: part_of FBbt:00001842 ! embryonic/larval digestive system (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:00001846 name: mouth hooks (Drosophila) namespace: fly_anatomy.ontology def: "A moveable pair of chitinous structures at the anterior tip of the cephalopharyngeal skeleton of the larva, on either side of the atrium. Each mouth hook has three processes: a hooked oral process extending anteriorly, a ventral process, and a dorsal process extending dorso-posteriorly to the median tooth. The mouth hooks develop from the maxillary segment." [FlyBase:FBrf0007733] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "mandible" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001845 ! cephalopharyngeal skeleton (Drosophila) [Term] id: FBbt:00001847 name: dental sclerite (Drosophila) namespace: fly_anatomy.ontology def: "Sclerite that helps root the mouth hooks into their epidermal pockets (Jurgens et al., 1986)." [FlyBase:FBrf0045366] subset: cur ! cur synonym: "ectostomal sclerite" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001845 ! cephalopharyngeal skeleton (Drosophila) [Term] id: FBbt:00001848 name: epipharyngeal sclerite (Drosophila) namespace: fly_anatomy.ontology def: "Unpaired sclerite to which the median tooth (labrum) posteriorly merges, and bears the cuticular pores of the labral sense organ." [FlyBase:FBrf0045366] subset: cur ! cur synonym: "epistomal sclerite" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001845 ! cephalopharyngeal skeleton (Drosophila) [Term] id: FBbt:00001849 name: hypostomal sclerite (Drosophila) namespace: fly_anatomy.ontology def: "Part of the pharyngeal sclerite consisting of two lateral bars connected by a bridge (H) across the floor of the atrium, just anterior to the opening of the salivary duct." [FlyBase:FBrf0045366] subset: cur ! cur synonym: "H-piece" EXACT [FlyBase:FBrf0007734] is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of FBbt:00000014 ! labial segment (Drosophila) relationship: part_of FBbt:00001845 ! cephalopharyngeal skeleton (Drosophila) [Term] id: FBbt:00001850 name: pharyngeal sclerite (Drosophila) namespace: fly_anatomy.ontology def: "Pharyngeal component of the cephalopharyngeal skeleton." [FBC:DOS] subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001845 ! cephalopharyngeal skeleton (Drosophila) [Term] id: FBbt:00001851 name: lateral process (Drosophila) namespace: fly_anatomy.ontology def: "Anterior portion of the cephalopharyngeal skeleton which connects posteriorly with the vertical plates. The lateral process is tightly linked to the H piece of the hypostomal sclerite (Jurgens et al., 1993)." [FlyBase:FBrf0045366] subset: cur ! cur synonym: "LG" RELATED [FlyBase:FBrf0045366] synonym: "lateralgrate" RELATED [] synonym: "lateralgraten" EXACT [FlyBase:FBrf0045366] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001845 ! cephalopharyngeal skeleton (Drosophila) relationship: part_of FBbt:00001850 ! pharyngeal sclerite (Drosophila) [Term] id: FBbt:00001852 name: ventral wing namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007163 ! ventral arm of pharyngeal sclerite (Drosophila) consider: FBbt:00007166 ! ventral wing blade (Drosophila) comment: Obsoleted because ambiguous name caused much misuse. This term referred to the ventral wing of the pharyngeal sclerite - but as this was only clear from its synonyms and part relations, it has frequently been used to refer to the ventral surface/layer of the wing blade. There are now 2 replacement terms: one referring to the ventral wing of the pharyngeal sclerite and the other to the dorsal surface of the wing (For IDs, see consider statements associated with this obsolete term). subset: cur ! cur synonym: "ventral arm" EXACT [] synonym: "ventral cornua" EXACT [] [Term] id: FBbt:00001853 name: dorsal wing namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007164 ! dorsal arm of pharyngeal sclerite (Drosophila) consider: FBbt:00007165 ! dorsal wing blade (Drosophila) comment: Obsoleted because ambiguous name has caused much misuse. This term referred to the dorsal wing of the pharyngeal sclerite - but as this was only clear from its synonyms and part relations, it has frequently been used to refer to the ventral surface/layer of the wing blade. There are now 2 replacement terms: one referring to the ventral wing of the pharyngeal sclerite and the other to the dorsal surface of the wing (For IDs, see consider statements associated with this obsolete term). subset: cur ! cur synonym: "dorsal arm" EXACT [] synonym: "dorsal cornua" EXACT [] [Term] id: FBbt:00001854 name: vertical bridge (Drosophila) namespace: fly_anatomy.ontology def: "Paired structure of the pharyngeal sclerite that connects the dorsal and ventral arms." [FlyBase:FBim0000950, FlyBase:FBrf0045366] subset: cur ! cur synonym: "ventral plate" RELATED [] synonym: "vertical plate" EXACT [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001850 ! pharyngeal sclerite (Drosophila) [Term] id: FBbt:00001855 name: dorsal bridge (Drosophila) namespace: fly_anatomy.ontology def: "Unpaired part of the pharyngeal sclerite that connects the paired vertical bridges (vertical plates) ." [FlyBase:FBim0000950, FlyBase:FBrf0045366] subset: cur ! cur synonym: "latticed process" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001850 ! pharyngeal sclerite (Drosophila) [Term] id: FBbt:00001856 name: embryonic/larval tentorium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005767 def: "Duct that arises from invagination from the maxillary and intercalary segments and runs between the dorsal pouch and the pharynx. It's ventral arm serves as a muscle attachment site for the ventral pharyngeal muscles (VPM 1-3)." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval tentorium" NARROW [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001850 ! pharyngeal sclerite (Drosophila) [Term] id: FBbt:00001857 name: embryonic/larval dorsal pouch (Drosophila) namespace: fly_anatomy.ontology def: "Pouch shaped epidermal structure that branches dorsally from the larval atrium, just behind the mouth. It contains the dorsal section of the cephalopharyngeal skeleton (dorsal bridge and dorsal arms)." [FlyBase:FBrf0045366, FlyBase:FBrf0089570] comment: Editing Flag: This probably needs fixing. There seem to be two different things referred to as a dorsal pouch. One is a transitional structure formed during development of the head, and the other is an unrelated larval structure. Need to disambiguate/disentangle. Note - possible redundancy between primordium term and embryonic term. ds060616. subset: cur ! cur synonym: "larval dorsal pouch" RELATED [] is_a: FBbt:00005807 ! dorsal pouch (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00001858 name: inner layer of dorsal pouch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001857 ! embryonic/larval dorsal pouch (Drosophila) [Term] id: FBbt:00001859 name: outer layer of dorsal pouch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001857 ! embryonic/larval dorsal pouch (Drosophila) [Term] id: FBbt:00001860 name: dorsal fold (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001857 ! embryonic/larval dorsal pouch (Drosophila) [Term] id: FBbt:00001861 name: median tooth (Drosophila) namespace: fly_anatomy.ontology def: "A grey, shovel-like structure that marks the site where the dorsal pouch branches off." [FlyBase:FBrf0045366] subset: cur ! cur synonym: "larval labrum" RELATED [] synonym: "unpaired labrum" EXACT [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00000008 ! labral segment (Drosophila) relationship: part_of FBbt:00001850 ! pharyngeal sclerite (Drosophila) [Term] id: FBbt:00001862 name: embryonic/larval foregut (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005768 def: "Anterior-most part of the embryonic/larval alimentary canal. It opens anteriorly at the mouth and is composed of the atrium (to which the salivary glands are attached), the pharynx, and the esophagus. Posteriorly, the foregut and the midgut join to form the proventriculus." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "larval foregut" EXACT [] is_a: UBERON:0001041 ! foregut relationship: develops_from FBbt:00005606 ! embryonic foregut (Drosophila) relationship: part_of FBbt:00007512 ! embryonic/larval gut (Drosophila) [Term] id: FBbt:00001863 name: hypopharyngeal lobe (Drosophila) namespace: fly_anatomy.ontology def: "Protuberance of the procephalon that marks the rudimentary third (intercalary) head segment (Hartenstein, 1993). It first becomes apparent at stage 11 of embryogenesis. This lobe bears the primordium of the hypopharyngeal organ (Jurgens and Hartenstein, 1993)." [FlyBase:FBrf0064788, FlyBase:FBrf0064803] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00000010 ! intercalary segment (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00001864 name: keyhole structure (Drosophila) namespace: fly_anatomy.ontology def: "Proventriculus primordium during embryonic stage 15 when it has a keyhole shape due to buckling of the foregut tube." [FlyBase:FBrf0079140] subset: cur ! cur is_a: FBbt:00005550 ! proventriculus primordium (Drosophila) [Term] id: FBbt:00001865 name: alveolar cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00001866 name: embryonic/larval pharynx (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005769 def: "Region of the embryonic/larval foregut between the atrium and the esophagus. It consists of a bulbous epithelial tube associated with an elaborate chitinous skeleton and musculature. The anterior edge of the pharynx is delimited ventrally by the opening of the salivary gland common duct and dorsally by the median tooth of the mouth hooks. The posterior edge is delimited by the narrowing of the foregut that marks the beginning of the esophagus." [FlyBase:FBrf0089570] comment: Bodenstein, 1950, uses the term pharynx to refer to the entire anterior portion of the larval foregut, which in this ontology is divided into the atrium (anterior) and pharynx (posterior). subset: cur ! cur synonym: "larval pharynx" EXACT [] is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00001867 name: pharyngeal bars (Drosophila) namespace: fly_anatomy.ontology def: "Chitinous ridges in the floor of the larval pharynx." [FlyBase:FBrf0045366] subset: cur ! cur synonym: "T-bars" EXACT [] synonym: "pharyngeal ribs" EXACT [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00001868 name: embryonic/larval epipharynx (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005770 def: "Floor of the embryonic-larval pharynx." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval epipharynx" EXACT [] is_a: FBbt:00005750 ! epipharynx (Drosophila) relationship: develops_from FBbt:00004201 ! epipharynx primordium (Drosophila) relationship: part_of FBbt:00000008 ! labral segment (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00001869 name: embryonic/larval hypopharynx (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005771 def: "Roof of the embryonic-larval pharynx." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval hypopharynx" EXACT [] is_a: UBERON:0003132 ! arthropod hypopharynx relationship: develops_from FBbt:00016002 ! hypopharynx proper primordium (Drosophila) relationship: part_of FBbt:00000010 ! intercalary segment (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00001870 name: embryonic/larval esophagus (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005715 def: "Region of the embryonic/larval foregut posterior to the pharynx and anterior to the proventriculus. It has an approximately uniform diameter and is much narrower than the pharynx." [FlyBase:FBrf0007733, FlyBase:FBrf0089570] subset: cur ! cur synonym: "larval esophagus" EXACT [] synonym: "larval oesophagus" EXACT [] is_a: UBERON:0001043 ! esophagus relationship: develops_from FBbt:00005507 ! esophagus primordium (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00001871 name: embryonic/larval proventriculus (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005772 def: "An organ at the junction of the foregut and midgut that has parts derived from both." [FlyBase:FBrf0007732, FlyBase:FBrf0064788, FlyBase:FBrf0064792] subset: cur ! cur synonym: "embryonic proventriculus" RELATED [] synonym: "larval proventriculus" EXACT [] is_a: FBbt:00005752 ! proventriculus (Drosophila) relationship: develops_from FBbt:00005607 ! embryonic proventriculus (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00001872 name: embryonic/larval proventriculus inner layer (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval proventriculus inner layer" EXACT [] is_a: FBbt:00005753 ! proventriculus inner layer (Drosophila) relationship: part_of FBbt:00001871 ! embryonic/larval proventriculus (Drosophila) [Term] id: FBbt:00001873 name: embryonic/larval proventriculus intermediate layer (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "embryonic/larval proventriculus recurrent layer" RELATED [] synonym: "larval proventriculus intermediate layer" EXACT [] synonym: "larval proventriculus recurrent layer" RELATED [] is_a: FBbt:00005754 ! proventriculus intermediate layer (Drosophila) relationship: part_of FBbt:00001871 ! embryonic/larval proventriculus (Drosophila) [Term] id: FBbt:00001874 name: embryonic/larval proventriculus outer layer (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval proventriculus outer layer" EXACT [] is_a: FBbt:00005755 ! proventriculus outer layer (Drosophila) relationship: part_of FBbt:00001871 ! embryonic/larval proventriculus (Drosophila) [Term] id: FBbt:00001875 name: embryonic/larval peritrophic membrane (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005773 subset: cur ! cur synonym: "larval peritrophic membrane" EXACT [] is_a: FBbt:00003142 ! peritrophic membrane (Drosophila) relationship: part_of FBbt:00001871 ! embryonic/larval proventriculus (Drosophila) [Term] id: FBbt:00001876 name: peritrophic mill (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001871 ! embryonic/larval proventriculus (Drosophila) [Term] id: FBbt:00001878 name: embryonic/larval salivary gland (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005717 def: "Salivary gland of the embryo/larva." [FBC:SPR] subset: cur ! cur synonym: "larval salivary gland" EXACT [] is_a: UBERON:0001044 ! salivary gland relationship: part_of FBbt:00001842 ! embryonic/larval digestive system (Drosophila) [Term] id: FBbt:00001879 name: trunk mesoderm in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00001880 name: embryonic/larval salivary gland duct (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005774 def: "Y-shaped tube that carries the secretions from the salivary glands to the embryonic/larval mouth." [FlyBase:FBrf0064792, FlyBase:FBrf0159337] subset: cur ! cur synonym: "larval salivary gland duct" EXACT [] is_a: FBbt:00100314 ! duct (Drosophila) relationship: develops_from FBbt:00005531 ! salivary gland duct primordium (Drosophila) relationship: part_of FBbt:00001878 ! embryonic/larval salivary gland (Drosophila) [Term] id: FBbt:00001881 name: embryonic/larval salivary gland common duct (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005775 def: "Anterior length of the salivary gland duct. Anteriorly it connects to the atrium of the foregut. Posteriorly it bifurcates into the ducts of the individual salivary glands (Skaer, 1993)." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "larval salivary gland common duct" EXACT [] is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of FBbt:00001880 ! embryonic/larval salivary gland duct (Drosophila) [Term] id: FBbt:00001882 name: embryonic/larval midgut (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005825 subset: cur ! cur synonym: "larval midgut" EXACT [] is_a: UBERON:0001045 ! midgut relationship: develops_from FBbt:00007593 ! fused midgut primordium (Drosophila) relationship: part_of FBbt:00007512 ! embryonic/larval gut (Drosophila) [Term] id: FBbt:00001883 name: anterior embryonic/larval midgut (Drosophila) namespace: fly_anatomy.ontology def: "Anterior region of the embryonic/larval midgut." [FlyBase:FBrf0064792, FlyBase:FBrf0208023] subset: cur ! cur is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001884 name: mid embryonic/larval midgut (Drosophila) namespace: fly_anatomy.ontology def: "Central part of the embryonic/larval midgut. This region is acidic (Filshie et al., 1971; Shanbhag and Tripathi, 2009). The epithelium of the anterior part consists of alternating cuprophilic cells and interstitial cells (Poulson and Bowen, 1952; Filshie et al., 1971; Shanbhag and Tripathi, 2009). Immediately posterior to this is a region of large flat cells (Poulson and Waterhouse, 1960). Posterior to this, the most posterior part of the middle midgut consists of iron accumulating cells (Poulson and Bowen, 1952)." [FlyBase:FBrf0008422, FlyBase:FBrf0013091, FlyBase:FBrf0023227, FlyBase:FBrf0064792, FlyBase:FBrf0208023] subset: cur ! cur is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001885 name: posterior embryonic/larval midgut (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most portion of the embryonic/larval midgut. The posterior half of this region is highly alkaline (> pH10; Shanbhag and Tripathi, 2009)." [FlyBase:FBrf0064792, FlyBase:FBrf0208023] subset: cur ! cur is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001886 name: embryonic/larval midgut cell (Drosophila) namespace: fly_anatomy.ontology def: "Any cell (FBbt:00007002) that is part of some embryonic/larval midgut (FBbt:00001882)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007002 ! cell (Drosophila) relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001887 name: embryonic/larval cuprophilic cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005625 def: "Large cell in the middle region of the midgut that is cup-shaped with long microvilli. In animals fed on a copper rich diet, these cells accumulate copper." [FlyBase:FBrf0008422, FlyBase:FBrf0023227, FlyBase:FBrf0064792, FlyBase:FBrf0208023] subset: cur ! cur synonym: "calycocyte" EXACT [FlyBase:FBrf0002495] synonym: "embryonic/larval copper cell" EXACT [] synonym: "larval cuprophilic cell" NARROW [] synonym: "secretory cell" EXACT [FlyBase:FBrf0208023] is_a: FBbt:00001886 ! embryonic/larval midgut cell (Drosophila) is_a: FBbt:00005782 ! cuprophilic cell (Drosophila) relationship: develops_from FBbt:00005451 ! cuprophilic cell primordium (Drosophila) relationship: part_of FBbt:00001884 ! mid embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001888 name: embryonic/larval midgut interstitial cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005626 def: "Columnar cell of the middle midgut, with short microvilli and deep infolding of the basement membrane forming a basal labyrinth. In the anterior region of the middle midgut, these cells alternate with cuprophilic cells." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "absorptive cell of middle midgut" EXACT [FlyBase:FBrf0208023] synonym: "embryonic midgut interstitial cell" NARROW [] synonym: "larval midgut interstitial cell" NARROW [] is_a: FBbt:00001890 ! embryonic/larval principal midgut epithelial cell (Drosophila) is_a: FBbt:00005783 ! midgut interstitial cell (Drosophila) relationship: develops_from FBbt:00000446 ! interstitial cell precursor (Drosophila) relationship: part_of FBbt:00001884 ! mid embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001889 name: iron accumulating cell (Drosophila) namespace: fly_anatomy.ontology def: "A cell type of the posterior-most region of the middle midgut of the larva that accumulates iron when this is present at low concentrations in the food (1ug/g of ferric ferrocyanide (Prussian blue))." [FlyBase:FBrf0008422] subset: cur ! cur is_a: FBbt:00001886 ! embryonic/larval midgut cell (Drosophila) relationship: part_of FBbt:00001884 ! mid embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001890 name: embryonic/larval principal midgut epithelial cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005627 def: "A columnar/cuboidal, absorptive epithelial cell of the embryonic/larval midgut epithelium. It has an apical brush border and a basal labyrinth." [FBC:DOS] subset: cur ! cur synonym: "PMEC" RELATED [] synonym: "embryonic principal midgut epithelial cell" NARROW [] synonym: "larval principal midgut epithelial cell" NARROW [] is_a: FBbt:00001886 ! embryonic/larval midgut cell (Drosophila) is_a: FBbt:00005784 ! principal midgut epithelial cell (Drosophila) relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00001891 name: embryonic/larval hindgut (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005826 def: "Posterior part of the embryonic/larval alimentary canal. It extends anteriorly from close to the point of attachment of the Malpighian tubules to the anus (Skaer, 1993)." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "larval hindgut" EXACT [] is_a: UBERON:0001046 ! hindgut relationship: part_of FBbt:00007512 ! embryonic/larval gut (Drosophila) [Term] id: FBbt:00001892 name: embryonic/larval rectum (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005779 def: "Posterior-most portion of the embryonic/larval alimentary canal, terminating in the anus." [FlyBase:FBrf0064792, FlyBase:FBrf0186027] subset: cur ! cur synonym: "larval rectum" EXACT [] is_a: UBERON:0006866 ! terminal part of digestive tract relationship: develops_from FBbt:00005506 ! rectum primordium (Drosophila) relationship: part_of FBbt:00001891 ! embryonic/larval hindgut (Drosophila) [Term] id: FBbt:00001894 name: embryonic/larval anal pad (Drosophila) namespace: fly_anatomy.ontology def: "Organ consisting of paired symmetrical plates composed of large cuboidal cells, covered in a thin cuticle, and located ventrally on the last segment of the embryo/larva surrounding the anus." [FlyBase:FBrf0047374] subset: cur ! cur synonym: "anal organ" RELATED [] synonym: "larval anal pad" EXACT [] is_a: FBbt:00005785 ! anal pad (Drosophila) relationship: develops_from FBbt:00005748 ! embryonic anal pad (Drosophila) relationship: part_of UBERON:0001245 ! anus [Term] id: FBbt:00001895 name: anal slit (Drosophila) namespace: fly_anatomy.ontology def: "External opening of the anus." [FBC:SPR] subset: cur ! cur is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001245 ! anus [Term] id: FBbt:00001897 name: embryonic/larval posterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology def: "Malpighian tubule attached to the left hand side of the alimentary canal and lying in a posterior orientation (Wessing and Eichelberg, 1978)." [FlyBase:FBrf0030988] subset: cur ! cur synonym: "larval posterior Malpighian tubule" EXACT [] is_a: FBbt:00005787 ! posterior Malpighian tubule (Drosophila) is_a: UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00001898 name: embryonic/larval anterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology def: "Malpighian tubule attached to the right hand side of the alimentary canal and lying in an anterior orientation (Wessing and Eichelberg, 1978)." [FlyBase:FBrf0030988] subset: cur ! cur synonym: "larval anterior Malpighian tubule" EXACT [] is_a: FBbt:00005788 ! anterior Malpighian tubule (Drosophila) is_a: UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00001899 name: embryonic/larval Malpighian tubule segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval Malpighian tubule segment" EXACT [] is_a: FBbt:00005789 ! Malpighian tubule segment (Drosophila) relationship: part_of UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00001900 name: embryonic/larval initial segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval initial segment of Malpighian tubule" EXACT [] is_a: FBbt:00001899 ! embryonic/larval Malpighian tubule segment (Drosophila) is_a: FBbt:00005790 ! initial segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00001901 name: embryonic/larval transitional segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval transitional segment of Malpighian tubule" EXACT [] is_a: FBbt:00001899 ! embryonic/larval Malpighian tubule segment (Drosophila) is_a: FBbt:00005791 ! transitional segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00001902 name: embryonic/larval main segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval main segment of Malpighian tubule" RELATED [] is_a: FBbt:00001899 ! embryonic/larval Malpighian tubule segment (Drosophila) is_a: FBbt:00005792 ! main segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00001903 name: embryonic/larval ureter (Drosophila) namespace: fly_anatomy.ontology def: "Proximal segment connecting a pair of Malpighian tubules to the alimentary canal in the embryo/larva. The ureter is surrounded by longitudinal and circular muscles." [FlyBase:FBrf0030988] subset: cur ! cur synonym: "larval ureter" EXACT [] is_a: FBbt:00001899 ! embryonic/larval Malpighian tubule segment (Drosophila) is_a: FBbt:00005793 ! ureter (Drosophila) [Term] id: FBbt:00001904 name: embryonic/larval specialised Malpighian tubule cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval specialised Malpighian tubule cell" EXACT [] is_a: FBbt:00005794 ! specialised Malpighian tubule cell (Drosophila) relationship: part_of UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00001905 name: embryonic/larval Malpighian tubule tip cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval Malpighian tubule tip cell" EXACT [] is_a: FBbt:00001904 ! embryonic/larval specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005795 ! Malpighian tubule tip cell (Drosophila) [Term] id: FBbt:00001906 name: embryonic/larval Malpighian tubule Type I cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval Malpighian tubule Type I cell" EXACT [] is_a: FBbt:00001904 ! embryonic/larval specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005796 ! Malpighian tubule Type I cell (Drosophila) [Term] id: FBbt:00001907 name: embryonic/larval Malpighian tubule Type II cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval Malpighian tubule Type II cell" EXACT [] is_a: FBbt:00001904 ! embryonic/larval specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005797 ! Malpighian tubule Type II cell (Drosophila) [Term] id: FBbt:00001908 name: adult excretory structure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005724 ! adult excretory system (Drosophila) [Term] id: FBbt:00001909 name: yellow body (Drosophila) namespace: fly_anatomy.ontology def: "During adult midgut development, the epithelia of the larval proventriculus, gastric caeca, and midgut are sloughed off into the lumen of the new midgut, to form the yellow body, which is evacuated as the meconium after adult eclosion (Skaer, 1993)." [FlyBase:FBrf0064792] subset: cur ! cur is_a: UBERON:0000463 ! portion of organism substance [Term] id: FBbt:00001910 name: meconium (Drosophila) namespace: fly_anatomy.ontology def: "The contents of the gut at eclosion." [FlyBase:FBrf0064792] subset: cur ! cur is_a: UBERON:0000463 ! portion of organism substance [Term] id: FBbt:00001911 name: embryonic/larval nervous system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005719 def: "Nervous system of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0075072, FlyBase:FBrf0105282] subset: cur ! cur synonym: "larval nervous system" EXACT [] is_a: UBERON:0001016 ! nervous system relationship: part_of FBbt:00005333 ! late embryo (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00001912 name: larval neuromere (Drosophila) namespace: fly_anatomy.ontology def: "Neuromere of the larva." [FlyBase:FBrf0084032, FlyBase:FBrf0089217, FlyBase:FBrf0105282] subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001913 name: larval LN period neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose soma is located in a cluster between the larval optic lobe and the central brain that shows strong cycling of Period (FBgn0003068) expression from 4-5hr old L1 larvae located starting from around 4-5 hours after hatching. There are about 5 neurons per cluster." [FlyBase:FBrf0098279] comment: Expression of Period was determined by per-lacZ fusion expression (Kaneko et al., 1997). subset: cur ! cur synonym: "LN" RELATED [] synonym: "larval lateral neuron" EXACT [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00100164 ! larval pacemaker neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001914 name: larval DN period neuron (Drosophila) namespace: fly_anatomy.ontology def: "A Per (FBgn0003068) expressing neuron that is located in a dorsoanterior cluster in the larval brain." [FlyBase:FBrf0056576, FlyBase:FBrf0098279] comment: Kaneko et al., (1997) suggest that the larval DN period neurons could be the same cells as the adult DN period neurons based on position of the soma. However, they further comment that these cells do not continuously express Period (FBgn0003068) throughout the developmental stages, making developmental profiling difficult. Furthermore, antiphase cycling of Period observed in larval DN period neuron-2 was not found in either the pupal or adult DN period neuron-2, suggesting that these cells would have to change their Period cycling phase during metamorphosis if they are the same cells. Because of this uncertainty, this ontology does not currently record a developmental relationship between the larval and adult DN neurons. subset: cur ! cur synonym: "larval dorsal neuron" RELATED [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00100164 ! larval pacemaker neuron (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001915 name: larval DN1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuron whose soma is located in the dorso-anterior region of the larval brain cortex and that exhibits strong circadian cycling of Period (FBgn0003068) expression starting at about 15 hours post-hatching. There are one or two of these cells per hemisphere." [FlyBase:FBrf0098279] comment: Expression of Period was determined by per-lacZ fusion expression (Kaneko et al., 1997). subset: cur ! cur synonym: "DN1L" EXACT [] synonym: "dorsal neuron-1 larval" EXACT [] synonym: "larval dorsal neuron-1" EXACT [] is_a: FBbt:00001914 ! larval DN period neuron (Drosophila) [Term] id: FBbt:00001916 name: larval DN2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose soma is located in a region lateral and posterior to that of the DN1 neurons in the dorsal region of the larval brain that exhibits strong circadian cycling of Period (FBgn0003068), with expression starting at about 15 hours post-hatching. There are one or two of these cells per hemisphere." [FlyBase:FBrf0098279] comment: Expression of Period was determined by per-lacZ fusion expression (Kaneko et al., 1997). subset: cur ! cur synonym: "DN2L" EXACT [] synonym: "dorsal neuron-2 larval" EXACT [] synonym: "larval dorsal neuron-2" EXACT [] is_a: FBbt:00001914 ! larval DN period neuron (Drosophila) [Term] id: FBbt:00001917 name: larval DN3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Period (FBgn0003068) expressing neuron whose soma is located in the larval brain cortex in a cluster dorso-anterior to the DN2 cluster. Expression of Period in this cell does not show circadian cycling." [FlyBase:FBrf0098279] comment: Expression of Period was determined by per-lacZ fusion expression (Kaneko et al., 1997). subset: cur ! cur synonym: "DN3L" EXACT [] synonym: "dorsal neuron-3 larval" EXACT [] synonym: "larval dorsal neuron-3" EXACT [] is_a: FBbt:00001914 ! larval DN period neuron (Drosophila) [Term] id: FBbt:00001918 name: embryonic/larval sensory nerve namespace: fly_anatomy.ontology def: "Nerve of the embryonic/larval nervous system concerned with transmitting impulses from a sense organ or sensory receptor to the central nervous system." [FBC:SPR, FlyBase:FBrf0075072] is_obsolete: true consider: FBbt:00005105 ! nerve comment: Most nerves carry both sensory and motor projections and in most cases the identity of all projections they do carry is not know. This is not, therefore a reliable means of classification. It would only be possible to support this using auto-classification, which is hard. For these reasons, this class has been obsoleted. If no more specific term can be found, please just use nerve (FBbt:00005105). subset: cur ! cur synonym: "larval sensory nerve" EXACT [] [Term] id: FBbt:00001919 name: embryonic/larval central nervous system (Drosophila) namespace: fly_anatomy.ontology def: "Central nervous system of the embryo/larva." [FBC:SPR] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "larval central nervous system" EXACT [] is_a: UBERON:0001017 ! central nervous system relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00001920 name: embryonic/larval brain (Drosophila) namespace: fly_anatomy.ontology def: "Brain of the embryo/larva." [FBC:SPR] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "larval brain" RELATED [] synonym: "larval supraesophageal ganglion" RELATED [] is_a: UBERON:0000045 ! ganglion is_a: UBERON:0000955 ! brain relationship: develops_from FBbt:00001060 ! embryonic brain (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00001921 name: embryonic/larval supraesophageal connective (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0105282] subset: cur ! cur synonym: "larval supraesophageal connective" EXACT [] is_a: FBbt:00005104 ! connective (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00001922 name: embryonic/larval cervical connective (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval cervical connective" EXACT [] is_a: FBbt:00001921 ! embryonic/larval supraesophageal connective (Drosophila) [Term] id: FBbt:00001924 name: embryonic/larval protocerebral connective (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval protocerebral connective" EXACT [] is_a: FBbt:00001921 ! embryonic/larval supraesophageal connective (Drosophila) [Term] id: FBbt:00001925 name: embryonic/larval protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Protocerebrum of the embryo/larva." [FBC:SPR] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "larval protocerebrum" RELATED [] is_a: FBbt:00003627 ! protocerebrum (Drosophila) relationship: part_of FBbt:00001734 ! larval labral segment (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00001926 name: protocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "neuromere b1" RELATED [] is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001060 ! embryonic brain (Drosophila) [Term] id: FBbt:00001927 name: anterior protocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001926 ! protocerebral neuromere (Drosophila) [Term] id: FBbt:00001928 name: central protocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001926 ! protocerebral neuromere (Drosophila) [Term] id: FBbt:00001929 name: posterior protocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001926 ! protocerebral neuromere (Drosophila) [Term] id: FBbt:00001930 name: embryonic/larval optic lobe (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0052913, FlyBase:FBrf0064800] subset: cur ! cur synonym: "larval optic lobe" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: develops_from FBbt:00000186 ! embryonic optic lobe primordium (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00001931 name: embryonic/larval optic stalk (Drosophila) namespace: fly_anatomy.ontology def: "Receptor axons that arise in the eye disc gain access to the developing optic lobe in the supraesophageal hemisphere in the embryonic/larval brain by way of the optic stalk connecting these two structures. The optic stalk is tube-like and provides a funnel through which not only the imaginal receptor axons reach the brain, but also the axons of Bolwig's nerve (Meinertzhagen and Hanson, 1993)." [FlyBase:FBrf0064800] subset: cur ! cur synonym: "larval optic stalk" EXACT [] is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00001932 name: embryonic/larval optic stalk sheath cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval optic stalk sheath cell" EXACT [] synonym: "lemnoblast cell" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001931 ! embryonic/larval optic stalk (Drosophila) [Term] id: FBbt:00001933 name: larval outer optic anlage (Drosophila) namespace: fly_anatomy.ontology def: "The lateral, outer layer of the larval optic lobe. It consists of proliferating neuroblasts, precursors of neurons of optic lobe structures (in particular of the lamina), with an epithelial arrangement. It is dome shaped and is perforated at its centre by a pore, through which axons of the optic stalk pass (Meinertzhagen and Hanson, 1993). It becomes distinguished from the inner optic anlage during the second half of the first instar period (Meinertzhagen and Hanson, 1993)." [FlyBase:FBrf0052913, FlyBase:FBrf0064800] subset: cur ! cur synonym: "embryonic/larval outer optic anlage" RELATED [] synonym: "larval outer optic anlage" EXACT [] synonym: "opc" RELATED [] synonym: "outer proliferation center" RELATED [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001930 ! embryonic/larval optic lobe (Drosophila) [Term] id: FBbt:00001934 name: embryonic/larval optic neuropil (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0052913] subset: cur ! cur synonym: "larval optic neuropil" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001930 ! embryonic/larval optic lobe (Drosophila) [Term] id: FBbt:00001935 name: medulla anlage (Drosophila) namespace: fly_anatomy.ontology def: "Anlage that is the precursor to the medulla." [FBC:SPR] subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001930 ! embryonic/larval optic lobe (Drosophila) [Term] id: FBbt:00001936 name: medulla neuropil (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001935 ! medulla anlage (Drosophila) [Term] id: FBbt:00001938 name: medulla forming neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast from which the medulla originates." [FBC:SPR] subset: cur ! cur is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001935 ! medulla anlage (Drosophila) [Term] id: FBbt:00001939 name: lamina anlage (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001950 def: "A zone of proliferating neuroblasts that forms at mid third instar, at the lateral rim of the outer optic anlage. Descendants of these neuroblasts form the lamina." [FlyBase:FBrf0052913] comment: May be identical to lamina anlage. subset: cur ! cur synonym: "lateral proliferation zone" EXACT [] synonym: "lpo" EXACT [FlyBase:FBrf0052913] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001933 ! larval outer optic anlage (Drosophila) [Term] id: FBbt:00001940 name: lamina neuropil (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00001939 ! lamina anlage (Drosophila) [Term] id: FBbt:00001942 name: lamina forming neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast from which the lamina develops." [FBC:SPR] subset: cur ! cur is_a: FBbt:00007418 ! outer optic anlage neuroblast (Drosophila) relationship: part_of FBbt:00001939 ! lamina anlage (Drosophila) [Term] id: FBbt:00001943 name: lamina plexus (Drosophila) namespace: fly_anatomy.ontology def: "Region of the lamina where the axons of photoreceptor cells R1-R6 form a dense layer of expanded growth cones nestled between two layers of glial cells (Garrity et al., 1999)." [FlyBase:FBrf0064800, FlyBase:FBrf0108182] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "lamina plexiform layer" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: develops_from FBbt:00001939 ! lamina anlage (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) [Term] id: FBbt:00001944 name: lobula anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001930 ! embryonic/larval optic lobe (Drosophila) [Term] id: FBbt:00001945 name: lobula forming neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast from which the lobula develops." [FBC:SPR] subset: cur ! cur is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001944 ! lobula anlage (Drosophila) [Term] id: FBbt:00001946 name: lobula plate anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001930 ! embryonic/larval optic lobe (Drosophila) [Term] id: FBbt:00001948 name: lobula plate cortex (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the lobula plate." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. subset: cur ! cur synonym: "lobula plate cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00001949 name: medial proliferation zone (Drosophila) namespace: fly_anatomy.ontology def: "Zone of proliferating neuroblasts that forms at the end of the second instar at the medial edge of the outer optic anlage." [FlyBase:FBrf0052913] subset: cur ! cur synonym: "mpo" EXACT [FlyBase:FBrf0052913] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001933 ! larval outer optic anlage (Drosophila) [Term] id: FBbt:00001951 name: larval inner optic anlage (Drosophila) namespace: fly_anatomy.ontology def: "A ribbon-like layer of proliferating neuroblasts in the larval optic lobe. In early larval stages, it is wrapped around the larval antennal nerve. Later it becomes U shaped, with the opening of the U pointing in a dorso-caudal direction. It becomes distinguished from the outer optic anlage during the second half of the first instar period (Meinertzhagen and Hanson, 1993)." [FlyBase:FBrf0052913] subset: cur ! cur synonym: "embryonic/larval inner optic anlage" EXACT [] synonym: "inner proliferation center" RELATED [] synonym: "ipc" RELATED [] synonym: "larval inner optic anlage" EXACT [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001930 ! embryonic/larval optic lobe (Drosophila) [Term] id: FBbt:00001952 name: central plug (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0052913] subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001951 ! larval inner optic anlage (Drosophila) [Term] id: FBbt:00001953 name: dorsal proliferation zone (Drosophila) namespace: fly_anatomy.ontology def: "A zone of proliferating neuroblasts at the posterior shank of the inner optic anlage." [FlyBase:FBrf0052913] comment: May be precursor of medial-most part of the lobula complex (Hofbauer and Campos-Ortega, 1990). subset: cur ! cur synonym: "dpi" RELATED [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001951 ! larval inner optic anlage (Drosophila) [Term] id: FBbt:00001954 name: inner proliferation zone (Drosophila) namespace: fly_anatomy.ontology def: "A lateral zone of proliferating neuroblasts arising from the central part of the inner optic anlage near the Bolwig's nerve. Neuroblasts segregate from the anlage at the beginning of the third larval instar, and are displaced towards the point of entry of the Bolwig's nerve and then separate from each other by newly formed fiber bundles (\"Zellenstrange\"). One group will form the central plug, and the distal group are pushed up against the posterior face of the lamina surrounding the Bolwig's nerve." [FlyBase:FBrf0052913, FlyBase:FBrf0064800] subset: cur ! cur synonym: "IPZ" RELATED [] synonym: "inner proliferative zone" EXACT [FlyBase:FBrf0111426] synonym: "ipi" RELATED [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00001951 ! larval inner optic anlage (Drosophila) [Term] id: FBbt:00001955 name: inner optic anlage neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Any neuroblast (FBbt:00005146) that is part of some larval inner optic anlage (FBbt:00001951)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "inner anlage neuroblast" EXACT [] is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001951 ! larval inner optic anlage (Drosophila) [Term] id: FBbt:00001957 name: embryonic/larval deuterocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Deuterocerebrum of the embryo/larva." [FBC:SPR] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "larval deutocerebrum" RELATED [] is_a: FBbt:00003923 ! deuterocerebrum (Drosophila) relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00001958 name: deuterocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "deutocerebral neuromere" EXACT [] synonym: "neuromere b2" RELATED [] is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001060 ! embryonic brain (Drosophila) [Term] id: FBbt:00001959 name: anterior deuterocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "anterior deutocerebral neuromere" EXACT [] synonym: "neuromere b2" RELATED [] is_a: FBbt:00001958 ! deuterocerebral neuromere (Drosophila) [Term] id: FBbt:00001960 name: central deuterocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "central deutocerebral neuromere" EXACT [] synonym: "neuromere b2" RELATED [] is_a: FBbt:00001958 ! deuterocerebral neuromere (Drosophila) [Term] id: FBbt:00001961 name: posterior deuterocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "neuromere b2" RELATED [] synonym: "posterior deutocerebral neuromere" EXACT [] is_a: FBbt:00001958 ! deuterocerebral neuromere (Drosophila) [Term] id: FBbt:00001962 name: embryonic/larval tritocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Tritocerebrum of the embryonic/larval brain." [FBC:SPR] subset: cur ! cur is_a: FBbt:00003999 ! tritocerebrum (Drosophila) relationship: part_of FBbt:00001736 ! larval intercalary segment (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00001963 name: tritocerebral neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "neuromere b3" RELATED [] is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001060 ! embryonic brain (Drosophila) [Term] id: FBbt:00001964 name: supraesophageal nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00001965 name: embryonic/larval antennal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve that carries axons from larval sense organs in the head, including the dorsal organ, to the larval antennal lobe." [FBC:DOS] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "SNIII" EXACT [FlyBase:FBrf0075072] synonym: "larval antennal nerve" EXACT [] synonym: "sensory nerve III" EXACT [FlyBase:FBrf0075072] is_a: FBbt:00001964 ! supraesophageal nerve (Drosophila) is_a: FBbt:00006045 ! antennal nerve (Drosophila) is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) [Term] id: FBbt:00001966 name: embryonic/larval labral nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve of the larval head that carries axons from the epiphysis, pharyngeal chordotonal organ, dorsopharyngeal organ, hypopharyngeal organ and the laterohypopharyngeal organ (Schmidt-Ott et al., 1994)." [FlyBase:FBrf0075072, FlyBase:FBrf0147119] subset: cur ! cur synonym: "LbrN" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "SNI" EXACT [FlyBase:FBrf0075072] synonym: "labral nerve" RELATED [] synonym: "sensory nerve I" EXACT [FlyBase:FBrf0075072] is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) is_a: FBbt:00100327 ! labral nerve (Drosophila) relationship: part_of FBbt:00001734 ! larval labral segment (Drosophila) [Term] id: FBbt:00001967 name: Bolwig nerve (Drosophila) namespace: fly_anatomy.ontology def: "Larval nerve connecting the Bolwig's organ to the optic lobe." [FlyBase:FBrf0064800] subset: cur ! cur synonym: "Bolwig's nerve" EXACT [] synonym: "SNII" EXACT [FlyBase:FBrf0075072] synonym: "sensory nerve II" EXACT [FlyBase:FBrf0075072] is_a: FBbt:00001964 ! supraesophageal nerve (Drosophila) is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) [Term] id: FBbt:00001968 name: bipolar neuron of Bolwig nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "bipolar neuron of Bolwig's nerve" EXACT [] is_a: FBbt:00005212 ! bipolar dendrite neuron (Drosophila) [Term] id: FBbt:00001969 name: papilla nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve of the larval head that carries axons from the dorsolateral papilla." [FlyBase:FBrf0075072] subset: cur ! cur synonym: "SNIV" EXACT [FlyBase:FBrf0075072] synonym: "pan" EXACT [] synonym: "sensory nerve IV" EXACT [FlyBase:FBrf0075072] is_a: FBbt:00001964 ! supraesophageal nerve (Drosophila) is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00001970 name: hypopharyngeal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve of the larval head that carries axons from the hypopharyngeal sense organ. It is joined by a branch carrying axons from the latero-hypopharyngeal organ. It joins the labral nerve before it enters the tritocerebrum." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001964 ! supraesophageal nerve (Drosophila) is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00001972 name: subesophageal ganglion neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of the subesophageal ganglion." [FBC:SPR] subset: cur ! cur synonym: "SEG neuron" RELATED [] synonym: "SOG neuron" RELATED [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00001973 name: mandibular neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001738 ! larval mandibular segment (Drosophila) [Term] id: FBbt:00001974 name: labial neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001740 ! larval labial segment (Drosophila) [Term] id: FBbt:00001975 name: maxillary neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00001739 ! larval maxillary segment (Drosophila) [Term] id: FBbt:00001976 name: subesophageal nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00001977 name: lateropharyngeal nerve (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "SNV" EXACT [FlyBase:FBrf0075072] synonym: "lpn" EXACT [] synonym: "sensory nerve V" EXACT [FlyBase:FBrf0075072] is_a: FBbt:00001976 ! subesophageal nerve (Drosophila) is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) relationship: part_of FBbt:00001974 ! labial neuromere (Drosophila) [Term] id: FBbt:00001978 name: embryonic/larval labial nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve carrying axons from the larval head, including the hypophysis and the labial organ, to the larval subesophageal ganglion." [FlyBase:FBrf0075072, FlyBase:FBrf0201176] subset: cur ! cur synonym: "LbN" EXACT [FlyBase:FBrf0201176] synonym: "SNVII" EXACT [FlyBase:FBrf0075072] synonym: "lan" EXACT [] synonym: "larval labial nerve" EXACT [] synonym: "sensory nerve VII" EXACT [FlyBase:FBrf0075072] is_a: FBbt:00001976 ! subesophageal nerve (Drosophila) is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) is_a: FBbt:00100333 ! labial nerve (Drosophila) relationship: part_of FBbt:00001974 ! labial neuromere (Drosophila) [Term] id: FBbt:00001979 name: embryonic/larval maxillary nerve (Drosophila) namespace: fly_anatomy.ontology def: "Larval subesophageal nerve carrying axons from the larval head, including the terminal organ and the ventral organ, terminating in the subesophageal ganglion." [FlyBase:FBrf0089570, FlyBase:FBrf0201176] subset: cur ! cur synonym: "MN" RELATED [] synonym: "SNVI" EXACT [FlyBase:FBrf0075072] synonym: "larval maxillary nerve" EXACT [] synonym: "mxn" EXACT [] synonym: "sensory nerve VI" EXACT [FlyBase:FBrf0075072] is_a: FBbt:00001976 ! subesophageal nerve (Drosophila) is_a: FBbt:00007318 ! embryonic/larval head nerve (Drosophila) relationship: part_of FBbt:00001975 ! maxillary neuromere (Drosophila) [Term] id: FBbt:00001980 name: serotonergic SE1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell body is located in one of 3 clusters on either side of the ventral midline in the ventral nerve cord of the mandibular segment. Axons from this cluster cross the midline in the mandibular segment. In the adult they are located adjacent to the esophagus foramen." [FlyBase:FBrf0048551] subset: cur ! cur synonym: "SE1 neuron" EXACT [] synonym: "subesophageal ganglion SE neuron 1" EXACT [] synonym: "subesophageal ganglion neuron 1" EXACT [] is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00100358 ! subesophageal ganglion serotonergic SE neuron (Drosophila) relationship: part_of FBbt:00000012 ! mandibular segment (Drosophila) [Term] id: FBbt:00001981 name: FMRFamide SE2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired (Kolhekar et al., 1997) FMRFamide expressing interneuron of the subesophageal neuromere (Schneider et al., 1993). They are located more anteriorly than the FMRFamide SE3 cells (Schneider et al., 1993)." [FlyBase:FBrf0059164, FlyBase:FBrf0092591] comment: Disambiguation: P.Taghert has confirmed that the FMRFamide-expressing SE2 cells are a distinct, non-overlapping cell population to the serotonergic SE2 cells (FBbt:00100391). subset: cur ! cur synonym: "FMRF SE2 neuron" EXACT [] synonym: "SE2 neuron" BROAD [FlyBase:FBrf0059164, FlyBase:FBrf0092591] is_a: CL:0000099 ! interneuron is_a: FBbt:00001972 ! subesophageal ganglion neuron (Drosophila) [Term] id: FBbt:00001982 name: serotonergic SE3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell body is located in one of 3 clusters on either side of the ventral midline in the ventral nerve cord of the labial segment. Axons from this cluster cross the midline in the labial segment. In the adult they are located in the posterior subesophageal ganglion." [FlyBase:FBrf0048551] comment: Valles and White (1988) comment that they originally thought the SE3 cluster was prothoracic and not part of the subesophageal ganglion, but reviewed their opinion based on further study. Disambiguation: P.Taghert has confirmed that the serotonin-expressing SE3 cells are a distinct, non-overlapping cell population to the FMRFamide expressing SE3 cells. subset: cur ! cur synonym: "SE3 neuron" RELATED [] synonym: "subesophageal ganglion SE neuron 3" EXACT [] synonym: "subesophageal ganglion neuron 3" EXACT [] is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00100358 ! subesophageal ganglion serotonergic SE neuron (Drosophila) relationship: part_of FBbt:00000014 ! labial segment (Drosophila) [Term] id: FBbt:00001983 name: thoracic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron that is part of the thorax." [FBC:SPR] subset: cur ! cur is_a: FBbt:00001972 ! subesophageal ganglion neuron (Drosophila) [Term] id: FBbt:00001984 name: T1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic neuron (FBbt:00001983) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "prothoracic neuron" RELATED [] is_a: FBbt:00001983 ! thoracic neuron (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00001985 name: T2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic neuron (FBbt:00001983) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "mesothoracic neuron" RELATED [] is_a: FBbt:00001983 ! thoracic neuron (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00001986 name: T3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron located in the third thoracic ganglion of the larva, and ventromedial and posterior in the metathoracic neuromere of the adult (Valles and White, 1988). There are two cell bodies in each cluster." [FlyBase:FBrf0048551] subset: cur ! cur synonym: "metathoracic neuron" RELATED [] is_a: FBbt:00100360 ! thoracic T neuron (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00001987 name: abdominal neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that is part of some abdomen (FBbt:00000020)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00001988 name: A1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal neuron (FBbt:00001987) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 1 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00001989 name: A2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal neuron (FBbt:00001987) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 2 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00001990 name: A3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal neuron (FBbt:00001987) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 3 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00001991 name: A4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal neuron (FBbt:00001987) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 4 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00001992 name: A5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal neuron (FBbt:00001987) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 5 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00001993 name: A6 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal neuron (FBbt:00001987) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 6 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00001994 name: A7 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal neuron (FBbt:00001987) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 7 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00001995 name: A8 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that is part of some abdominal segment 8 (FBbt:00000029)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 8 neuron" RELATED [] is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00000029 ! abdominal segment 8 (Drosophila) [Term] id: FBbt:00001996 name: transverse nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00001997 name: intersegmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Larval nerve of segments T1-A7. It exits the ventral ganglion at a position adjacent to the anterior commissure as a fascicle which shares a glial sheath with the segmental nerve (posterior fascicle). This combined nerve runs dorsally until it encounters the ventral oblique musculature, at which point it splits into separate segmental and intersegmental nerves with their own glial sheaths. The intersegmental nerve runs dorsally along a path anterior to the segmental nerve. It branches to various sensory clusters and muscles." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "ISN" EXACT [] synonym: "anterior fascicle" EXACT [] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00001134 ! presumptive embryonic/larval peripheral nervous system (Drosophila) [Term] id: FBbt:00001998 name: anterior fascicle sensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any sensory neuron (FBbt:00005124) that fasciculates with some intersegmental nerve (FBbt:00001997)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00001999 name: desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a dorsal external sense (des) organ of the abdominal, mesothoracic, metathoracic or prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002000 name: desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a dorsal external sense (des) organ of the abdominal, mesothoracic, metathoracic or prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002001 name: desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a dorsal external sense (des) organ of the abdominal, mesothoracic, metathoracic or prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002002 name: desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a dorsal external sense (des) organ of the abdominal, mesothoracic, metathoracic or prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002003 name: desE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Most dorsal of the sensory neurons of the peripheral nervous system that innervate a dorsal external sense (des) organ of the mesothoracic, metathoracic or prothoracic segment of the embryo/larva (Dambly-Chaudiere and Ghysen, 1986)." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002004 name: desn neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002005 name: des1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002006 name: des2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuron innervating the dorsal Kolbchen of the embryonic/larval prothorax (Dambly-Chaudiere and Ghysen, 1986). There are two such neurons innervating each dorsal Kolbchen." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur synonym: "dk" BROAD [FlyBase:FBrf0045359] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00100326 ! prothoracic dorsal Kolbchen dbd (Drosophila) [Term] id: FBbt:00002007 name: des3 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002008 name: des3+1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002009 name: des3+1+1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002010 name: dch3 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002011 name: dch3/1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002012 name: lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a lateral external sense (les) organ of the abdominal, mesothoracic, metathoracic or prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur synonym: "les A" RELATED [] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002013 name: lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a lateral external sense (les) organ of the abdominal, mesothoracic, metathoracic or prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur synonym: "les B" RELATED [] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002014 name: lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a lateral external sense (les) organ of the abdominal, mesothoracic, metathoracic or prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur synonym: "les C" RELATED [] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002015 name: lesD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the peripheral nervous system that innervates a lateral external sense (les) organ of the prothoracic segment of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur synonym: "les D" RELATED [] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002016 name: les3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuron innervating the lateral Kolbchen of the embryonic/larval meso- or metathoracic segment (Dambly-Chaudiere and Ghysen, 1986). There are three such neurons innervating each dorsal Kolbchen." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur synonym: "les 3" RELATED [] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00100361 ! lateral Kolbchen lbd (Drosophila) [Term] id: FBbt:00002017 name: les4 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002018 name: lch3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Scolopidial neuron of laterally located triscolopidial chordotonal organ lch3." [FlyBase:FBrf0041814] subset: cur ! cur relationship: part_of FBbt:00007238 ! triscolopidial chordotonal organ (Drosophila) [Term] id: FBbt:00002019 name: lch5 neuron (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002377 def: "Neuron of abdominal lateral pentascolopidial chordotonal organ lch5. Fasciculates in the intersegmental nerve." [FlyBase:FBrf0041814] subset: cur ! cur synonym: "abdominal lch5 neuron" EXACT [] synonym: "lch5x" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002020 name: spA neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002021 name: spB neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "sso" BROAD [FlyBase:FBrf0089570] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002022 name: spC neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "sso" BROAD [FlyBase:FBrf0089570] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002023 name: spD neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "sso" BROAD [FlyBase:FBrf0089570] is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002024 name: dorsal multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any multidendritic neuron (FBbt:00005209) that is part of some embryonic/larval thoracic/abdominal dorsal sensory cluster (FBbt:00007296)." [FBC:auto_generated_definition] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002025 name: dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell-body is located ventrally in the dorsal group of dendritic arborization neurons (da). It has long primary and secondary branches marked by spiked protrusions (1-20um) along most of its length (Grueber et al., 2002)." [FlyBase:FBrf0089570, FlyBase:FBrf0148966, FlyBase:FBrf0183734, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] comment: Following the classification system proposed by Grueber et al., (2002), ddaA is a class III neuron. subset: cur ! cur is_a: FBbt:00002024 ! dorsal multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002026 name: dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body is located ventrally in the dorsal group of dendritic arborization neurons, slightly dorsal to the dorsal multidendritic neuron ddaA. It has long and sinuous dendrites with few higher order branches (Grueber et al., 2002)." [FlyBase:FBrf0089570, FlyBase:FBrf0183734, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] comment: Following the classification system proposed by Grueber et al., (2002), ddaB is a class II neuron. subset: cur ! cur is_a: FBbt:00002024 ! dorsal multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002027 name: dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body is located centrally in the dorsal group of dendritic arborization neurons. It presents a highly complex dendritic arborization pattern (Grueber et al., 2002)." [FlyBase:FBrf0089570, FlyBase:FBrf0148966, FlyBase:FBrf0183734, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] comment: Following the classification system proposed by Grueber et al., (2002), ddaC is a class IV neuron. subset: cur ! cur is_a: FBbt:00002024 ! dorsal multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002028 name: dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body is located dorsally in the dorsal group of dendritic arborization neurons. It presents a long single dendrite from which originate anterior-directed secondary dendrites (Grueber et al., 2002)." [FlyBase:FBrf0089570, FlyBase:FBrf0148966, FlyBase:FBrf0183734, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] comment: There is some confusion in the literature between ddaF and ddaD (see Orgogozo and Grueber, 2005, for details). The nomenclature used here is according to Grueber et al., 2002. However, other papers (notably Sweeney et al., 2002) refer to Grueber's ddaD as ddaF and vice-versa. subset: cur ! cur is_a: FBbt:00002024 ! dorsal multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002029 name: dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body is located dorsally in the dorsal group of dendritic arborization neurons, usually posterior to dorsal multidendritic neuron ddaD. It presents a long single dendrite from which originate anterior-directed secondary dendrites (Grueber et al., 2002)." [FlyBase:FBrf0089570, FlyBase:FBrf0148966, FlyBase:FBrf0183734, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] comment: Following the classification system proposed by Grueber et al., (2002), ddaE is a class I neuron. subset: cur ! cur is_a: FBbt:00002024 ! dorsal multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002030 name: lateral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any multidendritic neuron (FBbt:00005209) that is part of some embryonic/larval thoracic/abdominal lateral sensory cluster (FBbt:00007297)." [FBC:auto_generated_definition] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002031 name: lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron ventrally located in the lateral complex of the second and third thoracic segments of the larva. Its long and sinuous dendrites are simply branched, but are symmetrically bifurcating." [FlyBase:FBrf0089570, FlyBase:FBrf0148966, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] comment: Following the classification system proposed by Grueber et al., (2002), ldaA is a class II neuron. subset: cur ! cur synonym: "lda" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] is_a: FBbt:00002030 ! lateral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002032 name: lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002030 ! lateral multidendritic neuron (Drosophila) is_a: FBbt:00007274 ! class III dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002033 name: lateral multidendritic neuron ldaC (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002030 ! lateral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002034 name: lateral multidendritic neuron ldaD (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002030 ! lateral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) [Term] id: FBbt:00002037 name: segmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Larval nerve of segments T1-A7. It exits the ventral ganglion at a position adjacent to the anterior commissure as a fascicle which shares a glial sheath with the segmental nerve (posterior fascicle). This combined nerve runs dorsally until it encounters the ventral oblique musculature, at which point it splits into separate segmental and intersegmental nerves with their own glial sheaths. The segmental nerve runs dorsally along a path posterior to the intersegmental nerve between the musculature and the epidermis. It branches to various sensory clusters and muscles." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "SN" EXACT [] synonym: "posterior fascicle" RELATED [] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00001134 ! presumptive embryonic/larval peripheral nervous system (Drosophila) [Term] id: FBbt:00002038 name: posterior fascicle sensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any sensory neuron (FBbt:00005124) that fasciculates with some segmental nerve (FBbt:00002037)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00002039 name: vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the ventral chordotonal organ of the larval abdomen or thorax." [FBC:DOS] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002040 name: vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002039 ! vch neuron (Drosophila) [Term] id: FBbt:00002041 name: vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval abdominal segments 1-7, the pro-, meta- or mesothoracic segments (Dambly-Chaudiere and Ghysen, 1986). In the abdominal segments it is located ventral to vesB." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002042 name: vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval abdominal segments 1-7, the pro-, meta- or mesothoracic segments (Dambly-Chaudiere and Ghysen, 1986). In the abdominal segments it is located dorsal to vesA and ventral to vesC." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002043 name: vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval abdominal segments 1-7, the pro-, meta- or mesothoracic segments (Dambly-Chaudiere and Ghysen, 1986). In the abdominal segments it is located dorsal to vesB." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002044 name: vesD neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002045 name: vesE neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002046 name: vesM neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002047 name: ves3 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002048 name: v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval abdominal segments 1-7, the pro-, meta- or mesothoracic segments (Dambly-Chaudiere and Ghysen, 1986). In the abdominal segments it is located dorsal to vesC, and ventral to v'esB. In the thoracic segments 2 and 3 it is located ventral to the cluster of vesA-E neurons, but is located anterior to it in thoracic segment T1." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002049 name: v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval abdominal segments 1-7, the pro-, meta- or mesothoracic segments (Dambly-Chaudiere and Ghysen, 1986). In the abdominal segments it is located anterodorsal to v'esA. In the thoracic segments it is located ventral to v'es3." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002050 name: v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval abdominal segments 1-7 (Dambly-Chaudiere and Ghysen, 1986). It is located posterioventral to lesA." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002051 name: v'es3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval pro-, meta- or mesothoracic segments (Dambly-Chaudiere and Ghysen, 1986). It is located dorsal to v'esB neuron." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur synonym: "ves3 neuron" RELATED [] is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002052 name: v''esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval prothoracic segment (Dambly-Chaudiere and Ghysen, 1986). It lies on the anterior border, ventral to v''esB." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002053 name: v''esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory PNS neuron of embryonic/larval prothoracic segment (Dambly-Chaudiere and Ghysen, 1986). It lies on the anterior border, dorsal to v''esA." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00002054 name: ventral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any multidendritic neuron (FBbt:00005209) that is part of some embryonic/larval thoracic/abdominal ventral sensory cluster (FBbt:00007295)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) relationship: part_of FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) [Term] id: FBbt:00002055 name: ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "One of four dendritic arborizing neurons found in each larval thoracic/abdominal ventral sensory cluster. Its axon fasciculates with the segmental nerve." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) [Term] id: FBbt:00002056 name: ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "One of four dendritic arborizing neurons found in each larval thoracic/abdominal ventral sensory cluster. Its axon fasciculates with the segmental nerve." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) [Term] id: FBbt:00002057 name: ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "One of four dendritic arborizing neurons found in each larval thoracic/abdominal ventral sensory cluster. Its axon fasciculates with the segmental nerve." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) [Term] id: FBbt:00002058 name: ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "One of four dendritic arborizing neurons found in each larval thoracic/abdominal ventral sensory cluster. Its axon fasciculates with the segmental nerve." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) [Term] id: FBbt:00002062 name: subesophageal commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001020 ! commissure [Term] id: FBbt:00002063 name: prothoracic nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any nerve (FBbt:00005105) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002064 name: prothoracic intersegmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental nerve of the embryonic/larval prothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "ISN" BROAD [] synonym: "prothoracic anterior fascicle" EXACT [] is_a: FBbt:00001997 ! intersegmental nerve (Drosophila) is_a: FBbt:00002063 ! prothoracic nerve (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002065 name: prothoracic anterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002066 name: prothoracic desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desA neuron (FBbt:00001999) that is part of some prothoracic dorsal sensillum campaniformium dc1 (FBbt:00002731) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001999 ! desA neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002731 ! prothoracic dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002067 name: prothoracic desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desB neuron (FBbt:00002000) that is part of some prothoracic dorsal sensillum trichodeum dh1 (FBbt:00002729) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002000 ! desB neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002729 ! prothoracic dorsal sensillum trichodeum dh1 (Drosophila) [Term] id: FBbt:00002068 name: prothoracic desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desC neuron (FBbt:00002001) that is part of some prothoracic dorsal sensillum campaniformium dc2 (FBbt:00002732) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002001 ! desC neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002732 ! prothoracic dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002069 name: prothoracic desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desD neuron (FBbt:00002002) that is part of some prothoracic dorsal sensillum campaniformium dc3 (FBbt:00002733) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002002 ! desD neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002733 ! prothoracic dorsal sensillum campaniformium dc3 (Drosophila) [Term] id: FBbt:00002070 name: prothoracic desE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desE neuron (FBbt:00002003) that is part of some prothoracic dorsal sensillum trichodeum dh2 (FBbt:00002730) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002003 ! desE neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002730 ! prothoracic dorsal sensillum trichodeum dh2 (Drosophila) [Term] id: FBbt:00002071 name: prothoracic lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesA neuron (FBbt:00002012) that is part of some prothoracic lateral sensillum campaniformium lc1 (FBbt:00002736) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002012 ! lesA neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002736 ! prothoracic lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002072 name: prothoracic lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesB neuron (FBbt:00002013) that is part of some prothoracic lateral sensillum trichodeum lh1 (FBbt:00002735) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002013 ! lesB neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002735 ! prothoracic lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002073 name: prothoracic lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesC neuron (FBbt:00002014) that is part of some prothoracic lateral sensillum campaniformium lc2 (FBbt:00002737) and that fasciculates with some prothoracic intersegmental nerve (FBbt:00002064)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002014 ! lesC neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002737 ! prothoracic lateral sensillum campaniformium lc2 (Drosophila) [Term] id: FBbt:00002074 name: prothoracic lch3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Lateral triscolopidial chordotonal organ of the embryonic/larval prothorax (Campos-Ortega and Hartenstein, 1985)." [FlyBase:FBrf0041814] subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002018 ! lch3 neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) relationship: part_of FBbt:00002738 ! prothoracic lateral triscolopidial chordotonal organ lch3 (Drosophila) [Term] id: FBbt:00002075 name: prothoracic dorsal/lateral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002065 ! prothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00002076 name: prothoracic dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002025 ! dorsal multidendritic neuron ddaA (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002077 name: prothoracic dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002026 ! dorsal multidendritic neuron ddaB (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002078 name: prothoracic dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002027 ! dorsal multidendritic neuron ddaC (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002079 name: prothoracic dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002028 ! dorsal multidendritic neuron ddaD (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002080 name: prothoracic dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002029 ! dorsal multidendritic neuron ddaE (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002081 name: prothoracic lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002031 ! lateral multidendritic neuron ldaA (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002082 name: prothoracic lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002032 ! lateral multidendritic neuron ldaB (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002083 name: prothoracic lateral multidendritic neuron ldaC (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002033 ! lateral multidendritic neuron ldaC (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002084 name: prothoracic lateral multidendritic neuron ldaD (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002034 ! lateral multidendritic neuron ldaD (Drosophila) is_a: FBbt:00002075 ! prothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002085 name: prothoracic segmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Segmental nerve of the prothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "SN" BROAD [] synonym: "prothoracic posterior fascicle" EXACT [] is_a: FBbt:00002037 ! segmental nerve (Drosophila) is_a: FBbt:00002063 ! prothoracic nerve (Drosophila) [Term] id: FBbt:00002086 name: prothoracic posterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002087 name: prothoracic vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesA neuron (FBbt:00002041) that is part of some prothoracic ventral sensillum campaniformium vc1 (FBbt:00002740) and that fasciculates with some prothoracic segmental nerve (FBbt:00002085) and that is part of some prothoracic slit papilla sensillum px (FBbt:00002726)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002041 ! vesA neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002726 ! prothoracic slit papilla sensillum px (Drosophila) relationship: part_of FBbt:00002740 ! prothoracic ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002088 name: prothoracic vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesB neuron (FBbt:00002042) that is part of some prothoracic ventral sensillum campaniformium vc2 (FBbt:00002741) and that fasciculates with some prothoracic segmental nerve (FBbt:00002085) and that is part of some prothoracic slit papilla sensillum py (FBbt:00002727)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002042 ! vesB neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002727 ! prothoracic slit papilla sensillum py (Drosophila) relationship: part_of FBbt:00002741 ! prothoracic ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002089 name: prothoracic vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesC neuron (FBbt:00002043) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002043 ! vesC neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002090 name: prothoracic vesD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesD neuron (FBbt:00002044) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002044 ! vesD neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002091 name: prothoracic vesE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesE neuron (FBbt:00002045) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002045 ! vesE neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002092 name: prothoracic v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v'esA neuron (FBbt:00002048) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002048 ! v'esA neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002093 name: prothoracic v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v'esB neuron (FBbt:00002049) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002049 ! v'esB neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002094 name: prothoracic v'es3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v'es3 neuron (FBbt:00002051) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002051 ! v'es3 neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002095 name: prothoracic v''esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v''esA neuron (FBbt:00002052) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002052 ! v''esA neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002096 name: prothoracic v''esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v''esB neuron (FBbt:00002053) that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002053 ! v''esB neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002097 name: prothoracic vch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vch1 neuron (FBbt:00002040) that is part of some prothoracic ventral monoscolopidial chordotonal organ vch1 (FBbt:00002742) and that fasciculates with some prothoracic segmental nerve (FBbt:00002085)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002040 ! vch1 neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) relationship: part_of FBbt:00002742 ! prothoracic ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002098 name: prothoracic ventral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "A multidendritic neuron of the ventral cluster sensory cluster of the larval prothoracic segment. There are four of these per cluster, all of which have axons that fasciculate with the prothoracic segmental nerve." [FlyBase:FBrf0089570] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00002086 ! prothoracic posterior fascicle neuron (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002099 name: prothoracic ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaA (FBbt:00002055) that is part of some embryonic/larval prothoracic ventral sensory cluster (FBbt:00007306)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002055 ! ventral multidendritic neuron vdaA (Drosophila) is_a: FBbt:00002098 ! prothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002100 name: prothoracic ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaB (FBbt:00002056) that is part of some embryonic/larval prothoracic ventral sensory cluster (FBbt:00007306)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002056 ! ventral multidendritic neuron vdaB (Drosophila) is_a: FBbt:00002098 ! prothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002101 name: prothoracic ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaC (FBbt:00002057) that is part of some embryonic/larval prothoracic ventral sensory cluster (FBbt:00007306)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002057 ! ventral multidendritic neuron vdaC (Drosophila) is_a: FBbt:00002098 ! prothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002102 name: prothoracic ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaD (FBbt:00002058) that is part of some embryonic/larval prothoracic ventral sensory cluster (FBbt:00007306)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002058 ! ventral multidendritic neuron vdaD (Drosophila) is_a: FBbt:00002098 ! prothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002103 name: mesothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00002104 name: mesothoracic intersegmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental nerve of the mesothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "ISN" BROAD [] synonym: "mesothoracic anterior fascicle" EXACT [] is_a: FBbt:00001997 ! intersegmental nerve (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00002105 name: mesothoracic anterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002106 name: mesothoracic desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desA neuron (FBbt:00001999) that is part of some mesothoracic dorsal sensillum campaniformium dc1 (FBbt:00002749) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001999 ! desA neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002749 ! mesothoracic dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002107 name: mesothoracic desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desB neuron (FBbt:00002000) that is part of some mesothoracic dorsal sensillum trichodeum dh1 (FBbt:00002747) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002000 ! desB neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002747 ! mesothoracic dorsal sensillum trichodeum dh1 (Drosophila) [Term] id: FBbt:00002108 name: mesothoracic desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desC neuron (FBbt:00002001) that is part of some mesothoracic dorsal sensillum campaniformium dc2 (FBbt:00002750) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002001 ! desC neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002750 ! mesothoracic dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002109 name: mesothoracic desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desD neuron (FBbt:00002002) that is part of some mesothoracic dorsal sensillum campaniformium dc3 (FBbt:00002751) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002002 ! desD neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002751 ! mesothoracic dorsal sensillum campaniformium dc3 (Drosophila) [Term] id: FBbt:00002110 name: mesothoracic desE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desE neuron (FBbt:00002003) that is part of some mesothoracic dorsal sensillum trichodeum dh2 (FBbt:00002748) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002003 ! desE neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002748 ! mesothoracic dorsal sensillum trichodeum dh2 (Drosophila) [Term] id: FBbt:00002111 name: mesothoracic lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesA neuron (FBbt:00002012) that is part of some mesothoracic lateral sensillum campaniformium lc1 (FBbt:00002755) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002012 ! lesA neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002755 ! mesothoracic lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002112 name: mesothoracic lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesB neuron (FBbt:00002013) that is part of some mesothoracic lateral sensillum trichodeum lh1 (FBbt:00002754) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002013 ! lesB neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002754 ! mesothoracic lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002113 name: mesothoracic lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesC neuron (FBbt:00002014) that is part of some mesothoracic lateral sensillum campaniformium lc2 (FBbt:00002756) and that fasciculates with some mesothoracic intersegmental nerve (FBbt:00002104)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002014 ! lesC neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002756 ! mesothoracic lateral sensillum campaniformium lc2 (Drosophila) [Term] id: FBbt:00002114 name: mesothoracic les3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron innervating the mesothoracic lateral Kolbchen of the embryo/larva (Dambly-Chaudiere and Ghysen, 1986)." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002016 ! les3 neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) relationship: part_of FBbt:00002753 ! mesothoracic lateral Kolbchen lbd (Drosophila) [Term] id: FBbt:00002115 name: mesothoracic dorsal/lateral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002105 ! mesothoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00002116 name: mesothoracic dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002025 ! dorsal multidendritic neuron ddaA (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002117 name: mesothoracic dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002026 ! dorsal multidendritic neuron ddaB (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002118 name: mesothoracic dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002027 ! dorsal multidendritic neuron ddaC (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002119 name: mesothoracic dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002028 ! dorsal multidendritic neuron ddaD (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002120 name: mesothoracic dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002029 ! dorsal multidendritic neuron ddaE (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002121 name: mesothoracic lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002031 ! lateral multidendritic neuron ldaA (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002122 name: mesothoracic lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002032 ! lateral multidendritic neuron ldaB (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002123 name: mesothoracic lateral multidendritic neuron ldaC (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002033 ! lateral multidendritic neuron ldaC (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002124 name: mesothoracic lateral multidendritic neuron ldaD (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002034 ! lateral multidendritic neuron ldaD (Drosophila) is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002125 name: mesothoracic segmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Segmental nerve of the mesothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "SN" BROAD [] synonym: "mesothoracic posterior fascicle" EXACT [] is_a: FBbt:00002037 ! segmental nerve (Drosophila) is_a: FBbt:00002103 ! mesothoracic nerve (Drosophila) [Term] id: FBbt:00002126 name: mesothoracic posterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002127 name: mesothoracic vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesA neuron (FBbt:00002041) that is part of some mesothoracic ventral sensillum campaniformium vc1 (FBbt:00002758) and that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002041 ! vesA neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002758 ! mesothoracic ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002128 name: mesothoracic vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesB neuron (FBbt:00002042) that is part of some mesothoracic ventral sensillum campaniformium vc2 (FBbt:00002759) and that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002042 ! vesB neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002759 ! mesothoracic ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002129 name: mesothoracic vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesC neuron (FBbt:00002043) that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002043 ! vesC neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002130 name: mesothoracic vesD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesD neuron (FBbt:00002044) that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002044 ! vesD neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002131 name: mesothoracic vesE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesE neuron (FBbt:00002045) that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002045 ! vesE neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002132 name: mesothoracic v'es3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "V'es3 neuron of the mesothoracic segment. It is located dorsal to the v'esB neuron." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002051 ! v'es3 neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002133 name: mesothoracic v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v'esA neuron (FBbt:00002048) that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002048 ! v'esA neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002134 name: mesothoracic v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v'esB neuron (FBbt:00002049) that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002049 ! v'esB neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002135 name: mesothoracic vch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vch1 neuron (FBbt:00002040) that is part of some mesothoracic ventral monoscolopidial chordotonal organ vch1 (FBbt:00002760) and that fasciculates with some mesothoracic segmental nerve (FBbt:00002125)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002040 ! vch1 neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) relationship: part_of FBbt:00002760 ! mesothoracic ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002136 name: mesothoracic ventral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "A multidendritic neuron of the ventral cluster sensory cluster of the larval mesothoracic segment. There are four of these per cluster, all of which have axons that fasciculate with the mesothoracic segmental nerve." [FlyBase:FBrf0089570] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00002126 ! mesothoracic posterior fascicle neuron (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002137 name: mesothoracic ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaA (FBbt:00002055) that is part of some embryonic/larval mesothoracic ventral sensory cluster (FBbt:00007307)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002055 ! ventral multidendritic neuron vdaA (Drosophila) is_a: FBbt:00002136 ! mesothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002138 name: mesothoracic ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaB (FBbt:00002056) that is part of some embryonic/larval mesothoracic ventral sensory cluster (FBbt:00007307)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002056 ! ventral multidendritic neuron vdaB (Drosophila) is_a: FBbt:00002136 ! mesothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002139 name: mesothoracic ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaC (FBbt:00002057) that is part of some embryonic/larval mesothoracic ventral sensory cluster (FBbt:00007307)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002057 ! ventral multidendritic neuron vdaC (Drosophila) is_a: FBbt:00002136 ! mesothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002140 name: mesothoracic ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaD (FBbt:00002058) that is part of some embryonic/larval mesothoracic ventral sensory cluster (FBbt:00007307)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002058 ! ventral multidendritic neuron vdaD (Drosophila) is_a: FBbt:00002136 ! mesothoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002141 name: metathoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002142 name: metathoracic intersegmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental nerve of the metathoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "ISN" BROAD [] synonym: "metathoracic anterior fascicle" EXACT [] is_a: FBbt:00001997 ! intersegmental nerve (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002143 name: metathoracic anterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002144 name: metathoracic desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desA neuron (FBbt:00001999) that is part of some mesothoracic dorsal sensillum campaniformium dc1 (FBbt:00002749) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001999 ! desA neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002749 ! mesothoracic dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002145 name: metathoracic desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desB neuron (FBbt:00002000) that is part of some metathoracic dorsal sensillum trichodeum dh1 (FBbt:00002765) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002000 ! desB neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002765 ! metathoracic dorsal sensillum trichodeum dh1 (Drosophila) [Term] id: FBbt:00002146 name: metathoracic desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desC neuron (FBbt:00002001) that is part of some metathoracic dorsal sensillum campaniformium dc2 (FBbt:00002768) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002001 ! desC neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002768 ! metathoracic dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002147 name: metathoracic desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desD neuron (FBbt:00002002) that is part of some metathoracic dorsal sensillum campaniformium dc3 (FBbt:00002769) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002002 ! desD neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002769 ! metathoracic dorsal sensillum campaniformium dc3 (Drosophila) [Term] id: FBbt:00002148 name: metathoracic desE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any desE neuron (FBbt:00002003) that is part of some metathoracic dorsal sensillum trichodeum dh2 (FBbt:00002766) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002003 ! desE neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002766 ! metathoracic dorsal sensillum trichodeum dh2 (Drosophila) [Term] id: FBbt:00002149 name: metathoracic lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesA neuron (FBbt:00002012) that is part of some metathoracic lateral sensillum campaniformium lc1 (FBbt:00002773) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002012 ! lesA neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002773 ! metathoracic lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002150 name: metathoracic lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesB neuron (FBbt:00002013) that is part of some metathoracic lateral sensillum trichodeum lh1 (FBbt:00002772) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002013 ! lesB neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002772 ! metathoracic lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002151 name: metathoracic lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lesC neuron (FBbt:00002014) that is part of some metathoracic lateral sensillum campaniformium lc2 (FBbt:00002774) and that fasciculates with some metathoracic intersegmental nerve (FBbt:00002142)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002014 ! lesC neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002774 ! metathoracic lateral sensillum campaniformium lc2 (Drosophila) [Term] id: FBbt:00002152 name: metathoracic les3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron innervating the metathoracic lateral Kolbchen of the embryo/larva (Dambly-Chaudiere and Ghysen, 1986)." [FlyBase:FBrf0045359, FlyBase:FBrf0046281, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002016 ! les3 neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) relationship: part_of FBbt:00002771 ! metathoracic lateral Kolbchen lbd (Drosophila) [Term] id: FBbt:00002153 name: metathoracic dorsal/lateral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002143 ! metathoracic anterior fascicle neuron (Drosophila) is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00002154 name: metathoracic dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002025 ! dorsal multidendritic neuron ddaA (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002155 name: metathoracic dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002026 ! dorsal multidendritic neuron ddaB (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002156 name: metathoracic dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002027 ! dorsal multidendritic neuron ddaC (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002157 name: metathoracic dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002028 ! dorsal multidendritic neuron ddaD (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002158 name: metathoracic dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002029 ! dorsal multidendritic neuron ddaE (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) [Term] id: FBbt:00002159 name: metathoracic lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002031 ! lateral multidendritic neuron ldaA (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007304 ! embryonic/larval metathoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002160 name: metathoracic lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002032 ! lateral multidendritic neuron ldaB (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007304 ! embryonic/larval metathoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002161 name: metathoracic lateral multidendritic neuron ldaC (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002033 ! lateral multidendritic neuron ldaC (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) relationship: part_of FBbt:00007304 ! embryonic/larval metathoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002162 name: metathoracic lateral multidendritic neuron ldaD (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002034 ! lateral multidendritic neuron ldaD (Drosophila) is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) relationship: part_of FBbt:00007304 ! embryonic/larval metathoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002163 name: metathoracic segmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Segmental nerve of the metathoracic segment." [FlyBase:FBrf0089570] comment: Maybe - segmental nerve. subset: cur ! cur synonym: "SN" BROAD [] synonym: "metathoracic posterior fascicle" EXACT [] is_a: FBbt:00002037 ! segmental nerve (Drosophila) is_a: FBbt:00002141 ! metathoracic nerve (Drosophila) [Term] id: FBbt:00002164 name: metathoracic posterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002165 name: metathoracic vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesA neuron (FBbt:00002041) that is part of some metathoracic ventral sensillum campaniformium vc1 (FBbt:00002776) and that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002041 ! vesA neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002776 ! metathoracic ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002166 name: metathoracic vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesB neuron (FBbt:00002042) that is part of some metathoracic ventral sensillum campaniformium vc2 (FBbt:00002777) and that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002042 ! vesB neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002777 ! metathoracic ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002167 name: metathoracic vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesC neuron (FBbt:00002043) that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002043 ! vesC neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002168 name: metathoracic vesD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesD neuron (FBbt:00002044) that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002044 ! vesD neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002169 name: metathoracic vesE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vesE neuron (FBbt:00002045) that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002045 ! vesE neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002170 name: metathoracic v'es3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "V'es3 neuron of the metathoracic segment. It is located dorsal to the v'esB neuron." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] subset: cur ! cur is_a: FBbt:00002051 ! v'es3 neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002171 name: metathoracic v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v'esA neuron (FBbt:00002048) that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002048 ! v'esA neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002172 name: metathoracic v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any v'esB neuron (FBbt:00002049) that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002049 ! v'esB neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002173 name: metathoracic vch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any vch1 neuron (FBbt:00002040) that is part of some metathoracic ventral monoscolopidial chordotonal organ vch1 (FBbt:00002778) and that fasciculates with some metathoracic segmental nerve (FBbt:00002163)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002040 ! vch1 neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) relationship: part_of FBbt:00002778 ! metathoracic ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002174 name: metathoracic ventral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "A multidendritic neuron of the ventral cluster sensory cluster of the larval metathoracic segment. There are four of these per cluster, all of which have axons that fasciculate with the metathoracic segmental nerve." [FlyBase:FBrf0089570] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00002164 ! metathoracic posterior fascicle neuron (Drosophila) relationship: part_of FBbt:00007308 ! embryonic/larval metathoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002175 name: metathoracic ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaA (FBbt:00002055) that is part of some embryonic/larval metathoracic ventral sensory cluster (FBbt:00007308)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002055 ! ventral multidendritic neuron vdaA (Drosophila) is_a: FBbt:00002174 ! metathoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007308 ! embryonic/larval metathoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002176 name: metathoracic ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaB (FBbt:00002056) that is part of some embryonic/larval metathoracic ventral sensory cluster (FBbt:00007308)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002056 ! ventral multidendritic neuron vdaB (Drosophila) is_a: FBbt:00002174 ! metathoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007308 ! embryonic/larval metathoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002177 name: metathoracic ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaC (FBbt:00002057) that is part of some embryonic/larval metathoracic ventral sensory cluster (FBbt:00007308)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002057 ! ventral multidendritic neuron vdaC (Drosophila) is_a: FBbt:00002174 ! metathoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007308 ! embryonic/larval metathoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002178 name: metathoracic ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any ventral multidendritic neuron vdaD (FBbt:00002058) that is part of some embryonic/larval metathoracic ventral sensory cluster (FBbt:00007308)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002058 ! ventral multidendritic neuron vdaD (Drosophila) is_a: FBbt:00002174 ! metathoracic ventral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007308 ! embryonic/larval metathoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002179 name: abdominal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any nerve (FBbt:00005105) that is part of some abdomen (FBbt:00000020)." [FBC:auto_generated_definition, FlyBase:FBrf0054490] subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00002180 name: abdominal transverse nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any transverse nerve (FBbt:00001996) that is part of some larval abdomen (FBbt:00001746)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "segment boundary nerve" RELATED [] is_a: FBbt:00001996 ! transverse nerve (Drosophila) is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00002181 name: abdominal intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007425 def: "Bipolar multidendritic neuron in the lateral sensory cluster of larval abdominal segments 1-7. Located at the anterior segment boundary, it emits two long dendritic branches along muscle 3 (Williams and Shepherd, 1999)." [FlyBase:FBrf0089570, FlyBase:FBrf0108300, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lbd] subset: cur ! cur synonym: "abdominal intersegmental bidendritic neuron isbd" EXACT [FlyBase:FBrf0089570] synonym: "abdominal lateral bipolar neuron lbd" EXACT [] synonym: "intersegmental bipolar neuron" EXACT [] synonym: "isbp" EXACT [FlyBase:FBrf0089570] synonym: "lateral bipolar md neuron" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lbd] synonym: "ldb" EXACT [] is_a: FBbt:00005212 ! bipolar dendrite neuron (Drosophila) [Term] id: FBbt:00002182 name: abdominal 1 intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental bidendritic neuron isbp (FBbt:00002181) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 1 intersegmental bidendritic neuron isbd" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002181 ! abdominal intersegmental bidendritic neuron isbp (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002183 name: abdominal 2 intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental bidendritic neuron isbp (FBbt:00002181) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 2 intersegmental bidendritic neuron isbd" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002181 ! abdominal intersegmental bidendritic neuron isbp (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002184 name: abdominal 3 intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental bidendritic neuron isbp (FBbt:00002181) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 3 intersegmental bidendritic neuron isbd" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002181 ! abdominal intersegmental bidendritic neuron isbp (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002185 name: abdominal 4 intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental bidendritic neuron isbp (FBbt:00002181) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 4 intersegmental bidendritic neuron isbd" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002181 ! abdominal intersegmental bidendritic neuron isbp (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002186 name: abdominal 5 intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental bidendritic neuron isbp (FBbt:00002181) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 5 intersegmental bidendritic neuron isbd" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002181 ! abdominal intersegmental bidendritic neuron isbp (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002187 name: abdominal 6 intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental bidendritic neuron isbp (FBbt:00002181) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 6 intersegmental bidendritic neuron isbd" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002181 ! abdominal intersegmental bidendritic neuron isbp (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002188 name: abdominal 7 intersegmental bidendritic neuron isbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental bidendritic neuron isbp (FBbt:00002181) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 7 intersegmental bidendritic neuron isbd" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002181 ! abdominal intersegmental bidendritic neuron isbp (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002189 name: abdominal intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Trachea associated multidendritic neuron located anteriorly in the lateral sensory cluster of larval abdominal segments 1-7." [FlyBase:FBrf0047289, FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ltd] comment: Referred to by Bodmer and Jan, 1987, and FlyPNS as ltd. Confusingly, Campos-Ortega and Hartenstein, 1997, use the name ltd to refer to a different multi-dendritic neuron, ldaB. subset: cur ! cur synonym: "ltd" RELATED [FlyBase:FBrf0047289, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ltd] is_a: FBbt:00005214 ! tracheal innervating neuron (Drosophila) [Term] id: FBbt:00002190 name: abdominal 1 intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental trachea-associated neuron istd (FBbt:00002189) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002189 ! abdominal intersegmental trachea-associated neuron istd (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002191 name: abdominal 2 intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental trachea-associated neuron istd (FBbt:00002189) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002189 ! abdominal intersegmental trachea-associated neuron istd (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002192 name: abdominal 3 intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental trachea-associated neuron istd (FBbt:00002189) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002189 ! abdominal intersegmental trachea-associated neuron istd (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002193 name: abdominal 4 intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental trachea-associated neuron istd (FBbt:00002189) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002189 ! abdominal intersegmental trachea-associated neuron istd (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002194 name: abdominal 5 intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental trachea-associated neuron istd (FBbt:00002189) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002189 ! abdominal intersegmental trachea-associated neuron istd (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002195 name: abdominal 6 intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental trachea-associated neuron istd (FBbt:00002189) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002189 ! abdominal intersegmental trachea-associated neuron istd (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002196 name: abdominal 7 intersegmental trachea-associated neuron istd (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal intersegmental trachea-associated neuron istd (FBbt:00002189) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002189 ! abdominal intersegmental trachea-associated neuron istd (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002197 name: abdominal segmental nerve (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002450 def: "Segmental nerve found in the abdominal segments of the embryo/larva." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "SN" BROAD [] synonym: "SNa" NARROW [] synonym: "SNb" NARROW [] synonym: "SNc" NARROW [] synonym: "SNd" NARROW [] synonym: "abdominal posterior fascicle" EXACT [] synonym: "abdominal segmental nerve" EXACT [] is_a: FBbt:00002037 ! segmental nerve (Drosophila) is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002198 name: abdominal segment motor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron located in an abdominal segment of the embryo/larva." [FBC:SPR, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001987 ! abdominal neuron (Drosophila) is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002199 name: abdominal RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any RP1 neuron (FBbt:00001452) that is part of some larval abdominal segment (FBbt:00001747)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001452 ! RP1 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002200 name: abdominal 1 RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP1 neuron (FBbt:00002199) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002199 ! abdominal RP1 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002201 name: abdominal 2 RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP1 neuron (FBbt:00002199) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002199 ! abdominal RP1 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002202 name: abdominal 3 RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP1 neuron (FBbt:00002199) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002199 ! abdominal RP1 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002203 name: abdominal 4 RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP1 neuron (FBbt:00002199) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002199 ! abdominal RP1 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002204 name: abdominal 5 RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP1 neuron (FBbt:00002199) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002199 ! abdominal RP1 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002205 name: abdominal 6 RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP1 neuron (FBbt:00002199) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002199 ! abdominal RP1 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002206 name: abdominal 7 RP1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP1 neuron (FBbt:00002199) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002199 ! abdominal RP1 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002207 name: abdominal RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any RP2 neuron (FBbt:00001453) that is part of some larval abdominal segment (FBbt:00001747)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001453 ! RP2 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002208 name: abdominal 1 RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP2 neuron (FBbt:00002207) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002207 ! abdominal RP2 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002209 name: abdominal 2 RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP2 neuron (FBbt:00002207) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002207 ! abdominal RP2 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002210 name: abdominal 3 RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP2 neuron (FBbt:00002207) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002207 ! abdominal RP2 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002211 name: abdominal 4 RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP2 neuron (FBbt:00002207) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002207 ! abdominal RP2 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002212 name: abdominal 5 RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP2 neuron (FBbt:00002207) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002207 ! abdominal RP2 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002213 name: abdominal 6 RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP2 neuron (FBbt:00002207) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002207 ! abdominal RP2 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002214 name: abdominal 7 RP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP2 neuron (FBbt:00002207) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002207 ! abdominal RP2 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002215 name: abdominal RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any RP3 neuron (FBbt:00001455) that is part of some larval abdominal segment (FBbt:00001747)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001455 ! RP3 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002216 name: abdominal 1 RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP3 neuron (FBbt:00002215) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002215 ! abdominal RP3 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002217 name: abdominal 2 RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP3 neuron (FBbt:00002215) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002215 ! abdominal RP3 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002218 name: abdominal 3 RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP3 neuron (FBbt:00002215) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002215 ! abdominal RP3 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002219 name: abdominal 4 RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP3 neuron (FBbt:00002215) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002215 ! abdominal RP3 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002220 name: abdominal 5 RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP3 neuron (FBbt:00002215) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002215 ! abdominal RP3 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002221 name: abdominal 6 RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP3 neuron (FBbt:00002215) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002215 ! abdominal RP3 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002222 name: abdominal 7 RP3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP3 neuron (FBbt:00002215) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002215 ! abdominal RP3 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002223 name: abdominal RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any RP4 neuron (FBbt:00001456) that is part of some larval abdominal segment (FBbt:00001747)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001456 ! RP4 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002224 name: abdominal 1 RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP4 neuron (FBbt:00002223) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002223 ! abdominal RP4 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002225 name: abdominal 2 RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP4 neuron (FBbt:00002223) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002223 ! abdominal RP4 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002226 name: abdominal 3 RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP4 neuron (FBbt:00002223) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002223 ! abdominal RP4 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002227 name: abdominal 4 RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP4 neuron (FBbt:00002223) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002223 ! abdominal RP4 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002228 name: abdominal 5 RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP4 neuron (FBbt:00002223) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002223 ! abdominal RP4 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002229 name: abdominal 6 RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP4 neuron (FBbt:00002223) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002223 ! abdominal RP4 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002230 name: abdominal 7 RP4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP4 neuron (FBbt:00002223) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002223 ! abdominal RP4 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002231 name: abdominal RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any RP5 neuron (FBbt:00001457) that is part of some larval abdominal segment (FBbt:00001747)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001457 ! RP5 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002232 name: abdominal 1 RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP5 neuron (FBbt:00002231) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002231 ! abdominal RP5 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002233 name: abdominal 2 RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP5 neuron (FBbt:00002231) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002231 ! abdominal RP5 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002234 name: abdominal 3 RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP5 neuron (FBbt:00002231) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002231 ! abdominal RP5 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002235 name: abdominal 4 RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP5 neuron (FBbt:00002231) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002231 ! abdominal RP5 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002236 name: abdominal 5 RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP5 neuron (FBbt:00002231) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002231 ! abdominal RP5 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002237 name: abdominal 6 RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP5 neuron (FBbt:00002231) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002231 ! abdominal RP5 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002238 name: abdominal 7 RP5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal RP5 neuron (FBbt:00002231) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0053781, FlyBase:FBrf0064795] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002231 ! abdominal RP5 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002239 name: abdominal VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001593 ! VUM1 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002240 name: abdominal 1 VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM1 neuron (FBbt:00002239) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002239 ! abdominal VUM1 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002241 name: abdominal 2 VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM1 neuron (FBbt:00002239) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002239 ! abdominal VUM1 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002242 name: abdominal 3 VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM1 neuron (FBbt:00002239) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002239 ! abdominal VUM1 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002243 name: abdominal 4 VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM1 neuron (FBbt:00002239) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002239 ! abdominal VUM1 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002244 name: abdominal 5 VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM1 neuron (FBbt:00002239) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002239 ! abdominal VUM1 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002245 name: abdominal 6 VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM1 neuron (FBbt:00002239) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002239 ! abdominal VUM1 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002246 name: abdominal 7 VUM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM1 neuron (FBbt:00002239) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002239 ! abdominal VUM1 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002247 name: abdominal VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001594 ! VUM2 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002248 name: abdominal 1 VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM2 neuron (FBbt:00002247) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002247 ! abdominal VUM2 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002249 name: abdominal 2 VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM2 neuron (FBbt:00002247) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002247 ! abdominal VUM2 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002250 name: abdominal 3 VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM2 neuron (FBbt:00002247) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002247 ! abdominal VUM2 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002251 name: abdominal 4 VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM2 neuron (FBbt:00002247) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002247 ! abdominal VUM2 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002252 name: abdominal 5 VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM2 neuron (FBbt:00002247) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002247 ! abdominal VUM2 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002253 name: abdominal 6 VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM2 neuron (FBbt:00002247) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002247 ! abdominal VUM2 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002254 name: abdominal 7 VUM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM2 neuron (FBbt:00002247) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002247 ! abdominal VUM2 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002255 name: abdominal VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001595 ! VUM3 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002256 name: abdominal 1 VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM3 neuron (FBbt:00002255) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002255 ! abdominal VUM3 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002257 name: abdominal 2 VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM3 neuron (FBbt:00002255) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002255 ! abdominal VUM3 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002258 name: abdominal 3 VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM3 neuron (FBbt:00002255) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002255 ! abdominal VUM3 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002259 name: abdominal 4 VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM3 neuron (FBbt:00002255) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002255 ! abdominal VUM3 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002260 name: abdominal 5 VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM3 neuron (FBbt:00002255) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002255 ! abdominal VUM3 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002261 name: abdominal 6 VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM3 neuron (FBbt:00002255) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002255 ! abdominal VUM3 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002262 name: abdominal 7 VUM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal VUM3 neuron (FBbt:00002255) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002255 ! abdominal VUM3 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002263 name: abdominal Z neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001589 ! Z neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002264 name: abdominal 1 Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal Z neuron (FBbt:00002263) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002263 ! abdominal Z neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002265 name: abdominal 2 Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal Z neuron (FBbt:00002263) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002263 ! abdominal Z neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002266 name: abdominal 3 Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal Z neuron (FBbt:00002263) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002263 ! abdominal Z neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002267 name: abdominal 4 Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal Z neuron (FBbt:00002263) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002263 ! abdominal Z neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002268 name: abdominal 5 Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal Z neuron (FBbt:00002263) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002263 ! abdominal Z neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002269 name: abdominal 6 Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal Z neuron (FBbt:00002263) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002263 ! abdominal Z neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002270 name: abdominal 7 Z neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal Z neuron (FBbt:00002263) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002263 ! abdominal Z neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002271 name: abdominal V neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001590 ! V neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002272 name: abdominal 1 V neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal V neuron (FBbt:00002271) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002271 ! abdominal V neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002273 name: abdominal 2 V neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal V neuron (FBbt:00002271) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002271 ! abdominal V neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002274 name: abdominal 3 V neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal V neuron (FBbt:00002271) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002271 ! abdominal V neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002275 name: abdominal 4 V neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal V neuron (FBbt:00002271) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002271 ! abdominal V neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002276 name: abdominal 5 V neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal V neuron (FBbt:00002271) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002271 ! abdominal V neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002277 name: abdominal 6 V neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal V neuron (FBbt:00002271) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002271 ! abdominal V neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002278 name: abdominal 7 V neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal V neuron (FBbt:00002271) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002271 ! abdominal V neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002279 name: abdominal M neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001591 ! M neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002280 name: abdominal 1 M neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal M neuron (FBbt:00002279) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002279 ! abdominal M neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002281 name: abdominal 2 M neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal M neuron (FBbt:00002279) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002279 ! abdominal M neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002282 name: abdominal 3 M neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal M neuron (FBbt:00002279) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002279 ! abdominal M neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002283 name: abdominal 4 M neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal M neuron (FBbt:00002279) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002279 ! abdominal M neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002284 name: abdominal 5 M neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal M neuron (FBbt:00002279) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002279 ! abdominal M neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002285 name: abdominal 6 M neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal M neuron (FBbt:00002279) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002279 ! abdominal M neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002286 name: abdominal 7 M neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal M neuron (FBbt:00002279) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002279 ! abdominal M neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002287 name: abdominal lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001562 ! lateral ipsisegmental neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002288 name: abdominal 1 lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral ipsisegmental neuron (FBbt:00002287) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002287 ! abdominal lateral ipsisegmental neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002289 name: abdominal 2 lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral ipsisegmental neuron (FBbt:00002287) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002287 ! abdominal lateral ipsisegmental neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002290 name: abdominal 3 lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral ipsisegmental neuron (FBbt:00002287) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002287 ! abdominal lateral ipsisegmental neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002291 name: abdominal 4 lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral ipsisegmental neuron (FBbt:00002287) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002287 ! abdominal lateral ipsisegmental neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002292 name: abdominal 5 lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral ipsisegmental neuron (FBbt:00002287) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002287 ! abdominal lateral ipsisegmental neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002293 name: abdominal 6 lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral ipsisegmental neuron (FBbt:00002287) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002287 ! abdominal lateral ipsisegmental neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002294 name: abdominal 7 lateral ipsisegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral ipsisegmental neuron (FBbt:00002287) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002287 ! abdominal lateral ipsisegmental neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002295 name: abdominal ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001563 ! ventral intersegmental neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002296 name: abdominal 1 ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral intersegmental neuron (FBbt:00002295) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002295 ! abdominal ventral intersegmental neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002297 name: abdominal 2 ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral intersegmental neuron (FBbt:00002295) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002295 ! abdominal ventral intersegmental neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002298 name: abdominal 3 ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral intersegmental neuron (FBbt:00002295) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002295 ! abdominal ventral intersegmental neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002299 name: abdominal 4 ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral intersegmental neuron (FBbt:00002295) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002295 ! abdominal ventral intersegmental neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002300 name: abdominal 5 ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral intersegmental neuron (FBbt:00002295) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002295 ! abdominal ventral intersegmental neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002301 name: abdominal 6 ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral intersegmental neuron (FBbt:00002295) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002295 ! abdominal ventral intersegmental neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002302 name: abdominal 7 ventral intersegmental neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral intersegmental neuron (FBbt:00002295) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002295 ! abdominal ventral intersegmental neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002303 name: abdominal U1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001565 ! U1 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002304 name: abdominal 1 U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U1 neuron (FBbt:00002303) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002303 ! abdominal U1 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002305 name: abdominal 2 U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U1 neuron (FBbt:00002303) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002303 ! abdominal U1 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002306 name: abdominal 3 U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U1 neuron (FBbt:00002303) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002303 ! abdominal U1 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002307 name: abdominal 4 U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U1 neuron (FBbt:00002303) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002303 ! abdominal U1 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002308 name: abdominal 5 U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U1 neuron (FBbt:00002303) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002303 ! abdominal U1 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002309 name: abdominal 6 U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U1 neuron (FBbt:00002303) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002303 ! abdominal U1 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002310 name: abdominal 7 U1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U1 neuron (FBbt:00002303) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002303 ! abdominal U1 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002311 name: abdominal U2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001566 ! U2 neuron (Drosophila) is_a: FBbt:00002198 ! abdominal segment motor neuron (Drosophila) [Term] id: FBbt:00002312 name: abdominal 1 U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U2 neuron (FBbt:00002311) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002311 ! abdominal U2 neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002313 name: abdominal 2 U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U2 neuron (FBbt:00002311) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002311 ! abdominal U2 neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002314 name: abdominal 3 U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U2 neuron (FBbt:00002311) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002311 ! abdominal U2 neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002315 name: abdominal 4 U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U2 neuron (FBbt:00002311) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002311 ! abdominal U2 neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002316 name: abdominal 5 U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U2 neuron (FBbt:00002311) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002311 ! abdominal U2 neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002317 name: abdominal 6 U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U2 neuron (FBbt:00002311) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002311 ! abdominal U2 neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002318 name: abdominal 7 U2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal U2 neuron (FBbt:00002311) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002311 ! abdominal U2 neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002319 name: abdominal intersegmental nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any intersegmental nerve (FBbt:00001997) that is part of some larval abdominal segment (FBbt:00001747)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "ISN" RELATED [] synonym: "abdominal anterior fascicle" RELATED [] is_a: FBbt:00001997 ! intersegmental nerve (Drosophila) is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002320 name: abdominal anterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some abdominal intersegmental nerve (FBbt:00002319)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002321 name: abdominal desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron associated either with abdominal dorsal sensillum trichodeum dh1 or with abdominal dorsal sensillum trichodeum dh2. Fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] comment: From the current literature on abdominal desA and desB neurons (02/2010), it is not clear whether dh1 (the smaller, anteriorly located abdominal dorsal sensillum trichodeum) is innervated by desA or desB. Similarly with dh2 (the larger abdominal dorsal sensillum trichodeum). sr110210. subset: cur ! cur synonym: "b+st" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "des2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "desA2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "desB" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] synonym: "dh2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] synonym: "h4" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] synonym: "sensory hair F" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00001999 ! desA neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00002322 name: abdominal 1 desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desA neuron (FBbt:00002321) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002321 ! abdominal desA neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002323 name: abdominal 2 desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desA neuron (FBbt:00002321) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002321 ! abdominal desA neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002324 name: abdominal 3 desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desA neuron (FBbt:00002321) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002321 ! abdominal desA neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002325 name: abdominal 4 desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desA neuron (FBbt:00002321) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002321 ! abdominal desA neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002326 name: abdominal 5 desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desA neuron (FBbt:00002321) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002321 ! abdominal desA neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002327 name: abdominal 6 desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desA neuron (FBbt:00002321) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002321 ! abdominal desA neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002328 name: abdominal 7 desA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desA neuron (FBbt:00002321) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002321 ! abdominal desA neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002329 name: abdominal desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron associated either with abdominal dorsal sensillum trichodeum dh1 or with abdominal dorsal sensillum trichodeum dh2. Fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] comment: From the current literature on abdominal desA and desB neurons (02/2010), it is not clear whether dh1 (the smaller, anteriorly located abdominal dorsal sensillum trichodeum) is innervated by desA or desB. Similarly with dh2 (the larger abdominal dorsal sensillum trichodeum). sr110210. subset: cur ! cur synonym: "b+st" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] synonym: "desA" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] synonym: "dh1" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] synonym: "sensory hair F" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dh1] is_a: FBbt:00002000 ! desB neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00002330 name: abdominal 1 desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desB neuron (FBbt:00002329) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002329 ! abdominal desB neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002331 name: abdominal 2 desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desB neuron (FBbt:00002329) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002329 ! abdominal desB neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002332 name: abdominal 3 desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desB neuron (FBbt:00002329) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002329 ! abdominal desB neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002333 name: abdominal 4 desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desB neuron (FBbt:00002329) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002329 ! abdominal desB neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002334 name: abdominal 5 desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desB neuron (FBbt:00002329) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002329 ! abdominal desB neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002335 name: abdominal 6 desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desB neuron (FBbt:00002329) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002329 ! abdominal desB neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002336 name: abdominal 7 desB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desB neuron (FBbt:00002329) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002329 ! abdominal desB neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002337 name: abdominal desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of abdominal dorsal sensillum campaniformium dc1. Fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] subset: cur ! cur synonym: "dc1" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] synonym: "dp1" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] synonym: "p8" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] synonym: "s" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] is_a: FBbt:00002001 ! desC neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002338 name: abdominal 1 desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desC neuron (FBbt:00002337) that is part of some abdominal 1 dorsal sensillum campaniformium dc1 (FBbt:00002800)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002337 ! abdominal desC neuron (Drosophila) relationship: part_of FBbt:00002800 ! abdominal 1 dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002339 name: abdominal 2 desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desC neuron (FBbt:00002337) that is part of some abdominal 2 dorsal sensillum campaniformium dc1 (FBbt:00002801)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002337 ! abdominal desC neuron (Drosophila) relationship: part_of FBbt:00002801 ! abdominal 2 dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002340 name: abdominal 3 desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desC neuron (FBbt:00002337) that is part of some abdominal 3 dorsal sensillum campaniformium dc1 (FBbt:00002802)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002337 ! abdominal desC neuron (Drosophila) relationship: part_of FBbt:00002802 ! abdominal 3 dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002341 name: abdominal 4 desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desC neuron (FBbt:00002337) that is part of some abdominal 4 dorsal sensillum campaniformium dc1 (FBbt:00002803)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002337 ! abdominal desC neuron (Drosophila) relationship: part_of FBbt:00002803 ! abdominal 4 dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002342 name: abdominal 5 desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desC neuron (FBbt:00002337) that is part of some abdominal 5 dorsal sensillum campaniformium dc1 (FBbt:00002804)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002337 ! abdominal desC neuron (Drosophila) relationship: part_of FBbt:00002804 ! abdominal 5 dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002343 name: abdominal 6 desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desC neuron (FBbt:00002337) that is part of some abdominal 6 dorsal sensillum campaniformium dc1 (FBbt:00002805)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002337 ! abdominal desC neuron (Drosophila) relationship: part_of FBbt:00002805 ! abdominal 6 dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002344 name: abdominal 7 desC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desC neuron (FBbt:00002337) that is part of some abdominal 7 dorsal sensillum campaniformium dc1 (FBbt:00002806)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002337 ! abdominal desC neuron (Drosophila) relationship: part_of FBbt:00002806 ! abdominal 7 dorsal sensillum campaniformium dc1 (Drosophila) [Term] id: FBbt:00002345 name: abdominal desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of abdominal dorsal sensillum campaniformium dc2. Fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp2] subset: cur ! cur synonym: "b" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "dc2" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "dp2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "p9" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00002002 ! desD neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002346 name: abdominal 1 desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desD neuron (FBbt:00002345) that is part of some abdominal 1 dorsal sensillum campaniformium dc2 (FBbt:00002808)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002345 ! abdominal desD neuron (Drosophila) relationship: part_of FBbt:00002808 ! abdominal 1 dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002347 name: abdominal 2 desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desD neuron (FBbt:00002345) that is part of some abdominal 2 dorsal sensillum campaniformium dc2 (FBbt:00002809)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002345 ! abdominal desD neuron (Drosophila) relationship: part_of FBbt:00002809 ! abdominal 2 dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002348 name: abdominal 3 desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desD neuron (FBbt:00002345) that is part of some abdominal 3 dorsal sensillum campaniformium dc2 (FBbt:00002810)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002345 ! abdominal desD neuron (Drosophila) relationship: part_of FBbt:00002810 ! abdominal 3 dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002349 name: abdominal 4 desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desD neuron (FBbt:00002345) that is part of some abdominal 4 dorsal sensillum campaniformium dc2 (FBbt:00002811)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002345 ! abdominal desD neuron (Drosophila) relationship: part_of FBbt:00002811 ! abdominal 4 dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002350 name: abdominal 5 desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desD neuron (FBbt:00002345) that is part of some abdominal 5 dorsal sensillum campaniformium dc2 (FBbt:00002812)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002345 ! abdominal desD neuron (Drosophila) relationship: part_of FBbt:00002812 ! abdominal 5 dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002351 name: abdominal 6 desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desD neuron (FBbt:00002345) that is part of some abdominal 6 dorsal sensillum campaniformium dc2 (FBbt:00002813)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002345 ! abdominal desD neuron (Drosophila) relationship: part_of FBbt:00002813 ! abdominal 6 dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002352 name: abdominal 7 desD neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal desD neuron (FBbt:00002345) that is part of some abdominal 7 dorsal sensillum campaniformium dc2 (FBbt:00002814)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002345 ! abdominal desD neuron (Drosophila) relationship: part_of FBbt:00002814 ! abdominal 7 dorsal sensillum campaniformium dc2 (Drosophila) [Term] id: FBbt:00002353 name: abdominal lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of abdominal lateral sensillum trichodeum lh2. Fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] subset: cur ! cur synonym: "b" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "h1" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "lh2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "sensory hair C" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00002012 ! lesA neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002354 name: abdominal 1 lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesA neuron (FBbt:00002353) that is part of some abdominal 1 lateral sensillum trichodeum lh1 (FBbt:00002840)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002353 ! abdominal lesA neuron (Drosophila) relationship: part_of FBbt:00002840 ! abdominal 1 lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002355 name: abdominal 2 lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesA neuron (FBbt:00002353) that is part of some abdominal 2 lateral sensillum trichodeum lh1 (FBbt:00002841)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002353 ! abdominal lesA neuron (Drosophila) relationship: part_of FBbt:00002841 ! abdominal 2 lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002356 name: abdominal 3 lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesA neuron (FBbt:00002353) that is part of some abdominal 3 lateral sensillum trichodeum lh1 (FBbt:00002842)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002353 ! abdominal lesA neuron (Drosophila) relationship: part_of FBbt:00002842 ! abdominal 3 lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002357 name: abdominal 4 lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesA neuron (FBbt:00002353) that is part of some abdominal 4 lateral sensillum trichodeum lh1 (FBbt:00002843)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002353 ! abdominal lesA neuron (Drosophila) relationship: part_of FBbt:00002843 ! abdominal 4 lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002358 name: abdominal 5 lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesA neuron (FBbt:00002353) that is part of some abdominal 5 lateral sensillum trichodeum lh1 (FBbt:00002844)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002353 ! abdominal lesA neuron (Drosophila) relationship: part_of FBbt:00002844 ! abdominal 5 lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002359 name: abdominal 6 lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesA neuron (FBbt:00002353) that is part of some abdominal 6 lateral sensillum trichodeum lh1 (FBbt:00002845)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002353 ! abdominal lesA neuron (Drosophila) relationship: part_of FBbt:00002845 ! abdominal 6 lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002360 name: abdominal 7 lesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesA neuron (FBbt:00002353) that is part of some abdominal 7 lateral sensillum trichodeum lh1 (FBbt:00002846)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002353 ! abdominal lesA neuron (Drosophila) relationship: part_of FBbt:00002846 ! abdominal 7 lateral sensillum trichodeum lh1 (Drosophila) [Term] id: FBbt:00002361 name: abdominal lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of abdominal lateral sensillum campaniformium lc1. Fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lp2] subset: cur ! cur synonym: "lc1" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lp2] synonym: "lp2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lp2] synonym: "p7" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lp2] is_a: FBbt:00002013 ! lesB neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002362 name: abdominal 1 lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesB neuron (FBbt:00002361) that is part of some abdominal 1 lateral sensillum campaniformium lc1 (FBbt:00002856)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002361 ! abdominal lesB neuron (Drosophila) relationship: part_of FBbt:00002856 ! abdominal 1 lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002363 name: abdominal 2 lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesB neuron (FBbt:00002361) that is part of some abdominal 2 lateral sensillum campaniformium lc1 (FBbt:00002857)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002361 ! abdominal lesB neuron (Drosophila) relationship: part_of FBbt:00002857 ! abdominal 2 lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002364 name: abdominal 3 lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesB neuron (FBbt:00002361) that is part of some abdominal 3 lateral sensillum campaniformium lc1 (FBbt:00002858)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002361 ! abdominal lesB neuron (Drosophila) relationship: part_of FBbt:00002858 ! abdominal 3 lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002365 name: abdominal 4 lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesB neuron (FBbt:00002361) that is part of some abdominal 4 lateral sensillum campaniformium lc1 (FBbt:00002859)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002361 ! abdominal lesB neuron (Drosophila) relationship: part_of FBbt:00002859 ! abdominal 4 lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002366 name: abdominal 5 lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesB neuron (FBbt:00002361) that is part of some abdominal 5 lateral sensillum campaniformium lc1 (FBbt:00002860)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002361 ! abdominal lesB neuron (Drosophila) relationship: part_of FBbt:00002860 ! abdominal 5 lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002367 name: abdominal 6 lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesB neuron (FBbt:00002361) that is part of some abdominal 6 lateral sensillum campaniformium lc1 (FBbt:00002861)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002361 ! abdominal lesB neuron (Drosophila) relationship: part_of FBbt:00002861 ! abdominal 6 lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002368 name: abdominal 7 lesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesB neuron (FBbt:00002361) that is part of some abdominal 7 lateral sensillum campaniformium lc1 (FBbt:00002862)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002361 ! abdominal lesB neuron (Drosophila) relationship: part_of FBbt:00002862 ! abdominal 7 lateral sensillum campaniformium lc1 (Drosophila) [Term] id: FBbt:00002369 name: abdominal lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of abdominal lateral sensillum trichodeum lh1. Fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lh1] subset: cur ! cur synonym: "H" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lh1] synonym: "h2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lh1] synonym: "lh1" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lh1] synonym: "shC" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lh1] is_a: FBbt:00002014 ! lesC neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) [Term] id: FBbt:00002370 name: abdominal 1 lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesC neuron (FBbt:00002369) that is part of some abdominal 1 lateral sensillum trichodeum lh2 (FBbt:00002848)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002369 ! abdominal lesC neuron (Drosophila) relationship: part_of FBbt:00002848 ! abdominal 1 lateral sensillum trichodeum lh2 (Drosophila) [Term] id: FBbt:00002371 name: abdominal 2 lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesC neuron (FBbt:00002369) that is part of some abdominal 2 lateral sensillum trichodeum lh2 (FBbt:00002849)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002369 ! abdominal lesC neuron (Drosophila) relationship: part_of FBbt:00002849 ! abdominal 2 lateral sensillum trichodeum lh2 (Drosophila) [Term] id: FBbt:00002372 name: abdominal 3 lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesC neuron (FBbt:00002369) that is part of some abdominal 3 lateral sensillum trichodeum lh2 (FBbt:00002850)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002369 ! abdominal lesC neuron (Drosophila) relationship: part_of FBbt:00002850 ! abdominal 3 lateral sensillum trichodeum lh2 (Drosophila) [Term] id: FBbt:00002373 name: abdominal 4 lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesC neuron (FBbt:00002369) that is part of some abdominal 4 lateral sensillum trichodeum lh2 (FBbt:00002851)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002369 ! abdominal lesC neuron (Drosophila) relationship: part_of FBbt:00002851 ! abdominal 4 lateral sensillum trichodeum lh2 (Drosophila) [Term] id: FBbt:00002374 name: abdominal 5 lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesC neuron (FBbt:00002369) that is part of some abdominal 5 lateral sensillum trichodeum lh2 (FBbt:00002852)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002369 ! abdominal lesC neuron (Drosophila) relationship: part_of FBbt:00002852 ! abdominal 5 lateral sensillum trichodeum lh2 (Drosophila) [Term] id: FBbt:00002375 name: abdominal 6 lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesC neuron (FBbt:00002369) that is part of some abdominal 6 lateral sensillum trichodeum lh2 (FBbt:00002853)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002369 ! abdominal lesC neuron (Drosophila) relationship: part_of FBbt:00002853 ! abdominal 6 lateral sensillum trichodeum lh2 (Drosophila) [Term] id: FBbt:00002376 name: abdominal 7 lesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lesC neuron (FBbt:00002369) that is part of some abdominal 7 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002838)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002369 ! abdominal lesC neuron (Drosophila) relationship: part_of FBbt:00002838 ! abdominal 7 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002378 name: abdominal 1 lch5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lch5 neuron (FBbt:00002019) that is part of some abdominal 1 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002832)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002019 ! lch5 neuron (Drosophila) relationship: part_of FBbt:00002832 ! abdominal 1 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002379 name: abdominal 2 lch5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lch5 neuron (FBbt:00002019) that is part of some abdominal 2 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002833)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002019 ! lch5 neuron (Drosophila) relationship: part_of FBbt:00002833 ! abdominal 2 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002380 name: abdominal 3 lch5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lch5 neuron (FBbt:00002019) that is part of some abdominal 3 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002834)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002019 ! lch5 neuron (Drosophila) relationship: part_of FBbt:00002834 ! abdominal 3 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002381 name: abdominal 4 lch5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lch5 neuron (FBbt:00002019) that is part of some abdominal 4 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002835)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002019 ! lch5 neuron (Drosophila) relationship: part_of FBbt:00002835 ! abdominal 4 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002382 name: abdominal 5 lch5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lch5 neuron (FBbt:00002019) that is part of some abdominal 5 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002836)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002019 ! lch5 neuron (Drosophila) relationship: part_of FBbt:00002836 ! abdominal 5 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002383 name: abdominal 6 lch5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lch5 neuron (FBbt:00002019) that is part of some abdominal 6 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002837)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002019 ! lch5 neuron (Drosophila) relationship: part_of FBbt:00002837 ! abdominal 6 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002384 name: abdominal 7 lch5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any lch5 neuron (FBbt:00002019) that is part of some abdominal 7 lateral pentascolopidial chordotonal organ lch5 (FBbt:00002838)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002019 ! lch5 neuron (Drosophila) relationship: part_of FBbt:00002838 ! abdominal 7 lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00002385 name: abdominal dorsal/lateral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001998 ! anterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002320 ! abdominal anterior fascicle neuron (Drosophila) is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00007313 ! integument of larval segment A1-7 (Drosophila) [Term] id: FBbt:00002386 name: abdominal dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the dorsal sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class III dendritic arborizing neuron." [FlyBase:FBrf0080250, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ddaA, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] subset: cur ! cur synonym: "dmd5" BROAD [] synonym: "dmd6" BROAD [] is_a: FBbt:00002025 ! dorsal multidendritic neuron ddaA (Drosophila) is_a: FBbt:00007274 ! class III dendritic arborizing neuron (Drosophila) is_a: FBbt:00007500 ! abdominal dorsal multidendritic neuron (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002387 name: abdominal 1 dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaA (FBbt:00002386) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002386 ! abdominal dorsal multidendritic neuron ddaA (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002388 name: abdominal 2 dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaA (FBbt:00002386) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002386 ! abdominal dorsal multidendritic neuron ddaA (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002389 name: abdominal 3 dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaA (FBbt:00002386) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002386 ! abdominal dorsal multidendritic neuron ddaA (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002390 name: abdominal 4 dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaA (FBbt:00002386) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002386 ! abdominal dorsal multidendritic neuron ddaA (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002391 name: abdominal 5 dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaA (FBbt:00002386) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002386 ! abdominal dorsal multidendritic neuron ddaA (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002392 name: abdominal 6 dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaA (FBbt:00002386) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002386 ! abdominal dorsal multidendritic neuron ddaA (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002393 name: abdominal 7 dorsal multidendritic neuron ddaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaA (FBbt:00002386) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002386 ! abdominal dorsal multidendritic neuron ddaA (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002394 name: abdominal dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the dorsal sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class II dendritic arborizing neuron." [FlyBase:FBrf0080250, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ddaB, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] subset: cur ! cur synonym: "dmd6" BROAD [] is_a: FBbt:00002026 ! dorsal multidendritic neuron ddaB (Drosophila) is_a: FBbt:00007273 ! class II dendritic arborizing neuron (Drosophila) is_a: FBbt:00007500 ! abdominal dorsal multidendritic neuron (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002395 name: abdominal 1 dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaB (FBbt:00002394) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002394 ! abdominal dorsal multidendritic neuron ddaB (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002396 name: abdominal 2 dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaB (FBbt:00002394) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002394 ! abdominal dorsal multidendritic neuron ddaB (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002397 name: abdominal 3 dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaB (FBbt:00002394) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002394 ! abdominal dorsal multidendritic neuron ddaB (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002398 name: abdominal 4 dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaB (FBbt:00002394) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002394 ! abdominal dorsal multidendritic neuron ddaB (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002399 name: abdominal 5 dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaB (FBbt:00002394) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002394 ! abdominal dorsal multidendritic neuron ddaB (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002400 name: abdominal 6 dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaB (FBbt:00002394) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002394 ! abdominal dorsal multidendritic neuron ddaB (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002401 name: abdominal 7 dorsal multidendritic neuron ddaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaB (FBbt:00002394) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002394 ! abdominal dorsal multidendritic neuron ddaB (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002402 name: abdominal dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the dorsal sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class IV dendritic arborizing neuron." [FlyBase:FBrf0080250, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ddaC, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] subset: cur ! cur synonym: "ddaF" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00002027 ! dorsal multidendritic neuron ddaC (Drosophila) is_a: FBbt:00007275 ! class IV dendritic arborizing neuron (Drosophila) is_a: FBbt:00007500 ! abdominal dorsal multidendritic neuron (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002403 name: abdominal 1 dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaC (FBbt:00002402) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002402 ! abdominal dorsal multidendritic neuron ddaC (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002404 name: abdominal 2 dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaC (FBbt:00002402) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002402 ! abdominal dorsal multidendritic neuron ddaC (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002405 name: abdominal 3 dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaC (FBbt:00002402) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002402 ! abdominal dorsal multidendritic neuron ddaC (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002406 name: abdominal 4 dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaC (FBbt:00002402) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002402 ! abdominal dorsal multidendritic neuron ddaC (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002407 name: abdominal 5 dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaC (FBbt:00002402) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002402 ! abdominal dorsal multidendritic neuron ddaC (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002408 name: abdominal 6 dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaC (FBbt:00002402) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002402 ! abdominal dorsal multidendritic neuron ddaC (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002409 name: abdominal 7 dorsal multidendritic neuron ddaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaC (FBbt:00002402) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002402 ! abdominal dorsal multidendritic neuron ddaC (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002410 name: abdominal dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the dorsal sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class I dendritic arborizing neuron." [FlyBase:FBrf0080250, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ddaD, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] subset: cur ! cur is_a: FBbt:00002028 ! dorsal multidendritic neuron ddaD (Drosophila) is_a: FBbt:00007272 ! class I dendritic arborizing neuron (Drosophila) is_a: FBbt:00007500 ! abdominal dorsal multidendritic neuron (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002411 name: abdominal 1 dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaD (FBbt:00002410) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002410 ! abdominal dorsal multidendritic neuron ddaD (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002412 name: abdominal 2 dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaD (FBbt:00002410) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002410 ! abdominal dorsal multidendritic neuron ddaD (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002413 name: abdominal 3 dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaD (FBbt:00002410) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002410 ! abdominal dorsal multidendritic neuron ddaD (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002414 name: abdominal 4 dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaD (FBbt:00002410) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002410 ! abdominal dorsal multidendritic neuron ddaD (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002415 name: abdominal 5 dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaD (FBbt:00002410) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002410 ! abdominal dorsal multidendritic neuron ddaD (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002416 name: abdominal 6 dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaD (FBbt:00002410) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002410 ! abdominal dorsal multidendritic neuron ddaD (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002417 name: abdominal 7 dorsal multidendritic neuron ddaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaD (FBbt:00002410) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002410 ! abdominal dorsal multidendritic neuron ddaD (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002418 name: abdominal dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the dorsal sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class I dendritic arborizing neuron." [FlyBase:FBrf0080250, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ddaE, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] subset: cur ! cur synonym: "dda1" BROAD [FlyBase:FBrf0137018] synonym: "dmd1" RELATED [FlyBase:FBrf0157166] is_a: FBbt:00002029 ! dorsal multidendritic neuron ddaE (Drosophila) is_a: FBbt:00007272 ! class I dendritic arborizing neuron (Drosophila) is_a: FBbt:00007500 ! abdominal dorsal multidendritic neuron (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002419 name: abdominal 1 dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaE (FBbt:00002418) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002418 ! abdominal dorsal multidendritic neuron ddaE (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002420 name: abdominal 2 dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaE (FBbt:00002418) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002418 ! abdominal dorsal multidendritic neuron ddaE (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002421 name: abdominal 3 dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaE (FBbt:00002418) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002418 ! abdominal dorsal multidendritic neuron ddaE (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002422 name: abdominal 4 dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaE (FBbt:00002418) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002418 ! abdominal dorsal multidendritic neuron ddaE (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002423 name: abdominal 5 dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaE (FBbt:00002418) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002418 ! abdominal dorsal multidendritic neuron ddaE (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002424 name: abdominal 6 dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaE (FBbt:00002418) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002418 ! abdominal dorsal multidendritic neuron ddaE (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002425 name: abdominal 7 dorsal multidendritic neuron ddaE (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaE (FBbt:00002418) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002418 ! abdominal dorsal multidendritic neuron ddaE (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002426 name: abdominal lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002036 def: "Multidendritic neuron in the lateral sensory cluster of larval abdominal segments 1-7. Its dendrites harbour long primary and secondary branches with many spiked protrusions (1-20um) along most of their length." [FlyBase:FBrf0148966, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ldaB] comment: Campos-Ortega and Hartenstein, 1997, have this labelled as a tracheal dendritic neuron 'ltd' - but analysis in Grueber et al., 2002, shows this to be a class III da neuron. The name ltd is also sometimes used as a synonym for istd, an unrelated tracheal dendritic neuron found near the anterior segment boundary of A1-7. subset: cur ! cur synonym: "abdominal lateral multidendritic neuron ltd" RELATED [FlyBase:FBrf0089570] synonym: "ltd" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00002032 ! lateral multidendritic neuron ldaB (Drosophila) is_a: FBbt:00007501 ! abdominal lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002427 name: abdominal 1 lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaB (FBbt:00002426) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002426 ! abdominal lateral multidendritic neuron ldaB (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002428 name: abdominal 2 lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaB (FBbt:00002426) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] comment: Campos-Ortega and Hartenstein, 1997, have this labeled as a tracheal dendritic neuron 'td' - but analysis in Grueber et al., 2002, shows this to be a class III da neuron. subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002426 ! abdominal lateral multidendritic neuron ldaB (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002429 name: abdominal 3 lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaB (FBbt:00002426) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] comment: Campos-Ortega and Hartenstein, 1997, have this labeled as a tracheal dendritic neuron 'td' - but analysis in Grueber et al., 2002, shows this to be a class III da neuron. subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002426 ! abdominal lateral multidendritic neuron ldaB (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002430 name: abdominal 4 lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaB (FBbt:00002426) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] comment: Campos-Ortega and Hartenstein, 1997, have this labeled as a tracheal dendritic neuron 'td' - but analysis in Grueber et al., 2002, shows this to be a class III da neuron. subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002426 ! abdominal lateral multidendritic neuron ldaB (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002431 name: abdominal 5 lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaB (FBbt:00002426) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] comment: Campos-Ortega and Hartenstein, 1997, have this labeled as a tracheal dendritic neuron 'td' - but analysis in Grueber et al., 2002, shows this to be a class III da neuron. subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002426 ! abdominal lateral multidendritic neuron ldaB (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002432 name: abdominal 6 lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaB (FBbt:00002426) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] comment: Campos-Ortega and Hartenstein, 1997, have this labeled as a tracheal dendritic neuron 'td' - but analysis in Grueber et al., 2002, shows this to be a class III da neuron. subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002426 ! abdominal lateral multidendritic neuron ldaB (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002433 name: abdominal 7 lateral multidendritic neuron ldaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaB (FBbt:00002426) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] comment: Campos-Ortega and Hartenstein, 1997, have this labeled as a tracheal dendritic neuron 'td' - but analysis in Grueber et al., 2002, shows this to be a class III da neuron. subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002426 ! abdominal lateral multidendritic neuron ldaB (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002434 name: abdominal lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002035 def: "Multidendritic neuron in the lateral sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class II dendritic arborizing neuron." [FlyBase:FBrf0089570, FlyBase:FBrf0148966, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ldaA] comment: Disambiguation - there is a multidendritic neuron of the lateral sensory cluster of T2 and T3 with the name ldaA (Campos-Ortega and Hartenstein, 1997), but this likely reflects a naming coincidence rather than indicating they should be classified with the ldaA neurons of A1-7. subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00002031 ! lateral multidendritic neuron ldaA (Drosophila) is_a: FBbt:00007273 ! class II dendritic arborizing neuron (Drosophila) is_a: FBbt:00007501 ! abdominal lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002435 name: abdominal 1 lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaA (FBbt:00002434) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002434 ! abdominal lateral multidendritic neuron ldaA (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002436 name: abdominal 2 lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaA (FBbt:00002434) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002434 ! abdominal lateral multidendritic neuron ldaA (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002437 name: abdominal 3 lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaA (FBbt:00002434) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002434 ! abdominal lateral multidendritic neuron ldaA (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002438 name: abdominal 4 lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaA (FBbt:00002434) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002434 ! abdominal lateral multidendritic neuron ldaA (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002439 name: abdominal 5 lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaA (FBbt:00002434) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002434 ! abdominal lateral multidendritic neuron ldaA (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002440 name: abdominal 6 lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaA (FBbt:00002434) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002434 ! abdominal lateral multidendritic neuron ldaA (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002441 name: abdominal 7 lateral multidendritic neuron ldaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral multidendritic neuron ldaA (FBbt:00002434) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "lda" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002434 ! abdominal lateral multidendritic neuron ldaA (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002442 name: abdominal dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Bipolar multidendritic neuron in the dorsal sensory cluster of larval abdominal segments 1-7. It emits two dendritic branches along muscle 3 (Williams and Shepherd, 1999), and fasciculates with the intersegmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, FlyBase:FBrf0108300, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dbd] subset: cur ! cur synonym: "dbd" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dbd] synonym: "dorsal bipolar neuron" BROAD [FlyBase:FBrf0089570] is_a: FBbt:00005212 ! bipolar dendrite neuron (Drosophila) is_a: FBbt:00007500 ! abdominal dorsal multidendritic neuron (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002443 name: abdominal 1 dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal bipolar neuron dbp (FBbt:00002442) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002444 name: abdominal 2 dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal bipolar neuron dbp (FBbt:00002442) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002445 name: abdominal 3 dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal bipolar neuron dbp (FBbt:00002442) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002446 name: abdominal 4 dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal bipolar neuron dbp (FBbt:00002442) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002447 name: abdominal 5 dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal bipolar neuron dbp (FBbt:00002442) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002448 name: abdominal 6 dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal bipolar neuron dbp (FBbt:00002442) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002449 name: abdominal 7 dorsal bipolar neuron dbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal bipolar neuron dbp (FBbt:00002442) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002451 name: abdominal posterior fascicle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that fasciculates with some abdominal segmental nerve (FBbt:00002197)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00002452 name: abdominal vch neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002039 ! vch neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) [Term] id: FBbt:00002453 name: abdominal 1 vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vch neuron (FBbt:00002452) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002452 ! abdominal vch neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002454 name: abdominal 2 vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vch neuron (FBbt:00002452) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002452 ! abdominal vch neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002455 name: abdominal 3 vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vch neuron (FBbt:00002452) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002452 ! abdominal vch neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002456 name: abdominal 4 vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vch neuron (FBbt:00002452) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002452 ! abdominal vch neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002457 name: abdominal 5 vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vch neuron (FBbt:00002452) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002452 ! abdominal vch neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002458 name: abdominal 6 vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vch neuron (FBbt:00002452) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002452 ! abdominal vch neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002459 name: abdominal 7 vch neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vch neuron (FBbt:00002452) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002452 ! abdominal vch neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002460 name: abdominal vch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of abdominal ventral monoscolopidial chordotonal organ vch1. Fasciculates in branch c of the segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vch1] subset: cur ! cur synonym: "vchA neuron" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002040 ! vch1 neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002461 name: abdominal 1 vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002460 ! abdominal vch1 neuron (Drosophila) relationship: part_of FBbt:00002905 ! abdominal 1 ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002462 name: abdominal 2 vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002460 ! abdominal vch1 neuron (Drosophila) relationship: part_of FBbt:00002906 ! abdominal 2 ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002463 name: abdominal 3 vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002460 ! abdominal vch1 neuron (Drosophila) relationship: part_of FBbt:00002907 ! abdominal 3 ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002464 name: abdominal 4 vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002460 ! abdominal vch1 neuron (Drosophila) relationship: part_of FBbt:00002908 ! abdominal 4 ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002465 name: abdominal 5 vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002460 ! abdominal vch1 neuron (Drosophila) relationship: part_of FBbt:00002909 ! abdominal 5 ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002466 name: abdominal 6 vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002460 ! abdominal vch1 neuron (Drosophila) relationship: part_of FBbt:00002910 ! abdominal 6 ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002467 name: abdominal 7 vch1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002460 ! abdominal vch1 neuron (Drosophila) relationship: part_of FBbt:00002911 ! abdominal 7 ventral monoscolopidial chordotonal organ vch1 (Drosophila) [Term] id: FBbt:00002468 name: abdominal vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of vc1. Fasciculates in branch c of the segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vc1] subset: cur ! cur synonym: "p1" RELATED [] synonym: "vc1" RELATED [] synonym: "vp1" RELATED [] is_a: FBbt:00002041 ! vesA neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002469 name: abdominal 1 vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesA neuron (FBbt:00002468) that is part of some abdominal 1 ventral sensillum campaniformium vc1 (FBbt:00002864)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002468 ! abdominal vesA neuron (Drosophila) relationship: part_of FBbt:00002864 ! abdominal 1 ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002470 name: abdominal 2 vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesA neuron (FBbt:00002468) that is part of some abdominal 2 ventral sensillum campaniformium vc1 (FBbt:00002865)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002468 ! abdominal vesA neuron (Drosophila) relationship: part_of FBbt:00002865 ! abdominal 2 ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002471 name: abdominal 3 vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesA neuron (FBbt:00002468) that is part of some abdominal 3 ventral sensillum campaniformium vc1 (FBbt:00002866)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002468 ! abdominal vesA neuron (Drosophila) relationship: part_of FBbt:00002866 ! abdominal 3 ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002472 name: abdominal 4 vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesA neuron (FBbt:00002468) that is part of some abdominal 4 ventral sensillum campaniformium vc1 (FBbt:00002867)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002468 ! abdominal vesA neuron (Drosophila) relationship: part_of FBbt:00002867 ! abdominal 4 ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002473 name: abdominal 5 vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesA neuron (FBbt:00002468) that is part of some abdominal 5 ventral sensillum campaniformium vc1 (FBbt:00002868)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002468 ! abdominal vesA neuron (Drosophila) relationship: part_of FBbt:00002868 ! abdominal 5 ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002474 name: abdominal 6 vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesA neuron (FBbt:00002468) that is part of some abdominal 6 ventral sensillum campaniformium vc1 (FBbt:00002869)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002468 ! abdominal vesA neuron (Drosophila) relationship: part_of FBbt:00002869 ! abdominal 6 ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002475 name: abdominal 7 vesA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesA neuron (FBbt:00002468) that is part of some abdominal 7 ventral sensillum campaniformium vc1 (FBbt:00002870)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002468 ! abdominal vesA neuron (Drosophila) relationship: part_of FBbt:00002870 ! abdominal 7 ventral sensillum campaniformium vc1 (Drosophila) [Term] id: FBbt:00002476 name: abdominal vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of vc2. Fasciculates in branch c of the segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vc2] subset: cur ! cur synonym: "p2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp2] synonym: "vc2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vp2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00002042 ! vesB neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002477 name: abdominal 1 vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesB neuron (FBbt:00002476) that is part of some abdominal 1 ventral sensillum campaniformium vc2 (FBbt:00002872)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002476 ! abdominal vesB neuron (Drosophila) relationship: part_of FBbt:00002872 ! abdominal 1 ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002478 name: abdominal 2 vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesB neuron (FBbt:00002476) that is part of some abdominal 2 ventral sensillum campaniformium vc2 (FBbt:00002873)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002476 ! abdominal vesB neuron (Drosophila) relationship: part_of FBbt:00002873 ! abdominal 2 ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002479 name: abdominal 3 vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesB neuron (FBbt:00002476) that is part of some abdominal 3 ventral sensillum campaniformium vc2 (FBbt:00002874)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002476 ! abdominal vesB neuron (Drosophila) relationship: part_of FBbt:00002874 ! abdominal 3 ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002480 name: abdominal 4 vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesB neuron (FBbt:00002476) that is part of some abdominal 4 ventral sensillum campaniformium vc2 (FBbt:00002875)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002476 ! abdominal vesB neuron (Drosophila) relationship: part_of FBbt:00002875 ! abdominal 4 ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002481 name: abdominal 5 vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesB neuron (FBbt:00002476) that is part of some abdominal 5 ventral sensillum campaniformium vc2 (FBbt:00002876)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002476 ! abdominal vesB neuron (Drosophila) relationship: part_of FBbt:00002876 ! abdominal 5 ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002482 name: abdominal 6 vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesB neuron (FBbt:00002476) that is part of some abdominal 6 ventral sensillum campaniformium vc2 (FBbt:00002877)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002476 ! abdominal vesB neuron (Drosophila) relationship: part_of FBbt:00002877 ! abdominal 6 ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002483 name: abdominal 7 vesB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesB neuron (FBbt:00002476) that is part of some abdominal 7 ventral sensillum campaniformium vc2 (FBbt:00002878)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002476 ! abdominal vesB neuron (Drosophila) relationship: part_of FBbt:00002878 ! abdominal 7 ventral sensillum campaniformium vc2 (Drosophila) [Term] id: FBbt:00002484 name: abdominal vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of vc3. Fasciculates in branch c of the segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vc3] subset: cur ! cur synonym: "p3" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vc3" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vp3" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00002043 ! vesC neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002485 name: abdominal 1 vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesC neuron (FBbt:00002484) that is part of some abdominal 1 ventral sensillum campaniformium vc3 (FBbt:00002880)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002484 ! abdominal vesC neuron (Drosophila) relationship: part_of FBbt:00002880 ! abdominal 1 ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002486 name: abdominal 2 vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesC neuron (FBbt:00002484) that is part of some abdominal 2 ventral sensillum campaniformium vc3 (FBbt:00002881)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002484 ! abdominal vesC neuron (Drosophila) relationship: part_of FBbt:00002881 ! abdominal 2 ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002487 name: abdominal 3 vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesC neuron (FBbt:00002484) that is part of some abdominal 3 ventral sensillum campaniformium vc3 (FBbt:00002882)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002484 ! abdominal vesC neuron (Drosophila) relationship: part_of FBbt:00002882 ! abdominal 3 ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002488 name: abdominal 4 vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesC neuron (FBbt:00002484) that is part of some abdominal 4 ventral sensillum campaniformium vc3 (FBbt:00002883)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002484 ! abdominal vesC neuron (Drosophila) relationship: part_of FBbt:00002883 ! abdominal 4 ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002489 name: abdominal 5 vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesC neuron (FBbt:00002484) that is part of some abdominal 5 ventral sensillum campaniformium vc3 (FBbt:00002884)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002484 ! abdominal vesC neuron (Drosophila) relationship: part_of FBbt:00002884 ! abdominal 5 ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002490 name: abdominal 6 vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesC neuron (FBbt:00002484) that is part of some abdominal 6 ventral sensillum campaniformium vc3 (FBbt:00002885)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002484 ! abdominal vesC neuron (Drosophila) relationship: part_of FBbt:00002885 ! abdominal 6 ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002491 name: abdominal 7 vesC neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal vesC neuron (FBbt:00002484) that is part of some abdominal 7 ventral sensillum campaniformium vc3 (FBbt:00002886)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002484 ! abdominal vesC neuron (Drosophila) relationship: part_of FBbt:00002886 ! abdominal 7 ventral sensillum campaniformium vc3 (Drosophila) [Term] id: FBbt:00002492 name: abdominal v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of vc4. Fasciculates in branch b of the segmental nerve, SNb (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "p4" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vc4" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vp4" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00002048 ! v'esA neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002493 name: abdominal 1 v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esA neuron (FBbt:00002492) that is part of some abdominal 1 ventral sensillum campaniformium vc4b (FBbt:00002896)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002492 ! abdominal v'esA neuron (Drosophila) relationship: part_of FBbt:00002896 ! abdominal 1 ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002494 name: abdominal 2 v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esA neuron (FBbt:00002492) that is part of some abdominal 2 ventral sensillum campaniformium vc4b (FBbt:00002897)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002492 ! abdominal v'esA neuron (Drosophila) relationship: part_of FBbt:00002897 ! abdominal 2 ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002495 name: abdominal 3 v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esA neuron (FBbt:00002492) that is part of some abdominal 3 ventral sensillum campaniformium vc4b (FBbt:00002898)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002492 ! abdominal v'esA neuron (Drosophila) relationship: part_of FBbt:00002898 ! abdominal 3 ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002496 name: abdominal 4 v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esA neuron (FBbt:00002492) that is part of some abdominal 4 ventral sensillum campaniformium vc4b (FBbt:00002899)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002492 ! abdominal v'esA neuron (Drosophila) relationship: part_of FBbt:00002899 ! abdominal 4 ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002497 name: abdominal 5 v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esA neuron (FBbt:00002492) that is part of some abdominal 5 ventral sensillum campaniformium vc4b (FBbt:00002900)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002492 ! abdominal v'esA neuron (Drosophila) relationship: part_of FBbt:00002900 ! abdominal 5 ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002498 name: abdominal 6 v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esA neuron (FBbt:00002492) that is part of some abdominal 6 ventral sensillum campaniformium vc4b (FBbt:00002901)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002492 ! abdominal v'esA neuron (Drosophila) relationship: part_of FBbt:00002901 ! abdominal 6 ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002499 name: abdominal 7 v'esA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esA neuron (FBbt:00002492) that is part of some abdominal 7 ventral sensillum campaniformium vc4b (FBbt:00002902)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002492 ! abdominal v'esA neuron (Drosophila) relationship: part_of FBbt:00002902 ! abdominal 7 ventral sensillum campaniformium vc4b (Drosophila) [Term] id: FBbt:00002500 name: abdominal v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of vc5. Fasciculates in branch b of the segmental nerve, SNb (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp4a] subset: cur ! cur synonym: "p5" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vc4a" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vp4a" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] is_a: FBbt:00002049 ! v'esB neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002501 name: abdominal 1 v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esB neuron (FBbt:00002500) that is part of some abdominal 1 ventral sensillum campaniformium vc4a (FBbt:00002888)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002500 ! abdominal v'esB neuron (Drosophila) relationship: part_of FBbt:00002888 ! abdominal 1 ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002502 name: abdominal 2 v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esB neuron (FBbt:00002500) that is part of some abdominal 2 ventral sensillum campaniformium vc4a (FBbt:00002889)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002500 ! abdominal v'esB neuron (Drosophila) relationship: part_of FBbt:00002889 ! abdominal 2 ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002503 name: abdominal 3 v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esB neuron (FBbt:00002500) that is part of some abdominal 3 ventral sensillum campaniformium vc4a (FBbt:00002890)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002500 ! abdominal v'esB neuron (Drosophila) relationship: part_of FBbt:00002890 ! abdominal 3 ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002504 name: abdominal 4 v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esB neuron (FBbt:00002500) that is part of some abdominal 4 ventral sensillum campaniformium vc4a (FBbt:00002891)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002500 ! abdominal v'esB neuron (Drosophila) relationship: part_of FBbt:00002891 ! abdominal 4 ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002505 name: abdominal 5 v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esB neuron (FBbt:00002500) that is part of some abdominal 5 ventral sensillum campaniformium vc4a (FBbt:00002892)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002500 ! abdominal v'esB neuron (Drosophila) relationship: part_of FBbt:00002892 ! abdominal 5 ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002506 name: abdominal 6 v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esB neuron (FBbt:00002500) that is part of some abdominal 6 ventral sensillum campaniformium vc4a (FBbt:00002893)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002500 ! abdominal v'esB neuron (Drosophila) relationship: part_of FBbt:00002893 ! abdominal 6 ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002507 name: abdominal 7 v'esB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'esB neuron (FBbt:00002500) that is part of some abdominal 7 ventral sensillum campaniformium vc4a (FBbt:00002894)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002500 ! abdominal v'esB neuron (Drosophila) relationship: part_of FBbt:00002894 ! abdominal 7 ventral sensillum campaniformium vc4a (Drosophila) [Term] id: FBbt:00002508 name: abdominal v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of v'es2. Fasciculates in branch a of the segmental nerve, SNa (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp5] comment: Disambiguation: Campos-Ortega and Hartenstein, 1997, name v'es2 as innervating papilla vp5. Due to possible confusion with synonyms of other PNS members (such as vp4a which has the synonym of vc5), we have adopted the terminology used by FlyPNS (http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html). subset: cur ! cur synonym: "p6" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp5] synonym: "vc5" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp5] synonym: "vp5" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp5] is_a: FBbt:00002050 ! v'es2 neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) [Term] id: FBbt:00002509 name: abdominal 1 v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'es2 neuron (FBbt:00002508) that is part of some abdominal 1 ventral sensillum campaniformium vc5 (FBbt:00005224)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002508 ! abdominal v'es2 neuron (Drosophila) relationship: part_of FBbt:00005224 ! abdominal 1 ventral sensillum campaniformium vc5 (Drosophila) [Term] id: FBbt:00002510 name: abdominal 2 v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'es2 neuron (FBbt:00002508) that is part of some abdominal 2 ventral sensillum campaniformium vc5n (FBbt:00005225)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002508 ! abdominal v'es2 neuron (Drosophila) relationship: part_of FBbt:00005225 ! abdominal 2 ventral sensillum campaniformium vc5n (Drosophila) [Term] id: FBbt:00002511 name: abdominal 3 v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'es2 neuron (FBbt:00002508) that is part of some abdominal 3 ventral sensillum campaniformium vc5 (FBbt:00005226)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002508 ! abdominal v'es2 neuron (Drosophila) relationship: part_of FBbt:00005226 ! abdominal 3 ventral sensillum campaniformium vc5 (Drosophila) [Term] id: FBbt:00002512 name: abdominal 4 v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'es2 neuron (FBbt:00002508) that is part of some abdominal 4 ventral sensillum campaniformium vc5 (FBbt:00005227)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002508 ! abdominal v'es2 neuron (Drosophila) relationship: part_of FBbt:00005227 ! abdominal 4 ventral sensillum campaniformium vc5 (Drosophila) [Term] id: FBbt:00002513 name: abdominal 5 v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'es2 neuron (FBbt:00002508) that is part of some abdominal 5 ventral sensillum campaniformium vc5 (FBbt:00005228)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002508 ! abdominal v'es2 neuron (Drosophila) relationship: part_of FBbt:00005228 ! abdominal 5 ventral sensillum campaniformium vc5 (Drosophila) [Term] id: FBbt:00002514 name: abdominal 6 v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'es2 neuron (FBbt:00002508) that is part of some abdominal 6 ventral sensillum campaniformium vc5 (FBbt:00005229)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002508 ! abdominal v'es2 neuron (Drosophila) relationship: part_of FBbt:00005229 ! abdominal 6 ventral sensillum campaniformium vc5 (Drosophila) [Term] id: FBbt:00002515 name: abdominal 7 v'es2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal v'es2 neuron (FBbt:00002508) that is part of some abdominal 7 ventral sensillum campaniformium vc5 (FBbt:00005230)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002508 ! abdominal v'es2 neuron (Drosophila) relationship: part_of FBbt:00005230 ! abdominal 7 ventral sensillum campaniformium vc5 (Drosophila) [Term] id: FBbt:00002516 name: abdominal ventral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any multidendritic neuron (FBbt:00005209) that is part of some embryonic/larval ventral sensory cluster of A1-7 (FBbt:00007309)." [FBC:auto_generated_definition, FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002054 ! ventral multidendritic neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002517 name: abdominal anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the anterior ventral sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class IV dendritic arborizing neuron." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd4a] subset: cur ! cur synonym: "v'ada" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd4a] synonym: "vmd4a" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd4a] is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00007275 ! class IV dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002518 name: abdominal 1 anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal anterior ventral multidendritic neuron vdaa (FBbt:00002517) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002517 ! abdominal anterior ventral multidendritic neuron vdaa (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002519 name: abdominal 2 anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal anterior ventral multidendritic neuron vdaa (FBbt:00002517) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002517 ! abdominal anterior ventral multidendritic neuron vdaa (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002520 name: abdominal 3 anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal anterior ventral multidendritic neuron vdaa (FBbt:00002517) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002517 ! abdominal anterior ventral multidendritic neuron vdaa (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002521 name: abdominal 4 anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal anterior ventral multidendritic neuron vdaa (FBbt:00002517) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002517 ! abdominal anterior ventral multidendritic neuron vdaa (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002522 name: abdominal 5 anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal anterior ventral multidendritic neuron vdaa (FBbt:00002517) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002517 ! abdominal anterior ventral multidendritic neuron vdaa (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002523 name: abdominal 6 anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal anterior ventral multidendritic neuron vdaa (FBbt:00002517) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002517 ! abdominal anterior ventral multidendritic neuron vdaa (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002524 name: abdominal 7 anterior ventral multidendritic neuron vdaa (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal anterior ventral multidendritic neuron vdaa (FBbt:00002517) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002517 ! abdominal anterior ventral multidendritic neuron vdaa (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002525 name: abdominal posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Class I dendritic arborizing neuron of larval segments A1-7. Its cell body is located in the ventral cluster of sense organs and is the most posteriorly located of the multidendritic neurons found in these segments. Fasciculates in branch c of the abdominal segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, FlyBase:FBrf0148966, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vdap, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] comment: Campos Ortega and Hartenstein (1997) state in one place that this neuron fasciculates with SNc and elsewhere that it fasciculates with SNa. It seems unlikely to do both, so have gone with SNc on the basis of the relevant figures. subset: cur ! cur synonym: "vpda" EXACT [FlyBase:FBrf0148966, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00007272 ! class I dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002526 name: abdominal 1 posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal posterior ventral multidendritic neuron vdap (FBbt:00002525) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002525 ! abdominal posterior ventral multidendritic neuron vdap (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002527 name: abdominal 2 posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal posterior ventral multidendritic neuron vdap (FBbt:00002525) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002525 ! abdominal posterior ventral multidendritic neuron vdap (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002528 name: abdominal 3 posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal posterior ventral multidendritic neuron vdap (FBbt:00002525) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002525 ! abdominal posterior ventral multidendritic neuron vdap (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002529 name: abdominal 4 posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal posterior ventral multidendritic neuron vdap (FBbt:00002525) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002525 ! abdominal posterior ventral multidendritic neuron vdap (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002530 name: abdominal 5 posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal posterior ventral multidendritic neuron vdap (FBbt:00002525) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002525 ! abdominal posterior ventral multidendritic neuron vdap (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002531 name: abdominal 6 posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal posterior ventral multidendritic neuron vdap (FBbt:00002525) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002525 ! abdominal posterior ventral multidendritic neuron vdap (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002532 name: abdominal 7 posterior ventral multidendritic neuron vdap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal posterior ventral multidendritic neuron vdap (FBbt:00002525) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002525 ! abdominal posterior ventral multidendritic neuron vdap (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002533 name: abdominal ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002061 def: "Multidendritic neuron in the ventral sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class III dendritic arborizing neuron." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vppda] subset: cur ! cur synonym: "v'pda" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vppda] synonym: "vdap" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] synonym: "ventral multidendritic neuron v'dap" EXACT [] synonym: "vpda" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002534 name: abdominal 1 ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron v'dap (FBbt:00002533) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002533 ! abdominal ventral multidendritic neuron v'dap (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002535 name: abdominal 2 ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron v'dap (FBbt:00002533) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002533 ! abdominal ventral multidendritic neuron v'dap (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002536 name: abdominal 3 ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron v'dap (FBbt:00002533) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002533 ! abdominal ventral multidendritic neuron v'dap (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002537 name: abdominal 4 ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron v'dap (FBbt:00002533) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002533 ! abdominal ventral multidendritic neuron v'dap (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002538 name: abdominal 5 ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron v'dap (FBbt:00002533) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002533 ! abdominal ventral multidendritic neuron v'dap (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002539 name: abdominal 6 ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron v'dap (FBbt:00002533) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002533 ! abdominal ventral multidendritic neuron v'dap (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002540 name: abdominal 7 ventral multidendritic neuron v'dap (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron v'dap (FBbt:00002533) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002533 ! abdominal ventral multidendritic neuron v'dap (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002541 name: abdominal ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the ventral sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class I dendritic arborizing neuron." [FlyBase:FBrf0148966, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd4, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] subset: cur ! cur synonym: "vdaD" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] synonym: "vmd4" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] synonym: "vmd5" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] is_a: FBbt:00002055 ! ventral multidendritic neuron vdaA (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00007273 ! class II dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002542 name: abdominal 1 ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaA (FBbt:00002541) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002541 ! abdominal ventral multidendritic neuron vdaA (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002543 name: abdominal 2 ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaA (FBbt:00002541) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002541 ! abdominal ventral multidendritic neuron vdaA (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002544 name: abdominal 3 ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaA (FBbt:00002541) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002541 ! abdominal ventral multidendritic neuron vdaA (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002545 name: abdominal 4 ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaA (FBbt:00002541) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002541 ! abdominal ventral multidendritic neuron vdaA (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002546 name: abdominal 5 ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaA (FBbt:00002541) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002541 ! abdominal ventral multidendritic neuron vdaA (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002547 name: abdominal 6 ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaA (FBbt:00002541) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002541 ! abdominal ventral multidendritic neuron vdaA (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002548 name: abdominal 7 ventral multidendritic neuron vdaA (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaA (FBbt:00002541) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002541 ! abdominal ventral multidendritic neuron vdaA (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002549 name: abdominal ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron in the ventral sensory cluster of larval abdominal segments 1-7. Based on its dendritic pattern, it is a class IV dendritic arborizing neuron." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd1a, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] subset: cur ! cur synonym: "vmd1a" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd1a] synonym: "vmd5" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html#Swe2002] is_a: FBbt:00002056 ! ventral multidendritic neuron vdaB (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00007275 ! class IV dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002550 name: abdominal 1 ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaB (FBbt:00002549) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002549 ! abdominal ventral multidendritic neuron vdaB (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002551 name: abdominal 2 ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaB (FBbt:00002549) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002549 ! abdominal ventral multidendritic neuron vdaB (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002552 name: abdominal 3 ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaB (FBbt:00002549) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002549 ! abdominal ventral multidendritic neuron vdaB (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002553 name: abdominal 4 ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaB (FBbt:00002549) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002549 ! abdominal ventral multidendritic neuron vdaB (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002554 name: abdominal 5 ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaB (FBbt:00002549) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002549 ! abdominal ventral multidendritic neuron vdaB (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002555 name: abdominal 6 ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaB (FBbt:00002549) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002549 ! abdominal ventral multidendritic neuron vdaB (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002556 name: abdominal 7 ventral multidendritic neuron vdaB (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaB (FBbt:00002549) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002549 ! abdominal ventral multidendritic neuron vdaB (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002557 name: abdominal ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Class II dendritic arborizing neuron of larval segments A1-7. Its cell body is located in the ventral cluster of sense organs within the vmd5 group." [FlyBase:FBrf0148966, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd2, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] subset: cur ! cur synonym: "vmd2" EXACT [FlyBase:FBrf0151928] synonym: "vmd5" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] is_a: FBbt:00002057 ! ventral multidendritic neuron vdaC (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00007273 ! class II dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002558 name: abdominal 1 ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaC (FBbt:00002557) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002557 ! abdominal ventral multidendritic neuron vdaC (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002559 name: abdominal 2 ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaC (FBbt:00002557) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002557 ! abdominal ventral multidendritic neuron vdaC (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002560 name: abdominal 3 ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaC (FBbt:00002557) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002557 ! abdominal ventral multidendritic neuron vdaC (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002561 name: abdominal 4 ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaC (FBbt:00002557) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002557 ! abdominal ventral multidendritic neuron vdaC (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002562 name: abdominal 5 ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaC (FBbt:00002557) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002557 ! abdominal ventral multidendritic neuron vdaC (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002563 name: abdominal 6 ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaC (FBbt:00002557) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002557 ! abdominal ventral multidendritic neuron vdaC (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002564 name: abdominal 7 ventral multidendritic neuron vdaC (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaC (FBbt:00002557) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002557 ! abdominal ventral multidendritic neuron vdaC (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002565 name: abdominal ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Class III dendritic arborizing neuron of larval segments A1-7. Its cell body is located in the ventral cluster of sense organs within the vmd5 group." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd1, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] subset: cur ! cur synonym: "vdaA" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "vmd1" EXACT [FlyBase:FBrf0151928] synonym: "vmd5" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002058 ! ventral multidendritic neuron vdaD (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00007274 ! class III dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002566 name: abdominal 1 ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaD (FBbt:00002565) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002565 ! abdominal ventral multidendritic neuron vdaD (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002567 name: abdominal 2 ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaD (FBbt:00002565) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002565 ! abdominal ventral multidendritic neuron vdaD (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002568 name: abdominal 3 ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaD (FBbt:00002565) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002565 ! abdominal ventral multidendritic neuron vdaD (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002569 name: abdominal 4 ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaD (FBbt:00002565) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002565 ! abdominal ventral multidendritic neuron vdaD (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002570 name: abdominal 5 ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaD (FBbt:00002565) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002565 ! abdominal ventral multidendritic neuron vdaD (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002571 name: abdominal 6 ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaD (FBbt:00002565) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002565 ! abdominal ventral multidendritic neuron vdaD (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002572 name: abdominal 7 ventral multidendritic neuron vdaD (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vdaD (FBbt:00002565) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002565 ! abdominal ventral multidendritic neuron vdaD (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002573 name: abdominal ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002059 def: "Tracheal associated multidendritic neuron of the ventral cluster of segments A1-7. Unlike other sensory neurons of the abdominal segments, it and vtd2 do not project their neurons within the segment where they originate but project more anteriorly up to segment T3 where they cross the midline." [FlyBase:FBrf0080250, FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vtd1] subset: cur ! cur synonym: "v'td2" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "ventral multidendritic neuron vtd1" EXACT [] is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00005214 ! tracheal innervating neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002574 name: abdominal 1 ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd1 (FBbt:00002573) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002573 ! abdominal ventral multidendritic neuron vtd1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002575 name: abdominal 2 ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd1 (FBbt:00002573) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002573 ! abdominal ventral multidendritic neuron vtd1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002576 name: abdominal 3 ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd1 (FBbt:00002573) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002573 ! abdominal ventral multidendritic neuron vtd1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002577 name: abdominal 4 ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd1 (FBbt:00002573) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002573 ! abdominal ventral multidendritic neuron vtd1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002578 name: abdominal 5 ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd1 (FBbt:00002573) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002573 ! abdominal ventral multidendritic neuron vtd1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002579 name: abdominal 6 ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd1 (FBbt:00002573) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002573 ! abdominal ventral multidendritic neuron vtd1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002580 name: abdominal 7 ventral multidendritic neuron vtd1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd1 (FBbt:00002573) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002573 ! abdominal ventral multidendritic neuron vtd1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002581 name: abdominal ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002060 def: "Tracheal associated multidendritic neuron of the ventral cluster of segments A1-7. Unlike other sensory neurons of the abdominal segments, it and vtd1 do not project their neurons within the segment where they originate but project more anteriorly up to segment T3 where they cross the midline." [FlyBase:FBrf0080250, FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vtd2] subset: cur ! cur synonym: "v'td2" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vtd2] synonym: "ventral multidendritic neuron vtd2" EXACT [] is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00005214 ! tracheal innervating neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002582 name: abdominal 1 ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd2 (FBbt:00002581) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002581 ! abdominal ventral multidendritic neuron vtd2 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002583 name: abdominal 2 ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd2 (FBbt:00002581) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002581 ! abdominal ventral multidendritic neuron vtd2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002584 name: abdominal 3 ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd2 (FBbt:00002581) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002581 ! abdominal ventral multidendritic neuron vtd2 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002585 name: abdominal 4 ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd2 (FBbt:00002581) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002581 ! abdominal ventral multidendritic neuron vtd2 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002586 name: abdominal 5 ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd2 (FBbt:00002581) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002581 ! abdominal ventral multidendritic neuron vtd2 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002587 name: abdominal 6 ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd2 (FBbt:00002581) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002581 ! abdominal ventral multidendritic neuron vtd2 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002588 name: abdominal 7 ventral multidendritic neuron vtd2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral multidendritic neuron vtd2 (FBbt:00002581) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002581 ! abdominal ventral multidendritic neuron vtd2 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002589 name: abdominal ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Bipolar multidendritic neuron in the ventral sensory cluster of larval abdominal segments 1-7. It emits two dendritic branches along the anterior posterior axis." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd3] comment: FlyPNS cites Campos-Ortega and Hartenstein, (1997), as using the name 'vbd' for abdominal ventral neuron 'vbp'. Campos-Ortega and Hartenstein, (1997), only use 'vbd' as a name for a neuron found in thoracic segments, and use 'vbp' for the neuron identified with FlyPNS' vmd3. sr120210. subset: cur ! cur synonym: "vbd" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd3] synonym: "vmd3" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vmd3] is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00005212 ! bipolar dendrite neuron (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002590 name: abdominal 1 ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral bipolar neuron vbp (FBbt:00002589) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00002589 ! abdominal ventral bipolar neuron vbp (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002591 name: abdominal 2 ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral bipolar neuron vbp (FBbt:00002589) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00002589 ! abdominal ventral bipolar neuron vbp (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002592 name: abdominal 3 ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral bipolar neuron vbp (FBbt:00002589) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00002589 ! abdominal ventral bipolar neuron vbp (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002593 name: abdominal 4 ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral bipolar neuron vbp (FBbt:00002589) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00002589 ! abdominal ventral bipolar neuron vbp (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002594 name: abdominal 5 ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral bipolar neuron vbp (FBbt:00002589) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00002589 ! abdominal ventral bipolar neuron vbp (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002595 name: abdominal 6 ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral bipolar neuron vbp (FBbt:00002589) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00002589 ! abdominal ventral bipolar neuron vbp (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002596 name: abdominal 7 ventral bipolar neuron vbp (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral bipolar neuron vbp (FBbt:00002589) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00002589 ! abdominal ventral bipolar neuron vbp (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002597 name: abdominal median nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00002598 name: abdominal 1 median nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal median nerve (FBbt:00002597) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002599 name: abdominal 2 median nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal median nerve (FBbt:00002597) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002600 name: abdominal 3 median nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal median nerve (FBbt:00002597) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002601 name: abdominal 4 median nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal median nerve (FBbt:00002597) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002602 name: abdominal 5 median nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal median nerve (FBbt:00002597) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002603 name: abdominal 6 median nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal median nerve (FBbt:00002597) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002604 name: abdominal 7 median nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal median nerve (FBbt:00002597) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002605 name: abdominal 8 median nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dorsal nerve" RELATED [] is_a: FBbt:00002597 ! abdominal median nerve (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002606 name: embryonic/larval abdominal 8 nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve of larval abdominal segment 8. This nerve has three roots, two of which are in positions corresponding the roots of the segmental and intersegmental nerves in A1-7. It follows a path similar to that of the nerve of larval abdominal segment 9, which contains some fibers that originate in the roots of the A8 nerve. It carries motor neurons that innervate the ventral longitudinal and lateral transverse muscles of A8. It also carries sensory afferents from the spiracular hairs and from the following A8 sensilla: DMSOp, ALSOp, lch3, DMSOh." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "abdominal 8 intersegmental nerve" EXACT [] synonym: "larval abdominal 8 nerve" EXACT [] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002607 name: abdominal 8 sensory neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001995 ! A8 neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002608 name: abdominal 8 des1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002005 ! des1 neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002931 ! abdominal 8 dorsomedial sensillum trichodeum ALSOh (Drosophila) [Term] id: FBbt:00002609 name: abdominal 8 des3 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002007 ! des3 neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00002932 ! abdominal 8 dorsomedial sensillum basiconicum ALSOp (Drosophila) [Term] id: FBbt:00002610 name: abdominal 8 desn neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002004 ! desn neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002929 ! abdominal 8 dorsal sensillum trichodeum DMSOh (Drosophila) relationship: part_of FBbt:00002930 ! abdominal 8 dorsal sensillum basiconicum DMSOp (Drosophila) [Term] id: FBbt:00002611 name: abdominal 8 dch3/1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002011 ! dch3/1 neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) relationship: part_of FBbt:00002933 ! abdominal 8 lateral chordotonal organ lch3 (Drosophila) [Term] id: FBbt:00002612 name: abdominal 8 spA neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron whose dendrite innervates spiracular sensillum trichodeum 1." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "sso" BROAD [FlyBase:FBrf0089570] is_a: FBbt:00002020 ! spA neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002936 ! spiracular sensillum trichodeum 1 (Drosophila) [Term] id: FBbt:00002613 name: abdominal 8 spB neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron whose dendrite innervates spiracular sensillum trichodeum 2." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002021 ! spB neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002937 ! spiracular sensillum trichodeum 2 (Drosophila) [Term] id: FBbt:00002614 name: abdominal 8 spC neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002022 ! spC neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002938 ! spiracular sensillum trichodeum 3 (Drosophila) [Term] id: FBbt:00002615 name: abdominal 8 spD neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002023 ! spD neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) relationship: part_of FBbt:00002939 ! spiracular sensillum trichodeum 4 (Drosophila) [Term] id: FBbt:00002616 name: abdominal 8 lateral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002385 ! abdominal dorsal/lateral multidendritic neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) [Term] id: FBbt:00002617 name: abdominal 8 ventral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002516 ! abdominal ventral multidendritic neuron (Drosophila) is_a: FBbt:00002607 ! abdominal 8 sensory neuron (Drosophila) [Term] id: FBbt:00002618 name: abdominal 9 intersegmental nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00002619 name: abdominal 9 sensory neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00002620 name: abdominal 9 des3+1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002008 ! des3+1 neuron (Drosophila) is_a: FBbt:00002619 ! abdominal 9 sensory neuron (Drosophila) is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002943 ! abdominal 9 dorsocaudal sensory organ PSLOh (Drosophila) relationship: part_of FBbt:00002944 ! abdominal 9 dorsocaudal sensory organ PSLOp (Drosophila) [Term] id: FBbt:00002621 name: abdominal 9 dch3/1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002011 ! dch3/1 neuron (Drosophila) is_a: FBbt:00002619 ! abdominal 9 sensory neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002945 ! abdominal 9 lateral chordotonal organ lch3/1 (Drosophila) [Term] id: FBbt:00002622 name: abdominal 9 multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002619 ! abdominal 9 sensory neuron (Drosophila) is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00002623 name: abdominal 10 intersegmental nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00001757 ! larval abdominal segment 10 (Drosophila) [Term] id: FBbt:00002624 name: abdominal 10 sensory neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00002625 name: abdominal 10 des3+1+1 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002009 ! des3+1+1 neuron (Drosophila) is_a: FBbt:00002624 ! abdominal 10 sensory neuron (Drosophila) is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002949 ! abdominal 10 caudal sensillum basiconicum ASO (Drosophila) [Term] id: FBbt:00002626 name: abdominal 10 vesM neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the embryonic/larval 10th abdominal segment. It lies ventral to the anal pad." [FlyBase:FBrf0045359] subset: cur ! cur is_a: FBbt:00002046 ! vesM neuron (Drosophila) is_a: FBbt:00002624 ! abdominal 10 sensory neuron (Drosophila) [Term] id: FBbt:00002627 name: abdominal 10 bipolar neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002624 ! abdominal 10 sensory neuron (Drosophila) is_a: FBbt:00005212 ! bipolar dendrite neuron (Drosophila) [Term] id: FBbt:00002628 name: embryonic/larval stomatogastric nervous system (Drosophila) namespace: fly_anatomy.ontology def: "A group of small, interconnected ganglia situated posterior to and between the two brain hemispheres and associated with the pharynx, esophagus, proventriculus and dorsal pouch." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "stomodeal nervous system" RELATED [] is_a: FBbt:00005096 ! stomatogastric nervous system (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00002629 name: embryonic/larval frontal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "A small ganglion of the larval stomatogastric nervous system. It consists of approximately 25-30 neurons that form a U-shaped ganglion wedged between the anterior aspect of the brain hemispheres and the dorsal pharynx. The somata of the neurons surround a sparse neuropil domain and are enclosed in a glial sheath. Lateral projections from these neurons form the frontal connective. Medial projections that turn anteriorly on reaching the midline form the frontal nerve. Medial projections that turn posteriorly on reaching the midline form the recurrent nerve." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "parapharyngeal ganglion" RELATED [] is_a: FBbt:00005803 ! frontal ganglion (Drosophila) relationship: develops_from FBbt:00001079 ! delaminating stomatogastric nervous system precursor (Drosophila) relationship: part_of FBbt:00002628 ! embryonic/larval stomatogastric nervous system (Drosophila) [Term] id: FBbt:00002630 name: embryonic/larval frontal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Larval nerve that travels in the median cleft between the dorsal pharyngeal muscles (Campos-Ortega and Hartenstein, 1997). It connects the tritocerebrum and the frontal ganglion." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "FrN" RELATED [] synonym: "frontal nerve" EXACT [] is_a: FBbt:00100329 ! frontal nerve (Drosophila) relationship: part_of FBbt:00002628 ! embryonic/larval stomatogastric nervous system (Drosophila) [Term] id: FBbt:00002631 name: embryonic/larval recurrent nerve (Drosophila) namespace: fly_anatomy.ontology def: "Larval nerve connecting the frontal ganglion to the hypocerebral and paraesophageal ganglia. It contains approximately 50 neuronal projections and is surrounded by flattened cells - probably glia." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "RcN" RELATED [] synonym: "recurrens nerve" EXACT [FlyBase:FBrf0104745] synonym: "recurrent nerve" RELATED [] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00002628 ! embryonic/larval stomatogastric nervous system (Drosophila) [Term] id: FBbt:00002632 name: embryonic/larval hypocerebral ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Small ganglion of the larval stomatogastric nervous system located on the left hand side of the larva, between the two brain hemispheres, behind the supraesophageal commissure. It is more compact than the paraesophageal ganglion and occupies a more dorsal position." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00005804 ! hypocerebral ganglion (Drosophila) relationship: develops_from FBbt:00001077 ! intermediate vesicle of tSNSP (Drosophila) relationship: part_of FBbt:00002628 ! embryonic/larval stomatogastric nervous system (Drosophila) [Term] id: FBbt:00002633 name: esophageal ganglion 1 (Drosophila) namespace: fly_anatomy.ontology def: "Esophageal ganglion of the embryonic/larval brain. It is composed of a row of cells apposed to the esophagus and, from a dorsal perspective, it lies to the left of esophageal ganglion 2." [FlyBase:FBrf0075001] subset: cur ! cur is_a: FBbt:00005760 ! esophageal ganglion (Drosophila) relationship: part_of FBbt:00002632 ! embryonic/larval hypocerebral ganglion (Drosophila) [Term] id: FBbt:00002634 name: esophageal ganglion 2 (Drosophila) namespace: fly_anatomy.ontology def: "Esophageal ganglion of the embryonic/larval brain. It is formed by a group of cells connected through the proventricular nerve to the proventricular ganglion. From a dorsal perspective, it lies to the right of esophageal ganglion 1." [FlyBase:FBrf0075001] subset: cur ! cur is_a: FBbt:00005760 ! esophageal ganglion (Drosophila) relationship: part_of FBbt:00002632 ! embryonic/larval hypocerebral ganglion (Drosophila) [Term] id: FBbt:00002635 name: paraesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Small ganglion of the embryonic/larval stomatogastric nervous system located on the right hand side of the larva, between the two brain hemispheres, behind the supraesophageal commissure. It is elongated, less compact than the hypoesophageal ganglion and occupies a more ventral position, closely attached to the esophageal wall." [FlyBase:FBrf0089570] subset: cur ! cur is_a: UBERON:0000045 ! ganglion relationship: develops_from FBbt:00001076 ! rostral vesicle of tSNSP (Drosophila) relationship: part_of FBbt:00002628 ! embryonic/larval stomatogastric nervous system (Drosophila) [Term] id: FBbt:00002636 name: esophageal nerve 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00002637 name: esophageal nerve 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00002638 name: embryonic/larval ventricular ganglion (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of about 10 neurons whose somata are associated with the embryonic/larval proventriculus. Short axons projecting posteriorly from this structure fan out over the surface of the proventriculus." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "proventricular ganglion" RELATED [] is_a: FBbt:00005761 ! proventricular ganglion (Drosophila) relationship: develops_from FBbt:00001078 ! caudal vesicle of tSNSP (Drosophila) relationship: part_of FBbt:00002628 ! embryonic/larval stomatogastric nervous system (Drosophila) [Term] id: FBbt:00002639 name: embryonic/larval sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some larva (FBbt:00001727)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval sense organ" EXACT [] is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00002640 name: antenno-maxillary complex (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of sense organs on a protuberance on either side of the anterior tip of the larval head. It contains the dorsal organ, the terminal organ and the ventral organ." [FlyBase:FBrf0089570] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "antennomaxillary complex" RELATED [] is_a: FBbt:00007316 ! sensory cluster (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00002641 name: buccal tree (Drosophila) namespace: fly_anatomy.ontology def: "Innervated cuticular specialization just inside the larval mouth." [FlyBase:FBrf0034076] comment: Maybe - epipharyngeal sense organ. subset: cur ! cur is_a: FBbt:00007231 ! external sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) is_a: FBbt:00007243 ! embryonic/larval foregut sensillum (Drosophila) relationship: part_of FBbt:00001868 ! embryonic/larval epipharynx (Drosophila) relationship: part_of FBbt:00002640 ! antenno-maxillary complex (Drosophila) [Term] id: FBbt:00002642 name: embryonic/larval ocular segment sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval sense organ (FBbt:00002639) that is part of some larval ocular segment (FBbt:00001731)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval ocular segment sensillum" EXACT [] is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) [Term] id: FBbt:00002644 name: dorsomedial papilla (Drosophila) namespace: fly_anatomy.ontology def: "Papilla of the dorso-lateral group of sensilla of the terminal organ. It is located more medial than the dorsolateral papilla." [FlyBase:FBrf0045366, FlyBase:FBrf0075072, FlyBase:FBrf0103263] comment: Schmidt-Ott et al., (1994), places this in the ocular segment (roughly equivalent to acron). Jurgens et al., (1986), explain that the DLP and DMP are considered to be of different origins to the other 7 papillae of the terminal organ/MxSO because their axons do not join the maxillary nerve and they are found in different locations in certain homeotic mutants. subset: cur ! cur synonym: "dmp" RELATED [] synonym: "dorso-medial papilla" EXACT [] synonym: "dorsomedial papilla of the maxillary sense organ" RELATED [] synonym: "internal dorsal fold sensillum" RELATED [] is_a: FBbt:00002706 ! dorso-lateral group terminal organ sensillum (Drosophila) [Term] id: FBbt:00002645 name: medial group of sensillum 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DFM1" RELATED [] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) [Term] id: FBbt:00002646 name: medial group of sensillum 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DFM2" RELATED [] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) [Term] id: FBbt:00002647 name: medial group of sensillum 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DFM3" RELATED [] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) [Term] id: FBbt:00002648 name: lateral sensillum DFL (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) [Term] id: FBbt:00002649 name: embryonic/larval labral segment sense organ (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002650 def: "Any sense organ (FBbt:00005155) that is part of some larval labral segment (FBbt:00001734)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval labral segment sense organ" EXACT [] is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: part_of FBbt:00001734 ! larval labral segment (Drosophila) [Term] id: FBbt:00002651 name: pharyngeal monoscolopidial chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Monoscolopidial chordotonal organ located immediately posterior to the dorsal pharyngeal organ. Its neuron fasciculates with the labral nerve." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "pch1" RELATED [] is_a: FBbt:00002649 ! embryonic/larval labral segment sense organ (Drosophila) is_a: FBbt:00002663 ! monoscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00001734 ! larval labral segment (Drosophila) [Term] id: FBbt:00002652 name: dorsopharyngeal organ (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum innervated by 3 neurons, located just posterior to the epiphysis (lso)." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] comment: Part relation to labral segment from Schmidt-Ott et al., 1994. subset: cur ! cur synonym: "dpo" EXACT [] is_a: FBbt:00002649 ! embryonic/larval labral segment sense organ (Drosophila) is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00005617 ! labral sensory complex (Drosophila) [Term] id: FBbt:00002654 name: embryonic/larval antennal segment sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some larval antennal segment (FBbt:00001735)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval antennal segment sensillum" EXACT [] is_a: FBbt:00005806 ! antennal sense organ (Drosophila) is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) [Term] id: FBbt:00002655 name: dorsal organ (Drosophila) namespace: fly_anatomy.ontology def: "An external compound sense organ of the antenno-maxillary complex of the larval head consisting of a dome shaped cuticular process, innervated by seven circularly arranged triplets of olfactory receptor neuron dendrites. Six small papillae surround the base of the central dome." [FlyBase:FBrf0074007, FlyBase:FBrf0089570, FlyBase:FBrf0201176] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "antennal element" RELATED [] synonym: "antennales Organ" RELATED [] synonym: "do" EXACT [] synonym: "larval antennal sense organ" RELATED [] is_a: FBbt:00002654 ! embryonic/larval antennal segment sensillum (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) is_a: FBbt:00007235 ! external compound sense organ (Drosophila) is_a: UBERON:0003212 ! gustatory organ relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) relationship: part_of FBbt:00002640 ! antenno-maxillary complex (Drosophila) [Term] id: FBbt:00002656 name: papilla of dorsal organ (Drosophila) namespace: fly_anatomy.ontology def: "Small papilla at the base of the central dome sensillum of the dorsal organ. There are 6 of these, all bi-innervated except for one which is mono-innervated." [FlyBase:FBrf0074007, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002654 ! embryonic/larval antennal segment sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00002657 name: papilla of dorsal organ 1 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002656 ! papilla of dorsal organ (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00002658 name: papilla of dorsal organ 2 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002656 ! papilla of dorsal organ (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00002659 name: papilla of dorsal organ 3 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002656 ! papilla of dorsal organ (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00002660 name: papilla of dorsal organ 4 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002656 ! papilla of dorsal organ (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00002661 name: papilla of dorsal organ 5 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002656 ! papilla of dorsal organ (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00002662 name: papilla of dorsal organ 6 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002656 ! papilla of dorsal organ (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00002663 name: monoscolopidial chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Chordotonal organ with a single scolopidium." [FBC:DOS] subset: cur ! cur synonym: "ch1" RELATED [] is_a: UBERON:0001038 ! chordotonal organ [Term] id: FBbt:00002664 name: intercalary segment sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some intercalary segment (FBbt:00000010)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000020 ! sense organ relationship: part_of FBbt:00000010 ! intercalary segment (Drosophila) [Term] id: FBbt:00002665 name: hypopharyngeal sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Multiply innervated sensillum, composed of an anterior and a posterior sensillum, located on the floor of the larval pharynx. It is innervated by 3 or 4 neurons whose axons join an anteriorly directed bundle that joins the labral nerve." [FlyBase:FBrf0045366, FlyBase:FBrf0074007, FlyBase:FBrf0075072, FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Organ X" RELATED [] synonym: "PPS" RELATED [FlyBase:FBrf0147119] synonym: "X-organ of Keilin" RELATED [] synonym: "hpo" RELATED [] synonym: "larval pharyngeal sense organ" RELATED [] synonym: "posterior pharyngeal sensilla" RELATED [FlyBase:FBrf0147119] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) is_a: FBbt:00007243 ! embryonic/larval foregut sensillum (Drosophila) relationship: develops_from FBbt:00016001 ! hypopharyngeal sense organ primordium (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00002666 name: anteroventral group sensillum (Drosophila) namespace: fly_anatomy.ontology def: "One of a group of three sensilla in the anterior of the pharynx." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007243 ! embryonic/larval foregut sensillum (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00002667 name: anteroventral group sensillum V1 (Drosophila) namespace: fly_anatomy.ontology def: "Multiply innervated sensillum of the anteroventral group of the larval pharynx. It has a single pore, plugged with amorphous material and is innervated by 9 dendrites in three groups, each group within a cuticular sheath." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002666 ! anteroventral group sensillum (Drosophila) [Term] id: FBbt:00002668 name: anteroventral group sensillum V2 (Drosophila) namespace: fly_anatomy.ontology def: "Unidendritic sensillum of the anteroventral group of the larval pharynx located in a pit lateral to V1. It has a tuft of hair at its distal tip and its dendrite has a tubular body." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002666 ! anteroventral group sensillum (Drosophila) [Term] id: FBbt:00002669 name: anteroventral group sensillum V3 (Drosophila) namespace: fly_anatomy.ontology def: "Unidendritic sensillum of the anteroventral group of the larval pharynx located in a pit lateral to V1. It has a tuft of hair at its distal tip and its dendrite has a tubular body." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002666 ! anteroventral group sensillum (Drosophila) [Term] id: FBbt:00002670 name: dorsal group sensillum (Drosophila) namespace: fly_anatomy.ontology def: "One of a group of 6 sensilla in the pharynx between the antero-ventral group and posterio-lateral sensillum V4." [FlyBase:FBrf0074007] subset: cur ! cur synonym: "dorsal group of sensillum" RELATED [] is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007243 ! embryonic/larval foregut sensillum (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00002671 name: dorsal group sensillum D1 (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the dorsal group of the larval pharynx, innervated by 2 dendrites." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002670 ! dorsal group sensillum (Drosophila) [Term] id: FBbt:00002672 name: dorsal group sensillum D2 (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the dorsal group of the larval pharynx, innervated by a single dendrite." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002670 ! dorsal group sensillum (Drosophila) [Term] id: FBbt:00002673 name: dorsal group sensillum D3 (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the dorsal group of the larval pharynx, innervated by 2 dendrites." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002670 ! dorsal group sensillum (Drosophila) [Term] id: FBbt:00002674 name: dorsal group sensillum D4 (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the dorsal group of the larval pharynx, innervated by 3 dendrites." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002670 ! dorsal group sensillum (Drosophila) [Term] id: FBbt:00002675 name: dorsal group sensillum D5 (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the dorsal group of the larval pharynx, innervated by a single dendrite." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002670 ! dorsal group sensillum (Drosophila) [Term] id: FBbt:00002676 name: dorsal group sensillum D6 (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the dorsal group of the larval pharynx, innervated by a single dendrite." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002670 ! dorsal group sensillum (Drosophila) [Term] id: FBbt:00002677 name: posteriolateral sensillum V4 (Drosophila) namespace: fly_anatomy.ontology def: "A sensillum of the larval pharynx that lies posterior to dorsal group of pharyngeal sensilla. It is innervated by 6 dendrites ." [FlyBase:FBrf0074007] comment: Candidate for merge with hypopharyngeal sense organ / X-organ. subset: cur ! cur is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007243 ! embryonic/larval foregut sensillum (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00002678 name: laterohypopharyngeal organ (Drosophila) namespace: fly_anatomy.ontology def: "Sensory organ associated with the larval pharynx and connected to the hypopharyngeal nerve." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] comment: Part relation to ocular segment from Schmidt-Ott et al., 1994, based on relating gene expression during early segmentation to loss of function phenotypes of segmentally expressed genes. subset: cur ! cur synonym: "lho" RELATED [] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) relationship: part_of FBbt:00001866 ! embryonic/larval pharynx (Drosophila) [Term] id: FBbt:00002679 name: dorsolateral papilla (Drosophila) namespace: fly_anatomy.ontology def: "Papilla of the terminal organ. It is located more lateral than the dorsomedial papilla." [FlyBase:FBrf0075072, FlyBase:FBrf0103263] comment: Schmidt-Ott et al., (1994), places this in the intercalary segment. Jurgens et al. (1986), explain that the DLP and DMP are considered to be of different origins to the other 7 papillae of the terminal organ/MxSO because their axons do not join the maxillary nerve and they are found in different locations in certain homeotic mutants. subset: cur ! cur synonym: "dlp" RELATED [] synonym: "dorso-lateral papilla" EXACT [] synonym: "dorsolateral papilla of the antennal sense organ" EXACT [] is_a: FBbt:00002706 ! dorso-lateral group terminal organ sensillum (Drosophila) [Term] id: FBbt:00002680 name: modified sensillum campaniformium of intercalary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002679 ! dorsolateral papilla (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) [Term] id: FBbt:00002681 name: pit sensillum of dlp (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) is_a: FBbt:00005193 ! pit sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00002679 ! dorsolateral papilla (Drosophila) [Term] id: FBbt:00002682 name: sensillum campaniformium of intercalary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) [Term] id: FBbt:00002683 name: cirri (Drosophila) namespace: fly_anatomy.ontology def: "Cuticular specialization consisting of rows of serrations found at the anterior tip of the larva." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "maxillary cirri" EXACT [] synonym: "rostral hairs" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001739 ! larval maxillary segment (Drosophila) [Term] id: FBbt:00002684 name: associated organ (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of 4-6 sensory neurons attached to the basal aspect of neurons belonging to the terminal organ. These neurons have no associated cuticular structure and do not have the typical morphology of bipolar sensory neurons." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] subset: cur ! cur synonym: "ao" RELATED [] is_a: FBbt:00007335 ! embryonic/larval intercalary segment sense organ (Drosophila) relationship: part_of FBbt:00001736 ! larval intercalary segment (Drosophila) [Term] id: FBbt:00002685 name: larval mandibular segment sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval sense organ (FBbt:00002639) that is part of some larval mandibular segment (FBbt:00001738)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval mandibular segment sensillum" EXACT [] is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: part_of FBbt:00001738 ! larval mandibular segment (Drosophila) [Term] id: FBbt:00002686 name: papilla organ (Drosophila) namespace: fly_anatomy.ontology def: "Multiply innervated sensillum of the lateral atrial wall of the larval foregut." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "pao" RELATED [] is_a: FBbt:00002685 ! larval mandibular segment sensillum (Drosophila) is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) is_a: FBbt:00007243 ! embryonic/larval foregut sensillum (Drosophila) relationship: part_of FBbt:00001738 ! larval mandibular segment (Drosophila) relationship: part_of FBbt:00005615 ! atrium (Drosophila) [Term] id: FBbt:00002687 name: anterior pharyngeal organ (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the lateral part of the embryonic/larval dorsal pouch (Campos-Ortega and Hartenstein, 1997). It contains a single neuron (first seen at embryonic stage 15) that is located dorsal to Bolwig's nerve (at stages 16-17) and fasciculates with the lateropharyngeal nerve (SN-V)." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] comment: Schmidt-Ott et al., (1994) tentatively assign this to the mandibular segment on the basis of its fasciculation pattern. This evidence is much weaker than the genetic evidence they use to determine the segmental identity of other head sensilla. subset: cur ! cur synonym: "apo" RELATED [] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) is_a: FBbt:00002685 ! larval mandibular segment sensillum (Drosophila) relationship: part_of FBbt:00001738 ! larval mandibular segment (Drosophila) relationship: part_of FBbt:00001857 ! embryonic/larval dorsal pouch (Drosophila) [Term] id: FBbt:00002688 name: lateropharyngeal organ (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the lateral fold of the dorsal pouch. It contains 2 or 3 sensory neurons." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "lpo" EXACT [] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) is_a: FBbt:00002685 ! larval mandibular segment sensillum (Drosophila) relationship: part_of FBbt:00001738 ! larval mandibular segment (Drosophila) relationship: part_of FBbt:00001857 ! embryonic/larval dorsal pouch (Drosophila) [Term] id: FBbt:00002689 name: larval maxillary segment sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some larval maxillary segment (FBbt:00001739)." [FBC:auto_generated_definition] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "larval maxillary segment sense organ" EXACT [] is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: develops_from FBbt:00005618 ! embryonic maxillary sensory complex (Drosophila) relationship: part_of FBbt:00001739 ! larval maxillary segment (Drosophila) [Term] id: FBbt:00002690 name: terminal organ (Drosophila) namespace: fly_anatomy.ontology def: "External compound sense organ of the antenno-maxillary complex of the larval head consisting of a distal group of 11 sensilla and a ventral group of 3 sensilla. Neurons of the terminal organ connect with the larval maxillary nerve and terminate in area 2 of the subesophageal ganglion." [FlyBase:FBrf0047373, FlyBase:FBrf0074007, FlyBase:FBrf0089570, FlyBase:FBrf0201176] comment: Evidence for maxillary segment origin comes from Schmidt-Ott et al., 1994. subset: cur ! cur synonym: "Maxillarorgan" RELATED [] synonym: "MxSO" EXACT [] synonym: "larval maxillary sense organ" EXACT [] synonym: "maxillary element" RELATED [] synonym: "terminal organ" RELATED [] synonym: "to" RELATED [] is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) is_a: FBbt:00007235 ! external compound sense organ (Drosophila) relationship: part_of FBbt:00001739 ! larval maxillary segment (Drosophila) relationship: part_of FBbt:00002640 ! antenno-maxillary complex (Drosophila) [Term] id: FBbt:00002691 name: distal group terminal organ sensillum (Drosophila) namespace: fly_anatomy.ontology def: "One of a group of 11 sensilla arranged in a circle in the distal region of the terminal organ." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "distal group of to sensillum" RELATED [] is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00002690 ! terminal organ (Drosophila) [Term] id: FBbt:00002692 name: sensillum campaniformium of distal group (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "P" RELATED [] is_a: FBbt:00002691 ! distal group terminal organ sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) [Term] id: FBbt:00002693 name: sensillum campaniformium P1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002692 ! sensillum campaniformium of distal group (Drosophila) [Term] id: FBbt:00002694 name: sensillum campaniformium P2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002692 ! sensillum campaniformium of distal group (Drosophila) [Term] id: FBbt:00002695 name: sensillum campaniformium P3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002692 ! sensillum campaniformium of distal group (Drosophila) [Term] id: FBbt:00002696 name: knob sensillum of distal group (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "K" RELATED [] is_a: FBbt:00002691 ! distal group terminal organ sensillum (Drosophila) is_a: FBbt:00005194 ! knob sensillum (Drosophila) [Term] id: FBbt:00002697 name: knob sensillum K1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002696 ! knob sensillum of distal group (Drosophila) [Term] id: FBbt:00002698 name: knob sensillum K2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002696 ! knob sensillum of distal group (Drosophila) [Term] id: FBbt:00002699 name: spot sensillum S1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002691 ! distal group terminal organ sensillum (Drosophila) is_a: FBbt:00005195 ! spot sensillum (Drosophila) [Term] id: FBbt:00002700 name: pit sensillum of distal group (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "T" RELATED [] is_a: FBbt:00002691 ! distal group terminal organ sensillum (Drosophila) is_a: FBbt:00005193 ! pit sensillum (Drosophila) [Term] id: FBbt:00002701 name: pit sensillum T1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002700 ! pit sensillum of distal group (Drosophila) [Term] id: FBbt:00002702 name: pit sensillum T2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002700 ! pit sensillum of distal group (Drosophila) [Term] id: FBbt:00002703 name: pit sensillum T3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002700 ! pit sensillum of distal group (Drosophila) [Term] id: FBbt:00002704 name: pit sensillum T4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002700 ! pit sensillum of distal group (Drosophila) [Term] id: FBbt:00002705 name: pit sensillum T5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002700 ! pit sensillum of distal group (Drosophila) [Term] id: FBbt:00002706 name: dorso-lateral group terminal organ sensillum (Drosophila) namespace: fly_anatomy.ontology def: "One of 3 dorso-laterally located sensilla of the terminal organ." [FlyBase:FBrf0045366, FlyBase:FBrf0089570] comment: Jurgens et al. (1986), explain that the DLP and DMP are considered to be of different origins to the other 7 papillae of the terminal organ/MxSO because their axons do not join the maxillary nerve and they are found in different locations in certain homeotic mutants. subset: cur ! cur synonym: "dorso-lateral group of to sensillum" EXACT [] is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00002690 ! terminal organ (Drosophila) [Term] id: FBbt:00002707 name: ventral organ (Drosophila) namespace: fly_anatomy.ontology def: "External compound sense organ of the antenno-maxillary complex of the larval head, located amongst the cirri. It contains three 'knob-like' sensilla, one bi-dendritic and two mono-dendritic. Neurons of the ventral organ connect with the larval maxillary nerve and terminate in area 2 of the subesophageal ganglion." [FlyBase:FBrf0074007, FlyBase:FBrf0075072, FlyBase:FBrf0089570, FlyBase:FBrf0201176] comment: Evidence for maxillary segment origin comes from Schmidt-Ott et al., 1994. There is some disagreement about the number of sensilla in the ventral organ: Campos-Ortega and Hartenstein, 1997, mention only 3 - one with two neurons and the other two with one each; Singh and Singh, 1984, provide evidence for 5 sensilla, 4 innervated by one neuron, the other by four neurons. This ontology follows Singh and Singh, 1984. subset: cur ! cur synonym: "vo" RELATED [] is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) is_a: FBbt:00007235 ! external compound sense organ (Drosophila) relationship: part_of FBbt:00001739 ! larval maxillary segment (Drosophila) relationship: part_of FBbt:00002640 ! antenno-maxillary complex (Drosophila) [Term] id: FBbt:00002708 name: ventral organ sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any external sensillum (FBbt:00007231) that is part of some ventral organ (FBbt:00002707)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "V" RELATED [] is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) is_a: FBbt:00007231 ! external sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00002707 ! ventral organ (Drosophila) [Term] id: FBbt:00002709 name: ventral organ sensillum V1 (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the ventral organ innervated by 4 dendrites." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002708 ! ventral organ sensillum (Drosophila) relationship: part_of FBbt:00002707 ! ventral organ (Drosophila) [Term] id: FBbt:00002710 name: ventral organ sensillum V2 (Drosophila) namespace: fly_anatomy.ontology def: "Mono-dendritic sensillum of the ventral organ." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002708 ! ventral organ sensillum (Drosophila) relationship: part_of FBbt:00002707 ! ventral organ (Drosophila) [Term] id: FBbt:00002711 name: ventral organ sensillum V3 (Drosophila) namespace: fly_anatomy.ontology def: "Mono-dendritic sensillum of the ventral organ, linked to the exterior by a pore. Putative taste sensillum (Singh, 1997)." [FlyBase:FBrf0074007, FlyBase:FBrf0100249] subset: cur ! cur is_a: FBbt:00002708 ! ventral organ sensillum (Drosophila) is_a: UBERON:0003212 ! gustatory organ relationship: part_of FBbt:00002707 ! ventral organ (Drosophila) [Term] id: FBbt:00002712 name: ventral organ sensillum V4 (Drosophila) namespace: fly_anatomy.ontology def: "Mono-dendritic sensillum of the ventral organ." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002708 ! ventral organ sensillum (Drosophila) relationship: part_of FBbt:00002707 ! ventral organ (Drosophila) [Term] id: FBbt:00002713 name: ventral organ sensillum V5 (Drosophila) namespace: fly_anatomy.ontology def: "Mono-dendritic sensillum of the ventral organ." [FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00002708 ! ventral organ sensillum (Drosophila) relationship: part_of FBbt:00002707 ! ventral organ (Drosophila) [Term] id: FBbt:00002714 name: dorsal pit (Drosophila) namespace: fly_anatomy.ontology def: "One of 14 innervated pits located in two groups of 7 on either side of the dorsal midline in the dorsal-most part of the head. There is no associated external cuticular sensory structure." [FlyBase:FBrf0034076, FlyBase:FBrf0074007] subset: cur ! cur is_a: FBbt:00005193 ! pit sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00002715 name: knob in pit sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Paired external sensillum situated dorso-laterally on the head and consisting of a knob shaped cuticular structure located in a pit and innervated by 3 dendrites - one terminating at its base and the other two extending into the knob. Putative combined mechanoreceptor (Singh and Singh, 1984) and taste sensillum (Singh, 1997)." [FlyBase:FBrf0074007, FlyBase:FBrf0100249] subset: cur ! cur synonym: "KIP" EXACT [FlyBase:FBrf0074007] is_a: FBbt:00005156 ! mechanosensory sensory organ (Drosophila) is_a: FBbt:00005193 ! pit sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) is_a: UBERON:0003212 ! gustatory organ relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00002716 name: embryonic/larval maxillary chordotonal organ with two scolopidia (Drosophila) namespace: fly_anatomy.ontology def: "Chordotonal organ of the larval maxillary segment that possesses two scolopidia." [FlyBase:FBrf0075072] subset: cur ! cur synonym: "ch2" RELATED [] synonym: "chordotonal organ with two scolopidia" RELATED [] is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ [Term] id: FBbt:00002717 name: hypomaxillary organ (Drosophila) namespace: fly_anatomy.ontology def: "A multiply innervated sensillum of the larval head, located next to the labial organ whose axons project into the maxillary nerve." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] subset: cur ! cur synonym: "hmo" RELATED [] is_a: FBbt:00002689 ! larval maxillary segment sense organ (Drosophila) relationship: part_of FBbt:00001739 ! larval maxillary segment (Drosophila) [Term] id: FBbt:00002718 name: embryonic/larval labial segment sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval labial segment (FBbt:00001740)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval labial segment sensillum" EXACT [] is_a: FBbt:00002721 ! labial sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00001740 ! larval labial segment (Drosophila) [Term] id: FBbt:00002719 name: hypophysis (Drosophila) namespace: fly_anatomy.ontology def: "Paired compound sense organ of the larval head, located on the floor of the atrium, anterior to the opening of the salivary duct. It is composed of 4 sensilla. Sensory neurons travel via the labral nerve and innervate area 2 of the embryonic/larval subesophageal ganglion." [FlyBase:FBrf0089570, FlyBase:FBrf0201176] subset: cur ! cur synonym: "VPS" RELATED [FlyBase:FBrf0147119] synonym: "hy" RELATED [] synonym: "hypophyse" RELATED [FlyBase:FBrf0089570] synonym: "hypophyseal sense organ" RELATED [] synonym: "labial sensory complex" RELATED [FlyBase:FBrf0089570] synonym: "labial sensory organ" RELATED [] synonym: "lbso" RELATED [] synonym: "ventral pharyngeal sensilla" RELATED [FlyBase:FBrf0147119] synonym: "ventral pharyngeal sensilla V1-V4" RELATED [FlyBase:FBrf0074007] is_a: FBbt:00007235 ! external compound sense organ (Drosophila) is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: part_of FBbt:00007279 ! labial complex (Drosophila) [Term] id: FBbt:00002720 name: embryonic/larval labial organ (Drosophila) namespace: fly_anatomy.ontology def: "A compound external sense organ of the late embryo or larva consisting of 3 sensilla, one with 3 neurons and the others with one each." [FlyBase:FBrf0034076, FlyBase:FBrf0089570] subset: cur ! cur synonym: "labial sense organ" RELATED [] synonym: "lbo" RELATED [] synonym: "lower lip sense organ" RELATED [] is_a: FBbt:00007235 ! external compound sense organ (Drosophila) is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: part_of FBbt:00007279 ! labial complex (Drosophila) [Term] id: FBbt:00002721 name: labial sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some labial segment (FBbt:00000014)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000963 ! head sensillum relationship: part_of FBbt:00000014 ! labial segment (Drosophila) [Term] id: FBbt:00002722 name: labial sensillum 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007282 ! labial organ sensillum (Drosophila) relationship: part_of FBbt:00002720 ! embryonic/larval labial organ (Drosophila) [Term] id: FBbt:00002723 name: labial sensillum 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007282 ! labial organ sensillum (Drosophila) relationship: part_of FBbt:00002720 ! embryonic/larval labial organ (Drosophila) [Term] id: FBbt:00002724 name: labial sensillum 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007282 ! labial organ sensillum (Drosophila) relationship: part_of FBbt:00002720 ! embryonic/larval labial organ (Drosophila) [Term] id: FBbt:00002725 name: embryonic/larval prothoracic sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval prothoracic sensillum" EXACT [] is_a: FBbt:00007244 ! embryonic/larval thoracic sensillum (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002726 name: prothoracic slit papilla sensillum px (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "vc2a" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005197 ! slit papilla sensillum (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002727 name: prothoracic slit papilla sensillum py (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "vc2b" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005197 ! slit papilla sensillum (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002728 name: prothoracic basiconical sensillum dbd (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002729 name: prothoracic dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "h2" RELATED [] synonym: "shD" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002730 name: prothoracic dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "h3" RELATED [] synonym: "shE" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002731 name: prothoracic dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "p5" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002732 name: prothoracic dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p6(7)" RELATED [] synonym: "s" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002733 name: prothoracic dorsal sensillum campaniformium dc3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p7(8)" RELATED [] synonym: "s" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002734 name: prothoracic dorsal triscolopidial chordotonal organ dch3 (Drosophila) namespace: fly_anatomy.ontology def: "Triscolopidial chordotonal organ located in the dorsal sensory cluster of the embryonic/larval prothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "dch3x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00004248 ! prothoracic chordotonal organ (Drosophila) is_a: FBbt:00007238 ! triscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002735 name: prothoracic lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "H" RELATED [] synonym: "h1" RELATED [] synonym: "shC" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007302 ! embryonic/larval prothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002736 name: prothoracic lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lp1" RELATED [] synonym: "p3" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007302 ! embryonic/larval prothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002737 name: prothoracic lateral sensillum campaniformium lc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lp2" RELATED [] synonym: "p4" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007302 ! embryonic/larval prothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002738 name: prothoracic lateral triscolopidial chordotonal organ lch3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lch3x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00004248 ! prothoracic chordotonal organ (Drosophila) is_a: FBbt:00007238 ! triscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007302 ! embryonic/larval prothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002739 name: prothoracic ventral Kolbchen vbd (Drosophila) namespace: fly_anatomy.ontology def: "Kolbchen ventrally located in the embryonic/larval prothorax. It is part of the prothoracic ventral sensory cluster." [FlyBase:FBrf0041814] subset: cur ! cur synonym: "shB" RELATED [] synonym: "vk" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005199 ! Kolbchen (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002740 name: prothoracic ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p1" RELATED [] synonym: "vp1" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002741 name: prothoracic ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p2" RELATED [] synonym: "vp2" RELATED [] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002742 name: prothoracic ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "vch1x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00002663 ! monoscolopidial chordotonal organ (Drosophila) is_a: FBbt:00004248 ! prothoracic chordotonal organ (Drosophila) relationship: part_of FBbt:00007306 ! embryonic/larval prothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002743 name: T1 beard (Drosophila) namespace: fly_anatomy.ontology def: "Cluster of fine denticles found at the posterior edge of the ventral surface of the larval prothoracic (T1) segment." [FlyBase:FBrf0064786, FlyBase:FBrf0091305] subset: cur ! cur synonym: "prothoracic beard" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002744 name: prothoracic dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal hair (FBbt:00004980) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004980 ! dorsal hair (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002745 name: prothoracic ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any denticle belt (FBbt:00005201) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005201 ! denticle belt (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00002746 name: larval mesothoracic sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval mesothoracic sensillum" EXACT [] is_a: FBbt:00007244 ! embryonic/larval thoracic sensillum (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00002747 name: mesothoracic dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "h2" RELATED [] synonym: "shD" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007298 ! embryonic/larval mesothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002748 name: mesothoracic dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "h3" RELATED [] synonym: "shE" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007298 ! embryonic/larval mesothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002749 name: mesothoracic dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "p5" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007298 ! embryonic/larval mesothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002750 name: mesothoracic dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p6(7)" RELATED [] synonym: "s" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007298 ! embryonic/larval mesothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002751 name: mesothoracic dorsal sensillum campaniformium dc3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p7(8)" RELATED [] synonym: "s" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007298 ! embryonic/larval mesothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002752 name: mesothoracic dorsal triscolopidial chordotonal organ dch3 (Drosophila) namespace: fly_anatomy.ontology def: "Triscolopidial chordotonal organ located in the dorsal sensory cluster of the embryonic/larval mesothoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "dch3x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00007238 ! triscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007298 ! embryonic/larval mesothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00002753 name: mesothoracic lateral Kolbchen lbd (Drosophila) namespace: fly_anatomy.ontology def: "Any Kolbchen (FBbt:00005199) that is part of some embryonic/larval mesothoracic lateral sensory cluster (FBbt:00007303)." [FBC:auto_generated_definition, FlyBase:FBrf0089570] subset: cur ! cur synonym: "T2 lateral black dot" EXACT [] synonym: "T2 lbd" RELATED [] synonym: "ldb" RELATED [] synonym: "lk" RELATED [] synonym: "mesothoracic lateral Kolbchen lateral black dot" EXACT [] synonym: "shB" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005199 ! Kolbchen (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002754 name: mesothoracic lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "h1" RELATED [] synonym: "shC" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002755 name: mesothoracic lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p3" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002756 name: mesothoracic lateral sensillum campaniformium lc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p4" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007303 ! embryonic/larval mesothoracic lateral sensory cluster (Drosophila) [Term] id: FBbt:00002757 name: mesothoracic ventral Kolbchen vbd (Drosophila) namespace: fly_anatomy.ontology def: "Any Kolbchen (FBbt:00005199) that is part of some embryonic/larval mesothoracic ventral sensory cluster (FBbt:00007307)." [FBC:auto_generated_definition, FlyBase:FBrf0089570] subset: cur ! cur synonym: "T2 vbd" RELATED [] synonym: "T2 ventral Kolbchen vbd" EXACT [] synonym: "mesothoracic ventral Kolbchen ventral black dot" EXACT [] synonym: "shB" RELATED [] synonym: "vk" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005199 ! Kolbchen (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002758 name: mesothoracic ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p1" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002759 name: mesothoracic ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p2" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002760 name: mesothoracic ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "vch1x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00002663 ! monoscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007307 ! embryonic/larval mesothoracic ventral sensory cluster (Drosophila) [Term] id: FBbt:00002761 name: mesothoracic Keilin's organ (Drosophila) namespace: fly_anatomy.ontology def: "Any Keilin's organ (FBbt:00005198) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "KO" RELATED [] synonym: "ko" RELATED [] synonym: "shA" RELATED [] is_a: FBbt:00002746 ! larval mesothoracic sensillum (Drosophila) is_a: FBbt:00005198 ! Keilin's organ (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00002762 name: mesothoracic dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal hair (FBbt:00004980) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004980 ! dorsal hair (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00002763 name: mesothoracic ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any denticle belt (FBbt:00005201) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005201 ! denticle belt (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00002764 name: larval metathoracic sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval metathoracic sensillum" EXACT [] is_a: FBbt:00007244 ! embryonic/larval thoracic sensillum (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002765 name: metathoracic dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "h2" RELATED [] synonym: "shD" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002766 name: metathoracic dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "h3" RELATED [] synonym: "shE" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002767 name: metathoracic dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b" RELATED [] synonym: "p5" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002768 name: metathoracic dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p6(7)" RELATED [] synonym: "s" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002769 name: metathoracic dorsal sensillum campaniformium dc3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p7(8)" RELATED [] synonym: "s" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002770 name: metathoracic dorsal triscolopidial chordotonal organ dch3 (Drosophila) namespace: fly_anatomy.ontology def: "Triscolopidial chordotonal organ located in the dorsal sensory cluster of the embryonic/larval metathoracic segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "dch3x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00007238 ! triscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002771 name: metathoracic lateral Kolbchen lbd (Drosophila) namespace: fly_anatomy.ontology def: "Any lateral Kolbchen lbd (FBbt:00100361) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition, FlyBase:FBrf0089570] subset: cur ! cur synonym: "T3 lateral Kolbchen lbd" EXACT [] synonym: "T3 lbd" RELATED [] synonym: "lbd" RELATED [] synonym: "lk" RELATED [] synonym: "metathoracic lateral Kolbchen lateral black dot" EXACT [] synonym: "shB" RELATED [] is_a: FBbt:00002775 ! metathoracic ventral Kolbchen vbd (Drosophila) is_a: FBbt:00100361 ! lateral Kolbchen lbd (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002772 name: metathoracic lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "h1" RELATED [] synonym: "shC" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002773 name: metathoracic lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p3" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002774 name: metathoracic lateral sensillum campaniformium lc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p4" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002775 name: metathoracic ventral Kolbchen vbd (Drosophila) namespace: fly_anatomy.ontology def: "Any Kolbchen (FBbt:00005199) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition, FlyBase:FBrf0089570] subset: cur ! cur synonym: "T3 vbd" RELATED [] synonym: "T3 ventral Kolbchen vbd" EXACT [] synonym: "metathoracic ventral Kolbchen ventral black dot" EXACT [] synonym: "shB" RELATED [] synonym: "vk" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005199 ! Kolbchen (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002776 name: metathoracic ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p1" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002777 name: metathoracic ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "p2" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002778 name: metathoracic ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "vch1x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00002663 ! monoscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002779 name: metathoracic Keilin's organ (Drosophila) namespace: fly_anatomy.ontology def: "Any Keilin's organ (FBbt:00005198) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "KO" RELATED [] synonym: "ko" RELATED [] synonym: "shA" RELATED [] is_a: FBbt:00002764 ! larval metathoracic sensillum (Drosophila) is_a: FBbt:00005198 ! Keilin's organ (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002780 name: metathoracic dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any dorsal hair (FBbt:00004980) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004980 ! dorsal hair (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002781 name: metathoracic ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any denticle belt (FBbt:00005201) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005201 ! denticle belt (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00002782 name: larval abdominal sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval abdomen (FBbt:00001746)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval abdominal sensillum" EXACT [] is_a: FBbt:00007240 ! embryonic/larval sensillum (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00002783 name: abdominal dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002791 def: "Small, mono-innervated hair of the dorsal sensory complex of larval abdominal segments 1-7." [FlyBase:FBrf0045359, FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] comment: Note that this organ (identified as the anterior organ in the dh1-dh2 organ pair) is reported to be tri-innervated in Campos-Ortega and Hartenstein, 1997. The formally separate term 'h3' (FBbt:00002791) has been merged with dh1: It is clear from comparing the diagrams in Dambly-Chaudiere and Ghysen (1986) with those http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp2 and Campos-Ortega and Hartenstein, (1997), that the authors are referring to the same sensillum. subset: cur ! cur synonym: "abdominal dorsal sensillum trichodeum h3" EXACT [] synonym: "b+st" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "h3" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "h3/4" BROAD [FlyBase:FBrf0089570] synonym: "sensory hair F" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "shF" BROAD [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002784 name: abdominal 1 dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002792 def: "Any abdominal dorsal sensillum trichodeum dh1 (FBbt:00002783) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 1 dorsal sensillum trichodeum h3" EXACT [] is_a: FBbt:00002783 ! abdominal dorsal sensillum trichodeum dh1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002785 name: abdominal 2 dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002793 def: "Any abdominal dorsal sensillum trichodeum dh1 (FBbt:00002783) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 2 dorsal sensillum trichodeum h3" EXACT [] is_a: FBbt:00002783 ! abdominal dorsal sensillum trichodeum dh1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002786 name: abdominal 3 dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002794 def: "Any abdominal dorsal sensillum trichodeum dh1 (FBbt:00002783) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 3 dorsal sensillum trichodeum h3" EXACT [] is_a: FBbt:00002783 ! abdominal dorsal sensillum trichodeum dh1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002787 name: abdominal 4 dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002795 def: "Any abdominal dorsal sensillum trichodeum dh1 (FBbt:00002783) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 4 dorsal sensillum trichodeum h3" EXACT [] is_a: FBbt:00002783 ! abdominal dorsal sensillum trichodeum dh1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002788 name: abdominal 5 dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002796 def: "Any abdominal dorsal sensillum trichodeum dh1 (FBbt:00002783) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 5 dorsal sensillum trichodeum h3" EXACT [] is_a: FBbt:00002783 ! abdominal dorsal sensillum trichodeum dh1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002789 name: abdominal 6 dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002797 def: "Any abdominal dorsal sensillum trichodeum dh1 (FBbt:00002783) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 6 dorsal sensillum trichodeum h3" EXACT [] is_a: FBbt:00002783 ! abdominal dorsal sensillum trichodeum dh1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002790 name: abdominal 7 dorsal sensillum trichodeum dh1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002798 def: "Any abdominal dorsal sensillum trichodeum dh1 (FBbt:00002783) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "abdominal 7 dorsal sensillum trichodeum h3" EXACT [] is_a: FBbt:00002783 ! abdominal dorsal sensillum trichodeum dh1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002799 name: abdominal dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "A dorsal, mono-innervated campaniform sensillum of larval abdominal segments 1-7." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] subset: cur ! cur synonym: "dorsal papilla 1" EXACT [] synonym: "dp1" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] synonym: "p8" BROAD [] synonym: "s" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp1] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002800 name: abdominal 1 dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc1 (FBbt:00002799) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002801 name: abdominal 2 dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc1 (FBbt:00002799) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002802 name: abdominal 3 dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc1 (FBbt:00002799) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002803 name: abdominal 4 dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc1 (FBbt:00002799) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002804 name: abdominal 5 dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc1 (FBbt:00002799) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002805 name: abdominal 6 dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc1 (FBbt:00002799) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002806 name: abdominal 7 dorsal sensillum campaniformium dc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc1 (FBbt:00002799) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002799 ! abdominal dorsal sensillum campaniformium dc1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002807 name: abdominal dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "A dorsal, mono-innervated campaniform sensillum of larval abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp2] subset: cur ! cur synonym: "b" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp2] synonym: "dorsal papilla 2" EXACT [] synonym: "dp2" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp2] synonym: "p9" RELATED [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#dp2] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002808 name: abdominal 1 dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc2 (FBbt:00002807) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002809 name: abdominal 2 dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc2 (FBbt:00002807) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002810 name: abdominal 3 dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc2 (FBbt:00002807) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002811 name: abdominal 4 dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc2 (FBbt:00002807) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002812 name: abdominal 5 dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc2 (FBbt:00002807) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002813 name: abdominal 6 dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc2 (FBbt:00002807) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002814 name: abdominal 7 dorsal sensillum campaniformium dc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal sensillum campaniformium dc2 (FBbt:00002807) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002807 ! abdominal dorsal sensillum campaniformium dc2 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002815 name: abdominal basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002442 ! abdominal dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002816 name: abdominal 1 basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002443 ! abdominal 1 dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal 1 dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002817 name: abdominal 2 basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002444 ! abdominal 2 dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal 2 dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002818 name: abdominal 3 basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002445 ! abdominal 3 dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal 3 dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002819 name: abdominal 4 basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002446 ! abdominal 4 dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal 4 dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002820 name: abdominal 5 basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002447 ! abdominal 5 dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal 5 dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002821 name: abdominal 6 basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002448 ! abdominal 6 dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal 6 dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002822 name: abdominal 7 basiconical sensillum dbd namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00002449 ! abdominal 7 dorsal bipolar neuron dbp (Drosophila) consider: FBbt:00002728 ! prothoracic basiconical sensillum dbd (Drosophila) comment: This term was obsoleted because abdominal basiconical sensillum dbd does not exist. Possible replacement terms are: prothoracic basiconical sensillum dbd, the only segment with a dorsal group basiconic sensillum is t1; abdominal 7 dorsal bipolar neuron dbp, which is referred to as dbd in some publications. subset: cur ! cur [Term] id: FBbt:00002823 name: abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Monoscolopidial chordotonal organ of the lateral sensory cluster of larval segments A1-7. There is one of these organs per cluster. It is innervated by the abdominal v'ch1 neuron." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lch1] subset: cur ! cur synonym: "lch1x" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lch1] synonym: "v'ch1" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lch1] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00002663 ! monoscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002824 name: abdominal 1 lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral monoscolopidial chordotonal organ lch1 (FBbt:00002823) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002825 name: abdominal 2 lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral monoscolopidial chordotonal organ lch1 (FBbt:00002823) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002826 name: abdominal 3 lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral monoscolopidial chordotonal organ lch1 (FBbt:00002823) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002827 name: abdominal 4 lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral monoscolopidial chordotonal organ lch1 (FBbt:00002823) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002828 name: abdominal 5 lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral monoscolopidial chordotonal organ lch1 (FBbt:00002823) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002829 name: abdominal 6 lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral monoscolopidial chordotonal organ lch1 (FBbt:00002823) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002830 name: abdominal 7 lateral monoscolopidial chordotonal organ lch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral monoscolopidial chordotonal organ lch1 (FBbt:00002823) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002831 name: abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Pentascolopidial chordotonal organ located in the lateral sensory cluster of the embryonic/larval abdominal segment. Dendrites from this chordotonal organ point dorsoposteriorly." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "CHO5" RELATED [FlyBase:FBrf0002274] synonym: "lch5x" RELATED [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00007237 ! pentascolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002832 name: abdominal 1 lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral pentascolopidial chordotonal organ lch5 (FBbt:00002831) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002833 name: abdominal 2 lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral pentascolopidial chordotonal organ lch5 (FBbt:00002831) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002834 name: abdominal 3 lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral pentascolopidial chordotonal organ lch5 (FBbt:00002831) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002835 name: abdominal 4 lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral pentascolopidial chordotonal organ lch5 (FBbt:00002831) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002836 name: abdominal 5 lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral pentascolopidial chordotonal organ lch5 (FBbt:00002831) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002837 name: abdominal 6 lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral pentascolopidial chordotonal organ lch5 (FBbt:00002831) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002838 name: abdominal 7 lateral pentascolopidial chordotonal organ lch5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral pentascolopidial chordotonal organ lch5 (FBbt:00002831) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002839 name: abdominal lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Lateral mono-innervated hair of larval abdominal segments 1-7." [FlyBase:FBrf0045361, FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lh1] comment: Campos-Ortega and Hartenstein, 1997, state in table 9.1 that lh1 is innervated by lesA and innervates 'h1'. This appears to be a misrepresentation of Ghysen et al., (1986) as this paper doesn't appear to make that claim. sr080210. subset: cur ! cur synonym: "H" BROAD [] synonym: "h2" BROAD [] synonym: "sensory hair C" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] synonym: "shC" BROAD [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002840 name: abdominal 1 lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh1 (FBbt:00002839) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002841 name: abdominal 2 lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh1 (FBbt:00002839) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002842 name: abdominal 3 lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh1 (FBbt:00002839) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002843 name: abdominal 4 lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh1 (FBbt:00002839) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002844 name: abdominal 5 lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh1 (FBbt:00002839) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002845 name: abdominal 6 lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh1 (FBbt:00002839) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002846 name: abdominal 7 lateral sensillum trichodeum lh1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh1 (FBbt:00002839) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002839 ! abdominal lateral sensillum trichodeum lh1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002847 name: abdominal lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Lateral mono-innervated hair of larval abdominal segments 1-7." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lh2] subset: cur ! cur synonym: "b" RELATED [] synonym: "h1" BROAD [] synonym: "sensory hair C" BROAD [] synonym: "shC" RELATED [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002848 name: abdominal 1 lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh2 (FBbt:00002847) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002849 name: abdominal 2 lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh2 (FBbt:00002847) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002850 name: abdominal 3 lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh2 (FBbt:00002847) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002851 name: abdominal 4 lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh2 (FBbt:00002847) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002852 name: abdominal 5 lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh2 (FBbt:00002847) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002853 name: abdominal 6 lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh2 (FBbt:00002847) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002854 name: abdominal 7 lateral sensillum trichodeum lh2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum trichodeum lh2 (FBbt:00002847) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002847 ! abdominal lateral sensillum trichodeum lh2 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002855 name: abdominal lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Lateral mono-innervated papilla of larval abdominal segments 1-7." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lp2] subset: cur ! cur synonym: "lp2" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lp2] synonym: "p7" RELATED [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002856 name: abdominal 1 lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum campaniformium lc1 (FBbt:00002855) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002857 name: abdominal 2 lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum campaniformium lc1 (FBbt:00002855) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002858 name: abdominal 3 lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum campaniformium lc1 (FBbt:00002855) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002859 name: abdominal 4 lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum campaniformium lc1 (FBbt:00002855) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002860 name: abdominal 5 lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum campaniformium lc1 (FBbt:00002855) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002861 name: abdominal 6 lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum campaniformium lc1 (FBbt:00002855) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002862 name: abdominal 7 lateral sensillum campaniformium lc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lateral sensillum campaniformium lc1 (FBbt:00002855) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002855 ! abdominal lateral sensillum campaniformium lc1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002863 name: abdominal ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "A campaniform sensillum of larval abdominal segments 1-7. It is the ventral-most sensillum of these segments, and is innervated by the dendrite of a single neuron - vesA." [FlyBase:FBrf0045359, FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp1] subset: cur ! cur synonym: "p1" EXACT [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] synonym: "vp1" EXACT [FlyBase:FBrf0045357, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002864 name: abdominal 1 ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc1 (FBbt:00002863) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002865 name: abdominal 2 ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc1 (FBbt:00002863) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002866 name: abdominal 3 ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc1 (FBbt:00002863) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002867 name: abdominal 4 ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc1 (FBbt:00002863) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002868 name: abdominal 5 ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc1 (FBbt:00002863) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002869 name: abdominal 6 ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc1 (FBbt:00002863) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002870 name: abdominal 7 ventral sensillum campaniformium vc1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc1 (FBbt:00002863) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002863 ! abdominal ventral sensillum campaniformium vc1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002871 name: abdominal ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located campaniform sensillum of larval abdominal segments 1-7, innervated by the dendrite of a single neuron - vesB. Fasciculates in branch c of the segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0045359, FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp2] subset: cur ! cur synonym: "p2" EXACT [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] synonym: "vp2" EXACT [FlyBase:FBrf0045357, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002872 name: abdominal 1 ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc2 (FBbt:00002871) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002873 name: abdominal 2 ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc2 (FBbt:00002871) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002874 name: abdominal 3 ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc2 (FBbt:00002871) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002875 name: abdominal 4 ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc2 (FBbt:00002871) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002876 name: abdominal 5 ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc2 (FBbt:00002871) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002877 name: abdominal 6 ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc2 (FBbt:00002871) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002878 name: abdominal 7 ventral sensillum campaniformium vc2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc2 (FBbt:00002871) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002871 ! abdominal ventral sensillum campaniformium vc2 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002879 name: abdominal ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located campaniform sensillum of larval abdominal segments 1-7, innervated by the dendrite of a single neuron - vesC. The tormogen (socket) cell of this sensillum is unusual in having numerous short cytoplasmic extensions (Barolo et al., 2000). It fasciculates in branch c of the segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0045359, FlyBase:FBrf0089570, FlyBase:FBrf0132262, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp3] subset: cur ! cur synonym: "p3" EXACT [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] synonym: "vp3" EXACT [FlyBase:FBrf0045357, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002880 name: abdominal 1 ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc3 (FBbt:00002879) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002881 name: abdominal 2 ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc3 (FBbt:00002879) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002882 name: abdominal 3 ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc3 (FBbt:00002879) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002883 name: abdominal 4 ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc3 (FBbt:00002879) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002884 name: abdominal 5 ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc3 (FBbt:00002879) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002885 name: abdominal 6 ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc3 (FBbt:00002879) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002886 name: abdominal 7 ventral sensillum campaniformium vc3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc3 (FBbt:00002879) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002879 ! abdominal ventral sensillum campaniformium vc3 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002887 name: abdominal ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located campaniform sensillum of larval abdominal segments 1-7 buried in a narrow slit of the cuticle among the denticles, innervated by the dendrite of a single neuron - v'esB." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp4a] subset: cur ! cur synonym: "p5" EXACT [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] synonym: "vp4a" EXACT [FlyBase:FBrf0045357, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002888 name: abdominal 1 ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4a (FBbt:00002887) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002889 name: abdominal 2 ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4a (FBbt:00002887) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002890 name: abdominal 3 ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4a (FBbt:00002887) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002891 name: abdominal 4 ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4a (FBbt:00002887) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002892 name: abdominal 5 ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4a (FBbt:00002887) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002893 name: abdominal 6 ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4a (FBbt:00002887) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002894 name: abdominal 7 ventral sensillum campaniformium vc4a (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4a (FBbt:00002887) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002887 ! abdominal ventral sensillum campaniformium vc4a (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002895 name: abdominal ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located campaniform sensillum of larval abdominal segments 1-7, innervated by the dendrite of a single neuron - v'esA." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp4] subset: cur ! cur synonym: "p4" EXACT [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] synonym: "vc4" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] synonym: "vp4" EXACT [FlyBase:FBrf0045357, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002896 name: abdominal 1 ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4b (FBbt:00002895) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002897 name: abdominal 2 ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4b (FBbt:00002895) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002898 name: abdominal 3 ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4b (FBbt:00002895) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002899 name: abdominal 4 ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4b (FBbt:00002895) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002900 name: abdominal 5 ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4b (FBbt:00002895) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002901 name: abdominal 6 ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4b (FBbt:00002895) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002902 name: abdominal 7 ventral sensillum campaniformium vc4b (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc4b (FBbt:00002895) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002895 ! abdominal ventral sensillum campaniformium vc4b (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002903 name: abdominal ventral sensillum campaniformium vc5 (Drosophila) namespace: fly_anatomy.ontology def: "A ventrally located campaniform sensillum of larval abdominal segments 1-7 whose external sensory structure is surrounded by a ruffled annulus and which is innervated by the 2 dendrites of the v'es2 neurons." [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vp4] subset: cur ! cur synonym: "p6" EXACT [FlyBase:FBrf0045359, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] synonym: "vp5" EXACT [FlyBase:FBrf0045357] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002904 name: abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Ventral monoscolopidial chordotonal organ of larval abdominal segments 1-7, innervated by a single neuron - vch1 (vchA)." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vch1] subset: cur ! cur synonym: "vch1x" RELATED [] synonym: "vchA" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00002663 ! monoscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00002905 name: abdominal 1 ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch1 (FBbt:00002904) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002906 name: abdominal 2 ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch1 (FBbt:00002904) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002907 name: abdominal 3 ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch1 (FBbt:00002904) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002908 name: abdominal 4 ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch1 (FBbt:00002904) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002909 name: abdominal 5 ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch1 (FBbt:00002904) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002910 name: abdominal 6 ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch1 (FBbt:00002904) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002911 name: abdominal 7 ventral monoscolopidial chordotonal organ vch1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch1 (FBbt:00002904) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002904 ! abdominal ventral monoscolopidial chordotonal organ vch1 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002912 name: abdominal dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal hair (trichome) of the larval abdominal segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "abdominal dorsal hair" RELATED [] is_a: FBbt:00004980 ! dorsal hair (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00002913 name: abdominal 1 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal trichome (FBbt:00002912) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002914 name: abdominal 2 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal trichome (FBbt:00002912) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002915 name: abdominal 3 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal trichome (FBbt:00002912) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002916 name: abdominal 4 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal trichome (FBbt:00002912) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002917 name: abdominal 5 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal trichome (FBbt:00002912) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002918 name: abdominal 6 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal trichome (FBbt:00002912) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002919 name: abdominal 7 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal trichome (FBbt:00002912) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002920 name: abdominal ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Ventral denticle belt of the larval abdominal segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "abdominal ventral setae belt" RELATED [] is_a: FBbt:00005201 ! denticle belt (Drosophila) [Term] id: FBbt:00002921 name: abdominal 1 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral denticle belt (FBbt:00002920) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00002922 name: abdominal 2 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral denticle belt (FBbt:00002920) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00002923 name: abdominal 3 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral denticle belt (FBbt:00002920) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00002924 name: abdominal 4 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral denticle belt (FBbt:00002920) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00002925 name: abdominal 5 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral denticle belt (FBbt:00002920) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00002926 name: abdominal 6 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral denticle belt (FBbt:00002920) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00002927 name: abdominal 7 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral denticle belt (FBbt:00002920) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00002928 name: embryonic/larval abdominal 8 sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval abdominal segment 8 (FBbt:00001755)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval abdominal 8 sensillum" EXACT [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002929 name: abdominal 8 dorsal sensillum trichodeum DMSOh (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "SO7" RELATED [] synonym: "dmsc" RELATED [] synonym: "sc3" RELATED [] synonym: "sk" RELATED [] synonym: "t7" RELATED [] is_a: FBbt:00002928 ! embryonic/larval abdominal 8 sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002930 name: abdominal 8 dorsal sensillum basiconicum DMSOp (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002928 ! embryonic/larval abdominal 8 sensillum (Drosophila) is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002931 name: abdominal 8 dorsomedial sensillum trichodeum ALSOh (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - t6. subset: cur ! cur is_a: FBbt:00002928 ! embryonic/larval abdominal 8 sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002932 name: abdominal 8 dorsomedial sensillum basiconicum ALSOp (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - t5. subset: cur ! cur is_a: FBbt:00002928 ! embryonic/larval abdominal 8 sensillum (Drosophila) is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002933 name: abdominal 8 lateral chordotonal organ lch3 (Drosophila) namespace: fly_anatomy.ontology def: "Triscolopidial chordotonal organ of larval abdominal segment 8." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00007238 ! triscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002934 name: abdominal 8 ventral papilla vas (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002928 ! embryonic/larval abdominal 8 sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002935 name: spiracular sensory organ (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000432 def: "Sensillum of the embryonic/larval posterior spiracle. It consists of a cluster of branched hairs sharing a common socket. There are four of these per spiracle, arrayed around the edge of the spiracular plate." [FlyBase:FBrf0064787, FlyBase:FBrf0089570] comment: Candidate for merge with spiracular sensillum trichodeum? subset: cur ! cur synonym: "sph" RELATED [] synonym: "spiracular hair" RELATED [] synonym: "spiracular sense organ" EXACT [] synonym: "spiracular sensory hair" EXACT [FlyBase:FBrf0089570] is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) is_a: FBbt:00007240 ! embryonic/larval sensillum (Drosophila) relationship: part_of FBbt:00000427 ! spiracular plate (Drosophila) [Term] id: FBbt:00002936 name: spiracular sensillum trichodeum 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002935 ! spiracular sensory organ (Drosophila) [Term] id: FBbt:00002937 name: spiracular sensillum trichodeum 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002935 ! spiracular sensory organ (Drosophila) [Term] id: FBbt:00002938 name: spiracular sensillum trichodeum 3 (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron whose dendrite innervates spiracular sensillum trichodeum 3." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002935 ! spiracular sensory organ (Drosophila) [Term] id: FBbt:00002939 name: spiracular sensillum trichodeum 4 (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron whose dendrite innervates spiracular sensillum trichodeum 4." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002935 ! spiracular sensory organ (Drosophila) [Term] id: FBbt:00002940 name: abdominal 8 dorsal trichome (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal trichome of larval abdominal segment 8." [FBC:SPR] subset: cur ! cur is_a: FBbt:00002912 ! abdominal dorsal trichome (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002941 name: abdominal 8 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Ventral denticle belt of larval abdominal segment 8." [FBC:SPR] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00002942 name: embryonic/larval abdominal 9 sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval abdominal segment 9 (FBbt:00001756)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval abdominal 9 sensillum" EXACT [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00002943 name: abdominal 9 dorsocaudal sensory organ PSLOh (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dcsc" RELATED [] synonym: "posterior lateral sensory organ" RELATED [] synonym: "sc2/3" RELATED [] synonym: "t2 + t3" RELATED [] is_a: FBbt:00002942 ! embryonic/larval abdominal 9 sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00002944 name: abdominal 9 dorsocaudal sensory organ PSLOp (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dcsc" RELATED [] synonym: "posterior lateral sensory organ" RELATED [] synonym: "sc2/3" RELATED [] synonym: "t2 + t3" RELATED [] is_a: FBbt:00002942 ! embryonic/larval abdominal 9 sensillum (Drosophila) is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00002945 name: abdominal 9 lateral chordotonal organ lch3/1 (Drosophila) namespace: fly_anatomy.ontology def: "Lateral chordotonal organ group located in larval abdominal segment 9 close to the dorsocaudal sensory cone (Campos-Ortega and Hartenstein, 1997). It is composed of a triscolopidial and a monoscolopidial chordotonal organ." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00002946 name: abdominal 9 ventral denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Ventral denticle belt of larval segment 9." [FBC:SPR] subset: cur ! cur is_a: FBbt:00002920 ! abdominal ventral denticle belt (Drosophila) relationship: part_of FBbt:00001756 ! larval abdominal segment 9 (Drosophila) [Term] id: FBbt:00002947 name: embryonic/larval abdominal 10 sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval abdominal segment 10 (FBbt:00001757)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval abdominal 10 sensillum" EXACT [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) relationship: part_of FBbt:00001757 ! larval abdominal segment 10 (Drosophila) [Term] id: FBbt:00002948 name: abdominal 10 caudal sensory organ vas (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002947 ! embryonic/larval abdominal 10 sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00001757 ! larval abdominal segment 10 (Drosophila) [Term] id: FBbt:00002949 name: abdominal 10 caudal sensillum basiconicum ASO (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "SO1" RELATED [] synonym: "anal sensory organ" RELATED [] synonym: "csc" RELATED [] synonym: "sc1" RELATED [] synonym: "t1" RELATED [] synonym: "ventral anal sensillum" RELATED [] is_a: FBbt:00002947 ! embryonic/larval abdominal 10 sensillum (Drosophila) is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) relationship: part_of FBbt:00001757 ! larval abdominal segment 10 (Drosophila) [Term] id: FBbt:00002950 name: embryonic/larval abdominal 11 sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval abdominal segment 11 (FBbt:00001758)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "larval abdominal 11 sensillum" EXACT [] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) relationship: part_of FBbt:00001758 ! larval abdominal segment 11 (Drosophila) [Term] id: FBbt:00002951 name: abdominal 11 anal tuft (Drosophila) namespace: fly_anatomy.ontology def: "Small group of densely packed denticles located at the most ventral point of larval abdominal segment 11, and flanked by the anal sense organs (caudal sense organs)." [FlyBase:FBrf0064788] subset: cur ! cur synonym: "T" RELATED [] synonym: "t0" RELATED [] is_a: FBbt:00002950 ! embryonic/larval abdominal 11 sensillum (Drosophila) is_a: FBbt:00007231 ! external sensillum (Drosophila) relationship: part_of FBbt:00001758 ! larval abdominal segment 11 (Drosophila) [Term] id: FBbt:00002954 name: pupal tracheal system (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal system of the pupa." [FlyBase:FBrf0064787] subset: cur ! cur is_a: UBERON:0005155 ! open tracheal system relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00002955 name: coiled tracheole (Drosophila) namespace: fly_anatomy.ontology def: "Tracheolar cell that develops in the pupa and displays a striking coiled structure." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00005047 ! tracheole (Drosophila) relationship: part_of FBbt:00002954 ! pupal tracheal system (Drosophila) [Term] id: FBbt:00002956 name: pupal trachea (Drosophila) namespace: fly_anatomy.ontology def: "Tracheae of the pupa." [FlyBase:FBrf0064787] subset: cur ! cur is_a: UBERON:0003127 ! open tracheal system trachea relationship: part_of FBbt:00002954 ! pupal tracheal system (Drosophila) [Term] id: FBbt:00002957 name: pupal dorsal trunk (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002958 name: pupal lateral trunk (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002959 name: pupal transverse connective (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002960 name: pupal transverse connective 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002959 ! pupal transverse connective (Drosophila) [Term] id: FBbt:00002961 name: pupal transverse connective 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002959 ! pupal transverse connective (Drosophila) [Term] id: FBbt:00002962 name: pupal transverse connective 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002959 ! pupal transverse connective (Drosophila) [Term] id: FBbt:00002963 name: pupal transverse connective 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002959 ! pupal transverse connective (Drosophila) [Term] id: FBbt:00002964 name: pupal transverse connective 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002959 ! pupal transverse connective (Drosophila) [Term] id: FBbt:00002965 name: pupal cerebropharyngeal branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002966 name: pupal cerebral branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002967 name: pupal cerebral anastomosis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002968 name: pupal pharyngeal branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002969 name: pupal dorsal branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002970 name: pupal dorsal branch 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002969 ! pupal dorsal branch (Drosophila) [Term] id: FBbt:00002971 name: pupal dorsal branch 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002969 ! pupal dorsal branch (Drosophila) [Term] id: FBbt:00002972 name: pupal dorsal branch 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002969 ! pupal dorsal branch (Drosophila) [Term] id: FBbt:00002973 name: pupal dorsal branch 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002969 ! pupal dorsal branch (Drosophila) [Term] id: FBbt:00002974 name: pupal dorsal branch 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002969 ! pupal dorsal branch (Drosophila) [Term] id: FBbt:00002975 name: pupal spiracular branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002976 name: pupal spiracular branch 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002975 ! pupal spiracular branch (Drosophila) [Term] id: FBbt:00002977 name: pupal spiracular branch 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002975 ! pupal spiracular branch (Drosophila) [Term] id: FBbt:00002978 name: pupal spiracular branch 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002975 ! pupal spiracular branch (Drosophila) [Term] id: FBbt:00002979 name: pupal spiracular branch 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002975 ! pupal spiracular branch (Drosophila) [Term] id: FBbt:00002980 name: pupal spiracular branch 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002975 ! pupal spiracular branch (Drosophila) [Term] id: FBbt:00002981 name: pupal abdominal trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002982 name: pupal wing branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002983 name: pupal haltere branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002984 name: pupal leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002985 name: pupal prothoracic leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "leg branch 1" RELATED [] is_a: FBbt:00002984 ! pupal leg trachea (Drosophila) [Term] id: FBbt:00002986 name: pupal mesothoracic leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "leg branch 2" RELATED [] is_a: FBbt:00002984 ! pupal leg trachea (Drosophila) [Term] id: FBbt:00002987 name: pupal metathoracic leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "leg branch 3" RELATED [] is_a: FBbt:00002984 ! pupal leg trachea (Drosophila) [Term] id: FBbt:00002988 name: pupal ganglionic branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002989 name: pupal ganglionic branch 0 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002988 ! pupal ganglionic branch (Drosophila) [Term] id: FBbt:00002990 name: pupal ganglionic branch 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002988 ! pupal ganglionic branch (Drosophila) [Term] id: FBbt:00002991 name: pupal ganglionic branch 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002988 ! pupal ganglionic branch (Drosophila) [Term] id: FBbt:00002992 name: pupal ventral anastomosis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002956 ! pupal trachea (Drosophila) [Term] id: FBbt:00002993 name: pupal ventral anastomosis 0 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002992 ! pupal ventral anastomosis (Drosophila) [Term] id: FBbt:00002994 name: pupal ventral anastomosis 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002992 ! pupal ventral anastomosis (Drosophila) [Term] id: FBbt:00002995 name: pupal ventral anastomosis 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002992 ! pupal ventral anastomosis (Drosophila) [Term] id: FBbt:00002996 name: pupal spiracle (Drosophila) namespace: fly_anatomy.ontology def: "Spiracle of the pupa." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00005054 ! spiracle (Drosophila) relationship: part_of FBbt:00002954 ! pupal tracheal system (Drosophila) [Term] id: FBbt:00002997 name: anterior pupal spiracle (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most spiracle of the pupa." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00002996 ! pupal spiracle (Drosophila) [Term] id: FBbt:00002998 name: non-functional pupal spiracle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002996 ! pupal spiracle (Drosophila) [Term] id: FBbt:00002999 name: non-functional pupal spiracle 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002998 ! non-functional pupal spiracle (Drosophila) [Term] id: FBbt:00003000 name: non-functional pupal spiracle 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002998 ! non-functional pupal spiracle (Drosophila) [Term] id: FBbt:00003001 name: non-functional pupal spiracle 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002998 ! non-functional pupal spiracle (Drosophila) [Term] id: FBbt:00003002 name: non-functional pupal spiracle 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002998 ! non-functional pupal spiracle (Drosophila) [Term] id: FBbt:00003003 name: air bubble (Drosophila) namespace: fly_anatomy.ontology def: "Bubble of gas that appears in the center of the prepupa. It then translocates to the posterior of the animal. Rhythmic contractions of the abdominal muscles, accompanied by a swaying motion of the prepupa, moves the gas bubble along the sides of the animal towards the anterior end, driving larval/pupal apolysis (the separation of cuticle from the epidermis) and creating a space at the anterior of the puparium for subsequent adult head eversion." [FlyBase:FBrf0040740, FlyBase:FBrf0201083] subset: cur ! cur synonym: "prepupal air bubble" RELATED [] is_a: UBERON:0000464 ! anatomical space relationship: part_of FBbt:00002954 ! pupal tracheal system (Drosophila) [Term] id: FBbt:00003005 name: adult tagma (Drosophila) namespace: fly_anatomy.ontology def: "Any tagma (FBbt:00000002) that is part of some adult (FBbt:00003004)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000002 ! tagma (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003006 name: adult segment (Drosophila) namespace: fly_anatomy.ontology def: "Segment of the adult." [FBC:SPR] subset: cur ! cur is_a: UBERON:0000914 ! organismal segment relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003007 name: adult head (Drosophila) namespace: fly_anatomy.ontology def: "Head of the adult organism." [FBC:SPR] subset: cur ! cur is_a: FBbt:00003005 ! adult tagma (Drosophila) is_a: UBERON:0000033 ! head relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003008 name: adult ocular segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adult acron" RELATED [] is_a: FBbt:00000005 ! ocular segment (Drosophila) is_a: FBbt:00003006 ! adult segment (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003009 name: adult head segment (Drosophila) namespace: fly_anatomy.ontology def: "Segment of the adult head." [FlyBase:FBrf0064788] subset: cur ! cur is_a: FBbt:00000006 ! head segment (Drosophila) is_a: FBbt:00003006 ! adult segment (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003010 name: adult procephalic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000007 ! procephalic segment (Drosophila) is_a: FBbt:00003009 ! adult head segment (Drosophila) [Term] id: FBbt:00003011 name: adult labral segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000008 ! labral segment (Drosophila) is_a: FBbt:00003010 ! adult procephalic segment (Drosophila) [Term] id: FBbt:00003012 name: adult antennal segment (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004512 subset: cur ! cur synonym: "adult antennal structure" EXACT [] is_a: FBbt:00000009 ! antennal segment (Drosophila) is_a: FBbt:00003010 ! adult procephalic segment (Drosophila) [Term] id: FBbt:00003013 name: adult intercalary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000010 ! intercalary segment (Drosophila) is_a: FBbt:00003010 ! adult procephalic segment (Drosophila) [Term] id: FBbt:00003014 name: adult gnathal segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000011 ! gnathal segment (Drosophila) is_a: FBbt:00003009 ! adult head segment (Drosophila) [Term] id: FBbt:00003015 name: adult mandibular segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000012 ! mandibular segment (Drosophila) is_a: FBbt:00003014 ! adult gnathal segment (Drosophila) [Term] id: FBbt:00003016 name: adult maxillary segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000013 ! maxillary segment (Drosophila) is_a: FBbt:00003014 ! adult gnathal segment (Drosophila) [Term] id: FBbt:00003017 name: adult labial segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000014 ! labial segment (Drosophila) is_a: FBbt:00003014 ! adult gnathal segment (Drosophila) [Term] id: FBbt:00003018 name: adult thorax (Drosophila) namespace: fly_anatomy.ontology def: "Thorax of the adult." [FlyBase:FBim0000792] subset: cur ! cur is_a: FBbt:00000015 ! thorax (Drosophila) is_a: FBbt:00003005 ! adult tagma (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003019 name: adult thoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000016 ! thoracic segment (Drosophila) is_a: FBbt:00003006 ! adult segment (Drosophila) relationship: part_of FBbt:00003018 ! adult thorax (Drosophila) [Term] id: FBbt:00003020 name: adult prothoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] is_a: FBbt:00000017 ! prothoracic segment (Drosophila) is_a: FBbt:00003019 ! adult thoracic segment (Drosophila) [Term] id: FBbt:00003021 name: adult mesothoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] is_a: FBbt:00000018 ! mesothoracic segment (Drosophila) is_a: FBbt:00003019 ! adult thoracic segment (Drosophila) [Term] id: FBbt:00003022 name: adult metathoracic segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] is_a: FBbt:00000019 ! metathoracic segment (Drosophila) is_a: FBbt:00003019 ! adult thoracic segment (Drosophila) [Term] id: FBbt:00003023 name: adult abdomen (Drosophila) namespace: fly_anatomy.ontology def: "Abdomen of the adult." [FlyBase:FBim0000809, FlyBase:FBim0000810] subset: cur ! cur is_a: FBbt:00000020 ! abdomen (Drosophila) is_a: FBbt:00003005 ! adult tagma (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003024 name: adult abdominal segment (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment (FBbt:00000021) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00000021 ! abdominal segment (Drosophila) is_a: FBbt:00003006 ! adult segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003025 name: adult abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 1 (FBbt:00000022) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a1" RELATED [] is_a: FBbt:00000022 ! abdominal segment 1 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003026 name: adult abdominal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 2 (FBbt:00000023) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a2" RELATED [] is_a: FBbt:00000023 ! abdominal segment 2 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003027 name: adult abdominal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 3 (FBbt:00000024) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a3" RELATED [] is_a: FBbt:00000024 ! abdominal segment 3 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003028 name: adult abdominal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 4 (FBbt:00000025) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a4" RELATED [] is_a: FBbt:00000025 ! abdominal segment 4 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003029 name: adult abdominal segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 5 (FBbt:00000026) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a5" RELATED [] is_a: FBbt:00000026 ! abdominal segment 5 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003030 name: adult abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 6 (FBbt:00000027) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a6" RELATED [] is_a: FBbt:00000027 ! abdominal segment 6 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003031 name: adult abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 7 (FBbt:00000028) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a7" RELATED [] is_a: FBbt:00000028 ! abdominal segment 7 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003032 name: adult abdominal segment 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 8 (FBbt:00000029) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a8" RELATED [] is_a: FBbt:00000029 ! abdominal segment 8 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003033 name: adult abdominal segment 9 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 9 (FBbt:00000030) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a9" RELATED [] is_a: FBbt:00000030 ! abdominal segment 9 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003034 name: adult abdominal segment 10 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 10 (FBbt:00000031) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a10" RELATED [] is_a: FBbt:00000031 ! abdominal segment 10 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003035 name: adult abdominal segment 11 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal segment 11 (FBbt:00000032) that is part of some adult abdomen (FBbt:00003023)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "a11" RELATED [] is_a: FBbt:00000032 ! abdominal segment 11 (Drosophila) is_a: FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003036 name: adult telson (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000033 ! telson (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003037 name: adult tracheal system (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal system of the adult." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBim0000053, FlyBase:FBrf0064787] subset: cur ! cur is_a: UBERON:0005155 ! open tracheal system relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003038 name: adult trachea (Drosophila) namespace: fly_anatomy.ontology def: "Trachea of the adult." [FlyBase:FBrf0064787] subset: cur ! cur is_a: UBERON:0003127 ! open tracheal system trachea relationship: part_of FBbt:00003037 ! adult tracheal system (Drosophila) [Term] id: FBbt:00003039 name: adult dorsal trunk (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003040 name: adult lateral trunk (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003041 name: adult transverse connective (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dorsal segmental trachea" RELATED [] is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003042 name: adult transverse connective 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003043 name: adult transverse connective 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003044 name: adult transverse connective 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003045 name: adult transverse connective 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003046 name: adult transverse connective 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003047 name: adult transverse connective 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003048 name: adult transverse connective 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003049 name: adult transverse connective 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003050 name: adult transverse connective 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003041 ! adult transverse connective (Drosophila) [Term] id: FBbt:00003051 name: dorsal branch (Drosophila) namespace: fly_anatomy.ontology def: "Adult trachea that branches dorsally from the dorsal trunk. It tracheates the dorsal epidermis and dorsal vessel. Each dorsal branch connects to the contralateral branch of the same tracheal metamere via the dorsal anastomosis." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003052 name: prothoracic dorsal branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adult dorsal branch 1" RELATED [] synonym: "prothoracic dorsal commissure" RELATED [] is_a: FBbt:00003051 ! dorsal branch (Drosophila) [Term] id: FBbt:00003053 name: metathoracic dorsal branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adult dorsal branch 2" RELATED [] synonym: "metathoracic dorsal commissure" RELATED [] is_a: FBbt:00003051 ! dorsal branch (Drosophila) [Term] id: FBbt:00003054 name: abdominal dorsal branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "abdominal dorsal commissure" RELATED [] is_a: FBbt:00003051 ! dorsal branch (Drosophila) [Term] id: FBbt:00003055 name: abdominal dorsal branch 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003054 ! abdominal dorsal branch (Drosophila) [Term] id: FBbt:00003056 name: abdominal dorsal branch 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003054 ! abdominal dorsal branch (Drosophila) [Term] id: FBbt:00003057 name: abdominal dorsal branch 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003054 ! abdominal dorsal branch (Drosophila) [Term] id: FBbt:00003058 name: abdominal dorsal branch 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003054 ! abdominal dorsal branch (Drosophila) [Term] id: FBbt:00003059 name: abdominal dorsal branch 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003054 ! abdominal dorsal branch (Drosophila) [Term] id: FBbt:00003060 name: abdominal dorsal branch 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003054 ! abdominal dorsal branch (Drosophila) [Term] id: FBbt:00003061 name: abdominal dorsal branch 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003054 ! abdominal dorsal branch (Drosophila) [Term] id: FBbt:00003062 name: adult ganglionic branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003063 name: adult ganglionic branch 0 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003062 ! adult ganglionic branch (Drosophila) [Term] id: FBbt:00003064 name: adult ganglionic branch 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003062 ! adult ganglionic branch (Drosophila) [Term] id: FBbt:00003065 name: adult ganglionic branch 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003062 ! adult ganglionic branch (Drosophila) [Term] id: FBbt:00003066 name: ventral anastomosis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ventral commissures" RELATED [] is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003067 name: adult ventral anastomosis 0 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003066 ! ventral anastomosis (Drosophila) [Term] id: FBbt:00003068 name: adult ventral anastomosis 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003066 ! ventral anastomosis (Drosophila) [Term] id: FBbt:00003069 name: adult ventral anastomosis 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003066 ! ventral anastomosis (Drosophila) [Term] id: FBbt:00003070 name: visceral branch (Drosophila) namespace: fly_anatomy.ontology def: "Adult trachea that branches from a transverse connective and tracheates the viscera." [FlyBase:FBim0000051, FlyBase:FBrf0064787] subset: cur ! cur synonym: "visceral trachea" RELATED [] is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003071 name: adult spiracular branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003072 name: adult spiracular branch 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003071 ! adult spiracular branch (Drosophila) [Term] id: FBbt:00003073 name: adult spiracular branch 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003071 ! adult spiracular branch (Drosophila) [Term] id: FBbt:00003074 name: adult abdominal spiracular branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "abdominal spiracular trachea" RELATED [] is_a: FBbt:00003071 ! adult spiracular branch (Drosophila) [Term] id: FBbt:00003075 name: adult abdominal spiracular branch 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003074 ! adult abdominal spiracular branch (Drosophila) [Term] id: FBbt:00003076 name: adult abdominal spiracular branch 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003074 ! adult abdominal spiracular branch (Drosophila) [Term] id: FBbt:00003077 name: adult abdominal spiracular branch 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003074 ! adult abdominal spiracular branch (Drosophila) [Term] id: FBbt:00003078 name: adult abdominal spiracular branch 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003074 ! adult abdominal spiracular branch (Drosophila) [Term] id: FBbt:00003079 name: adult abdominal spiracular branch 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003074 ! adult abdominal spiracular branch (Drosophila) [Term] id: FBbt:00003080 name: adult abdominal spiracular branch 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003074 ! adult abdominal spiracular branch (Drosophila) [Term] id: FBbt:00003081 name: adult abdominal spiracular branch 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003074 ! adult abdominal spiracular branch (Drosophila) [Term] id: FBbt:00003082 name: superficial trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003083 name: dorsal superficial trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003082 ! superficial trachea (Drosophila) [Term] id: FBbt:00003084 name: dorsal superficial trachea 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003083 ! dorsal superficial trachea (Drosophila) [Term] id: FBbt:00003085 name: dorsal superficial trachea 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003083 ! dorsal superficial trachea (Drosophila) [Term] id: FBbt:00003086 name: dorsal superficial trachea 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003083 ! dorsal superficial trachea (Drosophila) [Term] id: FBbt:00003087 name: dorsal superficial trachea 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003083 ! dorsal superficial trachea (Drosophila) [Term] id: FBbt:00003088 name: dorsal superficial trachea 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003083 ! dorsal superficial trachea (Drosophila) [Term] id: FBbt:00003089 name: dorsal superficial trachea 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003083 ! dorsal superficial trachea (Drosophila) [Term] id: FBbt:00003090 name: wing branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003091 name: haltere branch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003092 name: leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003093 name: prothoracic leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "leg branch 1" RELATED [] is_a: FBbt:00003092 ! leg trachea (Drosophila) [Term] id: FBbt:00003094 name: mesothoracic leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "leg branch 2" RELATED [] is_a: FBbt:00003092 ! leg trachea (Drosophila) [Term] id: FBbt:00003095 name: metathoracic leg trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "leg branch 3" RELATED [] is_a: FBbt:00003092 ! leg trachea (Drosophila) [Term] id: FBbt:00003096 name: cervical trachea (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - cerebropharyngeal. subset: cur ! cur synonym: "adult cerebral branch" RELATED [] is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003097 name: labial trachea (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - pharyngeal branch. subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003098 name: maxillary palpus trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003099 name: mediosternal trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003100 name: cibarial muscle trachea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003038 ! adult trachea (Drosophila) [Term] id: FBbt:00003101 name: tracheal air sac (Drosophila) namespace: fly_anatomy.ontology def: "Air filled epithelial sac of the adult tracheal system. These highly dilated trachea consist of thin epithelium with very thin chitinous lining, lacking `taenidia` (FBbt:00005045). Consequently they are highly flexible and can collapse or expand with changes in pressure around them." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0003914 ! epithelial tube relationship: part_of FBbt:00003037 ! adult tracheal system (Drosophila) [Term] id: FBbt:00003102 name: frontal head air sac (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal air sac of the adult head, extending ventrally and anteriorly to the brain." [FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007134 ! head air sac (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003103 name: dorsal head air sac (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal air sac located dorsally in the adult head, above the brain." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007134 ! head air sac (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003104 name: antennal air sac (Drosophila) namespace: fly_anatomy.ontology def: "Very small tracheal air sac located in the antenna." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007134 ! head air sac (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003105 name: postgenal air sac (Drosophila) namespace: fly_anatomy.ontology def: "Small tracheal air sac of the adult head, located ventrally and posterior to the eye." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007134 ! head air sac (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003106 name: anteroscutal air sac (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003101 ! tracheal air sac (Drosophila) [Term] id: FBbt:00003107 name: lateroscutal air sac (Drosophila) namespace: fly_anatomy.ontology def: "Lobe of the dorsal air sac in the lateral scutum." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBim0000680, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007133 ! air sac subdivision (Drosophila) relationship: part_of FBbt:00007132 ! dorsal air sac (Drosophila) [Term] id: FBbt:00003108 name: medioscutal air sac (Drosophila) namespace: fly_anatomy.ontology def: "Lobe of the dorsal air sac in the medial scutum." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBim0000680, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007133 ! air sac subdivision (Drosophila) relationship: part_of FBbt:00007132 ! dorsal air sac (Drosophila) [Term] id: FBbt:00003109 name: hypopleural air sac (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00003101 ! tracheal air sac (Drosophila) relationship: part_of FBbt:00003040 ! adult lateral trunk (Drosophila) [Term] id: FBbt:00003110 name: notopleural air sac (Drosophila) namespace: fly_anatomy.ontology def: "Lobe of dorsal air sac underlying the prothoracic episternum (propleurum)." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBim0000680, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007133 ! air sac subdivision (Drosophila) relationship: part_of FBbt:00007132 ! dorsal air sac (Drosophila) [Term] id: FBbt:00003111 name: parenteric air sac (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00003101 ! tracheal air sac (Drosophila) relationship: part_of FBbt:00003039 ! adult dorsal trunk (Drosophila) [Term] id: FBbt:00003112 name: postnotal air sac (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBim0000680, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007133 ! air sac subdivision (Drosophila) relationship: part_of FBbt:00007132 ! dorsal air sac (Drosophila) [Term] id: FBbt:00003113 name: propleural air sac (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00003101 ! tracheal air sac (Drosophila) [Term] id: FBbt:00003114 name: postocular air sac (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal air sac of the adult head, located dorsally and posterior to the eye." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007133 ! air sac subdivision (Drosophila) relationship: part_of FBbt:00003101 ! tracheal air sac (Drosophila) [Term] id: FBbt:00003115 name: pleural air sac (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBim0000680, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007133 ! air sac subdivision (Drosophila) relationship: part_of FBbt:00007132 ! dorsal air sac (Drosophila) [Term] id: FBbt:00003116 name: scutellar air sac (Drosophila) namespace: fly_anatomy.ontology def: "Lobe of the dorsal air sac underlying the scutellum." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBim0000680, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007133 ! air sac subdivision (Drosophila) relationship: part_of FBbt:00007132 ! dorsal air sac (Drosophila) [Term] id: FBbt:00003117 name: sternopleural air sac (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00003101 ! tracheal air sac (Drosophila) [Term] id: FBbt:00003118 name: metathoracic air sac (Drosophila) namespace: fly_anatomy.ontology comment: Existence doubtful. No sign of this in FBrf007735. ds080226. subset: cur ! cur is_a: FBbt:00003101 ! tracheal air sac (Drosophila) [Term] id: FBbt:00003119 name: abdominal air sac (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000051, FlyBase:FBim0000052, FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00003101 ! tracheal air sac (Drosophila) relationship: part_of FBbt:00003039 ! adult dorsal trunk (Drosophila) [Term] id: FBbt:00003120 name: adult spiracle (Drosophila) namespace: fly_anatomy.ontology def: "Spiracle of the adult." [FlyBase:FBrf0064787, ISBN:978-3-11-014898-5] subset: cur ! cur is_a: FBbt:00005054 ! spiracle (Drosophila) relationship: part_of FBbt:00003037 ! adult tracheal system (Drosophila) [Term] id: FBbt:00003121 name: peritreme (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "rim" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003120 ! adult spiracle (Drosophila) [Term] id: FBbt:00003122 name: lever (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003121 ! peritreme (Drosophila) [Term] id: FBbt:00003123 name: pupal/adult digestive system (Drosophila) namespace: fly_anatomy.ontology def: "Digestive system of the pupa or adult." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0001007 ! digestive system relationship: part_of UBERON:0003143 ! pupa relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003124 name: labellar gland (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100317 ! gland (Drosophila) relationship: part_of FBbt:00003123 ! pupal/adult digestive system (Drosophila) [Term] id: FBbt:00003127 name: adult foregut (Drosophila) namespace: fly_anatomy.ontology def: "Anterior region of the alimentary canal, the epithelium of which is lined with a chitinous intima. It consists (from anterior to posterior) of the esophagus, the crop and the stomodeal valve." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0001041 ! foregut relationship: develops_from FBbt:00001836 ! foregut imaginal ring (Drosophila) relationship: part_of FBbt:00007513 ! adult gut (Drosophila) [Term] id: FBbt:00003128 name: adult pharynx (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most portion of the adult foregut, extending from the opening of the labrum to the esophagus. The posterior of the pharynx is the cibarium. The anterior portion is the labral channel, the posterior wall of which is the epipharynx and the anterior wall of which is the hypopharynx. The salivary duct connects to the pharynx just anterior to the cibarium." [FlyBase:FBrf0007733] subset: cur ! cur is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of FBbt:00003127 ! adult foregut (Drosophila) [Term] id: FBbt:00003129 name: adult epipharynx (Drosophila) namespace: fly_anatomy.ontology def: "Posterior wall of the labral channel, the anterior-most portion of the adult foregut." [FlyBase:FBrf0007733] subset: cur ! cur is_a: FBbt:00005750 ! epipharynx (Drosophila) relationship: part_of FBbt:00003128 ! adult pharynx (Drosophila) [Term] id: FBbt:00003130 name: adult hypopharynx (Drosophila) namespace: fly_anatomy.ontology def: "Anterior wall of the labral channel, the anterior-most portion of the adult foregut." [FlyBase:FBrf0007733] comment: Ferris (1950) claims that the hypopharynx does not exist in D.melanogaster, although the salivary stylet is often mistaken for it. It seems likely that the salivary stylet (FBbt:00004547) and the hypopharynx (FBbt:00003130) described by Bodenstein (1950) are the same structure. subset: cur ! cur is_a: UBERON:0003132 ! arthropod hypopharynx relationship: part_of FBbt:00003128 ! adult pharynx (Drosophila) [Term] id: FBbt:00003131 name: adult esophagus (Drosophila) namespace: fly_anatomy.ontology def: "Portion of the adult foregut that extends from the cibarium anteriorly, through the brain to the proventriculus posteriorly." [FlyBase:FBrf0007733] subset: cur ! cur synonym: "adult oesophagus" EXACT [] is_a: UBERON:0001043 ! esophagus relationship: part_of FBbt:00003127 ! adult foregut (Drosophila) [Term] id: FBbt:00003132 name: esophageal valve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "oesophageal valve" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003131 ! adult esophagus (Drosophila) [Term] id: FBbt:00003133 name: crop (Drosophila) namespace: fly_anatomy.ontology def: "Pedunculate sac evaginating from the adult foregut just before it meets the midgut. It is a bi-lobed structure capable of considerable extension, whose function is the storage of ingested liquid food." [FlyBase:FBrf0064792, FlyBase:FBrf0075527] subset: cur ! cur is_a: UBERON:0009854 ! digestive tract diverticulum relationship: part_of FBbt:00003127 ! adult foregut (Drosophila) [Term] id: FBbt:00003134 name: salivary pump (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "salivary valve" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003123 ! pupal/adult digestive system (Drosophila) [Term] id: FBbt:00003135 name: adult salivary gland (Drosophila) namespace: fly_anatomy.ontology def: "Salivary gland of the adult." [FBC:SPR] subset: cur ! cur is_a: UBERON:0001044 ! salivary gland relationship: develops_from FBbt:00001835 ! salivary gland imaginal ring (Drosophila) relationship: part_of FBbt:00003123 ! pupal/adult digestive system (Drosophila) [Term] id: FBbt:00003136 name: adult salivary gland duct (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of FBbt:00003135 ! adult salivary gland (Drosophila) [Term] id: FBbt:00003137 name: adult common salivary gland duct (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of FBbt:00003136 ! adult salivary gland duct (Drosophila) [Term] id: FBbt:00003138 name: adult midgut (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003141 def: "The middle region of the adult alimentary canal, the epithelium of which is lined with peritrophic membrane rather than chitinous intima as for the foregut and hindgut." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "anterior intestine" RELATED [] synonym: "mesenteron" RELATED [] synonym: "stomach" RELATED [] synonym: "ventriculus" EXACT [] is_a: UBERON:0001045 ! midgut relationship: develops_from FBbt:00001837 ! midgut imaginal island (Drosophila) relationship: part_of FBbt:00007513 ! adult gut (Drosophila) [Term] id: FBbt:00003139 name: adult proventriculus (Drosophila) namespace: fly_anatomy.ontology def: "An organ at the junction of the foregut and midgut that has parts derived from both. The outer layer is a saccular modification of the anterior-most part of the midgut wall. This covers the cardial valve (stomodeal valve) formed by the evaginated posterior end of the esophagus." [FlyBase:FBrf0007735] comment: This structure is more correctly referred to as the 'cardia'. Strictly, proventriculus refers to a modification of the foregut just anterior to the stomodeal valve found in many insects. Drosophila has no such foregut modification (Miller, 1950). However, the term 'proventriculus' is the one most commonly used for this structure. subset: cur ! cur synonym: "cardia" EXACT [] is_a: FBbt:00005752 ! proventriculus (Drosophila) relationship: part_of FBbt:00007513 ! adult gut (Drosophila) [Term] id: FBbt:00003140 name: cardial valve (Drosophila) namespace: fly_anatomy.ontology def: "A deep fold in the posterior-most part of the foregut epithelium that forms the inner part of the adult proventriculus (cardia). The space between the two layers of this fold is filled with longitudinal muscle fibers. The stomodeal intima continues over both layers. The cells of the epithelium are cuboidal to columnar and are vacuolate." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "cardiac valve" RELATED [] synonym: "stomodaeal valve" RELATED [] is_a: UBERON:0000483 ! epithelium relationship: part_of FBbt:00003139 ! adult proventriculus (Drosophila) [Term] id: FBbt:00003142 name: peritrophic membrane (Drosophila) namespace: fly_anatomy.ontology def: "Secreted acellular membrane that lines the midgut." [FlyBase:FBrf0075527, PMID:319739] subset: cur ! cur is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001045 ! midgut [Term] id: FBbt:00003143 name: adult hindgut (Drosophila) namespace: fly_anatomy.ontology def: "Hindgut of the adult digestive system." [FlyBase:FBrf0064792, FlyBase:FBrf0075527] subset: cur ! cur synonym: "posterior intestine" RELATED [] is_a: UBERON:0001046 ! hindgut relationship: develops_from FBbt:00001840 ! hindgut imaginal ring (Drosophila) relationship: part_of FBbt:00007513 ! adult gut (Drosophila) [Term] id: FBbt:00003144 name: posterior adult hindgut (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most region of the adult hindgut. It consists of a broadly expanded rectal sac that tapers posteriorly to the narrow rectum proper, terminating at the anus. Protruding from the walls into the lumen of the rectal sac are two pairs of conical rectal papillae." [FlyBase:FBrf0186027] subset: cur ! cur synonym: "adult rectum" RELATED [] synonym: "posterior intestine" RELATED [FlyBase:FBrf0186027] is_a: UBERON:0006866 ! terminal part of digestive tract relationship: part_of FBbt:00003143 ! adult hindgut (Drosophila) [Term] id: FBbt:00003145 name: adult rectal valve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003144 ! posterior adult hindgut (Drosophila) [Term] id: FBbt:00003146 name: adult rectal papilla (Drosophila) namespace: fly_anatomy.ontology def: "Paired papilla projecting from the side wall into the lumen of the rectal sac. Each papillae is a conical thick-walled invagination of the epithelium 100-150um high and 65-85um in diameter basally, containing a narrow central cavity occupied by a bundle of five trachea (Miller, 1950)." [FlyBase:FBrf0186027] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003144 ! posterior adult hindgut (Drosophila) [Term] id: FBbt:00003147 name: adult rectal sphincter (Drosophila) namespace: fly_anatomy.ontology def: "Sphincter muscles located at the narrow posterior end of the rectum." [FlyBase:FBrf0186027] subset: cur ! cur synonym: "adult anal sphincter" RELATED [FlyBase:FBrf0186027] is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003144 ! posterior adult hindgut (Drosophila) [Term] id: FBbt:00003149 name: adult circulatory system (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0007735, FlyBase:FBrf0031012] subset: cur ! cur is_a: UBERON:0001009 ! circulatory system relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003150 name: adult hemocoel (Drosophila) namespace: fly_anatomy.ontology def: "Hemocoel of the adult." [FBC:SPR] subset: cur ! cur synonym: "adult haemocoel" EXACT [] is_a: UBERON:0002323 ! body cavity relationship: part_of FBbt:00003149 ! adult circulatory system (Drosophila) [Term] id: FBbt:00003151 name: adult hemolymph (Drosophila) namespace: fly_anatomy.ontology def: "Hemolymph of the adult circulatory system." [FBC:SPR] subset: cur ! cur synonym: "adult haemolymph" EXACT [] is_a: UBERON:0001011 ! hemolymph relationship: part_of FBbt:00003150 ! adult hemocoel (Drosophila) [Term] id: FBbt:00003152 name: adult dorsal vessel (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal vessel of the adult. It extends from the sixth abdominal segment to the dorsal anterior region of the brain (Curtis et al., 1999). The anterior portion, which is devoid of ostia, is the aorta, whilst the posterior (caudal) region, which has ostia, forms the heart proper." [FlyBase:FBrf0108687] subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of FBbt:00003149 ! adult circulatory system (Drosophila) [Term] id: FBbt:00003153 name: adult aorta (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003152 ! adult dorsal vessel (Drosophila) [Term] id: FBbt:00003155 name: adult aortic funnel (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0007100 ! circulatory organ [Term] id: FBbt:00003156 name: adult heart chamber (Drosophila) namespace: fly_anatomy.ontology def: "Chamber of the adult heart." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "heart chamber" EXACT [] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007100 ! circulatory organ [Term] id: FBbt:00003157 name: adult heart chamber 1 (Drosophila) namespace: fly_anatomy.ontology def: "First, anterior-most chamber of the adult heart. It is funnel-form, widening to 120um anteriorly at its junction with the expanded end of the aorta, and is located in abdominal segments 1 and 2." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "Ht1" RELATED [FlyBase:FBrf0007735] synonym: "chamber 1" RELATED [] is_a: FBbt:00003156 ! adult heart chamber (Drosophila) [Term] id: FBbt:00003158 name: adult heart chamber 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second anterior-most chamber of the adult heart. It is subcylindrical and is located in abdominal segment 3." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "Ht2" RELATED [FlyBase:FBrf0007735] synonym: "chamber 2" RELATED [] is_a: FBbt:00003156 ! adult heart chamber (Drosophila) [Term] id: FBbt:00003159 name: adult heart chamber 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third anterior-most chamber of the adult heart. It is subcylindrical and occupies abdominal segment 4." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "Ht3" RELATED [FlyBase:FBrf0007735] synonym: "chamber 3" RELATED [] is_a: FBbt:00003156 ! adult heart chamber (Drosophila) [Term] id: FBbt:00003160 name: adult heart chamber 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth and posterior-most chamber of the adult heart. It tapers posteriorly through segment 5 to the middle of segment 6. Here the slender posterior portion is abruptly expanded and the closed end is stretched between its points of attachment on the rectum and dorsal wall." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "Ht4" RELATED [FlyBase:FBrf0007735] synonym: "chamber 4" RELATED [] is_a: FBbt:00003156 ! adult heart chamber (Drosophila) [Term] id: FBbt:00003161 name: adult ostia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005385 ! ostia (Drosophila) relationship: part_of UBERON:0007100 ! circulatory organ [Term] id: FBbt:00003162 name: adult ostia 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003161 ! adult ostia (Drosophila) [Term] id: FBbt:00003163 name: adult ostia 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003161 ! adult ostia (Drosophila) [Term] id: FBbt:00003164 name: adult ostia 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003161 ! adult ostia (Drosophila) [Term] id: FBbt:00003165 name: adult ostia 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003161 ! adult ostia (Drosophila) [Term] id: FBbt:00003166 name: ostiolar valve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003161 ! adult ostia (Drosophila) [Term] id: FBbt:00003167 name: ostiolar valve 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003166 ! ostiolar valve (Drosophila) relationship: part_of FBbt:00003162 ! adult ostia 1 (Drosophila) [Term] id: FBbt:00003168 name: ostiolar valve 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003166 ! ostiolar valve (Drosophila) relationship: part_of FBbt:00003163 ! adult ostia 2 (Drosophila) [Term] id: FBbt:00003169 name: ostiolar valve 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003166 ! ostiolar valve (Drosophila) relationship: part_of FBbt:00003164 ! adult ostia 3 (Drosophila) [Term] id: FBbt:00003170 name: ostiolar valve 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003166 ! ostiolar valve (Drosophila) relationship: part_of FBbt:00003165 ! adult ostia 4 (Drosophila) [Term] id: FBbt:00003171 name: dorsal diaphragm (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0007100 ! circulatory organ [Term] id: FBbt:00003172 name: terminal opening (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0007100 ! circulatory organ [Term] id: FBbt:00003173 name: pulsatile organ (Drosophila) namespace: fly_anatomy.ontology def: "Small muscular organ that functions in pumping of the hemocoel." [FlyBase:FBrf0007734] subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of FBbt:00003149 ! adult circulatory system (Drosophila) [Term] id: FBbt:00003174 name: scutellar pulsatile organ (Drosophila) namespace: fly_anatomy.ontology def: "A small band of muscle fibers that spans the angle where the scutellum joins a ridge running down to the base of the wing. It functions in the pumping of hemolymph." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00003173 ! pulsatile organ (Drosophila) [Term] id: FBbt:00003175 name: frontal pulsatile organ (Drosophila) namespace: fly_anatomy.ontology def: "A thin-walled ovoid ampulla about 20 x 10 um in size, located medially against the front wall of the head, directly beneath the ptilinal fold and antennae. The frontal pulsatile organ muscle 16 is inserted on its rear wall." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00003173 ! pulsatile organ (Drosophila) [Term] id: FBbt:00003176 name: tibial pulsatile organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003173 ! pulsatile organ (Drosophila) [Term] id: FBbt:00003177 name: wing pulsatile organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003173 ! pulsatile organ (Drosophila) [Term] id: FBbt:00003178 name: wing pulsatile organ 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003177 ! wing pulsatile organ (Drosophila) [Term] id: FBbt:00003179 name: wing pulsatile organ 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003177 ! wing pulsatile organ (Drosophila) [Term] id: FBbt:00003180 name: wing pulsatile organ 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003177 ! wing pulsatile organ (Drosophila) [Term] id: FBbt:00003181 name: wing pulsatile organ 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003177 ! wing pulsatile organ (Drosophila) [Term] id: FBbt:00003182 name: wing pulsatile organ 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003177 ! wing pulsatile organ (Drosophila) [Term] id: FBbt:00003183 name: adult garland cell (Drosophila) namespace: fly_anatomy.ontology def: "Any garland cell (FBbt:00005059) that is part of some adult (FBbt:00003004)." [FBC:auto_generated_definition] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "nephrocyte" RELATED [] is_a: CL:0000486 ! garland cell relationship: part_of FBbt:00003149 ! adult circulatory system (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003185 name: adult oenocyte (Drosophila) namespace: fly_anatomy.ontology def: "Large, acidophilic cell found in rows under the epidermis of each abdominal segment. Two dorsal rows run from the heart tube to the spiracle, close to the posterior boundary of the segment. A single, or sometimes split, transverse row is found under each sternite." [FlyBase:FBrf0007735] subset: cur ! cur is_a: CL:0000487 ! oenocyte relationship: part_of FBbt:00007317 ! adult oenocyte band (Drosophila) [Term] id: FBbt:00003186 name: dorsal adult oenocyte band (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007317 ! adult oenocyte band (Drosophila) [Term] id: FBbt:00003187 name: dorsal adult oenocyte band 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003186 ! dorsal adult oenocyte band (Drosophila) [Term] id: FBbt:00003188 name: dorsal adult oenocyte band 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003186 ! dorsal adult oenocyte band (Drosophila) [Term] id: FBbt:00003189 name: dorsal adult oenocyte band 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003186 ! dorsal adult oenocyte band (Drosophila) [Term] id: FBbt:00003190 name: dorsal adult oenocyte band 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003186 ! dorsal adult oenocyte band (Drosophila) [Term] id: FBbt:00003191 name: dorsal adult oenocyte band 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003186 ! dorsal adult oenocyte band (Drosophila) [Term] id: FBbt:00003192 name: dorsal adult oenocyte band 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003186 ! dorsal adult oenocyte band (Drosophila) [Term] id: FBbt:00003193 name: dorsal adult oenocyte band 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003186 ! dorsal adult oenocyte band (Drosophila) [Term] id: FBbt:00003194 name: transverse adult oenocyte band (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007317 ! adult oenocyte band (Drosophila) [Term] id: FBbt:00003195 name: transverse adult oenocyte band 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003194 ! transverse adult oenocyte band (Drosophila) [Term] id: FBbt:00003196 name: transverse adult oenocyte band 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003194 ! transverse adult oenocyte band (Drosophila) [Term] id: FBbt:00003197 name: transverse adult oenocyte band 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003194 ! transverse adult oenocyte band (Drosophila) [Term] id: FBbt:00003198 name: transverse adult oenocyte band 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003194 ! transverse adult oenocyte band (Drosophila) [Term] id: FBbt:00003199 name: transverse adult oenocyte band 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003194 ! transverse adult oenocyte band (Drosophila) [Term] id: FBbt:00003200 name: transverse adult oenocyte band 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003194 ! transverse adult oenocyte band (Drosophila) [Term] id: FBbt:00003201 name: transverse adult oenocyte band 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003194 ! transverse adult oenocyte band (Drosophila) [Term] id: FBbt:00003202 name: ventral adult oenocyte band (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007317 ! adult oenocyte band (Drosophila) [Term] id: FBbt:00003203 name: ventral adult oenocyte band 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003202 ! ventral adult oenocyte band (Drosophila) [Term] id: FBbt:00003204 name: ventral adult oenocyte band 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003202 ! ventral adult oenocyte band (Drosophila) [Term] id: FBbt:00003205 name: ventral adult oenocyte band 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003202 ! ventral adult oenocyte band (Drosophila) [Term] id: FBbt:00003206 name: ventral adult oenocyte band 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003202 ! ventral adult oenocyte band (Drosophila) [Term] id: FBbt:00003207 name: ventral adult oenocyte band 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003202 ! ventral adult oenocyte band (Drosophila) [Term] id: FBbt:00003208 name: adult adipose system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005065 ! adipose system (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003209 name: adult fat body (Drosophila) namespace: fly_anatomy.ontology def: "Fat body of the adult." [FlyBase:FBrf0064793] subset: cur ! cur is_a: UBERON:0003917 ! arthropod fat body relationship: part_of FBbt:00003208 ! adult adipose system (Drosophila) [Term] id: FBbt:00003210 name: peripheral adult fat mass (Drosophila) namespace: fly_anatomy.ontology def: "Component part of the adult fat body that is found in sheets beneath the body wall (Bate, 1993)." [FlyBase:FBrf0064793] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003209 ! adult fat body (Drosophila) [Term] id: FBbt:00003211 name: deep adult fat mass (Drosophila) namespace: fly_anatomy.ontology def: "Part of the fat body that is found in the body cavity of the adults, and it derives largely from larval cells surviving through the pupal stage. It degenerate a few days post-eclosion (Bate, 1993)." [FlyBase:FBrf0064793] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003209 ! adult fat body (Drosophila) [Term] id: FBbt:00003212 name: pericardial adult fat mass (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003209 ! adult fat body (Drosophila) [Term] id: FBbt:00003213 name: abdominal adult fat mass (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003209 ! adult fat body (Drosophila) [Term] id: FBbt:00003214 name: adult endocrine system (Drosophila) namespace: fly_anatomy.ontology def: "Endocrine system of the adult." [FBC:SPR] subset: cur ! cur is_a: UBERON:0000949 ! endocrine system relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003215 name: adult corpus allatum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001057 ! corpus allatum relationship: part_of FBbt:00003214 ! adult endocrine system (Drosophila) [Term] id: FBbt:00003216 name: adult corpus cardiacum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001056 ! corpus cardiacum relationship: part_of FBbt:00003214 ! adult endocrine system (Drosophila) [Term] id: FBbt:00003217 name: dorsal neurohemal organ (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired neurosecretory organ of the thoracic segments, formed by the axons of Tv neurons, wrapped around support cells, forming a compact, globular structure that project dorsally above the surface of the central nervous system." [FlyBase:FBrf0190279] subset: cur ! cur synonym: "dorsal median cell" RELATED [] is_a: UBERON:0001053 ! neurohemal organ [Term] id: FBbt:00003218 name: adult muscle system (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0000383 ! musculature of body relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003220 name: adepithelial cell of labial disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some labial disc (FBbt:00001764)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003221 name: adepithelial cell of clypeo-labral disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some clypeo-labral disc (FBbt:00001765)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003222 name: adepithelial cell of eye-antennal disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some eye-antennal disc (FBbt:00001766)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003223 name: adepithelial cell of dorsal prothoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some humeral disc (FBbt:00001777)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003224 name: adepithelial cell of ventral prothoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some prothoracic leg disc (FBbt:00001781)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003225 name: adepithelial cell of dorsal mesothoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some wing disc (FBbt:00001778)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003226 name: adepithelial cell of ventral mesothoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some mesothoracic leg disc (FBbt:00001782)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003227 name: adepithelial cell of dorsal metathoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some haltere disc (FBbt:00001779)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003228 name: adepithelial cell of ventral metathoracic disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell (FBbt:00003219) that connected to some metathoracic leg disc (FBbt:00001783)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003229 name: adepithelial cell of genital disc (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000462 ! adepithelial cell [Term] id: FBbt:00003230 name: adepithelial cell of female genital disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell of genital disc (FBbt:00003229) that connected to some female genital disc (FBbt:00001787)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00003229 ! adepithelial cell of genital disc (Drosophila) [Term] id: FBbt:00003231 name: adepithelial cell of male genital disc (Drosophila) namespace: fly_anatomy.ontology def: "Any adepithelial cell of genital disc (FBbt:00003229) that connected to some male genital disc (FBbt:00001785)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00003229 ! adepithelial cell of genital disc (Drosophila) [Term] id: FBbt:00003232 name: adult myoblast (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0053819] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "AMP" RELATED [] synonym: "P1 AdMus" RELATED [FBC:ds555] synonym: "adult muscle precursor" RELATED [] is_a: CL:0000056 ! myoblast relationship: develops_from FBbt:00005516 ! adult muscle precursor primordium (Drosophila) relationship: part_of FBbt:00003218 ! adult muscle system (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00003233 name: adult thoracic myoblast (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003232 ! adult myoblast (Drosophila) relationship: part_of FBbt:00003018 ! adult thorax (Drosophila) relationship: part_of FBbt:00005390 ! pupal thorax (Drosophila) [Term] id: FBbt:00003234 name: adult abdominal myoblast (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003232 ! adult myoblast (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) relationship: part_of FBbt:00005391 ! pupal abdomen (Drosophila) [Term] id: FBbt:00003235 name: dorsal adult muscle precursor cluster abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003234 ! adult abdominal myoblast (Drosophila) [Term] id: FBbt:00003236 name: dorsal adult muscle precursor cluster abdominal 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003235 ! dorsal adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000022 ! abdominal segment 1 (Drosophila) [Term] id: FBbt:00003237 name: dorsal adult muscle precursor cluster abdominal 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003235 ! dorsal adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) [Term] id: FBbt:00003238 name: dorsal adult muscle precursor cluster abdominal 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003235 ! dorsal adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000024 ! abdominal segment 3 (Drosophila) [Term] id: FBbt:00003239 name: dorsal adult muscle precursor cluster abdominal 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003235 ! dorsal adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000025 ! abdominal segment 4 (Drosophila) [Term] id: FBbt:00003240 name: dorsal adult muscle precursor cluster abdominal 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003235 ! dorsal adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000026 ! abdominal segment 5 (Drosophila) [Term] id: FBbt:00003241 name: dorsal adult muscle precursor cluster abdominal 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003235 ! dorsal adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000027 ! abdominal segment 6 (Drosophila) [Term] id: FBbt:00003242 name: dorsal adult muscle precursor cluster abdominal 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003235 ! dorsal adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000028 ! abdominal segment 7 (Drosophila) [Term] id: FBbt:00003243 name: lateral adult muscle precursor cluster abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003234 ! adult abdominal myoblast (Drosophila) [Term] id: FBbt:00003244 name: lateral adult muscle precursor cluster abdominal 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003243 ! lateral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000022 ! abdominal segment 1 (Drosophila) [Term] id: FBbt:00003245 name: lateral adult muscle precursor cluster abdominal 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003243 ! lateral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) [Term] id: FBbt:00003246 name: lateral adult muscle precursor cluster abdominal 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003243 ! lateral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000024 ! abdominal segment 3 (Drosophila) [Term] id: FBbt:00003247 name: lateral adult muscle precursor cluster abdominal 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003243 ! lateral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000025 ! abdominal segment 4 (Drosophila) [Term] id: FBbt:00003248 name: lateral adult muscle precursor cluster abdominal 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003243 ! lateral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000026 ! abdominal segment 5 (Drosophila) [Term] id: FBbt:00003249 name: lateral adult muscle precursor cluster abdominal 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003243 ! lateral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000027 ! abdominal segment 6 (Drosophila) [Term] id: FBbt:00003250 name: lateral adult muscle precursor cluster abdominal 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003243 ! lateral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000028 ! abdominal segment 7 (Drosophila) [Term] id: FBbt:00003251 name: ventral adult muscle precursor cluster abdominal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003234 ! adult abdominal myoblast (Drosophila) [Term] id: FBbt:00003252 name: ventral adult muscle precursor cluster abdominal 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003251 ! ventral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000022 ! abdominal segment 1 (Drosophila) [Term] id: FBbt:00003253 name: ventral adult muscle precursor cluster abdominal 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003251 ! ventral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) [Term] id: FBbt:00003254 name: ventral adult muscle precursor cluster abdominal 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003251 ! ventral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000024 ! abdominal segment 3 (Drosophila) [Term] id: FBbt:00003255 name: ventral adult muscle precursor cluster abdominal 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003251 ! ventral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000025 ! abdominal segment 4 (Drosophila) [Term] id: FBbt:00003256 name: ventral adult muscle precursor cluster abdominal 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003251 ! ventral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000026 ! abdominal segment 5 (Drosophila) [Term] id: FBbt:00003257 name: ventral adult muscle precursor cluster abdominal 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003251 ! ventral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000027 ! abdominal segment 6 (Drosophila) [Term] id: FBbt:00003258 name: ventral adult muscle precursor cluster abdominal 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003251 ! ventral adult muscle precursor cluster abdominal (Drosophila) relationship: part_of FBbt:00000028 ! abdominal segment 7 (Drosophila) [Term] id: FBbt:00003259 name: adult somatic muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005090 ! muscle structure relationship: part_of FBbt:00003218 ! adult muscle system (Drosophila) [Term] id: FBbt:00003260 name: skeletal muscle of head (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003259 ! adult somatic muscle (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003261 name: proboscis muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00004520 ! mouthpart (Drosophila) [Term] id: FBbt:00003262 name: proboscis muscle 1 (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - rostral protractors. subset: cur ! cur synonym: "lateral labial adductor muscle" RELATED [] synonym: "retractors of rostrum" RELATED [] is_a: FBbt:00003261 ! proboscis muscle (Drosophila) [Term] id: FBbt:00003263 name: proboscis muscle 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "accessory retractors of rostrum" RELATED [] synonym: "maxillary retractor muscle" RELATED [] is_a: FBbt:00003261 ! proboscis muscle (Drosophila) [Term] id: FBbt:00003264 name: proboscis muscle 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "flexors of labrum" RELATED [] is_a: FBbt:00003261 ! proboscis muscle (Drosophila) [Term] id: FBbt:00003265 name: maxillary muscle 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adductor of apodeme" RELATED [] is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00003016 ! adult maxillary segment (Drosophila) [Term] id: FBbt:00003266 name: labral muscle 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dilators of labrum-epipharynx" RELATED [] synonym: "labral compressor muscle" RELATED [] is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of UBERON:0005905 ! insect labrum [Term] id: FBbt:00003267 name: haustellum muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00004541 ! mediproboscis (Drosophila) [Term] id: FBbt:00003268 name: haustellum muscle 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "palpal muscle" RELATED [] synonym: "retractors of paraphyses" RELATED [] is_a: FBbt:00003267 ! haustellum muscle (Drosophila) [Term] id: FBbt:00003269 name: haustellum muscle 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "palpal muscle retractors of furca" RELATED [] is_a: FBbt:00003267 ! haustellum muscle (Drosophila) [Term] id: FBbt:00003270 name: haustellum muscle 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "transverse labial muscle" RELATED [] synonym: "transverse of haustellum" RELATED [] is_a: FBbt:00003267 ! haustellum muscle (Drosophila) [Term] id: FBbt:00003271 name: cibarial muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00003272 name: cibarial muscle 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lateral pharyngeal muscle" RELATED [] synonym: "retractors of fulcrum" RELATED [] is_a: FBbt:00003271 ! cibarial muscle (Drosophila) [Term] id: FBbt:00003273 name: cibarial muscle 10 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "medial pharyngeal muscle" RELATED [] is_a: FBbt:00003271 ! cibarial muscle (Drosophila) [Term] id: FBbt:00003274 name: cibarial dilator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00003275 name: cibarial dilator muscle 11 (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - dilator of pharynx. subset: cur ! cur synonym: "pharyngeal muscle" RELATED [] is_a: FBbt:00003274 ! cibarial dilator muscle (Drosophila) [Term] id: FBbt:00003276 name: cibarial dilator muscle 12 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cibarial muscle" RELATED [] is_a: FBbt:00003274 ! cibarial dilator muscle (Drosophila) [Term] id: FBbt:00003277 name: salivary pump muscle 13 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dorsal salivary muscle" RELATED [] synonym: "gracilis" RELATED [] is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00003135 ! adult salivary gland (Drosophila) [Term] id: FBbt:00003278 name: second antennal segment muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00004514 ! second segment of antenna (Drosophila) [Term] id: FBbt:00003279 name: second antennal segment muscle 14 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003278 ! second antennal segment muscle (Drosophila) [Term] id: FBbt:00003280 name: second antennal segment muscle 15 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003278 ! second antennal segment muscle (Drosophila) [Term] id: FBbt:00003281 name: frontal pulsatile organ muscle 16 (Drosophila) namespace: fly_anatomy.ontology def: "Muscle that attaches anteriorly to the rear wall of the frontal pulsatile organ and posteriorly to the aorta." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) [Term] id: FBbt:00003282 name: skeletal muscle of dorsal head (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0007310, FlyBase:FBrf0056570] subset: cur ! cur is_a: FBbt:00003260 ! skeletal muscle of head (Drosophila) relationship: part_of FBbt:00004483 ! ptilinum (Drosophila) [Term] id: FBbt:00003283 name: muscle 17 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003284 name: muscle 18a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ptilinal-esophageal muscle" RELATED [] synonym: "ptilinal-pharyngeal" RELATED [] is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003285 name: muscle 18b (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "transverse ptilinal muscle" RELATED [] is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003286 name: muscle 19a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "fronto-tentorial muscle" RELATED [] is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003287 name: muscle 19b (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - geno-tentorial muscle. subset: cur ! cur is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003288 name: transverse vertex muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003289 name: ptilino-tentorial muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003290 name: lunula muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003291 name: ocular-antennal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "retractor of antenna muscle" RELATED [] is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00003292 name: fronto-pharyngeal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "retractor of vertex muscle" RELATED [] is_a: FBbt:00003282 ! skeletal muscle of dorsal head (Drosophila) [Term] id: FBbt:00003293 name: skeletal muscle of neck (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cervical muscle" RELATED [] is_a: FBbt:00003259 ! adult somatic muscle (Drosophila) relationship: part_of FBbt:00004550 ! neck (Drosophila) [Term] id: FBbt:00003294 name: dorsal cervical muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003293 ! skeletal muscle of neck (Drosophila) [Term] id: FBbt:00003295 name: dorsal cervical muscle 20 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003294 ! dorsal cervical muscle (Drosophila) [Term] id: FBbt:00003296 name: dorsal cervical muscle 21 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003294 ! dorsal cervical muscle (Drosophila) [Term] id: FBbt:00003297 name: dorsal cervical muscle 22 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003294 ! dorsal cervical muscle (Drosophila) [Term] id: FBbt:00003298 name: dorsal cervical muscle 23 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003294 ! dorsal cervical muscle (Drosophila) [Term] id: FBbt:00003299 name: lateral cervical muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003293 ! skeletal muscle of neck (Drosophila) [Term] id: FBbt:00003300 name: lateral cervical muscle 24 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003299 ! lateral cervical muscle (Drosophila) [Term] id: FBbt:00003301 name: ventral cervical muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003293 ! skeletal muscle of neck (Drosophila) [Term] id: FBbt:00003302 name: ventral cervical muscle 25 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003301 ! ventral cervical muscle (Drosophila) [Term] id: FBbt:00003303 name: ventral cervical muscle 26 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003301 ! ventral cervical muscle (Drosophila) [Term] id: FBbt:00003304 name: ventral cervical muscle 27 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003301 ! ventral cervical muscle (Drosophila) [Term] id: FBbt:00003305 name: skeletal muscle of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003259 ! adult somatic muscle (Drosophila) [Term] id: FBbt:00003306 name: promotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003305 ! skeletal muscle of thorax (Drosophila) [Term] id: FBbt:00003307 name: tergopleural promotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003306 ! promotor muscle (Drosophila) [Term] id: FBbt:00003308 name: sternal promotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003306 ! promotor muscle (Drosophila) [Term] id: FBbt:00003309 name: pleural promotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003306 ! promotor muscle (Drosophila) [Term] id: FBbt:00003310 name: remotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003305 ! skeletal muscle of thorax (Drosophila) [Term] id: FBbt:00003311 name: tergal remotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003310 ! remotor muscle (Drosophila) [Term] id: FBbt:00003312 name: sternal remotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003310 ! remotor muscle (Drosophila) [Term] id: FBbt:00003313 name: pleural remotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003310 ! remotor muscle (Drosophila) [Term] id: FBbt:00003314 name: rotator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003305 ! skeletal muscle of thorax (Drosophila) [Term] id: FBbt:00003315 name: anterior rotator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003314 ! rotator muscle (Drosophila) [Term] id: FBbt:00003316 name: posterior rotator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003314 ! rotator muscle (Drosophila) [Term] id: FBbt:00003318 name: skeletal muscle of leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003305 ! skeletal muscle of thorax (Drosophila) [Term] id: FBbt:00003319 name: depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003318 ! skeletal muscle of leg (Drosophila) [Term] id: FBbt:00003320 name: extracoxal depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003319 ! depressor muscle (Drosophila) [Term] id: FBbt:00003321 name: intracoxal depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003319 ! depressor muscle (Drosophila) [Term] id: FBbt:00003322 name: tibial depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003319 ! depressor muscle (Drosophila) [Term] id: FBbt:00003323 name: tarsal depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003319 ! depressor muscle (Drosophila) [Term] id: FBbt:00003324 name: pretarsal depressor muscle (Drosophila) namespace: fly_anatomy.ontology def: "Muscle attached via a long tendon to the unguitractor plate of the pretarsus." [FlyBase:FBrf0007734, ISBN:978-0-8014-8125-3] subset: cur ! cur synonym: "retractor of the claws" RELATED [ISBN:978-0-8014-8125-3] is_a: FBbt:00003319 ! depressor muscle (Drosophila) [Term] id: FBbt:00003325 name: levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003318 ! skeletal muscle of leg (Drosophila) [Term] id: FBbt:00003326 name: intracoxal levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) [Term] id: FBbt:00003327 name: intracoxal lateral levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003326 ! intracoxal levator muscle (Drosophila) [Term] id: FBbt:00003328 name: intracoxal mesal levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003326 ! intracoxal levator muscle (Drosophila) [Term] id: FBbt:00003329 name: tibial levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) [Term] id: FBbt:00003330 name: tarsal levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) [Term] id: FBbt:00003331 name: reductor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003318 ! skeletal muscle of leg (Drosophila) [Term] id: FBbt:00003332 name: femoral reductor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003331 ! reductor muscle (Drosophila) [Term] id: FBbt:00003333 name: occlusor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003318 ! skeletal muscle of leg (Drosophila) [Term] id: FBbt:00003334 name: skeletal muscle of prothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003305 ! skeletal muscle of thorax (Drosophila) relationship: part_of FBbt:00003020 ! adult prothoracic segment (Drosophila) [Term] id: FBbt:00003335 name: prothoracic promotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003306 ! promotor muscle (Drosophila) is_a: FBbt:00003334 ! skeletal muscle of prothorax (Drosophila) [Term] id: FBbt:00003336 name: prothoracic tergopleural promotor muscle 28 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003307 ! tergopleural promotor muscle (Drosophila) is_a: FBbt:00003335 ! prothoracic promotor muscle (Drosophila) [Term] id: FBbt:00003337 name: prothoracic pleural promotor and abductor muscle 29 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003309 ! pleural promotor muscle (Drosophila) is_a: FBbt:00003335 ! prothoracic promotor muscle (Drosophila) [Term] id: FBbt:00003338 name: prothoracic pleural promotor muscle 30 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003309 ! pleural promotor muscle (Drosophila) is_a: FBbt:00003335 ! prothoracic promotor muscle (Drosophila) [Term] id: FBbt:00003339 name: prothoracic sternal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003334 ! skeletal muscle of prothorax (Drosophila) [Term] id: FBbt:00003340 name: prothoracic sternal anterior rotator muscle 31 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003315 ! anterior rotator muscle (Drosophila) is_a: FBbt:00003339 ! prothoracic sternal muscle (Drosophila) [Term] id: FBbt:00003341 name: prothoracic sternal posterior rotator muscle 32 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003316 ! posterior rotator muscle (Drosophila) is_a: FBbt:00003339 ! prothoracic sternal muscle (Drosophila) [Term] id: FBbt:00003342 name: prothoracic sternal adductor muscle 33 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003339 ! prothoracic sternal muscle (Drosophila) is_a: UBERON:0000952 ! adductor muscle [Term] id: FBbt:00003343 name: skeletal muscle of prothoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003334 ! skeletal muscle of prothorax (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00003344 name: prothoracic depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003319 ! depressor muscle (Drosophila) is_a: FBbt:00003343 ! skeletal muscle of prothoracic leg (Drosophila) [Term] id: FBbt:00003345 name: prothoracic extracoxal depressor muscle 34 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003320 ! extracoxal depressor muscle (Drosophila) is_a: FBbt:00003344 ! prothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003346 name: prothoracic intracoxal depressor muscle 35 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003321 ! intracoxal depressor muscle (Drosophila) is_a: FBbt:00003344 ! prothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003347 name: prothoracic tibial depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003322 ! tibial depressor muscle (Drosophila) is_a: FBbt:00003344 ! prothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003348 name: prothoracic tibial depressor muscle 40 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003347 ! prothoracic tibial depressor muscle (Drosophila) [Term] id: FBbt:00003349 name: prothoracic tibial depressor muscle 41 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003347 ! prothoracic tibial depressor muscle (Drosophila) [Term] id: FBbt:00003350 name: prothoracic tarsal depressor muscle 43 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003323 ! tarsal depressor muscle (Drosophila) is_a: FBbt:00003344 ! prothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003351 name: prothoracic pretarsal depressor muscle 44 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003324 ! pretarsal depressor muscle (Drosophila) is_a: FBbt:00003344 ! prothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003352 name: prothoracic levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) is_a: FBbt:00003343 ! skeletal muscle of prothoracic leg (Drosophila) [Term] id: FBbt:00003353 name: prothoracic intracoxal lateral levator muscle 36 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003327 ! intracoxal lateral levator muscle (Drosophila) is_a: FBbt:00003352 ! prothoracic levator muscle (Drosophila) [Term] id: FBbt:00003354 name: prothoracic intracoxal mesal levator muscle 37 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003328 ! intracoxal mesal levator muscle (Drosophila) is_a: FBbt:00003352 ! prothoracic levator muscle (Drosophila) [Term] id: FBbt:00003355 name: prothoracic tibial levator muscle 39 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003329 ! tibial levator muscle (Drosophila) is_a: FBbt:00003352 ! prothoracic levator muscle (Drosophila) [Term] id: FBbt:00003356 name: prothoracic tarsal levator muscle 42 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003330 ! tarsal levator muscle (Drosophila) is_a: FBbt:00003352 ! prothoracic levator muscle (Drosophila) [Term] id: FBbt:00003357 name: prothoracic reductor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003331 ! reductor muscle (Drosophila) is_a: FBbt:00003343 ! skeletal muscle of prothoracic leg (Drosophila) [Term] id: FBbt:00003358 name: prothoracic femoral reductor muscle 38 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003332 ! femoral reductor muscle (Drosophila) is_a: FBbt:00003357 ! prothoracic reductor muscle (Drosophila) [Term] id: FBbt:00003359 name: skeletal muscle of mesothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003305 ! skeletal muscle of thorax (Drosophila) relationship: part_of FBbt:00003021 ! adult mesothoracic segment (Drosophila) [Term] id: FBbt:00003360 name: flight muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003361 name: indirect flight muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "IFM" EXACT [] synonym: "fibrillar muscle" RELATED [] is_a: FBbt:00003360 ! flight muscle (Drosophila) [Term] id: FBbt:00003362 name: dorsal medial muscle (Drosophila) namespace: fly_anatomy.ontology def: "An indirect flight muscle that functions as a wing depressor." [FlyBase:FBrf0064793] subset: cur ! cur synonym: "DLM" EXACT [] synonym: "dorsal longitudinal muscle" EXACT [] synonym: "dorso-longitudinal muscle" EXACT [] is_a: FBbt:00003361 ! indirect flight muscle (Drosophila) [Term] id: FBbt:00003363 name: dorsal medial muscle 45a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DLM" RELATED [] synonym: "dorso-longitudinal muscle" RELATED [] is_a: FBbt:00003362 ! dorsal medial muscle (Drosophila) [Term] id: FBbt:00003364 name: dorsal medial muscle 45b (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DLM" RELATED [] synonym: "dorso-longitudinal muscle" RELATED [] is_a: FBbt:00003362 ! dorsal medial muscle (Drosophila) [Term] id: FBbt:00003365 name: dorsal medial muscle 45c (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DLM" RELATED [] synonym: "dorso-longitudinal muscle" RELATED [] is_a: FBbt:00003362 ! dorsal medial muscle (Drosophila) [Term] id: FBbt:00003366 name: dorsal medial muscle 45d (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DLM" RELATED [] synonym: "dorso-longitudinal muscle" RELATED [] is_a: FBbt:00003362 ! dorsal medial muscle (Drosophila) [Term] id: FBbt:00003367 name: dorsal medial muscle 45e (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DLM" RELATED [] synonym: "dorso-longitudinal muscle" RELATED [] is_a: FBbt:00003362 ! dorsal medial muscle (Drosophila) [Term] id: FBbt:00003368 name: dorsal medial muscle 45f (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DLM" RELATED [] synonym: "dorso-longitudinal muscle" RELATED [] is_a: FBbt:00003362 ! dorsal medial muscle (Drosophila) [Term] id: FBbt:00003369 name: lateral oblique dorsal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM III" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003361 ! indirect flight muscle (Drosophila) [Term] id: FBbt:00003370 name: lateral oblique dorsal muscle 46a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM III" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003369 ! lateral oblique dorsal muscle (Drosophila) [Term] id: FBbt:00003371 name: lateral oblique dorsal muscle 46b (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM III" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003369 ! lateral oblique dorsal muscle (Drosophila) [Term] id: FBbt:00003372 name: tergosternal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM I" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003361 ! indirect flight muscle (Drosophila) [Term] id: FBbt:00003373 name: tergosternal muscle 47a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM I" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003372 ! tergosternal muscle (Drosophila) [Term] id: FBbt:00003374 name: tergosternal muscle 47b (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM I" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003372 ! tergosternal muscle (Drosophila) [Term] id: FBbt:00003375 name: tergosternal muscle 47c (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM I" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003372 ! tergosternal muscle (Drosophila) [Term] id: FBbt:00003376 name: coxal tergal remotor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM II" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003311 ! tergal remotor muscle (Drosophila) is_a: FBbt:00003361 ! indirect flight muscle (Drosophila) [Term] id: FBbt:00003377 name: coxal tergal remotor muscle 48a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM II" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003376 ! coxal tergal remotor muscle (Drosophila) [Term] id: FBbt:00003378 name: coxal tergal remotor muscle 48b (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "DVM II" RELATED [] synonym: "dorso-ventral muscle" RELATED [] synonym: "dorsoventral muscle" RELATED [] is_a: FBbt:00003376 ! coxal tergal remotor muscle (Drosophila) [Term] id: FBbt:00003379 name: direct flight muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "direct wing muscle" RELATED [] is_a: FBbt:00003360 ! flight muscle (Drosophila) [Term] id: FBbt:00003380 name: direct flight muscle 49 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003379 ! direct flight muscle (Drosophila) [Term] id: FBbt:00003381 name: direct flight muscle 50 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b1" RELATED [] synonym: "first basalar" RELATED [] synonym: "m.ab. 1" RELATED [] synonym: "muscle of prealar apophysis" RELATED [] synonym: "pa4" RELATED [] synonym: "second basalar muscle" RELATED [] is_a: FBbt:00003379 ! direct flight muscle (Drosophila) [Term] id: FBbt:00003382 name: direct flight muscle 58a (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003379 ! direct flight muscle (Drosophila) [Term] id: FBbt:00003383 name: direct flight muscle 58b (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003379 ! direct flight muscle (Drosophila) [Term] id: FBbt:00003384 name: basalar muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003379 ! direct flight muscle (Drosophila) [Term] id: FBbt:00003385 name: basalar muscle 51 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b2" RELATED [] synonym: "m.ab. 2" RELATED [] synonym: "pa3" RELATED [] synonym: "second basalar" RELATED [] synonym: "sternobasalar muscle" RELATED [] is_a: FBbt:00003384 ! basalar muscle (Drosophila) [Term] id: FBbt:00003386 name: basalar muscle 52 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "3rd & 4th basalar muscle" RELATED [] synonym: "m.an." RELATED [] synonym: "pa6" RELATED [] synonym: "tergopleural" RELATED [] synonym: "tp" RELATED [] is_a: FBbt:00003384 ! basalar muscle (Drosophila) [Term] id: FBbt:00003387 name: axillary muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003379 ! direct flight muscle (Drosophila) [Term] id: FBbt:00003388 name: muscle of first axillary 53 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "anterior muscle of first axillary sclerite" RELATED [] synonym: "first pterale I, I1" RELATED [] synonym: "m.le.1" RELATED [] synonym: "pa3" RELATED [] is_a: FBbt:00003387 ! axillary muscle (Drosophila) [Term] id: FBbt:00003389 name: muscle of third axillary 54 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "anterior muscle of 3rd axillary sclerite" RELATED [] synonym: "first pterale III, III1" RELATED [] synonym: "m.le.2" RELATED [] synonym: "pa2" RELATED [] is_a: FBbt:00003387 ! axillary muscle (Drosophila) [Term] id: FBbt:00003390 name: muscle of third axillary 55 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "third pterale III, III3" RELATED [] is_a: FBbt:00003387 ! axillary muscle (Drosophila) [Term] id: FBbt:00003391 name: muscle of first axillary 56 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003387 ! axillary muscle (Drosophila) [Term] id: FBbt:00003392 name: subalar muscle 57 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003379 ! direct flight muscle (Drosophila) [Term] id: FBbt:00003393 name: mesothoracic pleurosternal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003394 name: mesothoracic pleurosternal muscle 59 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003393 ! mesothoracic pleurosternal muscle (Drosophila) [Term] id: FBbt:00003395 name: mesothoracic pleurosternal muscle 60 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003393 ! mesothoracic pleurosternal muscle (Drosophila) [Term] id: FBbt:00003396 name: mesothoracic lateral intrasegmental muscle 61 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003397 name: mesothoracic ventral longitudinal muscle 62 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003398 name: mesothoracic pleural remotor muscle 63 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003313 ! pleural remotor muscle (Drosophila) is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003399 name: mesothoracic sternal remotor muscle 65 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003312 ! sternal remotor muscle (Drosophila) is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003400 name: mesothoracic sternal promotor muscle 64 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003308 ! sternal promotor muscle (Drosophila) is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003401 name: mesothoracic spiracle occlusor muscle 76 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003333 ! occlusor muscle (Drosophila) is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) [Term] id: FBbt:00003402 name: skeletal muscle of mesothoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003359 ! skeletal muscle of mesothorax (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00003403 name: mesothoracic depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003319 ! depressor muscle (Drosophila) is_a: FBbt:00003402 ! skeletal muscle of mesothoracic leg (Drosophila) [Term] id: FBbt:00003404 name: mesothoracic extracoxal depressor muscle 66 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "TDT" RELATED [] synonym: "jump muscle" RELATED [] synonym: "tergal depressor of trochanter" RELATED [] synonym: "tergotrochanteral muscle" RELATED [] is_a: FBbt:00003320 ! extracoxal depressor muscle (Drosophila) is_a: FBbt:00003403 ! mesothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003405 name: mesothoracic intracoxal depressor muscle 67 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003321 ! intracoxal depressor muscle (Drosophila) is_a: FBbt:00003403 ! mesothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003406 name: mesothoracic tibial depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003322 ! tibial depressor muscle (Drosophila) is_a: FBbt:00003403 ! mesothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003407 name: mesothoracic tibial depressor muscle 71 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003406 ! mesothoracic tibial depressor muscle (Drosophila) [Term] id: FBbt:00003408 name: mesothoracic tibial depressor muscle 72 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003406 ! mesothoracic tibial depressor muscle (Drosophila) [Term] id: FBbt:00003409 name: mesothoracic tarsal depressor muscle 74 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003323 ! tarsal depressor muscle (Drosophila) is_a: FBbt:00003403 ! mesothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003410 name: mesothoracic pretarsal depressor muscle 75 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003324 ! pretarsal depressor muscle (Drosophila) is_a: FBbt:00003403 ! mesothoracic depressor muscle (Drosophila) [Term] id: FBbt:00003411 name: mesothoracic levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) is_a: FBbt:00003402 ! skeletal muscle of mesothoracic leg (Drosophila) [Term] id: FBbt:00003412 name: mesothoracic intracoxal levator muscle 68 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003326 ! intracoxal levator muscle (Drosophila) is_a: FBbt:00003411 ! mesothoracic levator muscle (Drosophila) [Term] id: FBbt:00003413 name: mesothoracic tibial levator muscle 70 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003329 ! tibial levator muscle (Drosophila) is_a: FBbt:00003411 ! mesothoracic levator muscle (Drosophila) [Term] id: FBbt:00003414 name: mesothoracic tarsal levator muscle 73 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003330 ! tarsal levator muscle (Drosophila) is_a: FBbt:00003411 ! mesothoracic levator muscle (Drosophila) [Term] id: FBbt:00003415 name: mesothoracic reductor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) is_a: FBbt:00003402 ! skeletal muscle of mesothoracic leg (Drosophila) [Term] id: FBbt:00003416 name: mesothoracic femoral reductor muscle 69 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003332 ! femoral reductor muscle (Drosophila) is_a: FBbt:00003415 ! mesothoracic reductor muscle (Drosophila) [Term] id: FBbt:00003417 name: skeletal muscle of metathorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003305 ! skeletal muscle of thorax (Drosophila) relationship: part_of FBbt:00003022 ! adult metathoracic segment (Drosophila) [Term] id: FBbt:00003418 name: haltere muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) relationship: part_of UBERON:0000987 ! haltere [Term] id: FBbt:00003419 name: haltere muscle 77 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003418 ! haltere muscle (Drosophila) [Term] id: FBbt:00003420 name: haltere muscle 78 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003418 ! haltere muscle (Drosophila) [Term] id: FBbt:00003421 name: haltere muscle 78a (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0037610] subset: cur ! cur is_a: FBbt:00003418 ! haltere muscle (Drosophila) [Term] id: FBbt:00003422 name: metathoracic pleurosternal muscle 79 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003423 name: metathoracic lateral intersegmental muscle 80 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003424 name: metathoracic ventral longitudinal muscle 81 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003425 name: metathoracic pleural promotor muscle 82 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003309 ! pleural promotor muscle (Drosophila) is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003426 name: metathoracic sternal promotor muscle 84 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003308 ! sternal promotor muscle (Drosophila) is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003427 name: metathoracic pleural remotor muscle 83 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003313 ! pleural remotor muscle (Drosophila) is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003428 name: metathoracic sternal remotor muscle 85 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003312 ! sternal remotor muscle (Drosophila) is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003429 name: metathoracic spiracle occlusor muscle 97 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003333 ! occlusor muscle (Drosophila) is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) [Term] id: FBbt:00003430 name: skeletal muscle of metathoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003417 ! skeletal muscle of metathorax (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00003431 name: metathoracic depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) is_a: FBbt:00003430 ! skeletal muscle of metathoracic leg (Drosophila) [Term] id: FBbt:00003432 name: metathoracic extracoxal depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003320 ! extracoxal depressor muscle (Drosophila) is_a: FBbt:00003431 ! metathoracic depressor muscle (Drosophila) [Term] id: FBbt:00003433 name: metathoracic ternal extracoxal depressor muscle 86 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003432 ! metathoracic extracoxal depressor muscle (Drosophila) [Term] id: FBbt:00003434 name: metathoracic sternal extracoxal depressor muscle 87 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003432 ! metathoracic extracoxal depressor muscle (Drosophila) [Term] id: FBbt:00003435 name: metathoracic intracoxal depressor muscle 88 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003321 ! intracoxal depressor muscle (Drosophila) is_a: FBbt:00003431 ! metathoracic depressor muscle (Drosophila) [Term] id: FBbt:00003436 name: metathoracic tibial depressor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003322 ! tibial depressor muscle (Drosophila) is_a: FBbt:00003431 ! metathoracic depressor muscle (Drosophila) [Term] id: FBbt:00003437 name: metathoracic tibial depressor muscle 92 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003436 ! metathoracic tibial depressor muscle (Drosophila) [Term] id: FBbt:00003438 name: metathoracic tibial depressor muscle 93 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003436 ! metathoracic tibial depressor muscle (Drosophila) [Term] id: FBbt:00003439 name: metathoracic tarsal depressor muscle 95 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003323 ! tarsal depressor muscle (Drosophila) is_a: FBbt:00003431 ! metathoracic depressor muscle (Drosophila) [Term] id: FBbt:00003440 name: metathoracic pretarsal depressor muscle 96 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003324 ! pretarsal depressor muscle (Drosophila) is_a: FBbt:00003431 ! metathoracic depressor muscle (Drosophila) [Term] id: FBbt:00003441 name: metathoracic levator muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) is_a: FBbt:00003430 ! skeletal muscle of metathoracic leg (Drosophila) [Term] id: FBbt:00003442 name: metathoracic intracoxal levator muscle 89 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003326 ! intracoxal levator muscle (Drosophila) is_a: FBbt:00003441 ! metathoracic levator muscle (Drosophila) [Term] id: FBbt:00003443 name: metathoracic tibial levator muscle 91 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003329 ! tibial levator muscle (Drosophila) is_a: FBbt:00003441 ! metathoracic levator muscle (Drosophila) [Term] id: FBbt:00003444 name: metathoracic tarsal levator muscle 94 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003330 ! tarsal levator muscle (Drosophila) is_a: FBbt:00003441 ! metathoracic levator muscle (Drosophila) [Term] id: FBbt:00003445 name: metathoracic reductor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003325 ! levator muscle (Drosophila) is_a: FBbt:00003430 ! skeletal muscle of metathoracic leg (Drosophila) [Term] id: FBbt:00003446 name: metathoracic femoral reductor muscle 90 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003332 ! femoral reductor muscle (Drosophila) is_a: FBbt:00003445 ! metathoracic reductor muscle (Drosophila) [Term] id: FBbt:00003447 name: skeletal muscle of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003259 ! adult somatic muscle (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00003448 name: abdominal 1 dorsal longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00003449 name: abdominal 1 dorsal longitudinal muscle 98 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003448 ! abdominal 1 dorsal longitudinal muscle (Drosophila) [Term] id: FBbt:00003450 name: abdominal 1 medial dorsal longitudinal muscle 98 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003448 ! abdominal 1 dorsal longitudinal muscle (Drosophila) [Term] id: FBbt:00003451 name: abdominal 1 lateral dorsal longitudinal muscle 99 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003448 ! abdominal 1 dorsal longitudinal muscle (Drosophila) [Term] id: FBbt:00003452 name: abdominal 1 lateral dorsal longitudinal muscle 100 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003448 ! abdominal 1 dorsal longitudinal muscle (Drosophila) [Term] id: FBbt:00003453 name: abdominal 1 oblique lateral dorsal longitudinal muscle 101 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003448 ! abdominal 1 dorsal longitudinal muscle (Drosophila) [Term] id: FBbt:00003454 name: abdominal 1 oblique lateral dorsal longitudinal muscle 102 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003448 ! abdominal 1 dorsal longitudinal muscle (Drosophila) [Term] id: FBbt:00003455 name: abdominal 1 lateral tergosternal muscle 103 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00003456 name: abdominal 1 ventral longitudinal muscle 104 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00003457 name: abdominal 1 spiracular occlusor muscle 105 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003333 ! occlusor muscle (Drosophila) is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00003458 name: abdominal 1 internal lateral muscle 106 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00003459 name: abdominal 1 oblique sternopleural muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00003460 name: abdominal 1 oblique sternopleural muscle 107 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003459 ! abdominal 1 oblique sternopleural muscle (Drosophila) [Term] id: FBbt:00003461 name: abdominal 1 oblique sternopleural muscle 108 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003459 ! abdominal 1 oblique sternopleural muscle (Drosophila) [Term] id: FBbt:00003462 name: abdominal dorsal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) [Term] id: FBbt:00003463 name: abdominal 2 dorsal muscle 109 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00003464 name: abdominal 3 dorsal muscle 115 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00003465 name: abdominal 4 dorsal muscle 121 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00003466 name: abdominal 5 dorsal muscle 127 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00003467 name: abdominal 6 dorsal muscle 133 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00003468 name: abdominal 7 female dorsal muscle 139 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00003469 name: abdominal 8 female dorsal muscle 145 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00003470 name: abdominal 8 female dorsal muscle 146 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00003471 name: abdominal 8 female dorsal muscle 147 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00003472 name: abdominal 8 female dorsal muscle 148 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003462 ! abdominal dorsal muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00003473 name: abdominal lateral tergosternal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) [Term] id: FBbt:00003474 name: abdominal 2 lateral tergosternal muscle 110 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003473 ! abdominal lateral tergosternal muscle (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00003475 name: abdominal 3 lateral tergosternal muscle 116 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003473 ! abdominal lateral tergosternal muscle (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00003476 name: abdominal 4 lateral tergosternal muscle 122 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003473 ! abdominal lateral tergosternal muscle (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00003477 name: abdominal 5 lateral tergosternal muscle 128 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003473 ! abdominal lateral tergosternal muscle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00003478 name: abdominal 6 lateral tergosternal muscle 134 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003473 ! abdominal lateral tergosternal muscle (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00003479 name: abdominal ventral muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) [Term] id: FBbt:00003480 name: abdominal 2 ventral muscle 111 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003479 ! abdominal ventral muscle (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00003481 name: abdominal 3 ventral muscle 117 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003479 ! abdominal ventral muscle (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00003482 name: abdominal 4 ventral muscle 123 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003479 ! abdominal ventral muscle (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00003483 name: abdominal 6 ventral muscle 129 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003479 ! abdominal ventral muscle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00003484 name: abdominal 6 ventral muscle 135 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003479 ! abdominal ventral muscle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00003485 name: abdominal 7 female ventral muscle 142 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003479 ! abdominal ventral muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00003486 name: abdominal 8 female ventral muscle 149 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003479 ! abdominal ventral muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00003487 name: abdominal spiracular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) [Term] id: FBbt:00003488 name: abdominal 2 spiracular muscle 112 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003487 ! abdominal spiracular muscle (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00003489 name: abdominal 3 spiracular muscle 118 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003487 ! abdominal spiracular muscle (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00003490 name: abdominal 4 spiracular muscle 124 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003487 ! abdominal spiracular muscle (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00003491 name: abdominal 5 spiracular muscle 130 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003487 ! abdominal spiracular muscle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00003492 name: abdominal 6 spiracular muscle 136 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003487 ! abdominal spiracular muscle (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00003493 name: abdominal 7 female spiracular muscle 143 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003487 ! abdominal spiracular muscle (Drosophila) is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00003494 name: abdominal oblique dorsal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) [Term] id: FBbt:00003495 name: abdominal 2 oblique dorsal muscle 113 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003494 ! abdominal oblique dorsal muscle (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00003496 name: abdominal 3 oblique dorsal muscle 119 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003494 ! abdominal oblique dorsal muscle (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00003497 name: abdominal 4 oblique dorsal muscle 125 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003494 ! abdominal oblique dorsal muscle (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00003498 name: abdominal 5 oblique dorsal muscle 131 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003494 ! abdominal oblique dorsal muscle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00003499 name: abdominal 6 oblique dorsal muscle 137 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003494 ! abdominal oblique dorsal muscle (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00003500 name: abdominal internal lateral muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003447 ! skeletal muscle of abdomen (Drosophila) [Term] id: FBbt:00003501 name: abdominal 2 internal lateral muscle 114 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003500 ! abdominal internal lateral muscle (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00003502 name: abdominal 3 internal lateral muscle 120 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003500 ! abdominal internal lateral muscle (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00003503 name: abdominal 4 internal lateral muscle 126 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003500 ! abdominal internal lateral muscle (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00003504 name: abdominal 5 internal lateral muscle 132 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003500 ! abdominal internal lateral muscle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00003505 name: male abdominal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003259 ! adult somatic muscle (Drosophila) [Term] id: FBbt:00003506 name: male abdominal 5 muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "MOL" RELATED [] synonym: "muscle of Lawrence" RELATED [] is_a: FBbt:00003505 ! male abdominal muscle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00003507 name: female abdominal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003259 ! adult somatic muscle (Drosophila) [Term] id: FBbt:00003508 name: abdominal 7 female lateral muscle 140 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00003509 name: abdominal 7 female lateral muscle 141 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00003510 name: abdominal 7 female sternal muscle 144 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00003511 name: abdominal 8 female lateral ventral muscle 150 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00003512 name: abdominal 8 female transverse ventral muscle 151 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00003513 name: female rectal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003507 ! female abdominal muscle (Drosophila) [Term] id: FBbt:00003514 name: female dorsal rectal muscle 152 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003513 ! female rectal muscle (Drosophila) [Term] id: FBbt:00003515 name: female ventral rectal muscle 153 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003513 ! female rectal muscle (Drosophila) [Term] id: FBbt:00003516 name: adult apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Apodeme that is part of an adult." [FBC:SPR] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00005091 ! apodeme (Drosophila) relationship: part_of FBbt:00003218 ! adult muscle system (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003517 name: maxillary apodeme (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003518 name: medial dorsal apodeme (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003519 name: dorsal lateral apodeme (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003520 name: ventral apodeme (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003521 name: dorsal apodeme (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - cibarial apodeme. subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003522 name: hypopharyngeal apodeme (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003523 name: aedeagal apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Long, slender apodeme extending from the base of the aedeagus into the body." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003524 name: basal apodeme of penis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003516 ! adult apodeme (Drosophila) [Term] id: FBbt:00003526 name: adult longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue [Term] id: FBbt:00003527 name: adult circular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue [Term] id: FBbt:00003528 name: adult esophageal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003131 ! adult esophagus (Drosophila) [Term] id: FBbt:00003529 name: adult esophageal circular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003528 ! adult esophageal muscle (Drosophila) [Term] id: FBbt:00003530 name: adult esophageal sphincter muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003528 ! adult esophageal muscle (Drosophila) [Term] id: FBbt:00003531 name: adult esophageal longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003528 ! adult esophageal muscle (Drosophila) [Term] id: FBbt:00003532 name: crop circular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003133 ! crop (Drosophila) [Term] id: FBbt:00003533 name: cardial muscle (Drosophila) namespace: fly_anatomy.ontology def: "Thin scattering of muscle fibers that cover the cardia." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003139 ! adult proventriculus (Drosophila) [Term] id: FBbt:00003534 name: ventriculus muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003537 ! intestine muscle (Drosophila) is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003138 ! adult midgut (Drosophila) [Term] id: FBbt:00003535 name: ventriculus circular muscle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003538 subset: cur ! cur synonym: "anterior intestine circular muscle" EXACT [] is_a: FBbt:00003527 ! adult circular muscle (Drosophila) is_a: FBbt:00003534 ! ventriculus muscle (Drosophila) [Term] id: FBbt:00003536 name: ventriculus longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003534 ! ventriculus muscle (Drosophila) [Term] id: FBbt:00003537 name: intestine muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005070 ! visceral muscle (Drosophila) [Term] id: FBbt:00003539 name: posterior intestine circular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003527 ! adult circular muscle (Drosophila) is_a: FBbt:00003537 ! intestine muscle (Drosophila) relationship: part_of FBbt:00003144 ! posterior adult hindgut (Drosophila) [Term] id: FBbt:00003540 name: posterior intestine longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003537 ! intestine muscle (Drosophila) is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003144 ! posterior adult hindgut (Drosophila) [Term] id: FBbt:00003541 name: rectal circular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003527 ! adult circular muscle (Drosophila) relationship: part_of FBbt:00003144 ! posterior adult hindgut (Drosophila) [Term] id: FBbt:00003542 name: adult salivary gland suspensor muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003135 ! adult salivary gland (Drosophila) [Term] id: FBbt:00003543 name: adult heart muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0007100 ! circulatory organ [Term] id: FBbt:00003544 name: adult heart suspensory fibril (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003543 ! adult heart muscle (Drosophila) [Term] id: FBbt:00003545 name: adult alary muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003543 ! adult heart muscle (Drosophila) [Term] id: FBbt:00003546 name: adult alary muscle 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003545 ! adult alary muscle (Drosophila) [Term] id: FBbt:00003547 name: adult alary muscle 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003545 ! adult alary muscle (Drosophila) [Term] id: FBbt:00003548 name: adult alary muscle 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003545 ! adult alary muscle (Drosophila) [Term] id: FBbt:00003549 name: adult alary muscle 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003545 ! adult alary muscle (Drosophila) [Term] id: FBbt:00003550 name: ventral adult heart longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003543 ! adult heart muscle (Drosophila) [Term] id: FBbt:00003551 name: ejaculatory bulb muscle (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00004962 ! ejaculatory bulb (Drosophila) [Term] id: FBbt:00003552 name: penis protractor muscle (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur synonym: "aedeagus protractor muscle" RELATED [] is_a: FBbt:00003551 ! ejaculatory bulb muscle (Drosophila) relationship: part_of FBbt:00004852 ! penis (Drosophila) [Term] id: FBbt:00003553 name: common oviduct circular muscle (Drosophila) namespace: fly_anatomy.ontology def: "A striated array of circular muscle fibers forming an almost continuous sheet around the common oviduct." [FlyBase:FBrf0193596] subset: cur ! cur is_a: FBbt:00003527 ! adult circular muscle (Drosophila) relationship: part_of FBbt:00004913 ! common oviduct (Drosophila) [Term] id: FBbt:00003554 name: uterine circular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003527 ! adult circular muscle (Drosophila) relationship: part_of UBERON:0006834 ! uterus or analog [Term] id: FBbt:00003555 name: spermathecal duct longitudinal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0000994 ! spermathecum [Term] id: FBbt:00003556 name: gonadal sheath muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue [Term] id: FBbt:00003557 name: ovarian sheath muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003556 ! gonadal sheath muscle (Drosophila) relationship: part_of UBERON:0004911 ! epithelium of female gonad [Term] id: FBbt:00003558 name: testis sheath muscle (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00003556 ! gonadal sheath muscle (Drosophila) relationship: part_of UBERON:0004910 ! epithelium of male gonad [Term] id: FBbt:00003559 name: adult nervous system (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0002482, FlyBase:FBrf0007196, FlyBase:FBrf0007735, FlyBase:FBrf0034076] subset: cur ! cur is_a: UBERON:0001016 ! nervous system relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003560 name: adult neuroblast namespace: fly_anatomy.ontology def: "A neuroblast of the adult." [FBC:DOS] is_obsolete: true consider: FBbt:00005146 ! neuroblast comment: Obsoleted because no published evidence of the existence of neuroblasts in the adult found (DOS110616). Usage in curation seems to be either plain wrong or referring to neuroblasts that make adult neurons. Maintaining such a class by hand would not be practical. There are technical challenges to maintaining it using reasoning. subset: cur ! cur [Term] id: FBbt:00003561 name: thoracic neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Any neuroblast (FBbt:00005146) that is part of some thorax (FBbt:00000015)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000031 ! neuroblast relationship: part_of FBbt:00000015 ! thorax (Drosophila) [Term] id: FBbt:00003562 name: thoracic neuroblast t2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013561 ! thoracic neuroblast t (Drosophila) [Term] id: FBbt:00003563 name: thoracic neuroblast t3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013561 ! thoracic neuroblast t (Drosophila) [Term] id: FBbt:00003564 name: thoracic neuroblast t1 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00013561 ! thoracic neuroblast t (Drosophila) [Term] id: FBbt:00003565 name: thoracic neuroblast g (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast located in one of a bilateral pair of neuroblasts at the dorsal margin of the cortex near the posterior boundary of each larval thoracic neuromere." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00003566 name: thoracic neuroblast c (Drosophila) namespace: fly_anatomy.ontology def: "Lateral neuroblast of larval thoracic segment. One of a pair of these neuroblasts is present per thoracic segment - adjacent to but deeper than the al neuroblast at the lateral margin of the CNS." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00003567 name: thoracic neuroblast l1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013567 ! thoracic neuroblast l (Drosophila) [Term] id: FBbt:00003568 name: thoracic neuroblast l2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013567 ! thoracic neuroblast l (Drosophila) [Term] id: FBbt:00003569 name: thoracic neuroblast l3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013567 ! thoracic neuroblast l (Drosophila) [Term] id: FBbt:00003570 name: thoracic neuroblast l4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013567 ! thoracic neuroblast l (Drosophila) [Term] id: FBbt:00003571 name: thoracic neuroblast x (Drosophila) namespace: fly_anatomy.ontology def: "One of a bilaterally symmetric pair of neuroblasts located near the anterior boundary of each thoracic segment, lateral to the lateral-most thoracic neuroblast s." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00003572 name: thoracic neuroblast s1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013572 ! thoracic neuroblast s (Drosophila) [Term] id: FBbt:00003573 name: thoracic neuroblast s2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013572 ! thoracic neuroblast s (Drosophila) [Term] id: FBbt:00003574 name: thoracic neuroblast s3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013572 ! thoracic neuroblast s (Drosophila) [Term] id: FBbt:00003575 name: thoracic neuroblast s4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00013572 ! thoracic neuroblast s (Drosophila) [Term] id: FBbt:00003576 name: thoracic neuroblast d1 (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most (?) thoracic neuroblast d." [FlyBase:FBrf0047185] comment: Not clear how the numbering of these neuroblasts works. Assuming numbered from midline out. ds090624. subset: cur ! cur is_a: FBbt:00007343 ! thoracic neuroblast d (Drosophila) [Term] id: FBbt:00003577 name: thoracic neuroblast d2 (Drosophila) namespace: fly_anatomy.ontology def: "Middle (?) thoracic neuroblast d." [FlyBase:FBrf0047185] comment: Not clear how the numbering of these neuroblasts works. Assuming numbered from midline out. ds090624. subset: cur ! cur is_a: FBbt:00007343 ! thoracic neuroblast d (Drosophila) [Term] id: FBbt:00003578 name: thoracic neuroblast d3 (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most (?) thoracic neuroblast d." [FlyBase:FBrf0047185] comment: Not clear how the numbering of these neuroblasts works. Assuming numbered from midline out. ds090624. subset: cur ! cur is_a: FBbt:00007343 ! thoracic neuroblast d (Drosophila) [Term] id: FBbt:00003579 name: thoracic neuroblast b1 (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most (?) of each pair of b neuroblasts." [FlyBase:FBrf0047815] comment: Not clear on origin of numbering for subtypes of b neuroblasts. Have assumed numbered from medial to lateral. subset: cur ! cur is_a: FBbt:00007342 ! thoracic neuroblast b (Drosophila) [Term] id: FBbt:00003580 name: thoracic neuroblast b2 (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most (?) of each pair of b neuroblasts." [FlyBase:FBrf0047815] comment: Not clear on origin of numbering for subtypes of b neuroblasts. Have assumed numbered from medial to lateral. ds090624. subset: cur ! cur is_a: FBbt:00007342 ! thoracic neuroblast b (Drosophila) [Term] id: FBbt:00003581 name: thoracic neuroblast w (Drosophila) namespace: fly_anatomy.ontology def: "Small neuroblast located medially, one either side of the midline, between the two rows of s neuroblasts." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00003582 name: thoracic neuroblast al (Drosophila) namespace: fly_anatomy.ontology def: "Anterior lateral neuroblast of larval thoracic segment. One of a pair of these neuroblasts is present per thoracic segment - located superficially and at the lateral margin of the CNS." [FlyBase:FBrf0047815] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00003583 name: thoracic neuroblast M (Drosophila) namespace: fly_anatomy.ontology def: "Medial, superficial neuroblast of the larval thorax. A single neuroblast is located caudally in each thoracic segment, on the ventral midline." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00003584 name: abdominal neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Any neuroblast (FBbt:00005146) that is part of some abdomen (FBbt:00000020)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000031 ! neuroblast relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00003585 name: abdominal 1 neuroblast t1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003586 name: abdominal 1 neuroblast t2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003587 name: abdominal 1 neuroblast t3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003588 name: abdominal 1 neuroblast g (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003589 name: abdominal 1 neuroblast x (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003590 name: abdominal 1 neuroblast s1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003591 name: abdominal 1 neuroblast s2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003592 name: abdominal 1 neuroblast al (Drosophila) namespace: fly_anatomy.ontology def: "Anterior lateral neuroblast of larval abdominal segment 1. One of a pair of these neuroblasts is present per thoracic segment - located superficially and at the lateral margin of the CNS." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003593 name: abdominal 1 neuroblast M (Drosophila) namespace: fly_anatomy.ontology def: "Medial, superficial neuroblast of larval abdominal segment 1. A single neuroblast is located caudally in each thoracic segment, on the ventral midline." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00003594 name: abdominal 2 neuroblast dorso-lateral cluster (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076116] subset: cur ! cur synonym: "dl" RELATED [] is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00003595 name: abdominal 2 ventro-lateral cluster neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "vl" RELATED [] is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00005134 ! ventro-lateral serotonergic neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00003596 name: abdominal 2 neuroblast ventro-medial cluster (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076116] subset: cur ! cur synonym: "paramedial cell" RELATED [] synonym: "vm" RELATED [] is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00003597 name: abdominal 2 neuroblast medial cluster (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076116] subset: cur ! cur synonym: "m" RELATED [] is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00003598 name: abdominal neuroblast dorso-lateral cluster (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076116] subset: cur ! cur synonym: "dl" RELATED [] is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00003599 name: abdominal 3 neuroblast dorso-lateral cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003598 ! abdominal neuroblast dorso-lateral cluster (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00003600 name: abdominal 4 neuroblast dorso-lateral cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003598 ! abdominal neuroblast dorso-lateral cluster (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00003601 name: abdominal 5 neuroblast dorso-lateral cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003598 ! abdominal neuroblast dorso-lateral cluster (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00003602 name: abdominal 6 neuroblast dorso-lateral cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003598 ! abdominal neuroblast dorso-lateral cluster (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00003603 name: abdominal 7 neuroblast dorso-lateral cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003598 ! abdominal neuroblast dorso-lateral cluster (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00003604 name: abdominal ventro-lateral cluster neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076116] subset: cur ! cur synonym: "vl" RELATED [] is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00003605 name: abdominal 3 ventro-lateral cluster neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00005134 ! ventro-lateral serotonergic neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00003606 name: abdominal 4 ventro-lateral cluster neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00005134 ! ventro-lateral serotonergic neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00003607 name: abdominal 5 ventro-lateral cluster neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00005134 ! ventro-lateral serotonergic neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00003608 name: abdominal 6 ventro-lateral cluster neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00005134 ! ventro-lateral serotonergic neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00003609 name: abdominal 7 ventro-lateral cluster neuroblast (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003604 ! abdominal ventro-lateral cluster neuroblast (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00003610 name: abdominal neuroblast ventro-medial cluster (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076116] subset: cur ! cur synonym: "paramedial cell" RELATED [] synonym: "vm" RELATED [] is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00003611 name: abdominal 3 neuroblast ventro-medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003610 ! abdominal neuroblast ventro-medial cluster (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00003612 name: abdominal 4 neuroblast ventro-medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003610 ! abdominal neuroblast ventro-medial cluster (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00003613 name: abdominal 5 neuroblast ventro-medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003610 ! abdominal neuroblast ventro-medial cluster (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00003614 name: abdominal 6 neuroblast ventro-medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003610 ! abdominal neuroblast ventro-medial cluster (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00003615 name: abdominal 7 neuroblast ventro-medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003610 ! abdominal neuroblast ventro-medial cluster (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00003616 name: abdominal neuroblast medial cluster (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0076116] subset: cur ! cur synonym: "m" RELATED [] is_a: FBbt:00003584 ! abdominal neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00003617 name: abdominal 3 neuroblast medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003616 ! abdominal neuroblast medial cluster (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00003618 name: abdominal 4 neuroblast medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003616 ! abdominal neuroblast medial cluster (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00003619 name: abdominal 5 neuroblast medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003616 ! abdominal neuroblast medial cluster (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00003620 name: abdominal 6 neuroblast medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003616 ! abdominal neuroblast medial cluster (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00003621 name: abdominal 7 neuroblast medial cluster (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003616 ! abdominal neuroblast medial cluster (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00003622 name: posterior tip cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) [Term] id: FBbt:00003623 name: adult central nervous system (Drosophila) namespace: fly_anatomy.ontology def: "Central nervous system of the adult." [FBC:SPR] subset: cur ! cur is_a: UBERON:0001017 ! central nervous system relationship: part_of FBbt:00003559 ! adult nervous system (Drosophila) [Term] id: FBbt:00003624 name: adult brain (Drosophila) namespace: fly_anatomy.ontology def: "Brain of the adult." [FBC:SPR] subset: BrainName ! BrainName project terms subset: cur ! cur is_a: UBERON:0000955 ! brain relationship: part_of FBbt:00003007 ! adult head (Drosophila) relationship: part_of FBbt:00003623 ! adult central nervous system (Drosophila) [Term] id: FBbt:00003625 name: adult brain cortex (Drosophila) namespace: fly_anatomy.ontology def: "Superficial layer of the brain, composed of glia and the cell bodies of neurons (soma)." [FBC:VH] subset: cur ! cur synonym: "cerebral cortex" RELATED [] synonym: "perikaryal rind" EXACT [] is_a: FBbt:00007114 ! cortex of the central nervous system (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003626 name: supraesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "The pre-oral neuropils of the brain located above the esophagus and comprising three fused ganglia (protocerebrum, deuterocerebrum, and tritocerebrum) in the head." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur is_a: UBERON:0000045 ! ganglion relationship: develops_from FBbt:00001920 ! embryonic/larval brain (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003627 name: protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00000008 ! labral segment (Drosophila) [Term] id: FBbt:00003628 name: adult DN period neuron (Drosophila) namespace: fly_anatomy.ontology def: "Period (FBgn0003068) expressing neuron of the adult brain whose cell body is located in the posterior, dorsal-most cortex." [FlyBase:FBrf0056576, FlyBase:FBrf0098279, FlyBase:FBrf0162235] comment: Kaneko et al., (1997) suggest that the larval DN period neurons could be the same cells as the adult DN period neurons based on position of the soma. However, they further comment that these cells do not continuously express Period (FBgn0003068) throughout the developmental stages, making developmental profiling difficult. Furthermore, antiphase cycling of Period observed in larval DN period neuron-2 was not found in either the pupal or adult DN period neuron-2, suggesting that these cells would have to change their Period cycling phase during metamorphosis if they are the same cells. Because of this uncertainty, this ontology does not currently record a developmental relationship between the larval and adult DN neurons. synonym: "DN period neuron" RELATED [] synonym: "adult dorsal neuron" RELATED [] is_a: FBbt:00100163 ! adult pacemaker neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003629 name: DN1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "DN (dorsal Period-expressing neuron of adult brain) whose cell body is located dorsal to the projections of the `s-LNv Pdf neurons` (FBbt:00003764). There are about 17 of these per cluster." [FlyBase:FBrf0183981, FlyBase:FBrf0193849] synonym: "adult dorsal neuron 1" RELATED [] synonym: "adult dorsal neuron-2" RELATED [] is_a: FBbt:00003628 ! adult DN period neuron (Drosophila) [Term] id: FBbt:00003630 name: DN2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "DN (dorsal Period-expressing neuron of adult brain) whose medium-sized cell body is located posteriorly in the dorsal superior brain, ventral to the projections of the `s-LNv Pdf neurons` (FBbt:00003764). There are 2 cells in each DN2 cluster." [FlyBase:FBrf0183981] subset: cur ! cur synonym: "DN2" RELATED [] synonym: "adult dorsal neuron 2" RELATED [] synonym: "adult dorsal neuron-2" RELATED [] is_a: FBbt:00003628 ! adult DN period neuron (Drosophila) [Term] id: FBbt:00003631 name: DN3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "DN (dorsal Period-expressing neuron of adult brain) with a cell body located in the lateral-most cluster of Period expressing DN neurons. There are around 40 cells in each cluster." [FlyBase:FBrf0193849] subset: cur ! cur synonym: "DN3" RELATED [] synonym: "adult dorsal neuron-3" RELATED [] is_a: FBbt:00003628 ! adult DN period neuron (Drosophila) [Term] id: FBbt:00003632 name: adult central complex (Drosophila) namespace: fly_anatomy.ontology def: "A midline crossing complex of 5 synaptic neuropil domains: the ellipsoid body, the fan-shaped body, the paired noduli, the bulb (lateral triangle), and the protocerebral bridge. It is closely associated with another paired synaptic neuropil domain, the lateral accessory lobe. It lies in the middle of the brain between the pedunculi of the mushroom bodies and is bounded ventrally by the esophagus, dorsally by the pars intercerebralis and laterally by the antenno-glomerular tracts." [FlyBase:FBrf0049409, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] comment: Some authors' use of the term 'central body' excludes the protocerebral bridge, some usage also excludes the noduli, some exclude the lateral triangles, and historically it has been used to refer to the fan-shaped body alone (Hanesch et al., 1989). subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "adult central body complex" EXACT [] synonym: "central body" RELATED [] synonym: "central body complex" RELATED [] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: develops_from FBbt:00007070 ! centro-posterior medial synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00003633 name: small field neuron (Drosophila) namespace: fly_anatomy.ontology def: "An interneuron whose arborization fields are small." [FlyBase:FBrf0049409] subset: cur ! cur is_a: CL:0000099 ! interneuron [Term] id: FBbt:00003634 name: vertical fiber system neuron (Drosophila) namespace: fly_anatomy.ontology def: "Small field neuron of the central complex that arborizes in a single glomerulus of the protocerebral bridge, layer one or two of the fan-shaped body and the contralateral nodulus. Fibers of two adjacent glomeruli join into bundles that run ipsilaterally to the fan-shaped body and enter it in the fourth layer without crossing each other." [FlyBase:FBrf0049409] comment: Not to be confused with the vertical system (VS) neurons of the lobula plate (FBbt:00007516). subset: cur ! cur synonym: "VFS" RELATED [FlyBrain_NDB:10240] xref: FlyBrain_NDB:10240 is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003635 name: horizontal fiber system neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body lies in the cortex just dorsal to the protocerebral bridge and that innervates a single glomerulus of the protocerebral bridge, a segment pair of the fan-shaped body and one of the two ventral bodies (lateral accessory lobes). Bundles of 3 or 4 horizontal fiber system neurons connect each glomerulus to a fan-shaped body segment and then run horizontally in layer 4 where they arborize in all 4 shells. Arborizations in the protocerebral bridge are spiny, terminals in the ventral bodies are blebs, both types of terminals are formed in the fan-shaped body." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "HFS" EXACT [FlyBase:FBrf0049409, FlyBrain_NDB:10254] synonym: "heavy fibers" EXACT [FlyBase:FBrf0006003] xref: FlyBrain_NDB:10254 is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003636 name: pontine neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that is intrinsic (local) to a single neuropil domain of the central complex and that connects two substructures of it." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003637 name: eb-pb-vbo neuron (Drosophila) namespace: fly_anatomy.ontology def: "Small field neuron of the central complex that connects a large dorso-lateral area of the ellipsoid body to a lateral glomerulus of the ipsilateral protocerebral bridge and to either the ipsilateral or contralateral lateral accessory lobe (ventral body). Forms club-like terminals in the protocerebral bridge and spiny arborizations in the ellipsoid body." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003638 name: eb-no neuron (Drosophila) namespace: fly_anatomy.ontology def: "Small field neuron of the central complex that innervates only the ellipsoid body and the nodulus." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "CCI (no-eb1)" EXACT [FlyBrain_NDB:10250] xref: FlyBrain_NDB:10250 is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003639 name: fb-no neuron (Drosophila) namespace: fly_anatomy.ontology def: "Small field neuron of the central complex that has small arborizations with club-like fiber endings in the fan-shaped body and terminates with spines and blebs in the contralateral nodulus." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "CCI (fb-no)" EXACT [FlyBrain_NDB:10249] xref: FlyBrain_NDB:10249 is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003640 name: fb-eb neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron intrinsic to the central complex that arborizes in only the fan-shaped body and the ellipsoid body." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003641 name: fb-eb-no neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron intrinsic to the central complex that arborizes in only the fan-shaped body, the ellipsoid body and the nodulus." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003642 name: fb-ltr neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron of the adult central complex that innervates only the fan-shaped body and the bulbs (lateral triangles)." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003643 name: pb-no neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron of the adult central complex that innervates only the protocerebral bridge and the noduli." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "CCI (pb-no1)" EXACT [FlyBrain_NDB:10248] xref: FlyBrain_NDB:10248 is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003644 name: pb-fb-fb neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron of the adult central complex that innervates only the protocerebral bridge and either two adjacent segments of one layer of the fan-shaped body or adjacent layers of a single segment." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003645 name: pb-eb-eb neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron of the adult central complex that innervates only the protocerebral bridge and two sectors of the ellipsoid body." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003646 name: pb-eb-no neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron of the adult central complex that innervates only the protocerebral bridge, the ellipsoid body and the ipsilateral nodulus." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "CCI (pb-eb-no1)" EXACT [FlyBrain_NDB:10241] xref: FlyBrain_NDB:10241 is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003647 name: pb-fb-eb neuron (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron of the adult central complex that innervates only the protocerebral bridge, the ellipsoid body and the fan-shaped body." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007514 ! small field neuron of the central complex (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003648 name: large field neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron with one or more large arborization fields relative to the neuropil domain(s) it innervates." [FBC:DOS] subset: cur ! cur is_a: CL:0000099 ! interneuron relationship: part_of UBERON:0002606 ! neuropil [Term] id: FBbt:00003649 name: ring neuron (Drosophila) namespace: fly_anatomy.ontology def: "A large field neuron that forms ring-shaped arborizations in the ellipsoid body that circle the ellipsoid body canal. These arborizations may form complete or partial rings." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00007515 ! large field neuron of the central complex (Drosophila) [Term] id: FBbt:00003650 name: ring neuron R1 (Drosophila) namespace: fly_anatomy.ontology def: "Ring neuron R that arborizes in an inner ring of the ellipsoid body, close to the ellipsoid body canal. Arborizing branches originate in the ellipsoid body canal and extend outwards." [FlyBase:FBrf0049409, FlyBase:FBrf0111476] subset: cur ! cur synonym: "R1 neuron" EXACT [FlyBase:FBrf0111476] synonym: "ebR1" EXACT [FlyBrain_NDB:10260] xref: FlyBrain_NDB:10260 is_a: FBbt:00007507 ! ring neuron R (Drosophila) [Term] id: FBbt:00003651 name: ring neuron R2 (Drosophila) namespace: fly_anatomy.ontology def: "Ring neuron R that arborizes only in the outer ring of the ellipsoid body. Arborizing branches originate in the ellipsoid body canal and radiate outwards." [FlyBase:FBrf0049409, FlyBase:FBrf0111476, FlyBase:FBrf0210156] subset: cur ! cur synonym: "R2 neuron" EXACT [FlyBase:FBrf0111476] synonym: "ebR2" EXACT [FlyBrain_NDB:10262] xref: FlyBrain_NDB:10262 is_a: FBbt:00007507 ! ring neuron R (Drosophila) [Term] id: FBbt:00003652 name: ring neuron R3 (Drosophila) namespace: fly_anatomy.ontology def: "Ring neuron R that arborizes in the anterior layer of the inner and outer rings of the ellipsoid body. Arborizing branches originate in the ellipsoid body canal and extend outwards." [FlyBase:FBrf0049409, FlyBase:FBrf0111476] synonym: "R3 neuron" EXACT [FlyBase:FBrf0111476] synonym: "ebR3" EXACT [FlyBrain_NDB:10263] xref: FlyBrain_NDB:10263 is_a: FBbt:00007507 ! ring neuron R (Drosophila) [Term] id: FBbt:00003653 name: ring neuron R4 (Drosophila) namespace: fly_anatomy.ontology def: "Ring neuron R that arborizes only in the outer ring of the ellipsoid body. Arborizing branches originate in the periphery of the ellipsoid body canal and extend inwards." [FlyBase:FBrf0049409, FlyBase:FBrf0111476] subset: cur ! cur synonym: "R4 neuron" EXACT [FlyBase:FBrf0111476] synonym: "ebR4" EXACT [FlyBrain_NDB:10261] xref: FlyBrain_NDB:10261 is_a: FBbt:00007507 ! ring neuron R (Drosophila) [Term] id: FBbt:00003654 name: extrinsic ring neuron (Drosophila) namespace: fly_anatomy.ontology def: "Ring neuron with arborizations outside the central complex." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "ExR" RELATED [] is_a: FBbt:00003649 ! ring neuron (Drosophila) is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) [Term] id: FBbt:00003655 name: extrinsic ring neuron ExR1 (Drosophila) namespace: fly_anatomy.ontology def: "Extrinsic ring neuron with a large soma located in the pars intercerebralis. It projects ventrally and ipsilaterally, arborizing in the superior medial protocerebrum (smpr), the upper fan-shaped body and lateral accessory lobes (ventral bodies). Its main projection then encircles the ellipsoid body and sends multiple evenly spaced projections that arborize in an anterior ring corresponding to the arborization domain of R3 neurons. Arborizations of this neuron are spiny (Hanesch et al., 1989). They are presynaptic in the fan-shaped body and ellipsoid body and postsynaptic in the lateral accessory lobes and smpr (Armstrong and Young, 2010)." [FlyBase:FBrf0049409, FlyBase:FBrf0210154] comment: Sites inferred to be presynaptic by localization of fluorescently tagged synaptobrevin and to be post-synaptic by localization of fluorescently tagged DSCAM (Young and Armstrong, 2010). subset: cur ! cur synonym: "ExR1" EXACT [FlyBrain_NDB:10264] xref: FlyBrain_NDB:10264 is_a: FBbt:00003654 ! extrinsic ring neuron (Drosophila) [Term] id: FBbt:00003656 name: extrinsic ring neuron ExR2 (Drosophila) namespace: fly_anatomy.ontology def: "Extrinsic ring neuron that arborizes with blebs in the posterior of the ellipsoid body. It branches in the median protocerebrum." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "ExR2" EXACT [FlyBrain_NDB:10265] xref: FlyBrain_NDB:10265 is_a: FBbt:00003654 ! extrinsic ring neuron (Drosophila) [Term] id: FBbt:00003657 name: fan-shaped neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron with a large arborization field that forms a quasi-horizontal strata within the fan-shaped body that fills it in both the transverse and longitudinal directions. They mostly extend caudally from the anterior margin of the fan-shaped body. This pattern makes some of them look like a fan, although the strata in most cases do not show a separation into 8 (or 16) segments. Some subtypes are specific to a single fan-shaped body layer." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "F neuron" EXACT [FlyBase:FBrf0049409, FlyBase:FBrf0210154] synonym: "fan shaped neuron" EXACT [] is_a: FBbt:00007515 ! large field neuron of the central complex (Drosophila) [Term] id: FBbt:00003658 name: median fan-shaped neuron Fm (Drosophila) namespace: fly_anatomy.ontology def: "Fan-shaped neuron that projects through the ellipsoid body canal via the median bundle to arborize with bleb-like terminals in the second layer of the fan-shaped body." [FlyBase:FBrf0049409] subset: cur ! cur synonym: "Fm neuron" RELATED [FlyBase:FBrf0049409] synonym: "Fm1" EXACT [FlyBrain_NDB:10268] xref: FlyBrain_NDB:10268 is_a: FBbt:00007541 ! fan-shaped neuron F2 (Drosophila) [Term] id: FBbt:00003659 name: lateral fan-shaped neuron Fl (Drosophila) namespace: fly_anatomy.ontology def: "Fan-shaped neuron with a fiber that reaches the fan-shaped body laterally and that extends along its anterior surface." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003657 ! fan-shaped neuron (Drosophila) [Term] id: FBbt:00003660 name: extrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "An interneuron that extends projections between different neuropil domains." [FBC:DOS, FBC:SPR] subset: cur ! cur is_a: CL:0000099 ! interneuron relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00003661 name: extrinsic pb neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any extrinsic neuron (FBbt:00003660) that has synaptic terminals in some protocerebral bridge (FBbt:00003668)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) [Term] id: FBbt:00003662 name: extrinsic no neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any extrinsic neuron (FBbt:00003660) that has synaptic terminals in some nodulus (FBbt:00003680)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) [Term] id: FBbt:00003663 name: extrinsic al-pb neuron (Drosophila) namespace: fly_anatomy.ontology def: "A serotonergic neuron that innervates the antennal lobe, projects along the outer antenno-cerebral tract (also known as the antenno-glomerular tract) and innervates the protocerebral bridge and the superior lateral protocerebrum." [FlyBase:FBrf0049409, FlyBase:FBrf0210156] subset: cur ! cur synonym: "extrinsic ag-pb neuron" EXACT [] synonym: "serotonergic ag-pb neuron" EXACT [FlyBase:FBrf0049409] is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00003661 ! extrinsic pb neuron (Drosophila) [Term] id: FBbt:00003664 name: intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005126 def: "A neuron arborizing exclusively within a given neuropil domain. Intrinsic (local) interneurons may be ipsilateral, restricted to one of side of a paired neuropil domain, or bilateral, extending a process across the midline and arborizing in both sides of a pair of bilaterally symmetric neuropil domains." [FBC:DOS, FBC:SPR, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur synonym: "local interneuron" EXACT [] is_a: CL:0000099 ! interneuron [Term] id: FBbt:00003665 name: intrinsic vbo neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that innervates only the lateral accessory lobe (ventral body)." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003666 name: intrinsic pb neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that innervates only the protocerebral bridge." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003667 name: lateral ellipsoid body tract (Drosophila) namespace: fly_anatomy.ontology def: "A transverse tract within the protocerebrum that is connected to the inferior medial/lateral protocerebrum and the central complex." [FBC:VH, ISBN:978-3-540-07343-7] comment: From Strausfeld (ISBN:978-3-540-07343-7) pg 83,79 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH. subset: cur ! cur synonym: "lateral ellipsoid tract" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00003668 name: protocerebral bridge (Drosophila) namespace: fly_anatomy.ontology def: "A row of 16 connected glomeruli (8 on each side of the midline) that forms a dorso-posteriorly located part of the central complex embedded in the cortex between the calyces of the two mushroom bodies." [FlyBase:FBrf0049409, VFB_vol:00003668, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "PB" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "pb" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003669 name: protocerebral bridge glomerulus (Drosophila) namespace: fly_anatomy.ontology def: "One of the 16 glomeruli that make up the protocerebral bridge." [FlyBase:FBrf0049409] subset: cur ! cur is_a: UBERON:0001047 ! neural glomerulus relationship: part_of FBbt:00003668 ! protocerebral bridge (Drosophila) [Term] id: FBbt:00003670 name: protocerebral bridge glomerulus 1 (Drosophila) namespace: fly_anatomy.ontology def: "Protocerebral glomerulus located at the midline." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003671 name: protocerebral bridge glomerulus 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second protocerebral glomerulus from the midline." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003672 name: protocerebral bridge glomerulus 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third protocerebral glomerulus from the midline." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003673 name: protocerebral bridge glomerulus 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth protocerebral glomerulus from the midline." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003674 name: protocerebral bridge glomerulus 5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth protocerebral glomerulus from the midline." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003675 name: protocerebral bridge glomerulus 6 (Drosophila) namespace: fly_anatomy.ontology def: "Sixth protocerebral glomerulus from the midline." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003676 name: protocerebral bridge glomerulus 7 (Drosophila) namespace: fly_anatomy.ontology def: "Seventh protocerebral glomerulus from the midline." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003677 name: protocerebral bridge glomerulus 8 (Drosophila) namespace: fly_anatomy.ontology def: "Eighth protocerebral glomerulus from the midline. This is the most lateral protocerebral glomerulus." [FlyBase:FBrf0049409] subset: cur ! cur is_a: FBbt:00003669 ! protocerebral bridge glomerulus (Drosophila) [Term] id: FBbt:00003678 name: ellipsoid body (Drosophila) namespace: fly_anatomy.ontology def: "A doughnut shaped synaptic neuropil domain of the central complex of the adult brain that lies just anterior to the fan-shaped body. Its hole (the ellipsoid body canal) points anteriorly and has an axon tract (the anterior bundle) running through it. It is divided into concentric layers and into 16 radial segments, 8 per hemisphere." [FBC:BrainName, VFB_vol:00003678, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "EB" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "eb" RELATED [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045020 ! central body (Drosophila) [Term] id: FBbt:00003679 name: fan-shaped body (Drosophila) namespace: fly_anatomy.ontology def: "The largest synaptic neuropil domain of the adult central complex, covered by an extensive glial sheath. It is a regular structure of horizontal layers and 16 vertical segments (sometimes called staves or columns), 8 per hemisphere - arranged in 4 closely associated pairs. Its inferior part is much narrower than its superior part, forming a fan shape. Fibers emerging from the basal-most area of the fan project to the noduli. Rostro-caudally, it can be divided into 4 shells on the basis of the extent and position of small field arborizations." [FBC:BrainName, FlyBase:FBrf0049409, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "FB" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "fan shaped body" EXACT [] synonym: "fb" EXACT [FlyBase:FBrf0049409] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045020 ! central body (Drosophila) [Term] id: FBbt:00003680 name: nodulus (Drosophila) namespace: fly_anatomy.ontology def: "Paired synaptic neuropil domain of the adult brain located just caudal to the ellipsoid body in the central complex. It is roughly spherical and is divided into two subunits along the anterior-posterior axis." [FlyBase:FBrf0049409, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "NO" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "no" EXACT [] synonym: "noduli" RELATED [] synonym: "ventral tubercle" EXACT [FlyBase:FBrf0049409] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00003681 name: lateral accessory lobe (Drosophila) namespace: fly_anatomy.ontology def: "A bilaterally paired synaptic neuropil domain with a roughly pyramidal shape that is located inferior-lateral to the ellipsoid body and anterior-inferior to the bulb (lateral triangle). It lies behind the antennal lobe and in front of the ventral complex." [FBC:BrainName, VFB_vol:00003681, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "vbo" EXACT [] synonym: "ventral body" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: develops_from FBbt:00007067 ! baso-central synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040001 ! lateral complex (Drosophila) [Term] id: FBbt:00003682 name: bulb (Drosophila) namespace: fly_anatomy.ontology def: "A bilaterally paired synaptic neuropil domain located lateral to the ellipsoid body. It contains many bulbous structures." [FBC:BrainName, VFB_vol:00003682] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. subset: cur ! cur synonym: "BU" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "isthmus" EXACT [] synonym: "lateral triangle" EXACT [] synonym: "ltr" RELATED [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040001 ! lateral complex (Drosophila) [Term] id: FBbt:00003683 name: median bundle (Drosophila) namespace: fly_anatomy.ontology def: "Tract located in the anterior midline of the adult brain. It emerges as a paired tract from a broad area around the esophagus, merging into a single tract at the tip of the flange (FBbt:00045050) and terminates in the superior lateral protocerebrum (FBbt:00007054)." [FBC:BrainName, ISBN:978-3-540-07343-7, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html] subset: cur ! cur synonym: "MBDL" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "VAC1" RELATED [] synonym: "mb" RELATED [] is_a: UBERON:0001018 ! axon tract relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00003684 name: adult mushroom body (Drosophila) namespace: fly_anatomy.ontology def: "Mushroom body of the adult." [FlyBase:FBrf0105215] subset: cur ! cur synonym: "corpora pedunculata" RELATED [] is_a: UBERON:0001058 ! mushroom body relationship: develops_from FBbt:00011929 ! larval mushroom body (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00003685 name: mushroom body calyx (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil domain containing the dendrites of mushroom body intrinsic cells and receiving sensory interneuron afferents, mainly from the antennal lobes." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "CA" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "calyx" RELATED [] synonym: "calyx of corpora pedunculata" EXACT [] synonym: "calyx of mushroom body" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00003686 name: Kenyon cell (Drosophila) namespace: fly_anatomy.ontology def: "A Kenyon cell is an intrinsic neuron of the mushroom body. Its cell body, situated in the cortex above the calyx of the mushroom body, is smaller than those in the surrounding midbrain cortex. Four short fascicles extend from the cell bodies of the Kenyon cells into the calyx. Each fascicle corresponds to axons from a set of cell bodies descended from a single mushroom body neuroblast. These 4 smaller fascicles converge in the calyx where they arborize. They emerge from the calyx as a thick axon bundle referred to as the peduncle that bifurcates to innervate the dorsal and medial lobes of the mushroom body." [FlyBase:FBrf0092568, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/silver/horiz/hrsil22.html] subset: cur ! cur synonym: "intrinsic cell of mushroom body" EXACT [] synonym: "intrinsic neuron of mushroom body" EXACT [] is_a: FBbt:00007484 ! mushroom body intrinsic neuron (Drosophila) relationship: develops_from FBbt:00007113 ! mushroom body neuroblast (Drosophila) relationship: part_of FBbt:00003684 ! adult mushroom body (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00003687 name: mushroom body pedunculus (Drosophila) namespace: fly_anatomy.ontology def: "A bundle of neuron projections of Kenyon cells, dense with synapses, that extends from the calyx of the mushroom body to the base of the mushroom body lobe system." [FlyBase:FBrf0092568, VFB_vol:00003687, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "PED" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "peduncle" EXACT [] synonym: "peduncle of mushroom body" EXACT [] synonym: "peduncule" EXACT [] synonym: "peduncule of mushroom body" EXACT [] synonym: "pedunculus" EXACT [] synonym: "stalk of corpora pedunculata" EXACT [] synonym: "stalk of mushroom body" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00003688 name: lobe system of mushroom body (Drosophila) namespace: fly_anatomy.ontology def: "The mushroom body lobe system consists of a dorsal branch composed of two intertwined lobes (alpha and alpha') and a medial branch consisting of three parallel lobes (beta, beta' and gamma)." [FlyBase:FBrf0105215] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "lobe of corpora pedunculata" RELATED [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003684 ! adult mushroom body (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00003690 name: mushroom body alpha-lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00045013 def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "alpha L" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "alpha-lobe" EXACT [] synonym: "alpha-lobe of mushroom body" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005407 ! mushroom body vertical lobe (Drosophila) [Term] id: FBbt:00003691 name: mushroom body alpha'-lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00045012 def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "alpha'-lobe" EXACT [] synonym: "alpha'-lobe of mushroom body" EXACT [] synonym: "delta lobe" RELATED [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005407 ! mushroom body vertical lobe (Drosophila) [Term] id: FBbt:00003693 name: mushroom body beta-lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00045017 def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "beta-lobe" EXACT [] synonym: "beta-lobe of mushroom body" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005408 ! mushroom body medial lobe (Drosophila) [Term] id: FBbt:00003694 name: mushroom body beta'-lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00045016 def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "beta'-lobe" EXACT [] synonym: "beta'-lobe of mushroom body" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005408 ! mushroom body medial lobe (Drosophila) [Term] id: FBbt:00003695 name: mushroom body gamma-lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00045015 def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "gamma L" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "gamma-lobe" RELATED [] synonym: "gamma-lobe of mushroom body" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005408 ! mushroom body medial lobe (Drosophila) [Term] id: FBbt:00003697 name: pons cerebralis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003698 name: optic glomerulus (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040032 subset: cur ! cur synonym: "optic focus" EXACT [FBC:BrainName] is_a: UBERON:0001047 ! neural glomerulus relationship: part_of FBbt:00045021 ! ventrolateral neuropils (Drosophila) [Term] id: FBbt:00003699 name: ocellar nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve connecting the ocelli to the midbrain, where it enters the `superior posterior slope` (FBbt:00045040)." [FBC:BrainName, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html] subset: cur ! cur synonym: "OCN" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "ocellar nerve bundle" RELATED [] synonym: "ocellar pedicle" RELATED [] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00003700 name: adult pars intercerebralis (Drosophila) namespace: fly_anatomy.ontology comment: See general definition for pars intercerebralis. Can general and adult terms be merged? subset: cur ! cur is_a: UBERON:0001059 ! pars intercerebralis relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00003702 name: optic lobe neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that has synaptic terminals in some optic lobe (FBbt:00003701)." [FBC:auto_generated_definition, FlyBase:FBrf0049410, FlyBase:FBrf0064800] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00003703 name: optic lobe pioneer neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron located in the distal region of the optic lobe (Tix et al., 1989), which persists through development and pioneers Bolwig's nerve. In the developing optic lobe, this group of three neurons are fully differentiated before there is any detectable fiber growth in the rest of the optic lobe. Following this, other neuron projections from the optic lobe follow the same path as these pioneers and fasciculate to form Bolwig's nerve (Tix et al., 1989)." [FlyBase:FBrf0049574] comment: Tix et al., (1989) state that in 57 out of 62 third instar larval brain samples only three optic pioneer neurons were observed. However, they found three brains showing four of these neurons, and two cases displaying only two. subset: cur ! cur synonym: "OLP" RELATED [] is_a: CL:0000116 ! pioneer neuron is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) [Term] id: FBbt:00003704 name: optic lobe pioneer neuron 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "OLP1" RELATED [] is_a: FBbt:00003703 ! optic lobe pioneer neuron (Drosophila) [Term] id: FBbt:00003705 name: optic lobe pioneer neuron 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "OLP2" RELATED [] is_a: FBbt:00003703 ! optic lobe pioneer neuron (Drosophila) [Term] id: FBbt:00003706 name: optic lobe pioneer neuron 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "OLP3" RELATED [] is_a: FBbt:00003703 ! optic lobe pioneer neuron (Drosophila) [Term] id: FBbt:00003707 name: optic neuropil namespace: fly_anatomy.ontology def: "Any synaptic neuropil domain that is part of the optic lobe." [FBC:DOS] is_obsolete: true consider: FBbt:00003701 ! optic lobe comment: Obsoleted as part of the adoption of the BrainName standard. We don't have any other terms for classifiying neuropils by partonomy. It is not much used in curation, and where it has been used, optic lobe would have sufficed. subset: cur ! cur [Term] id: FBbt:00003708 name: lamina (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most synaptic neuropil domain of the optic lobes, lying just beneath the compound eyes. It is composed of an array of repetitive cartridge-like units, each of which receives axons from specific sets of ommatidia in the compound eyes." [FBC:BrainName, VFB_vol:00003708, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "LA" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "La" RELATED [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00003718 name: lamina monopolar neuron (Drosophila) namespace: fly_anatomy.ontology def: "A monopolar, intrinsic columnar neuron whose cell body lies in the cortex of the lamina and that has a single major projection that projects along a single lamina optic cartridge, crosses the first optic chiasm and terminates in the equivalent column of the medulla." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "monopolar laminar cell" EXACT [] is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003719 name: lamina monopolar neuron L1 (Drosophila) namespace: fly_anatomy.ontology def: "A lamina monopolar neuron with short collaterals that project radially from the main projection in the lamina (Fischbach and Dittrich, 1989). These short collaterals are postsynaptic to the terminals of photoreceptors R1-6 (Meinertzhagen and O'Neil, 1991). It arborizes in medulla layers M1 and M5. In the medulla, it receives synaptic input from photoreceptor R8 (in M1), makes reciprocal synaptic connections with monopolar lamina cell L5 and centrifugal neuron C2, and makes presynaptic contacts with centrifugal neuron C3 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0054529, FlyBase:FBrf0205531] comment: Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). subset: cur ! cur synonym: "L1" RELATED [FlyBrain_NDB:10089] synonym: "monopolar laminar cell L1" EXACT [] xref: FlyBrain_NDB:10089 is_a: FBbt:00003718 ! lamina monopolar neuron (Drosophila) [Term] id: FBbt:00003720 name: lamina monopolar neuron L2 (Drosophila) namespace: fly_anatomy.ontology def: "A lamina monopolar neuron with short collaterals that project radially from the main projection in the lamina and that arborizes in medulla layer M2. In the lamina it forms presynaptic connections with R1-6 and reciprocal synaptic connections with lamina monopolar neurons L4 from the same column and from L4 collaterals extending from adjacent columns (Meinertzhagen and O'Neil, 1991). It has both pre and post synaptic connections in medulla layer M2, with synaptic input coming from centrifugal neurons C2 and C3 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0054529] comment: Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). subset: cur ! cur synonym: "L2" EXACT [FlyBrain_NDB:10090] synonym: "monopolar laminar cell L2" EXACT [] xref: FlyBrain_NDB:10090 is_a: FBbt:00003718 ! lamina monopolar neuron (Drosophila) [Term] id: FBbt:00003721 name: monopolar laminar cell L3 (Drosophila) namespace: fly_anatomy.ontology def: "A lamina monopolar neuron with short spines that project to one side of the main projection as it extends through the lamina optic cartridge. It terminates with an arborization in medulla layer M3. In the lamina it is postsynaptic to R1-6 (Meinertzhagen and O'Neil, 1991). It forms presynaptic terminals at its terminal arborization in medulla layer M3 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0054529] comment: Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). subset: cur ! cur synonym: "L3" EXACT [FlyBrain_NDB:10091] synonym: "monopolar laminar cell L3" EXACT [] xref: FlyBrain_NDB:10091 is_a: FBbt:00003718 ! lamina monopolar neuron (Drosophila) [Term] id: FBbt:00003722 name: lamina monopolar neuron L4 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003723 alt_id: FBbt:00003724 def: "A lamina monopolar neuron that arborizes in the proximal lamina, forms a spreading arbor in medulla layer M2 and a small terminal arbor in M5 that penetrates adjacent columns (Fischbach and Dittrich, 1989; Takemura et al., 2008). In the proximal lamina it receives synaptic input from outer photoreceptor (R1-6) axons and forms reciprocal synapses with lamina monopolar neuron L2 within the same column and, via collaterals, with L2s in adjacent columns (Meinertzhagen and O'Neil, 1991). In the medulla it has presynaptic terminals in both M2 and M5 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0054529] comment: Note, Fischbach and Dittrich (1989) have this as arborizing in M4, but we follow the more detailed analysis of Takemura and colleagues (2008) who place the terminal arbor in M5. This difference may have to do with the different ways the two papers define L4. Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Note also that L4x and L4y are simply a way of referring to L4 collaterals from an adjacent cartridge in descriptions of synaptic connectivity (see Meinertzhagen and O'Neil, 1991) and so should not be treated as separate neurons, as they previously have been in this ontology. subset: cur ! cur synonym: "L4" EXACT [FlyBrain_NDB:10092] synonym: "monopolar laminar cell L4" EXACT [] synonym: "monopolar laminar cell L4x" EXACT [FlyBase:FBrf0054529] synonym: "monopolar laminar cell L4y" EXACT [FlyBase:FBrf0054529] xref: FlyBrain_NDB:10092 is_a: FBbt:00003718 ! lamina monopolar neuron (Drosophila) [Term] id: FBbt:00003725 name: lamina monopolar neuron L5 (Drosophila) namespace: fly_anatomy.ontology def: "A lamina monopolar neuron that hardly arborizes at all in the lamina, but forms a branched arborization in medulla layers M1 and M2 and a clump of terminals in M5. In the lamina it forms only a few postsynaptic connections (Meinertzhagen and O'Neil, 1991). In the medulla, it forms reciprocal synaptic connections with monopolar lamina neuron L1 in M1 and L5 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0054529, FlyBase:FBrf0205531] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "L5" RELATED [FlyBrain_NDB:10093] synonym: "monopolar laminar cell L5" EXACT [] xref: FlyBrain_NDB:10093 is_a: FBbt:00003718 ! lamina monopolar neuron (Drosophila) [Term] id: FBbt:00003726 name: T neuron (Drosophila) namespace: fly_anatomy.ontology def: "An intrinsic columnar neuron of the optic lobe that has a cell body in the cortex of the lobula plate and that bifurcates in the second optic chiasm with the two branches innervating either the lobula plate and the lobula or the medulla and the lobula." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "T" RELATED [] is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003727 name: columnar neuron T1 (Drosophila) namespace: fly_anatomy.ontology def: "An intrinsic columnar neuron whose cell body lies in the cortex of the medulla. The fiber of the T1 cell body branches at the medulla surface to form a T-shaped linking fiber between a bush-like arborization in the distal part of a medulla column (M1 and M2), and a bundle of climbing fibers in the equivalent column of the lamina (Fischbach and Dittrich, 1989). Synaptic connections in the lamina are exclusively postsynaptic (Meinertzhagen and O'Neil, 1991) and include connections to amacrine neurons. In the medulla, it also forms exclusively postsynaptic connections, including synaptic from centrifugal neuron C3 in medulla layer M2 (Takemura et al., 2008). Oddly, no output synapses have been found." [FlyBase:FBrf0049410, FlyBase:FBrf0054529, FlyBase:FBrf0205531] comment: Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). subset: cur ! cur synonym: "T neuron T1" EXACT [] synonym: "T1" EXACT [FlyBrain_NDB:10115] xref: FlyBrain_NDB:10115 is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003728 name: T neuron T2 (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose cell body fiber soma sits in the cortex adjacent to the gap between the medulla and lobula plate. Their cell body fibers project through this gap before branching in the second optic chiasm. One branch projects into a medulla column, where it forms a bushy, fine, arborization in medulla layer M9 and then projects through the rest of the medulla column, forming fine arborizations in M5 and M1 and 2. The other branch forms a terminal arborization in lobula layer 3 that is much wider than a single column and has bleb-type terminal branches." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T2" RELATED [FlyBrain_NDB:10116] xref: FlyBrain_NDB:10116 is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003729 name: T neuron T2a (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose soma sits in the cortex adjacent to the gap between the medulla and lobula plate. Its cell body fibers project through this gap before branching in the second optic chiasm. One branch projects into a medulla column, where it forms a bushy, fine, arborization in medulla layer M9 and then projects through the rest of the medulla column, bifurcating in medulla layer M5 and forming fine arbors throughout layers M1-4. The other branch forms a terminal arborization in lobula layer 3 that is much wider than a single column and has bleb-type terminal branches." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T2a" RELATED [FlyBrain_NDB:10117] xref: FlyBrain_NDB:10117 is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003730 name: T neuron T3 (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose soma sits in the cortex adjacent to the gap between the medulla and lobula plate. Its cell body fiber project through this gap before branching in the second optic chiasm, with one branch forming a bushy, fine, terminal arborization in medulla layer M9 and the other forming a terminal arborization in lobula layers 2 and 3 with mix of bleb-type and fine terminal branches." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T3" RELATED [FlyBrain_NDB:10183] xref: FlyBrain_NDB:10183 is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003731 name: T neuron T4 (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate." [FlyBase:FBrf0049410] subset: cur ! cur is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003732 name: T neuron T4a (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 1." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T4a" RELATED [FlyBrain_NDB:10118] xref: FlyBrain_NDB:10118 is_a: FBbt:00003731 ! T neuron T4 (Drosophila) [Term] id: FBbt:00003733 name: T neuron T4b (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 2." [FlyBase:FBrf0049410] subset: cur ! cur is_a: FBbt:00003731 ! T neuron T4 (Drosophila) [Term] id: FBbt:00003734 name: T neuron T4c (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T4c" RELATED [FlyBrain_NDB:10119] xref: FlyBrain_NDB:10119 is_a: FBbt:00003731 ! T neuron T4 (Drosophila) [Term] id: FBbt:00003735 name: T neuron T4d (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in medulla layer M9 and M10 and the other branch doubling back to form bleb-type arborizations in the lobula plate layer 4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T4d" RELATED [FlyBrain_NDB:10120] xref: FlyBrain_NDB:10120 is_a: FBbt:00003731 ! T neuron T4 (Drosophila) [Term] id: FBbt:00003736 name: T neuron T5 (Drosophila) namespace: fly_anatomy.ontology def: "T neuron whose cell body fiber projects through the lobula plate with little or no arborization before bifurcating in the second optic chiasm with one branch forming a fine terminal arborization in lobula layer 1 and the other doubling back to form bleb-type arborizations in the lobula plate." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003737 name: T neuron T5a (Drosophila) namespace: fly_anatomy.ontology def: "T neuron T5 with a largely bleb-type terminal arborization in lobula plate layer 1." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T5a" RELATED [FlyBrain_NDB:10121] xref: FlyBrain_NDB:10121 is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003738 name: T neuron T5b (Drosophila) namespace: fly_anatomy.ontology def: "T neuron T5 with a largely bleb-type terminal arborization in lobula plate layer 2." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T5b" RELATED [FlyBrain_NDB:10122] xref: FlyBrain_NDB:10122 is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003739 name: T neuron T5c (Drosophila) namespace: fly_anatomy.ontology def: "T neuron T5 with a bleb-type terminal arborization in lobula plate layer 3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T5c" RELATED [FlyBrain_NDB:10123] xref: FlyBrain_NDB:10123 is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003740 name: T neuron T5d (Drosophila) namespace: fly_anatomy.ontology def: "T neuron T5 with a largely bleb-type terminal arborization in lobula plate layer 4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "T5d" RELATED [FlyBrain_NDB:10124] xref: FlyBrain_NDB:10124 is_a: FBbt:00003726 ! T neuron (Drosophila) [Term] id: FBbt:00003741 name: lamina wide-field cell (Drosophila) namespace: fly_anatomy.ontology def: "An intrinsic columnar neuron of the visual system whose cell body is located in the medulla cortex and that has a main projection that ascends via the first optic chiasm into the lamina where it is restricted to a single column for most of its length before making wide-field arborizations in the distal lamina. These neurons also arborize on the distal surface of the medulla in a circular field of about 20 columns. Several linking fibers from this arborization descend into M3 where they form a wide arborization field covering about 30-40 columns." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Lawf" RELATED [FlyBrain_NDB:10094] synonym: "Lawf1" RELATED [] xref: FlyBrain_NDB:10094 is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) [Term] id: FBbt:00003742 name: centrifugal neuron (Drosophila) namespace: fly_anatomy.ontology def: "Columnar neuron whose soma lies in the cortex between the medulla and the lobula plate that extends through a single column of the medulla and lamina." [FlyBase:FBrf0049410] subset: cur ! cur is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003743 name: centrifugal neuron C2 (Drosophila) namespace: fly_anatomy.ontology def: "A centrifugal neuron with wide field arborizations in the medulla layers M1, M5, M8 and M10 and more restricted arborizations in the lamina (Fischbach and Dittrich, 1989). In the lamina it is presynaptic to lamina monopolar neurons (Meinertzhagen and O'Neil, 1991). In the medulla, it is presynaptic to monopolar lamina neuron L2 and makes reciprocal synaptic connections with L1 in M1 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0054529, FlyBase:FBrf0205531] comment: Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the distal medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Pre- versus postsynaptic innervation in the proximal medulla was inferred by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "C2" RELATED [FlyBrain_NDB:10079] xref: FlyBrain_NDB:10079 is_a: FBbt:00003742 ! centrifugal neuron (Drosophila) [Term] id: FBbt:00003744 name: centrifugal neuron C3 (Drosophila) namespace: fly_anatomy.ontology def: "A centrifugal neuron with wide field arborizations in the medulla layers M1-2, M5, and M8-10 and more restricted arborizations in the lamina (Fischbach and Dittrich, 1989). In the lamina it is presynaptic to lamina monopolar neurons. In the medulla it is presynaptic to monopolar lamina neuron L2 and to T1, and postsynaptic to L1." [FlyBase:FBrf0049410] comment: Connectivity in the lamina is extrapolated from serial EM of a single column (Meinertzhagen and O'Neil, 1991). Connectivity in the distal medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008). Pre- versus postsynaptic innervation in the proximal medulla was inferred by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "C3" RELATED [FlyBrain_NDB:10080] xref: FlyBrain_NDB:10080 is_a: FBbt:00003742 ! centrifugal neuron (Drosophila) [Term] id: FBbt:00003745 name: lamina tangential neuron (Drosophila) namespace: fly_anatomy.ontology def: "Tangential neuron of the optic lobe that projects and arborizes along the plane of one or more layers of the lamina." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Lat" RELATED [] is_a: FBbt:00007579 ! tangential neuron (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) [Term] id: FBbt:00003746 name: lamina intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Intrinsic neuron of the lamina." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Lai" RELATED [] synonym: "amacrine cell" BROAD [FlyBase:FBrf0049410] is_a: FBbt:00003745 ! lamina tangential neuron (Drosophila) [Term] id: FBbt:00003747 name: optic cartridge (Drosophila) namespace: fly_anatomy.ontology def: "Segment (column) of the lamina defined by the distal-proximal (eye to central brain) projections of photoreceptor cells of a single ommatidium." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "cartridge" RELATED [] synonym: "lamina cartridge" RELATED [] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) [Term] id: FBbt:00003748 name: medulla (Drosophila) namespace: fly_anatomy.ontology def: "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: Layers 1-6 make up the outer medulla, and the seventh (or serpentine) layer exhibits a distinct architecture. Proximal to this, layers 8-10 make up the inner medulla." [FBC:BrainName, VFB_vol:00003748, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "ME" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "m" RELATED [] synonym: "optic medulla" EXACT [FlyBase:FBrf0212889] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00003749 name: outer medulla (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040025 def: "Layers 1-6 of the medulla." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: cur ! cur is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00045001 ! plexiform medulla (Drosophila) [Term] id: FBbt:00003750 name: medulla layer M1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040026 def: "Distal-most layer of the medulla. It is defined by the distal extent of the distal lamina monopolar neuron L1 arborization (Fischbach and Dittrich, 1989)." [FBC:BrainName, FlyBase:FBrf0049410, FlyBase:FBrf0205531] comment: In the literature there are two methods for describing spatial location of neurons in the visual system: distal-proximal (e.g. Fischbach and Dittrich, 1989), and medial-lateral (e.g. BrainName), both meaning outer and inner, and refer to the distance of a structure along the visual pathway relative to the center of the brain. Currently we will adopt the classical 'distal-proximal'. subset: cur ! cur synonym: "stratum M1" EXACT [FlyBase:FBrf0205531] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003749 ! outer medulla (Drosophila) [Term] id: FBbt:00003751 name: medulla layer M2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040027 def: "Second most lateral layer of the medulla. It is defined by the distal extent of the distal lamina monopolar neuron L2 arborization (Fischbach and Dittrich, 1989)." [FBC:BrainName, FlyBase:FBrf0049410, FlyBase:FBrf0205531] comment: In the literature there are two methods for describing spatial location of neurons in the visual system: distal-proximal (e.g. Fischbach and Dittrich, 1989), and medial-lateral (e.g. BrainName), both meaning outer and inner, and refer to the distance of a structure along the visual pathway relative to the center of the brain. Currently we will adopt the classical 'distal-proximal'. subset: cur ! cur synonym: "L2 layer" EXACT [FlyBase:FBrf0049410] synonym: "layer M2" EXACT [FlyBase:FBrf0049410] synonym: "medulla layer 2" EXACT [] synonym: "stratum M2" EXACT [FlyBase:FBrf0205531] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003749 ! outer medulla (Drosophila) [Term] id: FBbt:00003752 name: medulla layer M3 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040028 def: "Third most lateral layer of the medulla. It is defined by the proximal border of the lamina monopolar neuron L2 arborization to that of the lamina neuron L3 terminal (Fischbach and Dittrich, 1989)." [FBC:BrainName, FlyBase:FBrf0049410, FlyBase:FBrf0205531] comment: In the literature there are two methods for describing spatial location of neurons in the visual system: distal-proximal (e.g. Fischbach and Dittrich, 1989), and medial-lateral (e.g. BrainName), both meaning outer and inner, and refer to the distance of a structure along the visual pathway relative to the center of the brain. Currently we will adopt the classical 'distal-proximal'. subset: cur ! cur synonym: "L3 layer" EXACT [FlyBase:FBrf0049410] synonym: "medulla layer 3" EXACT [] synonym: "stratum M3" EXACT [FlyBase:FBrf0205531] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003749 ! outer medulla (Drosophila) [Term] id: FBbt:00003753 name: medulla layer M4 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040029 def: "Fourth most lateral layer of the medulla. It corresponds to the narrow layer between the proximal end of lamina neuron L3 and the distal border of lamina neuron L1's proximal arborization (Takemura et al., 2008)." [FBC:BrainName, FlyBase:FBrf0049410, FlyBase:FBrf0205531] comment: In the literature there are two methods for describing spatial location of neurons in the visual system: distal-proximal (e.g. Fischbach and Dittrich, 1989), and medial-lateral (e.g. BrainName), both meaning outer and inner, and refer to the distance of a structure along the visual pathway relative to the center of the brain. We use the classical 'distal-proximal'. subset: cur ! cur synonym: "L4 layer" EXACT [FlyBase:FBrf0049410] synonym: "medulla layer 4" EXACT [] synonym: "stratum M4" EXACT [FlyBase:FBrf0205531] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003749 ! outer medulla (Drosophila) [Term] id: FBbt:00003754 name: medulla layer M5 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040030 def: "Fifth most lateral layer of the medulla. It is defined by the lamina neuron L1's proximal arborization and contains the proximal lamina neuron L5 terminal (Fischbach and Dittrich, 1989)." [FBC:BrainName, FlyBase:FBrf0049410, FlyBase:FBrf0205531] comment: In the literature there are two methods for describing spatial location of neurons in the visual system: distal-proximal (e.g. Fischbach and Dittrich, 1989), and medial-lateral (e.g. BrainName), both meaning outer and inner, and refer to the distance of a structure along the visual pathway relative to the center of the brain. Currently we will adopt the classical 'distal-proximal'. subset: cur ! cur synonym: "medulla layer 5" EXACT [] synonym: "proximal L1 layer" EXACT [FlyBase:FBrf0049410] synonym: "stratum M5" EXACT [FlyBase:FBrf0205531] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003749 ! outer medulla (Drosophila) [Term] id: FBbt:00003755 name: medulla layer M6 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040031 def: "Sixth most lateral layer of the medulla, immediately lateral to the serpentine layer. It lies between the lamina neuron L1's arborization and the serpentine layer (Fischbach and Dittrich, 1989)." [FBC:BrainName, FlyBase:FBrf0049410, FlyBase:FBrf0205531] comment: In the literature there are two methods for describing spatial location of neurons in the visual system: distal-proximal (e.g. Fischbach and Dittrich, 1989), and medial-lateral (e.g. BrainName), both meaning outer and inner, and refer to the distance of a structure along the visual pathway relative to the center of the brain. Currently we will adopt the classical 'distal-proximal'. subset: cur ! cur synonym: "R7 layer" EXACT [FlyBase:FBrf0049410] synonym: "R7 recipient layer" RELATED [FlyBase:FBrf0209317] synonym: "medulla layer 6" EXACT [] synonym: "stratum M6" EXACT [FlyBase:FBrf0205531] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003749 ! outer medulla (Drosophila) [Term] id: FBbt:00003756 name: serpentine layer (Drosophila) namespace: fly_anatomy.ontology def: "A major layer of extensive tangential fibers in the medulla, many of which project via the posterior optic commissure to the opposite medulla. It is the 7th most lateral layer of the medulla." [FBC:BrainName, FlyBase:FBrf0049410, FlyBase:FBrf0065419] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "SPL" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "medulla layer 7" EXACT [] synonym: "medulla layer M7" RELATED [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003748 ! medulla (Drosophila) [Term] id: FBbt:00003757 name: inner medulla (Drosophila) namespace: fly_anatomy.ontology def: "Layers 8-10 of the medulla." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "MEI" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003748 ! medulla (Drosophila) [Term] id: FBbt:00003758 name: medulla layer M8 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040022 def: "Lateral-most layer of the inner medulla, immediately medial to the serpentine layer." [FBC:BrainName] subset: cur ! cur synonym: "medulla layer 8" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003757 ! inner medulla (Drosophila) [Term] id: FBbt:00003759 name: medulla layer M9 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040023 def: "Middle layer of the inner medulla." [FBC:BrainName] subset: cur ! cur synonym: "medulla layer 9" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003757 ! inner medulla (Drosophila) [Term] id: FBbt:00003760 name: medulla layer M10 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040024 def: "Inner-most layer of the medulla. Practically it is defined by the height of the T4 neuron terminal arborizations." [FBC:BrainName] subset: cur ! cur synonym: "T4 layer" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003757 ! inner medulla (Drosophila) [Term] id: FBbt:00003761 name: Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron that expresses Pigment-dispersing factor, Pdf (FBgn0023178)." [FlyBase:FBrf0093121] subset: cur ! cur synonym: "PDF" RELATED [FlyBase:FBrf0093121] synonym: "Pdh neuron" RELATED [] synonym: "pigment-dispersing hormone-immunoreactive neuron" EXACT [FlyBase:FBrf0093121] is_a: CL:0000381 ! neurosecretory neuron [Term] id: FBbt:00003762 name: LN Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Lateral period-expressing neuron (LN) that also expresses Pdf (FBgn0023178)." [FlyBase:FBrf0093121] synonym: "PDFMe" EXACT [FlyBase:FBrf0093121] synonym: "PDH neuron" EXACT [FlyBrain_NDB:10053] synonym: "pigment-dispersing hormone-immunoreactive neuron close to medulla" EXACT [FlyBase:FBrf0093121] xref: FlyBrain_NDB:10053 is_a: FBbt:00004044 ! LN period neuron (Drosophila) is_a: FBbt:00100171 ! adult Pdf neuron (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003763 name: l-LNv neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of the period-expressing LNv cluster, with a large cell body and generally located more dorsally than the s-LNv neurons (Helfrich-Forster, 1998). There are 5 cells present in each cluster, all of which express Pdf (FBgn0023178). These neurons send dendrites through the posterior optic commissure to the contralateral optic lobe, where a few short fibers terminate in the accessory medulla, but most arborize extensively in the medulla itself (Helfrich-Forster, 2005; Helfrich-Forster et al., 2007). These arborizations in the medulla are associated with varicosities. These cells also project to the ipsilateral (adjacent) accessory medulla and its ventral extension, where they arborize extensively." [FlyBase:FBrf0101921, FlyBase:FBrf0134807, FlyBase:FBrf0151380, FlyBase:FBrf0183981, FlyBase:FBrf0193849] comment: While l-LNv neurons fit the definition of pacemaker neurons based on molecular oscillation of Period (FBgn0003068) and Timeless (FBgn0014396) expression, they do not sustain this molecular oscillation when kept in constant darkness (Yang and Sehgal, 2001; Shafer et al., 2002). Synaptobrevin localization supports the assertion that projections through the posterior optic commissure to the contralateral optic lobe are dendritic (Helfrich-Forster et al., 2007). synonym: "l-LNv" EXACT [] synonym: "l-vLN" EXACT [FlyBase:FBrf0209505] synonym: "lLNv" EXACT [] synonym: "large LNv" EXACT [] synonym: "large pigment-dispersing hormone-immunoreactive neuron close to medulla" EXACT [] is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) is_a: FBbt:00003762 ! LN Pdf neuron (Drosophila) [Term] id: FBbt:00003764 name: s-LNv Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "s-LNv that expresses Pdf (FBgn0023178). There are four of these in each ventral cluster of LNs. Short, fine fibers lacking presynaptic sites contact the accessory medulla, whilst longer processes project toward the dorsal protocerebrum and terminate dorsofrontal to the mushroom body calyx, close to the DN2 neurons (Helfrich-Forster et al., 2007) where they form both pre- and postsynaptic connections (Yasuyama and Meinertzhagen, 2010). Pdf rich dense-synaptic vesicles accumulate in terminal varicosities in these cells, but are not associated with presynaptic sites (Miskiewicz et al., 2004; Yasuyama and Meinertzhagen, 2010). They can be observed docked at the plasma membrane, suggesting paracrine release of Pdf." [FlyBase:FBrf0179342, FlyBase:FBrf0191052, FlyBase:FBrf0193849, FlyBase:FBrf0209462] comment: Dorsal projections judged by curator to terminate in the superior lateral protocerebrum (BrainName SLP) as defined by the BrainName standard. The presence of presynaptic sites was determined by localization of a neuronal synaptobrevin-GFP fusion (Helfrich-Forster et al., 2007) and by electron-microscopy (Yasuyama and Meinertzhagen, 2010). subset: cur ! cur synonym: "sLNv PDF" EXACT [] synonym: "small Pdf neuron" RELATED [] synonym: "small pigment-dispersing hormone-immunoreactive neuron close to medulla" EXACT [] is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) is_a: FBbt:00003762 ! LN Pdf neuron (Drosophila) is_a: FBbt:00007428 ! s-LNv neuron (Drosophila) relationship: develops_from FBbt:00100167 ! larval s-LNv Pdf neuron (Drosophila) [Term] id: FBbt:00003765 name: Pdf neuron close to calyx (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0065419] subset: cur ! cur synonym: "PDFCa" RELATED [] synonym: "pigment-dispersing hormone-immunoreactive neuron close to calyx" RELATED [] is_a: FBbt:00100171 ! adult Pdf neuron (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003766 name: Pdf neuron close to tritocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Neuron located anteroventrally to the tritocerebrum that expresses Pdf (FBgn0023178) strongly until 24hrs after eclosion, after which Pdf immunoreactivity in the soma disappears. Within 2-4 days post-eclosion, Pdf immunoreactivity is also lost from the arborizations." [FlyBase:FBrf0093121] subset: cur ! cur synonym: "PDFTri" RELATED [] synonym: "pigment-dispersing hormone-immunoreactive neuron close to tritocerebrum" RELATED [] is_a: FBbt:00100171 ! adult Pdf neuron (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00003767 name: distal medullary amacrine neuron (Drosophila) namespace: fly_anatomy.ontology def: "An amacrine neuron that is intrinsic to the medulla, whose soma is located in the cortex of the medulla and that branches and arborizes in the distal medulla. These neurons project through the distal surface of the medulla, to form wide (sometimes very wide) terminal arborizations mainly or completely restricted to a single layer of the medulla." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Dm" RELATED [] is_a: CL:0000561 ! amacrine cell relationship: part_of FBbt:00003748 ! medulla (Drosophila) [Term] id: FBbt:00003768 name: distal medullary amacrine neuron Dm1 (Drosophila) namespace: fly_anatomy.ontology def: "Distal medullary amacrine neuron that branches extensively at the distal surface of the medulla forming a moderately broad arbor with each branch making a distinctive bleb-type terminal in M1 from which short, fine terminal branches project." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Dm1" RELATED [FlyBrain_NDB:10081] xref: FlyBrain_NDB:10081 is_a: FBbt:00003767 ! distal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003769 name: distal medullary amacrine neuron Dm2 (Drosophila) namespace: fly_anatomy.ontology def: "Distal medullary amacrine neuron that terminates with a bushy arbor with mixed terminal morphology in layers M4-6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. Note, this is named by Fischbach and Dittrich as a distal medullary amacrine neuron. but by morphology it looks like it could just as easily be classified as Mi. subset: cur ! cur synonym: "Dm2" RELATED [FlyBrain_NDB:10082] xref: FlyBrain_NDB:10082 is_a: FBbt:00003767 ! distal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003770 name: distal medullary amacrine neuron Dm3 (Drosophila) namespace: fly_anatomy.ontology def: "Distal medullary amacrine neuron that projects asymmetrically along layers M2 and 3 forming mixed morphology arborizations." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Dm3" RELATED [FlyBrain_NDB:10083] xref: FlyBrain_NDB:10083 is_a: FBbt:00003767 ! distal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003771 name: distal medullary amacrine neuron Dm4 (Drosophila) namespace: fly_anatomy.ontology def: "Distal medullary amacrine neuron that projects asymmetrically along layers M5 and 6 forming mixed morphology arborizations. Some collaterals from this projection along M5-6 project back to M4 where they form distinctive terminal blebs." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Dm4" RELATED [FlyBrain_NDB:10084] xref: FlyBrain_NDB:10084 is_a: FBbt:00003767 ! distal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003772 name: distal medullary amacrine neuron Dm5 (Drosophila) namespace: fly_anatomy.ontology def: "Distal medullary amacrine neuron that has a moderately broad, fine terminal arborization in layers M4-6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Dm5" RELATED [FlyBrain_NDB:10085] xref: FlyBrain_NDB:10085 is_a: FBbt:00003767 ! distal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003773 name: distal medullary amacrine neuron Dm6 (Drosophila) namespace: fly_anatomy.ontology def: "Distal medullary amacrine neuron that branches extensively at the distal surface of the medulla forming a broad arbor with each branch making a distinctive bleb-type terminal in M1 from which short, fine terminal branches project." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Dm6" RELATED [FlyBrain_NDB:10086] xref: FlyBrain_NDB:10086 is_a: FBbt:00003767 ! distal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003774 name: distal medullary amacrine neuron Dm7 (Drosophila) namespace: fly_anatomy.ontology def: "Distal medullary amacrine neuron that branches in layer M6. The branches spread along the layer, forming an arbor in M6 with terminals of mixed morphology. Some collaterals from this arbor extend to M4 where they also spread to form an arbor with terminals of mixed morphology." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Dm7" RELATED [FlyBrain_NDB:10087] xref: FlyBrain_NDB:10087 is_a: FBbt:00003767 ! distal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003775 name: medullary intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "A columnar neuron whose cell body lies in the medulla cortex and that is intrinsic to the medulla." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Mi" RELATED [] is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003776 name: medullary intrinsic neuron Mi1 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with bushy, fine arborizations in medulla layers M1 and M5, coinciding with the arborization domains of lamina monopolar neuron M1. The projection of this neuron branches at the inner-face of the medulla to form two to three varicose recurrent terminal specializations that extend back up to the inner border of layer M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi1" EXACT [FlyBrain_NDB:10097] synonym: "Sut" RELATED [] synonym: "medullary intrinsic neuron 1" EXACT [] synonym: "small field unilateral tristratified neuron" RELATED [] xref: FlyBrain_NDB:10097 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003777 name: medullary intrinsic neuron Mi2 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M1, M2 and M3, but with only fine arborizations in medulla layers M4, M5, M8 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi2" EXACT [FlyBrain_NDB:10101] xref: FlyBrain_NDB:10101 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003778 name: medullary intrinsic neuron Mi3 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M3, M6 and M8, but with only fine arborizations in medulla layer M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi3" RELATED [FlyBrain_NDB:10102] xref: FlyBrain_NDB:10102 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003779 name: medullary intrinsic neuron Mi4 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M1, M2, M3 and M8, but with only fine arborizations in medulla layers M4 and M5, and only bleb-type arborizations in medulla layer M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi4" RELATED [FlyBrain_NDB:10103] xref: FlyBrain_NDB:10103 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003780 name: medullary intrinsic neuron Mi5 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layer M8 and the serpentine layer, but with only fine arborizations in medulla layer M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi5" RELATED [FlyBrain_NDB:10104] xref: FlyBrain_NDB:10104 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003781 name: medullary intrinsic neuron Mi6 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M2, M5, M6 and M8, but with only fine arborizations in medulla layers M3 and M4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi6" RELATED [FlyBrain_NDB:10105] xref: FlyBrain_NDB:10105 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003782 name: medullary intrinsic neuron Mi7 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layer M6, but with only fine arborizations in medulla layers M1, M3, M5 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi7" RELATED [FlyBrain_NDB:10106] xref: FlyBrain_NDB:10106 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003783 name: medullary intrinsic neuron Mi8 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with a bushy mix of bleb-type and fine terminal arborization in layers M2-4. The projection of this neuron branches at the boundary with M10 to form varicose recurrent terminal specializations that extend back through M9 up to the inner border of layer M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi8" RELATED [FlyBrain_NDB:10107] xref: FlyBrain_NDB:10107 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003784 name: medullary intrinsic neuron Mi9 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with a bushy mix of bleb-type and fine terminal arborization in layers M2, M3 and M4. The projection of this neuron branches at the inner-face of the medulla to form varicose recurrent terminal specializations that extend back up to the inner border of layer M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi9" RELATED [FlyBrain_NDB:10108] xref: FlyBrain_NDB:10108 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003785 name: medullary intrinsic neuron Mi10 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with both fine and bleb-type arborizations in medulla layers M3, M4, M5 and M8, but with only fine arborizations in medulla layer M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi10" RELATED [FlyBrain_NDB:10098] xref: FlyBrain_NDB:10098 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003786 name: medullary intrinsic neuron Mi11 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with extensive fine arborizations in medulla layers M6, M8, M9, M10 and the serpentine layer." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi11" RELATED [FlyBrain_NDB:10099] xref: FlyBrain_NDB:10099 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003787 name: medullary intrinsic neuron Mi12 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary intrinsic neuron with fine, extensive and bushy arborizations in medulla layers M2, M8 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mi12" RELATED [FlyBrain_NDB:10100] xref: FlyBrain_NDB:10100 is_a: FBbt:00003775 ! medullary intrinsic neuron (Drosophila) [Term] id: FBbt:00003788 name: transmedullary neuron (Drosophila) namespace: fly_anatomy.ontology def: "An intrinsic columnar neuron of the optic lobe whose cell body lies in the distal cortex of the medulla and that projects through the medulla and optic chiasm and into the lobula. All arborize in the lobula and most, but not all, in the medulla." [FlyBase:FBrf0049410] subset: cur ! cur is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003789 name: transmedullary neuron Tm1 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 1 with a bleb-type terminal arborization and that has fine arborizations in medulla layer M2 and bleb-type arborizations in M3 and M9. Their arborization pattern in the medulla overlaps with that of lamina monopolar neurons L2 and L3, but not that of L1." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm1" RELATED [FlyBrain_NDB:10132] xref: FlyBrain_NDB:10132 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003790 name: transmedullary neuron Tm2 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates with bleb-type terminal arborizations in lobula layers 2 and 3. It displays fine arborizations in medulla layer M2 and M3, and has bleb-like arborizations in layers M3, M4 and M9 (Fischbach and Dittrich, 1989)." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm2" RELATED [FlyBrain_NDB:10144] xref: FlyBrain_NDB:10144 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003791 name: transmedullary neuron Tm3 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 with bleb-like terminal arborizations. It has fine arborizations in medulla layers M1, M4, and M5, and has bleb-type arborization in medulla layers M1, M4, M9 and M10." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm3" RELATED [FlyBrain_NDB:10153] xref: FlyBrain_NDB:10153 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003792 name: transmedullary neuron Tm4 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 1, 2 and 4 with bleb-type arborizations, and with fine arborizations in layer 3. It displays fine arborizations in medulla layers M2, M3, M4 and M9, and has bleb-type arborizations in layers M2, M4, and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm4" RELATED [FlyBrain_NDB:10155] xref: FlyBrain_NDB:10155 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003793 name: transmedullary neuron Tm5 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 4 and 5 with bleb-type arborizations. It displays fine arborizations in medulla layers M3, M4, M5, M6, M8 and the serpentine layer, and has bleb-type terminals in layers M6 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm5" RELATED [FlyBrain_NDB:10157] xref: FlyBrain_NDB:10157 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003794 name: transmedullary neuron Tm6 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 with bleb-type arborizations. It displays fine arborizations in medulla layers M1, M2, M3, M8 and M9, and has bleb-type arborizations in layers M1, M2, M8 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm6" RELATED [FlyBrain_NDB:10160] xref: FlyBrain_NDB:10160 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003795 name: transmedullary neuron Tm7 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 5 with both fine and bleb-type arborizations. It has fine arborizations in medulla layers M3, M4, M6 and M8, and bleb-type arborizations in layer M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm7" RELATED [FlyBrain_NDB:10161] xref: FlyBrain_NDB:10161 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003796 name: transmedullary neuron Tm8 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 5 and 6 with bleb-type arborizations. It displays fine arborizations in medulla layers M4, M6, M8 and M9, and has bleb-type arborizations in layers M4 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm8" RELATED [FlyBrain_NDB:10162] xref: FlyBrain_NDB:10162 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003797 name: transmedullary neuron Tm9 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 with bleb-type arborizations. It displays fine arborizations in medulla layers M2 and M3, and has bleb-type arborizations in layers M3 and M4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm9" RELATED [FlyBrain_NDB:10163] xref: FlyBrain_NDB:10163 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003798 name: transmedullary neuron Tm10 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 2, 3 and 4 with both fine and bleb-type arborizations. It displays fine arborizations in medulla layers M1, M3, M6 and M9, and has bleb-type arborizations in layer M1." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm10" RELATED [FlyBrain_NDB:10133] xref: FlyBrain_NDB:10133 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003799 name: transmedullary neuron Tm11 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 5 with both fine and bleb-type arborizations. It displays fine arborizations in medulla layers M6, M8 and M9, and has bleb-type arborizations in layers M6 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm11" RELATED [FlyBrain_NDB:10134] xref: FlyBrain_NDB:10134 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003800 name: transmedullary neuron Tm12 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 3 and 5 with bleb-type arborizations. It displays fine arborizations in medulla layers M1, M2, M3, M4, M5, M6, M8 and M9, and has bleb-type arborizations in layers M6 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm12" RELATED [FlyBrain_NDB:10135] xref: FlyBrain_NDB:10135 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003801 name: transmedullary neuron Tm13 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 with both fine and bleb-type arborizations. It displays fine arborizations in medulla layers M1, M2, M3, M4 and M9, and has bleb-type arborizations in layers M2, M3 and M4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm13" RELATED [FlyBrain_NDB:10136] xref: FlyBrain_NDB:10136 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003802 name: transmedullary neuron Tm14 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 with bleb-type arborizations. It displays fine arborizations in medulla layers M1, M2, M3 and M9, and has bleb-type arborizations in layers M1 and M2." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm14" RELATED [FlyBrain_NDB:10137] xref: FlyBrain_NDB:10137 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003803 name: transmedullary neuron Tm15 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 5 with both fine and bleb-type arborizations. It displays fine arborizations in medulla layers M2, M3, M4, M5 and M10, and has bleb-type arborizations in layers M3 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm15" RELATED [FlyBrain_NDB:10138] xref: FlyBrain_NDB:10138 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003804 name: transmedullary neuron Tm16 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 4, 5 and 6 with fine arborizations, and with bleb-type arborizations in layers 5 and 6. It displays fine arborizations in medulla layers M1, M3, M4, M5, M8 and M9, and has bleb-type arborizations in layers M3, M4, M5, M8 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm16" RELATED [FlyBrain_NDB:10139] xref: FlyBrain_NDB:10139 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003805 name: transmedullary neuron Tm17 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 with both fine and bleb-type arborizations. It displays fine arborizations in medulla layers M1, M3, M8 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm17" RELATED [FlyBrain_NDB:10140] xref: FlyBrain_NDB:10140 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003806 name: transmedullary neuron Tm18 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 bleb-type arborizations. It displays fine arborizations in medulla layers M1, M2m M3, M4 and M9, and has bleb-type arborizations in layers M4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm18" RELATED [FlyBrain_NDB:10141] xref: FlyBrain_NDB:10141 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003807 name: transmedullary neuron Tm19 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 6 with both fine and bleb-type arborizations, and bleb-type arborizations in layers 4 and 5. It displays fine arborizations in medulla layers M2, M3, M8 and M10, and has bleb-type arborizations in layer M3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm19" RELATED [FlyBrain_NDB:10142] xref: FlyBrain_NDB:10142 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003808 name: transmedullary neuron Tm20 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 5 with bleb-type arborizations. It displays fine arborizations in medulla layers M1, M2, M3 and M8, and has bleb-type arborizations in layers M3 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm20" RELATED [FlyBrain_NDB:10145] xref: FlyBrain_NDB:10145 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003809 name: transmedullary neuron Tm21 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 2 and 3 with fine arborizations. It displays fine arborizations in medulla layers M1, M3, M8 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm21" RELATED [FlyBrain_NDB:10146] xref: FlyBrain_NDB:10146 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003810 name: transmedullary neuron Tm22 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 6 fine arborizations, and in lobula layers 4 and 5 with bleb-type arborizations. It displays fine arborizations in medulla layers M4, M6 and M8, and has bleb-type arborizations in layers M6 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm22" RELATED [FlyBrain_NDB:10147] xref: FlyBrain_NDB:10147 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003811 name: transmedullary neuron Tm23 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 1 and 2 with both fine and bleb-type arborizations. It does not show any arborization in the medulla." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm23" RELATED [FlyBrain_NDB:10148] xref: FlyBrain_NDB:10148 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003812 name: transmedullary neuron Tm24 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 4, 5 and 6 with both fine and bleb-type arborizations. It does not show any arborizations in the medulla." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm24" RELATED [FlyBrain_NDB:10149] xref: FlyBrain_NDB:10149 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003813 name: transmedullary neuron Tm25 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 5 with bleb-type arborizations. It displays fine arborizations in medulla layers M1, M2, M3, M4, M5, M6, M9 and M10, and has bleb-type arborizations in layers M5 and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm25" RELATED [FlyBrain_NDB:10150] xref: FlyBrain_NDB:10150 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003814 name: transmedullary neuron Tm26 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 5 with both fine and bleb-type arborizations. It displays fine arborizations in medulla layers M2, M3, M4, M5, M6, the serpentine layer, M8 and M9, and has bleb-type arborizations in layer M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm26" RELATED [FlyBrain_NDB:10151] xref: FlyBrain_NDB:10151 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003815 name: transmedullary neuron Tm27 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003816 name: transmedullary neuron Tm28 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer with bleb-type arborizations. It displays fine arborizations in medulla layers M2 and M3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm28" RELATED [FlyBrain_NDB:10152] xref: FlyBrain_NDB:10152 is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003817 name: transmedullary Y neuron (Drosophila) namespace: fly_anatomy.ontology def: "An intrinsic columnar neuron of the optic lobe whose cell body lies in the distal cortex of the medulla and that arborizes in the medulla and branches in the second optic chiasm with one branch innervating the lobula and the other the lobula plate." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "TmY" RELATED [] is_a: FBbt:00003788 ! transmedullary neuron (Drosophila) [Term] id: FBbt:00003818 name: transmedullary Y neuron TmY1 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates in lobula layers 2 and 4 with bleb-type arborizations, and in lobula plate layers 1 and 4 with fine arborizations. It displays fine arborizations in medulla layers M1, M2, M3, M4, M5, M6, M8, M9 and M10." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY1" RELATED [FlyBrain_NDB:10164] xref: FlyBrain_NDB:10164 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003819 name: transmedullary Y neuron TmY2 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with bleb-type arborizations in lobula layers 3 and 4, and in lobula plate layer 1. It displays both fine and bleb-type arborizations in medulla layers M4, M5, M8, and M9, but has only fine arborizations in medulla layer M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY2" RELATED [FlyBrain_NDB:10170] xref: FlyBrain_NDB:10170 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003820 name: transmedullary Y neuron TmY3 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with bleb-type arborizations in lobula layers 4 and lobula plate layer 4. It displays fine arborizations in medulla layers M1, M2, M4, M5, M6, M8, and M10, and has bleb-type arborizations in medulla layers M5 and M10." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY3" RELATED [FlyBrain_NDB:10171] xref: FlyBrain_NDB:10171 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003821 name: transmedullary Y neuron TmY4 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with both fine and bleb-type arborizations in lobula layer 4 and in lobula plate layers 2, 3 and 4, but shows only fine arborizations in lobula plate layer 1. It displays both fine and bleb-type arborizations in medulla layer M8, but has only fine arborizations in medulla layer M3 and M4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY4" RELATED [FlyBrain_NDB:10172] xref: FlyBrain_NDB:10172 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003822 name: transmedullary Y neuron TmY5 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with both fine and bleb-type arborizations in lobula layers 5 and 6, and in lobula plate layers 1, 2, 3 and 4, but it has only fine arborizations in lobula layer 4. It has both fine and bleb-type arborizations in medulla layer M10, but displays only fine arborizations in medulla layers M3, M5, M6, the serpentine layer, M8 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY5" RELATED [FlyBrain_NDB:10173] xref: FlyBrain_NDB:10173 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003823 name: transmedullary Y neuron TmY5a (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with both fine and bleb-type arborizations in lobula layers 4, 5 and 6, and in lobula plate layer 3, but only has fine arborizations in lobula plate layer 1. It displays both fine and bleb-type arborizations in medulla layers M6 and M8, and has fine arborizations in medulla layers M2, M3, M4, M5 and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY5a" RELATED [FlyBrain_NDB:10174] xref: FlyBrain_NDB:10174 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003824 name: transmedullary Y neuron TmY6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003825 name: transmedullary Y neuron TmY7 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with both fine and bleb-type arborizations in lobula layer 5, and in lobula plate layer 4, but only with fine arborizations in lobula layer 4 and lobula plate layer 3. It displays fine arborizations in medulla layers M1, M3, M8, and M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY7" RELATED [FlyBrain_NDB:10175] xref: FlyBrain_NDB:10175 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003826 name: transmedullary Y neuron TmY8 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with bleb-type arborizations in lobula layers 4 and 5, and in lobula plate layers 1 and 3. It displays bleb-type arborizations in medulla layers M6 and M10, and has fine arborizations in medulla layers M1, M2, M4, M5 and M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY8" RELATED [FlyBrain_NDB:10176] xref: FlyBrain_NDB:10176 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003827 name: transmedullary Y neuron TmY9 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with both fine and bleb-type arborizations in lobula layer 5, and in lobula plate layers 1 and 2. It displays both fine and bleb-type arborizations in medulla layers M3 and M8, but has only fine arborizations in medulla layer M4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY9" RELATED [FlyBrain_NDB:10177] xref: FlyBrain_NDB:10177 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003828 name: transmedullary Y neuron TmY10 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with bleb-type arborizations in lobula layers 5 and 6, and in lobula plate layer 1. It displays both fine and bleb-type arborizations in medulla layers M3, M6 and M8, but has only fine arborizations in medulla layer M4 and the serpentine layer." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY10" RELATED [FlyBrain_NDB:10165] xref: FlyBrain_NDB:10165 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003829 name: transmedullary Y neuron TmY11 (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary Y neuron that terminates with fine arborizations in lobula plate layers 1 and 3, and has bleb-type arborizations in lobula layers 4 and 5, and in lobula plate layer 3. It displays both fine and bleb-type arborizations in medulla layer M3, and has only fine arborizations in medulla layer M8, M9 and M10." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "TmY11" RELATED [FlyBrain_NDB:10166] xref: FlyBrain_NDB:10166 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003830 name: transmedullary neuron Tm3Y (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layer 4 with bleb-like terminal arborizations. It has fine arborizations in medulla layers M1, M4, and M5, and has bleb-type arborization in medulla layers M1, M4, M9 and M10. It differs from the transmedullary neuron Tm3 or TmY3 in that an individual of a retinotopic set may or may not form branches in the lobula plate." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm3Y" RELATED [FlyBrain_NDB:10154] xref: FlyBrain_NDB:10154 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003831 name: transmedullary neuron Tm5Y (Drosophila) namespace: fly_anatomy.ontology def: "Transmedullary neuron that terminates in lobula layers 4 and 5 with bleb-type arborizations. It displays fine arborizations in medulla layers M3, M4, M5, M6, M8 and the serpentine layer, and has bleb-type terminals in layers M6 and M8. It differs from transmedullary neuron Tm and transmedullary Y neuron TmY5 in that individuals of a retinotopic set may or may not form branches in the lobula plate." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tm5Y(11)" RELATED [FlyBrain_NDB:10158] synonym: "Tm5Y(13)" RELATED [FlyBrain_NDB:10159] xref: FlyBrain_NDB:10158 xref: FlyBrain_NDB:10159 is_a: FBbt:00003817 ! transmedullary Y neuron (Drosophila) [Term] id: FBbt:00003832 name: proximal medullary amacrine neuron (Drosophila) namespace: fly_anatomy.ontology def: "An amacrine neuron that is intrinsic to the medulla and that branches and arborizes in the proximal medulla. Generally, the soma is located in the cortex adjacent to the medulla and that projects through the proximal surface of the medulla, to form wide (sometimes very wide) terminal arborizations mainly or completely restricted to a single layer of the medulla." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Pm" RELATED [] is_a: CL:0000561 ! amacrine cell relationship: part_of FBbt:00003748 ! medulla (Drosophila) [Term] id: FBbt:00003833 name: proximal medullary amacrine neuron Pm1 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal medullary amacrine neuron that forms a broad terminal arbor with mixed morphology terminals that is restricted to medulla layer M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Pm1" RELATED [FlyBrain_NDB:10109] xref: FlyBrain_NDB:10109 is_a: FBbt:00003832 ! proximal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003834 name: proximal medullary amacrine neuron Pm1a (Drosophila) namespace: fly_anatomy.ontology def: "Proximal medullary amacrine neuron branches at the proximal surface of the medulla, with both branches forming a broad terminal arbor with mixed morphology terminals that is restricted to medulla layer M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Pm1a" RELATED [FlyBrain_NDB:10110] xref: FlyBrain_NDB:10110 is_a: FBbt:00003833 ! proximal medullary amacrine neuron Pm1 (Drosophila) [Term] id: FBbt:00003835 name: proximal medullary amacrine neuron Pm2 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal medullary amacrine neuron that projects along M7 and branches extensively at the M7/M8 boundary with each branch projecting into medulla layer M9 where it forms an arbor with mixed bleb-type and fine terminals." [FlyBase:FBrf0049410] subset: cur ! cur is_a: FBbt:00003832 ! proximal medullary amacrine neuron (Drosophila) [Term] id: FBbt:00003836 name: medullary tangential neuron (Drosophila) namespace: fly_anatomy.ontology def: "Tangential neuron of the optic lobe that projects and arborizes along the plane of one or more medulla layers." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Mt" RELATED [] is_a: FBbt:00007579 ! tangential neuron (Drosophila) [Term] id: FBbt:00003837 name: medullary tangential neuron Mt1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuron with a giant projection that extends along the serpentine layer sending out collaterals distally that arborize in medulla layer M4 and proximally that arborize in the serpentine layer and in layers M8 and 9." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Mt1" RELATED [FlyBrain_NDB:10050] xref: FlyBrain_NDB:10050 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003838 name: medullary tangential neuron Mt2 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron with a giant projection that extends across the anterior-posterior length of medulla layer 10, with some bleb-type arborizations here. It extensively arborizes with both fine and bleb-type arborizations throughout the whole of medulla layer M8, and occasionally crosses into layer M9. It displays both fine and bleb-type arborizations in medulla layers M3, M5 and M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. Figure 18 of Fischbach and Dittrich (1989) shows extensive arborization of this neuron in medulla layer M8, but states arborization is in the serpentine layer (M7). We have captured the details of the figure rather than the textual information. subset: cur ! cur synonym: "Mt2" RELATED [FlyBrain_NDB:10039] xref: FlyBrain_NDB:10039 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003839 name: medullary tangential neuron Mt3 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron which extends superficially throughout the anterior-posterior expanse of the distal medulla. It shows both fine and bleb-like arborizations throughout medulla layers M1, M2 and M3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mt3" RELATED [FlyBrain_NDB:10032] xref: FlyBrain_NDB:10032 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003840 name: medullary tangential neuron Mt4 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron that principally extends along the border of the serpentine layer and medulla layer M8 for approximately their anterior two-thirds. It shows extensive fine and bleb-like arborizations in medulla layers M8 and M9, but only fine arborizations in the serpentine layer and layer M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mt4" RELATED [FlyBrain_NDB:10036] xref: FlyBrain_NDB:10036 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003841 name: medullary tangential neuron Mt5 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron that extends along the proximal face of the medulla. It shows extensive fine and bleb-like arborizations in medulla layers M8, M9, and M10." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mt5" RELATED [FlyBrain_NDB:10037] xref: FlyBrain_NDB:10037 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003842 name: medullary tangential neuron Mt6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Mt6" RELATED [FlyBrain_NDB:10049] xref: FlyBrain_NDB:10049 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003843 name: medullary tangential neuron Mt7 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron that enters the medulla through its proximal face at the level of the serpentine layer. It shows extensive fine and bleb-like arborizations in medulla layers M3, M4, M5, M6, the serpentine layer and M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mt7" RELATED [FlyBrain_NDB:10030] xref: FlyBrain_NDB:10030 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003844 name: medullary tangential neuron Mt8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003845 name: medullary tangential neuron Mt9 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron whose axon extends along the proximal side of the medulla, and then extends along the top of the medulla neuropil, only sparing the most posterior part of it. It displays bleb-like terminals throughout the top of medulla layer M1, with a few entering the proximal side of layer M2." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mt9" RELATED [FlyBrain_NDB:10040] xref: FlyBrain_NDB:10040 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003846 name: medullary tangential neuron Mt10 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron that has bleb-like terminals in medulla layers M5 and M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mt10" RELATED [FlyBrain_NDB:10033] xref: FlyBrain_NDB:10033 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003847 name: medullary tangential neuron Mt11 (Drosophila) namespace: fly_anatomy.ontology def: "Medullary tangential neuron that enters the medulla via Cuccatti's bundle at the level of the serpentine layer. It shows bleb-like terminals in the serpentine layer and medulla layer M6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Mt11" RELATED [FlyBrain_NDB:10031] xref: FlyBrain_NDB:10031 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003848 name: medullary tangential neuron Mt12 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Mt12" RELATED [FlyBrain_NDB:10045] xref: FlyBrain_NDB:10045 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003849 name: medullary tangential neuron Mt13 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Mt13" RELATED [FlyBrain_NDB:10044] xref: FlyBrain_NDB:10044 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003850 name: medullary tangential neuron Mt14 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Mt14" RELATED [FlyBrain_NDB:10047] xref: FlyBrain_NDB:10047 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003851 name: medullary tangential neuron Mt15 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Mt15" RELATED [FlyBrain_NDB:10048] xref: FlyBrain_NDB:10048 is_a: FBbt:00003836 ! medullary tangential neuron (Drosophila) [Term] id: FBbt:00003852 name: lobula (Drosophila) namespace: fly_anatomy.ontology def: "Anterior domain of the lobula complex. It houses many columnar neurons." [FBC:BrainName, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "LO" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "Lo" RELATED [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045004 ! lobula complex (Drosophila) [Term] id: FBbt:00003853 name: lobula layer 1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040012 def: "Layer of the lobula that abuts the second optic chiasm. It is defined by the bushy arborizations of the T5 neurons, and by the terminal arborizations of transmedullary neuron Tm1 and Tm9." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "T5 layer" EXACT [FlyBase:FBrf0049410] synonym: "lobula layer Lo1" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003852 ! lobula (Drosophila) [Term] id: FBbt:00003854 name: lobula layer 2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040013 def: "Layer of the lobula that is second-most from the second optic chiasm. It is defined by the arborizations of lobula tangential neuron Lt5." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "lobula layer Lo2" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003852 ! lobula (Drosophila) [Term] id: FBbt:00003855 name: lobula layer 3 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040014 def: "Layer of the lobula that is third-most from the second optic chiasm. It contains the arborizations of lobula tangential neuron Lt6." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "lobula layer Lo3" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003852 ! lobula (Drosophila) [Term] id: FBbt:00003856 name: lobula layer 4 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040015 def: "Layer of the lobula that is fourth-most from the second optic chiasm. It contains the terminals of the translobula plate Tlp 2, 3, 4 and 5 neurons." [FlyBase:FBrf0049410] comment: Fischbach and Dittrich, (1989), comment that lobula layer 4 could potentially be further subdivided based on the stratified arborizations of the Tlp neurons. subset: cur ! cur synonym: "lobula layer Lo4" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003852 ! lobula (Drosophila) [Term] id: FBbt:00003857 name: Olt neuron (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral tangential neuron that arborizes across layers 2 and 3 of the lobula and that crosses the second optic chiasm and enters the medulla where it arborizes across layers M8 and M9. It also forms a few terminals in the lobula plate layer 1 and medulla layer M10." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "CT35" EXACT [FlyBrain_NDB:10029] xref: FlyBrain_NDB:10029 is_a: FBbt:00007579 ! tangential neuron (Drosophila) [Term] id: FBbt:00003858 name: heterolateral columnar neuron (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that connects the two lobulas and projects via the great commissure." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "HLCN" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00005129 ! columnar neuron (Drosophila) is_a: FBbt:00007407 ! great commissural interneuron (Drosophila) [Term] id: FBbt:00003859 name: lobula tangential neuron (Drosophila) namespace: fly_anatomy.ontology def: "Tangential neuron of the optic lobe that projects and arborizes along the plane of one or more layers of the lobula." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Lt" EXACT [FlyBase:FBrf0049410] synonym: "lobular tangential neuron" EXACT [] is_a: FBbt:00007579 ! tangential neuron (Drosophila) [Term] id: FBbt:00003860 name: lobula tangential neuron Lt1 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron that sends a thick projection into the proximal lobula that bifurcates with the combined terminal arbors of both branches covering the length of lobula layers 2 and 3 (Fischbach and Dittrich, 1989). Its axon innervates the ventrolateral protocerebrum (Otsuna and Ito, 2006)." [FlyBase:FBrf0049410, FlyBase:FBrf0193607] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989). subset: cur ! cur synonym: "LT1" EXACT [FlyBrain_NDB:10014] synonym: "lobular tangential neuron 1" EXACT [FlyBase:FBrf0049410] synonym: "lobular tangential neuron Lt1" EXACT [] xref: FlyBrain_NDB:10014 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003861 name: lobula tangential neuron Lt2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "LT2" EXACT [FlyBrain_NDB:10023] synonym: "lobular tangential neuron Lt2" EXACT [] xref: FlyBrain_NDB:10023 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003862 name: lobula tangential neuron Lt3 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron that extends along the length of lobula layer 2, forming bleb-type terminals from short colaterals within the layer." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "LT3" EXACT [FlyBrain_NDB:10024] synonym: "lobular tangential neuron Lt3" EXACT [] xref: FlyBrain_NDB:10024 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003863 name: lobula tangential neuron Lt4 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron that enters the lobula through its proximal side where it arborizes to cover much of layer 5 and 6 with distinctive bleb-type terminals from which short fine terminal branches project." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989). subset: cur ! cur synonym: "LT4" EXACT [FlyBrain_NDB:10025] synonym: "lobular tangential neuron Lt4" EXACT [] xref: FlyBrain_NDB:10025 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003864 name: lobula tangential neuron Lt5 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron that projects along the distal surface of the lobula (closest to the second optic chiasm), and send branches into lobula layer 2, where they form bleb-type terminals." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989). subset: cur ! cur synonym: "LT5" EXACT [FlyBrain_NDB:10026] synonym: "lobular tangential neuron Lt5" EXACT [] xref: FlyBrain_NDB:10026 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003865 name: lobula tangential neuron Lt6 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron with a thick projection that branches extensively immediately after entering the proximal side of the lobula. Each branch extends across the lobula, with some bifurcating, before all form terminal arbors that collectively cover the length of lobula layer 4. Terminals are of mixed morphology." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "LT6" RELATED [FlyBrain_NDB:10201] synonym: "lobular tangential neuron Lt6" EXACT [] xref: FlyBrain_NDB:10201 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003866 name: lobula tangential neuron Lt7 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron that branches extensively as it enters the lobula in layer 6, with each branch forming a fine, bushy arbor. Together, these arbors cover the whole width of layer 6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989). subset: cur ! cur synonym: "LT7" RELATED [FlyBrain_NDB:10027] synonym: "lobular tangential neuron Lt7" EXACT [] xref: FlyBrain_NDB:10027 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003867 name: lobula tangential neuron Lt8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "LT8" EXACT [FlyBrain_NDB:10028] synonym: "lobular tangential neuron Lt8" EXACT [] xref: FlyBrain_NDB:10028 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003868 name: lobula tangential neuron Lt9 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron that arborizes throughout lobula layer 1. The dendrites of this neuron frequently form conspicuous loops extending into the second optic chiasm." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "LT9" EXACT [FlyBrain_NDB:10046] synonym: "lobular tangential neuron Lt9" EXACT [] xref: FlyBrain_NDB:10046 is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003869 name: lobula tangential neuron Lt10 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron that branches in lobula layer 6 to form linking fibers that arborize in lobula layers 2 and 3. The combined arbor covers the length of these layers. There is only a single neuron of this class per optic lobe. Its cell body is located in the dorsal area of the lateral cell body region." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "LT10" EXACT [FlyBase:FBrf0193607] synonym: "lobular tangential neuron Lt10" EXACT [] is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00003870 name: lobula columnar neuron (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that innervates the lobula." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Lcn" RELATED [] synonym: "lobular columnar neuron" EXACT [] is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) is_a: FBbt:00005129 ! columnar neuron (Drosophila) [Term] id: FBbt:00003871 name: lobula columnar neuron Lcn1 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that arborizes with fine and bleb-type terminals in lobula layers 5 and 6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "LC1" EXACT [FlyBase:FBrf0193607, FlyBrain_NDB:10004] synonym: "lobular columnar neuron Lcn1" EXACT [] xref: FlyBrain_NDB:10004 is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003872 name: lobula columnar neuron Lcn2 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that arborizes in lobula layers 3-5. The distal part of this arborization is fine and bushy while the proximal part has thick projections with bleb-type terminals." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "LC2" EXACT [FlyBase:FBrf0193607, FlyBrain_NDB:10005] synonym: "lobular columnar neuron Lcn2" EXACT [] xref: FlyBrain_NDB:10005 is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003873 name: lobula columnar neuron Lcn3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lobular columnar neuron Lcn3" EXACT [] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003874 name: lobula columnar neuron Lcn4 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that has a fine terminal arborization in lobula layers 2, 3 and 4. It projects to an optic glomerulus in the ventrolateral protocerebrum. There are an estimated 31-36 cells in this class: 25-29 having their cell bodies in the mid-ventral area of the lateral cell body region, and 6-7 located in its anterior area." [FlyBase:FBrf0049410, FlyBase:FBrf0193607] comment: Otsuna states that lcn4 innervates an optic glomerulus in the vlpr. vlpr maps to the VLP in BrainName. Of the sub-regions of the VLP in the BrainName nomenclature, only one is glomerular - the PVLP. So this innervation must be to some optic glomerulus of the PVLP (FBbt:00007582). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "LC4" EXACT [FlyBase:FBrf0193607] synonym: "lobular columnar neuron Lcn4" EXACT [] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003875 name: lobula columnar neuron Lcn5 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that branches in lobula layer 5 with the branches forming fine terminal arbors in lobula layers 4, 5 and 6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "LC5" EXACT [FlyBase:FBrf0193607, FlyBrain_NDB:10006] synonym: "lobular columnar neuron Lcn5" EXACT [] xref: FlyBrain_NDB:10006 is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003876 name: lobula columnar neuron Lcn6 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that branches and arborizes in the lobula with a mix of bleb-type and fine terminals in layers 3-6. It fasciculates in the anterior optic tract, fasciculating with Lcn9 (Otsuna and Ito, 2006), and innervates an optic glomerulus in the lateral-most area of the dorsal-posterior ventrolateral protocerebrum." [FlyBase:FBrf0049410, FlyBase:FBrf0193607] comment: Otsuna states that lcn6 innervates an optic glomerulus in the vlpr. vlpr maps to the VLP in BrainName. Of the sub-regions of the VLP in the BrainName nomenclature, only one is glomerular - the PVLP. So this innervation must be to some optic glomerulus of the PVLP (FBbt:00007582). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "LC6" EXACT [FlyBase:FBrf0193607, FlyBrain_NDB:10006] synonym: "lobular columnar neuron Lcn6" EXACT [] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003877 name: lobula columnar neuron Lcn7 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that enters the lobula at its proximal surface. It has sparse, thin colaterals along its length up to layer 2 where it forms a broad arborization with blebs, and finer arborizations that extend into layer 3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "LC7" EXACT [FlyBase:FBrf0193607, FlyBrain_NDB:10007] synonym: "lobular columnar neuron Lcn7" EXACT [] xref: FlyBrain_NDB:10007 is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003878 name: lobula columnar neuron Lcn8 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that branches multiple times in layers 5 and 4 and forms a broad arborization in layer 3 with both bleb-type and fine terminals." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "LC8" EXACT [FlyBase:FBrf0193607, FlyBrain_NDB:10008] synonym: "lobular columnar neuron Lcn8" EXACT [] xref: FlyBrain_NDB:10008 is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00003879 name: lobula complex columnar neuron (Drosophila) namespace: fly_anatomy.ontology def: "Extrinsic columnar neuron of the optic lobe that innervates both the lobula and the lobula plate." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Lccn" RELATED [] synonym: "lobular complex columnar neuron" EXACT [] is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) is_a: FBbt:00005129 ! columnar neuron (Drosophila) [Term] id: FBbt:00003880 name: lobula complex columnar neuron Lccn1 (Drosophila) namespace: fly_anatomy.ontology def: "Extrinsic columnar neuron of the optic lobe that enters the lobula plate proximally. It bifurcates in the proximal lobula with both branches innervating both the lobula and the lobula plate. Between them the two branches innervate all layers of the lobula and lobula plate." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Lccn1" EXACT [FlyBase:FBrf0049410, FlyBrain_NDB:10008] synonym: "lobular complex columnar neuron Lccn1" EXACT [] xref: FlyBrain_NDB:10065 is_a: FBbt:00003879 ! lobula complex columnar neuron (Drosophila) [Term] id: FBbt:00003881 name: lobula complex columnar neuron Lccn2 (Drosophila) namespace: fly_anatomy.ontology def: "Extrinsic columnar neuron of the optic lobe whose soma lies in the cortex of the lobula plate. It bifurcates close to the soma, with one branch entering the lobula plate and in which it arborizes with both fine and bleb-type terminals at layers 1-4. It terminates in lobula layer 4 with an arbor that also has both fine and bleb-type terminals." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Lccn2" RELATED [FlyBrain_NDB:10035] synonym: "lobular complex columnar neuron Lccn2" EXACT [] xref: FlyBrain_NDB:10035 is_a: FBbt:00003879 ! lobula complex columnar neuron (Drosophila) [Term] id: FBbt:00003882 name: lobula intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Columnar neuron that innervates only the lobula." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Li" RELATED [] synonym: "lobular intrinsic neuron" EXACT [] is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003883 name: lobula intrinsic neuron Li1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body lies in the cortex of the lobula. It displays both fine and bleb-like terminals in lobula layers 4, 5 and 6." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Li1" RELATED [FlyBrain_NDB:10095] synonym: "lobular intrinsic neuron Li1" EXACT [] xref: FlyBrain_NDB:10095 is_a: FBbt:00003882 ! lobula intrinsic neuron (Drosophila) [Term] id: FBbt:00003884 name: lobula intrinsic neuron Li2 (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body lies in the cortex proximal to the lobula and that projects along the posterior edge of the lobula and then along the plane of lobula layer 1 where it arborizes with both fine and bleb-type terminals." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Li2" RELATED [FlyBrain_NDB:10184] synonym: "lobular intrinsic neuron Li2" EXACT [] xref: FlyBrain_NDB:10184 is_a: FBbt:00003882 ! lobula intrinsic neuron (Drosophila) [Term] id: FBbt:00003885 name: lobula plate (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001947 def: "Posterior domain of the lobula complex. It is divided into 4 layers and houses many large tangential neurons." [VFB_vol:00003885, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.htmll] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "LOP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "Lop" RELATED [] synonym: "lobula plate neuropil" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045004 ! lobula complex (Drosophila) [Term] id: FBbt:00003886 name: lobula plate layer 1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040018 def: "Layer of the lobula plate that abuts the second optic chiasm. The dendrites of the horizontal system neurons arborize exclusively in this layer." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "HS layer" EXACT [] synonym: "layer Lop1" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003885 ! lobula plate (Drosophila) [Term] id: FBbt:00003887 name: lobula plate layer 2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040019 def: "Layer of the lobula plate that is second-most from the second optic chiasm. The terminals of the T neuron T5b arborize in this layer." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "layer Lop2" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003885 ! lobula plate (Drosophila) [Term] id: FBbt:00003888 name: lobula plate layer 3 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040020 def: "Layer of the lobula plate that is third-most from the second optic chiasm. The terminals of the T neuron T5c arborize in this layer." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "layer Lop3" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003885 ! lobula plate (Drosophila) [Term] id: FBbt:00003889 name: lobula plate layer 4 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00040021 def: "Layer of the lobula plate that is the most distant from the second optic chiasm. The terminals of the T neuron T5d, the T neuron T4d, and most of the vertical system neurons terminate in this layer." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "layer Lop4" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003885 ! lobula plate (Drosophila) [Term] id: FBbt:00003890 name: translobula plate neuron (Drosophila) namespace: fly_anatomy.ontology def: "An intrinsic columnar neuron of the optic lobe whose cell body lies in the cortex of the lobula plate, and that arborizes in the lobula and lobula plate." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Tpl" RELATED [] synonym: "translobula-plate neuron" EXACT [] synonym: "translobullar plate neuron" EXACT [] is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003891 name: translobula plate neuron Tlp1 (Drosophila) namespace: fly_anatomy.ontology def: "Translobula plate neuron that terminates in lobula layer 5 with bleb-type terminals. It displays both fine and bleb-like extensive arborizations in lobula plate layers 1, 2 and 4, but only fine arborizations in lobula plate layer 3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tlp1" EXACT [FlyBrain_NDB:10127] synonym: "Tpl1" EXACT [] synonym: "translobula plate neuron Tpl1" EXACT [] synonym: "translobula-plate neuron Tlp1" EXACT [] synonym: "translobula-plate neuron Tpl1" EXACT [] synonym: "translobullar plate neuron Tlp1" EXACT [] synonym: "translobullar plate neuron Tpl1" EXACT [] xref: FlyBrain_NDB:10127 is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003892 name: translobula plate neuron Tlp2 (Drosophila) namespace: fly_anatomy.ontology def: "Translobula plate neuron that terminates in lobula layer 4 with bleb-type terminals. It displays both fine and bleb-type arborizations in lobula plate layer 1, but only fine, bushy arborizations in lobula plate layer 2." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tlp2" EXACT [FlyBrain_NDB:10128] synonym: "translobula plate neuron Tpl2" EXACT [] synonym: "translobula-plate neuron Tlp2" EXACT [] synonym: "translobula-plate neuron Tpl2" EXACT [] synonym: "translobullar plate neuron Tlp2" EXACT [] synonym: "translobullar plate neuron Tpl2" EXACT [] xref: FlyBrain_NDB:10128 is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003893 name: translobula plate neuron Tlp3 (Drosophila) namespace: fly_anatomy.ontology def: "Translobula plate neuron that terminates in lobula layer 4 with both fine and bleb-type terminals. It displays both fine and bleb-type arborizations in lobula plate layer 3 and 4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tlp3" RELATED [FlyBrain_NDB:10129] synonym: "Tpl3" EXACT [] synonym: "translobula plate neuron Tpl3" EXACT [] synonym: "translobula-plate neuron Tlp3" EXACT [] synonym: "translobula-plate neuron Tpl3" EXACT [] synonym: "translobullar plate neuron Tlp3" EXACT [] synonym: "translobullar plate neuron Tpl3" EXACT [] xref: FlyBrain_NDB:10129 is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003894 name: translobula plate neuron Tlp4 (Drosophila) namespace: fly_anatomy.ontology def: "Translobula plate neuron that terminates in lobula layer 4 with fine terminals. It displays both fine and bleb-type arborizations in lobula plate layer 2, but only fine arborizations in lobula plate layer 3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tlp4" EXACT [FlyBrain_NDB:10130] synonym: "Tpl4" EXACT [] synonym: "translobula plate neuron Tpl4" EXACT [] synonym: "translobula-plate neuron Tlp4" EXACT [] synonym: "translobula-plate neuron Tpl4" EXACT [] synonym: "translobullar plate neuron Tlp4" EXACT [] synonym: "translobullar plate neuron Tpl4" EXACT [] xref: FlyBrain_NDB:10130 is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003895 name: translobula plate neuron Tlp5 (Drosophila) namespace: fly_anatomy.ontology def: "Translobula plate neuron that terminates in lobula layer 4 with bleb-type terminals. It displays both fine and bleb-type arborizations in lobula plate layers 1 and 2, but only fine arborizations in lobula plate layer 3." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Tlp5" EXACT [FlyBrain_NDB:10131] synonym: "Tpl5" EXACT [] synonym: "translobula plate neuron Tpl5" EXACT [] synonym: "translobula-plate neuron Tlp5" EXACT [] synonym: "translobula-plate neuron Tpl5" EXACT [] synonym: "translobullar plate neuron Tlp5" EXACT [] synonym: "translobullar plate neuron Tpl5" EXACT [] xref: FlyBrain_NDB:10131 is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003896 name: translobula plate neuron Tlp6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp6" EXACT [] synonym: "Tpl6" EXACT [] synonym: "translobula plate neuron Tpl6" EXACT [] synonym: "translobula-plate neuron Tlp6" EXACT [] synonym: "translobula-plate neuron Tpl6" EXACT [] synonym: "translobullar plate neuron Tlp6" EXACT [] synonym: "translobullar plate neuron Tpl6" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003897 name: translobula plate neuron Tlp7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp7" EXACT [] synonym: "Tpl7" EXACT [] synonym: "translobula plate neuron Tpl7" EXACT [] synonym: "translobula-plate neuron Tlp7" EXACT [] synonym: "translobula-plate neuron Tpl7" EXACT [] synonym: "translobullar plate neuron Tlp7" EXACT [] synonym: "translobullar plate neuron Tpl7" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003898 name: translobula plate neuron Tlp8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp8" EXACT [] synonym: "Tpl8" EXACT [] synonym: "translobula plate neuron Tpl8" EXACT [] synonym: "translobula-plate neuron Tlp8" EXACT [] synonym: "translobula-plate neuron Tpl8" EXACT [] synonym: "translobullar plate neuron Tlp8" EXACT [] synonym: "translobullar plate neuron Tpl8" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003899 name: translobula plate neuron Tlp9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp9" EXACT [] synonym: "Tpl9" EXACT [] synonym: "translobula plate neuron Tpl9" EXACT [] synonym: "translobula-plate neuron Tlp9" EXACT [] synonym: "translobula-plate neuron Tpl9" EXACT [] synonym: "translobullar plate neuron Tlp9" EXACT [] synonym: "translobullar plate neuron Tpl9" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003900 name: translobula plate neuron Tlp10 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp6" EXACT [] synonym: "translobula plate neuron Tlp10" EXACT [] synonym: "translobula-plate neuron Tlp10" EXACT [] synonym: "translobullar plate neuron Tlp10" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003901 name: translobula plate neuron Tlp11 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp11" EXACT [] synonym: "Tpl11" EXACT [] synonym: "translobula plate neuron Tpl11" EXACT [] synonym: "translobula-plate neuron Tlp11" EXACT [] synonym: "translobula-plate neuron Tpl11" EXACT [] synonym: "translobullar plate neuron Tlp11" EXACT [] synonym: "translobullar plate neuron Tpl11" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003902 name: translobula plate neuron Tlp12 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp12" EXACT [] synonym: "Tpl12" EXACT [] synonym: "translobula plate neuron Tpl12" EXACT [] synonym: "translobula-plate neuron Tlp12" EXACT [] synonym: "translobula-plate neuron Tpl12" EXACT [] synonym: "translobullar plate neuron Tlp12" EXACT [] synonym: "translobullar plate neuron Tpl12" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003903 name: translobula plate neuron Tlp13 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp13" EXACT [] synonym: "Tpl13" EXACT [] synonym: "translobula plate neuron Tpl13" EXACT [] synonym: "translobula-plate neuron Tlp13" EXACT [] synonym: "translobula-plate neuron Tpl13" EXACT [] synonym: "translobullar plate neuron Tlp13" EXACT [] synonym: "translobullar plate neuron Tpl13" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003904 name: translobula plate neuron Tlp14 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp14" EXACT [] synonym: "Tpl14" EXACT [] synonym: "translobula plate neuron Tpl14" EXACT [] synonym: "translobula-plate neuron Tlp14" EXACT [] synonym: "translobula-plate neuron Tpl14" EXACT [] synonym: "translobullar plate neuron Tlp14" EXACT [] synonym: "translobullar plate neuron Tpl14" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003905 name: translobula plate neuron Tlp15 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Tlp15" EXACT [] synonym: "Tpl15" EXACT [] synonym: "translobula plate neuron Tpl15" EXACT [] synonym: "translobula-plate neuron Tlp15" EXACT [] synonym: "translobula-plate neuron Tpl15" EXACT [] synonym: "translobullar plate neuron Tlp15" EXACT [] synonym: "translobullar plate neuron Tpl15" EXACT [] is_a: FBbt:00003890 ! translobula plate neuron (Drosophila) [Term] id: FBbt:00003906 name: lobula plate giant neuron (Drosophila) namespace: fly_anatomy.ontology def: "A very large optic lobe tangential neuron with extensive arborization in the lobula plate." [FlyBase:FBrf0049410, FlyBase:FBrf0155898] subset: cur ! cur synonym: "Lpgn" RELATED [] synonym: "lobular plate giant neuron" EXACT [] is_a: FBbt:00003907 ! lobula plate tangential neuron (Drosophila) [Term] id: FBbt:00003907 name: lobula plate tangential neuron (Drosophila) namespace: fly_anatomy.ontology def: "Tangential neuron of the optic lobe that projects and arborizes along the plane of one or more layers of the lobula plate." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Lpt" RELATED [] synonym: "lobular plate tangential neuron" EXACT [] is_a: FBbt:00007579 ! tangential neuron (Drosophila) [Term] id: FBbt:00003908 name: lobula plate tangential neuron Lpt1 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula plate tangential neuron that projects along and arborizes in lobula plate layer 4. This arborization remains very close to the projection and includes both bleb-type and fine terminals." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Lpt1" RELATED [FlyBrain_NDB:10052] synonym: "lobular plate tangential neuron Lpt1" EXACT [] xref: FlyBrain_NDB:10052 is_a: FBbt:00003907 ! lobula plate tangential neuron (Drosophila) [Term] id: FBbt:00003909 name: lobula plate tangential neuron Lpt2 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula plate tangential neuron that projects along lobula plate layer 4 and that has short branches along its length that terminate as blebs in lobula plate layers 3 and 4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Lpt2" RELATED [FlyBrain_NDB:10038] synonym: "lobular plate tangential neuron Lpt2" EXACT [] xref: FlyBrain_NDB:10038 is_a: FBbt:00003907 ! lobula plate tangential neuron (Drosophila) [Term] id: FBbt:00003910 name: lobula plate intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "An interneuron that innervates only the lobula plate." [FBC:DOS] subset: cur ! cur is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) [Term] id: FBbt:00003911 name: Y neuron (Drosophila) namespace: fly_anatomy.ontology def: "Intrinsic columnar neuron of the optic lobe that has a cell body in the cortex of the lobula plate and that arborizes in the lobula plate before bifurcating in the second optic chiasm, with one branch innervating the lobula and the other the proximal medulla." [FlyBase:FBrf0049410] subset: cur ! cur synonym: "Y" RELATED [] is_a: FBbt:00007578 ! intrinsic columnar neuron (Drosophila) [Term] id: FBbt:00003912 name: Y neuron Y1 (Drosophila) namespace: fly_anatomy.ontology def: "Y neuron with a wide, unstratified arborization field in all layers of the lobula plate, a wide, thin, terminal arborization domain in lobula layer 5 and a small terminal arborization domain in medulla layer M8." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Y1" RELATED [FlyBrain_NDB:10178] xref: FlyBrain_NDB:10178 is_a: FBbt:00003911 ! Y neuron (Drosophila) [Term] id: FBbt:00003913 name: Y neuron Y2 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0049410] subset: cur ! cur is_a: FBbt:00003911 ! Y neuron (Drosophila) [Term] id: FBbt:00003914 name: Y neuron Y3 (Drosophila) namespace: fly_anatomy.ontology def: "Y neuron with a mix of bleb-type and fine arborizations in the lobula plate. These show some stratification, but cover all layers to some extent. The medulla branch has a relatively wide, terminal arborization field in M8-10 with a mix of bleb-type and fine arborization. The lobula innervating branch has narrow arborizations, also of mixed type in layers 2-5." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Y3" RELATED [FlyBrain_NDB:10179] xref: FlyBrain_NDB:10179 is_a: FBbt:00003911 ! Y neuron (Drosophila) [Term] id: FBbt:00003915 name: Y neuron Y4 (Drosophila) namespace: fly_anatomy.ontology def: "Y neuron whose cell body fiber projects through the lobula plate without arborizing. It branches extensively in the second optic chiasm, with one branch doubling back to form a fine terminal arborization in lobula plate layers 1 and 2, multiple branches arborizing throughout the lobula with a mix of terminal morphologies and a single branch projecting into the medulla where it forms a wide asymmetric terminal arbor that projects mainly along medulla layer M9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Y4" RELATED [FlyBrain_NDB:10180] xref: FlyBrain_NDB:10180 is_a: FBbt:00003911 ! Y neuron (Drosophila) [Term] id: FBbt:00003916 name: Y neuron Y5 (Drosophila) namespace: fly_anatomy.ontology def: "Y neuron that arborizes relatively broadly in all lobula plate layers and with a mix of terminal morphologies. Its branch in the lobula has a branched, terminal arborization with mixed terminal morphologies in lobula layers 1-3. Its branch in the medulla forms a mixed-morphology, highly branched, terminal arborization in medulla layers M7-10 with one or more very wide branches projecting along M10." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. subset: cur ! cur synonym: "Y5" RELATED [FlyBrain_NDB:10181] xref: FlyBrain_NDB:10181 is_a: FBbt:00003911 ! Y neuron (Drosophila) [Term] id: FBbt:00003917 name: horizontal system neuron (Drosophila) namespace: fly_anatomy.ontology def: "Giant neuron whose arbor fans out widely over the dorsal, central or ventral part of lobula plate layer 1. The (dendritic) arborization in the lobula plate is flattened in the anterior-posterior axis, and the axon extends medially and ventrally (Scott et al., 2002)." [FlyBase:FBrf0049410, FlyBase:FBrf0155898] subset: cur ! cur synonym: "HS" RELATED [FlyBrain_NDB:10043] synonym: "giant horizontal cell" EXACT [] xref: FlyBrain_NDB:10043 is_a: FBbt:00003906 ! lobula plate giant neuron (Drosophila) [Term] id: FBbt:00003918 name: dorsal giant horizontal cell HSN (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal system neuron whose dendritic arbor extends over the dorsal lobula plate." [FlyBase:FBrf0049410, FlyBase:FBrf0155898] subset: cur ! cur synonym: "HS north" EXACT [FlyBase:FBrf0155898] synonym: "HSN" EXACT [FlyBase:FBrf0049410] synonym: "dorsal horizontal neuron" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00003917 ! horizontal system neuron (Drosophila) [Term] id: FBbt:00003919 name: equatorial giant horizontal cell HSE (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal system neuron whose dendritic arbor extends over the central lobula plate." [FlyBase:FBrf0049410, FlyBase:FBrf0155898] subset: cur ! cur synonym: "HS equatorial" EXACT [FlyBase:FBrf0155898] synonym: "HSE" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00003917 ! horizontal system neuron (Drosophila) [Term] id: FBbt:00003920 name: ventral giant horizontal cell HSS (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal system neuron whose dendritic arbor extends over the ventral lobula plate." [FlyBase:FBrf0049410, FlyBase:FBrf0155898] subset: cur ! cur synonym: "HS south" EXACT [FlyBase:FBrf0155898] synonym: "HSS" EXACT [FlyBase:FBrf0049410] synonym: "ventral horizonal neuron" EXACT [FlyBase:FBrf0049410] is_a: FBbt:00003917 ! horizontal system neuron (Drosophila) [Term] id: FBbt:00003921 name: optic chiasm (Drosophila) namespace: fly_anatomy.ontology def: "The projection of axons between the lamina and medulla (1st optic chiasm) or between the medulla and lobula (2nd optic chiasm). The linear order of axons along each horizontal row of retinotopic columns is reversed by the chiasm." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur synonym: "optic chiasma" EXACT [] is_a: FBbt:00005814 ! chiasm (Drosophila) relationship: part_of FBbt:00040004 ! tract neuropil (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00003922 name: second optic chiasm (Drosophila) namespace: fly_anatomy.ontology def: "Chiasm lying between the medulla and the lobula/lobula plate of the optic lobe. Axons from the anterior side of the medulla project to the medial side of the lobula/lobula plate." [FBC:BrainName] subset: cur ! cur synonym: "SOCH" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "inner optic chiasm" EXACT [] synonym: "second optic chiasma" EXACT [] is_a: FBbt:00003921 ! optic chiasm (Drosophila) [Term] id: FBbt:00003923 name: deuterocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "The middle neuromere of the insect brain, connected to antennal nerve trunk." [ISBN:978-3-11-014898-5] subset: cur ! cur synonym: "deuterocerebrum" RELATED [] synonym: "deutocerebrum" EXACT [] is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00000009 ! antennal segment (Drosophila) [Term] id: FBbt:00003924 name: antennal lobe (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil domain of the deuterocerebrum that is the main target for innervation from the antennal nerve." [FBC:DOS] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) [Term] id: FBbt:00003925 name: antennal lobe glomerulus (Drosophila) namespace: fly_anatomy.ontology def: "Discrete, glial bound partition of the antennal lobe." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/structures/antennal.html] subset: cur ! cur synonym: "olfactory lobe glomerulus" RELATED [] is_a: UBERON:0001047 ! neural glomerulus relationship: part_of FBbt:00003924 ! antennal lobe (Drosophila) [Term] id: FBbt:00003926 name: antennal lobe glomerulus VP (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-posterior glomerulus of the adult antennal lobe." [FlyBase:FBrf0051437, FlyBase:FBrf0107836] subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003927 name: antennal lobe glomerulus VP1 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-posterior glomerulus of the adult antennal lobe. It is located lateral to glomerulus VP2, and medial to glomerulus VP3 (Stocker et al., 1990)." [FlyBase:FBrf0051437, FlyBase:FBrf0107836] comment: Discernible with Golgi impregnation or CoCl2 backfills (Stocker et al. 1990), but not with nc82/bruchtpilot immunolabelling (Laissue et al., 1999). subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00003926 ! antennal lobe glomerulus VP (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003928 name: antennal lobe glomerulus VP2 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-posterior glomerulus of the adult antennal lobe. It lies medial to glomerulus VP1 (Stocker et al., 1990)" [FlyBase:FBrf0051437, FlyBase:FBrf0107836] comment: Discernible with Golgi impregnation or CoCl2 backfills (Stocker et al. 1990), but not with nc82/bruchtpilot immunolabelling (Laissue et al., 1999). subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00003926 ! antennal lobe glomerulus VP (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003929 name: antennal lobe glomerulus VP3 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-posterior glomerular array of the adult antennal lobe. It lies lateral to glomerulus VP1 (Stocker et al., 1990)." [FlyBase:FBrf0051437, FlyBase:FBrf0107836] comment: Discernible with Golgi impregnation or CoCl2 backfills (Stocker et al. 1990), but not with nc82/bruchtpilot immunolabelling (Laissue et al., 1999). subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00003926 ! antennal lobe glomerulus VP (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003930 name: antennal glomerular array namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class and its subclasses have been obsoleted because they have not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so do not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003931 name: antennal glomerular array VA1 namespace: fly_anatomy.ontology def: "Ventro-anterior glomerular array of the adult antennal lobe." [FlyBase:FBrf0107836] is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class has been obsoleted because it has not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003932 name: antennal lobe glomerulus DA1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-anterior glomerulus of the adult antennal lobe. It lies ventrolateral to glomerulus DL3 and lateral to glomerulus DL4." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003933 name: antennal lobe glomerulus DA2 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-anterior glomerulus of the adult antennal lobe. It lies dorsal to glomerulus VA6 and medial to glomerulus DA4." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003934 name: antennal lobe glomerulus DA3 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-anterior glomerulus of the adult antennal lobe. It lies dorsal to glomerulus D and ventrolateral to glomerulus DL3." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003935 name: antennal lobe glomerulus DA4 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-anterior glomerulus of the adult antennal lobe. It lies dorsal to glomerulus VA6 and lateral to glomerulus DA2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003936 name: antennal lobe glomerulus VA1 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-anterior glomerulus of the adult antennal lobe. It is composed of four compartments." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003937 name: antennal lobe glomerulus VA5 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-anterior glomerulus of the adult antennal lobe. It lies lateral to glomerulus VC2 and ventromedial to the lateral compartment of glomerulus VA1." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003938 name: antennal lobe glomerulus VA6 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-anterior glomerulus of the adult antennal lobe. It lies ventral to glomerulus DA4 and dorsolateral to glomerulus VM5." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003939 name: antennal glomerular array VA2 namespace: fly_anatomy.ontology def: "Ventro-anterior glomerular array of adult antennal lobe." [FlyBase:FBrf0107836] is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class has been obsoleted because it has not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003940 name: antennal lobe glomerulus DM5 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-medial glomerulus of the adult antennal lobe. It lies dorsomedial to glomerulus VM5." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003941 name: antennal lobe glomerulus DM6 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-medial glomerulus of the adult antennal lobe. It lies dorsal to glomerulus VM5 and ventromedial to glomerulus D." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003942 name: antennal lobe glomerulus VA2 (Drosophila) namespace: fly_anatomy.ontology def: "Ventral anterior glomerulus of the adult antennal lobe. It lies medial to glomerulus VA3 and ventrolateral to glomerulus VM2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003943 name: antennal lobe glomerulus VA3 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-anterior glomerulus of the adult antennal lobe. It lies lateral to glomerulus VA2 and ventral to glomerulus VA7." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003944 name: antennal lobe glomerulus VA4 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-anterior glomerulus of the adult antennal lobe. It lies ventrolateral to glomerulus VA3 and medial to glomerulus VL1." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003945 name: antennal lobe glomerulus VA7 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-anterior glomerulus of the adult antennal lobe. It is composed of two compartments which together lie dorsal to glomerulus VA3, and dorsomedial to glomerulus VA5." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003946 name: antennal lobe glomerulus VC2 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-central glomerulus of the adult antennal lobe. It lies ventral to glomerulus VA6, and dorsolateral to glomerulus VA2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003947 name: antennal lobe glomerulus VM2 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-central glomerulus of the adult antennal lobe. It lies dorsomedial to glomerulus VA2 and ventromedial to glomerulus VM5." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003948 name: antennal lobe glomerulus VM3 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-medial glomerulus of the adult antennal lobe. It lies at the ventromedial corner of the antennal lobe, ventromedial to glomerulus VA2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003949 name: antennal lobe glomerulus VM5 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-medial glomerulus of the adult antennal lobe. It lies ventromedial to glomerulus VA6 and dorsolateral to glomerulus VM2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003950 name: antennal glomerular array V namespace: fly_anatomy.ontology def: "Ventral glomerular array of adult antennal lobe." [FlyBase:FBrf0107836] is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class has been obsoleted because it has not been used in curation or outside of the original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003951 name: antennal lobe glomerulus V (Drosophila) namespace: fly_anatomy.ontology def: "Ventrally located antennal lobe glomerulus innervated only by ipsilateral ORNs." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003952 name: antennal lobe glomerulus VC1 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-central antennal lobe glomerulus of the adult antennal lobe. It lies dorsal to the lateral compartment of glomerulus VC3." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003953 name: antennal lobe glomerulus VC3 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-central antennal lobe glomerulus of the adult antennal lobe. It is composed of two compartments which together lie dorsal to glomeruli VM1 and VM6, and dorsolateral to glomerulus VM7." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003954 name: antennal lobe glomerulus VL1 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-lateral glomerulus of the adult antennal lobe. It lies in the ventrolateral corner of the antennal lobe ventrolateral to glomerulus VA5 and ventromedial to the anterior compartment of glomerulus VL2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003955 name: antennal lobe glomerulus VL2 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-lateral glomerulus of the adult antennal lobe. It is composed of two compartments which together lie dorsolateral to glomerulus VL1." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003956 name: antennal lobe glomerulus VM1 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-medial glomerulus of the adult antennal lobe. It lies at the posterior medioventral corner of the antennal lobe, medial to glomerulus VM6." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003957 name: antennal lobe glomerulus VM4 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-medial glomerulus of the adult antennal lobe. It lies medial to glomerulus V and ventral to the lateral compartment of glomerulus VC3." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003958 name: antennal lobe glomerulus VM6 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-medial glomerulus of the adult antennal lobe. It lies ventrolateral to glomerulus VM1 and medial to glomerulus V (or immediately medial to glomerulus 2 in animals where that glomerulus is present)." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003959 name: antennal glomerular array D namespace: fly_anatomy.ontology def: "Dorsal glomerular array of adult antennal lobe." [FlyBase:FBrf0107836] is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class has been obsoleted because it has not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003960 name: antennal lobe glomerulus D (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal glomerulus of the adult antennal lobe. It lies dorsal to glomerulus DC1, and medial to glomerulus DL4." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003961 name: antennal lobe glomerulus DC1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-central glomerulus of the adult antennal lobe. It lies ventral to glomerulus D and dorsolateral to glomerulus DM2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003962 name: antennal lobe glomerulus DC2 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-central glomerulus of the adult antennal lobe. It lies lateral to glomerulus VM5 and medial to glomerulus DC3." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003963 name: antennal lobe glomerulus DC3 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-central glomerulus of the adult antennal lobe. It lies lateral to glomerulus DC2 and medial to the posterior portion of glomerulus VA1l." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003964 name: antennal lobe glomerulus DL3 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-lateral glomerulus of the adult antennal lobe. It lies at the dorsal tip of the antennal lobe dorsomedial to glomerulus DA1." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003965 name: antennal lobe glomerulus DL4 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-lateral glomerulus of the adult antennal lobe. It is a small glomerulus surrounded by glomeruli D, DL3 and DA1." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003966 name: antennal glomerular array DM3 namespace: fly_anatomy.ontology def: "Dorso-medial glomerular array of adult antennal lobe." [FlyBase:FBrf0107836] is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class has been obsoleted because it has not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003967 name: antennal glomerular array DM3 (anterior) namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class has been obsoleted because it has not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003968 name: antennal lobe glomerulus DL1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-lateral glomerulus of the adult antennal lobe. It lies lateral to glomerulus DM3 and medial to glomerulus DL5." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003969 name: antennal lobe glomerulus DL2 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-lateral glomerulus of the adult antennal lobe. Its two compartments lie ventrolateral to glomerulus DL1 and dorsomedial to glomerulus VL2a." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003970 name: antennal lobe glomerulus DL5 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-lateral glomerulus of the adult antennal lobe. It lies lateral to glomerulus DM3 and medial to glomerulus DL1." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003971 name: antennal lobe glomerulus DM2 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-lateral glomerulus of the adult antennal lobe. It lies dorsomedial to glomerulus VM7 and dorsomedial to glomerulus DM3." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003972 name: antennal lobe glomerulus DM3 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-medial glomerulus of the adult antennal lobe. It lies dorsal to glomerulus DM2 and medial to glomerulus DL5." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003973 name: antennal lobe glomerulus VM7 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-medial glomerulus of the adult antennal lobe. It lies ventral to glomerulus DM2 and dorsal to the medial compartment of glomerulus VC3." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003974 name: antennal glomerular array DM3 (posterior) namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) comment: This class has been obsoleted because it has not been used in curation or outside of original paper in which it was defined (FBrf0107836 == Laissue et al., 1999, J. Comp. Neurol. 405(4): 543--552), and so does not appear to be useful. subset: cur ! cur [Term] id: FBbt:00003975 name: antennal lobe glomerulus DM1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-medial glomerulus of the adult antennal lobe. It lies dorsal to glomerulus DM4 and medial to glomerulus DP1m." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003976 name: antennal lobe glomerulus DM4 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-medial glomerulus of the adult antennal lobe. It lies immediately ventral to glomerulus DM1 in the posterior most strata of the antennal lobe." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003977 name: antennal lobe glomerulus DP1 (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-posterior glomerulus of the adult antennal lobe. Its two compartments lie along the dorsolateral border of the posterior-most strata of the antennal lobe, lateral to glomerulus DM1 and dorsal to glomerulus DL2." [FlyBase:FBrf0107836] comment: Based on confocal microscopic analysis of glomeruli stained with the neuropil specific monoclonal antibody nc82. subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00003978 name: aristal nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00005892 ! adult peripheral nervous system (Drosophila) [Term] id: FBbt:00003979 name: antennal commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure consisting of about 2500 axons located anterior and ventral to the fan-shaped body which connects the two antennal lobes at their postero-dorsal corners." [FlyBase:FBrf0051437, ISBN:978-3-540-07343-7] subset: cur ! cur synonym: "VAC2" EXACT [] synonym: "in an con" EXACT [] synonym: "inter antennal connective" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) [Term] id: FBbt:00003980 name: adult antennal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve carrying the majority of afferents to the antennal lobe. Near its entrance to the brain it consists of about 1700-1800 axons. Approximately 1200 of these are sensory fibers from the third antennal segment, mainly axons from olfactory receptor neurons that project into the antennal lobe ventrally, at its antero-ventral corner (Stocker and Gendre, 1988; Kamikouchi et al., 2006). The remaining 500-600 fibers stem mainly from Johnston's organ neurons and mechanosensory sensilla of the anterior head capsule (Kamikouchi et al., 2006). These axons bypass the antennal lobe and target various neuropil domains including the antennal mechanosensory and motor center." [FlyBase:FBrf0047813, FlyBase:FBrf0051437, FlyBase:FBrf0194812, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas//schematic/frontschem1.html] comment: Stocker and Gendre provide the antennal nerve afferent counts based on TEM micrographs (Stocker and Gendre, 1988). Gross projection patterns within the brain were elucidated by Holmes-Blest reduced silver impregnation (Stocker et al., 1990). That the antennal nerve is composed of some 1200 third antennal segments and 500-600 fibers stemming from the JON and mechanosensory sensilla is based on two lines of evidence: 24hours after amputation of the funiculus, degeneration is seen in all but 500-600 fibers entering the antennal mechanosensory and motor center (Stocker et al., 1990); and Kamikouchi et al., (2006) used enhancer trap labelling and immunolabelling of JONs to trace their projections. subset: cur ! cur synonym: "AN" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00006045 ! antennal nerve (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) relationship: part_of FBbt:00003012 ! adult antennal segment (Drosophila) relationship: part_of FBbt:00005892 ! adult peripheral nervous system (Drosophila) [Term] id: FBbt:00003981 name: tegumentary nerve (Drosophila) namespace: fly_anatomy.ontology def: "The bilateral tegumentary nerves contain axons from mechanoreceptors on the head capsule. Axon fibers target the `AMMC` (FBbt:00003982) and may continue to the subesophageal ganglion and thoracic ganglion." [FBC:BrainName, FlyBase:FBrf0007735] comment: This nerve is clearly shown branching from the antennal nerve in Miller, 1950, but need more recent refs for this. subset: cur ! cur synonym: "TgN" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "TgNv" EXACT [FlyBase:FBrf0007735] synonym: "nervus tegumentalis" RELATED [FlyBase:FBrf0002274] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00003007 ! adult head (Drosophila) relationship: part_of FBbt:00005892 ! adult peripheral nervous system (Drosophila) [Term] id: FBbt:00003982 name: antennal mechanosensory and motor center (Drosophila) namespace: fly_anatomy.ontology def: "Neuropil domain located in the deuterocerebrum, postero-ventral to the antennal lobe. It contains the terminals of mechanosensory fibers mainly from the first and second antennal segments, most of which come from Johnston's organ neurons." [FlyBase:FBrf0194812, VFB_vol:00003982, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "AMC" EXACT [FlyBase:FBrf0187921] synonym: "AMMC" EXACT [] synonym: "antennal mechanosensory region" EXACT [] synonym: "antenno-mechanosensory center" EXACT [FlyBase:FBrf0187921] synonym: "dorsal lobe" RELATED [PMID:2648971] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045048 ! saddle (Drosophila) [Term] id: FBbt:00003983 name: outer antenno-cerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract that emerges from the antennal lobe lateral to the inner antenno-cerebral tract and extends into the lateral protocerebrum." [FBC:BrainName, FlyBase:FBrf0051437, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html] subset: cur ! cur synonym: "antenno-glomerular tract" RELATED [] synonym: "antennocerebral tract" RELATED [] synonym: "antennoglomerular tract" RELATED [] synonym: "lAPT" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "lateral antennal lobe-protocerebral tract" RELATED [FBC:BrainName] synonym: "oACT" RELATED [] is_a: FBbt:00100099 ! adult antenno-cerebral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00003984 name: middle antenno-cerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract branching from the inner antenno-cerebral tract close to the antennal lobe and extending to the lateral horn. Occasionally, fibers leave the middle antenno-cerebral tract halfway and extend along the pedunculus of the mushroom body to the calyx (Stocker, 1990)." [FBC:BrainName, FlyBase:FBrf0051437, FlyBase:FBrf0205263] subset: cur ! cur synonym: "mACT" EXACT [] synonym: "medial antenno-cerebral tract" RELATED [] synonym: "medial antennocerebral tract" RELATED [] synonym: "median antenno-cerebral tract" EXACT [] synonym: "mediolateral antennal lobe-protocerebral tract" RELATED [FBC:BrainName] synonym: "middle antennocerebral tract" RELATED [] synonym: "middle antennoglomerular tract" RELATED [] synonym: "mlAPT" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00100099 ! adult antenno-cerebral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00003985 name: inner antenno-cerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "A tract of about 200 axons that projects from the postero-dorsal end of the antennal lobe up to the median dorso-posterior protocerebrum (Stocker, 1990), where it terminates in the lateral horn (BrainName)." [FBC:BrainName, FlyBase:FBrf0051437, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html] subset: cur ! cur synonym: "AGT" EXACT [] synonym: "antenno-glomerular tract" EXACT [] synonym: "iACT" EXACT [] synonym: "inner antennocerebral tract" RELATED [] synonym: "inner antennoglomerular tract" RELATED [] synonym: "mAPT" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "medial antennal lobe-protocerebral tract" EXACT [FBC:BrainName] synonym: "tractus olfactrorio-globularis" EXACT [] is_a: FBbt:00100099 ! adult antenno-cerebral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00003986 name: antenno-supraesophageal tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "AST" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) [Term] id: FBbt:00003987 name: broad root (Drosophila) namespace: fly_anatomy.ontology def: "A short axon tract containing only a few fibers which projects from the posterior of the antennal lobe, just ventral to the inner antenno-cerebral tract. Fibers from this tract pass into posterior brain areas, e.g. into the region of the great commissure." [FlyBase:FBrf0006611, FlyBase:FBrf0051437] subset: cur ! cur synonym: "BR" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00003988 name: unilateral intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "An intrinsic neuron that does not cross the midline." [FBC:DOS] subset: cur ! cur synonym: "ipsilateral local interneuron" EXACT [] synonym: "unilateral local interneuron" RELATED [] is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) disjoint_from: FBbt:00003989 ! bilateral intrinsic neuron (Drosophila) [Term] id: FBbt:00003989 name: bilateral intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "A midline crossing bilateral intrinsic neuron that projects only within some pair of bilaterally symmetric synaptic neuropil domains and their connecting tracts. For example within the left and right antennal lobes and antennal commissure." [FBC:DOS] subset: cur ! cur synonym: "bilateral local interneuron" RELATED [] is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) [Term] id: FBbt:00003991 name: unilateral ACT relay interneuron (Drosophila) namespace: fly_anatomy.ontology def: "Unilateral antennal lobe projection neuron that projects from a single antennal lobe glomerulus to the mushroom body calyx and lateral horn via the inner antenno-cerebral tract." [FlyBase:FBrf0051437] comment: Maybe iPN. subset: cur ! cur synonym: "uACTI" EXACT [] is_a: FBbt:00007383 ! uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00003992 name: bilateral ACT relay interneuron (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral antennal lobe projection neuron whose dendrites innervate a small number of glomeruli in both antennal lobes and whose axon fasciculates with the (inner?) antenno-cerebral tract and innervates the mushroom body calyx and the lateral horn." [FlyBase:FBrf0051437] subset: cur ! cur synonym: "bACTI" RELATED [] is_a: FBbt:00007441 ! adult multiglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003993 name: fine arborization relay interneuron (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron with fine dendritic arborization throughout the antennal lobe." [FlyBase:FBrf0051437] subset: cur ! cur synonym: "FAI" RELATED [FlyBrain_NDB:10364] xref: FlyBrain_NDB:10364 is_a: FBbt:00007441 ! adult multiglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003994 name: giant symmetrical relay interneuron (Drosophila) namespace: fly_anatomy.ontology def: "A bilateral projection neuron of the adult antennal lobe with extensive dendritic arborization in both antennal lobes, extensive axonal arborizations in the posterior brain and a cell body situated in the midline of the subesophageal ganglion." [FlyBase:FBrf0051437] subset: cur ! cur synonym: "GSI" RELATED [FlyBrain_NDB:10365] xref: FlyBrain_NDB:10365 is_a: FBbt:00007441 ! adult multiglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003995 name: bilateral V relay interneuron (Drosophila) namespace: fly_anatomy.ontology def: "Asymmetric relay interneuron that branches profusely in antennal lobe glomerulus V. It sends a posterior projection that branches once. The lateral branch extends into the ventro-lateral deutocerebrum. The posterior branch connects with the mirror-symmetric contralateral V-relay interneuron in the subesophageal ganglion (SOG), and, slightly lateral to the midline, this process extends into the lateral SOG." [FlyBase:FBrf0051437] subset: cur ! cur synonym: "bVI" EXACT [FlyBrain_NDB:10366] synonym: "bilateral V-relay interneuron" EXACT [FlyBase:FBrf0051437] xref: FlyBrain_NDB:10366 is_a: FBbt:00067123 ! adult antennal lobe projection neuron (Drosophila) [Term] id: FBbt:00003996 name: thoracic relay interneuron (Drosophila) namespace: fly_anatomy.ontology def: "A unilateral interneuron with extensive arborization in one antennal lobe and the posterior brain, and a process that extends into the thorax." [FlyBase:FBrf0051437] subset: cur ! cur synonym: "TI" RELATED [FlyBrain_NDB:10367] xref: FlyBrain_NDB:10367 is_a: FBbt:00007441 ! adult multiglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00003997 name: circumesophageal tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) [Term] id: FBbt:00003998 name: deuterocerebral commissural tract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "deutocerebral commissural tract" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) [Term] id: FBbt:00003999 name: tritocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Neuromere of intercalary segment." [FlyBase:FBrf0074226, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html] subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00000010 ! intercalary segment (Drosophila) [Term] id: FBbt:00004000 name: tritocerebral center (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00007147 ! adult tritocerebrum (Drosophila) [Term] id: FBbt:00004001 name: tritocerebral commissure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00004000 ! tritocerebral center (Drosophila) [Term] id: FBbt:00004002 name: stomodeal nerve projection (Drosophila) namespace: fly_anatomy.ontology comment: Better recorded as connected_to than part_of tritocerebrum? VH. subset: cur ! cur is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of FBbt:00007147 ! adult tritocerebrum (Drosophila) [Term] id: FBbt:00004003 name: type a stomodeal nerve projection (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004002 ! stomodeal nerve projection (Drosophila) [Term] id: FBbt:00004004 name: type b stomodeal nerve projection (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004002 ! stomodeal nerve projection (Drosophila) [Term] id: FBbt:00004005 name: type c stomodeal nerve projection (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004002 ! stomodeal nerve projection (Drosophila) [Term] id: FBbt:00004006 name: pharyngeal nerve projection (Drosophila) namespace: fly_anatomy.ontology comment: Better recorded as connected_to than part_of tritocerebrum? VH. subset: cur ! cur synonym: "pharyngeal gustatory association centre" RELATED [] is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of FBbt:00007147 ! adult tritocerebrum (Drosophila) [Term] id: FBbt:00004007 name: accessory pharyngeal nerve projection (Drosophila) namespace: fly_anatomy.ontology comment: Better recorded as connected_to than part_of tritocerebrum? VH. subset: cur ! cur is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of FBbt:00007147 ! adult tritocerebrum (Drosophila) [Term] id: FBbt:00004008 name: labial nerve projection (Drosophila) namespace: fly_anatomy.ontology comment: Better recorded as connected_to than part_of tritocerebrum? VH. subset: cur ! cur is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of FBbt:00007147 ! adult tritocerebrum (Drosophila) [Term] id: FBbt:00004009 name: neurosecretory cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000381 ! neurosecretory neuron relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00004010 name: anteriolateral neurosecretory cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004009 ! neurosecretory cell (Drosophila) [Term] id: FBbt:00004011 name: dorsomedial neurosecretory cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004009 ! neurosecretory cell (Drosophila) [Term] id: FBbt:00004012 name: posteriolateral neurosecretory cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004009 ! neurosecretory cell (Drosophila) [Term] id: FBbt:00004013 name: subesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Region of the brain beneath the esophagus, consisting of the fused ganglia of the three gnathal segments." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur synonym: "SEG" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "SOG" EXACT [] synonym: "suboesophageal ganglion" EXACT [FlyBase:FBrf0080339] is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00004014 name: taste-sensory region glomerulus (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - gustatory center. subset: cur ! cur synonym: "labellar gustatory association centre" RELATED [] is_a: UBERON:0001047 ! neural glomerulus relationship: part_of FBbt:00007160 ! labial segment of adult subesophageal ganglion (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00004015 name: taste-sensory glomerulus DA (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004014 ! taste-sensory region glomerulus (Drosophila) [Term] id: FBbt:00004016 name: taste-sensory glomerulus M (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004014 ! taste-sensory region glomerulus (Drosophila) [Term] id: FBbt:00004017 name: taste-sensory glomerulus VL (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004014 ! taste-sensory region glomerulus (Drosophila) [Term] id: FBbt:00004018 name: taste-sensory glomerulus VM (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004014 ! taste-sensory region glomerulus (Drosophila) [Term] id: FBbt:00004019 name: cervical connective (Drosophila) namespace: fly_anatomy.ontology def: "Nerve connecting the posterior-most subesophageal ganglion to the thoracico-abdominal ganglion in the adult CNS." [FBC:BrainName, FlyBase:FBrf0064803] subset: cur ! cur synonym: "CV" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "cephalo-thoracic cord" EXACT [FlyBase:FBrf0007733] synonym: "cephalo-thoracic nerve strand" EXACT [] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00003623 ! adult central nervous system (Drosophila) [Term] id: FBbt:00004020 name: giant fiber neuron (Drosophila) namespace: fly_anatomy.ontology def: "A large, descending neuron that controls jump escape behavior (GO:0007630). Each adult has a bilaterally symmetric pair of these neurons, each with a large cell body at the posterior of the protocerebrum and a long primary neurite (GO:0070852) that branches to forms an extensive dendritic tree in the brain and an axon that projects, via the cervical connective, to the mesothorax. Targets of dendritic arborization include zone A of the antennal mechanosensory and motor center (AMMC) (Kamikouchi et al, 2009) and the inferior ventro-lateral protocerebrum. In the mesothorax, the axon forms electrical synapses with tergotrochanteral muscle motor neuron (TTMn) and peripherally synapsing interneurons (PSI)) of the mesothorax that in turn synapse to the motor neurons of the dorso-longitudinal flight muscles." [FlyBase:FBrf0044916, FlyBase:FBrf0085744, FlyBase:FBrf0207518, http://web.neurobio.arizona.edu/Flybrain/html/contrib/1997/moffat97a/l-307.html] subset: cur ! cur synonym: "GF" EXACT [FlyBase:FBrf0085744] synonym: "GFN" EXACT [FlyBase:FBrf0207518] synonym: "giant fibers" EXACT [] synonym: "giant fibre neuron" EXACT [] is_a: CL:0000099 ! interneuron relationship: part_of FBbt:00003623 ! adult central nervous system (Drosophila) [Term] id: FBbt:00004021 name: pharyngeal nerve (Drosophila) namespace: fly_anatomy.ontology def: "The pharyngeal nerve, 7um thick, arises from the subesophageal ganglion close to, or fused with, the accessory pharyngeal nerve at its extreme base. After branching to the cibarial sense organ, it loops beneath muscle 9 near the cibarial-esophageal junction to anastomose medially with the stomodeal nerve and the contralateral pharyngeal nerve. From the region of these anastomoses a single median nerve extends ventrally and gives a number of branches to the dilator muscle of the cibarial pump (Miller, 1950)." [FlyBase:FBrf0007735] comment: Need connectivity information from VH and AJ. subset: cur ! cur synonym: "PhN" RELATED BRAIN_NAME_ABV [FBC:BrainName] synonym: "PhyNv" RELATED [FlyBase:FBrf0007735] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00005892 ! adult peripheral nervous system (Drosophila) [Term] id: FBbt:00004022 name: dorsal cibarial sense organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the dorsal cibarial sense organ." [FlyBase:FBrf0074012, FlyBase:FBrf0208984] subset: cur ! cur is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004140 ! dorsal cibarial sense organ (Drosophila) [Term] id: FBbt:00004023 name: cibarial pump muscle neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "procurrent nerve" RELATED [] is_a: FBbt:00005123 ! motor neuron (Drosophila) [Term] id: FBbt:00004024 name: accessory pharyngeal nerve (Drosophila) namespace: fly_anatomy.ontology def: "The ~5um thick accessory pharyngeal nerve (Miller, 1950) contains axons connecting with the lower, anterior half of the adult head capsule. The two contralateral nerves closely parallel the pharyngeal nerves in their exit from the mandibular neuromere of the subesophageal ganglion, but penetrate at a lower level into the space between the anterior cibarial plate and the dilator muscles. From here, the nerve enters the labrum to connect with its muscles and sense organs." [FBC:BrainName, FlyBase:FBrf0007735] subset: cur ! cur synonym: "APhN" RELATED BRAIN_NAME_ABV [FBC:BrainName] synonym: "AcPhyNv" RELATED [FlyBase:FBrf0007735] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00005892 ! adult peripheral nervous system (Drosophila) [Term] id: FBbt:00004025 name: ventral cibarial sense organ neuron of proximal sensillum (Drosophila) namespace: fly_anatomy.ontology def: "One of two neurons innervating the proximal sensillum of the ventral cibarial sense organ." [FlyBase:FBrf0068700, FlyBase:FBrf0074012] subset: cur ! cur is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00100156 ! proximal sensillum of ventral cibarial sense organ (Drosophila) [Term] id: FBbt:00004026 name: labral sense organ neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004027 name: bypass nerve (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074012] comment: Need connectivity information from VH and AJ. subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00005892 ! adult peripheral nervous system (Drosophila) [Term] id: FBbt:00004028 name: adult labial nerve (Drosophila) namespace: fly_anatomy.ontology def: "The ~10um adult labial nerve arises from the ventral side of the subesophageal ganglion. Proximally, it gives off branches to the basiproboscis and haustellum (a branch consisting of ~10 motorneurons (Nayak and Singh, 1983)), and the labellar glands and sense organs (Miller, 1950). The labial nerve is anastomosed with the maxillary nerve until the latter branches off to the maxillary palpus (Nayak and Singh, 1983)." [FlyBase:FBrf0042883] comment: Miller, (1950) considers the maxillary nerve to be a branch of the compound maxillary-labial nerve. More recent studies (e.g. Rajashekhar and Singh (1994), or Nayak and Singh (1983)) consider the maxillary nerve and labial nerve to be separate anastomosing nerves. subset: cur ! cur synonym: "LbN" RELATED BRAIN_NAME_ABV [FBC:BrainName] synonym: "LbNv" RELATED [FlyBase:FBrf0007735] synonym: "labellar nerve" EXACT [FBC:BrainName] synonym: "maxillar labellar nerve" RELATED [FBC:BrainName] synonym: "maxillar labial nerve" RELATED [FBC:BrainName] synonym: "maxillary-labial nerve" RELATED [FlyBase:FBrf0007735] is_a: FBbt:00100333 ! labial nerve (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) relationship: part_of FBbt:00005892 ! adult peripheral nervous system (Drosophila) [Term] id: FBbt:00004029 name: adult labial sensory neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00004030 name: type I sensory neuron of coiled fibers (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004029 ! adult labial sensory neuron (Drosophila) [Term] id: FBbt:00004031 name: type II sensory neuron of shrubby fibers (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004029 ! adult labial sensory neuron (Drosophila) [Term] id: FBbt:00004032 name: type III sensory neuron of ventral ipsilateral fibers (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004029 ! adult labial sensory neuron (Drosophila) [Term] id: FBbt:00004033 name: type IV sensory neuron of dorsal ipsilateral fibers (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004029 ! adult labial sensory neuron (Drosophila) [Term] id: FBbt:00004034 name: type V sensory neuron of ventral contralateral fibers (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004029 ! adult labial sensory neuron (Drosophila) [Term] id: FBbt:00004035 name: type VI sensory neuron of dorsal contralateral fibers (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004029 ! adult labial sensory neuron (Drosophila) [Term] id: FBbt:00004036 name: type VII sensory neuron of central fibers (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004029 ! adult labial sensory neuron (Drosophila) [Term] id: FBbt:00004037 name: adult labial interneuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000099 ! interneuron [Term] id: FBbt:00004038 name: type A interneuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004037 ! adult labial interneuron (Drosophila) [Term] id: FBbt:00004039 name: type B interneuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004037 ! adult labial interneuron (Drosophila) [Term] id: FBbt:00004040 name: type C interneuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004037 ! adult labial interneuron (Drosophila) [Term] id: FBbt:00004041 name: type D interneuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004037 ! adult labial interneuron (Drosophila) [Term] id: FBbt:00004042 name: adult labial motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005123 ! motor neuron (Drosophila) [Term] id: FBbt:00004043 name: adult maxillary nerve (Drosophila) namespace: fly_anatomy.ontology def: "The adult maxillary nerve arises from the ventral side of the subesophageal ganglion. It contains axons from the sensory cells of the maxillary appendage, and contains ~120 axons. The maxillary nerve is anastomosed with the labial nerve for much of their lengths." [FBC:BrainName, FlyBase:FBrf0007735, FlyBase:FBrf0042883, FlyBase:FBrf0080339] comment: Miller, (1950) considers the maxillary nerve to be a branch of the compound maxillary-labial nerve. More recent studies (e.g. Rajashekhar and Singh (1994), or Nayak and Singh (1983)) consider the maxillary nerve and labial nerve to be separate anastomosing nerves. subset: cur ! cur synonym: "MXN" EXACT [FlyBase:FBrf0042883] synonym: "MxN" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "maxillary labellar nerve" RELATED [FBC:BrainName] synonym: "maxillary labial nerve" RELATED [FBC:FlyBase] synonym: "maxillary-labellar nerve" RELATED [FBC:BrainName] synonym: "maxillary-labial nerve" RELATED [FlyBase:FBrf0007735] is_a: FBbt:00100334 ! maxillary nerve (Drosophila) [Term] id: FBbt:00004044 name: LN period neuron (Drosophila) namespace: fly_anatomy.ontology def: "Period (FBgn0003068) expressing neuron of the adult brain whose cell body is located in the cortical region between the medulla and the central brain neuropil." [FlyBase:FBrf0193849] synonym: "LC" RELATED [] synonym: "LN" RELATED [] synonym: "LN per neuron" RELATED [] synonym: "adult lateral neuron" RELATED [] synonym: "lateral cell" RELATED [] synonym: "lateral neuron" RELATED [] is_a: FBbt:00100163 ! adult pacemaker neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00004045 name: LNd neuron (Drosophila) namespace: fly_anatomy.ontology def: "Lateral period-expressing neuron (LN) whose cell body is located in the dorsal-most cluster of LNs. These neurons project axons to the dorsal protocerebrum. These projections overlap with those of the DN neurons and many project contralaterally through the dorsal fusion commissure. Some dendrites from these neurons follow a complicated, looping path from the rest and project to the accessory medulla." [FlyBase:FBrf0193849] comment: Projection of axons vs dendrites judged on the basis of the presence (dendrites) or absence (axons) of synaptobrevin (Helfrich-Forster et al., 2007). synonym: "LNd" EXACT [FlyBase:FBrf0193849] synonym: "dorsal adult lateral neuron" EXACT [] synonym: "dorsolateral neurons" EXACT [FlyBase:FBrf0193849] is_a: FBbt:00004044 ! LN period neuron (Drosophila) [Term] id: FBbt:00004046 name: LNv neuron (Drosophila) namespace: fly_anatomy.ontology def: "Lateral period-expressing neuron (LN) whose cell body is located in the ventral cluster of LNs, at the level of the esophageal foramen (Helfrich-Forster, 1998). It has neurites associated with the accessory medulla (aMe) (Helfrich-Forster et al., 2007). The LN neuronal group are necessary and sufficient for generation of robust adult locomotor rhythms in the absence of environmental cues (Helfrich-Forster et al., 2007)." [FlyBase:FBrf0056576, FlyBase:FBrf0101921, FlyBase:FBrf0123172, FlyBase:FBrf0193849] comment: Assertion that LNvs are necessary and sufficient for locomotor rhythms based on mosaic analysis (Ewer et al., 1992), and by similarity of period-mutant flies to those with ablation of Pdf-expressing neurons (i.e. all LNvs except one cell), (Renn et al., 1999). synonym: "lateral neuron ventral" RELATED [] synonym: "ventral adult lateral neuron" RELATED [] synonym: "ventral lateral neurons" RELATED [] is_a: FBbt:00004044 ! LN period neuron (Drosophila) [Term] id: FBbt:00004047 name: stomodeal ganglion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "esophageal ganglion" RELATED [] synonym: "hypocerebral ganglion" RELATED [] synonym: "pharyngeal ganglion" RELATED [] synonym: "ventricular ganglion" RELATED [] is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00003623 ! adult central nervous system (Drosophila) [Term] id: FBbt:00004048 name: stomodeal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve arising from the corpus cardiacum (Rajashekhar and Singh, 1994), located along the dorsal surface of the esophagus. After it exits from the esophageal canal it loops ventrally and anastomoses with the pharyngeal nerve to form the recurrent nerve (Rajashekhar and Singh, 1994)." [FlyBase:FBrf0080339] subset: cur ! cur synonym: "recurrent nerve" RELATED [FlyBase:FBrf0007735] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004047 ! stomodeal ganglion (Drosophila) [Term] id: FBbt:00004049 name: cardia nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00004050 name: crop nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00004051 name: salivary gland nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00004052 name: thoracico-abdominal ganglion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "TAG" RELATED BRAIN_NAME_ABV [FBC:BrainName] synonym: "abdominal ganglion" RELATED [] synonym: "adult ventral nerve cord" EXACT [] synonym: "thoracic ganglion" RELATED [] is_a: UBERON:0000045 ! ganglion relationship: develops_from UBERON:0000934 ! ventral nerve cord relationship: part_of FBbt:00003623 ! adult central nervous system (Drosophila) [Term] id: FBbt:00004053 name: cervical nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004052 ! thoracico-abdominal ganglion (Drosophila) [Term] id: FBbt:00004054 name: prothoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00003020 ! adult prothoracic segment (Drosophila) relationship: part_of FBbt:00004052 ! thoracico-abdominal ganglion (Drosophila) [Term] id: FBbt:00004055 name: dorsal prothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004054 ! prothoracic neuromere (Drosophila) [Term] id: FBbt:00004056 name: accessory prothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004054 ! prothoracic neuromere (Drosophila) [Term] id: FBbt:00004057 name: ventral prothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004054 ! prothoracic neuromere (Drosophila) [Term] id: FBbt:00004058 name: prothoracic ventral neurosecretory neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0052426] subset: cur ! cur synonym: "VTNC" RELATED [] is_a: CL:0000381 ! neurosecretory neuron relationship: part_of FBbt:00004054 ! prothoracic neuromere (Drosophila) [Term] id: FBbt:00004059 name: mesothoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00003021 ! adult mesothoracic segment (Drosophila) relationship: part_of FBbt:00004052 ! thoracico-abdominal ganglion (Drosophila) [Term] id: FBbt:00004060 name: anterior dorsal mesothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004061 name: posterior dorsal mesothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004062 name: accessory mesothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004063 name: ventral mesothoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004064 name: mesothoracic ventral neurosecretory neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0052426] subset: cur ! cur synonym: "VNTC" RELATED [] is_a: CL:0000381 ! neurosecretory neuron relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004065 name: direct flight muscle motor neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0074636] subset: cur ! cur is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004066 name: b1 motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b1mn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004067 name: III3 motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "III3mn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004068 name: b2 motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "b2mn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004069 name: III1 motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "III1mn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004070 name: I1 motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "I1mn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004071 name: dorsal tp motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dtpmn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004072 name: ventral tp motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "vtpmn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004073 name: tergal depressor of trochanter muscle motor neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "TDTmn" RELATED [] is_a: FBbt:00004065 ! direct flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004074 name: indirect flight muscle motor neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0048552] subset: cur ! cur synonym: "MN" RELATED [] is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004075 name: indirect flight muscle motor neuron MN1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004074 ! indirect flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004076 name: indirect flight muscle motor neuron MN2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004074 ! indirect flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004077 name: indirect flight muscle motor neuron MN3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004074 ! indirect flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004078 name: indirect flight muscle motor neuron MN4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004074 ! indirect flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004079 name: indirect flight muscle motor neuron MN5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004074 ! indirect flight muscle motor neuron (Drosophila) [Term] id: FBbt:00004080 name: wing nerve (Drosophila) namespace: fly_anatomy.ontology def: "Axon bundle originating in the wing." [FlyBase:FBrf0040724] subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00004083 name: giant sensillum of the distal radius (Drosophila) namespace: fly_anatomy.ontology def: "Large, singly-innervated campaniform sensillum of the distal radius." [FlyBase:FBrf0032909, FlyBase:FBrf0040724] comment: Note that several references use the term 'giant sensillum of the distal radius' (e.g. Palka et al., 1979), and others use the term 'giant sensillum of the dorsal radius' (e.g. Huang et al., 1991). For consistency, we adopt this latter usage. subset: cur ! cur synonym: "giant sensillum of the dorsal radius" EXACT [FlyBase:FBrf0032909] synonym: "sensillum campaniformium of dorsal radius Sc1" RELATED [FlyBase:FBrf0088656] synonym: "wing nerve GSR" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00004084 name: dorsal humeral crossvein campaniform sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Humeral crossvein campaniform sensilla located on the dorsal side of the wing. It is situated close to the ventral humeral crossvein campaniform sensillum separated by the intermediate portion of the costal nerve (Murray et al., 1984)." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "HCV" RELATED [] synonym: "d.HCV" RELATED [] synonym: "dHCV" RELATED [FlyBase:FBrf0040724] synonym: "wing nerve dHCV" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00004766 ! humeral crossvein (Drosophila) [Term] id: FBbt:00004085 name: ventral humeral crossvein campaniform sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Humeral crossvein campaniform sensilla located on the ventral side of the wing. It is situated close to the dorsal humeral crossvein campaniform sensillum separated by the intermediate portion of the costal nerve (Murray et al., 1984)." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "v.HCV" RELATED [] synonym: "vHCV" RELATED [] synonym: "wing nerve vHCV" EXACT [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00004766 ! humeral crossvein (Drosophila) [Term] id: FBbt:00004086 name: anterior crossvein campaniform sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Campaniform sensilla associated with the anterior cross vein and wing vein L3." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "ACV" RELATED [FlyBase:FBrf0040724] synonym: "sensillum campaniformium of anterior crossvein" EXACT [] synonym: "wing nerve ACV" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004767 ! anterior crossvein (Drosophila) [Term] id: FBbt:00004087 name: campaniform sensillum L3-1 of wing vein L3 (Drosophila) namespace: fly_anatomy.ontology def: "Most proximal of the three dorsal sensilla of wing vein L3." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "L3-1" RELATED [FlyBase:FBrf0040724] synonym: "wing nerve L3-1" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00004088 name: campaniform sensillum L3-2 of wing vein L3 (Drosophila) namespace: fly_anatomy.ontology def: "Medial campaniform sensilla of wing vein L3." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "L3-2" RELATED [] synonym: "wing nerve L3-2" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00004089 name: campaniform sensillum L3-3 of wing vein L3 (Drosophila) namespace: fly_anatomy.ontology def: "Distal most of the three dorsal sensilla of wing vein L3." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "L3-3" RELATED [] synonym: "wing nerve L3-3" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00004090 name: ventral campaniform sensillum of wing vein L3 (Drosophila) namespace: fly_anatomy.ontology def: "Mono-innervated sensilla of wing vein L3. It is found close to the point where L3 connects with wing vein L2." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "L3-v" RELATED [] synonym: "wing nerve L3-v" EXACT [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00004091 name: accessory mesothoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ovoid" RELATED [] is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00004052 ! thoracico-abdominal ganglion (Drosophila) [Term] id: FBbt:00004092 name: metathoracic neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00003022 ! adult metathoracic segment (Drosophila) relationship: part_of FBbt:00004052 ! thoracico-abdominal ganglion (Drosophila) [Term] id: FBbt:00004093 name: metathoracic ventral thoracic neurosecretory neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0052426] subset: cur ! cur synonym: "VNTC" RELATED [] is_a: CL:0000381 ! neurosecretory neuron relationship: part_of FBbt:00004092 ! metathoracic neuromere (Drosophila) [Term] id: FBbt:00004094 name: dorsal metathoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004092 ! metathoracic neuromere (Drosophila) [Term] id: FBbt:00004095 name: accessory metathoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004092 ! metathoracic neuromere (Drosophila) [Term] id: FBbt:00004096 name: ventral metathoracic nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00004092 ! metathoracic neuromere (Drosophila) [Term] id: FBbt:00004097 name: abdominal neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of FBbt:00000021 ! abdominal segment (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00004098 name: gustatory center of genitalia (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0068700] subset: cur ! cur synonym: "gustatory centre of genitalia" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004097 ! abdominal neuromere (Drosophila) [Term] id: FBbt:00004099 name: abdominal nerve trunk (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000064, FlyBase:FBim0000065, FlyBase:FBrf0007735] subset: cur ! cur synonym: "AbNvTr" EXACT [FlyBase:FBrf0007735, FlyBase:FBrf0193596] synonym: "abdominal median nerve trunk" EXACT [FlyBase:FBrf0193596] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) relationship: part_of FBbt:00004097 ! abdominal neuromere (Drosophila) [Term] id: FBbt:00004100 name: Pdf neuron of abdominal neuromere (Drosophila) namespace: fly_anatomy.ontology def: "Pdf positive neuron whose soma is located in the cortex of the fused adult abdominal ganglia. There are 4-6 of these, all of which project posteriorly, fasciculating with the abdominal nerve trunk." [FlyBase:FBrf0093121] subset: cur ! cur synonym: "PDFAb" RELATED [] synonym: "pigment-dispersing hormone-immunoreactive neuron of abdominal neuromere" RELATED [] is_a: FBbt:00100171 ! adult Pdf neuron (Drosophila) relationship: develops_from FBbt:00100169 ! larval Pdf neuron of abdominal neuromere (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00004101 name: peptidergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some peptide (CHEBI:16670)." [FBC:auto_generated_definition, FlyBase:FBrf0052426] subset: cur ! cur synonym: "peptinergic neuron" RELATED [] is_a: CL:0000540 ! neuron [Term] id: FBbt:00004102 name: dorsal group dA neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004101 ! peptidergic neuron (Drosophila) [Term] id: FBbt:00004103 name: ventral group vA neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004101 ! peptidergic neuron (Drosophila) [Term] id: FBbt:00004104 name: abdominal segment nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00004105 name: abdominal segment 1 nerve (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000064, FlyBase:FBim0000065, FlyBase:FBrf0007735] subset: cur ! cur synonym: "Ab1Nv" EXACT [FlyBase:FBrf0007735] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00004106 name: abdominal segment 2 nerve (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000064, FlyBase:FBim0000065, FlyBase:FBrf0007735] subset: cur ! cur synonym: "AbNv2" EXACT [FlyBase:FBrf0007735] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00004107 name: abdominal segment 3 nerve (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000064, FlyBase:FBim0000065, FlyBase:FBrf0007735] subset: cur ! cur synonym: "AbNv3" EXACT [FlyBase:FBrf0007735] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00004108 name: abdominal segment 4 nerve (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000064, FlyBase:FBim0000065, FlyBase:FBrf0007735] subset: cur ! cur synonym: "AbNv4" EXACT [FlyBase:FBrf0007735] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00004109 name: abdominal segment 5 nerve (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBim0000064, FlyBase:FBim0000065, FlyBase:FBrf0007735] subset: cur ! cur synonym: "AbNv5" EXACT [FlyBase:FBrf0007735] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00004110 name: abdominal segment 6 nerve (Drosophila) namespace: fly_anatomy.ontology comment: Not clear where this term comes from. No A6 specific adult abdominal nerve marked in main classical references: FBrf0007735 or FBrf0002274. subset: cur ! cur is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00004111 name: abdominal segment 7 nerve (Drosophila) namespace: fly_anatomy.ontology comment: Not clear where this term comes from. No A7 specific adult abdominal nerve marked in main classical references: FBrf0007735 or FBrf0002274. subset: cur ! cur is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00004112 name: abdominal segment 8 nerve (Drosophila) namespace: fly_anatomy.ontology comment: Not clear where this term comes from. No A8 specific adult abdominal nerve marked in main classical references: FBrf0007735 or FBrf0002274. subset: cur ! cur is_a: FBbt:00002179 ! abdominal nerve (Drosophila) is_a: FBbt:00004104 ! abdominal segment nerve (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00004113 name: adult sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some adult (FBbt:00003004)." [FBC:auto_generated_definition, FlyBase:FBrf0007734, FlyBase:FBrf0031004] subset: cur ! cur is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00004115 name: head bristle (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that is part of some head capsule (FBbt:00004482)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005177 ! chaeta (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004116 name: orbital bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004117 name: anterior orbital bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "proclinate orbital bristle" RELATED [] is_a: FBbt:00004116 ! orbital bristle (Drosophila) [Term] id: FBbt:00004118 name: middle orbital bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "anterior reclinate orbital bristle" RELATED [] is_a: FBbt:00004116 ! orbital bristle (Drosophila) [Term] id: FBbt:00004119 name: posterior orbital bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "posterior reclinate orbital bristle" RELATED [] is_a: FBbt:00004116 ! orbital bristle (Drosophila) [Term] id: FBbt:00004120 name: occipital bristle (Drosophila) namespace: fly_anatomy.ontology def: "Small bristle of the posterior head, located just above the neck (occipital foramen) arranged in a dense cluster." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "occipital seta" EXACT [FlyBase:FBrf0007734] synonym: "supracervical bristle" RELATED [] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of UBERON:0003155 ! arthropod occiput [Term] id: FBbt:00004121 name: vertical bristle (Drosophila) namespace: fly_anatomy.ontology def: "Large bristle on top of the head, immediately medial to the eye. There are two pairs of these per animal." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "vertical seta" EXACT [FlyBase:FBrf0007734] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004122 name: anterior vertical bristle (Drosophila) namespace: fly_anatomy.ontology def: "The anterior-most of each pair of vertical bristles." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "inner vertical bristle" RELATED [] is_a: FBbt:00004121 ! vertical bristle (Drosophila) [Term] id: FBbt:00004123 name: posterior vertical bristle (Drosophila) namespace: fly_anatomy.ontology def: "The posterior-most of each pair of vertical bristles." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "outer vertical bristle" RELATED [] is_a: FBbt:00004121 ! vertical bristle (Drosophila) [Term] id: FBbt:00004124 name: frontal bristle (Drosophila) namespace: fly_anatomy.ontology def: "Small bristle of the anterior head, located above the antennae on the postfrons in two arcs of 4 bristles each, arranged so that the ventral-most bristle occupies a more medial position than the dorsal-most." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "frontal seta" RELATED [FlyBase:FBrf0007734] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004490 ! postfrons (Drosophila) [Term] id: FBbt:00004125 name: fronto-orbital bristle (Drosophila) namespace: fly_anatomy.ontology def: "Small bristle of the anterior head, located on the postfrons immediately medial to the eye and arranged in a dorsal to ventral line." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "fronto-orbital seta" EXACT [FlyBase:FBrf0007734] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004485 ! fronto-orbital plate (Drosophila) [Term] id: FBbt:00004126 name: postvertical bristle (Drosophila) namespace: fly_anatomy.ontology def: "Large bristle of the dorsal head, located immediately anterior to the ocelli. There are two of these per animal." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "postvertical seta" EXACT [FlyBase:FBrf0007734] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004127 name: postorbital bristle (Drosophila) namespace: fly_anatomy.ontology def: "Small bristle of the posterior head, located immediately adjacent to the posterior of the eye." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "postorbital seta" EXACT [FlyBase:FBrf0007734] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004491 ! gena (Drosophila) [Term] id: FBbt:00004128 name: ocellar bristle (Drosophila) namespace: fly_anatomy.ontology def: "Large bristle of the dorsal head, located immediately posterior to the ocelli. There are two of these per animal." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "ocellar seta" EXACT [FlyBase:FBrf0007734] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004495 ! ocellar triangle (Drosophila) [Term] id: FBbt:00004129 name: interocellar bristle (Drosophila) namespace: fly_anatomy.ontology def: "Small bristle of the dorsal head, located between the ocelli, arranged in two anterior-posterior rows." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "interocellar seta" EXACT [FlyBase:FBrf0007734] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004495 ! ocellar triangle (Drosophila) [Term] id: FBbt:00004130 name: vibrissae (Drosophila) namespace: fly_anatomy.ontology def: "Curved bristle of head capsule, located under the eyes and above the mouthparts." [FlyBase:FBrf0007734] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004491 ! gena (Drosophila) [Term] id: FBbt:00004131 name: subvibrissal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004132 name: postgenal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00004170 ! postgenal sensillum (Drosophila) relationship: part_of FBbt:00004496 ! postgena (Drosophila) [Term] id: FBbt:00004133 name: interommatidial bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "interfacetal bristle" RELATED [] is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of UBERON:0000018 ! compound eye [Term] id: FBbt:00004134 name: premandibular bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004115 ! head bristle (Drosophila) is_a: FBbt:00004170 ! postgenal sensillum (Drosophila) relationship: part_of FBbt:00004496 ! postgena (Drosophila) [Term] id: FBbt:00004135 name: pharyngeal sense organ (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0068700] subset: cur ! cur is_a: UBERON:0000963 ! head sensillum [Term] id: FBbt:00004136 name: cibarial fish-trap bristle (Drosophila) namespace: fly_anatomy.ontology def: "Sensory bristle on the anterior plate of the cibarium. These bristles project upwardly and are arranged in two rows." [FlyBase:FBrf0007733, FlyBase:FBrf0167539] subset: cur ! cur synonym: "cibarial fish trap bristle" EXACT [] synonym: "cibarial fishtrap bristle" EXACT [] synonym: "filter apparatus of McAlpine" EXACT [] synonym: "posterior cibarial setae" RELATED [] synonym: "satellite bristles" RELATED [FlyBase:FBrf0074012] is_a: FBbt:00005177 ! chaeta (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004135 ! pharyngeal sense organ (Drosophila) relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00004137 name: dorsal row bristle of the cibarium (Drosophila) namespace: fly_anatomy.ontology def: "One of 6-8 singly innervated bristles of dorsal row of the cibarium." [FlyBase:FBrf0035962, FlyBase:FBrf0053815, FlyBase:FBrf0074012, FlyBase:FBrf0167539] comment: Disambiguation: these bristles are sometimes referred to as the 'dorsal row' (Stocker and Schorderet, 1981; Nayak and Singh, 1983), which may be confused with the 'dorsal row' sensilla of the anterior wing margin (Bate and Martinez Arias, 1991). They are also referred to as the upper (or proximal) fishtrap bristles (Gendre et al., 2004). synonym: "DB" RELATED [] synonym: "dorsal row" BROAD [] synonym: "dorsal row cibarial fish-trap bristle" EXACT [] synonym: "filter apparatus of McAlpine" RELATED [] synonym: "fulcral organ" RELATED [] synonym: "posterior cibarial setae" RELATED [] synonym: "upper row cibarial fish trap bristle" EXACT [] synonym: "upper row cibarial fish-trap bristle" EXACT [] synonym: "upper row cibarial fishtrap bristle" EXACT [] is_a: FBbt:00004136 ! cibarial fish-trap bristle (Drosophila) relationship: part_of FBbt:00100162 ! dorsal row of the cibarium (Drosophila) [Term] id: FBbt:00004138 name: ventral row bristle of the cibarium (Drosophila) namespace: fly_anatomy.ontology def: "One of 12-15 singly innervated small bristles of the ventral row of the cibarium." [FlyBase:FBrf0035962, FlyBase:FBrf0053815, FlyBase:FBrf0074012, FlyBase:FBrf0167539] comment: Disambiguation: these bristles are sometimes referred to as the 'ventral row' (Stocker and Schorderet, 1981; Nayak and Singh, 1983), which may be confused with the 'ventral row' sensilla of the anterior wing margin (Bate and Martinez Arias, 1991). Also referred to as the lower/distal fishtrap bristles (Gendre et al., 2004). synonym: "VB" RELATED [] synonym: "lower row cibarial fish trap bristle" EXACT [] synonym: "lower row cibarial fish-trap bristle" EXACT [] synonym: "lower row cibarial fishtrap bristle" EXACT [] synonym: "ventral row" BROAD [] synonym: "ventral row cibarial fish-trap bristle" RELATED [] is_a: FBbt:00004136 ! cibarial fish-trap bristle (Drosophila) relationship: part_of FBbt:00100161 ! ventral row of the cibarium (Drosophila) [Term] id: FBbt:00004139 name: cibarial sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Sense organ located in the cibarium." [FlyBase:FBrf0035962, FlyBase:FBrf0167539] subset: cur ! cur synonym: "fulcral organ" RELATED [] is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: FBbt:00007234 ! compound sense organ (Drosophila) relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00004140 name: dorsal cibarial sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most cibarial sense organ near the upper end of the posterior cibarial plate, and innervated by the pharyngeal nerve." [FlyBase:FBrf0007733, FlyBase:FBrf0074012] subset: cur ! cur synonym: "DCSO" EXACT [] synonym: "dorsal fulcral organ of Hertweck" RELATED [FlyBase:FBrf0075527] synonym: "fulcralorgan" RELATED [FlyBase:FBrf0035962] is_a: FBbt:00004139 ! cibarial sense organ (Drosophila) relationship: part_of FBbt:00004529 ! posterior plate of cibarium (Drosophila) [Term] id: FBbt:00004141 name: dorsal cibarial posterior sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Most posterior of the two dorsal cibarial sensilla (Montell, 2009). Innervated by three gustatory receptors (Gendre et al, 2004)." [FlyBase:FBrf0074012, FlyBase:FBrf0167539, FlyBase:FBrf0208984] subset: cur ! cur synonym: "DCSO1" RELATED [] synonym: "dorsal cibarial sensillum 1" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004140 ! dorsal cibarial sense organ (Drosophila) [Term] id: FBbt:00004142 name: dorsal cibarial anterior sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Most anterior of the two dorsal cibarial sensilla (Montell, 2009). Innervated by three gustatory receptors (Gendre et al., 2004)." [FlyBase:FBrf0074012, FlyBase:FBrf0167539, FlyBase:FBrf0208984] subset: cur ! cur synonym: "DCSO2" RELATED [] synonym: "dorsal cibarial sensillum 2" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004140 ! dorsal cibarial sense organ (Drosophila) [Term] id: FBbt:00004143 name: ventral cibarial sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most cibarial sense organ near the upper end of the posterior cibarial plate, and innervated by the pharyngeal nerve (Demerec, 1994; Nayak and Singh, 1983). It is flanked distally and proximally by the ventral row bristles and the dorsal row bristles, respectively." [FlyBase:FBrf0035962, FlyBase:FBrf0068700, FlyBase:FBrf0074012, FlyBase:FBrf0075527, FlyBase:FBrf0167539] comment: Nayak & Singh (1983) claim the ventral cibarial sense organ is composed of two sensilla: the ventral and the dorsal sensilla. In contrast, Montell (2009), Vosshall & Stocker (2007), and Stocker & Schorderet (1981) report three sensilla: the proximal, the middle and the distal sensilla. This is shown via enhancer trap activity in Gendre et al., 1994. Similarly, the number of chemosensory neurons varies: both Nayak & Singh (1983), and Stocker (1994) report 6, whilst Gendre et al., (1994), Montell (2009), and Vosshall & Stocker (2007) report 8. subset: cur ! cur synonym: "VCSO" RELATED [] synonym: "ventral fulcral organ of Hertweck" RELATED [FlyBase:FBrf0075527] is_a: FBbt:00004139 ! cibarial sense organ (Drosophila) relationship: part_of FBbt:00004529 ! posterior plate of cibarium (Drosophila) [Term] id: FBbt:00004146 name: adult labral sense organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "LSO" RELATED [] is_a: FBbt:00004135 ! pharyngeal sense organ (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of UBERON:0005905 ! insect labrum [Term] id: FBbt:00004147 name: mechanosensory labral sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some labrum (FBbt:00004522) and that functions in (some) detection of mechanical stimulus involved in sensory perception (GO:0050974)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005156 ! mechanosensory sensory organ (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of UBERON:0005905 ! insect labrum [Term] id: FBbt:00004148 name: mechanosensory labral sensillum 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004147 ! mechanosensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004149 name: mechanosensory labral sensillum 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004147 ! mechanosensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004150 name: mechanosensory labral sensillum 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004147 ! mechanosensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004151 name: mechanosensory labral sensillum 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004147 ! mechanosensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004152 name: mechanosensory labral sensillum 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004147 ! mechanosensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004153 name: mechanosensory labral sensillum 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004147 ! mechanosensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004154 name: chemosensory labral sensillum 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) is_a: UBERON:0000005 ! chemosensory organ relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004155 name: mechano-chemo-sensory labral sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some labrum (FBbt:00004522) and that functions in (some) detection of chemical stimulus involved in sensory perception (GO:0050907) and that functions in (some) detection of mechanical stimulus involved in sensory perception (GO:0050974)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004147 ! mechanosensory labral sensillum (Drosophila) is_a: UBERON:0000005 ! chemosensory organ relationship: part_of UBERON:0005905 ! insect labrum [Term] id: FBbt:00004156 name: mechano-chemo-sensory labral sensillum 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004155 ! mechano-chemo-sensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004157 name: mechano-chemo-sensory labral sensillum 9 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004155 ! mechano-chemo-sensory labral sensillum (Drosophila) is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of FBbt:00004146 ! adult labral sense organ (Drosophila) [Term] id: FBbt:00004158 name: maxillary palp sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some maxillary palpus (FBbt:00004546)." [FBC:auto_generated_definition, FlyBase:FBrf0042885, FlyBase:FBrf0068700] subset: cur ! cur is_a: FBbt:00004113 ! adult sense organ (Drosophila) relationship: part_of FBbt:00004546 ! maxillary palpus (Drosophila) [Term] id: FBbt:00004159 name: maxillary palp sensillum basiconicum (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory basiconic sensillum of the maxillary palp. The surface of the sensillum is perforated by numerous pores, arranged along a complicated pattern of branched lines, connecting to a lymph space innervated by branched dendrites from two ORNs. These sensilla are located predominantly on the distal half of the dorsal surface and the lateral edge of each maxillary palp." [FlyBase:FBrf0091407, FlyBase:FBrf0128642] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00004158 ! maxillary palp sense organ (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004546 ! maxillary palpus (Drosophila) [Term] id: FBbt:00004160 name: maxillary palp bristle (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007382 def: "Trichoid sensillum of the maxillary palp with an external sensory structure that is anchored in a socket and consists of a small bundle of closely apposed fibers, each of which has grooves running longitudinally. No obvious pores are present." [FlyBase:FBrf0091407] comment: Structure is consistent with these sensilla being mechanosensory rather than chemosensory (Riesgo-Escovar et al., 1997). subset: cur ! cur synonym: "sensillum trichodeum of maxillary palpus" EXACT [] is_a: FBbt:00004158 ! maxillary palp sense organ (Drosophila) is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004158 ! maxillary palp sense organ (Drosophila) relationship: part_of FBbt:00004546 ! maxillary palpus (Drosophila) [Term] id: FBbt:00004161 name: labellum sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some labellum (FBbt:00004531)." [FBC:auto_generated_definition, FlyBase:FBrf0068700] subset: cur ! cur is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00004162 name: labellar taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that is part of some labellum (FBbt:00004531) and that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004161 ! labellum sensillum (Drosophila) is_a: FBbt:00005178 ! taste bristle (Drosophila) relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00004163 name: labellar taste peg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004161 ! labellum sensillum (Drosophila) is_a: UBERON:0003212 ! gustatory organ [Term] id: FBbt:00004164 name: pseudotracheal sensillum (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004532 subset: cur ! cur synonym: "pseudotrachea" EXACT [] is_a: FBbt:00004161 ! labellum sensillum (Drosophila) is_a: FBbt:00007231 ! external sensillum (Drosophila) is_a: UBERON:0000005 ! chemosensory organ relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00004165 name: pseudotracheal taste peg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "pseudotracheal sensillum" RELATED [] is_a: FBbt:00004164 ! pseudotracheal sensillum (Drosophila) [Term] id: FBbt:00004166 name: postoccipital sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some postocciput (FBbt:00004494)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004494 ! postocciput (Drosophila) [Term] id: FBbt:00004167 name: rostral sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some rostral membrane (FBbt:00004498)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004498 ! rostral membrane (Drosophila) [Term] id: FBbt:00004168 name: distal rostral sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004167 ! rostral sensillum (Drosophila) [Term] id: FBbt:00004169 name: proximal rostral sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004167 ! rostral sensillum (Drosophila) [Term] id: FBbt:00004170 name: postgenal sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some postgena (FBbt:00004496)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004496 ! postgena (Drosophila) [Term] id: FBbt:00004172 name: antennal segment 3 sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some third segment of antenna (FBbt:00004515)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007151 ! adult antennal sense organ (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00004173 name: sensillum trichodeum of antennal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory sensillum of antennal segment 3 whose external sensory part is a sharply pointed hair arising from a conspicuous cylindrical base. The walls of the hair are perforated by irregularly distributed pores connecting to a lymph filled lumen containing 1-3 ORN dendrites, unbranched except occasionally near the hair tip." [FlyBase:FBrf0104820, FlyBase:FBrf0128642] comment: Morphology is consistent with these sensilla being olfactory (Shanbhag et al., 1999). This function has been directly confirmed by electrophysiology (Clyne et al., 1997). subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00004174 name: sensillum basiconicum of antennal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum basiconicum (FBbt:00005185) that is part of some third segment of antenna (FBbt:00004515)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00004175 name: large sensillum basiconicum of antennal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Large, blunt tipped, olfactory basiconic sensillum of antennal segment 3. The external sensory structure is perforated by pores, arranged along a complicated pattern of branched lines, that connect to a lymph-filled lumen containing the highly branched dendrites of 2-4 ORNs." [FlyBase:FBrf0104820, FlyBase:FBrf0128642] comment: Morphology is consistent with these sensilla being olfactory (Shanbhag et al., 1999). This function has been directly confirmed by electrophysiology (Clyne et al., 1997). subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00004174 ! sensillum basiconicum of antennal segment 3 (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) is_a: FBbt:00005188 ! large sensillum basiconicum (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00004176 name: small sensillum basiconicum of antennal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Small olfactory basiconic sensillum on antennal segment 3. The surface of the sensillum is perforated by longitudinal rows of pores, connecting to a lymph space innervated by 2 branched olfactory receptor neuron dendrites." [FlyBase:FBrf0104820, FlyBase:FBrf0128642] comment: Morphology is consistent with these sensilla being olfactory (Shanbhag et al., 1999). This function has been directly confirmed by electrophysiology (Clyne et al., 1997). subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00004174 ! sensillum basiconicum of antennal segment 3 (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) is_a: FBbt:00005186 ! small sensillum basiconicum (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00004177 name: sensillum coeloconicum of antennal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory sensillum coeloconicum that is part of antennal segment 3. A short conical peg arising from a broad basal platform, basally smooth but distally having deep longitudinal grooves. The peg has a double cuticular wall. The inner wall encloses a central lumen innervated by olfactory receptor neuron dendrites. Distally, the central lumen is connected to the outer, sensillum lymph-filled chamber by radial spoke channels." [FlyBase:FBrf0104820, FlyBase:FBrf0128642] comment: Morphology is consistent with these sensilla being olfactory (Shanbhag et al., 1999). This function has been directly confirmed by electrophysiology (Clyne et al., 1997). subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) is_a: FBbt:00005190 ! sensillum coeloconicum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00004178 name: Johnston organ (Drosophila) namespace: fly_anatomy.ontology def: "Compound chordotonal organ of antennal segment 2 involved in hearing (Gopfert and Robert, 2002), direction-sensitive wind detection (Yorozu et al., 2009) and gravitaxis (Kamikouchi et al., 2009). The actin-filament rich basal tips of the Johnston's organ scolopidia connect to the inner surface of antennal segment 2, and the apical tips connect to the hook of antennal segment 3 (Gopfert and Robert, 2002). Its sensory neurons (Johnston's organ neurons or JONs) are connected to the Johnston's organ nerve (Kamikouchi et al., 2006), and predominantly innervate the antennal mechanosensory and motor center (AMMC). There are 477 +/- 24 cell bodies, arranged in a bowl shape lying vertically with the 'top' facing the lateral side, and forming a ring around the antennal nerve (Kamikouchi et al., 2006). JONs connecting to opposing sides of the hook are alternatively stimulated by stretching or compression according to the hook's oscillatory movement (Gopfert and Robert, 2002)." [FlyBase:FBrf0147122, FlyBase:FBrf0179481, FlyBase:FBrf0187921, FlyBase:FBrf0194812, FlyBase:FBrf0207559, ISBN:978-3-11-014898-5] comment: Yorozu et al., 2009, identify tonically activated Johnston's organ neurons that respond to forward or reverse deflection of the antenna. Genetic ablation of these neurons inhibits wind-induced behavioural responses without impairing hearing. Further, by expression of tetanus toxin, Kamikouchi et al., 2009, identify the same neuronal population as essential for gravitaxis behaviour. subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "JO" EXACT [FlyBase:FBrf0210248] synonym: "Johnston's organ" EXACT [] synonym: "chordotonal organ of antennal segment 2" RELATED [] is_a: FBbt:00005377 ! antennal segment 2 sense organ (Drosophila) is_a: FBbt:00007234 ! compound sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ relationship: part_of FBbt:00004514 ! second segment of antenna (Drosophila) [Term] id: FBbt:00004179 name: sacculus (Drosophila) namespace: fly_anatomy.ontology def: "A sac-like group of antennal segment 3 sensilla." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00007235 ! external compound sense organ (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00004180 name: grooved sensillum of sacculus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "GS" RELATED [] synonym: "sensillum coeloconicum of sacculus" RELATED [] is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00005191 ! grooved sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004179 ! sacculus (Drosophila) [Term] id: FBbt:00004181 name: grooved sensillum 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "GS1" RELATED [] is_a: FBbt:00004180 ! grooved sensillum of sacculus (Drosophila) [Term] id: FBbt:00004182 name: grooved sensillum 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "GS2" RELATED [] is_a: FBbt:00004180 ! grooved sensillum of sacculus (Drosophila) [Term] id: FBbt:00004183 name: blunt-tipped sensillum of sacculus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00005192 ! blunt-tipped sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004179 ! sacculus (Drosophila) [Term] id: FBbt:00004184 name: basiconic sensillum of sacculus (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum basiconicum (FBbt:00005185) that is part of some sacculus (FBbt:00004179)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004174 ! sensillum basiconicum of antennal segment 3 (Drosophila) relationship: part_of FBbt:00004179 ! sacculus (Drosophila) [Term] id: FBbt:00004185 name: aristal sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum of the arista. There are three of these per arista, each consisting of a pair of sensory neurons surrounded by 2 sheath cells. They project into the lymph space of the arista core, where they float freely - unattached to the epidermis. These projections consist of specialised dendrites surrounded throughout their length by sheath cells and distally by an electron dense dendritic sheath. The three projections terminate at different points along the shaft." [FlyBase:FBrf0049408, FlyBase:FBrf0088919] comment: Foelix et al., 1989, suggest that the morphology of the highly lamellated neurons found in these sensilla is consistent with a thermosensory function based on the similarity of this morphology to that of thermosensory neurons in the antennae of other insects. However, Sayeed and Benzer, 1996, show that surgical removal of the arista has no effect on the temperature preference of flies, but it does eliminate the preference of flies for dry vs moist air, suggesting a hygrosensory function. subset: cur ! cur synonym: "aristal sense organ" EXACT [] is_a: FBbt:00007151 ! adult antennal sense organ (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004519 ! arista (Drosophila) [Term] id: FBbt:00004186 name: neuron of aristal sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of aristal sensillum. Each sensillum contains a pair of sensory dendrites. The outer segment of these dendrites is encased in an electron-dense dendritic sheath and each of the pair has a distinct morphology: one is short and cylindrical proximally, but flattened distally; the other is larger and has a plasma membrane that form 2 interdigitating spiral whorls of lamellae and has periodically arranged electron dense particles protruding from the plasma membrane into the extracellular space (Foelix et al., 1989). The inner-segments of these dendrites are delimited from the outer segments by a ciliary region and are rich in vesicles, mitochondria and ribosomes. The somata sit in a small ganglion near the base of the arista. The axons project via the aristal nerve, which merges with the antennal nerve, and innervate glomeruli VP2 and/or VP3 of the adult antennal lobe. (Stocker et al., 1983)." [FlyBase:FBrf0039019, FlyBase:FBrf0051437, FlyBase:FBrf0137012] comment: Innervation pattern of arista sensory neurons determined by cobalt back-fill (Stocker et al., 1983, Stocker et al., 1990). Foelix et al., 1989, suggest that the morphology of the highly lamellated neurons is consistent with a thermosensory function based on the similarity of this morphology to that of thermosensory neurons in the antennae of other insects. subset: cur ! cur synonym: "neuron of aristal sense organ" RELATED [] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004185 ! aristal sensillum (Drosophila) [Term] id: FBbt:00004187 name: poststernal organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000963 ! head sensillum [Term] id: FBbt:00004188 name: sensillum trichodeum of posternal organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum trichodeum (FBbt:00005184) that is part of some poststernal organ (FBbt:00004187)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) is_a: UBERON:0000963 ! head sensillum relationship: part_of FBbt:00004187 ! poststernal organ (Drosophila) [Term] id: FBbt:00004189 name: ptilinal sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) [Term] id: FBbt:00004190 name: eye sensory structure namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00004191 name: cornea (Drosophila) namespace: fly_anatomy.ontology def: "The transparent cuticular covering of each ommatidium of the eye." [FlyBase:FBrf0064798] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of UBERON:0000207 ! compound eye corneal lens [Term] id: FBbt:00004192 name: corneagenous cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) [Term] id: FBbt:00004194 name: posterior cone cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000306 ! crystallin accumulating cell [Term] id: FBbt:00004195 name: anterior cone cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000306 ! crystallin accumulating cell [Term] id: FBbt:00004196 name: polar cone cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000306 ! crystallin accumulating cell [Term] id: FBbt:00004197 name: equatorial cone cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000306 ! crystallin accumulating cell [Term] id: FBbt:00004198 name: pseudocone (Drosophila) namespace: fly_anatomy.ontology def: "Chamber between the cornea and the apical surface of photoreceptors and cone cells." [FlyBase:FBrf0064798] subset: cur ! cur is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000207 ! compound eye corneal lens [Term] id: FBbt:00004201 name: epipharynx primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 EpiPh" RELATED [FBC:ds555] synonym: "epipharynx specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005538 ! clypeo-labral primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00004202 name: hindgut anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005424 ! hindgut anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00000447 ! posterior endoderm anlage (Drosophila) [Term] id: FBbt:00004203 name: adult clypeo-labral anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A AdCly" RELATED [FBC:ds555] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005538 ! clypeo-labral primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00004204 name: ventral ectoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn/A VenEc" RELATED [FBC:ds555] is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005427 ! ectoderm anlage (Drosophila) [Term] id: FBbt:00004205 name: proximal costal bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005180 ! bract (Drosophila) [Term] id: FBbt:00004206 name: stage namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000001 ! organism comment: This term was obsoleted because, as it refers to no anatomical entity, it does not belong in an anatomy ontology. An organism of indeterminate (or any) stage can be referred to using the term 'organism' (FBbt:00000001). DS071113 subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur [Term] id: FBbt:00004207 name: dorsal margin photoreceptor (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell (FBbt:00006009) that is part of some dorsal margin ommatidium (FBbt:02000000)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00006009 ! eye photoreceptor cell (Drosophila) relationship: part_of FBbt:02000000 ! dorsal margin ommatidium (Drosophila) [Term] id: FBbt:00004209 name: dorsal margin photoreceptor cell R8 (Drosophila) namespace: fly_anatomy.ontology def: "Any photoreceptor cell R8 (FBbt:00004227) that is part of some dorsal margin ommatidium (FBbt:02000000)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004207 ! dorsal margin photoreceptor (Drosophila) is_a: FBbt:00004227 ! photoreceptor cell R8 (Drosophila) relationship: part_of FBbt:02000000 ! dorsal margin ommatidium (Drosophila) [Term] id: FBbt:00004210 name: subretinal glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface glial cell of the adult lamina located in one of the two most distal layers of glial cells of the optic lobe." [FlyBase:FBrf0210316] comment: DISAMBIGUATION: Edwards and Meinertzhagen (2010) argue that the larval subretinal glia are a different cell group to the adult subretinal glial cells, linked only by name. They propose the abolition of the term 'subretinal glial cell' in favour of 2 distinct classes - fenestrated and pseudocartridge glial cells. subset: cur ! cur synonym: "fenestrated-layer glia" RELATED [] synonym: "retinal basal glial cell" RELATED [] synonym: "sub-retinal glial cell" EXACT [] is_a: FBbt:00100500 ! adult surface associated glial cell (Drosophila) is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) [Term] id: FBbt:00004212 name: rhabdomere (Drosophila) namespace: fly_anatomy.ontology def: "The rod-like component of a photoreceptor cell of an ommatidium." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00007251 ! rhabdomeric photoreceptor cell (Drosophila) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00004213 name: photoreceptor cell R1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003710 def: "Outer photoreceptor cell of the adult eye whose rhabdomere is located at the right angle vertex of the longer of the two parallel sides of the trapezoid of rhabdomeres in each ommatidium. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina." [FlyBase:FBrf0049410, FlyBase:FBrf0064798] comment: The name photoreceptor cell R1 is occasionally, mistakenly assumed to refer to any Rh1 (ninaE) expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). subset: cur ! cur synonym: "lamina receptor cell R1" EXACT [] synonym: "receptor cell R1" RELATED [] xref: FlyBrain_NDB:10111 is_a: FBbt:00006007 ! outer photoreceptor cell (Drosophila) [Term] id: FBbt:00004214 name: rhabdomere R1 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R1 (FBbt:00004213)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004213 ! photoreceptor cell R1 (Drosophila) [Term] id: FBbt:00004215 name: photoreceptor cell R2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003711 def: "Outer photoreceptor cell of the adult eye whose rhabdomere is located in the middle of the longer of the two parallel sides of the trapezoid of rhabdomeres in each ommatidium. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina." [FlyBase:FBrf0049410, FlyBase:FBrf0064798] comment: The name photoreceptor cell R2 is occasionally, mistakenly assumed to refer to any Rh2 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). subset: cur ! cur synonym: "lamina receptor cell R2" EXACT [] synonym: "receptor cell R2" RELATED [] xref: FlyBrain_NDB:10111 is_a: FBbt:00006007 ! outer photoreceptor cell (Drosophila) [Term] id: FBbt:00004216 name: rhabdomere R2 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R2 (FBbt:00004215)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004215 ! photoreceptor cell R2 (Drosophila) [Term] id: FBbt:00004217 name: photoreceptor cell R3 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003712 def: "Outer photoreceptor cell of the adult eye whose rhabdomere is located at the non-right angled vertex of the longer of two parallel sides of the trapezoid of rhabdomeres in each ommatidium. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina." [FlyBase:FBrf0049410, FlyBase:FBrf0064798] comment: The name photoreceptor cell R3 is occasionally, mistakenly assumed to refer to any Rh3 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). subset: cur ! cur synonym: "lamina receptor cell R3" EXACT [] synonym: "receptor cell R3" RELATED [] xref: FlyBrain_NDB:10111 is_a: FBbt:00006007 ! outer photoreceptor cell (Drosophila) [Term] id: FBbt:00004218 name: rhabdomere R3 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R3 (FBbt:00004217)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004217 ! photoreceptor cell R3 (Drosophila) [Term] id: FBbt:00004219 name: photoreceptor cell R4 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003713 def: "Outer photoreceptor cell of the adult eye whose rhabdomere is located in the middle of the longer of the two non-parallel sides of trapezoid of rhabdomeres in each ommatidium, in between the rhabdomeres of R3 and R5. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina." [FlyBase:FBrf0049410, FlyBase:FBrf0064798] comment: The name photoreceptor cell R4 is occasionally, mistakenly assumed to refer to any Rh4 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). subset: cur ! cur synonym: "lamina receptor cell R4" EXACT [] synonym: "receptor cell R4" RELATED [] xref: FlyBrain_NDB:10111 is_a: FBbt:00006007 ! outer photoreceptor cell (Drosophila) [Term] id: FBbt:00004220 name: rhabdomere R4 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R4 (FBbt:00004219)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004219 ! photoreceptor cell R4 (Drosophila) [Term] id: FBbt:00004221 name: photoreceptor cell R5 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003714 def: "Outer photoreceptor cell of the adult eye whose rhabdomere is located at a non-right angle vertex of the shorter of the two parallel sides of the trapezoid of rhabdomeres in each ommatidium. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina." [FlyBase:FBrf0049410, FlyBase:FBrf0064798] comment: The name photoreceptor cell R5 is occasionally, mistakenly assumed to refer to any Rh5 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). subset: cur ! cur synonym: "lamina receptor cell R5" EXACT [] synonym: "receptor cell R5" RELATED [] xref: FlyBrain_NDB:10111 is_a: FBbt:00006007 ! outer photoreceptor cell (Drosophila) [Term] id: FBbt:00004222 name: rhabdomere R5 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R5 (FBbt:00004221)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004221 ! photoreceptor cell R5 (Drosophila) [Term] id: FBbt:00004223 name: photoreceptor cell R6 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003715 def: "Outer photoreceptor cell of the adult eye whose rhabdomere is located at the right angle vertex of the shorter of the two parallel sides of the trapezoid of rhabdomeres in each ommatidium. It has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina." [FlyBase:FBrf0049410, FlyBase:FBrf0064798] comment: The name photoreceptor cell R6 is occasionally, mistakenly assumed to refer to any Rh6 expressing photoreceptor cell. This is incorrect. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). subset: cur ! cur synonym: "lamina receptor cell R6" EXACT [] synonym: "receptor cell R6" RELATED [] xref: FlyBrain_NDB:10111 is_a: FBbt:00006007 ! outer photoreceptor cell (Drosophila) [Term] id: FBbt:00004224 name: rhabdomere R6 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R6 (FBbt:00004223)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004223 ! photoreceptor cell R6 (Drosophila) [Term] id: FBbt:00004225 name: photoreceptor cell R7 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003716 def: "Inner photoreceptor cell of the ommatidium whose centrally located rhabdomere extends across the distal two thirds (approximately) of each ommatidium. Each has a single axon that extends through a single lamina optic cartridge without making synapses. This axon crosses the first optic chiasm and extends through a single column of the medulla where it makes pre-synaptic contacts, mainly with medulla layers M1 and M5 (Takemura et al., 2008) before terminating in M6. It also receives synaptic input from photoreceptor cell R8, mostly in M3 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0064798, FlyBase:FBrf0205531] comment: The name photoreceptor cell R7 is occasionally, but mistakenly, assumed to refer to any Rh7 expressing photoreceptor cell. This term only refers to a type of adult eye photoreceptor cell. The name is based simply on the position of the cell and its rhabdomere within each ommatidium - see figure 4 in Wolff and Ready, 1993 (FBrf0064798). subset: cur ! cur synonym: "lamina receptor cell R7" EXACT [] synonym: "receptor cell R7" RELATED [] xref: FlyBrain_NDB:10112 is_a: FBbt:00006008 ! inner photoreceptor cell (Drosophila) [Term] id: FBbt:00004226 name: rhabdomere R7 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R7 (FBbt:00004225)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004225 ! photoreceptor cell R7 (Drosophila) [Term] id: FBbt:00004227 name: photoreceptor cell R8 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003717 def: "Inner photoreceptor cell of the ommatidium whose centrally located rhabdomere extends across the proximal third (approximately) of each ommatidium. Each has a single axon that extends through a single lamina optic cartridge (FBbt:00003747) without making synapses. This axon crosses the first optic chiasm and enters the equivalent column of the medulla, making presynaptic contacts in M1-3 and terminating in M3. Presynaptic contacts in M1 are mainly to lamina monopolar neurons L1 and L5 (Takemura et al., 2008). Presynaptic contacts to photoreceptor R7 are more distal - concentrated in M3 (Takemura et al., 2008)." [FlyBase:FBrf0049410, FlyBase:FBrf0064798, FlyBase:FBrf0205531] comment: Fischbach and Dittrich (1989) suggest there may be two variants of R8, terminating in M3 and M4 respectively. At the time of editing, these had not been reported in other papers, so these terms have been left out for now, as they may represent variation in the population rather than distinct classes. Note, connectivity extrapolated from connectivity in the medulla is extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008), and has, perhaps dangerously, been assumed to apply to all members of this photoreceptor class. subset: cur ! cur synonym: "lamina receptor cell R8" EXACT [] synonym: "receptor cell R8" RELATED [] xref: FlyBrain_NDB:10113 xref: FlyBrain_NDB:10114 is_a: FBbt:00006008 ! inner photoreceptor cell (Drosophila) [Term] id: FBbt:00004228 name: rhabdomere R8 (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some photoreceptor cell R8 (FBbt:00004227)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007455 ! rhabdomere of eye photoreceptor cell (Drosophila) relationship: part_of FBbt:00004227 ! photoreceptor cell R8 (Drosophila) [Term] id: FBbt:00004229 name: mystery cell (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial cell that is part of early ommatidial preclusters but which, unlike the rest of the cells in the precluster, rejoins the surrounding undifferentiated tissue of the eye disc. Mystery cells are usually located between putative R3 and R4 cells." [FlyBase:FBrf0064798] subset: cur ! cur is_a: FBbt:00007108 ! imaginal disc epithelial cell (Drosophila) relationship: part_of FBbt:00007144 ! early ommatidial precursor cluster (Drosophila) [Term] id: FBbt:00004231 name: primary pigment cell (Drosophila) namespace: fly_anatomy.ontology def: "Retinal pigment cell that is part of an ommatidium. Each ommatidium has two primary pigment cells. These cells line the pseudocone and are in contact basally with the cone cells. They contain coarse granules of ommochrome screening pigment. Along with the cone cells, they secrete the lens." [FlyBase:FBrf0064798] subset: cur ! cur is_a: FBbt:00007371 ! retinal pigment cell (Drosophila) relationship: develops_from FBbt:00007370 ! primary pigment cell precursor (Drosophila) relationship: part_of UBERON:0000971 ! ommatidium [Term] id: FBbt:00004232 name: secondary pigment cell (Drosophila) namespace: fly_anatomy.ontology def: "Inter-ommatidial pigment cell that lies between the edges of adjacent ommatidia. It contains the red screening pigment pteridine, as well as ommochrome granules." [FlyBase:FBrf0064798] subset: cur ! cur is_a: FBbt:00007250 ! inter-ommatidial cell (Drosophila) is_a: FBbt:00007371 ! retinal pigment cell (Drosophila) [Term] id: FBbt:00004233 name: tertiary pigment cell (Drosophila) namespace: fly_anatomy.ontology def: "Inter-ommatidial pigment cell that lies between the vertices of adjacent ommatidia. Except at the margins of the eye, vertices alternate between those with tertiary pigment cells and those with bristles. Vertices at the margins all have tertiary pigment cells. These cells contain the red screening pigment pteridine, as well as ommochrome granules." [FlyBase:FBrf0064798] subset: cur ! cur is_a: FBbt:00007250 ! inter-ommatidial cell (Drosophila) is_a: FBbt:00007371 ! retinal pigment cell (Drosophila) [Term] id: FBbt:00004234 name: pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur xref: GO:0048770 is_a: UBERON:0000470 ! cell part [Term] id: FBbt:00004235 name: primary pigment cell pigment granule (Drosophila) namespace: fly_anatomy.ontology def: "Any pigment granule (FBbt:00004234) that is part of some primary pigment cell (FBbt:00004231)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004231 ! primary pigment cell (Drosophila) [Term] id: FBbt:00004236 name: secondary pigment cell pigment granule (Drosophila) namespace: fly_anatomy.ontology def: "Any pigment granule (FBbt:00004234) that is part of some secondary pigment cell (FBbt:00004232)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004232 ! secondary pigment cell (Drosophila) [Term] id: FBbt:00004237 name: tertiary pigment cell pigment granule (Drosophila) namespace: fly_anatomy.ontology def: "Any pigment granule (FBbt:00004234) that is part of some tertiary pigment cell (FBbt:00004233)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004233 ! tertiary pigment cell (Drosophila) [Term] id: FBbt:00004238 name: ocellus sensory structure (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0050358] subset: cur ! cur is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of UBERON:0003161 ! dorsal ocellus [Term] id: FBbt:00004239 name: ocellus cornea (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004238 ! ocellus sensory structure (Drosophila) [Term] id: FBbt:00004240 name: ocellus corneagenous cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004192 ! corneagenous cell (Drosophila) is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004238 ! ocellus sensory structure (Drosophila) [Term] id: FBbt:00004241 name: ocellus lens (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00004238 ! ocellus sensory structure (Drosophila) [Term] id: FBbt:00004242 name: ocellus retinula cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ocellus photoreceptor" RELATED [] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00007251 ! rhabdomeric photoreceptor cell (Drosophila) relationship: part_of FBbt:00004238 ! ocellus sensory structure (Drosophila) [Term] id: FBbt:00004243 name: ocellus rhabdomere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004212 ! rhabdomere (Drosophila) relationship: part_of FBbt:00004242 ! ocellus retinula cell (Drosophila) [Term] id: FBbt:00004244 name: ocellus pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004234 ! pigment granule (Drosophila) relationship: part_of FBbt:00004242 ! ocellus retinula cell (Drosophila) [Term] id: FBbt:00004246 name: leg sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some leg (FBbt:00004640)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000967 ! adult thoracic sensillum relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00004247 name: adult prothoracic sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some adult prothoracic segment (FBbt:00003020)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000967 ! adult thoracic sensillum relationship: part_of FBbt:00003020 ! adult prothoracic segment (Drosophila) [Term] id: FBbt:00004248 name: prothoracic chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Any chordotonal organ (FBbt:00005215) that is part of some prothoracic segment (FBbt:00000017)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0001038 ! chordotonal organ relationship: part_of FBbt:00000017 ! prothoracic segment (Drosophila) [Term] id: FBbt:00004249 name: humeral bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "postpronotal bristle" RELATED [] is_a: FBbt:00004247 ! adult prothoracic sensillum (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004563 ! humeral trabecule (Drosophila) [Term] id: FBbt:00004250 name: upper humeral bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "upper postpronotal bristle" RELATED [] is_a: FBbt:00004249 ! humeral bristle (Drosophila) [Term] id: FBbt:00004251 name: lower humeral bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lower postpronotal bristle" RELATED [] is_a: FBbt:00004249 ! humeral bristle (Drosophila) [Term] id: FBbt:00004252 name: prothoracic leg sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004246 ! leg sensillum (Drosophila) is_a: FBbt:00004247 ! adult prothoracic sensillum (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004253 name: prothoracic leg taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Spine shaped gustatory bristle, between 12-45 micrometres long, found on the prothoracic (1st) leg of the adult. There are approximately 37 of these bristles per female prothoracic leg, and 50 per male prothoracic leg (Stocker 1994)." [FlyBase:FBrf0049501, FlyBase:FBrf0068700] subset: cur ! cur synonym: "1st leg gustatory bristle" RELATED [] synonym: "1st leg taste bristle" RELATED [] synonym: "prothoracic leg gustatory bristle" RELATED [] is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00007409 ! leg taste bristle (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004254 name: sensillum trichodeum of cervical membrane of prothoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004255 name: prothoracic coxal sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004664 ! prothoracic coxa (Drosophila) [Term] id: FBbt:00004256 name: prothoracic coxal sensillum trichodeum St3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004255 ! prothoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004257 name: prothoracic coxal sensillum trichodeum St4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004255 ! prothoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004258 name: prothoracic coxal sensillum trichodeum St8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004255 ! prothoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004259 name: prothoracic coxal bristle on hairy island (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "BH-" RELATED [] is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004664 ! prothoracic coxa (Drosophila) [Term] id: FBbt:00004260 name: prothoracic trochanter sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004666 ! prothoracic trochanter (Drosophila) [Term] id: FBbt:00004261 name: prothoracic trochanter sensillum campaniformium Sc- (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004260 ! prothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004262 name: prothoracic trochanter sensillum campaniformium Sc3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004260 ! prothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004263 name: prothoracic trochanter sensillum campaniformium Sc+5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004260 ! prothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004264 name: prothoracic trochanter sensillum campaniformium Sc13 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Sc-8 + Sc+5" RELATED [] is_a: FBbt:00004260 ! prothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004265 name: prothoracic trochanter sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004666 ! prothoracic trochanter (Drosophila) [Term] id: FBbt:00004266 name: prothoracic trochanter sensillum trichodeum St1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004265 ! prothoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004267 name: prothoracic trochanter sensillum trichodeum St5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004265 ! prothoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004268 name: prothoracic trochanter sensillum trichodeum 2GSt (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004265 ! prothoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004269 name: prothoracic trochanter edge bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004666 ! prothoracic trochanter (Drosophila) [Term] id: FBbt:00004270 name: prothoracic femoral bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005180 ! bract (Drosophila) relationship: part_of FBbt:00004667 ! prothoracic femur (Drosophila) [Term] id: FBbt:00004271 name: prothoracic femoral chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Any chordotonal organ (FBbt:00005215) that is part of some prothoracic femur (FBbt:00004667)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007249 ! adult prothoracic chordotonal organ (Drosophila) is_a: FBbt:00007592 ! femoral chordotonal organ (Drosophila) relationship: part_of FBbt:00004667 ! prothoracic femur (Drosophila) [Term] id: FBbt:00004272 name: prothoracic femoral chordotonal organ 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004271 ! prothoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004273 name: prothoracic femoral chordotonal organ 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004271 ! prothoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004274 name: prothoracic femoral chordotonal organ 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004271 ! prothoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004275 name: prothoracic femoral sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00100297 ! femoral sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004667 ! prothoracic femur (Drosophila) [Term] id: FBbt:00004276 name: prothoracic femoral sensillum campaniformium Sc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004275 ! prothoracic femoral sensillum campaniformium (Drosophila) [Term] id: FBbt:00004277 name: prothoracic femoral sensillum campaniformium Sc11 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004275 ! prothoracic femoral sensillum campaniformium (Drosophila) [Term] id: FBbt:00004278 name: prothoracic tibial bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005180 ! bract (Drosophila) relationship: part_of FBbt:00004665 ! prothoracic tibia (Drosophila) [Term] id: FBbt:00004279 name: prothoracic tibial transverse bristle row (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004665 ! prothoracic tibia (Drosophila) [Term] id: FBbt:00004280 name: prothoracic tibial sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004665 ! prothoracic tibia (Drosophila) [Term] id: FBbt:00004281 name: prothoracic tibial preapical bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004665 ! prothoracic tibia (Drosophila) [Term] id: FBbt:00004282 name: prothoracic tibial apical bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004665 ! prothoracic tibia (Drosophila) [Term] id: FBbt:00004283 name: prothoracic tarsal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004668 ! prothoracic tarsal segment (Drosophila) [Term] id: FBbt:00004284 name: prothoracic tarsal segment 1 central bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004283 ! prothoracic tarsal bristle (Drosophila) [Term] id: FBbt:00004285 name: prothoracic tarsal segment 1 transverse row (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004283 ! prothoracic tarsal bristle (Drosophila) [Term] id: FBbt:00004286 name: prothoracic tarsal bristle longitudinal row (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004283 ! prothoracic tarsal bristle (Drosophila) [Term] id: FBbt:00004287 name: prothoracic tarsal bristle longitudinal row 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004288 name: prothoracic tarsal bristle longitudinal row 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004289 name: prothoracic tarsal bristle longitudinal row 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004290 name: prothoracic tarsal bristle longitudinal row 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004291 name: prothoracic tarsal bristle longitudinal row 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004292 name: prothoracic tarsal bristle longitudinal row 5.5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004293 name: prothoracic tarsal bristle longitudinal row 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004294 name: prothoracic tarsal bristle longitudinal row 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004295 name: prothoracic tarsal bristle longitudinal row 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004286 ! prothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004296 name: sex comb (Drosophila) namespace: fly_anatomy.ontology def: "Male specific chaetae located on the prothoracic tarsal segment of the prothoracic leg." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "metatarsal comb" RELATED [] is_a: FBbt:00004252 ! prothoracic leg sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) relationship: part_of FBbt:00007020 ! metatarsus of male prothoracic leg (Drosophila) [Term] id: FBbt:00004297 name: adult mesothoracic sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some adult mesothoracic segment (FBbt:00003021)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000967 ! adult thoracic sensillum relationship: part_of FBbt:00003021 ! adult mesothoracic segment (Drosophila) [Term] id: FBbt:00004298 name: mesothoracic bristle (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that is part of some adult mesothoracic segment (FBbt:00003021)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004297 ! adult mesothoracic sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) relationship: part_of FBbt:00003021 ! adult mesothoracic segment (Drosophila) [Term] id: FBbt:00004299 name: presutural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004582 ! prescutum (Drosophila) [Term] id: FBbt:00004300 name: notopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004582 ! prescutum (Drosophila) [Term] id: FBbt:00004301 name: anterior notopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004300 ! notopleural bristle (Drosophila) [Term] id: FBbt:00004302 name: posterior notopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004300 ! notopleural bristle (Drosophila) [Term] id: FBbt:00004303 name: supraalar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004583 ! scutum (Drosophila) [Term] id: FBbt:00004304 name: anterior supraalar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004303 ! supraalar bristle (Drosophila) [Term] id: FBbt:00004305 name: posterior supraalar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004303 ! supraalar bristle (Drosophila) [Term] id: FBbt:00004306 name: dorsocentral bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004583 ! scutum (Drosophila) [Term] id: FBbt:00004307 name: anterior dorsocentral bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004306 ! dorsocentral bristle (Drosophila) [Term] id: FBbt:00004308 name: posterior dorsocentral bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004306 ! dorsocentral bristle (Drosophila) [Term] id: FBbt:00004309 name: postalar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004583 ! scutum (Drosophila) [Term] id: FBbt:00004310 name: anterior postalar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004309 ! postalar bristle (Drosophila) [Term] id: FBbt:00004311 name: posterior postalar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "apical scutellar bristle" RELATED [] is_a: FBbt:00004309 ! postalar bristle (Drosophila) [Term] id: FBbt:00004312 name: scutellar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004587 ! scutellum (Drosophila) [Term] id: FBbt:00004313 name: anterior scutellar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004312 ! scutellar bristle (Drosophila) [Term] id: FBbt:00004314 name: posterior scutellar bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004312 ! scutellar bristle (Drosophila) [Term] id: FBbt:00004315 name: sternopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004598 ! mesothoracic preepisternum (Drosophila) [Term] id: FBbt:00004316 name: anterior sternopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004315 ! sternopleural bristle (Drosophila) [Term] id: FBbt:00004317 name: middle sternopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004315 ! sternopleural bristle (Drosophila) [Term] id: FBbt:00004318 name: posterior sternopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004315 ! sternopleural bristle (Drosophila) [Term] id: FBbt:00004319 name: ventral sternopleural bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004315 ! sternopleural bristle (Drosophila) [Term] id: FBbt:00004320 name: acrostichal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) relationship: part_of FBbt:00004578 ! adult external mesothorax (Drosophila) [Term] id: FBbt:00004321 name: katepisternal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "sternal bristle" RELATED [] is_a: FBbt:00005177 ! chaeta (Drosophila) is_a: UBERON:0000967 ! adult thoracic sensillum relationship: part_of FBbt:00004599 ! katepisternum (Drosophila) [Term] id: FBbt:00004322 name: notal sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "APAst2" RELATED [] is_a: FBbt:00004297 ! adult mesothoracic sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004323 name: wing sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some wing (FBbt:00004729)." [FBC:auto_generated_definition, FlyBase:FBrf0038304, FlyBase:FBrf0068700] subset: cur ! cur is_a: FBbt:00004297 ! adult mesothoracic sensillum (Drosophila) relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00004324 name: chordotonal organ of wing (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00004325 name: anterior notal wing process sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ANWP" RELATED [] is_a: FBbt:00004297 ! adult mesothoracic sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004585 ! anterior notal wing process (Drosophila) [Term] id: FBbt:00004326 name: wing margin bristle (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that is part of some wing margin (FBbt:00005378)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004323 ! wing sensillum (Drosophila) relationship: part_of FBbt:00005378 ! wing margin (Drosophila) [Term] id: FBbt:00004327 name: triple row (Drosophila) namespace: fly_anatomy.ontology def: "Three rows of sensilla proximally located on the anterior wing margin. The boundary between the triple row and the double row is a short distance distal of the point where the second longitudinal vein merges with the wing margin." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur is_a: FBbt:00100155 ! array of sensilla rows (Drosophila) relationship: part_of FBbt:00005378 ! wing margin (Drosophila) [Term] id: FBbt:00004328 name: double row (Drosophila) namespace: fly_anatomy.ontology def: "Two rows of sensilla located towards the distal end of the anterior wing margin. The boundary between the triple row and the double row is a short distance distal of the point where the second longitudinal vein merges with the wing margin." [FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur is_a: FBbt:00100155 ! array of sensilla rows (Drosophila) relationship: part_of FBbt:00005378 ! wing margin (Drosophila) [Term] id: FBbt:00004329 name: dorsal row (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal row consists of all of the wing margin bristles on the dorsal side of the wing: the medial and dorsal components of the triple row and the dorsal component of the double row." [FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur synonym: "DR" RELATED [] is_a: FBbt:00100155 ! array of sensilla rows (Drosophila) relationship: part_of FBbt:00005378 ! wing margin (Drosophila) relationship: part_of FBbt:00007165 ! dorsal wing blade (Drosophila) [Term] id: FBbt:00004330 name: dorsal triple row (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most row of the triple row. It is composed of multiply innervated, recurved chemosensory bristles, with females having approximately 23 and males approximately 22 (Hartenstein and Posakony, 1989)." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur synonym: "dTR" RELATED [] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00004327 ! triple row (Drosophila) relationship: part_of FBbt:00004329 ! dorsal row (Drosophila) [Term] id: FBbt:00004331 name: medial triple row (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most sensilla row of the triple row. It is composed of approximately 80 (for males) and 86 (females) stout, singly innervated mechanosensory bristles (Hartenstein and Posakony, 1989)." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur synonym: "mTR" RELATED [] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00004327 ! triple row (Drosophila) relationship: part_of FBbt:00004329 ! dorsal row (Drosophila) [Term] id: FBbt:00004332 name: dorsal double row (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal component of the double row, consisting of two sensillum types: slender, singly-innervated mechanosensory bristles and multiply-innervated, recurved bristles that are involved in chemosensation." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur synonym: "dDR" RELATED [] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00004328 ! double row (Drosophila) [Term] id: FBbt:00004333 name: ventral row (Drosophila) namespace: fly_anatomy.ontology def: "Single row of sensilla anteriorly located on the ventral aspect of the wing margin. It is composed of approximately 77-79 (for males/females) singly innervated, stout mechanosensory bristles interspersed with approximately 17-20 recurved, multiply innervated chemosensory bristles (Hartenstein and Posakony, 1989)." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur synonym: "VR" RELATED [] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00005378 ! wing margin (Drosophila) relationship: part_of FBbt:00007166 ! ventral wing blade (Drosophila) [Term] id: FBbt:00004334 name: ventral triple row (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most row of the triple row bristles composed of approximately 77-79 singly innervated, slender mechanosensory bristles interspersed with approximately 17-20 multiply innervated, recurved chemosensory bristles (Hartenstein and Posakony, 1989)." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur synonym: "vTR" RELATED [] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00004327 ! triple row (Drosophila) relationship: part_of FBbt:00004333 ! ventral row (Drosophila) [Term] id: FBbt:00004335 name: chemosensory ventral triple row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Multiply innervated, recurved taste bristle of the ventral triple row and the ventral row. This bristle also shows a conspicuous terminal pore." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: Palka et al., (1979) show that of the five dendrites innervating the wing margin chemosensory bristles, one contains a microtubular body, suggesting it to be a mechanosensory neuron. That this bristle is chemosensory in nature is based on the presence of the terminal pore and multiple innervation with dendrites extending to the pore (Palka et al., 1979). subset: cur ! cur synonym: "recurved, polyinnervated, chemosensory bristle" RELATED [] synonym: "vTR" RELATED [] synonym: "ventral triple row chemosensory bristle" RELATED [] is_a: FBbt:00005178 ! taste bristle (Drosophila) is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) is_a: FBbt:00100106 ! ventral triple row bristle (Drosophila) relationship: part_of FBbt:00004334 ! ventral triple row (Drosophila) [Term] id: FBbt:00004336 name: mechanosensory ventral triple row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Slender, singly innervated mechanosensory bristle of the ventral triple row." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: That this bristle is mechanosensory is primarily based on the presence of a characteristic microtubular body present in the single innervating neuron (Palka et al., 1979). subset: cur ! cur synonym: "slender, mechanosensory, singly innervated bristle" RELATED [] synonym: "vTR" RELATED [] synonym: "ventral triple row mechanosensory bristle" RELATED [] is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) is_a: FBbt:00100106 ! ventral triple row bristle (Drosophila) relationship: part_of FBbt:00004334 ! ventral triple row (Drosophila) [Term] id: FBbt:00004337 name: ventral double row (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most row of the double row bristles composed of singly-innervated mechanosensory bristles and multiply-innervated chemosensory bristles." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: The pattern of adult sensilla on the anterior wing margin is graphically depicted in figure 2A of Hartenstein and Posakony (1989). subset: cur ! cur synonym: "vDR" RELATED [] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00004328 ! double row (Drosophila) relationship: part_of FBbt:00004333 ! ventral row (Drosophila) [Term] id: FBbt:00004338 name: twin sensillum of margin 1 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004081 def: "One of two large bristle sensilla at the most distal point of the wing margin of the distal costa. It is innervated by the first born of the twin sensilla neurons." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "TM1" RELATED [] synonym: "TSM" RELATED [] synonym: "TSM(1)" RELATED [] synonym: "TSM1" RELATED [] synonym: "wing nerve TSM(1)" EXACT [] is_a: FBbt:00004326 ! wing margin bristle (Drosophila) relationship: part_of FBbt:00005378 ! wing margin (Drosophila) [Term] id: FBbt:00004339 name: twin sensillum of margin 2 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004082 def: "One of two large bristle sensilla at the most distal point of the wing margin of the distal costa. It is innervated by the second born of the twin sensilla neurons (Murray et al., 1984)." [FlyBase:FBrf0040724] subset: cur ! cur synonym: "TM2" RELATED [] synonym: "wing nerve TSM(2)" EXACT [] is_a: FBbt:00004326 ! wing margin bristle (Drosophila) relationship: part_of FBbt:00005378 ! wing margin (Drosophila) [Term] id: FBbt:00004340 name: wing hair (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "wing trichome" RELATED [] is_a: FBbt:00004979 ! trichome (Drosophila) relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00004342 name: trichome of the posterior wing margin (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004341 subset: cur ! cur synonym: "posterior hair" RELATED [] synonym: "posterior row hair" RELATED [] is_a: FBbt:00004340 ! wing hair (Drosophila) relationship: part_of FBbt:00027001 ! posterior wing margin (Drosophila) [Term] id: FBbt:00004343 name: sensillum campaniformium of proximal dorsal radius (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004759 ! wing vein L1 (Drosophila) [Term] id: FBbt:00004344 name: sensillum campaniformium of dorsal radius Sc4d (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "d.Rad.A" RELATED [] is_a: FBbt:00004343 ! sensillum campaniformium of proximal dorsal radius (Drosophila) [Term] id: FBbt:00004345 name: sensillum campaniformium of dorsal radius Sc25 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "d.Rad.B" RELATED [] is_a: FBbt:00004343 ! sensillum campaniformium of proximal dorsal radius (Drosophila) [Term] id: FBbt:00004346 name: sensillum campaniformium of dorsal radius Sc12 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "d.Rad.D + d.Rad.E" RELATED [] is_a: FBbt:00004343 ! sensillum campaniformium of proximal dorsal radius (Drosophila) [Term] id: FBbt:00004347 name: sensillum campaniformium of dorsal radius Sc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "GSR" RELATED [] synonym: "giant sensillum of radius" RELATED [] is_a: FBbt:00004343 ! sensillum campaniformium of proximal dorsal radius (Drosophila) [Term] id: FBbt:00004348 name: sensillum campaniformium of proximal ventral radius (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00004349 name: sensillum campaniformium of ventral radius Sc4vm (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "v.Rad.A" RELATED [] is_a: FBbt:00004348 ! sensillum campaniformium of proximal ventral radius (Drosophila) [Term] id: FBbt:00004350 name: sensillum campaniformium of ventral radius Sc3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "v.Rad.B" RELATED [] is_a: FBbt:00004348 ! sensillum campaniformium of proximal ventral radius (Drosophila) [Term] id: FBbt:00004351 name: sensillum campaniformium of ventral radius Sc5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "v.Rad.C" RELATED [] is_a: FBbt:00004348 ! sensillum campaniformium of proximal ventral radius (Drosophila) [Term] id: FBbt:00004352 name: sensillum campaniformium of dorsal radius (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00004353 name: proximal sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "L3-1" RELATED [] is_a: FBbt:00004352 ! sensillum campaniformium of dorsal radius (Drosophila) [Term] id: FBbt:00004354 name: middle sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "L3-2" RELATED [] is_a: FBbt:00004352 ! sensillum campaniformium of dorsal radius (Drosophila) [Term] id: FBbt:00004355 name: distal sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "L3-3" RELATED [] is_a: FBbt:00004352 ! sensillum campaniformium of dorsal radius (Drosophila) [Term] id: FBbt:00004356 name: sensillum campaniformium of anterior crossvein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ACV" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004767 ! anterior crossvein (Drosophila) [Term] id: FBbt:00004357 name: dorsal humeral crossvein sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "d.HCV" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004766 ! humeral crossvein (Drosophila) [Term] id: FBbt:00004358 name: ventral humeral crossvein sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "v.HCV" RELATED [] is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004766 ! humeral crossvein (Drosophila) [Term] id: FBbt:00004359 name: tegula sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004730 ! tegula (Drosophila) [Term] id: FBbt:00004360 name: peripheral tegula sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004323 ! wing sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004730 ! tegula (Drosophila) [Term] id: FBbt:00004361 name: chordotonal organ of tegula (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ relationship: part_of FBbt:00004730 ! tegula (Drosophila) [Term] id: FBbt:00004362 name: mesothoracic leg sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004246 ! leg sensillum (Drosophila) is_a: FBbt:00004297 ! adult mesothoracic sensillum (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004363 name: mesothoracic leg taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Spine shaped gustatory bristle, between 12-45 micrometres long, found on the mesothoracic (2nd) leg of the adult. There are approximately 30 of these bristles per mesothoracic leg." [FlyBase:FBrf0049501, FlyBase:FBrf0068700] subset: cur ! cur synonym: "2nd leg gustatory bristle" RELATED [] synonym: "2nd leg taste bristle" RELATED [] synonym: "mesothoracic leg gustatory bristle" RELATED [] is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00007409 ! leg taste bristle (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004364 name: mesothoracic coxal sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004686 ! mesothoracic coxa (Drosophila) [Term] id: FBbt:00004365 name: mesothoracic coxal sensillum trichodeum St3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004364 ! mesothoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004366 name: mesothoracic coxal sensillum trichodeum St4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004364 ! mesothoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004367 name: mesothoracic coxal sensillum trichodeum St8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004364 ! mesothoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004368 name: mesothoracic coxal bristle on hairy island (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "BH-" RELATED [] is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004686 ! mesothoracic coxa (Drosophila) [Term] id: FBbt:00004369 name: mesothoracic trochanter sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004688 ! mesothoracic trochanter (Drosophila) [Term] id: FBbt:00004370 name: mesothoracic trochanter sensillum campaniformium Sc- (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004369 ! mesothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004371 name: mesothoracic trochanter sensillum campaniformium Sc3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004369 ! mesothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004372 name: mesothoracic trochanter sensillum campaniformium Sc+5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004369 ! mesothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004373 name: mesothoracic trochanter sensillum campaniformium Sc13 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Sc-8 + Sc+5" RELATED [] is_a: FBbt:00004369 ! mesothoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004374 name: mesothoracic trochanter sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004688 ! mesothoracic trochanter (Drosophila) [Term] id: FBbt:00004375 name: mesothoracic trochanter sensillum trichodeum St1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004374 ! mesothoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004376 name: mesothoracic trochanter sensillum trichodeum St5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004374 ! mesothoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004377 name: mesothoracic trochanter sensillum trichodeum 2GSt (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004374 ! mesothoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004378 name: mesothoracic trochanter edge bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004688 ! mesothoracic trochanter (Drosophila) [Term] id: FBbt:00004379 name: mesothoracic femoral bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005180 ! bract (Drosophila) relationship: part_of FBbt:00004689 ! mesothoracic femur (Drosophila) [Term] id: FBbt:00004380 name: mesothoracic femoral chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Any chordotonal organ (FBbt:00005215) that is part of some mesothoracic femur (FBbt:00004689)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007592 ! femoral chordotonal organ (Drosophila) relationship: part_of FBbt:00004689 ! mesothoracic femur (Drosophila) [Term] id: FBbt:00004381 name: mesothoracic femoral chordotonal organ 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004380 ! mesothoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004382 name: mesothoracic femoral chordotonal organ 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004380 ! mesothoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004383 name: mesothoracic femoral chordotonal organ 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004380 ! mesothoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004384 name: mesothoracic femoral sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00100297 ! femoral sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004689 ! mesothoracic femur (Drosophila) [Term] id: FBbt:00004385 name: mesothoracic femoral sensillum campaniformium Sc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004384 ! mesothoracic femoral sensillum campaniformium (Drosophila) [Term] id: FBbt:00004386 name: mesothoracic femoral sensillum campaniformium Sc11 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004384 ! mesothoracic femoral sensillum campaniformium (Drosophila) [Term] id: FBbt:00004387 name: mesothoracic tibial bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005180 ! bract (Drosophila) relationship: part_of FBbt:00004687 ! mesothoracic tibia (Drosophila) [Term] id: FBbt:00004388 name: mesothoracic tibial transverse bristle row (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004687 ! mesothoracic tibia (Drosophila) [Term] id: FBbt:00004389 name: mesothoracic tibial spur bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005179 ! macrochaeta (Drosophila) relationship: part_of FBbt:00004687 ! mesothoracic tibia (Drosophila) [Term] id: FBbt:00004390 name: mesothoracic tibial sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004687 ! mesothoracic tibia (Drosophila) [Term] id: FBbt:00004391 name: mesothoracic tibial preapical bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004687 ! mesothoracic tibia (Drosophila) [Term] id: FBbt:00004392 name: mesothoracic tibial apical bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004687 ! mesothoracic tibia (Drosophila) [Term] id: FBbt:00004393 name: mesothoracic tarsal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004298 ! mesothoracic bristle (Drosophila) is_a: FBbt:00004362 ! mesothoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004690 ! mesothoracic tarsal segment (Drosophila) [Term] id: FBbt:00004394 name: mesothoracic tarsal bristle longitudinal row (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004393 ! mesothoracic tarsal bristle (Drosophila) [Term] id: FBbt:00004395 name: mesothoracic tarsal bristle longitudinal row 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004396 name: mesothoracic tarsal bristle longitudinal row 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004397 name: mesothoracic tarsal bristle longitudinal row 2.5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004398 name: mesothoracic tarsal bristle longitudinal row 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004399 name: mesothoracic tarsal bristle longitudinal row 3.5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004400 name: mesothoracic tarsal bristle longitudinal row 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004401 name: mesothoracic tarsal bristle longitudinal row 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004402 name: mesothoracic tarsal bristle longitudinal row 5.5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004403 name: mesothoracic tarsal bristle longitudinal row 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004404 name: mesothoracic tarsal bristle longitudinal row 6.5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004405 name: mesothoracic tarsal bristle longitudinal row 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004406 name: mesothoracic tarsal bristle longitudinal row 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004394 ! mesothoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004407 name: adult metathoracic sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some adult metathoracic segment (FBbt:00003022)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000967 ! adult thoracic sensillum relationship: part_of FBbt:00003022 ! adult metathoracic segment (Drosophila) [Term] id: FBbt:00004408 name: metathoracic bristle (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that is part of some adult metathoracic segment (FBbt:00003022)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004407 ! adult metathoracic sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) relationship: part_of FBbt:00003022 ! adult metathoracic segment (Drosophila) [Term] id: FBbt:00004409 name: metathoracic papillae (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004407 ! adult metathoracic sensillum (Drosophila) [Term] id: FBbt:00004410 name: haltere sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some haltere (FBbt:00004783)." [FBC:auto_generated_definition, FlyBase:FBrf0038304] subset: cur ! cur is_a: FBbt:00004407 ! adult metathoracic sensillum (Drosophila) relationship: part_of UBERON:0000987 ! haltere [Term] id: FBbt:00004411 name: chordotonal organ of scabellum (Drosophila) namespace: fly_anatomy.ontology def: "Any chordotonal organ (FBbt:00005215) that is part of some scabellum (FBbt:00004786)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ relationship: part_of FBbt:00004786 ! scabellum (Drosophila) [Term] id: FBbt:00004412 name: small chordotonal organ of scabellum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004411 ! chordotonal organ of scabellum (Drosophila) relationship: part_of FBbt:00004786 ! scabellum (Drosophila) [Term] id: FBbt:00004413 name: large chordotonal organ of scabellum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004411 ! chordotonal organ of scabellum (Drosophila) relationship: part_of FBbt:00004786 ! scabellum (Drosophila) [Term] id: FBbt:00004414 name: capitella sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004410 ! haltere sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004784 ! capitellum (Drosophila) [Term] id: FBbt:00004415 name: dorsal pedicellar sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "d.Ped" RELATED [] is_a: FBbt:00004410 ! haltere sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004785 ! haltere pedicel (Drosophila) [Term] id: FBbt:00004416 name: ventral pedicellar sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "v.Ped" RELATED [] is_a: FBbt:00004410 ! haltere sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004785 ! haltere pedicel (Drosophila) [Term] id: FBbt:00004417 name: pedicellar brush (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:ma] comment: There seems to be some doubt as to the reality of these. subset: cur ! cur is_a: FBbt:00004410 ! haltere sensillum (Drosophila) relationship: part_of FBbt:00004785 ! haltere pedicel (Drosophila) [Term] id: FBbt:00004418 name: ventral scabellar sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "v.Scab" RELATED [] is_a: FBbt:00004410 ! haltere sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004786 ! scabellum (Drosophila) [Term] id: FBbt:00004419 name: dorsal scabellar sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "d.Scab" RELATED [] is_a: FBbt:00004410 ! haltere sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004786 ! scabellum (Drosophila) [Term] id: FBbt:00004420 name: metathoracic leg sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004246 ! leg sensillum (Drosophila) is_a: FBbt:00004407 ! adult metathoracic sensillum (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004421 name: metathoracic leg taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Spine shaped gustatory bristle, between 12-45 micrometres long, found on the metathoracic (3rd) leg of the adult. There are approximately 31-32 of these bristles per metathoracic leg." [FlyBase:FBrf0049501, FlyBase:FBrf0068700] subset: cur ! cur synonym: "3rd leg gustatory bristle" RELATED [] synonym: "3rd leg taste bristle" RELATED [] synonym: "metathoracic leg gustatory bristle" RELATED [] is_a: FBbt:00004408 ! metathoracic bristle (Drosophila) is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00007409 ! leg taste bristle (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004422 name: metathoracic coxal sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004708 ! metathoracic coxa (Drosophila) [Term] id: FBbt:00004423 name: metathoracic coxal sensillum trichodeum St3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004422 ! metathoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004424 name: metathoracic coxal sensillum trichodeum St4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004422 ! metathoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004425 name: metathoracic coxal sensillum trichodeum St8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004422 ! metathoracic coxal sensillum trichodeum (Drosophila) [Term] id: FBbt:00004426 name: metathoracic coxal bristle on hairy island (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "BH-" RELATED [] is_a: FBbt:00004408 ! metathoracic bristle (Drosophila) is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004708 ! metathoracic coxa (Drosophila) [Term] id: FBbt:00004427 name: metathoracic trochanter sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004710 ! metathoracic trochanter (Drosophila) [Term] id: FBbt:00004428 name: metathoracic trochanter sensillum campaniformium Sc- (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004427 ! metathoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004429 name: metathoracic trochanter sensillum campaniformium Sc3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004427 ! metathoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004430 name: metathoracic trochanter sensillum campaniformium Sc+5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004427 ! metathoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004431 name: metathoracic trochanter sensillum campaniformium Sc13 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Sc-8 + Sc+5" RELATED [] is_a: FBbt:00004427 ! metathoracic trochanter sensillum campaniformium (Drosophila) [Term] id: FBbt:00004432 name: metathoracic trochanter sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004710 ! metathoracic trochanter (Drosophila) [Term] id: FBbt:00004433 name: metathoracic trochanter sensillum trichodeum St1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004432 ! metathoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004434 name: metathoracic trochanter sensillum trichodeum St5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004432 ! metathoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004435 name: metathoracic trochanter sensillum trichodeum 2GSt (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004432 ! metathoracic trochanter sensillum trichodeum (Drosophila) [Term] id: FBbt:00004436 name: metathoracic trochanter edge bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004408 ! metathoracic bristle (Drosophila) is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004710 ! metathoracic trochanter (Drosophila) [Term] id: FBbt:00004437 name: metathoracic femoral bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005180 ! bract (Drosophila) relationship: part_of FBbt:00004711 ! metathoracic femur (Drosophila) [Term] id: FBbt:00004438 name: metathoracic femoral chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Any chordotonal organ (FBbt:00005215) that is part of some metathoracic femur (FBbt:00004711)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007592 ! femoral chordotonal organ (Drosophila) relationship: part_of FBbt:00004711 ! metathoracic femur (Drosophila) [Term] id: FBbt:00004439 name: metathoracic femoral chordotonal organ 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004438 ! metathoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004440 name: metathoracic femoral chordotonal organ 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004438 ! metathoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004441 name: metathoracic femoral chordotonal organ 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004438 ! metathoracic femoral chordotonal organ (Drosophila) [Term] id: FBbt:00004442 name: metathoracic femoral sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00100297 ! femoral sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004711 ! metathoracic femur (Drosophila) [Term] id: FBbt:00004443 name: metathoracic femoral sensillum campaniformium Sc1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004442 ! metathoracic femoral sensillum campaniformium (Drosophila) [Term] id: FBbt:00004444 name: metathoracic femoral sensillum campaniformium Sc11 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004442 ! metathoracic femoral sensillum campaniformium (Drosophila) [Term] id: FBbt:00004445 name: metathoracic tibial bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005180 ! bract (Drosophila) relationship: part_of FBbt:00004709 ! metathoracic tibia (Drosophila) [Term] id: FBbt:00004446 name: metathoracic tibial transverse bristle row (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004408 ! metathoracic bristle (Drosophila) is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004709 ! metathoracic tibia (Drosophila) [Term] id: FBbt:00004447 name: metathoracic tibial sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004709 ! metathoracic tibia (Drosophila) [Term] id: FBbt:00004448 name: metathoracic tibial preapical bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004408 ! metathoracic bristle (Drosophila) is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004709 ! metathoracic tibia (Drosophila) [Term] id: FBbt:00004449 name: dorsal margin photoreceptor cell R7 (Drosophila) namespace: fly_anatomy.ontology def: "Any photoreceptor cell R7 (FBbt:00004225) that is part of some dorsal margin ommatidium (FBbt:02000000)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004207 ! dorsal margin photoreceptor (Drosophila) is_a: FBbt:00004225 ! photoreceptor cell R7 (Drosophila) relationship: part_of FBbt:02000000 ! dorsal margin ommatidium (Drosophila) [Term] id: FBbt:00004450 name: late extended germ band embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 11 and 12." [FBC:DOS] subset: cur ! cur is_a: FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: develops_from FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00004451 name: metathoracic tarsal bristle transverse row 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:01004450 ! metathoracic tarsal bristle (Drosophila) [Term] id: FBbt:00004452 name: metathoracic tarsal bristle longitudinal row (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:01004450 ! metathoracic tarsal bristle (Drosophila) [Term] id: FBbt:00004453 name: metathoracic tarsal bristle longitudinal row 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004454 name: metathoracic tarsal bristle longitudinal row 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004455 name: metathoracic tarsal bristle longitudinal row 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004456 name: metathoracic tarsal bristle longitudinal row 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004457 name: metathoracic tarsal bristle longitudinal row 5.5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004458 name: metathoracic tarsal bristle longitudinal row 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004459 name: metathoracic tarsal bristle longitudinal row 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004460 name: metathoracic tarsal bristle longitudinal row 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004452 ! metathoracic tarsal bristle longitudinal row (Drosophila) [Term] id: FBbt:00004462 name: abdominal tergite marginal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005182 ! microchaeta (Drosophila) is_a: UBERON:0000968 ! adult abdominal sensillum relationship: part_of FBbt:00004476 ! tergite (Drosophila) [Term] id: FBbt:00004463 name: abdominal sternite bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005182 ! microchaeta (Drosophila) is_a: UBERON:0000968 ! adult abdominal sensillum relationship: part_of FBbt:00004477 ! sternite (Drosophila) [Term] id: FBbt:00004464 name: chordotonal organ of sternite 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ relationship: part_of FBbt:00004477 ! sternite (Drosophila) [Term] id: FBbt:00004465 name: female terminalia sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some female terminalia (FBbt:00004830)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000968 ! adult abdominal sensillum relationship: part_of FBbt:00004830 ! female terminalia (Drosophila) [Term] id: FBbt:00004466 name: gonopod thorn bristle (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0050360, FlyBase:FBrf0068700, FlyBase:FBrf0204415] comment: Note: currently there is no direct evidence that these neurons are definitely chemosensory. That they are likely to be chemosensory in nature is based on their morphology (Taylor, 1989), that they are multiply innervated (Taylor, 1989), and behavioural observations of the animals during egg laying (Yang et al., 2008). subset: cur ! cur is_a: FBbt:00004465 ! female terminalia sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) is_a: UBERON:0000005 ! chemosensory organ relationship: part_of FBbt:00004832 ! female gonopod (Drosophila) [Term] id: FBbt:00004467 name: gonopod long bristle (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0050360, FlyBase:FBrf0068700, FlyBase:FBrf0204415] comment: Note: currently there is no direct evidence that these neurons are definitely chemosensory. That they are likely to be chemosensory in nature is based on their morphology (Taylor, 1989), that they are multiply innervated (Taylor, 1989), and behavioural observations of the animals during egg laying (Yang et al., 2008). subset: cur ! cur synonym: "gonopod spine bristle" EXACT [] is_a: FBbt:00004465 ! female terminalia sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) is_a: UBERON:0000005 ! chemosensory organ relationship: part_of FBbt:00004832 ! female gonopod (Drosophila) [Term] id: FBbt:00004468 name: gonopod sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004465 ! female terminalia sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00004832 ! female gonopod (Drosophila) [Term] id: FBbt:00004469 name: male terminalia sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some male terminalia (FBbt:00004835)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000968 ! adult abdominal sensillum relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004470 name: clasper tooth (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "prensisetae" RELATED [] is_a: FBbt:00004469 ! male terminalia sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004471 name: clasper long bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004469 ! male terminalia sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) relationship: part_of FBbt:00004843 ! clasper (Drosophila) [Term] id: FBbt:00004472 name: hypandrial bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004469 ! male terminalia sensillum (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) relationship: part_of FBbt:00004847 ! hypandrium (Drosophila) [Term] id: FBbt:00004473 name: hypandrial hair (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004979 ! trichome (Drosophila) relationship: part_of FBbt:00004847 ! hypandrium (Drosophila) relationship: part_of FBbt:00004992 ! adult cuticle (Drosophila) [Term] id: FBbt:00004475 name: sclerite (Drosophila) namespace: fly_anatomy.ontology def: "A region of integument whose external cuticular part is a hard, sclerotized plate." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "plate" RELATED [] is_a: FBbt:00007284 ! region of integument (Drosophila) relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004476 name: tergite (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004789 def: "The dorsal plate (sclerite) of an adult abdominal segment." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "abdominal tergite" EXACT [] is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: develops_from FBbt:00001792 ! anterior dorsal histoblast nest abdominal (Drosophila) relationship: develops_from FBbt:00001809 ! posterior dorsal histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00004788 ! adult external abdomen (Drosophila) [Term] id: FBbt:00004477 name: sternite (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004798 def: "The adult external sclerite that straddles the ventral midline of a single abdominal segment." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "abdominal sternite" EXACT [] is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: develops_from FBbt:00001818 ! ventral histoblast nest abdominal (Drosophila) relationship: develops_from FBbt:00001826 ! spiracular histoblast nest abdominal (Drosophila) relationship: part_of FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00004788 ! adult external abdomen (Drosophila) [Term] id: FBbt:00004478 name: foramen (Drosophila) namespace: fly_anatomy.ontology def: "An aperture in some gross body part. Most commonly used for apertures in the exoskeleton, but also used for internal structures such as the esophageal foramen of the brain." [FBC:DOS&SR, FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0000464 ! anatomical space relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004479 name: suture (Drosophila) namespace: fly_anatomy.ontology def: "The meeting line of two primary body plates, as a rule forming a furrow-like impression." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004480 name: phragma (Drosophila) namespace: fly_anatomy.ontology def: "Infolding of the integument forming an internal membrane or plate." [FlyBase:FBrf0007734, FlyBase:FBrf0009202] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004481 name: adult external head (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007289 ! tagmatic subdivision of integument (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004483 name: ptilinum (Drosophila) namespace: fly_anatomy.ontology def: "Membranous sac that is part of the front of the head capsule. It is everted at eclosion and serves to break open the operculum at the end of the puparium. Following eclosion, it is withdrawn into the head where it collapses and becomes sclerotized, externally leaving the ptilinal suture." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004484 name: ptilinal suture (Drosophila) namespace: fly_anatomy.ontology def: "Suture across the front of the head, in between the eyes and just dorsal to the base of the antennae. It is a remnant of the internalization of the ptilinum after eclosion." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00004479 ! suture (Drosophila) relationship: part_of FBbt:00004483 ! ptilinum (Drosophila) [Term] id: FBbt:00004485 name: fronto-orbital plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004486 name: fronto-orbital suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004479 ! suture (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004487 name: antennal foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) [Term] id: FBbt:00004488 name: frons (Drosophila) namespace: fly_anatomy.ontology def: "An anterior part of the head capsule between the vertex and the clypeus, bounded laterally by the frontal suture and bearing a median ocellus." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004489 name: prefrons (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - facial carina. subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004488 ! frons (Drosophila) [Term] id: FBbt:00004490 name: postfrons (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004488 ! frons (Drosophila) [Term] id: FBbt:00004491 name: gena (Drosophila) namespace: fly_anatomy.ontology def: "The bilateral part of the head capsule below the eyes, delimited by the occipital suture behind and the mouthparts below." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "cheek" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004493 name: paraocciput (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003155 ! arthropod occiput [Term] id: FBbt:00004494 name: postocciput (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003155 ! arthropod occiput [Term] id: FBbt:00004495 name: ocellar triangle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004496 name: postgena (Drosophila) namespace: fly_anatomy.ontology def: "A posterior region of the head capsule behind the gena." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004497 name: premandibular suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "premandibular sulcus" RELATED [] is_a: FBbt:00004479 ! suture (Drosophila) relationship: part_of FBbt:00004481 ! adult external head (Drosophila) [Term] id: FBbt:00004498 name: rostral membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004499 name: occipital foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) [Term] id: FBbt:00004500 name: adult tentorium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of UBERON:0003153 ! head capsule [Term] id: FBbt:00004501 name: tentorial pit (Drosophila) namespace: fly_anatomy.ontology def: "Paired depression of the head capsule corresponding to an articulation of a tentorial bar (arm)." [ISBN:978-3-11-014898-5] subset: cur ! cur is_a: FBbt:00005811 ! articulation (Drosophila) relationship: part_of FBbt:00004500 ! adult tentorium (Drosophila) [Term] id: FBbt:00004502 name: anterior tentorial pit (Drosophila) namespace: fly_anatomy.ontology def: "Lateral paired tentorial pit ventral to the eye, at the boundary between the head capsule and the mouthparts." [FlyBase:FBrf0007734, ISBN:978-3-11-014898-5] subset: cur ! cur is_a: FBbt:00004501 ! tentorial pit (Drosophila) [Term] id: FBbt:00004503 name: posterior tentorial pit (Drosophila) namespace: fly_anatomy.ontology def: "Paired tentorial pit at the back of the head capsule, at the boundary between the post-gena and the tentorial bridge." [FlyBase:FBrf0007734, ISBN:978-3-11-014898-5] subset: cur ! cur is_a: FBbt:00004501 ! tentorial pit (Drosophila) [Term] id: FBbt:00004504 name: posterior tentorial bar (Drosophila) namespace: fly_anatomy.ontology def: "Bar across the ventral base of the occipital foramen." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004500 ! adult tentorium (Drosophila) [Term] id: FBbt:00004509 name: eye equator (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000018 ! compound eye [Term] id: FBbt:00004513 name: first segment of antenna (Drosophila) namespace: fly_anatomy.ontology def: "Proximal-most segment of the antenna." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "antennal segment 1" EXACT [] synonym: "scape" RELATED [] is_a: FBbt:00007149 ! segment of antenna (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00004514 name: second segment of antenna (Drosophila) namespace: fly_anatomy.ontology def: "Second segment of the antenna. It is swollen and has numerous sensilla." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "antennal segment 2" RELATED [] synonym: "pedicel" RELATED [] is_a: FBbt:00007149 ! segment of antenna (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00004515 name: third segment of antenna (Drosophila) namespace: fly_anatomy.ontology def: "Bulbous 3rd segment of the antenna. It has an articulated joint with the 2nd segment of the antenna." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "antennal segment 3" RELATED [] synonym: "flugellum" RELATED [] synonym: "funiculus" RELATED [] is_a: FBbt:00007149 ! segment of antenna (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00004516 name: fourth segment of antenna (Drosophila) namespace: fly_anatomy.ontology def: "A small ring at the base of the 5th segment, where it attaches to the 3rd segment." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "antennal segment 4" RELATED [] synonym: "flugellum" BROAD [] is_a: FBbt:00007149 ! segment of antenna (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00004517 name: fifth segment of antenna (Drosophila) namespace: fly_anatomy.ontology def: "Segment of the antenna at the base of the arista." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "antennal segment 5" RELATED [] synonym: "flugellum" BROAD [] is_a: FBbt:00007149 ! segment of antenna (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00004518 name: basal cylinder (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "antennal segment 4+5 of Ferris" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004517 ! fifth segment of antenna (Drosophila) [Term] id: FBbt:00004519 name: arista (Drosophila) namespace: fly_anatomy.ontology def: "Highly specialised, slender sixth segment of the antenna covered in bristle-like outgrowths known as laterals." [FlyBase:FBrf0007734, FlyBase:FBrf0137012] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "segment 6" RELATED [] is_a: FBbt:00007149 ! segment of antenna (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00004520 name: mouthpart (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004481 ! adult external head (Drosophila) [Term] id: FBbt:00004521 name: clypeus (Drosophila) namespace: fly_anatomy.ontology def: "The anterior part of the head between the frons and the labrum, which occasionally may fuse with either one to form the frontoclypeus and the clypeolabrum. In the context of Drosophila refers to a round structure on the center of the frontal adult external head." [FBC:gg, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: develops_from FBbt:00001765 ! clypeo-labral disc (Drosophila) relationship: part_of FBbt:00004540 ! basiproboscis (Drosophila) [Term] id: FBbt:00004523 name: anterior labial plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of UBERON:0005905 ! insect labrum [Term] id: FBbt:00004524 name: discal sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of UBERON:0005905 ! insect labrum [Term] id: FBbt:00004525 name: prestomal cavity (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005905 ! insect labrum [Term] id: FBbt:00004526 name: adult cibarium (Drosophila) namespace: fly_anatomy.ontology def: "The proximal portion of the adult pharynx, which functions as a sucking pump. It consists of two arched sclerotized plates. The posterior plate is fixed in position by its connections with the clypeus. The anterior plate fits against the concave side of the posterior plate and bears a ridge shaped apodeme (apodemal carina) that is attached to large dilator muscles that attach to clypeus. Their contraction pulls the anterior plate forward, enlarging the cibarial lumen and thus producing suction." [FlyBase:FBrf0007733] comment: In some treatments, the term pharynx is used as synonym of cibarium, here it only refers to the portion proximal to the hypopharynx. subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "atrium" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from FBbt:00001765 ! clypeo-labral disc (Drosophila) relationship: part_of FBbt:00004520 ! mouthpart (Drosophila) [Term] id: FBbt:00004527 name: cibarial plate (Drosophila) namespace: fly_anatomy.ontology def: "One of the two sclerotized plates of the cibarium." [FBC:DOS] subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00004528 name: anterior plate of cibarium (Drosophila) namespace: fly_anatomy.ontology def: "Mobile, arched, sclerotized plate on the anterior side of the cibarium. It bears a ridge shaped apodeme (apodemal carina) that is attached to large dilator muscles that attach to clypeus." [FlyBase:FBrf0007733] subset: cur ! cur is_a: FBbt:00004527 ! cibarial plate (Drosophila) [Term] id: FBbt:00004529 name: posterior plate of cibarium (Drosophila) namespace: fly_anatomy.ontology def: "Fixed, arched, sclerotized plate on the posterior side of the cibarium. It is attached to the clypeus." [FlyBase:FBrf0007733] subset: cur ! cur is_a: FBbt:00004527 ! cibarial plate (Drosophila) [Term] id: FBbt:00004530 name: ventral margin of cibarium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "fulcrum" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00004531 name: labellum (Drosophila) namespace: fly_anatomy.ontology def: "The broadened, cushion-like, apical part of the rostral mouth parts. Its canaliculate surface functions in the intake of liquid food." [FlyBase:FBrf0007734, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "labial palpus" RELATED [FlyBase:FBrf0007734] is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: develops_from FBbt:00001764 ! labial disc (Drosophila) relationship: part_of FBbt:00004542 ! distiproboscis (Drosophila) [Term] id: FBbt:00004533 name: labellar cap (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00004534 name: prementum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "theca" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00004535 name: proboscis (Drosophila) namespace: fly_anatomy.ontology def: "The trunk-like extension of adult head, forming a protrusible sucking proboscis for the ingestion of liquid food (pg 425 Miller et al., 1950; pg 383, Ferris et al., 1950)." [FlyBase:FBrf0007734, FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00001764 ! labial disc (Drosophila) relationship: part_of FBbt:00004520 ! mouthpart (Drosophila) [Term] id: FBbt:00004536 name: lacinia (Drosophila) namespace: fly_anatomy.ontology def: "Paired inner lobate structures sitting on the apical margin near the base of the maxillary palps. A component of the proboscis." [FBC:gg, FlyBase:FBim0000788, FlyBase:FBim0000834, FlyBase:FBrf0007734, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004520 ! mouthpart (Drosophila) [Term] id: FBbt:00004537 name: anterior arm of lacinia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004536 ! lacinia (Drosophila) [Term] id: FBbt:00004538 name: ventral arm of lacinia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004536 ! lacinia (Drosophila) [Term] id: FBbt:00004539 name: dorsal arm of lacinia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004536 ! lacinia (Drosophila) [Term] id: FBbt:00004540 name: basiproboscis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004520 ! mouthpart (Drosophila) [Term] id: FBbt:00004541 name: mediproboscis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "haustellum" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004520 ! mouthpart (Drosophila) [Term] id: FBbt:00004542 name: distiproboscis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004520 ! mouthpart (Drosophila) [Term] id: FBbt:00004543 name: adult maxillary structure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00001764 ! labial disc (Drosophila) relationship: part_of FBbt:00003016 ! adult maxillary segment (Drosophila) relationship: part_of FBbt:00004540 ! basiproboscis (Drosophila) [Term] id: FBbt:00004544 name: mentum (Drosophila) namespace: fly_anatomy.ontology def: "The distal part of the labium originally paired, secondarily fused into one broad plate bearing on its apical margin usually a prementum, and the paired appendages of the labial palp, the glossa and the paraglossa. In the context of Drosophila refers to the adult maxillary structures." [FBC:gg, ISBN:978-3-11-014898-5] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004543 ! adult maxillary structure (Drosophila) [Term] id: FBbt:00004545 name: maxillary lobe (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004543 ! adult maxillary structure (Drosophila) [Term] id: FBbt:00004546 name: maxillary palpus (Drosophila) namespace: fly_anatomy.ontology def: "The paired sensory appendage of the adult maxillary segment." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "palpus" RELATED [] is_a: UBERON:0000026 ! appendage relationship: part_of FBbt:00004545 ! maxillary lobe (Drosophila) [Term] id: FBbt:00004547 name: salivary stylet (Drosophila) namespace: fly_anatomy.ontology def: "Papilla located just posterior to the oral opening that bears the opening of the adult salivary duct at its apex." [FlyBase:FBrf0007734] comment: Ferris, 1950 claims that the hypopharynx does not exist in D.melanogaster, although the salivary stylet is often mistaken for it. It seems likely that the salivary stylet (FBbt:00004547) and the hypopharynx described by Bodenstein, 1950 (FBbt:00003130) are the same structure. subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004481 ! adult external head (Drosophila) [Term] id: FBbt:00004548 name: cervical sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of FBbt:00004481 ! adult external head (Drosophila) [Term] id: FBbt:00004549 name: cervical suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004479 ! suture (Drosophila) relationship: part_of FBbt:00004481 ! adult external head (Drosophila) [Term] id: FBbt:00004550 name: neck (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004481 ! adult external head (Drosophila) [Term] id: FBbt:00004551 name: adult external thorax (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0006943] subset: cur ! cur is_a: FBbt:00007289 ! tagmatic subdivision of integument (Drosophila) relationship: part_of FBbt:00003018 ! adult thorax (Drosophila) relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004552 name: tergum (Drosophila) namespace: fly_anatomy.ontology def: "The upper, originally unpaired plate of the segmented insect body, which either independently or fused with a ventral plate covers the body dorsally, specifically that of the thorax." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004551 ! adult external thorax (Drosophila) [Term] id: FBbt:00004553 name: pleurum (Drosophila) namespace: fly_anatomy.ontology def: "A region of the side of the adult external thorax." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004551 ! adult external thorax (Drosophila) [Term] id: FBbt:00004554 name: episternum (Drosophila) namespace: fly_anatomy.ontology def: "The anterior part of the pleuron (lateral plate of the adult thorax), above the coxa." [ISBN:978-3-11-014898-5] subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004553 ! pleurum (Drosophila) [Term] id: FBbt:00004555 name: preepisternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004553 ! pleurum (Drosophila) [Term] id: FBbt:00004556 name: epimeron (Drosophila) namespace: fly_anatomy.ontology def: "Large lateral plate of the thorax, behind the pleural suture." [ISBN:978-3-11-014898-5] subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004553 ! pleurum (Drosophila) [Term] id: FBbt:00004558 name: adult external prothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00003020 ! adult prothoracic segment (Drosophila) relationship: part_of FBbt:00004551 ! adult external thorax (Drosophila) [Term] id: FBbt:00004559 name: dorsal prothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: develops_from FBbt:00001777 ! humeral disc (Drosophila) relationship: part_of FBbt:00004558 ! adult external prothorax (Drosophila) [Term] id: FBbt:00004560 name: prothoracic tergum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004552 ! tergum (Drosophila) relationship: part_of FBbt:00004559 ! dorsal prothorax (Drosophila) [Term] id: FBbt:00004561 name: pronotum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004560 ! prothoracic tergum (Drosophila) [Term] id: FBbt:00004562 name: humerus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "humeral callus" EXACT [] synonym: "postpronotum" EXACT [] synonym: "prescutal lobe" EXACT [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004559 ! dorsal prothorax (Drosophila) [Term] id: FBbt:00004563 name: humeral trabecule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004562 ! humerus (Drosophila) [Term] id: FBbt:00004564 name: ventral prothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: develops_from FBbt:00001781 ! prothoracic leg disc (Drosophila) relationship: part_of FBbt:00004558 ! adult external prothorax (Drosophila) [Term] id: FBbt:00004565 name: prothoracic pleurum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "prepleura" RELATED [] is_a: FBbt:00004553 ! pleurum (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004566 name: prothoracic episternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "propleurum" EXACT [FlyBase:FBrf0007735] is_a: FBbt:00004554 ! episternum (Drosophila) relationship: part_of FBbt:00004565 ! prothoracic pleurum (Drosophila) [Term] id: FBbt:00004567 name: prothoracic preepisternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004555 ! preepisternum (Drosophila) relationship: part_of FBbt:00004565 ! prothoracic pleurum (Drosophila) [Term] id: FBbt:00004568 name: prothoracic epimeron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004556 ! epimeron (Drosophila) relationship: part_of FBbt:00004565 ! prothoracic pleurum (Drosophila) [Term] id: FBbt:00004569 name: prothoracic sternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0003130 ! arthropod sternum relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004570 name: furcasternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004569 ! prothoracic sternum (Drosophila) [Term] id: FBbt:00004571 name: prothoracic postcoxal bridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004572 name: prothoracic leg foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004573 name: prescutal suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004479 ! suture (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004574 name: prothoracic furca (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "prothoracic sternal apophysis" RELATED [] is_a: FBbt:00005813 ! apophysis (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004575 name: prothoracic pleural apophysis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005813 ! apophysis (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004576 name: prothoracic phragma (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "antephragme" RELATED [] is_a: FBbt:00004480 ! phragma (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004577 name: prothoracic articulation (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005811 ! articulation (Drosophila) relationship: part_of FBbt:00004564 ! ventral prothorax (Drosophila) [Term] id: FBbt:00004578 name: adult external mesothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00003021 ! adult mesothoracic segment (Drosophila) relationship: part_of FBbt:00004551 ! adult external thorax (Drosophila) [Term] id: FBbt:00004579 name: dorsal mesothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: develops_from FBbt:00001778 ! wing disc (Drosophila) relationship: part_of FBbt:00004578 ! adult external mesothorax (Drosophila) [Term] id: FBbt:00004580 name: mesothoracic tergum (Drosophila) namespace: fly_anatomy.ontology def: "In the general sense, the whole upper part of a thoracic segment." [ISBN:978-3-11-014898-5] subset: cur ! cur synonym: "notum" RELATED [] is_a: FBbt:00004552 ! tergum (Drosophila) relationship: develops_from FBbt:00006032 ! mesothoracic tergum primordium (Drosophila) relationship: part_of FBbt:00004579 ! dorsal mesothorax (Drosophila) [Term] id: FBbt:00004581 name: trident (Drosophila) namespace: fly_anatomy.ontology def: "Region of mesothoracic tergum defined by a trident-shaped pattern of dark pigmentation." [FBC:DOS] subset: cur ! cur is_a: FBbt:00007291 ! region of integument defined by pigmentation pattern (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004582 name: prescutum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004583 name: scutum (Drosophila) namespace: fly_anatomy.ontology def: "The whole upper part of the usually winged meso- and metathorax resembling a shield." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "mesonotum" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004584 name: notal wing process (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004585 name: anterior notal wing process (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004584 ! notal wing process (Drosophila) [Term] id: FBbt:00004586 name: posterior notal wing process (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004584 ! notal wing process (Drosophila) [Term] id: FBbt:00004587 name: scutellum (Drosophila) namespace: fly_anatomy.ontology def: "A small shield-like region at the posterior of the mesothoracic tergum." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004588 name: postnotum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "postscutellum" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004589 name: mesothoracic laterotergite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "postpleure superieure" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004580 ! mesothoracic tergum (Drosophila) [Term] id: FBbt:00004590 name: ventral mesothorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: develops_from FBbt:00001782 ! mesothoracic leg disc (Drosophila) relationship: part_of FBbt:00004578 ! adult external mesothorax (Drosophila) [Term] id: FBbt:00004591 name: mesothoracic pleurum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "pleura" RELATED [] is_a: FBbt:00004553 ! pleurum (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004592 name: mesothoracic epimeron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004556 ! epimeron (Drosophila) relationship: part_of FBbt:00004591 ! mesothoracic pleurum (Drosophila) [Term] id: FBbt:00004593 name: anepimeron (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal part of the thoracic epimeron." [ISBN:978-3-11-014898-5] subset: cur ! cur synonym: "pteropleurite" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004556 ! epimeron (Drosophila) [Term] id: FBbt:00004594 name: katepimeron (Drosophila) namespace: fly_anatomy.ontology def: "Ventral part of the thoracic epimeron." [ISBN:978-3-11-014898-5] subset: cur ! cur synonym: "hypopleurite" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004556 ! epimeron (Drosophila) [Term] id: FBbt:00004595 name: pleural wing process (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004596 name: mesothoracic episternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004554 ! episternum (Drosophila) relationship: part_of FBbt:00004591 ! mesothoracic pleurum (Drosophila) [Term] id: FBbt:00004597 name: anepisternum (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal part of the episternum." [ISBN:978-3-11-014898-5] subset: cur ! cur synonym: "mesopleurite" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004554 ! episternum (Drosophila) [Term] id: FBbt:00004598 name: mesothoracic preepisternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "sternopleurite" RELATED [] is_a: FBbt:00004555 ! preepisternum (Drosophila) relationship: part_of FBbt:00004596 ! mesothoracic episternum (Drosophila) [Term] id: FBbt:00004599 name: katepisternum (Drosophila) namespace: fly_anatomy.ontology def: "The lower part of the thoracic episternum." [ISBN:978-3-11-014898-5] subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004554 ! episternum (Drosophila) [Term] id: FBbt:00004600 name: mesothoracic suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004479 ! suture (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004601 name: scutoscutellar suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004600 ! mesothoracic suture (Drosophila) [Term] id: FBbt:00004602 name: intrascutal suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004600 ! mesothoracic suture (Drosophila) [Term] id: FBbt:00004603 name: pleural suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004600 ! mesothoracic suture (Drosophila) [Term] id: FBbt:00004604 name: notopleural suture (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004600 ! mesothoracic suture (Drosophila) [Term] id: FBbt:00004605 name: mesothoracic cleft (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004479 ! suture (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004606 name: vertical cleft (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004605 ! mesothoracic cleft (Drosophila) [Term] id: FBbt:00004607 name: pleural cleft (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004605 ! mesothoracic cleft (Drosophila) [Term] id: FBbt:00004608 name: mesothoracic phragma (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004480 ! phragma (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004609 name: adult mesothoracic spiracle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adult spiracle 1" RELATED [] is_a: FBbt:00003120 ! adult spiracle (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004610 name: prealar apophysis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005813 ! apophysis (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004611 name: mesothoracic foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004612 name: wing foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004611 ! mesothoracic foramen (Drosophila) [Term] id: FBbt:00004613 name: mesothoracic leg foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004611 ! mesothoracic foramen (Drosophila) [Term] id: FBbt:00004614 name: mesothoracic articulation (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005811 ! articulation (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004615 name: mesothoracic ventral articulation (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004614 ! mesothoracic articulation (Drosophila) [Term] id: FBbt:00004616 name: mesothoracic coxal bridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004617 name: mesothoracic precoxal bridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004616 ! mesothoracic coxal bridge (Drosophila) [Term] id: FBbt:00004618 name: mesothoracic postcoxal bridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004616 ! mesothoracic coxal bridge (Drosophila) [Term] id: FBbt:00004619 name: mesofurca (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "mesothoracic sternal apophysis" RELATED [] is_a: FBbt:00005813 ! apophysis (Drosophila) relationship: part_of FBbt:00004590 ! ventral mesothorax (Drosophila) [Term] id: FBbt:00004620 name: adult external metathorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00003022 ! adult metathoracic segment (Drosophila) relationship: part_of FBbt:00004551 ! adult external thorax (Drosophila) [Term] id: FBbt:00004621 name: dorsal metathorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: develops_from FBbt:00001779 ! haltere disc (Drosophila) relationship: part_of FBbt:00004620 ! adult external metathorax (Drosophila) [Term] id: FBbt:00004622 name: metathoracic tergum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004552 ! tergum (Drosophila) relationship: part_of FBbt:00004621 ! dorsal metathorax (Drosophila) [Term] id: FBbt:00004623 name: metathoracic laterotergite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "metanotum" RELATED [] is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004622 ! metathoracic tergum (Drosophila) [Term] id: FBbt:00004624 name: ventral metathorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: develops_from FBbt:00001783 ! metathoracic leg disc (Drosophila) relationship: part_of FBbt:00004620 ! adult external metathorax (Drosophila) [Term] id: FBbt:00004625 name: metathoracic pleurum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "postpleura" RELATED [] is_a: FBbt:00004553 ! pleurum (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004626 name: metathoracic epimeron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004556 ! epimeron (Drosophila) relationship: part_of FBbt:00004625 ! metathoracic pleurum (Drosophila) [Term] id: FBbt:00004627 name: metathoracic episternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004554 ! episternum (Drosophila) relationship: part_of FBbt:00004625 ! metathoracic pleurum (Drosophila) [Term] id: FBbt:00004628 name: metathoracic preepisternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004555 ! preepisternum (Drosophila) relationship: part_of FBbt:00004627 ! metathoracic episternum (Drosophila) [Term] id: FBbt:00004629 name: metathoracic foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004630 name: haltere foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) relationship: part_of FBbt:00004629 ! metathoracic foramen (Drosophila) [Term] id: FBbt:00004631 name: adult metathoracic spiracle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adult spiracle 2" RELATED [] is_a: FBbt:00003120 ! adult spiracle (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004632 name: metathoracic articulation (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005811 ! articulation (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004633 name: metathoracic ventral articulation (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004632 ! metathoracic articulation (Drosophila) [Term] id: FBbt:00004634 name: metathoracic leg foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004635 name: metathoracic coxal bridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004636 name: metathoracic precoxal bridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004635 ! metathoracic coxal bridge (Drosophila) [Term] id: FBbt:00004637 name: metathoracic postcoxal bridge (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004635 ! metathoracic coxal bridge (Drosophila) [Term] id: FBbt:00004638 name: metafurca (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "metathoracic sternal apophysis" RELATED [] is_a: FBbt:00005813 ! apophysis (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004639 name: metathoracic phragma (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "postphragme" RELATED [] is_a: FBbt:00004480 ! phragma (Drosophila) relationship: part_of FBbt:00004624 ! ventral metathorax (Drosophila) [Term] id: FBbt:00004641 name: coxa (Drosophila) namespace: fly_anatomy.ontology def: "Proximal most segment of the adult leg. It connects proximally to the thorax and distally to the trochanter." [FlyBase:FBrf0007734] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007150 ! segment of leg (Drosophila) relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00004643 name: trochanter (Drosophila) namespace: fly_anatomy.ontology def: "Small, second most proximal segment of the adult leg. It is located between the coxa and femur." [FlyBase:FBim0000836, FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00007150 ! segment of leg (Drosophila) relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00004644 name: femur (Drosophila) namespace: fly_anatomy.ontology def: "Large, third most proximal segment of the adult leg. It is located between the trochanter and the tibia." [FlyBase:FBim0000836, FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00007150 ! segment of leg (Drosophila) relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00004646 name: tarsal segment (Drosophila) namespace: fly_anatomy.ontology def: "A segment of the tarsus of the adult leg. The first tarsal segment, the metatarsus, is proximally connected to the tibia." [FlyBase:FBim0000836.html, FlyBase:FBrf0007734] subset: cur ! cur synonym: "tarsomere" EXACT [ISBN:978-0-8014-8125-3] is_a: FBbt:00007150 ! segment of leg (Drosophila) relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00004648 name: metatarsus (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004647 def: "The first of the tarsal segments of the adult leg. It is located between the tibia and the second tarsal segment and is longer than the other tarsal segments." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0111704] subset: cur ! cur synonym: "1st tarsal segment" RELATED [] synonym: "basitarsus" EXACT [ISBN:978-0-8014-8125-3] synonym: "first segment of the tarsus" RELATED [] synonym: "first tarsal segment" EXACT [] synonym: "tarsal segment 1" EXACT [] is_a: FBbt:00004646 ! tarsal segment (Drosophila) [Term] id: FBbt:00004649 name: tarsal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second most proximal tarsal segment of the adult leg." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0111704] subset: cur ! cur synonym: "second segment of the tarsus" EXACT [] synonym: "second tarsal segment" EXACT [] is_a: FBbt:00004646 ! tarsal segment (Drosophila) [Term] id: FBbt:00004650 name: tarsal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third most proximal tarsal segment of the adult leg." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0111704] subset: cur ! cur synonym: "third segment of the tarsus" EXACT [] synonym: "third tarsal segment" EXACT [] is_a: FBbt:00004646 ! tarsal segment (Drosophila) [Term] id: FBbt:00004651 name: tarsal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth most proximal tarsal segment of the adult leg." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0111704] subset: cur ! cur synonym: "fourth segment of the tarsus" EXACT [] synonym: "fourth tarsal segment" EXACT [] is_a: FBbt:00004646 ! tarsal segment (Drosophila) [Term] id: FBbt:00004653 name: pretarsus (Drosophila) namespace: fly_anatomy.ontology def: "The most distal segment of the adult leg. This segment is highly derived segment bears the claws." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0111704] subset: cur ! cur is_a: FBbt:00007150 ! segment of leg (Drosophila) relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00004654 name: auxilia (Drosophila) namespace: fly_anatomy.ontology def: "A small, lateral sclerite of the pretarsus. Each pretarsus has a symmetrical pair of these structures - one proximal to each claw (unguis)." [FlyBase:FBrf0007734, ISBN:978-0-8014-8125-3] subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004655 name: pulvillus (Drosophila) namespace: fly_anatomy.ontology def: "A lateral lobe of the pretarsus that is covered in cuticular hairs. There are two of these per pretarsus, ventral to the auxiliae and proximal to the claws (unguis)." [FlyBase:FBrf0007734, ISBN:978-0-8014-8125-3] subset: cur ! cur is_a: FBbt:00007596 ! integumentary process (Drosophila) relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004656 name: pulvillar membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004657 name: ungulfus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004658 name: unguitractor plate (Drosophila) namespace: fly_anatomy.ontology def: "A small ventral, median sclerite of the pretarsus that is partially invaginated into the end of the 5th tarsal segment and is the attachment site of the attachment of a long tendon connected to the pretarsal depressor muscle." [FlyBase:FBrf0007734, ISBN:978-0-8014-8125-3] subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004659 name: empodium (Drosophila) namespace: fly_anatomy.ontology def: "A spine-like process that lies in a medial position on the base of the foot (pretarsus) between the two claws (unguis)." [FlyBase:FBrf0007734, ISBN:978-0-8014-8125-3] subset: cur ! cur is_a: FBbt:00007596 ! integumentary process (Drosophila) relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004660 name: unguis (Drosophila) namespace: fly_anatomy.ontology def: "The paired, hollow chitinous hooks at the end of the pretarsus. These are sclerotized extensions of the integument (i.e. they consist of underlying epidermis and overlying cuticle.)" [FlyBase:FBrf0007734, ISBN:978-0-8014-8125-3, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "claw" EXACT [] is_a: FBbt:00004475 ! sclerite (Drosophila) is_a: FBbt:00007596 ! integumentary process (Drosophila) relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004661 name: unguis scale (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00004660 ! unguis (Drosophila) [Term] id: FBbt:00004662 name: retineria (Drosophila) namespace: fly_anatomy.ontology def: "Tiny hollow hairs on the distal pretarsus (foot) through with viscous substances are secreted." [ISBN:978-3-11-014898-5] comment: May refer to the hairs on the pulvillus. But difficult to tell as retineria currently has no Drosophila specific reference. subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00004653 ! pretarsus (Drosophila) [Term] id: FBbt:00004663 name: prothoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005895 ! insect leg relationship: develops_from FBbt:00001781 ! prothoracic leg disc (Drosophila) relationship: part_of FBbt:00003020 ! adult prothoracic segment (Drosophila) [Term] id: FBbt:00004664 name: prothoracic coxa (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004641 ! coxa (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004665 name: prothoracic tibia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0003131 ! arthropod tibia relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004666 name: prothoracic trochanter (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004643 ! trochanter (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004667 name: prothoracic femur (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004644 ! femur (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004668 name: prothoracic tarsal segment (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment (FBbt:00004646) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004646 ! tarsal segment (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004670 name: prothoracic metatarsus (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004669 def: "Any metatarsus (FBbt:00004648) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "prothoracic basitarsus" EXACT [ISBN:978-0-8014-8125-3] synonym: "prothoracic tarsal segment 1" EXACT [] is_a: FBbt:00004648 ! metatarsus (Drosophila) is_a: FBbt:00004668 ! prothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004671 name: prothoracic tarsal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 2 (FBbt:00004649) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004649 ! tarsal segment 2 (Drosophila) is_a: FBbt:00004668 ! prothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004672 name: prothoracic tarsal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 3 (FBbt:00004650) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004650 ! tarsal segment 3 (Drosophila) is_a: FBbt:00004668 ! prothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004673 name: prothoracic tarsal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 4 (FBbt:00004651) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004651 ! tarsal segment 4 (Drosophila) is_a: FBbt:00004668 ! prothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004674 name: prothoracic tarsal segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 5 (FBbt:00007595) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004668 ! prothoracic tarsal segment (Drosophila) is_a: FBbt:00007595 ! tarsal segment 5 (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004675 name: prothoracic pretarsus (Drosophila) namespace: fly_anatomy.ontology def: "Any pretarsus (FBbt:00004653) that is part of some prothoracic leg (FBbt:00004663)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004653 ! pretarsus (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00004676 name: prothoracic auxilia (Drosophila) namespace: fly_anatomy.ontology def: "Any auxilia (FBbt:00004654) that is part of some prothoracic pretarsus (FBbt:00004675)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004654 ! auxilia (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004677 name: prothoracic pulvillus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004655 ! pulvillus (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004678 name: prothoracic pulvillar membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004656 ! pulvillar membrane (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004679 name: prothoracic ungulfus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004657 ! ungulfus (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004680 name: prothoracic unguitractor plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004658 ! unguitractor plate (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004681 name: prothoracic empodium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004659 ! empodium (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004682 name: prothoracic unguis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004660 ! unguis (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004683 name: prothoracic unguis scale (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004682 ! prothoracic unguis (Drosophila) [Term] id: FBbt:00004684 name: prothoracic retineria (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004662 ! retineria (Drosophila) relationship: part_of FBbt:00004675 ! prothoracic pretarsus (Drosophila) [Term] id: FBbt:00004685 name: mesothoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005895 ! insect leg relationship: develops_from FBbt:00001782 ! mesothoracic leg disc (Drosophila) relationship: part_of FBbt:00003021 ! adult mesothoracic segment (Drosophila) [Term] id: FBbt:00004686 name: mesothoracic coxa (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004641 ! coxa (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004687 name: mesothoracic tibia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0003131 ! arthropod tibia relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004688 name: mesothoracic trochanter (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004643 ! trochanter (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004689 name: mesothoracic femur (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004644 ! femur (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004690 name: mesothoracic tarsal segment (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment (FBbt:00004646) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004646 ! tarsal segment (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004692 name: mesothoracic metatarsus (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004691 def: "Any metatarsus (FBbt:00004648) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "mesothoracic basitarsus" EXACT [ISBN:978-0-8014-8125-3] synonym: "mesothoracic tarsal segment 1" EXACT [] is_a: FBbt:00004648 ! metatarsus (Drosophila) is_a: FBbt:00004690 ! mesothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004693 name: mesothoracic tarsal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 2 (FBbt:00004649) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004649 ! tarsal segment 2 (Drosophila) is_a: FBbt:00004690 ! mesothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004694 name: mesothoracic tarsal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 3 (FBbt:00004650) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004650 ! tarsal segment 3 (Drosophila) is_a: FBbt:00004690 ! mesothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004695 name: mesothoracic tarsal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 4 (FBbt:00004651) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004651 ! tarsal segment 4 (Drosophila) is_a: FBbt:00004690 ! mesothoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004696 name: mesothoracic tarsal segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 5 (FBbt:00007595) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004690 ! mesothoracic tarsal segment (Drosophila) is_a: FBbt:00007595 ! tarsal segment 5 (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004697 name: mesothoracic pretarsus (Drosophila) namespace: fly_anatomy.ontology def: "Any pretarsus (FBbt:00004653) that is part of some mesothoracic leg (FBbt:00004685)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004653 ! pretarsus (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00004698 name: mesothoracic auxilia (Drosophila) namespace: fly_anatomy.ontology def: "Any auxilia (FBbt:00004654) that is part of some mesothoracic pretarsus (FBbt:00004697)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004654 ! auxilia (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004699 name: mesothoracic pulvillus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004655 ! pulvillus (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004700 name: mesothoracic pulvillar membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004656 ! pulvillar membrane (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004701 name: mesothoracic ungulfus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004657 ! ungulfus (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004702 name: mesothoracic unguitractor plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004658 ! unguitractor plate (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004703 name: mesothoracic empodium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004659 ! empodium (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004704 name: mesothoracic unguis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004660 ! unguis (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004705 name: mesothoracic unguis scale (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004661 ! unguis scale (Drosophila) relationship: part_of FBbt:00004704 ! mesothoracic unguis (Drosophila) [Term] id: FBbt:00004706 name: mesothoracic retineria (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004662 ! retineria (Drosophila) relationship: part_of FBbt:00004697 ! mesothoracic pretarsus (Drosophila) [Term] id: FBbt:00004707 name: metathoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005895 ! insect leg relationship: develops_from FBbt:00001783 ! metathoracic leg disc (Drosophila) relationship: part_of FBbt:00003022 ! adult metathoracic segment (Drosophila) [Term] id: FBbt:00004708 name: metathoracic coxa (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004641 ! coxa (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004709 name: metathoracic tibia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0003131 ! arthropod tibia relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004710 name: metathoracic trochanter (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004643 ! trochanter (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004711 name: metathoracic femur (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004644 ! femur (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004712 name: metathoracic tarsal segment (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment (FBbt:00004646) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004646 ! tarsal segment (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004714 name: metathoracic metatarsus (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004713 def: "Any metatarsus (FBbt:00004648) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "metathoracic basitarsus" EXACT [ISBN:978-0-8014-8125-3] synonym: "metathoracic tarsal segment 1" EXACT [] is_a: FBbt:00004648 ! metatarsus (Drosophila) is_a: FBbt:00004712 ! metathoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004715 name: metathoracic tarsal segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 2 (FBbt:00004649) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004649 ! tarsal segment 2 (Drosophila) is_a: FBbt:00004712 ! metathoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004716 name: metathoracic tarsal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 3 (FBbt:00004650) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004650 ! tarsal segment 3 (Drosophila) is_a: FBbt:00004712 ! metathoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004717 name: metathoracic tarsal segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 4 (FBbt:00004651) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004651 ! tarsal segment 4 (Drosophila) is_a: FBbt:00004712 ! metathoracic tarsal segment (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004718 name: metathoracic tarsal segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Any tarsal segment 5 (FBbt:00007595) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004712 ! metathoracic tarsal segment (Drosophila) is_a: FBbt:00007595 ! tarsal segment 5 (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004719 name: metathoracic pretarsus (Drosophila) namespace: fly_anatomy.ontology def: "Any pretarsus (FBbt:00004653) that is part of some metathoracic leg (FBbt:00004707)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004653 ! pretarsus (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00004720 name: metathoracic auxilia (Drosophila) namespace: fly_anatomy.ontology def: "Any auxilia (FBbt:00004654) that is part of some metathoracic pretarsus (FBbt:00004719)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004654 ! auxilia (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004721 name: metathoracic pulvillus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004655 ! pulvillus (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004722 name: metathoracic pulvillar membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004656 ! pulvillar membrane (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004723 name: metathoracic ungulfus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004657 ! ungulfus (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004724 name: metathoracic unguitractor plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004658 ! unguitractor plate (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004725 name: metathoracic empodium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004659 ! empodium (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004726 name: metathoracic unguis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004660 ! unguis (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004727 name: metathoracic unguis scale (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004726 ! metathoracic unguis (Drosophila) [Term] id: FBbt:00004728 name: metathoracic retineria (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004662 ! retineria (Drosophila) relationship: part_of FBbt:00004719 ! metathoracic pretarsus (Drosophila) [Term] id: FBbt:00004730 name: tegula (Drosophila) namespace: fly_anatomy.ontology def: "The small squamiform sclerite covering the extreme base of the costal vein. In the context of Drosophila refers to a tile-like structure at the proximal base of the wing." [FBC:gg, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00004731 name: wing hinge (Drosophila) namespace: fly_anatomy.ontology def: "The small plates and sclerites at the proximal part of the wing lending support to the costal and radial veins." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "wing base" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from FBbt:00006033 ! wing hinge primordium (Drosophila) relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00004732 name: wing sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "plate" RELATED [] is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of FBbt:00004731 ! wing hinge (Drosophila) [Term] id: FBbt:00004733 name: pleural sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004734 name: humeral sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004735 name: median sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004736 name: unnamed sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004737 name: axillary sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004738 name: 1st axillary sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004737 ! axillary sclerite (Drosophila) [Term] id: FBbt:00004739 name: 2nd axillary sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004737 ! axillary sclerite (Drosophila) [Term] id: FBbt:00004740 name: 3rd axillary sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004737 ! axillary sclerite (Drosophila) [Term] id: FBbt:00004741 name: 4th axillary sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004737 ! axillary sclerite (Drosophila) [Term] id: FBbt:00004742 name: basal sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004743 name: yellow club (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004744 name: axillary cord (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004732 ! wing sclerite (Drosophila) [Term] id: FBbt:00004745 name: axillary pouch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004731 ! wing hinge (Drosophila) [Term] id: FBbt:00004746 name: alar lobe (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004731 ! wing hinge (Drosophila) [Term] id: FBbt:00004747 name: alula (Drosophila) namespace: fly_anatomy.ontology def: "A small lobe at the posterior base of the wing." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004731 ! wing hinge (Drosophila) [Term] id: FBbt:00004748 name: wing septum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00004749 name: wing septum 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004748 ! wing septum (Drosophila) [Term] id: FBbt:00004750 name: wing septum 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004748 ! wing septum (Drosophila) [Term] id: FBbt:00004752 name: anal 2-3 vein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004753 name: 1st anal vein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004754 name: axillary vein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "subcostal vein" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004755 name: costal vein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "costa" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004756 name: distal costal vein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "costa" RELATED [] is_a: FBbt:00004755 ! costal vein (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004757 name: medial costal vein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "costa" RELATED [] is_a: FBbt:00004755 ! costal vein (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004758 name: proximal costal vein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "costa" RELATED [] is_a: FBbt:00004755 ! costal vein (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004759 name: wing vein L1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "marginal vein" RELATED [] synonym: "radius 1" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004760 name: wing vein L2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "radius 2-5" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004761 name: wing vein L3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dorsal radius" RELATED [] synonym: "medial anterior" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004762 name: wing vein L4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cubitus vein" RELATED [] synonym: "medial posterior and cubitus anterior" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004763 name: wing vein L5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cubitus anterior" RELATED [] synonym: "postcubitus vein" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004764 name: wing vein L6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "anal crossvein" RELATED [] synonym: "cubitus anterior and 1 anal vein" RELATED [] is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004765 name: crossvein (Drosophila) namespace: fly_anatomy.ontology def: "The short connecting wing veins joining the longitudinal wing veins." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0003194 ! imaginal disc-derived wing vein relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004766 name: humeral crossvein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004765 ! crossvein (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004767 name: anterior crossvein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "radial-medial crossvein" RELATED [] is_a: FBbt:00004765 ! crossvein (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004768 name: posterior crossvein (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "medial crossvein" RELATED [] is_a: FBbt:00004765 ! crossvein (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004769 name: wing cell (Drosophila) namespace: fly_anatomy.ontology def: "The regions of wing cuticle interposed between the wing veins." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "intervein" RELATED [] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004770 name: costal cell (Drosophila) namespace: fly_anatomy.ontology def: "Anterior/proximal wing cell (intervein) region bounded by wing vein L1 posteriorly, the costal vein anteriorly and the humeral crossvein proximally." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004771 name: marginal cell (Drosophila) namespace: fly_anatomy.ontology def: "Wing cell (intervein) region between wing veins L1 (wing margin) and L2." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur synonym: "A cell" RELATED [] is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004772 name: submarginal cell (Drosophila) namespace: fly_anatomy.ontology def: "Wing cell (intervein) region between L2 and L3." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur synonym: "B cell" RELATED [] is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004773 name: posterior cell (Drosophila) namespace: fly_anatomy.ontology def: "Distal wing cell (intervein) region posterior to wing vein L3. There are three of these per wing." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004774 name: 1st posterior cell (Drosophila) namespace: fly_anatomy.ontology def: "Wing cell (intervein) region distal to the anterior cross-vein and bounded by longitudinal veins L3 and L4." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur synonym: "C cell" RELATED [] is_a: FBbt:00004773 ! posterior cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004775 name: 2nd posterior cell (Drosophila) namespace: fly_anatomy.ontology def: "Wing cell (intervein) region bounded by L4, L5 and the posterior cross-vein." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur synonym: "D cell" RELATED [] is_a: FBbt:00004773 ! posterior cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004776 name: 3rd posterior cell (Drosophila) namespace: fly_anatomy.ontology def: "Most posterior wing cell (intervein) region - from wing vein L5 to the posterior wing margin. Wing vein L6 marks the proximal boundary." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur synonym: "E cell" RELATED [] is_a: FBbt:00004773 ! posterior cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004777 name: anal cell (Drosophila) namespace: fly_anatomy.ontology def: "Small wing cell (intervein) region proximal to the anal crossvein." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004778 name: axillary cell (Drosophila) namespace: fly_anatomy.ontology def: "Wing cell (intervein) region proximal to wing vein L6 and whose proximal border is a segment of the posterior wing margin." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004779 name: discal cell (Drosophila) namespace: fly_anatomy.ontology def: "Distal part of the wing cell (intervein) region proximal to the posterior cross vein and bounded by L3 and L4." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004780 name: wing basal cell (Drosophila) namespace: fly_anatomy.ontology def: "Proximally located wing cell (intervein) region between longitudinal veins L3 and L5. There are two of these per wing." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur is_a: FBbt:00004769 ! wing cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004781 name: wing basal cell 1 (Drosophila) namespace: fly_anatomy.ontology def: "Wing cell (intervein) region proximal to the anterior cross-vein and bounded by longitudinal veins L3 and L4." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur synonym: "C' cell" RELATED [] is_a: FBbt:00004780 ! wing basal cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004782 name: wing basal cell 2 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal part of the wing cell (intervein) region that is proximal to the posterior cross vein and bounded by wing veins L3 and L4." [FlyBase:FBim0000807, FlyBase:FBrf0007734, FlyBase:FBrf0066905] comment: See FBrf0066905 == Lindsley and Zimm, 1992 for a good schematic identifying wing cells (intervein). subset: cur ! cur is_a: FBbt:00004780 ! wing basal cell (Drosophila) relationship: part_of FBbt:00006015 ! wing blade (Drosophila) [Term] id: FBbt:00004784 name: capitellum (Drosophila) namespace: fly_anatomy.ontology def: "Bulbous, distal-most segment of the haltere." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00007018 ! appendage segment (Drosophila) relationship: part_of UBERON:0000987 ! haltere [Term] id: FBbt:00004785 name: haltere pedicel (Drosophila) namespace: fly_anatomy.ontology def: "Middle segment of the haltere." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00007018 ! appendage segment (Drosophila) relationship: part_of UBERON:0000987 ! haltere [Term] id: FBbt:00004786 name: scabellum (Drosophila) namespace: fly_anatomy.ontology def: "Proximal-most segment of the haltere." [FlyBase:FBrf0007734] subset: cur ! cur is_a: FBbt:00007018 ! appendage segment (Drosophila) relationship: part_of UBERON:0000987 ! haltere [Term] id: FBbt:00004787 name: haltere sclerite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004475 ! sclerite (Drosophila) relationship: part_of UBERON:0000987 ! haltere [Term] id: FBbt:00004788 name: adult external abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007289 ! tagmatic subdivision of integument (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004790 name: abdominal tergite 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001794 ! anterior dorsal histoblast nest abdominal 1 (Drosophila) relationship: develops_from FBbt:00001810 ! posterior dorsal histoblast nest abdominal 1 (Drosophila) relationship: part_of FBbt:00007286 ! integument of adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00004791 name: abdominal tergite 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001796 ! anterior dorsal histoblast nest abdominal 2 (Drosophila) relationship: develops_from FBbt:00001811 ! posterior dorsal histoblast nest abdominal 2 (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00004792 name: abdominal tergite 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001798 ! anterior dorsal histoblast nest abdominal 3 (Drosophila) relationship: develops_from FBbt:00001812 ! posterior dorsal histoblast nest abdominal 3 (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00004793 name: abdominal tergite 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001800 ! anterior dorsal histoblast nest abdominal 4 (Drosophila) relationship: develops_from FBbt:00001813 ! posterior dorsal histoblast nest abdominal 4 (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00004794 name: abdominal tergite 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001802 ! anterior dorsal histoblast nest abdominal 5 (Drosophila) relationship: develops_from FBbt:00001814 ! posterior dorsal histoblast nest abdominal 5 (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00004795 name: abdominal tergite 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001804 ! anterior dorsal histoblast nest abdominal 6 (Drosophila) relationship: develops_from FBbt:00001815 ! posterior dorsal histoblast nest abdominal 6 (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00004796 name: abdominal tergite 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001806 ! anterior dorsal histoblast nest abdominal 7 (Drosophila) relationship: develops_from FBbt:00001816 ! posterior dorsal histoblast nest abdominal 7 (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00004797 name: abdominal tergite 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004476 ! tergite (Drosophila) relationship: develops_from FBbt:00001808 ! anterior dorsal histoblast nest abdominal 8 (Drosophila) relationship: develops_from FBbt:00001817 ! posterior dorsal histoblast nest abdominal 8 (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00004799 name: abdominal sternite 1 (Drosophila) namespace: fly_anatomy.ontology comment: Does this exist? subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: develops_from FBbt:00001819 ! ventral histoblast nest abdominal 1 (Drosophila) relationship: develops_from FBbt:00001827 ! spiracular histoblast nest abdominal 1 (Drosophila) relationship: part_of FBbt:00007286 ! integument of adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00004800 name: abdominal sternite 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: develops_from FBbt:00001820 ! ventral histoblast nest abdominal 2 (Drosophila) relationship: develops_from FBbt:00001828 ! spiracular histoblast nest abdominal 2 (Drosophila) relationship: part_of FBbt:00003026 ! adult abdominal segment 2 (Drosophila) [Term] id: FBbt:00004801 name: abdominal sternite 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: develops_from FBbt:00001821 ! ventral histoblast nest abdominal 3 (Drosophila) relationship: develops_from FBbt:00001829 ! spiracular histoblast nest abdominal 3 (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00004802 name: abdominal sternite 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: develops_from FBbt:00001822 ! ventral histoblast nest abdominal 4 (Drosophila) relationship: develops_from FBbt:00001830 ! spiracular histoblast nest abdominal 4 (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00004803 name: abdominal sternite 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: develops_from FBbt:00001823 ! ventral histoblast nest abdominal 5 (Drosophila) relationship: develops_from FBbt:00001831 ! spiracular histoblast nest abdominal 5 (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00004804 name: abdominal sternite 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: develops_from FBbt:00001824 ! ventral histoblast nest abdominal 6 (Drosophila) relationship: develops_from FBbt:00001832 ! spiracular histoblast nest abdominal 6 (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00004805 name: abdominal sternite 7 (Drosophila) namespace: fly_anatomy.ontology comment: Does this exist? subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: develops_from FBbt:00001825 ! ventral histoblast nest abdominal 7 (Drosophila) relationship: develops_from FBbt:00001833 ! spiracular histoblast nest abdominal 7 (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00004806 name: abdominal sternite 11 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: part_of FBbt:00003035 ! adult abdominal segment 11 (Drosophila) [Term] id: FBbt:00004807 name: Wheeler's organ (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0032262] subset: cur ! cur is_a: FBbt:00007231 ! external sensillum (Drosophila) is_a: UBERON:0000968 ! adult abdominal sensillum relationship: part_of FBbt:00004477 ! sternite (Drosophila) [Term] id: FBbt:00004808 name: Wheeler's organ 1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004807 ! Wheeler's organ (Drosophila) relationship: part_of FBbt:00004799 ! abdominal sternite 1 (Drosophila) [Term] id: FBbt:00004809 name: Wheeler's organ 2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004807 ! Wheeler's organ (Drosophila) relationship: part_of FBbt:00004800 ! abdominal sternite 2 (Drosophila) [Term] id: FBbt:00004810 name: Wheeler's organ 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004807 ! Wheeler's organ (Drosophila) relationship: part_of FBbt:00004801 ! abdominal sternite 3 (Drosophila) [Term] id: FBbt:00004811 name: Wheeler's organ 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004807 ! Wheeler's organ (Drosophila) relationship: part_of FBbt:00004802 ! abdominal sternite 4 (Drosophila) [Term] id: FBbt:00004812 name: Wheeler's organ 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004807 ! Wheeler's organ (Drosophila) relationship: part_of FBbt:00004803 ! abdominal sternite 5 (Drosophila) [Term] id: FBbt:00004813 name: Wheeler's organ 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004807 ! Wheeler's organ (Drosophila) relationship: part_of FBbt:00004804 ! abdominal sternite 6 (Drosophila) [Term] id: FBbt:00004814 name: adult abdominal spiracle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003120 ! adult spiracle (Drosophila) relationship: part_of FBbt:00003024 ! adult abdominal segment (Drosophila) relationship: part_of FBbt:00004788 ! adult external abdomen (Drosophila) [Term] id: FBbt:00004815 name: adult abdominal spiracle 3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004814 ! adult abdominal spiracle (Drosophila) relationship: part_of FBbt:00003027 ! adult abdominal segment 3 (Drosophila) [Term] id: FBbt:00004816 name: adult abdominal spiracle 4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004814 ! adult abdominal spiracle (Drosophila) relationship: part_of FBbt:00003028 ! adult abdominal segment 4 (Drosophila) [Term] id: FBbt:00004817 name: adult abdominal spiracle 5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004814 ! adult abdominal spiracle (Drosophila) relationship: part_of FBbt:00003029 ! adult abdominal segment 5 (Drosophila) [Term] id: FBbt:00004818 name: adult abdominal spiracle 6 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004814 ! adult abdominal spiracle (Drosophila) relationship: part_of FBbt:00003030 ! adult abdominal segment 6 (Drosophila) [Term] id: FBbt:00004819 name: adult abdominal spiracle 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004814 ! adult abdominal spiracle (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00004820 name: adult abdominal spiracle 8 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00004814 ! adult abdominal spiracle (Drosophila) comment: There are only 7 pairs of spiracles in the adult abdomen. This is true for both sexes. (See FBrf0007734, pg409.) subset: cur ! cur [Term] id: FBbt:00004821 name: adult abdominal spiracle 9 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00004814 ! adult abdominal spiracle (Drosophila) comment: There are only 7 pairs of spiracles in the adult abdomen. This is true for both sexes. (See FBrf0007734, pg409.) subset: cur ! cur [Term] id: FBbt:00004822 name: pleural membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007287 ! integumentary plate (Drosophila) relationship: part_of FBbt:00004788 ! adult external abdomen (Drosophila) [Term] id: FBbt:00004823 name: analia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from FBbt:00001784 ! genital disc (Drosophila) relationship: part_of FBbt:00004788 ! adult external abdomen (Drosophila) [Term] id: FBbt:00004824 name: female analia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004823 ! analia (Drosophila) relationship: develops_from FBbt:00001787 ! female genital disc (Drosophila) [Term] id: FBbt:00004825 name: male analia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004823 ! analia (Drosophila) relationship: develops_from FBbt:00001785 ! male genital disc (Drosophila) [Term] id: FBbt:00004827 name: female genitalia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000990 ! reproductive system relationship: develops_from FBbt:00001787 ! female genital disc (Drosophila) relationship: part_of FBbt:00004830 ! female terminalia (Drosophila) [Term] id: FBbt:00004828 name: male genitalia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000990 ! reproductive system relationship: develops_from FBbt:00001785 ! male genital disc (Drosophila) relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004829 name: terminalia (Drosophila) namespace: fly_anatomy.ontology def: "A special term applied to various insect groups (e.g. Diptera) describing the distal half of the abdomen, i.e. segments 6--11 including the genital organ." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00004788 ! adult external abdomen (Drosophila) [Term] id: FBbt:00004830 name: female terminalia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004829 ! terminalia (Drosophila) relationship: develops_from FBbt:00001787 ! female genital disc (Drosophila) relationship: part_of FBbt:00004824 ! female analia (Drosophila) relationship: part_of UBERON:0003100 ! female organism [Term] id: FBbt:00004831 name: oviprotector (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "sternite 7/8 intersegmental membrane" RELATED [] is_a: FBbt:00004477 ! sternite (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) relationship: part_of FBbt:00004830 ! female terminalia (Drosophila) [Term] id: FBbt:00004832 name: female gonopod (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "abdominal sternite 8" RELATED [] synonym: "ovipositor" RELATED [] synonym: "oviscape" RELATED [] synonym: "vaginal plate" RELATED [] is_a: FBbt:00004477 ! sternite (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) relationship: part_of FBbt:00004830 ! female terminalia (Drosophila) [Term] id: FBbt:00004833 name: epiproct (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "abdominal tergite 9" RELATED [] synonym: "dorsal anal plate" RELATED [] synonym: "supraanal plate" RELATED [] is_a: FBbt:00004476 ! tergite (Drosophila) relationship: part_of FBbt:00003033 ! adult abdominal segment 9 (Drosophila) relationship: part_of FBbt:00004830 ! female terminalia (Drosophila) [Term] id: FBbt:00004834 name: hypoproct (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "abdominal sternite 9" RELATED [] synonym: "subanal plate" RELATED [] synonym: "ventral anal plate" RELATED [] is_a: FBbt:00004477 ! sternite (Drosophila) relationship: part_of FBbt:00003033 ! adult abdominal segment 9 (Drosophila) relationship: part_of FBbt:00004830 ! female terminalia (Drosophila) [Term] id: FBbt:00004835 name: male terminalia (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004829 ! terminalia (Drosophila) relationship: develops_from FBbt:00001785 ! male genital disc (Drosophila) relationship: part_of FBbt:00004825 ! male analia (Drosophila) relationship: part_of UBERON:0003101 ! male organism [Term] id: FBbt:00004836 name: male abdominal sternite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004477 ! sternite (Drosophila) relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004837 name: male abdominal sternite 7 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004836 ! male abdominal sternite (Drosophila) relationship: part_of FBbt:00003031 ! adult abdominal segment 7 (Drosophila) [Term] id: FBbt:00004838 name: male abdominal sternite 8 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004836 ! male abdominal sternite (Drosophila) relationship: part_of FBbt:00003032 ! adult abdominal segment 8 (Drosophila) [Term] id: FBbt:00004839 name: genital arch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "abdominal tergite 9" RELATED [] synonym: "epandrium" RELATED [] is_a: FBbt:00004476 ! tergite (Drosophila) relationship: part_of FBbt:00003033 ! adult abdominal segment 9 (Drosophila) relationship: part_of FBbt:00004828 ! male genitalia (Drosophila) [Term] id: FBbt:00004840 name: pons (Drosophila) namespace: fly_anatomy.ontology def: "A bridge-like component of the male terminalia." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004841 name: posterior lobe (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004842 name: lateral plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004843 name: clasper (Drosophila) namespace: fly_anatomy.ontology comment: Maybe - abdominal tergite 10. subset: cur ! cur synonym: "surstylus" RELATED [] is_a: FBbt:00004476 ! tergite (Drosophila) relationship: part_of FBbt:00003034 ! adult abdominal segment 10 (Drosophila) relationship: part_of FBbt:00004842 ! lateral plate (Drosophila) [Term] id: FBbt:00004844 name: anal plate (Drosophila) namespace: fly_anatomy.ontology def: "Paired tergite that lies immediately lateral to the anus in males." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "abdominal tergite 11" RELATED [] synonym: "cercus" RELATED [] is_a: FBbt:00004476 ! tergite (Drosophila) relationship: part_of FBbt:00003035 ! adult abdominal segment 11 (Drosophila) relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004845 name: male gonopod (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004844 ! anal plate (Drosophila) [Term] id: FBbt:00004846 name: paraphysis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "aedeagal guide" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004847 name: hypandrium (Drosophila) namespace: fly_anatomy.ontology def: "The ninth abdominal sternum of the male extended beneath the genital chamber." [FBC:gg, ISBN:978-3-11-014898-5] subset: cur ! cur synonym: "abdominal sternite 9" RELATED [] is_a: FBbt:00004477 ! sternite (Drosophila) relationship: part_of FBbt:00003033 ! adult abdominal segment 9 (Drosophila) relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004848 name: decasternum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "abdominal sternite 10" RELATED [] is_a: FBbt:00004477 ! sternite (Drosophila) relationship: part_of FBbt:00003034 ! adult abdominal segment 10 (Drosophila) relationship: part_of FBbt:00004835 ! male terminalia (Drosophila) [Term] id: FBbt:00004849 name: hypandrial process (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004848 ! decasternum (Drosophila) [Term] id: FBbt:00004851 name: phallic foramen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004478 ! foramen (Drosophila) relationship: part_of UBERON:0008811 ! intromittent organ [Term] id: FBbt:00004852 name: penis (Drosophila) namespace: fly_anatomy.ontology def: "Distal part of the aedeagus consisting of a median, scleratised, pointed lobe through which the ejaculatory duct discharges." [FlyBase:FBrf0007734] subset: cur ! cur synonym: "phallus" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0008811 ! intromittent organ [Term] id: FBbt:00004853 name: penis mantle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004852 ! penis (Drosophila) [Term] id: FBbt:00004854 name: dorsal paramere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004852 ! penis (Drosophila) [Term] id: FBbt:00004855 name: ventral paramere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004852 ! penis (Drosophila) [Term] id: FBbt:00004860 name: germline cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "germ cell" RELATED [] is_a: FBbt:00007002 ! cell (Drosophila) disjoint_from: FBbt:00100318 ! somatic cell (Drosophila) [Term] id: FBbt:00004862 name: fusome (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0000991 ! gonad [Term] id: FBbt:00004863 name: polyfusome (Drosophila) namespace: fly_anatomy.ontology def: "A gelatinous mass assembled by the fusion of the adjacent fusomes formed at consecutive cystocyte divisions in Drosophila." [ISBN:978-0-19-514324-9] subset: cur ! cur is_a: FBbt:00004862 ! fusome (Drosophila) [Term] id: FBbt:00004866 name: germarium (Drosophila) namespace: fly_anatomy.ontology subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of FBbt:00004893 ! ovariole (Drosophila) [Term] id: FBbt:00004867 name: germarium region 1 (Drosophila) namespace: fly_anatomy.ontology subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00004866 ! germarium (Drosophila) [Term] id: FBbt:00004868 name: germarium cap cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00004867 ! germarium region 1 (Drosophila) [Term] id: FBbt:00004869 name: germarium region 2 (Drosophila) namespace: fly_anatomy.ontology subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00004866 ! germarium (Drosophila) [Term] id: FBbt:00004870 name: germarium region 2a (Drosophila) namespace: fly_anatomy.ontology subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: develops_from FBbt:00004867 ! germarium region 1 (Drosophila) relationship: part_of FBbt:00004869 ! germarium region 2 (Drosophila) [Term] id: FBbt:00004871 name: germarium region 2b (Drosophila) namespace: fly_anatomy.ontology subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: develops_from FBbt:00004870 ! germarium region 2a (Drosophila) relationship: part_of FBbt:00004869 ! germarium region 2 (Drosophila) [Term] id: FBbt:00004872 name: germarium region 3 (Drosophila) namespace: fly_anatomy.ontology subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: develops_from FBbt:00004871 ! germarium region 2b (Drosophila) relationship: part_of FBbt:00004866 ! germarium (Drosophila) [Term] id: FBbt:00004874 name: oogonial cell (Drosophila) namespace: fly_anatomy.ontology subset: RD ! terms for rd test ontology subset: cur ! cur is_a: FBbt:00057012 ! female germline cell (Drosophila) relationship: part_of FBbt:00004866 ! germarium (Drosophila) [Term] id: FBbt:00004875 name: germline cyst (Drosophila) namespace: fly_anatomy.ontology def: "A developing unit of gametogenesis consisting of germline cells encapsulated by a layer of somatic cells." [FBC:DOS] subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure [Term] id: FBbt:00004876 name: cystoblast (Drosophila) namespace: fly_anatomy.ontology def: "Female germline cell which is the daughter of a female germline stem cell." [FlyBase:FBrf0064777] subset: RD ! terms for rd test ontology subset: cur ! cur is_a: FBbt:00004874 ! oogonial cell (Drosophila) relationship: develops_from CL:0000088 ! female germ line stem cell (sensu Nematoda and Protostomia) [Term] id: FBbt:00004877 name: cystocyte (Drosophila) namespace: fly_anatomy.ontology def: "Female germline cell born during one of four rounds of cell division following the birth of a cystoblast from a female germline stem cell until the point where one of the resulting 16 cells (the presumptive oocyte) enters meiosis. Cystocytes are interconnected by ring canals. The oocyte develops from one of two cystocytes that contain 4 ring canals." [FlyBase:FBrf0021038, FlyBase:FBrf0064777] subset: RD ! terms for rd test ontology subset: cur ! cur is_a: FBbt:00004874 ! oogonial cell (Drosophila) relationship: develops_from FBbt:00004876 ! cystoblast (Drosophila) [Term] id: FBbt:00004879 name: nurse cell ring canal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005409 ! ring canal (Drosophila) relationship: part_of FBbt:00007137 ! female germline cyst (Drosophila) [Term] id: FBbt:00004880 name: nurse cell ring canal rim (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004879 ! nurse cell ring canal (Drosophila) [Term] id: FBbt:00004881 name: inner nurse cell ring canal rim (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004880 ! nurse cell ring canal rim (Drosophila) [Term] id: FBbt:00004882 name: outer nurse cell ring canal rim (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004880 ! nurse cell ring canal rim (Drosophila) [Term] id: FBbt:00004883 name: nurse cell spectrosome (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005411 ! spectrosome (Drosophila) relationship: part_of CL:0000026 ! invertebrate nurse cell [Term] id: FBbt:00004884 name: nurse cell fusome (Drosophila) namespace: fly_anatomy.ontology def: "A tube-shaped gelatinous mass that extends through each ring canal formed during the cycle of cystocyte divisions." [FlyBase:FBrf0073745, ISBN:978-0-19-514324-9] subset: cur ! cur is_a: FBbt:00007140 ! female fusome (Drosophila) relationship: part_of CL:0000026 ! invertebrate nurse cell [Term] id: FBbt:00004885 name: nuage namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0043186 subset: cur ! cur [Term] id: FBbt:00004887 name: endobody (Drosophila) namespace: fly_anatomy.ontology def: "Spherical structure associated with the karyosome of the oocyte." [FlyBase:FBrf0034074, FlyBase:FBrf0064777] subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004888 ! oocyte nucleus (Drosophila) [Term] id: FBbt:00004888 name: oocyte nucleus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part [Term] id: FBbt:00004889 name: karyosome (Drosophila) namespace: fly_anatomy.ontology def: "The condensed chromosomes of an oocyte." [FlyBase:FBrf0034074, FlyBase:FBrf0064777] subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004888 ! oocyte nucleus (Drosophila) [Term] id: FBbt:00004890 name: germinal vesicle namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0042585 . ds060616. subset: cur ! cur [Term] id: FBbt:00004891 name: pole plasm (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000023 ! oocyte relationship: part_of CL:0000025 ! egg relationship: part_of FBbt:00005290 ! pre-blastoderm embryo (Drosophila) [Term] id: FBbt:00004892 name: pole granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004891 ! pole plasm (Drosophila) [Term] id: FBbt:00004893 name: ovariole (Drosophila) namespace: fly_anatomy.ontology def: "An egg assembly line. Consists of a germarium at the anterior tip connected to a chain of egg chambers, each one more mature than the preceding, more anterior egg chamber in the chain. Each ovariole is encased in a peritoneal sheath. A typical ovary contains about 16 ovarioles." [FlyBase:FBrf0064777] comment: DISAMBIGUATION: The term ovariole is sometimes incorrectly used to refer to individual egg chambers. Please use the term 'egg chamber' for this. subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000992 ! female gonad [Term] id: FBbt:00004895 name: basal stalk (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004893 ! ovariole (Drosophila) [Term] id: FBbt:00004897 name: peritoneal sheath (Drosophila) namespace: fly_anatomy.ontology def: "A network of anastomosing muscle fibers that covers the ovary. The muscle is striated with an irregular interdigitation of thick and thin filaments and perforated Z-discs." [FlyBase:FBrf0018806, FlyBase:FBrf0193596] comment: The ovarian sheath, which surround each ovariole, is distinct from the peritoneal sheath, which surrounds each ovary. subset: cur ! cur is_a: FBbt:00003527 ! adult circular muscle (Drosophila) [Term] id: FBbt:00004898 name: epithelial sheath (Drosophila) namespace: fly_anatomy.ontology def: "Inner epithelial layer of the ovarian sheath." [FlyBase:FBrf0018806] subset: cur ! cur is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0004911 ! epithelium of female gonad [Term] id: FBbt:00004899 name: ovarian basement membrane (Drosophila) namespace: fly_anatomy.ontology def: "An acellular membrane some 50 micrometers thick that is attached to the surface of the terminal filament, the germarium, and all developing egg chambers. The ovarian sheath sits on top (outside) of this." [FlyBase:FBrf0018806, FlyBase:FBrf0019876, FlyBase:FBrf0064777] subset: cur ! cur synonym: "tunica propria" EXACT [] is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of FBbt:00004893 ! ovariole (Drosophila) [Term] id: FBbt:00004900 name: vitellarium (Drosophila) namespace: fly_anatomy.ontology def: "Ovariole excluding the germarium." [FBC:DOS] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004893 ! ovariole (Drosophila) [Term] id: FBbt:00004901 name: terminal filament (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004900 ! vitellarium (Drosophila) [Term] id: FBbt:00004902 name: terminal filament basal cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00004901 ! terminal filament (Drosophila) [Term] id: FBbt:00004907 name: polar follicle cell (Drosophila) namespace: fly_anatomy.ontology def: "Follicle cell at the anterior or posterior pole of the egg chamber. The anterior polar follicle cells become border follicle cells. The posterior polar follicle cells are precursors of the posterior aeropyle." [FlyBase:FBrf0021038] subset: RD ! terms for rd test ontology subset: cur ! cur is_a: CL:0000477 ! follicle cell [Term] id: FBbt:00004908 name: nurse follicle cell (Drosophila) namespace: fly_anatomy.ontology def: "Any follicle cell (FBbt:00004904) that is part of some nurse cell associated follicular epithelium (FBbt:00007031)." [FBC:auto_generated_definition] subset: RD ! terms for rd test ontology subset: cur ! cur synonym: "NCFC" EXACT [FlyBase:FBrf0135734] synonym: "nurse cell follicle cell" EXACT [FlyBase:FBrf0135734] synonym: "squamous follicle cell" EXACT [] synonym: "stretch follicle cell" EXACT [] is_a: CL:0000477 ! follicle cell relationship: part_of FBbt:00007031 ! nurse cell associated follicular epithelium (Drosophila) [Term] id: FBbt:00004912 name: lateral oviduct (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial tube that connects an ovary to the common oviduct. It is lined with a chitinous intima." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0003914 ! epithelial tube relationship: part_of UBERON:0006835 ! arthropod oviduct [Term] id: FBbt:00004913 name: common oviduct (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial tube that connects the lateral oviducts to the uterus. It is lined with a chitinous intima." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "main oviduct" RELATED [] is_a: UBERON:0003914 ! epithelial tube relationship: part_of UBERON:0006835 ! arthropod oviduct [Term] id: FBbt:00004914 name: female accessory gland (Drosophila) namespace: fly_anatomy.ontology def: "Small, bilaterally paired gland that lies behind the spermathecae and is connected to the uterus by a duct. The gland wall consists of a single layer of polygonal cells, each with a large vacuole and a minute acidophillic granule towards the gland lumen." [FlyBase:FBrf0141451, FlyBase:FBrf0186027] subset: cur ! cur synonym: "ACgl" RELATED [FlyBase:FBrf0186027] synonym: "colleterial gland" RELATED [FlyBase:FBrf0186027] synonym: "parovarium" EXACT [FlyBase:FBrf0186027] is_a: FBbt:00100317 ! gland (Drosophila) relationship: develops_from FBbt:00001786 ! female repressed primordium (Drosophila) relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: FBbt:00004915 name: female accessory gland duct (Drosophila) namespace: fly_anatomy.ontology def: "A duct connecting a female accessory gland to the uterus, opening just behind the spermathecal ducts. It consists of a tube of thin epithelium lined with a thin chitinous intima, irregularly ringed with sharp ridges that project into the lumen." [FlyBase:FBrf0186027] subset: cur ! cur is_a: UBERON:0003914 ! epithelial tube relationship: part_of FBbt:00004914 ! female accessory gland (Drosophila) [Term] id: FBbt:00004916 name: female accessory gland main cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00004914 ! female accessory gland (Drosophila) [Term] id: FBbt:00004917 name: female accessory gland secondary cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00004914 ! female accessory gland (Drosophila) [Term] id: FBbt:00004918 name: calyx of oviduct (Drosophila) namespace: fly_anatomy.ontology def: "The anterior-most, cup-shaped region of the lateral oviduct." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0003914 ! epithelial tube relationship: develops_from FBbt:00001784 ! genital disc (Drosophila) relationship: part_of FBbt:00004912 ! lateral oviduct (Drosophila) [Term] id: FBbt:00004920 name: pedicel of ovarian sheath (Drosophila) namespace: fly_anatomy.ontology def: "The posterior end of the ovarian sheath, between the most posterior egg or egg chamber and the lateral oviduct." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from FBbt:00001787 ! female genital disc (Drosophila) relationship: part_of UBERON:0004911 ! epithelium of female gonad [Term] id: FBbt:00004922 name: seminal receptacle (Drosophila) namespace: fly_anatomy.ontology def: "A compactly coiled tube epithelial tube connected to the anterior end of the uterus. The tube is long (1.7-2.7 mm) and slender, consisting of a proximal duct around 22 micrometres wide with a narrow lumen (2.5 - 4.5 micrometres) and a wider distal half (around 28 micrometres) with a much larger lumen (12-19 micrometres). It is lined with a thin chitinous intima and surrounded by a nucleated sheath. The coil as a whole is surrounded by a sparsely nucleated peritoneal envelope. After copulation, the lumen of this tube is filled with spermatozoa, arranged longitudinally with their heads towards the closed tip of the tube." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "tubular receptacle" RELATED [] is_a: UBERON:0003914 ! epithelial tube relationship: develops_from FBbt:00001787 ! female genital disc (Drosophila) relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: FBbt:00004923 name: spermathecal duct (Drosophila) namespace: fly_anatomy.ontology def: "Duct connecting the capsule of the spermathecum to the uterus. It opens into the uterus on its dorsal wall, just posterior to the mouth of the oviduct and close to the openings of the accessory gland ducts." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0003914 ! epithelial tube relationship: part_of UBERON:0000994 ! spermathecum [Term] id: FBbt:00004925 name: vagina (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004919 def: "An elongate muscular pouch, the anterior part of which is the uterus, where eggs are fertilized, and the posterior part of which, the vulva is the copulatory orifice and site of exit for eggs." [FlyBase:FBrf0007735] subset: cur ! cur synonym: "genital chamber" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00001787 ! female genital disc (Drosophila) relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: FBbt:00004926 name: vulva (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00001787 ! female genital disc (Drosophila) relationship: part_of FBbt:00004925 ! vagina (Drosophila) [Term] id: FBbt:00004930 name: hub cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell which is part of the hub of the germinal proliferation center. It is attached to male germline stem cells and somatic stem cells via adherens junctions." [FlyBase:FBrf0064778, FlyBase:FBrf0190226] subset: FlyTed ! Testis slim subset: cur ! cur synonym: "apical cell" RELATED [] synonym: "interstitial cell" RELATED [] is_a: FBbt:00006031 ! somatic cell of testis (Drosophila) relationship: part_of FBbt:00007141 ! germinal proliferation center hub (Drosophila) [Term] id: FBbt:00004931 name: cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "One of a pair of somatic cells that envelope each cyst of developing male germline cells." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00006031 ! somatic cell of testis (Drosophila) relationship: develops_from FBbt:00004933 ! cyst progenitor cell (Drosophila) relationship: part_of FBbt:00007136 ! male germline cyst (Drosophila) [Term] id: FBbt:00004933 name: cyst progenitor cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004932 def: "A somatic stem cell; Mother of cyst cells; Associated with the hub of the germinal center and with male germline stem cells." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur synonym: "cyst stem cell" RELATED [] is_a: FBbt:00006010 ! gonadal somatic stem cell (Drosophila) is_a: FBbt:00006031 ! somatic cell of testis (Drosophila) relationship: part_of FBbt:00005259 ! germinal proliferation center (Drosophila) [Term] id: FBbt:00004937 name: spermatocyte fusome (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00007139 ! male fusome (Drosophila) relationship: part_of CL:0000017 ! spermatocyte [Term] id: FBbt:00004938 name: primary spermatocyte cyst (Drosophila) namespace: fly_anatomy.ontology def: "Male germline cyst containing primary spermatocytes." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00005258 ! spermatocyte cyst (Drosophila) [Term] id: FBbt:00004939 name: spermatocyte ring canal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005409 ! ring canal (Drosophila) relationship: part_of FBbt:00004938 ! primary spermatocyte cyst (Drosophila) [Term] id: FBbt:00004940 name: Y chromosome loop (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000017 ! spermatocyte [Term] id: FBbt:00004943 name: Nebenkern (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004945 ! onion stage spermatid (Drosophila) [Term] id: FBbt:00004944 name: protein body (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000018 ! spermatid [Term] id: FBbt:00004945 name: onion stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A round spermatid containing a spherical Nebenkern with an onion-like arrangement of mitochondrial material." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: CL:0000018 ! spermatid relationship: develops_from FBbt:00057171 ! clew stage spermatid (Drosophila) [Term] id: FBbt:00004946 name: waste bag (Drosophila) namespace: fly_anatomy.ontology def: "After individualisation of spermatids, the excess cytoplasm and organelles are dumped in a waste bag at the tail end of the spermatid cyst. This bags pinches off and eventually degrades." [FlyBase:FBrf0158862] subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000473 ! testis [Term] id: FBbt:00004947 name: acroblast (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000018 ! spermatid [Term] id: FBbt:00004948 name: acrosomal granule (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000018 ! spermatid [Term] id: FBbt:00004949 name: axial complex (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00005310 ! elongation stage spermatid (Drosophila) relationship: part_of FBbt:00005320 ! individualization stage spermatid (Drosophila) [Term] id: FBbt:00004950 name: spermatid axoneme (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "axial filament" RELATED [] is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004949 ! axial complex (Drosophila) [Term] id: FBbt:00004951 name: Nebenkern derivative (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: develops_from FBbt:00004943 ! Nebenkern (Drosophila) relationship: part_of FBbt:00004949 ! axial complex (Drosophila) [Term] id: FBbt:00004952 name: major mitochondrial derivative (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004951 ! Nebenkern derivative (Drosophila) [Term] id: FBbt:00004953 name: minor mitochondrial derivative (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00004951 ! Nebenkern derivative (Drosophila) [Term] id: FBbt:00004956 name: testis pigment cell (Drosophila) namespace: fly_anatomy.ontology def: "Flat, polygonal, pigmented epithelial cell which is part of the outer layer of the testis sheath." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: CL:0000066 ! epithelial cell relationship: part_of UBERON:0004910 ! epithelium of male gonad [Term] id: FBbt:00004957 name: testicular duct (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: FBbt:00004959 name: male accessory gland (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur synonym: "paragonium" RELATED [] is_a: FBbt:00100317 ! gland (Drosophila) relationship: develops_from FBbt:00001785 ! male genital disc (Drosophila) relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: FBbt:00004960 name: male accessory gland main cell (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00004959 ! male accessory gland (Drosophila) [Term] id: FBbt:00004961 name: male accessory gland secondary cell (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00004959 ! male accessory gland (Drosophila) [Term] id: FBbt:00004962 name: ejaculatory bulb (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur synonym: "sperm pump" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: FBbt:00004963 name: ejaculatory bulb apodeme (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur synonym: "skeletal rod" RELATED [] is_a: FBbt:00005091 ! apodeme (Drosophila) relationship: part_of FBbt:00004962 ! ejaculatory bulb (Drosophila) [Term] id: FBbt:00004964 name: ejaculatory bulb plate (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur synonym: "baseplate" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004962 ! ejaculatory bulb (Drosophila) [Term] id: FBbt:00004965 name: ejaculatory duct (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: develops_from FBbt:00001785 ! male genital disc (Drosophila) relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: FBbt:00004966 name: posterior ejaculatory duct (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of FBbt:00004965 ! ejaculatory duct (Drosophila) [Term] id: FBbt:00004967 name: anterior ejaculatory duct (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00100314 ! duct (Drosophila) relationship: part_of FBbt:00004965 ! ejaculatory duct (Drosophila) [Term] id: FBbt:00004968 name: vas deferens (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00001785 ! male genital disc (Drosophila) relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: FBbt:00004971 name: cuticulin layer (Drosophila) namespace: fly_anatomy.ontology def: "Outer layer of the cuticle consisting of proteins and waxes which functions as an impermeability barrier." [FlyBase:FBrf0064790] subset: cur ! cur is_a: FBbt:00007246 ! cuticle layer (Drosophila) [Term] id: FBbt:00004972 name: epicuticle (Drosophila) namespace: fly_anatomy.ontology def: "Amorphous layer between cuticulin layer and procuticle which consists largely of protein and is generally free of chitin." [FlyBase:FBrf0064790] subset: cur ! cur is_a: FBbt:00007246 ! cuticle layer (Drosophila) [Term] id: FBbt:00004975 name: procuticle (Drosophila) namespace: fly_anatomy.ontology def: "Lamellate innermost layer of cuticle which consists largely of protein and chitin. Within each lamella layer, chitin-protein fibers are arranged parallel to each other and to the surface of the underlying epidermis. The lemallae themselves are arranged in a helicoid fashion." [FlyBase:FBrf0064790] subset: cur ! cur is_a: FBbt:00007246 ! cuticle layer (Drosophila) [Term] id: FBbt:00004976 name: assembly zone (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007246 ! cuticle layer (Drosophila) [Term] id: FBbt:00004977 name: cuticular pore (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001001 ! chitin-based cuticle [Term] id: FBbt:00004978 name: exuvial fluid (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "moulting fluid" RELATED [] is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001001 ! chitin-based cuticle [Term] id: FBbt:00004979 name: trichome (Drosophila) namespace: fly_anatomy.ontology def: "Non-innervated projection of the cuticle around an actin-rich cellular process of an underlying epidermal cell." [FBC:DOS] subset: cur ! cur synonym: "cell hair" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) [Term] id: FBbt:00004980 name: dorsal hair (Drosophila) namespace: fly_anatomy.ontology def: "Hair on the dorsal surface of the larva on all segments except the prothorax, which is devoid of them. Members of this group are distributed in a well defined pattern." [FlyBase:FBrf0089570] comment: Disambiguation: a dorsal hair differs from a dorsal sensory hair (see figure 3.14 of Campos-Ortega and Hartenstein, 1997) in that it is a trichome, and therefore is not innervated. subset: cur ! cur is_a: FBbt:00004979 ! trichome (Drosophila) relationship: part_of FBbt:00004983 ! embryonic/larval cuticle (Drosophila) [Term] id: FBbt:00004981 name: dorsal thick hair (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tertiary dorsal hair" RELATED [] is_a: FBbt:00004980 ! dorsal hair (Drosophila) [Term] id: FBbt:00004982 name: dorsal fine hair (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "quaternary dorsal hair" RELATED [] is_a: FBbt:00004980 ! dorsal hair (Drosophila) [Term] id: FBbt:00004983 name: embryonic/larval cuticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval cuticle" EXACT [] is_a: UBERON:0001001 ! chitin-based cuticle relationship: part_of FBbt:00005393 ! embryonic/larval integumentary system (Drosophila) [Term] id: FBbt:00004984 name: embryonic/first instar larval cuticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004983 ! embryonic/larval cuticle (Drosophila) [Term] id: FBbt:00004985 name: second instar larval cuticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004983 ! embryonic/larval cuticle (Drosophila) [Term] id: FBbt:00004986 name: third instar larval cuticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004983 ! embryonic/larval cuticle (Drosophila) [Term] id: FBbt:00004987 name: puparium (Drosophila) namespace: fly_anatomy.ontology subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0001001 ! chitin-based cuticle relationship: develops_from FBbt:00004986 ! third instar larval cuticle (Drosophila) [Term] id: FBbt:00004988 name: puparial operculum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00004987 ! puparium (Drosophila) [Term] id: FBbt:00004989 name: puparial opercular seam (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00004988 ! puparial operculum (Drosophila) [Term] id: FBbt:00004990 name: prepupal cuticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001001 ! chitin-based cuticle relationship: part_of FBbt:00005394 ! prepupal integumentary system (Drosophila) [Term] id: FBbt:00004991 name: pupal cuticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001001 ! chitin-based cuticle relationship: part_of FBbt:00005394 ! prepupal integumentary system (Drosophila) [Term] id: FBbt:00004992 name: adult cuticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001001 ! chitin-based cuticle relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00004996 name: X and XF cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0057603] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0007376 ! outer epithelial layer [Term] id: FBbt:00004997 name: X cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004996 ! X and XF cell (Drosophila) [Term] id: FBbt:00004998 name: thoracic X cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004997 ! X cell (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00004999 name: prothoracic X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic X cell (FBbt:00004998) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004998 ! thoracic X cell (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00005000 name: mesothoracic X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic X cell (FBbt:00004998) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004998 ! thoracic X cell (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00005001 name: metathoracic X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic X cell (FBbt:00004998) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004998 ! thoracic X cell (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00005002 name: abdominal X cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004997 ! X cell (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00005003 name: abdominal 1 X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal X cell (FBbt:00005002) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005002 ! abdominal X cell (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00005004 name: abdominal 2 X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal X cell (FBbt:00005002) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005002 ! abdominal X cell (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00005005 name: abdominal 3 X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal X cell (FBbt:00005002) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005002 ! abdominal X cell (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00005006 name: abdominal 4 X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal X cell (FBbt:00005002) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005002 ! abdominal X cell (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00005007 name: abdominal 5 X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal X cell (FBbt:00005002) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005002 ! abdominal X cell (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00005008 name: abdominal 6 X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal X cell (FBbt:00005002) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005002 ! abdominal X cell (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00005009 name: abdominal 7 X cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal X cell (FBbt:00005002) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005002 ! abdominal X cell (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00005010 name: XF cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004996 ! X and XF cell (Drosophila) [Term] id: FBbt:00005011 name: thoracic XF cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005010 ! XF cell (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00005012 name: prothoracic XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic XF cell (FBbt:00005011) that is part of some larval prothoracic segment (FBbt:00001743)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005011 ! thoracic XF cell (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00005013 name: mesothoracic XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic XF cell (FBbt:00005011) that is part of some larval mesothoracic segment (FBbt:00001744)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005011 ! thoracic XF cell (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00005014 name: metathoracic XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any thoracic XF cell (FBbt:00005011) that is part of some larval metathoracic segment (FBbt:00001745)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005011 ! thoracic XF cell (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00005015 name: abdominal XF cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005010 ! XF cell (Drosophila) relationship: part_of FBbt:00001747 ! larval abdominal segment (Drosophila) [Term] id: FBbt:00005016 name: abdominal 1 XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal XF cell (FBbt:00005015) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005015 ! abdominal XF cell (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00005017 name: abdominal 2 XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal XF cell (FBbt:00005015) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005015 ! abdominal XF cell (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00005018 name: abdominal 3 XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal XF cell (FBbt:00005015) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005015 ! abdominal XF cell (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00005019 name: abdominal 4 XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal XF cell (FBbt:00005015) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005015 ! abdominal XF cell (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00005020 name: abdominal 5 XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal XF cell (FBbt:00005015) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005015 ! abdominal XF cell (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00005021 name: abdominal 6 XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal XF cell (FBbt:00005015) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005015 ! abdominal XF cell (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00005022 name: abdominal 7 XF cell (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal XF cell (FBbt:00005015) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005015 ! abdominal XF cell (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00005023 name: imaginal precursor (Drosophila) namespace: fly_anatomy.ontology def: "Structure that proliferates to produce an imaginal disc (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] subset: cur ! cur is_a: UBERON:0005423 ! developing anatomical structure [Term] id: FBbt:00005025 name: tracheal metamere (Drosophila) namespace: fly_anatomy.ontology def: "Segmental subdivision of the tracheal system." [FBC:DOS] subset: cur ! cur is_a: FBbt:00007331 ! segmental subdivision of organ system (Drosophila) relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: FBbt:00005026 name: tracheal metamere 1 (Drosophila) namespace: fly_anatomy.ontology def: "Metameric subdivision of the tracheal system that originates in the mesothoracic segment (T2). As well as tracheating the mesothoracic segment, major trachea of this metamere extend into all segments anterior to T2." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr1" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000187 ! mesothoracic tracheal primordium (Drosophila) relationship: part_of FBbt:00000018 ! mesothoracic segment (Drosophila) [Term] id: FBbt:00005027 name: tracheal metamere 2 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of T3." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr2" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000188 ! metathoracic tracheal primordium (Drosophila) relationship: part_of FBbt:00000019 ! metathoracic segment (Drosophila) [Term] id: FBbt:00005028 name: tracheal metamere 3 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A1." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr3" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000190 ! abdominal tracheal primordium 1 (Drosophila) relationship: part_of FBbt:00000022 ! abdominal segment 1 (Drosophila) [Term] id: FBbt:00005029 name: tracheal metamere 4 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A2." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr4" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000191 ! abdominal tracheal primordium 2 (Drosophila) relationship: part_of FBbt:00000023 ! abdominal segment 2 (Drosophila) [Term] id: FBbt:00005030 name: tracheal metamere 5 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A3." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr5" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000192 ! abdominal tracheal primordium 3 (Drosophila) relationship: part_of FBbt:00000024 ! abdominal segment 3 (Drosophila) [Term] id: FBbt:00005031 name: tracheal metamere 6 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A4." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr6" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000193 ! abdominal tracheal primordium 4 (Drosophila) relationship: part_of FBbt:00000025 ! abdominal segment 4 (Drosophila) [Term] id: FBbt:00005032 name: tracheal metamere 7 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A5." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr7" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000194 ! abdominal tracheal primordium 5 (Drosophila) relationship: part_of FBbt:00000026 ! abdominal segment 5 (Drosophila) [Term] id: FBbt:00005033 name: tracheal metamere 8 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A6." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr8" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000195 ! abdominal tracheal primordium 6 (Drosophila) relationship: part_of FBbt:00000027 ! abdominal segment 6 (Drosophila) [Term] id: FBbt:00005034 name: tracheal metamere 9 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A7." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr9" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: develops_from FBbt:00000196 ! abdominal tracheal primordium 7 (Drosophila) relationship: part_of FBbt:00000028 ! abdominal segment 7 (Drosophila) [Term] id: FBbt:00005035 name: tracheal metamere 10 (Drosophila) namespace: fly_anatomy.ontology def: "The tracheal system of A8." [FBC:DOS] comment: Note that terminal tracheation by each tracheal metamere extends beyond its segment of origin. subset: cur ! cur synonym: "Tr10" RELATED [] synonym: "tracheal hemisegment" RELATED [] is_a: FBbt:00005025 ! tracheal metamere (Drosophila) relationship: part_of FBbt:00000029 ! abdominal segment 8 (Drosophila) [Term] id: FBbt:00005036 name: tracheal pit (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000198 alt_id: FBbt:00005572 alt_id: FBbt:00005573 def: "Pit formed by the invagination of a tracheal placode. Invagination of the placode begins during stage 11. Branches begin to bud from the pit during stage 11, with most major branches apparent by mid-stage 12. The pit closes over during by 13." [FlyBase:FBrf0064787] comment: Note, some authors refer to tracheal pits as tracheal sacs. This ontology avoids this nomenclature in order to avoid confusion with terms referring to the tracheal air sacs of the adult. subset: cur ! cur synonym: "embryonic tracheal pit" EXACT [] synonym: "tracheal sac" EXACT [FlyBase:FBrf0147036] is_a: FBbt:00005037 ! tracheal primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00005037 name: tracheal primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium of a single tracheal metamere of the embryonic/larval tracheal system from its appearance as a placode during stage 11 to the completion of fusion with adjacent tracheal metameres in stage 15/16. There are 10 pairs of tracheal primordia - one pair in each segment from T2 to A8. Each tracheal primordium originates as a slight depression in the lateral ectoderm during stage 10 known as a tracheal placode. During stage 11, these placodes invaginate to form tracheal pits that elongate and branch. These pits close over during stage 13. Fusion of tracheal primordia begins at stage 14 with fusion of the dorsal trunk primordia and is complete by early stage 16." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 TrachP" EXACT [FBC:ds555] synonym: "TrachP3" RELATED [] synonym: "tracheal placode" RELATED [] is_a: FBbt:00007046 ! dorsal ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00000112 ! dorsal ectoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005569 ! presumptive embryonic/larval tracheal system (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00005039 name: embryonic/larval tracheocyte (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval tracheal cell" RELATED [] synonym: "larval tracheocyte" EXACT [] is_a: CL:0000307 ! tracheal epithelial cell [Term] id: FBbt:00005040 name: adult tracheocyte (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheocyte (FBbt:00005038) that is part of some adult (FBbt:00003004)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "adult tracheal cell" RELATED [] is_a: CL:0000307 ! tracheal epithelial cell relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00005041 name: tracheal precursor cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: FBbt:00005042 name: imaginal tracheoblast (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "tracheal histoblast" RELATED [] is_a: FBbt:00005605 ! imaginal tracheal precursor (Drosophila) relationship: develops_from FBbt:00005036 ! tracheal pit (Drosophila) relationship: develops_from FBbt:00005041 ! tracheal precursor cell (Drosophila) [Term] id: FBbt:00005044 name: mestracheon (Drosophila) namespace: fly_anatomy.ontology def: "Membrane that surrounds some tracheoles, separating them from the cytoplasm of the surrounding tracheolar cell." [FlyBase:FBrf0088947] subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00005048 ! tracheolar cell (Drosophila) [Term] id: FBbt:00005045 name: taenidium (Drosophila) namespace: fly_anatomy.ontology def: "A thread-like cuticular substructure that runs along the length a taenidial fold, just below the surface of the tracheal lumen." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "taenidia" EXACT [] is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of FBbt:00005046 ! taenidial fold (Drosophila) [Term] id: FBbt:00005046 name: taenidial fold (Drosophila) namespace: fly_anatomy.ontology def: "A specialization of the cuticular lining of the trachea consisting of annular or helical ridges that project into the tracheal lumen (their precise pattern varies along trachea). They prevent the collapse of branches while allowing them to expand and contract along their length, like the corrugated hose of a vacuum cleaner." [FlyBase:FBrf0064787] subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of UBERON:0003127 ! open tracheal system trachea [Term] id: FBbt:00005047 name: tracheole (Drosophila) namespace: fly_anatomy.ontology def: "Terminal branch of the tracheal system. Tracheoles consist of fine cuticular tubes (around 1 micrometre in diameter or less) located within individual tracheolar cells." [FlyBase:FBrf0064787, FlyBase:FBrf0087684, FlyBase:FBrf0088947] subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00005048 ! tracheolar cell (Drosophila) [Term] id: FBbt:00005048 name: tracheolar cell (Drosophila) namespace: fly_anatomy.ontology def: "Specialized cell of the tracheal system that forms the secondary and terminal branches (tracheoles) of the tracheal tree. Each forms a secondary branch of a primary trachea. This secondary branch itself branches into multiple tracheoles within fine cytoplasmic projections that invade (tracheate) target tissues. Tracheolar cells are the main site of respiratory gaseous exchange within the tracheal system." [FlyBase:FBrf0064787, FlyBase:FBrf0088947] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: develops_from FBbt:00005053 ! terminal tracheal cell (Drosophila) relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: FBbt:00005049 name: tracheal node (Drosophila) namespace: fly_anatomy.ontology def: "Part of the tracheal system where 2 tracheal metameres are connected by a tracheal fusion. Tracheal nodes have a distinctive cuticular lining and are populated by tracheal node cells." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "tracheal anastomosis" EXACT [] is_a: UBERON:0003127 ! open tracheal system trachea [Term] id: FBbt:00005050 name: tracheal node cell (Drosophila) namespace: fly_anatomy.ontology def: "Specialized tracheocyte found at tracheal nodes. These cells play a critical role in fragmentation of the tracheal cuticle during moults and in remodelling of the tracheal epithelium during metamorphosis." [FlyBase:FBrf0064787] subset: cur ! cur is_a: CL:0000307 ! tracheal epithelial cell relationship: develops_from FBbt:00005052 ! tracheal fusion cell (Drosophila) relationship: part_of FBbt:00005049 ! tracheal node (Drosophila) [Term] id: FBbt:00005051 name: tracheal tip cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell at the tip of a developing trachea." [FBC:DOS] subset: cur ! cur synonym: "pantip cell" EXACT [FlyBase:FBrf0087684] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) [Term] id: FBbt:00005052 name: tracheal fusion cell (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal tip cell that mediates the fusion of tracheal branches during embryogenesis and later develops into a node cell." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "homotip tracheal tip cell" RELATED [FlyBase:FBrf0064787] is_a: FBbt:00005051 ! tracheal tip cell (Drosophila) [Term] id: FBbt:00005053 name: terminal tracheal cell (Drosophila) namespace: fly_anatomy.ontology def: "Tracheal tip cell that does not fuse with other trachea, but instead develops into a tracheolar cell - forming secondary trachea and tracheoles." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "heterotip tracheal tip cell" RELATED [FlyBase:FBrf0064787] is_a: FBbt:00005051 ! tracheal tip cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00017025 ! secondary branch/tracheole primordium (Drosophila) [Term] id: FBbt:00005054 name: spiracle (Drosophila) namespace: fly_anatomy.ontology def: "Opening of the tracheal system on the surface of the body." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: FBbt:00005063 name: hemocyte (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0002323 ! body cavity [Term] id: FBbt:00005064 name: melanotic mass (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "melanotic tumor" RELATED [] synonym: "pseudotumor" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00005063 ! hemocyte (Drosophila) relationship: part_of UBERON:0001009 ! circulatory system [Term] id: FBbt:00005065 name: adipose system (Drosophila) namespace: fly_anatomy.ontology def: "The system of organs and cells involved in fat storage." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0000467 ! anatomical system [Term] id: FBbt:00005067 name: fat body primordium (Drosophila) namespace: fly_anatomy.ontology def: "The fat body primordium after the gonadal sheath primordium splits from it during stage 14. During late embryogenesis, various holes and clefts form, giving the fat body its larval form. The cells of this primordium do not accumulate fat during their differentiation (this only happens in the larval fat body)." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "fat body specific anlage" RELATED [] is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005520 ! fat body/gonad primordium (Drosophila) [Term] id: FBbt:00005070 name: visceral muscle (Drosophila) namespace: fly_anatomy.ontology def: "The visceral musculature comprises circular and longitudinal fibers which surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: cur ! cur is_a: CL:0000187 ! muscle cell relationship: part_of UBERON:0000383 ! musculature of body [Term] id: FBbt:00005071 name: longitudinal visceral muscle fiber (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005075 ! muscle fiber (Drosophila) relationship: part_of FBbt:00000480 ! longitudinal muscle (Drosophila) [Term] id: FBbt:00005072 name: circular visceral muscle fiber (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "circular visceral muscle fiber" EXACT [] is_a: FBbt:00005075 ! muscle fiber (Drosophila) relationship: develops_from FBbt:00017015 ! circular visceral muscle primordium (Drosophila) [Term] id: FBbt:00005075 name: muscle fiber (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005070 ! visceral muscle (Drosophila) [Term] id: FBbt:00005076 name: myofibril namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0030016. ds060616. subset: cur ! cur [Term] id: FBbt:00005077 name: sarcomere namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0030017 . ds060616. subset: cur ! cur [Term] id: FBbt:00005078 name: A band namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0031672 . ds060616. subset: cur ! cur [Term] id: FBbt:00005079 name: Z disc namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0030018 . ds060616. subset: cur ! cur [Term] id: FBbt:00005080 name: I band namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0031674 . ds060616. subset: cur ! cur [Term] id: FBbt:00005081 name: thick filament namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use: striated muscle thick filament ; GO:0005863 . ds060616. subset: cur ! cur [Term] id: FBbt:00005082 name: thin filament namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use: striated muscle thin filament ; GO:0005865 . ds060616. subset: cur ! cur [Term] id: FBbt:00005084 name: muscle founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000056 ! myoblast relationship: part_of FBbt:00005518 ! somatic muscle primordium (Drosophila) [Term] id: FBbt:00005085 name: fusion competent cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000056 ! myoblast relationship: part_of FBbt:00005518 ! somatic muscle primordium (Drosophila) [Term] id: FBbt:00005086 name: tubular muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005090 ! muscle structure [Term] id: FBbt:00005087 name: synchronous muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005090 ! muscle structure [Term] id: FBbt:00005088 name: asynchronous muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0005090 ! muscle structure [Term] id: FBbt:00005089 name: muscle attachment site (Drosophila) namespace: fly_anatomy.ontology def: "The place where the muscle system attaches to the body wall." [FBC:gg] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00100290 ! endocuticular specialization (Drosophila) relationship: part_of UBERON:0000383 ! musculature of body [Term] id: FBbt:00005090 name: tendon cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00005089 ! muscle attachment site (Drosophila) [Term] id: FBbt:00005091 name: apodeme (Drosophila) namespace: fly_anatomy.ontology def: "A cuticular ingrowth of the endoskeleton, sometimes only a peg, frequently ridge-like, and often serving as a muscle attachment site. Does not generally correspond to superficial invaginations." [FlyBase:FBrf0111704, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00100290 ! endocuticular specialization (Drosophila) relationship: part_of FBbt:00005089 ! muscle attachment site (Drosophila) [Term] id: FBbt:00005092 name: tonofibrilla (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000383 ! musculature of body [Term] id: FBbt:00005096 name: stomatogastric nervous system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007330 ! organ system subdivision (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00005097 name: ventral nervous system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007330 ! organ system subdivision (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00005104 name: connective (Drosophila) namespace: fly_anatomy.ontology def: "A longitudinally oriented tract that connects two or more neuromeres." [FBC:BrainName, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) [Term] id: FBbt:00005108 name: perikaryon namespace: fly_anatomy.ontology def: "The cytoplasm of the soma of a neuron, surrounding the nucleus (plural:perikarya)." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0043204 . ds060616. subset: cur ! cur [Term] id: FBbt:00005109 name: axon namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0030424 . ds060616. subset: cur ! cur [Term] id: FBbt:00005111 name: dendritic tree (Drosophila) namespace: fly_anatomy.ontology def: "The arborization of dendrites, defined by the number, position, branching structure, density and stratification of its branches. Dense body. Synaptic ribbon at neuromuscular junction." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur synonym: "dendritic arbor" RELATED [] is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001023 ! dendrite [Term] id: FBbt:00005112 name: nerve terminal (Drosophila) namespace: fly_anatomy.ontology def: "The output region of a neuron, generally presynaptic but in insects often also locally postsynaptic. Typically containing large numbers of mitochondria in addition to presynaptic organelles." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur synonym: "terminal" RELATED [] is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000540 ! neuron [Term] id: FBbt:00005115 name: end plate (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001025 ! synapse [Term] id: FBbt:00005116 name: bouton (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001025 ! synapse [Term] id: FBbt:00005117 name: t-bar (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00005116 ! bouton (Drosophila) [Term] id: FBbt:00005118 name: synaptic vesicle namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0008021 . ds060616. subset: cur ! cur [Term] id: FBbt:00005119 name: synaptic cleft namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0043083 . ds060616. subset: cur ! cur [Term] id: FBbt:00005120 name: postsynaptic membrane namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0045211. ds060616. For subsynaptic reticulum (formerly and incorrectly a synonym for postsynaptic membrane), please use GO:0071212 subset: cur ! cur synonym: "SSR" RELATED [] synonym: "subsynaptic reticulum" RELATED [] [Term] id: FBbt:00005121 name: intramembranous particle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001025 ! synapse [Term] id: FBbt:00005122 name: presynaptic ribbon (Drosophila) namespace: fly_anatomy.ontology def: "An organelle at the input site of a synapse, the presumed structure for vesicle exocytosis, comprising a central pedestal but often with several components (e.g. a platform in recent groups of Diptera)." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur synonym: "presynaptic specialisation" RELATED [] is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001025 ! synapse [Term] id: FBbt:00005123 name: motor neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuron that sends movement impulses to the muscle system." [FBC:gg] comment: Needs link to cell.obo term. subset: EmbDevSlim ! EmbDevSlim subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: CL:0000540 ! neuron relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00005129 name: columnar neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron of the optic lobe whose primary projection extends along the long axis of a single optic column to which it, but not its collaterals, is restricted." [FlyBase:FBrf0049410] comment: This definition follows Fischbach and Dittrich (1989) in classifying based on the primary projection. A neuron with broad and extensive collaterals with terminals in adjacent columns is still classified as a columnar neuron under this definition. Other treatments have classified such neurons as tangential. subset: cur ! cur is_a: CL:0000099 ! interneuron is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) [Term] id: FBbt:00005131 name: dopaminergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some dopamine (CHEBI:18243)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "DA neuron" EXACT [FlyBase:FBrf0208427] synonym: "dopamine neuron" EXACT [] is_a: FBbt:00007368 ! aminergic neuron (Drosophila) [Term] id: FBbt:00005132 name: dorso-lateral dopaminergic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dorso-lateral dopamine neuron" EXACT [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) [Term] id: FBbt:00005134 name: ventro-lateral serotonergic neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ventral lateral serotonin neuron" EXACT [FlyBase:FBrf0100717] synonym: "ventro-lateral serotonin neuron" EXACT [] synonym: "ventrolateral serotonergic neuron" EXACT [] synonym: "ventrolateral serotonin neuron" EXACT [] is_a: CL:0000850 ! serotonergic neuron [Term] id: FBbt:00005135 name: motor nerve namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005105 ! nerve consider: FBbt:00005123 ! motor neuron (Drosophila) comment: Obsoleted due to difficulty in classifying nerves as motor versus sensory. Consider using motor neuron or nerve. subset: cur ! cur [Term] id: FBbt:00005136 name: sensory nerve namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005105 ! nerve consider: FBbt:00005124 ! sensory neuron comment: Obsoleted due to difficulty in classifying nerves as motor versus sensory. Consider using sensory neuron or nerve. subset: cur ! cur [Term] id: FBbt:00005138 name: ganglion cell (Drosophila) namespace: fly_anatomy.ontology def: "The neuron of a ganglion." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur is_a: CL:0000540 ! neuron relationship: develops_from CL:0000469 ! ganglion mother cell relationship: part_of UBERON:0000045 ! ganglion [Term] id: FBbt:00005141 name: actin cortex of neuromere (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "rind" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0004732 ! segmental subdivision of nervous system [Term] id: FBbt:00005150 name: growth cone namespace: fly_anatomy.ontology is_obsolete: true comment: Made obsolete because of redundancy with GO cell component term. Please use GO:0030426 . ds060616. subset: cur ! cur [Term] id: FBbt:00005152 name: glial cell of the perineurium (Drosophila) namespace: fly_anatomy.ontology def: "Any glial cell (FBbt:00005144) that is part of some perineurium (FBbt:00007090)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000124 ! glial cell (sensu Nematoda and Protostomia) relationship: part_of FBbt:00007090 ! perineurium (Drosophila) [Term] id: FBbt:00005153 name: perineurial sheath glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Any glial cell (FBbt:00005144) that is part of some perineurial sheath (FBbt:00007089)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "apical glial cell" RELATED [] synonym: "outer perineural sheath cell" EXACT [] synonym: "perineural cell" RELATED [] synonym: "perineurial glia" RELATED [] synonym: "perineurial sheath cell" EXACT [] is_a: FBbt:00005152 ! glial cell of the perineurium (Drosophila) relationship: part_of FBbt:00007089 ! perineurial sheath (Drosophila) [Term] id: FBbt:00005156 name: mechanosensory sensory organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that functions in (some) detection of mechanical stimulus involved in sensory perception (GO:0050974)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000020 ! sense organ [Term] id: FBbt:00005158 name: olfactory sensory organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that functions in (some) detection of chemical stimulus involved in sensory perception of smell (GO:0050911)." [FBC:auto_generated_definition] subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: UBERON:0000005 ! chemosensory organ [Term] id: FBbt:00005160 name: thermosensitive sensory organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that functions in (some) detection of temperature stimulus involved in sensory perception (GO:0050961)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0000020 ! sense organ [Term] id: FBbt:00005161 name: hygrosensitive sensory organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000020 ! sense organ [Term] id: FBbt:00005163 name: sensory organ cell (Drosophila) namespace: fly_anatomy.ontology def: "Any somatic cell (FBbt:00100318) that is part of some sense organ (FBbt:00005155)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "SOC" RELATED [] is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0000020 ! sense organ [Term] id: FBbt:00005164 name: external sensory organ precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "Precursor cell that gives rise to an external sensory organ." [FlyBase:FBrf0111371] subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) [Term] id: FBbt:00005165 name: external sensory organ precursor cell I (Drosophila) namespace: fly_anatomy.ontology def: "First-order precursor cell: mother of all the clonally related cells of an external sensory organ." [FlyBase:FBrf0049554, FlyBase:FBrf0111371, FlyBase:FBrf0158845] subset: cur ! cur synonym: "SOP" EXACT [] synonym: "SOPI" RELATED [] synonym: "founder cell" RELATED [] synonym: "sensory mother cell" RELATED [] is_a: FBbt:00005164 ! external sensory organ precursor cell (Drosophila) [Term] id: FBbt:00005166 name: external sensory organ precursor cell IIa (Drosophila) namespace: fly_anatomy.ontology def: "Second-order precursor cell. It develops from external sensory organ precursor cell I, and divides to give rise to the tormogen cell and the trichogen cell of an external sensory organ." [FlyBase:FBrf0049554, FlyBase:FBrf0111371] subset: cur ! cur synonym: "SOPIIa" RELATED [] is_a: FBbt:00005164 ! external sensory organ precursor cell (Drosophila) relationship: develops_from FBbt:00005165 ! external sensory organ precursor cell I (Drosophila) [Term] id: FBbt:00005167 name: external sensory organ precursor cell IIb (Drosophila) namespace: fly_anatomy.ontology def: "Second-order precursor cell. It develops from external sensory organ precursor cell I, and divides to give rise to the thecogen cell and the neuron of an external sensory organ." [FlyBase:FBrf0049554, FlyBase:FBrf0111371] subset: cur ! cur synonym: "SOPIIb" RELATED [] synonym: "pIIb" RELATED [] is_a: FBbt:00005164 ! external sensory organ precursor cell (Drosophila) relationship: develops_from FBbt:00005165 ! external sensory organ precursor cell I (Drosophila) [Term] id: FBbt:00005168 name: external sensory organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "eo" RELATED [] synonym: "es" RELATED [] synonym: "sensillum" RELATED [] is_a: UBERON:0000020 ! sense organ relationship: develops_from FBbt:00005164 ! external sensory organ precursor cell (Drosophila) [Term] id: FBbt:00005170 name: thecogen dendritic cap (Drosophila) namespace: fly_anatomy.ontology def: "A cuticle-like matrix secreted by the thecogen cell around the tip of the eo dendrite(s)." [FlyBase:FBrf0089570] comment: Formerly, erroneously called 'thecogen dendritic cap cell'. subset: cur ! cur is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of FBbt:00005173 ! thecogen cell (Drosophila) [Term] id: FBbt:00005172 name: socket (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000372 ! tormogen cell [Term] id: FBbt:00005173 name: thecogen cell (Drosophila) namespace: fly_anatomy.ontology def: "The eo support cell that makes the thecogen dendritic cap - a cuticle-like matrix around the tip of the eo-dendrite and which encloses the soma of the eo-neuron." [FlyBase:FBrf0049554, FlyBase:FBrf0089570, FlyBase:FBrf0111371] comment: Note - the term 'sheath cell' is problematic as it is sometimes used to refer to the thecogen cell and sometimes to the eo glial cell. ds060308. subset: cur ! cur synonym: "sheath cell" BROAD [] synonym: "support cell" RELATED [] is_a: FBbt:00007254 ! eo support cell (Drosophila) relationship: develops_from FBbt:00006022 ! external sensory organ precursor cell IIIb (Drosophila) [Term] id: FBbt:00005174 name: eo neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron that is part of an eo-sensillum and whose dendrite innervates the cuticular external sensory structure of that sensillum." [FlyBase:FBrf0049554, FlyBase:FBrf0111371] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "Type I neuron" RELATED [] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: develops_from FBbt:00006022 ! external sensory organ precursor cell IIIb (Drosophila) relationship: part_of FBbt:00007232 ! eo-type sensillum (Drosophila) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00005175 name: eo dendrite (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001023 ! dendrite relationship: part_of FBbt:00005174 ! eo neuron (Drosophila) [Term] id: FBbt:00005176 name: eo sensory structure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of CL:0000374 ! trichogen cell [Term] id: FBbt:00005177 name: chaeta (Drosophila) namespace: fly_anatomy.ontology def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, ISBN:978-3-11-014898-5] comment: This term is sometimes used to refer to the 'bristle-like' outgrowth only, but is here used to refer to the entire sensillum of which it is a part. subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005178 name: taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "chemosensory chaeta" RELATED [] is_a: FBbt:00005177 ! chaeta (Drosophila) is_a: UBERON:0003212 ! gustatory organ [Term] id: FBbt:00005179 name: macrochaeta (Drosophila) namespace: fly_anatomy.ontology def: "A long, unicellular, setiform outgrowth that is strongly chitinized and may be in connection with a sensory nerve." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "bristle" RELATED [] synonym: "setae" RELATED [] is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) [Term] id: FBbt:00005180 name: bract (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004992 ! adult cuticle (Drosophila) [Term] id: FBbt:00005181 name: mechanosensory chaeta (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that functions in (some) detection of mechanical stimulus involved in sensory perception (GO:0050974)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005156 ! mechanosensory sensory organ (Drosophila) is_a: FBbt:00005177 ! chaeta (Drosophila) [Term] id: FBbt:00005182 name: microchaeta (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "hair" RELATED [] synonym: "setulae" RELATED [] is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) [Term] id: FBbt:00005183 name: sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology def: "An eo-type sensillum in which the cuticular part typically has the form of a papilla, bell or hollow cone receiving the distal process of a sensory neuron." [FlyBase:FBrf0111704] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "campaniform sensillum" EXACT [] synonym: "papilla" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005184 name: sensillum trichodeum (Drosophila) namespace: fly_anatomy.ontology def: "A sensillum of which the external part is a seta." [FlyBase:FBrf0111704] subset: cur ! cur synonym: "hair sensillum" RELATED [] synonym: "trichoid sensillum" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005185 name: sensillum basiconicum (Drosophila) namespace: fly_anatomy.ontology def: "A eo-type sensillum in which the external part has the form of a minute projecting cone or peg." [FlyBase:FBrf0111704] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "basiconic sensillum" EXACT [] synonym: "peg" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005186 name: small sensillum basiconicum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "short s.basiconica" EXACT [FlyBase:FBrf0141649] synonym: "short sensilla basiconica" EXACT [FlyBase:FBrf0141649] is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) [Term] id: FBbt:00005187 name: receptor lymph space of small sensillum basiconicum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007347 ! sensillar lymph space (Drosophila) relationship: part_of FBbt:00005186 ! small sensillum basiconicum (Drosophila) [Term] id: FBbt:00005188 name: large sensillum basiconicum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005185 ! sensillum basiconicum (Drosophila) [Term] id: FBbt:00005189 name: receptor lymph space of large sensillum basiconicum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007347 ! sensillar lymph space (Drosophila) relationship: part_of FBbt:00005188 ! large sensillum basiconicum (Drosophila) [Term] id: FBbt:00005190 name: sensillum coeloconicum (Drosophila) namespace: fly_anatomy.ontology def: "A general name for various or olfactory gustatory sense organs of conical shape in which the external process is sunken in a cavity of the body wall. Usually found in the extra-oral cavity or other mouthparts." [FlyBase:FBrf0111704, ISBN:978-3-11-014898-5] subset: cur ! cur synonym: "coeloconic sensillum" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005191 name: grooved sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007231 ! external sensillum (Drosophila) [Term] id: FBbt:00005192 name: blunt-tipped sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007231 ! external sensillum (Drosophila) [Term] id: FBbt:00005193 name: pit sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007231 ! external sensillum (Drosophila) [Term] id: FBbt:00005194 name: knob sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005195 name: spot sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007231 ! external sensillum (Drosophila) [Term] id: FBbt:00005196 name: peg sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005197 name: slit papilla sensillum (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) [Term] id: FBbt:00005198 name: Keilin's organ (Drosophila) namespace: fly_anatomy.ontology def: "A sensillum of the embryonic/larval thorax whose external sensory structure consists of a cluster of three hairs. It is innervated by 5 dendrites." [FlyBase:FBrf0045359] subset: cur ! cur synonym: "Fusstummelsinnesorgan" RELATED [] synonym: "trihair" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00005199 name: Kolbchen (Drosophila) namespace: fly_anatomy.ontology def: "Club-like sensory structure found in the thoracic segments of the embryo/larva." [FlyBase:FBrf0041814, FlyBase:FBrf0045359] comment: Dambly-Chaudiere and Ghysen (1986) argue that since the Kolbchen is not black (except when viewed with phase contrast) and is more than a pit, the original name of Kolbchen (meaning 'small club') is preferable to 'pit' or 'black dot'. subset: cur ! cur synonym: "B" BROAD [FlyBase:FBrf0034076] synonym: "Kolbchen, k" RELATED [FlyBase:FBrf0002274] synonym: "black dot" RELATED [FlyBase:FBrf0041814] synonym: "black organ" RELATED [] synonym: "pit" RELATED [] synonym: "ventral pit" RELATED [] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) is_a: FBbt:00007244 ! embryonic/larval thoracic sensillum (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) [Term] id: FBbt:00005200 name: denticle (Drosophila) namespace: fly_anatomy.ontology def: "A small tooth on the surface of the body." [ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00004983 ! embryonic/larval cuticle (Drosophila) [Term] id: FBbt:00005201 name: denticle belt (Drosophila) namespace: fly_anatomy.ontology def: "Multiple rows of denticles located on the ventral surface of the larva. The orientation of the denticles within the belt changes from segment to segment." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "setal belt" RELATED [] synonym: "ventral denticle belt" RELATED [] synonym: "ventral setae" RELATED [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00016012 ! denticle field (Drosophila) [Term] id: FBbt:00005202 name: denticle row 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most row of denticles in the ventral denticle belt." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:01005220 ! denticle row (Drosophila) [Term] id: FBbt:00005203 name: denticle row 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second most-anterior row of denticles in the ventral denticle belt." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:01005220 ! denticle row (Drosophila) [Term] id: FBbt:00005204 name: denticle row 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third from anterior-most row of denticles in the ventral denticle belt." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:01005220 ! denticle row (Drosophila) [Term] id: FBbt:00005205 name: denticle row 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth anterior-most row of denticles in the ventral denticle belt." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:01005220 ! denticle row (Drosophila) [Term] id: FBbt:00005206 name: denticle row 5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth anterior-most denticle row of the ventral denticle belt." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:01005220 ! denticle row (Drosophila) [Term] id: FBbt:00005207 name: denticle row 6 (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most, and sixth from anterior, row of denticles in the ventral denticle belt." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:01005220 ! denticle row (Drosophila) [Term] id: FBbt:00005208 name: dorsal denticle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "primary dorsal denticle" RELATED [] is_a: FBbt:00005200 ! denticle (Drosophila) [Term] id: FBbt:00005209 name: multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the PNS having multiple dendrites." [FlyBase:FBrf0080250] subset: cur ! cur synonym: "Type II neuron" EXACT [] synonym: "md" RELATED [] synonym: "md neuron" EXACT [] is_a: CL:0000101 ! sensory neuron relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00005210 name: multidendritic sensory organ precursor cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) [Term] id: FBbt:00005211 name: multidendritic dendrite (Drosophila) namespace: fly_anatomy.ontology def: "Any dendrite (FBbt:00005110) that is part of some multidendritic neuron (FBbt:00005209)." [FBC:auto_generated_definition] subset: cur ! cur is_a: UBERON:0001023 ! dendrite relationship: part_of FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00005212 name: bipolar dendrite neuron (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron with bipolar dendrites that grow in opposite directions without major side branches. These neurons are located inside the body and are often associated with muscles." [FlyBase:FBrf0047289] subset: cur ! cur synonym: "bd" RELATED [] is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00005213 name: dendritic arborizing neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sensory multidendritic neuron of the PNS with branching dendrites that spread directly below and in close association with the epidermal cell layer." [FlyBase:FBrf0047289, FlyBase:FBrf0089570, FlyBase:FBrf0148966] subset: cur ! cur synonym: "da" RELATED [] synonym: "da neuron" EXACT [] synonym: "da-md neuron" EXACT [FlyBase:FBrf0207099] synonym: "dendritic arborising neuron" EXACT [] is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00005214 name: tracheal innervating neuron (Drosophila) namespace: fly_anatomy.ontology def: "Multidendritic neuron with several dendritic branches that innervate trachea." [FlyBase:FBrf0047289] subset: cur ! cur synonym: "td" RELATED [] is_a: FBbt:00005209 ! multidendritic neuron (Drosophila) [Term] id: FBbt:00005216 name: chordotonal organ precursor cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001137 ! sensory mother cell (Drosophila) [Term] id: FBbt:00005218 name: scolopidial dendritic cap cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell that is part of a scolopidium and connects the scolopale to the endoskeleton." [FlyBase:FBrf0007734, FlyBase:FBrf0056378] subset: cur ! cur synonym: "attachment cell" RELATED [FlyBase:FBrf0056378] synonym: "scolopidial attachment cell" EXACT [FlyBase:FBrf0056378] is_a: FBbt:00005808 ! dendritic cap cell (Drosophila) relationship: part_of CL:0000382 ! scolopidium [Term] id: FBbt:00005220 name: hemangioblast (Drosophila) namespace: fly_anatomy.ontology def: "A cell type of the cardiogenic mesoderm whose progeny become cardial cells and hemocytes of the lymph gland." [PMID:15286786] subset: cur ! cur is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00005541 ! cardiogenic mesoderm (Drosophila) [Term] id: FBbt:00005223 name: scolopidial dendrite (Drosophila) namespace: fly_anatomy.ontology def: "Specialised dendrite of scolopidial neuron. Its distal end is a cilium, surrounded by a scolopale and terminating in a dendritic cap." [FlyBase:FBrf0056378, FlyBase:FBrf0098208] subset: cur ! cur is_a: UBERON:0001023 ! dendrite [Term] id: FBbt:00005224 name: abdominal 1 ventral sensillum campaniformium vc5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc5 (FBbt:00002903) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00005225 name: abdominal 2 ventral sensillum campaniformium vc5n (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc5 (FBbt:00002903) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00005226 name: abdominal 3 ventral sensillum campaniformium vc5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc5 (FBbt:00002903) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00005227 name: abdominal 4 ventral sensillum campaniformium vc5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc5 (FBbt:00002903) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00005228 name: abdominal 5 ventral sensillum campaniformium vc5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc5 (FBbt:00002903) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00005229 name: abdominal 6 ventral sensillum campaniformium vc5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc5 (FBbt:00002903) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00005230 name: abdominal 7 ventral sensillum campaniformium vc5 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral sensillum campaniformium vc5 (FBbt:00002903) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00002903 ! abdominal ventral sensillum campaniformium vc5 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00005231 name: cone cell pigment granule (Drosophila) namespace: fly_anatomy.ontology def: "Any pigment granule (FBbt:00004234) that is part of some cone cell (FBbt:00004193)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of CL:0000306 ! crystallin accumulating cell [Term] id: FBbt:00005232 name: posterior cone cell pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005231 ! cone cell pigment granule (Drosophila) relationship: part_of FBbt:00004194 ! posterior cone cell (Drosophila) [Term] id: FBbt:00005233 name: anterior cone cell pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005231 ! cone cell pigment granule (Drosophila) relationship: part_of FBbt:00004195 ! anterior cone cell (Drosophila) [Term] id: FBbt:00005234 name: polar cone cell pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005231 ! cone cell pigment granule (Drosophila) relationship: part_of FBbt:00004196 ! polar cone cell (Drosophila) [Term] id: FBbt:00005235 name: equatorial cone cell pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005231 ! cone cell pigment granule (Drosophila) relationship: part_of FBbt:00004197 ! equatorial cone cell (Drosophila) [Term] id: FBbt:00005236 name: photoreceptor cell pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004234 ! pigment granule (Drosophila) relationship: part_of CL:0000210 ! photoreceptor cell [Term] id: FBbt:00005237 name: photoreceptor cell R1 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004213 ! photoreceptor cell R1 (Drosophila) [Term] id: FBbt:00005238 name: photoreceptor cell R2 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004215 ! photoreceptor cell R2 (Drosophila) [Term] id: FBbt:00005239 name: photoreceptor cell R3 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004217 ! photoreceptor cell R3 (Drosophila) [Term] id: FBbt:00005240 name: photoreceptor cell R4 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004219 ! photoreceptor cell R4 (Drosophila) [Term] id: FBbt:00005241 name: photoreceptor cell R5 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004221 ! photoreceptor cell R5 (Drosophila) [Term] id: FBbt:00005242 name: photoreceptor cell R6 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004223 ! photoreceptor cell R6 (Drosophila) [Term] id: FBbt:00005243 name: photoreceptor cell R7 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004225 ! photoreceptor cell R7 (Drosophila) [Term] id: FBbt:00005244 name: photoreceptor cell R8 pigment granule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005236 ! photoreceptor cell pigment granule (Drosophila) is_a: FBbt:00007372 ! retinal pigment granule (Drosophila) relationship: part_of FBbt:00004227 ! photoreceptor cell R8 (Drosophila) [Term] id: FBbt:00005246 name: midgut primordium (Drosophila) namespace: fly_anatomy.ontology def: "Any primordium that is a precursor of all or some part of the larval or adult midgut." [FBC:DOS] subset: cur ! cur is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005247 name: embryonic hemocyte primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0089570, FlyBase:FBrf0167476] subset: cur ! cur synonym: "hemocyte primordium" BROAD [] is_a: FBbt:00025999 ! head mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00007007 ! embryonic hemocyte anlage (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005248 name: prolamellocyte (Drosophila) namespace: fly_anatomy.ontology def: "An immature lamellocyte." [FlyBase:FBrf0167476] comment: Existence uncertain, may not differ from prohemocytes in general. subset: cur ! cur is_a: CL:0000385 ! prohemocyte (sensu Nematoda and Protostomia) [Term] id: FBbt:00005249 name: proplasmatocyte (Drosophila) namespace: fly_anatomy.ontology def: "An immature plasmatocyte." [FBC:DOS, FlyBase:FBrf0167476] comment: Existence uncertain, may not differ from prohemocytes in general. subset: cur ! cur is_a: CL:0000385 ! prohemocyte (sensu Nematoda and Protostomia) relationship: part_of FBbt:00017006 ! plasmatocyte primordium (Drosophila) [Term] id: FBbt:00005252 name: stomodeal invagination late (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur synonym: "anterior midgut invagination" RELATED [] is_a: FBbt:00005326 ! stomodeal invagination (Drosophila) relationship: develops_from FBbt:00000120 ! early stomodeal invagination (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00005254 name: embryonic/larval heart anchoring cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005256 def: "Cell situated immediately anterior to the ring gland, that anchors the cardiac outflow region of the embryonic/larval heart." [FlyBase:FBrf0167997] subset: cur ! cur synonym: "HANC" RELATED [] synonym: "larval heart anchoring cell" EXACT [] is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: develops_from FBbt:00005255 ! embryonic heart anchoring cell primordium (Drosophila) relationship: part_of FBbt:00001664 ! embryonic/larval circulatory system (Drosophila) [Term] id: FBbt:00005255 name: embryonic heart anchoring cell primordium (Drosophila) namespace: fly_anatomy.ontology def: "A group of cells at the distal tip of the frontal sac." [FlyBase:FBrf0167997] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00015247 ! dorsal head epidermis primordium (Drosophila) [Term] id: FBbt:00005257 name: cardiac outflow muscle (Drosophila) namespace: fly_anatomy.ontology def: "Muscles extending from the esophagus to the anterior aorta." [FlyBase:FBrf0167997] subset: cur ! cur synonym: "COM" RELATED [] is_a: FBbt:00000486 ! hypodermal muscle of head (Drosophila) [Term] id: FBbt:00005258 name: spermatocyte cyst (Drosophila) namespace: fly_anatomy.ontology def: "A male germline cyst containing 2 cyst cells surrounding 16-32 spermatocytes." [FBC:DOS] subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00007136 ! male germline cyst (Drosophila) [Term] id: FBbt:00005259 name: germinal proliferation center (Drosophila) namespace: fly_anatomy.ontology def: "Structure formed by the male germline stem cells, cyst progenitor cells and the hub around which they are clustered and to which they are attached. It is located at the apical (blind) end of the testis." [FlyBase:FBrf0024468, FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000473 ! testis [Term] id: FBbt:00005260 name: secondary spermatogonium (Drosophila) namespace: fly_anatomy.ontology def: "Male germline cell during its first 4 mitoses." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: CL:0000020 ! spermatogonium relationship: develops_from CL:0000020 ! spermatogonium [Term] id: FBbt:00005261 name: stage S1 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte [Term] id: FBbt:00005262 name: stage S2 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005261 ! stage S1 oocyte (Drosophila) [Term] id: FBbt:00005263 name: stage S3 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005262 ! stage S2 oocyte (Drosophila) [Term] id: FBbt:00005264 name: stage S4 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005263 ! stage S3 oocyte (Drosophila) [Term] id: FBbt:00005265 name: stage S5 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005264 ! stage S4 oocyte (Drosophila) [Term] id: FBbt:00005266 name: stage S6 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005265 ! stage S5 oocyte (Drosophila) [Term] id: FBbt:00005267 name: stage S7 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005266 ! stage S6 oocyte (Drosophila) [Term] id: FBbt:00005268 name: stage S8 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005267 ! stage S7 oocyte (Drosophila) [Term] id: FBbt:00005269 name: stage S9 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005268 ! stage S8 oocyte (Drosophila) [Term] id: FBbt:00005270 name: stage S10 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005269 ! stage S9 oocyte (Drosophila) [Term] id: FBbt:00005271 name: stage S10A oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005270 ! stage S10 oocyte (Drosophila) [Term] id: FBbt:00005272 name: stage S10B oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005271 ! stage S10A oocyte (Drosophila) [Term] id: FBbt:00005273 name: stage S11 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005272 ! stage S10B oocyte (Drosophila) [Term] id: FBbt:00005274 name: stage S12 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005273 ! stage S11 oocyte (Drosophila) [Term] id: FBbt:00005275 name: stage S12A oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005274 ! stage S12 oocyte (Drosophila) [Term] id: FBbt:00005276 name: stage S12B oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005275 ! stage S12A oocyte (Drosophila) [Term] id: FBbt:00005277 name: stage S12C oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005276 ! stage S12B oocyte (Drosophila) [Term] id: FBbt:00005278 name: stage S13 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005277 ! stage S12C oocyte (Drosophila) [Term] id: FBbt:00005279 name: stage S13A oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005278 ! stage S13 oocyte (Drosophila) [Term] id: FBbt:00005280 name: stage S13B oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005279 ! stage S13A oocyte (Drosophila) [Term] id: FBbt:00005281 name: stage S13C oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005280 ! stage S13B oocyte (Drosophila) [Term] id: FBbt:00005282 name: stage S13D oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005281 ! stage S13C oocyte (Drosophila) [Term] id: FBbt:00005283 name: stage S14 oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005282 ! stage S13D oocyte (Drosophila) [Term] id: FBbt:00005284 name: stage S14A oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005283 ! stage S14 oocyte (Drosophila) [Term] id: FBbt:00005285 name: stage S14B oocyte (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0021038] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the oocyte at this stage should be referred to by combining the anatomy term \"oocyte\" with the appropriate oogenesis stage term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: CL:0000023 ! oocyte relationship: develops_from FBbt:00005284 ! stage S14A oocyte (Drosophila) [Term] id: FBbt:00005286 name: primary spermatocyte (Drosophila) namespace: fly_anatomy.ontology def: "Male germ cells from the end of the S-phase that precedes meiosis I to the end of meiosis I. This S-phase occurs very early in the 16 cell cyst stage so almost all 16 cell cysts are at the primary spermatocyte stage." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: CL:0000017 ! spermatocyte relationship: part_of FBbt:00004938 ! primary spermatocyte cyst (Drosophila) [Term] id: FBbt:00005287 name: spermatid cyst (Drosophila) namespace: fly_anatomy.ontology def: "A male germline cyst consisting of 2 cyst cells and 64 spermatids." [FlyBase:FBrf0167476] subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00007136 ! male germline cyst (Drosophila) relationship: develops_from FBbt:00007138 ! spermatogonial cyst (Drosophila) [Term] id: FBbt:00005288 name: fertilized egg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000025 ! egg [Term] id: FBbt:00005289 name: pre-elongation spermatid (Drosophila) namespace: fly_anatomy.ontology def: "One of 64 haploid germ-cells present in the spermatid cyst from the end of meiosis 2 to the beginning of tail elongation." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur synonym: "early spermatid" RELATED [] is_a: CL:0000018 ! spermatid [Term] id: FBbt:00005290 name: pre-blastoderm embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0000922 ! embryo [Term] id: FBbt:00005291 name: stage 1 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Nuclear divisions 1 and 2. Duration at 25 degrees C: approximately 25 minutes (0-25 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00000054 ! cleavage stage embryo (Drosophila) is_a: FBbt:00005290 ! pre-blastoderm embryo (Drosophila) [Term] id: FBbt:00005292 name: cycle 1 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005291 ! stage 1 embryo (Drosophila) [Term] id: FBbt:00005293 name: stage 2 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Nuclear divisions 3-8. The egg cytoplasm contracts producing a clear separation from the vitelline membrane and empty spaces at the anterior and posterior. The cleavage nuclei migrate towards the periphery. Duration at 25 degrees C approximately 40 minutes (25-65 minutes AEL)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00000054 ! cleavage stage embryo (Drosophila) is_a: FBbt:00005290 ! pre-blastoderm embryo (Drosophila) relationship: develops_from FBbt:00005291 ! stage 1 embryo (Drosophila) [Term] id: FBbt:00005294 name: cycle 2 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005295 name: cycle 3 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005296 name: cycle 4 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005297 name: cycle 5 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005298 name: cycle 6 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005299 name: cycle 7 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005300 name: cycle 8 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005301 name: stage 3 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Nuclear division 9. The cleavage nuclei complete there migration to the periphery. Polar buds form at the posterior pole and divide once. Duration at 25 degrees C: approximately 15 minutes (65-80 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00000054 ! cleavage stage embryo (Drosophila) is_a: FBbt:00005305 ! syncytial blastoderm embryo (Drosophila) relationship: develops_from FBbt:00005293 ! stage 2 embryo (Drosophila) [Term] id: FBbt:00005302 name: cycle 9 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005301 ! stage 3 embryo (Drosophila) [Term] id: FBbt:00005303 name: cycle 10 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005301 ! stage 3 embryo (Drosophila) [Term] id: FBbt:00005304 name: blastoderm embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 3-5." [FBC:DOS] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0000922 ! embryo [Term] id: FBbt:00005305 name: syncytial blastoderm embryo (Drosophila) namespace: fly_anatomy.ontology def: "A blastoderm embryo prior to cellularization (corresponds to embryonic stages 3 and 4)." [FBC:DOS, FBC:gg] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: cur ! cur subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005304 ! blastoderm embryo (Drosophila) [Term] id: FBbt:00005306 name: stage 4 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Nuclear division 10-13. Polar buds divide twice and become tightly grouped at the posterior pole by the end of this stage. Nuclei visible at the rim of the embryo. Stage 4 ends with the beginning of cellularization. Duration at 25 degrees C: approximately 50 minutes (80-130 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00000054 ! cleavage stage embryo (Drosophila) is_a: FBbt:00005305 ! syncytial blastoderm embryo (Drosophila) relationship: develops_from FBbt:00005301 ! stage 3 embryo (Drosophila) [Term] id: FBbt:00005307 name: cycle 11 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005306 ! stage 4 embryo (Drosophila) [Term] id: FBbt:00005308 name: cycle 12 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005306 ! stage 4 embryo (Drosophila) [Term] id: FBbt:00005309 name: cycle 13 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005306 ! stage 4 embryo (Drosophila) [Term] id: FBbt:00005310 name: elongation stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A spermatid which is no longer round, in which the nuclear shape changes from round to needle-shaped, and in which the Nebenkern unfolds, splits into two parts, and elongates along with the growing axoneme." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur synonym: "intermediate spermatid" RELATED [] is_a: CL:0000018 ! spermatid relationship: develops_from FBbt:00005289 ! pre-elongation spermatid (Drosophila) [Term] id: FBbt:00005311 name: stage 5 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 5 begins when cellularization starts. Near the end of this stage the pole cells begin to migrate dorsally and ventral midline cells acquire an irregular, wavy appearance. Stage 5 ends when ventral furrow formation becomes apparent. Duration at 25 degrees C: approximately 40 minutes (130-170 minutes after egg laying)." [FBC:DOS, FBC:ma, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "cellular blastoderm embryo" RELATED [] is_a: FBbt:00005304 ! blastoderm embryo (Drosophila) relationship: develops_from FBbt:00005306 ! stage 4 embryo (Drosophila) [Term] id: FBbt:00005312 name: cycle 14 embryo (Drosophila) namespace: fly_anatomy.ontology subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00005313 name: cycle 14A embryo (Drosophila) namespace: fly_anatomy.ontology subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00005314 name: cycle 14B embryo (Drosophila) namespace: fly_anatomy.ontology subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00005315 name: cycle 15 embryo (Drosophila) namespace: fly_anatomy.ontology subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005321 ! extended germ band embryo (Drosophila) [Term] id: FBbt:00005316 name: cycle 16 embryo (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0000922 ! embryo [Term] id: FBbt:00005317 name: gastrula embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 6-8, during which complex morphogenetic movements result in the formation of the three germ layers; ectoderm, mesoderm and endoderm." [FBC:DOS, FBC:gg] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0000922 ! embryo relationship: develops_from FBbt:00005304 ! blastoderm embryo (Drosophila) [Term] id: FBbt:00005318 name: stage 6 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 6 begins when the ventral furrow becomes apparent, an event which is followed rapidly by the formation of the cephalic furrow. Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005317 ! gastrula embryo (Drosophila) relationship: develops_from FBbt:00005311 ! stage 5 embryo (Drosophila) [Term] id: FBbt:00005319 name: stage 7 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' carrying the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying)." [FBC:DOS, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005317 ! gastrula embryo (Drosophila) relationship: develops_from FBbt:00005318 ! stage 6 embryo (Drosophila) [Term] id: FBbt:00005320 name: individualization stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A fully elongated spermatid, undergoing individualisation." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur synonym: "Individuation stage spermatid" EXACT [] synonym: "late spermatid" RELATED [] is_a: CL:0000018 ! spermatid relationship: develops_from FBbt:00005310 ! elongation stage spermatid (Drosophila) relationship: develops_from FBbt:00057002 ! late elongation-stage spermatid (Drosophila) [Term] id: FBbt:00005321 name: extended germ band embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 9-12." [FBC:DOS] subset: deprecated ! warning of impending obsoletion is_a: UBERON:0000922 ! embryo relationship: develops_from FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00005322 name: stage 8 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying)." [FBC:DOS, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005317 ! gastrula embryo (Drosophila) relationship: develops_from FBbt:00005319 ! stage 7 embryo (Drosophila) [Term] id: FBbt:00005323 name: stage 9 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 9 begins when mesodermal segmentation becomes (transiently) visible, and ends with the appearance of the stomodeal invagination slightly ventral to the anterior pole. Duration at 25 degrees C: approximately 40 minutes (220-260 minutes after egg laying)." [FBC:DOS, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00014201 ! early extended germ band embryo (Drosophila) relationship: develops_from FBbt:00005322 ! stage 8 embryo (Drosophila) [Term] id: FBbt:00005324 name: stage 10 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 10 begins with the appearance of the stomodeal invagination, slightly ventral to the anterior pole. Periodic furrows appear in the embryonic epidermis around the middle of the stage. The germ band continues to extend, reaching its maximum extent of 75% egg length towards the end of the stage. The end of the stage is marked by the beginning of invagination of the tracheal placodes. Duration at 25 degrees: approximately 60 minutes (260-320 minutes after egg laying)." [FBC:DOS, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00014201 ! early extended germ band embryo (Drosophila) relationship: develops_from FBbt:00005323 ! stage 9 embryo (Drosophila) [Term] id: FBbt:00005325 name: stage 11 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 11 begins with the invagination of the tracheal placodes. Para-segmental furrows form and segment boundary furrows become deep folds. Within the head, gnathal protuberances become apparent. The end of this stage is signalled by the appearance of a distinct cleft at the posterior pole of the embryo, which becomes detached from the vitelline membrane. This marks the beginning of germ band retraction. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying)." [FBC:DOS, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "Segmented germ band stage" RELATED [] is_a: FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: develops_from FBbt:00005324 ! stage 10 embryo (Drosophila) [Term] id: FBbt:00005326 name: stomodeal invagination (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0089570] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) [Term] id: FBbt:00005327 name: stage 12 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Germ band retraction. Stage 12 begins when germ-band retraction starts and ends when this process is complete so that the prospective anal plate occupies the posterior pole. During this stage the posterior and anterior hindgut primordia meet and fuse and the tracheal pits fuse to form the tracheal tree. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying)." [FBC:DOS, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: develops_from FBbt:00005325 ! stage 11 embryo (Drosophila) [Term] id: FBbt:00005328 name: stage 13 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 13 begins at the completion of germ-band retraction, when the prospective anal plate occupy the posterior pole. The dorsal ridge becomes apparent externally; the clypeolabrum retracts, leaving a triangular shaped gap at the anterior pole; the labium moves to the ventral midline. This stage ends when head involution begins. Duration at 25 degrees C:Approximately 60 minutes (560-620 minutes after egg laying)." [FBC:DOS, FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: develops_from FBbt:00005327 ! stage 12 embryo (Drosophila) [Term] id: FBbt:00005329 name: cultured cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) [Term] id: FBbt:00005330 name: stage 14 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 14 begins with the initiation of head involution. Closure of the midgut around the yolk and dorsal closure continue. Dorsal closure is 80% complete by the end of this stage. This stage ends with the appearance of the second midgut constriction. Duration at 25 degrees C: approximately 60 minutes (620-680 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: develops_from FBbt:00005328 ! stage 13 embryo (Drosophila) [Term] id: FBbt:00005331 name: dorsal closure embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 13-15." [FBC:DOS] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "contracted germ band embryo" RELATED [] synonym: "head involution embryo" RELATED [] is_a: UBERON:0000922 ! embryo relationship: develops_from FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: develops_from FBbt:00005321 ! extended germ band embryo (Drosophila) [Term] id: FBbt:00005332 name: stage 15 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 15 begins with the appearance of the second midgut constriction. During this stage the 1st and 3rd midgut constrictions form, dorsal closure is completed, and epidermal segmentation is accomplished. This stage ends when the intersegmental grooves can be distinguished at mid-dorsal level. Duration at 25 degrees C: approximately 100 minutes (680-780 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: develops_from FBbt:00005330 ! stage 14 embryo (Drosophila) [Term] id: FBbt:00005333 name: late embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 16 and 17." [FBC:DOS] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0000922 ! embryo relationship: develops_from FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005334 name: stage 16 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 16 begins when the intersegmental grooves can be distinguished at mid-dorsal level, and ends when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. During this stage the ventral nerve cord retracts to about 60% egg length. Duration at 25 degrees C: approximately 180 minutes (780-960 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005333 ! late embryo (Drosophila) relationship: develops_from FBbt:00005332 ! stage 15 embryo (Drosophila) [Term] id: FBbt:00005335 name: stage 17 embryo (Drosophila) namespace: fly_anatomy.ontology def: "Stage 17 begins when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. It lasts until hatching of the embryo (approximately 24 hours after egg laying), during which time much terminal differentiation occurs, the tracheal tree fills with air, so becoming completely visible, and the ventral nerve cord continues to retract. Duration at 25 degrees C: approximately 8 hours (960-1440 minutes after egg laying)." [FlyBase:FBrf0089570] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005333 ! late embryo (Drosophila) relationship: develops_from FBbt:00005334 ! stage 16 embryo (Drosophila) [Term] id: FBbt:00005336 name: hemocyte-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005329 ! cultured cell-line (Drosophila) [Term] id: FBbt:00005337 name: first instar larva (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "L1" RELATED [] is_a: UBERON:0002548 ! larva relationship: develops_from FBbt:00005333 ! late embryo (Drosophila) [Term] id: FBbt:00005338 name: second instar larva (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "L2" RELATED [] is_a: UBERON:0002548 ! larva relationship: develops_from FBbt:00005337 ! first instar larva (Drosophila) [Term] id: FBbt:00005339 name: third instar larva (Drosophila) namespace: fly_anatomy.ontology subset: deprecated ! warning of impending obsoletion synonym: "L3" RELATED [] is_a: UBERON:0002548 ! larva relationship: develops_from FBbt:00005338 ! second instar larva (Drosophila) [Term] id: FBbt:00005340 name: stage 1 third instar larva (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0036849] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "L3-1" RELATED [] is_a: FBbt:00005339 ! third instar larva (Drosophila) [Term] id: FBbt:00005341 name: stage 2 third instar larva (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: deprecated ! warning of impending obsoletion synonym: "L3-2" RELATED [] is_a: FBbt:00005339 ! third instar larva (Drosophila) relationship: develops_from FBbt:00005340 ! stage 1 third instar larva (Drosophila) [Term] id: FBbt:00005342 name: imaginal disc-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005329 ! cultured cell-line (Drosophila) [Term] id: FBbt:00005343 name: stage P1 prepupa (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "L3-2" RELATED [] is_a: UBERON:0003142 ! prepupa relationship: develops_from FBbt:00005339 ! third instar larva (Drosophila) relationship: develops_from FBbt:00005341 ! stage 2 third instar larva (Drosophila) [Term] id: FBbt:00005344 name: stage P2 prepupa (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0003142 ! prepupa relationship: develops_from FBbt:00005343 ! stage P1 prepupa (Drosophila) [Term] id: FBbt:00005345 name: stage P3 prepupa (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "bubble prepupa" RELATED [] synonym: "cryptocephalic pupa" RELATED [] is_a: UBERON:0003142 ! prepupa relationship: develops_from FBbt:00005344 ! stage P2 prepupa (Drosophila) [Term] id: FBbt:00005346 name: stage P4 prepupa (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0003142 ! prepupa relationship: develops_from FBbt:00005345 ! stage P3 prepupa (Drosophila) [Term] id: FBbt:00005347 name: stage P4(i) prepupa (Drosophila) namespace: fly_anatomy.ontology def: "Bouyant (approximately 6.5-12 hrs at 25'C). Prepupa floats on water (6.5-7 hours). Other events: lateral trachea become obscured (6.5-8 hours); everted wing and legs discs visible (translucent); bubble appears in posterior of puparium, displacing prepupa anteriorly." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted in the near future. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005346 ! stage P4 prepupa (Drosophila) [Term] id: FBbt:00005348 name: stage P4(ii) prepupa (Drosophila) namespace: fly_anatomy.ontology def: "Moving bubble/pupation (12-13.5 hours): Bubble within abdomen disappears; posterior bubble gradually displaced to anterior of puparium, while the (pre?)pupa withdraws to posterior end; imaginal head sac everted and mouthparts of larva expelled." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005346 ! stage P4 prepupa (Drosophila) relationship: develops_from FBbt:00005347 ! stage P4(i) prepupa (Drosophila) [Term] id: FBbt:00005349 name: Kc167 cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005336 ! hemocyte-derived cell-line (Drosophila) is_a: FBbt:00005369 ! embryo-derived cell-line (Drosophila) [Term] id: FBbt:00005350 name: stage P5 pupa (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0003143 ! pupa relationship: develops_from FBbt:00005346 ! stage P4 prepupa (Drosophila) [Term] id: FBbt:00005351 name: stage P5(i) pupa (Drosophila) namespace: fly_anatomy.ontology def: "Malpighian tubules migrating - enlarged initial segments of anterior pair of Malpighian tubules move from thorax to abdomen. Translucent patch lacking adhering fat body cells becomes apparent in the middle of the eye region." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005350 ! stage P5 pupa (Drosophila) relationship: develops_from FBbt:00005348 ! stage P4(ii) prepupa (Drosophila) [Term] id: FBbt:00005352 name: stage P5(ii) pupa (Drosophila) namespace: fly_anatomy.ontology def: "Malpighian tubules become prominent and green." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: FBbt:00005350 ! stage P5 pupa (Drosophila) relationship: develops_from FBbt:00005351 ! stage P5(i) pupa (Drosophila) [Term] id: FBbt:00005353 name: stage P6 pupa (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0003143 ! pupa relationship: develops_from FBbt:00005350 ! stage P5 pupa (Drosophila) relationship: develops_from FBbt:00005352 ! stage P5(ii) pupa (Drosophila) [Term] id: FBbt:00005354 name: stage P7 pupa (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion is_a: UBERON:0003143 ! pupa relationship: develops_from FBbt:00005353 ! stage P6 pupa (Drosophila) [Term] id: FBbt:00005355 name: stage P8 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P8 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005354 ! stage P7 pupa (Drosophila) [Term] id: FBbt:00005356 name: stage P9 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P9 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005355 ! stage P8 pharate adult (Drosophila) [Term] id: FBbt:00005357 name: stage P10 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P10 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005356 ! stage P9 pharate adult (Drosophila) [Term] id: FBbt:00005358 name: stage P11 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P11 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005357 ! stage P10 pharate adult (Drosophila) [Term] id: FBbt:00005359 name: stage P11(i) pharate adult (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal thoracic micro- and macrochaetae become visible." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P11(i) pupa" RELATED [] is_a: FBbt:00005358 ! stage P11 pharate adult (Drosophila) [Term] id: FBbt:00005360 name: stage P11(ii) pharate adult (Drosophila) namespace: fly_anatomy.ontology def: "Tips of folded wings become gray." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P11(ii) pupa" RELATED [] is_a: FBbt:00005358 ! stage P11 pharate adult (Drosophila) relationship: develops_from FBbt:00005359 ! stage P11(i) pharate adult (Drosophila) [Term] id: FBbt:00005361 name: stage P12 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P12 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005358 ! stage P11 pharate adult (Drosophila) [Term] id: FBbt:00005362 name: stage P12(i) pharate adult (Drosophila) namespace: fly_anatomy.ontology def: "Bristles on abdominal tergites become visible; wings become gray (approximately 73-78 hours at 25'C)." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P12(i) pupa" RELATED [] is_a: FBbt:00005361 ! stage P12 pharate adult (Drosophila) relationship: develops_from FBbt:00005360 ! stage P11(ii) pharate adult (Drosophila) [Term] id: FBbt:00005363 name: stage P12(ii) pharate adult (Drosophila) namespace: fly_anatomy.ontology def: "Sex comb darkens." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P12(ii) pupa" RELATED [] is_a: FBbt:00005361 ! stage P12 pharate adult (Drosophila) relationship: develops_from FBbt:00005362 ! stage P12(i) pharate adult (Drosophila) [Term] id: FBbt:00005364 name: stage P13 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P13 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005363 ! stage P12(ii) pharate adult (Drosophila) [Term] id: FBbt:00005365 name: stage P14 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P14 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005364 ! stage P13 pharate adult (Drosophila) [Term] id: FBbt:00005366 name: stage P15 pharate adult (Drosophila) namespace: fly_anatomy.ontology comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage 0 adult" RELATED [] synonym: "stage P15 pupa" RELATED [] is_a: FBbt:00006011 ! pharate adult (Drosophila) relationship: develops_from FBbt:00005365 ! stage P14 pharate adult (Drosophila) [Term] id: FBbt:00005367 name: stage P15(i) pharate adult (Drosophila) namespace: fly_anatomy.ontology def: "This is the stage immediately prior to emergence. It is characterized by the black appearance of the wings, frequent movements of the legs and the presence of the meconium, a pale green patch which appears at the posterior tip of the abdomen. Wings at this stage closely resemble those 87hr after pupariation as described by Tucker et al., (1986). The cuticle is highly folded, and numerous epidermal cell processes containing transalar microtubule arrays span the lumen. Malpighian tubules and yellow body become obscured by tanning of the tergite. Legs twitch (flies can walk if dissected from puparium)." [FlyBase:FBrf0036849, FlyBase:FBrf0044294, FlyBase:FBrf0047373, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P15(i) pupa" RELATED [] is_a: FBbt:00005366 ! stage P15 pharate adult (Drosophila) [Term] id: FBbt:00005368 name: stage P15(ii) pharate adult (Drosophila) namespace: fly_anatomy.ontology def: "Eclosion." [FlyBase:FBrf0036849, FlyBase:FBrf0049147] comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. subset: deprecated ! warning of impending obsoletion synonym: "stage P15(ii) pupa" RELATED [] is_a: FBbt:00005366 ! stage P15 pharate adult (Drosophila) relationship: develops_from FBbt:00005367 ! stage P15(i) pharate adult (Drosophila) [Term] id: FBbt:00005369 name: embryo-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005329 ! cultured cell-line (Drosophila) [Term] id: FBbt:00005370 name: stage A1 adult (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005373 comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. synonym: "stage I adult" RELATED [] is_a: UBERON:0007023 ! adult organism relationship: develops_from FBbt:00005366 ! stage P15 pharate adult (Drosophila) relationship: develops_from FBbt:00005368 ! stage P15(ii) pharate adult (Drosophila) [Term] id: FBbt:00005371 name: stage A2 adult (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005374 comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. synonym: "stage II adult" RELATED [] is_a: UBERON:0007023 ! adult organism relationship: develops_from FBbt:00005370 ! stage A1 adult (Drosophila) [Term] id: FBbt:00005372 name: stage 0 adult namespace: fly_anatomy.ontology def: "The stage immediately prior to emergence. This stage (P15i, Bainbridge and Bownes, 1981) is characterized by the black appearance of the wings, frequent movements of the legs and the presence of the meconium, a pale green patch which appears at the posterior tip of the abdomen. Wings at this stage closely resemble those 87hr after pupariation as described by Tucker et al., (1986). The cuticle is highly folded, and numerous epidermal cell processes containing transalar microtubule arrays span the lumen." [FlyBase:FBrf0047373] is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005376 name: yolk sac (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00000054 ! cleavage stage embryo (Drosophila) [Term] id: FBbt:00005377 name: antennal segment 2 sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some second segment of antenna (FBbt:00004514)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007151 ! adult antennal sense organ (Drosophila) relationship: part_of FBbt:00004514 ! second segment of antenna (Drosophila) [Term] id: FBbt:00005378 name: wing margin (Drosophila) namespace: fly_anatomy.ontology def: "The border or edge of the wing." [FBC:gg] subset: cur ! cur synonym: "margin" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00005385 name: ostia (Drosophila) namespace: fly_anatomy.ontology def: "A small opening in the heart." [FBC:gg] subset: cur ! cur is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001009 ! circulatory system [Term] id: FBbt:00005387 name: embryonic nervous system of thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00005388 name: embryonic nervous system of abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007332 ! tagmatic subdivision of organ system (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) relationship: part_of FBbt:00001055 ! presumptive embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00005389 name: pupal tagma (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000002 ! tagma (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00005390 name: pupal thorax (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000015 ! thorax (Drosophila) is_a: FBbt:00005389 ! pupal tagma (Drosophila) [Term] id: FBbt:00005391 name: pupal abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00000020 ! abdomen (Drosophila) is_a: FBbt:00005389 ! pupal tagma (Drosophila) [Term] id: FBbt:00005392 name: presumptive embryonic/larval integumentary system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval integumentary system." [FBC:DOS] subset: cur ! cur synonym: "embryonic integumentary system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00005393 name: embryonic/larval integumentary system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval integumentary system" EXACT [] is_a: UBERON:0002416 ! integumental system relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00005394 name: prepupal integumentary system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0002416 ! integumental system relationship: part_of UBERON:0003142 ! prepupa [Term] id: FBbt:00005395 name: pupal integumentary system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0002416 ! integumental system relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00005396 name: adult integumentary system (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004474 subset: cur ! cur synonym: "adult external" RELATED [] synonym: "adult integument" EXACT [] is_a: UBERON:0002416 ! integumental system relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00005397 name: embryonic epidermis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007376 ! outer epithelial layer relationship: part_of FBbt:00005392 ! presumptive embryonic/larval integumentary system (Drosophila) [Term] id: FBbt:00005398 name: embryonic/larval epidermis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval epidermis" EXACT [] is_a: UBERON:0007376 ! outer epithelial layer relationship: develops_from FBbt:00005397 ! embryonic epidermis (Drosophila) relationship: part_of FBbt:00005393 ! embryonic/larval integumentary system (Drosophila) [Term] id: FBbt:00005399 name: prepupal epidermis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007376 ! outer epithelial layer relationship: part_of FBbt:00005394 ! prepupal integumentary system (Drosophila) [Term] id: FBbt:00005400 name: pupal epidermis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007376 ! outer epithelial layer relationship: part_of FBbt:00005395 ! pupal integumentary system (Drosophila) [Term] id: FBbt:00005401 name: adult epidermis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007376 ! outer epithelial layer relationship: develops_from UBERON:0000939 ! imaginal disc relationship: part_of FBbt:00005396 ! adult integumentary system (Drosophila) [Term] id: FBbt:00005402 name: oocyte associated follicle cell (Drosophila) namespace: fly_anatomy.ontology def: "Any follicle cell (FBbt:00004904) that is part of some oocyte associated follicular epithelium (FBbt:00007030)." [FBC:auto_generated_definition] subset: RD ! terms for rd test ontology subset: cur ! cur synonym: "MBFC" EXACT [FlyBase:FBrf0135734] synonym: "columnar follicle cell" RELATED [] synonym: "main body follicle cell" EXACT [FlyBase:FBrf0135734] is_a: CL:0000477 ! follicle cell relationship: part_of FBbt:00007030 ! oocyte associated follicular epithelium (Drosophila) [Term] id: FBbt:00005403 name: stem cell fusome (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004862 ! fusome (Drosophila) [Term] id: FBbt:00005404 name: elongated stem cell fusome (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005403 ! stem cell fusome (Drosophila) [Term] id: FBbt:00005405 name: round stem cell fusome (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005403 ! stem cell fusome (Drosophila) [Term] id: FBbt:00005406 name: ovarian sheath cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0004911 ! epithelium of female gonad [Term] id: FBbt:00005407 name: mushroom body vertical lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003689 def: "Bundle of Kenyon cell projections that arises from the anterior end of the pedunculus and projects dorsally." [FBC:BrainName, VFB_vol:00005407] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "dorsal lobe" RELATED [] synonym: "dorsal lobe of mushroom body" EXACT [] synonym: "vertical branch of mushroom body" EXACT [] synonym: "vertical lobe of mushroom body" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003688 ! lobe system of mushroom body (Drosophila) [Term] id: FBbt:00005408 name: mushroom body medial lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003692 def: "Bundle of Kenyon cell projections that arises from the anterior end of the pedunculus and projects medially." [FBC:BrainName, VFB_vol:00005408] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "horizontal lobe of mushroom body" EXACT [] synonym: "medial branch of mushroom body" EXACT [] synonym: "medial lobe" RELATED [] synonym: "medial lobe of mushroom body" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003688 ! lobe system of mushroom body (Drosophila) [Term] id: FBbt:00005409 name: ring canal (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0000991 ! gonad [Term] id: FBbt:00005410 name: spermatocyte cell spectrosome (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00005411 ! spectrosome (Drosophila) relationship: part_of CL:0000018 ! spermatid [Term] id: FBbt:00005411 name: spectrosome (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0000991 ! gonad [Term] id: FBbt:00005413 name: anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology def: "\"anlagen in statu nascendi\" are domains that do not yet coincide 1:1 with a later organ. Anlagen in statu nascendi are typically defined for the early blastoderm by the expression domains of genes which, in the late blastoderm or later, are expressed in specific anlagen, but initially come on in larger domains." [FlyBase:FBrf0178740] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A0" RELATED [] is_a: UBERON:0002050 ! embryonic structure [Term] id: FBbt:00005414 name: ectoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005427 ! ectoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur [Term] id: FBbt:00005415 name: central brain anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A0ProcEC" RELATED [] synonym: "Asn CenBr" RELATED [FBC:ds555] synonym: "procephalic ectoderm anlage in statu nascendi" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:01000119 ! anterior ectoderm anlage (Drosophila) [Term] id: FBbt:00005416 name: ventral ectoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00004204 ! ventral ectoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur synonym: "A0venEC" RELATED [] [Term] id: FBbt:00005417 name: endoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005435 ! endoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur [Term] id: FBbt:00005418 name: anterior endoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000210 ! anterior endoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur synonym: "A0antEndo" RELATED [] [Term] id: FBbt:00005419 name: posterior endoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000447 ! posterior endoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur synonym: "A0postEndo" RELATED [] [Term] id: FBbt:00005420 name: mesoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000104 ! mesoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur [Term] id: FBbt:00005421 name: head mesoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "A0HeadMes" RELATED [] [Term] id: FBbt:00005422 name: amnioserosa anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "A0amnioser" RELATED [] is_a: FBbt:00005413 ! anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00005311 ! stage 5 embryo (Drosophila) [Term] id: FBbt:00005423 name: foregut anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A0FoG" RELATED [] synonym: "Asn FoG" RELATED [FBC:ds555] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:01000119 ! anterior ectoderm anlage (Drosophila) [Term] id: FBbt:00005424 name: hindgut anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "A0HiGP" RELATED [] is_a: FBbt:00005413 ! anlage in statu nascendi (Drosophila) [Term] id: FBbt:00005425 name: visual anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A0Vis" RELATED [] synonym: "Asn VisSys" RELATED [FBC:ds555] is_a: FBbt:00005413 ! anlage in statu nascendi (Drosophila) relationship: part_of FBbt:01000119 ! anterior ectoderm anlage (Drosophila) [Term] id: FBbt:00005427 name: ectoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0007688 ! anlage [Term] id: FBbt:00005428 name: dorsal ectoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005427 ! ectoderm anlage (Drosophila) [Term] id: FBbt:00005429 name: furrow canal (Drosophila) namespace: fly_anatomy.ontology def: "Stable infoldings of plasma membrane, rich in the cytoskeletal proteins F-actin and myosin II, present at the leading edge of membrane invagination during cellularization." [FlyBase:FBrf0022470, FlyBase:FBrf0129926] comment: Warning - FBbt:00005429 was previously an ID for 'procephalic ectoderm anlage'. This is one of a couple of IDs automatically re-used by obo-edit because obsoletes were mistakenly deleted. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00005311 ! stage 5 embryo (Drosophila) [Term] id: FBbt:00005431 name: foregut anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "AFoG" RELATED [] is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005423 ! foregut anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00000119 ! anterior ectoderm (Drosophila) [Term] id: FBbt:00005432 name: salivary gland duct anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A SalD" RELATED [FBC:ds555] synonym: "ASalD" RELATED [] is_a: FBbt:00025993 ! ventral ectoderm derivative (Drosophila) is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005558 ! ventral ectoderm (Drosophila) [Term] id: FBbt:00005433 name: tracheal anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "ATrach" RELATED [] [Term] id: FBbt:00005434 name: visual anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A VisSys" RELATED [FBC:ds555] synonym: "AVis" RELATED [] is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005425 ! visual anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00000119 ! anterior ectoderm (Drosophila) [Term] id: FBbt:00005435 name: endoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005311 ! stage 5 embryo (Drosophila) [Term] id: FBbt:00005436 name: trunk mesoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn/A TrMes" RELATED [FBC:ds555] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00000104 ! mesoderm anlage (Drosophila) [Term] id: FBbt:00005437 name: specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "SA" RELATED [] [Term] id: FBbt:00005438 name: foregut specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005439 name: clypeo-labral anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A Cly" RELATED [FBC:ds555] synonym: "clypeo-labral specific anlage" RELATED [] is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00000094 ! clypeo-labral anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00000119 ! anterior ectoderm (Drosophila) [Term] id: FBbt:00005440 name: epipharynx specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005441 name: labral sensory complex specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005442 name: hypopharynx anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A HyPh" RELATED [FBC:ds555] synonym: "hypopharynx specific anlage" RELATED [] is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00016000 ! hypopharynx anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00005431 ! foregut anlage (Drosophila) [Term] id: FBbt:00005443 name: esophagus specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005444 name: maxillary organ specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005445 name: labial complex specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005446 name: salivary gland specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005447 name: salivary gland body specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005448 name: salivary gland duct specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005449 name: adult salivary gland specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005450 name: midgut specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005451 name: cuprophilic cell primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 MiCupro" RELATED [FBC:ds555] synonym: "embryonic cuprophilic cell specific anlage" RELATED [] is_a: FBbt:00005624 ! embryonic/larval midgut primordium (Drosophila) is_a: FBbt:00025995 ! posterior endoderm derivative (Drosophila) relationship: develops_from FBbt:10005329 ! posterior midgut primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00005452 name: midgut interstitial cell primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium of the midgut interstitial cells. This becomes distinct from the posterior midgut inclusive primordium during stage 11, when its cells delaminate from the tip of the posterior midgut primordium and move postero-ventrally to form a ventral plate of basophilic cells (interstitial cell precursors) wedged between the extending lobes of the posterior midgut primordium. This primordium disappears when its cells intercalate back into the midgut epithelium towards the end of stage 14." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 MiInter" RELATED [FBC:ds555] synonym: "embryonic midgut interstitial cell specific anlage" RELATED [] is_a: FBbt:00005624 ! embryonic/larval midgut primordium (Drosophila) is_a: FBbt:00025995 ! posterior endoderm derivative (Drosophila) relationship: develops_from FBbt:10005329 ! posterior midgut primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00005454 name: hindgut specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005455 name: Malpighian tubule specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005456 name: main segment of Malpighian tubule primordium namespace: fly_anatomy.ontology def: "." [FBC:DOS] is_obsolete: true comment: Not in Volker's schema, but term is used by Berkeley. It's position in the hierarchy may be questionable. subset: cur ! cur synonym: "main segment of Malpighian tubule specific anlage" RELATED [] [Term] id: FBbt:00005457 name: small intestine specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005458 name: large intestine specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005459 name: rectum specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005460 name: adult hindgut specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005461 name: circulatory system primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "embryonic/larval circulatory system specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005462 name: garland cell primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "garland cell specific anlage" RELATED [] is_a: FBbt:00025999 ! head mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000127 ! head mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005463 name: crystal cell specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005464 name: lamellocyte specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005465 name: macrophage specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005466 name: pericardial cell primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "pericardial cell specific anlage" RELATED [] is_a: FBbt:00005461 ! circulatory system primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005541 ! cardiogenic mesoderm (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005467 name: lymph gland primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur synonym: "lymph gland specific anlage" RELATED [] is_a: FBbt:00005461 ! circulatory system primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005541 ! cardiogenic mesoderm (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005468 name: mesodermal specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005469 name: muscle system specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005470 name: somatic muscle specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005472 name: gonad specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005473 name: gonadal sheath proper primordium (Drosophila) namespace: fly_anatomy.ontology def: "The primordium of the gonadal sheath. This arises from clusters of cells in parasegments 10, 11 and 12 of the dorsal branch of the fat body/gonad primordium which split off during stage 14 and then cluster around the germ cells." [FlyBase:FBrf0092473] subset: cur ! cur synonym: "SGP" EXACT [FlyBase:FBrf0092473] synonym: "gonadal mesoderm" RELATED [] synonym: "gonadal sheath specific anlage" RELATED [FBC:VH] synonym: "somatic gonadal precursor" EXACT [FlyBase:FBrf0092473] is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005520 ! fat body/gonad primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005474 name: dorsal epidermis specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005475 name: embryonic leading edge cell primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A EdCe" RELATED [FBC:ds555] synonym: "embryonic leading edge cell specific anlage" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00005526 ! dorsal epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005476 name: dorsal apodeme specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005477 name: oenocyte specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005478 name: imaginal precursor specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005479 name: abdominal histoblast specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005480 name: sensory nervous system specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005481 name: ventral epidermal specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005482 name: anal pad specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005483 name: ventral apodeme specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005484 name: ventral sensory complex specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005485 name: tracheal system specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005486 name: spiracle specific anlage namespace: fly_anatomy.ontology is_obsolete: true replaced_by: FBbt:10005248 ! spiracle primordium (Drosophila) subset: cur ! cur synonym: "spiracle primordium" RELATED [] [Term] id: FBbt:00005487 name: anterior spiracle specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005488 name: posterior spiracle specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005489 name: dorsal trunk specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005490 name: primary segmental branch specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005491 name: visceral branch specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005492 name: secondary branch specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005493 name: tracheole specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005494 name: adult tracheal precursor primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A AdTra" RELATED [FBC:ds555] synonym: "adult tracheal precursor specific anlage" RELATED [] is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) relationship: develops_from FBbt:00005037 ! tracheal primordium (Drosophila) [Term] id: FBbt:00005496 name: sessile hemocyte (Drosophila) namespace: fly_anatomy.ontology def: "A hemocyte that is not freely circulating, but is attached to the inner surface of the integument." [FlyBase:FBrf0134542] subset: cur ! cur is_a: FBbt:00001684 ! embryonic/larval hemocyte (Drosophila) [Term] id: FBbt:00005497 name: prothoracic gland primordium (Drosophila) namespace: fly_anatomy.ontology def: "The primordium that will form the embryonic/larval prothoracic gland, a substructure of the embryonic/larval ring gland. It originates in the dorsal ectoderm of T1, from which it segregates during stage 15 to form bilateral clusters near the heart precursors. In late embryogenesis, it partially fuses with the corpus allatum." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00017009 ! ring gland primordium (Drosophila) relationship: develops_from FBbt:00005553 ! dorsal sensory complex primordium (Drosophila) [Term] id: FBbt:00005498 name: dorsal pharyngeal muscle primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 ParMus" RELATED [FBC:ds555] is_a: FBbt:00025999 ! head mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000127 ! head mesoderm (Drosophila) relationship: develops_from FBbt:00007048 ! dorsal pharyngeal muscle anlage (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005499 name: hindgut visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "hindgut visceral mesoderm primordium" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00017008 ! longitudinal visceral muscle primordium (Drosophila) [Term] id: FBbt:00005500 name: foregut visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "foregut visceral mesoderm primordium" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00017008 ! longitudinal visceral muscle primordium (Drosophila) [Term] id: FBbt:00005501 name: Malpighian tubule main body primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 MalTB" RELATED [FBC:ds555] is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000442 ! Malpighian tubule primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005502 name: Malpighian tubule tip cell primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Malpighian tubule tip cell specific anlage" RELATED [] synonym: "P1 MalTT" RELATED [FBC:ds555] is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000442 ! Malpighian tubule primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005503 name: hypopharynx inclusive primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 HyPh" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005442 ! hypopharynx anlage (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00005504 name: small intestine primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 SmInt" RELATED [FBC:ds555] synonym: "small intestine specific anlage" RELATED [] is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000441 ! hindgut proper primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005505 name: large intestine primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 LaInt" RELATED [FBC:ds555] synonym: "large intestine specific anlage" RELATED [] is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000441 ! hindgut proper primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005506 name: rectum primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 Rect" RELATED [FBC:ds555] synonym: "rectum specific anlage" RELATED [] is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000441 ! hindgut proper primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005507 name: esophagus primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A/P2 Eso" NARROW [FBC:ds555] synonym: "P1 Eso" RELATED [FBC:ds555] synonym: "esophagus specific anlage" RELATED [] synonym: "oesophagus primordium" EXACT [] is_a: FBbt:00005535 ! foregut primordium (Drosophila) is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) relationship: develops_from FBbt:00018001 ! esophagus anlage (Drosophila) relationship: part_of FBbt:00000120 ! early stomodeal invagination (Drosophila) relationship: part_of FBbt:00005252 ! stomodeal invagination late (Drosophila) relationship: part_of UBERON:0000930 ! stomodeum [Term] id: FBbt:00005508 name: mushroom body primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005666 def: "Embryonic structure from which the mushroom body is derived. The development of the mushroom body proceeds as follows: axonogenesis of embryonic Kenyon cells starts late in embryonic stage 14. The axons from these cells extend towards the lateral protocerebral tract (LTP). During stage 16, a second set of Kenyon cell fibers form a second tract, closely apposed to the first. By late stage 16, both tracts extend anteriorly beyond the LTP to form the distal part of the peduncle. These tracts make a sharp medial turn close to the boundary with the deuterocerebrum to form the medial lobe. By late stage 17 the vertical lobe has emerged as a collateral outgrowth from the point where these tracts bend. Finally, the calyx forms near to the end of embryogenesis." [FlyBase:FBrf0144836] subset: cur ! cur synonym: "embryonic central brain mushroom body" EXACT [] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00005542 ! central brain primordium (Drosophila) relationship: part_of FBbt:00005662 ! embryonic central brain (Drosophila) [Term] id: FBbt:00005509 name: embryonic dorsal pouch primordium (Drosophila) namespace: fly_anatomy.ontology comment: Editing Flag: This probably needs fixing. There seem to be two different things referred to as a dorsal pouch. One is a transitional structure formed during development of the head, and the other is an unrelated larval structure. Need to disambiguate/disentangle. Note - possible redundancy between primordium term and embryonic term. ds060616. subset: cur ! cur is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005510 name: antennal primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "AntP1" RELATED [] synonym: "AntP2" RELATED [] synonym: "P3 AntOrg" RELATED [FBC:ds555] synonym: "antennal primordium1" NARROW [] synonym: "antennal primordium2" NARROW [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00015253 ! antennal anlage (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) [Term] id: FBbt:00005511 name: pars intercerebralis primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00005542 ! central brain primordium (Drosophila) [Term] id: FBbt:00005512 name: salivary gland body primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005621 def: "Primordium that will form the secretory body of the embryonic/larval salivary gland. This primordium is first apparent as two epidermal placodes on the medial surface of the labial buds during stage 11. These placodes invaginate during embryonic stage 11 to form simple tubes on each side of the embryo that are positioned approximately along the dorso-ventral axis. Once internalized, the primordia migrate posteriorly during embryonic stage 12. They fuse to the developing salivary gland common duct by stage 13 and shortly after begin to show signs of secretory activity." [FlyBase:FBrf0089570, FlyBase:FBrf0126988, FlyBase:FBrf0159337] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 SalG" EXACT [FBC:ds555] synonym: "embryonic salivary gland" RELATED [] synonym: "salivary gland body specific anlage" RELATED [] is_a: FBbt:00025993 ! ventral ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005558 ! ventral ectoderm (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005620 ! presumptive embryonic salivary gland (Drosophila) [Term] id: FBbt:00005513 name: adult hindgut primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 AdHi" RELATED [FBC:ds555] synonym: "adult hindgut specific anlage" RELATED [] is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) is_a: FBbt:00025992 ! posterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000441 ! hindgut proper primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005514 name: adult clypeo-labral primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A AdCly" RELATED [FBC:ds555] is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00004203 ! adult clypeo-labral anlage (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) [Term] id: FBbt:00005515 name: adult eye primordium early (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: FBbt:10005249 ! adult eye primordium (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00001059 ! visual primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005516 name: adult muscle precursor primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005471 subset: cur ! cur synonym: "adult muscle precursor specific anlage" RELATED [] is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) is_a: FBbt:00026000 ! trunk mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000128 ! trunk mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005517 name: leg disc-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005342 ! imaginal disc-derived cell-line (Drosophila) [Term] id: FBbt:00005518 name: somatic muscle primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium of the embryonic/larval somatic musculature of the trunk. It arises from the outer layer of the trunk mesoderm. During germ band shortening (stage 13), it segregates into loose segmental clusters. Within these clusters, muscle formation proceeds by fusion of fusion competent myoblasts to muscle founder cells." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 SoMus" RELATED [FBC:ds555] synonym: "SoMusP2" RELATED [] synonym: "somatic muscle specific anlage" RELATED [] is_a: FBbt:00006001 ! somatic mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000129 ! somatic mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005519 name: visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ViMusP2" RELATED [] is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000130 ! visceral mesoderm (Drosophila) [Term] id: FBbt:00005520 name: fat body/gonad primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium which develops into the fat body and gonadal sheath. The first morphological sign of its development comes during stage 11, when the outer of the two layers of the trunk mesoderm thickens medially to become 2-3 cells thick. Segmentally arranged groups of cells split off from inner most layer of this thickening, becoming sandwiched between the somatic muscle primordium and the circular visceral muscle primordium. By stage 13, these segmental clusters have fused into continuous columns on either side of the embryo. These bands split into dorsal and ventral subdivisions. A sub-population of cells in the dorsal subdivision in parasegments 10-12 split off to form the gonadal sheath primordium during stage 14-15." [FlyBase:FBrf0089570, FlyBase:FBrf0092473] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "FaB/GP2" RELATED [] synonym: "P2 FaB/GP" RELATED [FBC:ds555] synonym: "gonadal mesoderm" NARROW [] is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000130 ! visceral mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00005523 name: inclusive hindgut primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "iHiGP2" RELATED [FBC:ds555] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00004202 ! hindgut anlage (Drosophila) relationship: part_of FBbt:00000122 ! posterior ectoderm (Drosophila) relationship: part_of FBbt:00000123 ! amnioproctodeal invagination (Drosophila) [Term] id: FBbt:00005526 name: dorsal epidermis primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "dorEpiP2" RELATED [] synonym: "dorsal epidermis specific anlage" RELATED [] is_a: FBbt:00007046 ! dorsal ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00000112 ! dorsal ectoderm (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00005527 name: dorsal ectodermal primordium namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000112 ! dorsal ectoderm (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur synonym: "dorEcP2" RELATED [] [Term] id: FBbt:00005528 name: midline primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00025997 ! mesectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0000927 ! mesectoderm [Term] id: FBbt:00005529 name: mesectoderm primordium namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000136 ! mesectoderm comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur synonym: "MesEcP2" RELATED [] [Term] id: FBbt:00005530 name: external foregut primordium namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "eFoGP2" RELATED [] [Term] id: FBbt:00005531 name: salivary gland duct primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 SalD" RELATED [FBC:ds555] synonym: "SalDP2" RELATED [] synonym: "salivary gland duct specific anlage" BROAD [] is_a: FBbt:00025993 ! ventral ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005432 ! salivary gland duct anlage (Drosophila) relationship: part_of FBbt:00005620 ! presumptive embryonic salivary gland (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00005532 name: ventral ectoderm primordium namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005558 ! ventral ectoderm (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "venEcP2" RELATED [] synonym: "ventral ectoderm primordium P2" RELATED [] [Term] id: FBbt:00005533 name: ventral epidermis primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 iVenEp" RELATED [FBC:ds555] synonym: "venEpiP2" RELATED [] is_a: FBbt:00025993 ! ventral ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0002346 ! neurectoderm relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00005534 name: gnathal primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "GnaP2" RELATED [] is_a: FBbt:00007046 ! dorsal ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00000112 ! dorsal ectoderm (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00005535 name: foregut primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "FoGP2" RELATED [] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005536 name: stomatogastric nervous system primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 SNS" RELATED [FBC:ds555] synonym: "SnsP2" RELATED [] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00018002 ! stomatogastric nervous system anlage (Drosophila) relationship: part_of FBbt:00000120 ! early stomodeal invagination (Drosophila) [Term] id: FBbt:00005537 name: wing disc-derived cell-line (Drosophila) namespace: fly_anatomy.ontology comment: Warning - FBbt:00005537 was previously an ID for 'procephalic ectoderm anlage'. This is one of a couple of IDs automatically re-used by obo-edit because obsoletes were mistakenly deleted. subset: cur ! cur is_a: FBbt:00005342 ! imaginal disc-derived cell-line (Drosophila) [Term] id: FBbt:00005538 name: clypeo-labral primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ClyP2" RELATED [] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005439 ! clypeo-labral anlage (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00005539 name: head mesoderm primordium namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000127 ! head mesoderm (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "HeadMesP2" RELATED [] synonym: "head mesoderm P2 primordium" RELATED [] [Term] id: FBbt:00005540 name: trunk mesoderm primordium namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000128 ! trunk mesoderm (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "TrMesP2" RELATED [] synonym: "trunk mesoderm primordium P2" RELATED [] [Term] id: FBbt:00005541 name: cardiogenic mesoderm (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005561 subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "CardMes" EXACT [] synonym: "CardMesP2" EXACT [] synonym: "P2 CardMes" EXACT [FBC:ds555] synonym: "cardiac mesoderm" EXACT [] synonym: "cardiac mesoderm primordium" RELATED [] is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000130 ! visceral mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00005542 name: central brain primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 Cen Br" NARROW [FBC:ds555] synonym: "P3 CenBr" NARROW [FBC:ds555] synonym: "ProcEcP2" RELATED [] synonym: "procephalic ectoderm primordium" RELATED [] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00015256 ! central brain anlage (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005543 name: haploid cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005329 ! cultured cell-line (Drosophila) [Term] id: FBbt:00005544 name: maxillary sensory complex primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005551 ! sensory nervous system primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005534 ! gnathal primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005545 name: labial sensory complex primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005551 ! sensory nervous system primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005534 ! gnathal primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005546 name: labral sensory complex primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P3 LrSens" RELATED [FBC:ds555] is_a: FBbt:00005551 ! sensory nervous system primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005538 ! clypeo-labral primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005547 name: head epidermis primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "HeadEpiP3" RELATED [] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005548 name: head mesoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn/A TrMes" RELATED [FBC:ds555] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00000104 ! mesoderm anlage (Drosophila) [Term] id: FBbt:00005549 name: protocerebrum primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "ProtP3" RELATED [] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00005542 ! central brain primordium (Drosophila) [Term] id: FBbt:00005550 name: proventriculus primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "PvP3" RELATED [] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005551 name: sensory nervous system primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "sensory nervous system specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005552 name: ventral sensory complex primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P3 VenSens" RELATED [FBC:ds555] synonym: "ventral sensory complex specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00007047 ! ventral sensory complex anlage (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005553 name: dorsal sensory complex primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A/P4 DorSens" RELATED [FBC:ds555] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005526 ! dorsal epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00005554 name: ventral nerve cord primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000115 alt_id: FBbt:00005430 def: "Primordium which is formed by the delamination of neuroblasts from the ventral neurogenic region. The first of five waves of delamination starts towards the end of embryonic stage 8. During stage 11, the mesectoderm loses contact with the outer surface and forms neuronal and glial precursors in the midline of this primordium." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "AvenNeur" RELATED [] synonym: "P3 venNeur" RELATED [FBC:ds555] synonym: "venNeurP3" RELATED [] synonym: "ventral neurectoderm" RELATED [] synonym: "ventral neuroderm primordium" RELATED [] synonym: "ventral neuroectoderm" RELATED [] is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0002346 ! neurectoderm relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) [Term] id: FBbt:00005555 name: repressed primordium (Drosophila) namespace: fly_anatomy.ontology def: "Repressed primordium of the genital disc corresponding to that of the opposite sex (Epper and Nothiger, 1982)." [FlyBase:FBrf0037847, FlyBase:FBrf0064788] subset: cur ! cur is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005556 name: apoptotic amnioserosa (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from FBbt:00000095 ! amnioserosa (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005557 name: procephalic ectoderm namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "ProcEc" RELATED [] [Term] id: FBbt:00005558 name: ventral ectoderm (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0089570] comment: Merge with ventral neurogenic region? subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 VenEc" RELATED [FBC:ds555] synonym: "venEc" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00007045 ! trunk ectoderm (Drosophila) [Term] id: FBbt:00005559 name: anterior endoderm (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005521 alt_id: FBbt:00005524 def: "The anterior part of the endoderm from its invagination during stage 7 to the epithelial-to-mesenchymal transition in late stage 8 when it become anterior midgut primordium. The invaginating anterior endoderm makes a short furrow that forms the cross bar of a T whose stem is the ventral furrow. After invagination, the cells divide once before the mesenchymal to epithelial transition." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "antEndo" EXACT [] synonym: "antEndoP2" RELATED [] synonym: "antMGRudP2" RELATED [] synonym: "anterior endoderm primordium" RELATED [] synonym: "anterior midgut rudiment" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00000210 ! anterior endoderm anlage (Drosophila) relationship: part_of FBbt:00005319 ! stage 7 embryo (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) relationship: part_of UBERON:0000925 ! endoderm [Term] id: FBbt:00005560 name: posterior endoderm (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005522 alt_id: FBbt:00005525 def: "The posterior part of the endoderm from its invagination as part of the amnioproctodeal invagination during stage 7, until it becomes morphologically distinct from the hindgut primordium due to a epithelial-to-mesenchymal transition at the end of stage 10 (Reuter et al., 1993). This epithelial-to-mesenchymal transition is also the transition from posterior endoderm to posterior midgut primordium." [FlyBase:FBrf0068651, FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 postEndo" RELATED [FBC:ds555] synonym: "PMG" EXACT [FlyBase:FBrf0064803] synonym: "postEndo" RELATED [] synonym: "postEndoP2" RELATED [] synonym: "postMGRudP2" RELATED [] synonym: "posterior endoderm primordium P2" RELATED [] synonym: "posterior midgut primordium rudiment" RELATED [] synonym: "posterior midgut rudiment" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00000447 ! posterior endoderm anlage (Drosophila) relationship: part_of FBbt:00005319 ! stage 7 embryo (Drosophila) relationship: part_of FBbt:00005322 ! stage 8 embryo (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) relationship: part_of UBERON:0000925 ! endoderm [Term] id: FBbt:00005562 name: fat body/gonad namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "FaB/GP" RELATED [] [Term] id: FBbt:00005563 name: hindgut visceral mesoderm namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "HVM" RELATED [] [Term] id: FBbt:00005564 name: foregut visceral mesoderm namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "FVM" RELATED [] [Term] id: FBbt:00005565 name: ventral midline neuroblast (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) relationship: part_of FBbt:00016015 ! midline neuronal primordium (Drosophila) relationship: part_of UBERON:0009571 ! ventral midline [Term] id: FBbt:00005566 name: ventral midline neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000540 ! neuron relationship: develops_from FBbt:00005565 ! ventral midline neuroblast (Drosophila) relationship: part_of UBERON:0009571 ! ventral midline [Term] id: FBbt:00005568 name: embryonic antennal sense organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005806 ! antennal sense organ (Drosophila) relationship: develops_from FBbt:00005510 ! antennal primordium (Drosophila) relationship: part_of FBbt:00000160 ! embryonic antennal segment (Drosophila) [Term] id: FBbt:00005569 name: presumptive embryonic/larval tracheal system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval tracheal system. This corresponds to the tracheal primordia and their component tracheal branch primordia along with primordia of the spiracles." [FBC:DOS] subset: cur ! cur synonym: "embryonic tracheal system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00005571 name: embryonic tracheole (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005047 ! tracheole (Drosophila) relationship: develops_from FBbt:00017025 ! secondary branch/tracheole primordium (Drosophila) relationship: part_of FBbt:00005569 ! presumptive embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00005574 name: tracheal branch primordium (Drosophila) namespace: fly_anatomy.ontology def: "Developing tracheal branch of the embryo." [FBC:DOS] subset: cur ! cur synonym: "embryonic trachea" EXACT [] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00005578 name: lateral trunk primordium (Drosophila) namespace: fly_anatomy.ontology def: "Region of the tracheal primordium that gives rise to the embryonic/larval lateral trunk." [FBC:DOS] subset: cur ! cur synonym: "LT" RELATED [] synonym: "embryonic lateral trunk" EXACT [] synonym: "lateral longitudinal trunk primordium" EXACT [] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00005580 name: transverse connective primordium (Drosophila) namespace: fly_anatomy.ontology def: "Region of the tracheal primordium that develops into the embryonic/larval transverse connective. During stages 11 and 12, the invaginating tracheal pit forms an L shape. The arm of the L heading inwards from the surface forms the spiracular branch primordium, the other arm forms the transverse connective primordium." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "a and b branch" RELATED [] synonym: "embryonic transverse connective" EXACT [] synonym: "outer segmental trachea" RELATED [] synonym: "ventral segmental trachea" RELATED [] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00005581 name: dorsal branch primordium (Drosophila) namespace: fly_anatomy.ontology def: "Dorsally directed branch from the dorsal region of the tracheal primordium that develops into the embryonic/larval dorsal branch. It initially appears (during stage 12) as a continuation of the transverse connective primordium." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "dorsal trachea" RELATED [] synonym: "embryonic dorsal branch" EXACT [] synonym: "inner segmental trachea" RELATED [] synonym: "small dorsal commissure" RELATED [] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00005585 name: dorsal group branch precursor (Drosophila) namespace: fly_anatomy.ontology def: "Precursor of a dorsal group branch of the embryonic/larval tracheal system. These branches arise from late in stage 16 into the larval stages." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "embryonic dorsal group branch" EXACT [] is_a: FBbt:00017025 ! secondary branch/tracheole primordium (Drosophila) [Term] id: FBbt:00005589 name: spiracular branch primordium (Drosophila) namespace: fly_anatomy.ontology def: "Region of a tracheal primordium that develops into an embryonic/larval spiracular branch. During stages 11 and 12, the invaginating tracheal pit forms an L shape. The arm of the L heading inwards from the surface forms the spiracular branch primordium. In all except the first and tenth tracheal metameres, the spiracular branch collapses, forming a solid cord." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "embryonic spiracular branch" EXACT [] synonym: "spiracular trachea" RELATED [] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00005591 name: ganglionic branch primordium (Drosophila) namespace: fly_anatomy.ontology def: "Precursor of the embryonic/larval ganglionic branch. It originates as the region of the posterior trunk lateral branch proximal to the lateral spur that becomes the point of fusion between anterior and posterior lateral trunk branches." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "embryonic ganglionic branch" EXACT [] synonym: "ganglionic trachea" RELATED [] synonym: "i branch" RELATED [] synonym: "ventral ganglionic branch" RELATED [] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00005595 name: fat body branch primordium (Drosophila) namespace: fly_anatomy.ontology def: "Precursor of the embryonic/larval fat body branch. All originate as a branch from the transverse connective during stage 15 apart from the primordium in the first tracheal metamere which arises during the first instar larval stage." [FlyBase:FBrf0064787] subset: cur ! cur synonym: "c branch" RELATED [] synonym: "embryonic fat body branch" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) [Term] id: FBbt:00005597 name: lateral group branch precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "Precursor of an embryonic lateral group branch. These branches begin to sprout during stage 14." EXACT [FlyBase:FBrf0064787] is_a: FBbt:00017025 ! secondary branch/tracheole primordium (Drosophila) relationship: part_of FBbt:00005578 ! lateral trunk primordium (Drosophila) [Term] id: FBbt:00005599 name: primordium of embryonic/larval spiracle (Drosophila) namespace: fly_anatomy.ontology def: "A primordium that develops into an embryonic/larval spiracle." [FBC:DOS] subset: cur ! cur synonym: "embryonic spiracle" RELATED [] is_a: FBbt:10005248 ! spiracle primordium (Drosophila) [Term] id: FBbt:00005605 name: imaginal tracheal precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00005606 name: embryonic foregut (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00000438 ! presumptive embryonic/larval digestive system (Drosophila) [Term] id: FBbt:00005607 name: embryonic proventriculus (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005606 ! embryonic foregut (Drosophila) [Term] id: FBbt:00005608 name: embryonic proventriculus inner layer (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: develops_from FBbt:00018008 ! proventriculus inner layer primordium (Drosophila) relationship: part_of FBbt:00005607 ! embryonic proventriculus (Drosophila) [Term] id: FBbt:00005609 name: embryonic proventriculus intermediate layer (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: develops_from FBbt:00018009 ! proventriculus intermediate layer primordium (Drosophila) relationship: part_of FBbt:00005607 ! embryonic proventriculus (Drosophila) [Term] id: FBbt:00005610 name: embryonic proventriculus outer layer (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: develops_from FBbt:00017012 ! proventriculus outer layer primordium (Drosophila) relationship: part_of FBbt:00005607 ! embryonic proventriculus (Drosophila) [Term] id: FBbt:00005611 name: adult foregut precursor (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) relationship: develops_from FBbt:00018010 ! adult foregut precursor primordium (Drosophila) relationship: part_of FBbt:00005606 ! embryonic foregut (Drosophila) [Term] id: FBbt:00005612 name: embryonic esophagus (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001043 ! esophagus relationship: part_of FBbt:00005606 ! embryonic foregut (Drosophila) [Term] id: FBbt:00005613 name: embryonic hypopharynx (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0003132 ! arthropod hypopharynx relationship: part_of FBbt:00005606 ! embryonic foregut (Drosophila) [Term] id: FBbt:00005614 name: embryonic epipharynx (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005750 ! epipharynx (Drosophila) relationship: part_of FBbt:00005606 ! embryonic foregut (Drosophila) [Term] id: FBbt:00005615 name: atrium (Drosophila) namespace: fly_anatomy.ontology def: "Most anterior stretch of the embryonic/larval foregut. Its posterior boundary, where the pharynx starts is immediately posterior to the openings of the salivary gland ducts." [FlyBase:FBrf0089570] subset: cur ! cur synonym: "mouth cavity" RELATED [] is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from FBbt:00005534 ! gnathal primordium (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00005616 name: embryonic foregut sensory structure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007234 ! compound sense organ (Drosophila) relationship: part_of FBbt:00005606 ! embryonic foregut (Drosophila) [Term] id: FBbt:00005617 name: labral sensory complex (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00007316 ! sensory cluster (Drosophila) relationship: develops_from FBbt:00005546 ! labral sensory complex primordium (Drosophila) relationship: part_of FBbt:00001734 ! larval labral segment (Drosophila) [Term] id: FBbt:00005618 name: embryonic maxillary sensory complex (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005616 ! embryonic foregut sensory structure (Drosophila) relationship: develops_from FBbt:00005544 ! maxillary sensory complex primordium (Drosophila) [Term] id: FBbt:00005619 name: embryonic labial sensory complex (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00007279 ! labial complex (Drosophila) relationship: develops_from FBbt:00005545 ! labial sensory complex primordium (Drosophila) [Term] id: FBbt:00005620 name: presumptive embryonic salivary gland (Drosophila) namespace: fly_anatomy.ontology def: "The sum of the primordia in the embryo that will contribute to the embryonic/larval salivary gland." [FBC:DOS] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005606 ! embryonic foregut (Drosophila) [Term] id: FBbt:00005622 name: embryonic salivary gland duct (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00100313 ! multicellular structure (Drosophila) relationship: part_of FBbt:00005620 ! presumptive embryonic salivary gland (Drosophila) [Term] id: FBbt:00005624 name: embryonic/larval midgut primordium (Drosophila) namespace: fly_anatomy.ontology def: "A primordium that is a progenitor of all or some part of the embryonic/larval midgut." [FBC:DOS] subset: cur ! cur synonym: "embryonic midgut" RELATED [] is_a: FBbt:00005246 ! midgut primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00000438 ! presumptive embryonic/larval digestive system (Drosophila) [Term] id: FBbt:00005628 name: embryonic midgut chamber (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000452 def: "Chamber of the developing midgut that is a transient subdivision along its length resulting from circumferential constrictions of the embryonic midgut between stages 15 and mid-stage 16." [FlyBase:FBrf0051566] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of FBbt:00007593 ! fused midgut primordium (Drosophila) [Term] id: FBbt:00005630 name: embryonic hindgut (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001046 ! hindgut relationship: part_of FBbt:00000438 ! presumptive embryonic/larval digestive system (Drosophila) [Term] id: FBbt:00005631 name: embryonic small intestine (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00005504 ! small intestine primordium (Drosophila) relationship: part_of FBbt:00005630 ! embryonic hindgut (Drosophila) [Term] id: FBbt:00005632 name: embryonic large intestine (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00005505 ! large intestine primordium (Drosophila) relationship: part_of FBbt:00005630 ! embryonic hindgut (Drosophila) [Term] id: FBbt:00005633 name: embryonic rectum (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0006866 ! terminal part of digestive tract relationship: part_of FBbt:00005630 ! embryonic hindgut (Drosophila) [Term] id: FBbt:00005634 name: embryonic Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001054 ! Malpighian tubule relationship: part_of FBbt:00005630 ! embryonic hindgut (Drosophila) [Term] id: FBbt:00005635 name: embryonic posterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005634 ! embryonic Malpighian tubule (Drosophila) is_a: FBbt:00005787 ! posterior Malpighian tubule (Drosophila) relationship: develops_from FBbt:00005501 ! Malpighian tubule main body primordium (Drosophila) [Term] id: FBbt:00005636 name: embryonic anterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005634 ! embryonic Malpighian tubule (Drosophila) is_a: FBbt:00005788 ! anterior Malpighian tubule (Drosophila) relationship: develops_from FBbt:00005501 ! Malpighian tubule main body primordium (Drosophila) [Term] id: FBbt:00005637 name: embryonic Malpighian tubule segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005789 ! Malpighian tubule segment (Drosophila) relationship: part_of FBbt:00005634 ! embryonic Malpighian tubule (Drosophila) [Term] id: FBbt:00005638 name: embryonic initial segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005637 ! embryonic Malpighian tubule segment (Drosophila) is_a: FBbt:00005790 ! initial segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00005639 name: embryonic transitional segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005637 ! embryonic Malpighian tubule segment (Drosophila) is_a: FBbt:00005791 ! transitional segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00005640 name: embryonic main segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005637 ! embryonic Malpighian tubule segment (Drosophila) is_a: FBbt:00005792 ! main segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00005641 name: embryonic ureter (Drosophila) namespace: fly_anatomy.ontology def: "Proximal segment connecting a pair of Malpighian tubules to the alimentary canal in the embryo. The ureter is surrounded by longitudinal and circular muscles." [FlyBase:FBrf0030988] subset: cur ! cur is_a: FBbt:00005637 ! embryonic Malpighian tubule segment (Drosophila) is_a: FBbt:00005793 ! ureter (Drosophila) [Term] id: FBbt:00005642 name: embryonic specialised Malpighian tubule cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005794 ! specialised Malpighian tubule cell (Drosophila) relationship: part_of FBbt:00005634 ! embryonic Malpighian tubule (Drosophila) [Term] id: FBbt:00005643 name: embryonic Malpighian tubule tip cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005642 ! embryonic specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005795 ! Malpighian tubule tip cell (Drosophila) relationship: develops_from FBbt:00005502 ! Malpighian tubule tip cell primordium (Drosophila) [Term] id: FBbt:00005644 name: embryonic Malpighian tubule Type I cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005642 ! embryonic specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005796 ! Malpighian tubule Type I cell (Drosophila) [Term] id: FBbt:00005645 name: embryonic Malpighian tubule Type II cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005642 ! embryonic specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005797 ! Malpighian tubule Type II cell (Drosophila) [Term] id: FBbt:00005646 name: adult hindgut precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) relationship: develops_from FBbt:00005513 ! adult hindgut primordium (Drosophila) relationship: part_of FBbt:00005630 ! embryonic hindgut (Drosophila) [Term] id: FBbt:00005647 name: presumptive embryonic/larval muscle system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval muscle system." [FlyBase:FBrf0031016, FlyBase:FBrf0041814, FlyBase:FBrf0044229, FlyBase:FBrf0064793] subset: cur ! cur synonym: "embryonic muscle system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00005649 name: embryonic somatic muscle (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0005090 ! muscle structure [Term] id: FBbt:00005651 name: embryonic hypodermal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005649 ! embryonic somatic muscle (Drosophila) [Term] id: FBbt:00005653 name: embryonic visceral muscle (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005070 ! visceral muscle (Drosophila) [Term] id: FBbt:00005655 name: embryonic esophageal muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005653 ! embryonic visceral muscle (Drosophila) relationship: part_of FBbt:00005612 ! embryonic esophagus (Drosophila) [Term] id: FBbt:00005657 name: embryonic gonadal sheath muscle namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00001054 ! embryonic/larval gonadal sheath muscle (Drosophila) consider: FBbt:00005473 ! gonadal sheath proper primordium (Drosophila) subset: cur ! cur [Term] id: FBbt:00005659 name: embryonic optic lobe (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001056 ! presumptive embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00005660 name: embryonic inner optic lobe (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00000461 ! embryonic inner optic lobe primordium (Drosophila) relationship: part_of FBbt:00005659 ! embryonic optic lobe (Drosophila) [Term] id: FBbt:00005661 name: embryonic outer optic lobe (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00005822 ! embryonic outer optic lobe primordium (Drosophila) relationship: part_of FBbt:00001060 ! embryonic brain (Drosophila) relationship: part_of FBbt:00005659 ! embryonic optic lobe (Drosophila) [Term] id: FBbt:00005662 name: embryonic central brain (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001060 ! embryonic brain (Drosophila) [Term] id: FBbt:00005663 name: embryonic central brain glial cell (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "embryonic central brain glia" EXACT [] is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00005662 ! embryonic central brain (Drosophila) [Term] id: FBbt:00005664 name: embryonic central brain surface glia (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005152 ! glial cell of the perineurium (Drosophila) is_a: FBbt:00005663 ! embryonic central brain glial cell (Drosophila) [Term] id: FBbt:00005665 name: embryonic central brain neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000540 ! neuron relationship: part_of FBbt:00005662 ! embryonic central brain (Drosophila) [Term] id: FBbt:00005667 name: embryonic central brain pars intercerebralis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001059 ! pars intercerebralis relationship: develops_from FBbt:00005511 ! pars intercerebralis primordium (Drosophila) relationship: part_of FBbt:00005662 ! embryonic central brain (Drosophila) [Term] id: FBbt:00005668 name: embryonic frontal ganglion (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005803 ! frontal ganglion (Drosophila) relationship: develops_from FBbt:00018003 ! frontal ganglion primordium (Drosophila) relationship: part_of FBbt:00001069 ! embryonic stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005669 name: embryonic hypocerebral ganglion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005804 ! hypocerebral ganglion (Drosophila) relationship: develops_from FBbt:00018004 ! hypocerebral/esophageal ganglion primordium (Drosophila) relationship: part_of FBbt:00001069 ! embryonic stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005670 name: embryonic esophageal ganglion (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005760 ! esophageal ganglion (Drosophila) relationship: develops_from FBbt:00018004 ! hypocerebral/esophageal ganglion primordium (Drosophila) relationship: part_of FBbt:00001069 ! embryonic stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005671 name: embryonic proventricular ganglion (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005761 ! proventricular ganglion (Drosophila) relationship: develops_from FBbt:00018005 ! proventricular ganglion primordium (Drosophila) relationship: part_of FBbt:00001069 ! embryonic stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005672 name: lateral cord (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00005673 name: lateral cord glial cell (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "lateral cord glia" EXACT [] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00005672 ! lateral cord (Drosophila) [Term] id: FBbt:00005674 name: prothoracic leg disc-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005517 ! leg disc-derived cell-line (Drosophila) [Term] id: FBbt:00005675 name: lateral cord neuron (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00005672 ! lateral cord (Drosophila) [Term] id: FBbt:00005676 name: presumptive embryonic/larval circulatory system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval circulatory system." [FlyBase:FBrf0031012] subset: cur ! cur synonym: "embryonic circulatory system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00005678 name: embryonic pericardial cell (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00005680 name: embryonic dorsal vessel (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00001665 ! dorsal vessel primordium (Drosophila) [Term] id: FBbt:00005682 name: aorta primordium (Drosophila) namespace: fly_anatomy.ontology def: "The region of the dorsal vessel primordium that gives rise to the embryonic/larval aorta." [FBC:DOS] subset: cur ! cur synonym: "embryonic aorta" RELATED [FBC:DOS] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001665 ! dorsal vessel primordium (Drosophila) [Term] id: FBbt:00005684 name: heart primordium (Drosophila) namespace: fly_anatomy.ontology def: "The region of the dorsal vessel primordium that gives rise to the embryonic/larval heart." [FBC:DOS] subset: cur ! cur synonym: "embryonic heart" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001665 ! dorsal vessel primordium (Drosophila) [Term] id: FBbt:00005686 name: embryonic cardiovascular gland namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00001668 ! embryonic/larval lymph gland (Drosophila) consider: FBbt:00001722 ! ring gland (Drosophila) consider: FBbt:00005467 ! lymph gland primordium (Drosophila) consider: FBbt:00017009 ! ring gland primordium (Drosophila) comment: Obsoleted because I can find no trace of usage of this term in curation or in the literature despite an extensive search. The ontology term originated as 'cardiovascular gland' in the earliest versions of the anatomy ontology (as a simple nested CV circa 1992) with a reference to FBrf0031012 == Rizki, 1978, Ashburner, Wright, 1978-1980 b: 397--452. However, this reference contains no mention of a cardiovascular gland. The two obvious candidates to map this to are the ring gland or the lymph gland (or their progenitors, as this is an embryonic term) as both are associated with the anterior of the dorsal vessel. However, the earliest versions of the anatomy CV also have terms for these. DOS110317 subset: cur ! cur [Term] id: FBbt:00005690 name: embryonic ostia 1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00001678 ! embryonic/larval ostia 1 (Drosophila) subset: cur ! cur [Term] id: FBbt:00005692 name: embryonic ostia 2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00001679 ! embryonic/larval ostia 2 (Drosophila) subset: cur ! cur [Term] id: FBbt:00005694 name: embryonic ostia 3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00001680 ! embryonic/larval ostia 3 (Drosophila) subset: cur ! cur [Term] id: FBbt:00005696 name: embryonic hemocoel (Drosophila) namespace: fly_anatomy.ontology def: "Hemocoel of the embryo." [FBC:SPR] subset: cur ! cur is_a: UBERON:0002323 ! body cavity [Term] id: FBbt:00005698 name: embryonic hemolymph (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001011 ! hemolymph [Term] id: FBbt:00005700 name: embryonic hemocyte (Drosophila) namespace: fly_anatomy.ontology def: "Hemocyte of the embryo." [FlyBase:FBrf0037631] subset: cur ! cur synonym: "embryonic blood cell" RELATED [] is_a: FBbt:00005063 ! hemocyte (Drosophila) [Term] id: FBbt:00005702 name: embryonic garland organ (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100313 ! multicellular structure (Drosophila) [Term] id: FBbt:00005704 name: embryonic garland cell (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "nephrocyte" RELATED [] synonym: "wreath cell" RELATED [] is_a: FBbt:00007002 ! cell (Drosophila) [Term] id: FBbt:00005708 name: presumptive embryonic/larval adipose system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval adipose system." [FBC:DOS] subset: cur ! cur synonym: "embryonic adipose system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00005710 name: embryonic fat body (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0003917 ! arthropod fat body [Term] id: FBbt:00005712 name: presumptive embryonic/larval endocrine system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the structures in the embryo that will develop into the embryonic/larval endocrine system." [FBC:DOS] subset: cur ! cur synonym: "embryonic endocrine system" RELATED [FBC:DOS] is_a: FBbt:00007116 ! presumptive embryonic/larval system (Drosophila) [Term] id: FBbt:00005714 name: embryonic tentorium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) [Term] id: FBbt:00005716 name: embryonic peritrophic membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003142 ! peritrophic membrane (Drosophila) [Term] id: FBbt:00005718 name: embryonic/larval excretory system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval excretory system" EXACT [] is_a: UBERON:0001008 ! excretory system relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00005720 name: lamina anlage glial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00001939 ! lamina anlage (Drosophila) [Term] id: FBbt:00005721 name: epithelial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Cuboidal glial cell found in the visual system of larvae and adults, located more distal than the row of marginal glial cells. It elaborates numerous fine processes into the lamina plexus, especially from the surface juxtaposing the R1-R6 growth cones or axon termini (Poeck et al., 2001). These glial cells contact marginal glia at their base and satellite glia at their apex, and constitute the only class of cells with nuclei in the distal neuropil proper (Edwards and Meinertzhagen, 2010)." [FlyBase:FBrf0055906, FlyBase:FBrf0134808, FlyBase:FBrf0209968, FlyBase:FBrf0210316] subset: cur ! cur is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of UBERON:0000955 ! brain [Term] id: FBbt:00005722 name: marginal glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Cuboidal glial cell of the optic lobe elaborating numerous fine processes. It is located in a layer at the proximal surface of the lamina, with one marginal glial cell per cartridge (Edwards and Meinertzhagen, 2010). Processes extend from the apical side into the lamina to envelop axons and trachea. It is between the marginal glial cells and epithelial glial cells that the R1-R6 growth cones terminate (Poeck et al., 2001; Winberg et al., 1992)." [FlyBase:FBrf0055906, FlyBase:FBrf0134808] subset: cur ! cur synonym: "proximal glial cell" RELATED [FlyBase:FBrf0134808] is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) relationship: part_of FBbt:00003747 ! optic cartridge (Drosophila) [Term] id: FBbt:00005723 name: satellite glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell with long ensheathing processes of the optic lobe that are interspersed among the lamina neurons (Poeck et al., 2001)." [FlyBase:FBrf0055906, FlyBase:FBrf0096428, FlyBase:FBrf0134808] subset: cur ! cur is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00005724 name: adult excretory system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001008 ! excretory system relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00005725 name: adult Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001054 ! Malpighian tubule relationship: part_of FBbt:00005724 ! adult excretory system (Drosophila) [Term] id: FBbt:00005726 name: adult posterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology def: "Malpighian tubule attached to the left hand side of the adult alimentary canal and lying in an posterior orientation (Wessing and Eichelberg, 1978)." [FlyBase:FBrf0030988] subset: cur ! cur is_a: FBbt:00005725 ! adult Malpighian tubule (Drosophila) is_a: FBbt:00005787 ! posterior Malpighian tubule (Drosophila) [Term] id: FBbt:00005727 name: adult anterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology def: "Malpighian tubule attached to the right hand side of the adult alimentary canal and lying in an anterior orientation (Wessing and Eichelberg, 1978)." [FlyBase:FBrf0030988] subset: cur ! cur is_a: FBbt:00005725 ! adult Malpighian tubule (Drosophila) is_a: FBbt:00005788 ! anterior Malpighian tubule (Drosophila) [Term] id: FBbt:00005728 name: adult Malpighian tubule segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005789 ! Malpighian tubule segment (Drosophila) relationship: part_of FBbt:00005725 ! adult Malpighian tubule (Drosophila) [Term] id: FBbt:00005729 name: adult initial segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005728 ! adult Malpighian tubule segment (Drosophila) is_a: FBbt:00005790 ! initial segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00005730 name: adult transitional segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005728 ! adult Malpighian tubule segment (Drosophila) is_a: FBbt:00005791 ! transitional segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00005731 name: adult main segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005728 ! adult Malpighian tubule segment (Drosophila) is_a: FBbt:00005792 ! main segment of Malpighian tubule (Drosophila) [Term] id: FBbt:00005732 name: adult ureter (Drosophila) namespace: fly_anatomy.ontology def: "Proximal segment connecting a pair of Malpighian tubules to the alimentary canal in the adult. The ureter is surrounded by longitudinal and circular muscles." [FlyBase:FBrf0030988, FlyBase:FBrf0160493] subset: cur ! cur is_a: FBbt:00005728 ! adult Malpighian tubule segment (Drosophila) is_a: FBbt:00005793 ! ureter (Drosophila) [Term] id: FBbt:00005733 name: adult specialised Malpighian tubule cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005794 ! specialised Malpighian tubule cell (Drosophila) relationship: part_of FBbt:00005725 ! adult Malpighian tubule (Drosophila) [Term] id: FBbt:00005734 name: adult Malpighian tubule tip cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005733 ! adult specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005795 ! Malpighian tubule tip cell (Drosophila) [Term] id: FBbt:00005735 name: adult Malpighian tubule Type I cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005733 ! adult specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005796 ! Malpighian tubule Type I cell (Drosophila) [Term] id: FBbt:00005736 name: adult Malpighian tubule Type II cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005733 ! adult specialised Malpighian tubule cell (Drosophila) is_a: FBbt:00005797 ! Malpighian tubule Type II cell (Drosophila) [Term] id: FBbt:00005737 name: S2 cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005369 ! embryo-derived cell-line (Drosophila) [Term] id: FBbt:00005738 name: medulla neuropil glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell located in the medulla neuropil. The cell body lies at the border between the medulla cell body cortex and the medulla neuropil and send long regular extensions into the medulla neuropil (Tix et al., 1997)." [FlyBase:FBrf0096428, FlyBase:FBrf0134808, FlyBase:FBrf0210316] synonym: "MNG" RELATED [FlyBase:FBrf0096428] synonym: "medulla glial cell" RELATED [] is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of FBbt:00003748 ! medulla (Drosophila) [Term] id: FBbt:00005739 name: eyelet (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of 4 extra-retinal photoreceptors located beneath the basement membrane, at the posterior margin of the compound eye, near to the equator. Derived from the larval Bolwig's organ." [FlyBase:FBrf0111143, FlyBase:FBrf0152146] subset: cur ! cur is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) is_a: UBERON:0000970 ! eye relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00005740 name: eyelet photoreceptor (Drosophila) namespace: fly_anatomy.ontology def: "Cholinergic, rhabdomeric photoreceptor cell which is part of the eyelet (Yasuyama and Meinertzhagen, 1999). Eyelet photoreceptors function in entrainment of the circadian clock to photoperiod (Helfrich-Forster et al., 2002). Their axons terminate in the accessory medulla (Helfrich-Forster et al., 2007)." [FlyBase:FBrf0111143, FlyBase:FBrf0152146, FlyBase:FBrf0193849] comment: Evidence that this is a cholinergic sensory neuron comes from staining for choline acetyltransferase expression. (Yasuyama and Meinertzhagen, 1999). subset: cur ! cur synonym: "H-B eyelet photoreceptor" EXACT [] is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00007173 ! cholinergic neuron (Drosophila) is_a: FBbt:00007251 ! rhabdomeric photoreceptor cell (Drosophila) relationship: part_of FBbt:00005739 ! eyelet (Drosophila) [Term] id: FBbt:00005741 name: embryonic head epidermis (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005397 ! embryonic epidermis (Drosophila) [Term] id: FBbt:00005743 name: embryonic dorsal pouch (Drosophila) namespace: fly_anatomy.ontology comment: Editing Flag: This probably needs fixing. There seem to be two different things referred to as a dorsal pouch. One is a transitional structure formed during development of the head, and the other is an unrelated larval structure. Need to disambiguate/disentangle. Note - possible redundancy between primordium term and embryonic term. ds060616. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005807 ! dorsal pouch (Drosophila) relationship: part_of FBbt:00005741 ! embryonic head epidermis (Drosophila) [Term] id: FBbt:00005744 name: embryonic dorsal epidermis (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00016019 ! dorsal trunk epidermis primordium (Drosophila) relationship: part_of FBbt:00005397 ! embryonic epidermis (Drosophila) [Term] id: FBbt:00005745 name: embryonic dorsal apodeme (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005091 ! apodeme (Drosophila) relationship: develops_from FBbt:00016021 ! dorsal apodeme primordium (Drosophila) [Term] id: FBbt:00005746 name: embryonic leading edge cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell at the leading edge of the dorsal epidermis during dorsal closure." [FBC:DOS] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00007325 ! epidermal cell (Drosophila) relationship: develops_from FBbt:00005475 ! embryonic leading edge cell primordium (Drosophila) relationship: part_of FBbt:00005744 ! embryonic dorsal epidermis (Drosophila) [Term] id: FBbt:00005747 name: embryonic ventral epidermis (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005397 ! embryonic epidermis (Drosophila) [Term] id: FBbt:00005748 name: embryonic anal pad (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005785 ! anal pad (Drosophila) relationship: develops_from FBbt:00016008 ! anal pad primordium (Drosophila) relationship: part_of FBbt:00005747 ! embryonic ventral epidermis (Drosophila) [Term] id: FBbt:00005749 name: embryonic ventral apodeme (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00005091 ! apodeme (Drosophila) relationship: develops_from FBbt:00016010 ! ventral apodeme primordium (Drosophila) relationship: part_of FBbt:00005747 ! embryonic ventral epidermis (Drosophila) [Term] id: FBbt:00005750 name: epipharynx (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001041 ! foregut [Term] id: FBbt:00005752 name: proventriculus (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001007 ! digestive system [Term] id: FBbt:00005753 name: proventriculus inner layer (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000483 ! epithelium relationship: part_of FBbt:00005752 ! proventriculus (Drosophila) [Term] id: FBbt:00005754 name: proventriculus intermediate layer (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000483 ! epithelium relationship: part_of FBbt:00005752 ! proventriculus (Drosophila) [Term] id: FBbt:00005755 name: proventriculus outer layer (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000483 ! epithelium relationship: part_of FBbt:00005752 ! proventriculus (Drosophila) [Term] id: FBbt:00005758 name: hindgut visceral muscle fiber (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "hindgut visceral muscle fibers" RELATED [] is_a: FBbt:00005075 ! muscle fiber (Drosophila) relationship: develops_from FBbt:00005499 ! hindgut visceral muscle primordium (Drosophila) [Term] id: FBbt:00005759 name: foregut visceral muscle fiber (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "foregut visceral muscle fibers" EXACT [] is_a: FBbt:00005075 ! muscle fiber (Drosophila) relationship: develops_from FBbt:00005500 ! foregut visceral muscle primordium (Drosophila) [Term] id: FBbt:00005760 name: esophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Ganglion of the embryonic/larval brain lying apposed to the esophagus and linked to the proventricular ganglion." [FlyBase:FBrf0089570] subset: cur ! cur is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00005096 ! stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005761 name: proventricular ganglion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00005096 ! stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005762 name: scolopale (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000382 ! scolopidium [Term] id: FBbt:00005763 name: scolopidial cilium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00005223 ! scolopidial dendrite (Drosophila) [Term] id: FBbt:00005776 name: anterior larval midgut (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001883 ! anterior embryonic/larval midgut (Drosophila) [Term] id: FBbt:00005777 name: mid larval midgut (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001884 ! mid embryonic/larval midgut (Drosophila) [Term] id: FBbt:00005778 name: posterior larval midgut (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001885 ! posterior embryonic/larval midgut (Drosophila) [Term] id: FBbt:00005780 name: mushroom body dorsal paired medial cell (Drosophila) namespace: fly_anatomy.ontology def: "A mushroom body intrinsic neuron whose large cell body (~12um) is part of a bilateral pair of neurons located on the posterior ventral superior medial protocerebrum and antler region of the brain. A single neurite extends towards the ipsilateral mushroom body and bifurcates in the superior neuropils. One branch extensively arborizes within the mushroom body alpha and alpha' lobes, whilst the other branch extensively arborizes within the mushroom body beta, beta' and gamma lobe complexes. The processes also form a network of fibers and terminations in the mushroom body spur and anterior region of the pedunculus. There are no detectable projections to any other brain neuropil region (Waddell et al., 2000)." [FlyBase:FBrf0132261, FlyBase:FBrf0205263] comment: Because in theory there are many paired neurons in the dorsal medial area of the brain, we adopt the nomenclature of Tanaka et al., (2008), and refer to this cell as 'mushroom body dorsal paired medial cell' rather than 'dorsal paired medial cell'. subset: cur ! cur synonym: "DPM" RELATED [] synonym: "MB-DPM" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10445] synonym: "dorsal paired medial cell" EXACT [FlyBase:FBrf0205263] xref: FlyBrain_NDB:10445 is_a: FBbt:00007484 ! mushroom body intrinsic neuron (Drosophila) [Term] id: FBbt:00005781 name: gastric caecum (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001877 def: "Blind sac that branches from the anterior-most region of the embryonic/larva midgut (ventriculus). There are four of these per animal. Their cells have a similar morphology to those of the midgut epithelium." [FlyBase:FBrf0007733] subset: cur ! cur synonym: "embryonic/larval gastric caecum" EXACT [] synonym: "larval gastric caecum" EXACT [] is_a: UBERON:0009854 ! digestive tract diverticulum relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00005782 name: cuprophilic cell (Drosophila) namespace: fly_anatomy.ontology def: "Large cell in the middle region of the midgut that is cup-shaped with long microvilli. In animals fed on a copper rich diet, these cells accumulate copper." [FlyBase:FBrf0064792] subset: cur ! cur is_a: CL:0000066 ! epithelial cell relationship: part_of UBERON:0001045 ! midgut [Term] id: FBbt:00005783 name: midgut interstitial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000066 ! epithelial cell relationship: part_of UBERON:0001045 ! midgut [Term] id: FBbt:00005784 name: principal midgut epithelial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000066 ! epithelial cell relationship: part_of UBERON:0001045 ! midgut [Term] id: FBbt:00005785 name: anal pad (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001046 ! hindgut [Term] id: FBbt:00005787 name: posterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00005788 name: anterior Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00005789 name: Malpighian tubule segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0003914 ! epithelial tube relationship: part_of UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00005790 name: initial segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005789 ! Malpighian tubule segment (Drosophila) [Term] id: FBbt:00005791 name: transitional segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005789 ! Malpighian tubule segment (Drosophila) [Term] id: FBbt:00005792 name: main segment of Malpighian tubule (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005789 ! Malpighian tubule segment (Drosophila) [Term] id: FBbt:00005793 name: ureter (Drosophila) namespace: fly_anatomy.ontology def: "Proximal segment connecting a pair of Malpighian tubules to the alimentary canal. The ureter is surrounded by longitudinal and circular muscles." [FlyBase:FBrf0030988] subset: cur ! cur is_a: FBbt:00005789 ! Malpighian tubule segment (Drosophila) [Term] id: FBbt:00005794 name: specialised Malpighian tubule cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00005795 name: Malpighian tubule tip cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005794 ! specialised Malpighian tubule cell (Drosophila) [Term] id: FBbt:00005796 name: Malpighian tubule Type I cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005794 ! specialised Malpighian tubule cell (Drosophila) [Term] id: FBbt:00005797 name: Malpighian tubule Type II cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005794 ! specialised Malpighian tubule cell (Drosophila) [Term] id: FBbt:00005798 name: excretory structure (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:00005803 name: frontal ganglion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00005096 ! stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005804 name: hypocerebral ganglion (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00005096 ! stomatogastric nervous system (Drosophila) [Term] id: FBbt:00005805 name: Bolwig organ (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002643 alt_id: FBbt:00005742 alt_id: FBbt:00015250 def: "Visual organ of the larva. It consists of a dense cluster of 12 ciliated photoreceptor neurons." [FlyBase:FBrf0089570] comment: Location in ocular segment on basis of FBrf0075072. subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur synonym: "Bolwig's organ" EXACT [] synonym: "dorsocaudal pharyngeal sense organ" RELATED [] synonym: "embryonic Bolwig's organ" EXACT [] synonym: "embryonic visual system" EXACT [] synonym: "larval Bolwig's organ" EXACT [] is_a: FBbt:00002642 ! embryonic/larval ocular segment sensillum (Drosophila) is_a: FBbt:00007233 ! internal sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) is_a: UBERON:0000970 ! eye relationship: develops_from FBbt:00005830 ! Bolwig organ primordium (Drosophila) relationship: part_of FBbt:00001731 ! larval ocular segment (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) [Term] id: FBbt:00005806 name: antennal sense organ (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004171 def: "Any sense organ (FBbt:00005155) that is part of some antennal segment (FBbt:00000009)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "antennal sensillum" EXACT [] is_a: UBERON:0000020 ! sense organ relationship: part_of FBbt:00000009 ! antennal segment (Drosophila) [Term] id: FBbt:00005807 name: dorsal pouch (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007376 ! outer epithelial layer [Term] id: FBbt:00005808 name: dendritic cap cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005163 ! sensory organ cell (Drosophila) [Term] id: FBbt:00005809 name: sperm derived structure (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0102484] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from CL:0000019 ! sperm relationship: part_of FBbt:00005290 ! pre-blastoderm embryo (Drosophila) [Term] id: FBbt:00005810 name: first optic chiasm (Drosophila) namespace: fly_anatomy.ontology def: "Chiasm lying between the lamina and medulla of the optic lobe. Axons from the anterior side of the lamina project to the posterior side of the medulla." [FBC:BrainName] subset: cur ! cur synonym: "FOCH" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "first optic chiasma" EXACT [] synonym: "outer optic chiasm" EXACT [] is_a: FBbt:00003921 ! optic chiasm (Drosophila) [Term] id: FBbt:00005811 name: articulation (Drosophila) namespace: fly_anatomy.ontology def: "A moveable joint or junction between two sclerites." [FlyBase:FBrf0111704] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of UBERON:0002416 ! integumental system [Term] id: FBbt:00005812 name: myotube (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0005090 ! muscle structure [Term] id: FBbt:00005813 name: apophysis (Drosophila) namespace: fly_anatomy.ontology def: "Any spiniform or tubercular projection of the exo- or endoskeleton of the insect body, when internal frequently giving support for muscle attachment." [FlyBase:FBrf0111704, ISBN:978-3-11-014898-5] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of FBbt:00005089 ! muscle attachment site (Drosophila) [Term] id: FBbt:00005814 name: chiasm (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005102 def: "A tract of nerve fibers, passing between neuropils on opposite sides of the nervous system, organized such that the linear order of axons on one side is reversed on the other." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] comment: Candidate for deprecation according to BrainName 2010. subset: cur ! cur synonym: "decussation" EXACT [] is_a: FBbt:00007084 ! midline crossing tract (Drosophila) [Term] id: FBbt:00005815 name: dense body (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic ribbon at neuromuscular junction." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001029 ! neuromuscular junction [Term] id: FBbt:00005816 name: CNS-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005329 ! cultured cell-line (Drosophila) [Term] id: FBbt:00005817 name: eye-antenna disc-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005342 ! imaginal disc-derived cell-line (Drosophila) [Term] id: FBbt:00005818 name: Malpighian tubule tip cell specific anlage namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur [Term] id: FBbt:00005819 name: haltere disc-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005342 ! imaginal disc-derived cell-line (Drosophila) [Term] id: FBbt:00005820 name: antenna disc-derived cell-line (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005817 ! eye-antenna disc-derived cell-line (Drosophila) [Term] id: FBbt:00005821 name: adult neuromuscular junction (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adult NMJ" EXACT [] is_a: UBERON:0001029 ! neuromuscular junction [Term] id: FBbt:00005822 name: embryonic outer optic lobe primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 OOA" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) relationship: develops_from FBbt:00001059 ! visual primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005823 name: lateral cord subset glial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lateral cord subset glia" EXACT [] is_a: FBbt:00005673 ! lateral cord glial cell (Drosophila) [Term] id: FBbt:00005824 name: lateral cord surface glial cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "lateral cord surface glia" EXACT [] is_a: FBbt:00005673 ! lateral cord glial cell (Drosophila) [Term] id: FBbt:00005828 name: embryonic head sensory system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001032 ! sensory system [Term] id: FBbt:00005829 name: adult peritrophic membrane (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00003142 ! peritrophic membrane (Drosophila) relationship: part_of FBbt:00003138 ! adult midgut (Drosophila) [Term] id: FBbt:00005830 name: Bolwig organ primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Bolwig's organ primordium" EXACT [] synonym: "P1 BolOrg" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00001059 ! visual primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00005831 name: dorsal imaginal precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005023 ! imaginal precursor (Drosophila) [Term] id: FBbt:00005832 name: dorsal ectoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00005428 ! dorsal ectoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur synonym: "A0dorEC" RELATED [] [Term] id: FBbt:00005833 name: mesectoderm anlage in statu nascendi namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000109 ! mesectoderm anlage (Drosophila) comment: Check stage is appropriate before substituting 'consider' term. subset: cur ! cur [Term] id: FBbt:00005834 name: ventral imaginal precursor (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005023 ! imaginal precursor (Drosophila) [Term] id: FBbt:00005836 name: lateral cord subset neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005675 ! lateral cord neuron (Drosophila) [Term] id: FBbt:00005837 name: embryonic/larval neuromuscular junction (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "larval NMJ" EXACT [] synonym: "larval neuromuscular junction" EXACT [] is_a: UBERON:0001029 ! neuromuscular junction [Term] id: FBbt:00005838 name: NMJ bouton (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001029 ! neuromuscular junction [Term] id: FBbt:00005839 name: type I bouton (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005838 ! NMJ bouton (Drosophila) [Term] id: FBbt:00005840 name: type II bouton (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005838 ! NMJ bouton (Drosophila) [Term] id: FBbt:00005841 name: type III bouton (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0167817] subset: cur ! cur is_a: FBbt:00005838 ! NMJ bouton (Drosophila) [Term] id: FBbt:00005842 name: Pad1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005843 name: Pad2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005844 name: Pad3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005845 name: Pad4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005846 name: Pad5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005847 name: Pad6 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 6 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005848 name: Pad7 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 7 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005849 name: Pad8 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 8 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005850 name: Pad9 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 9 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005851 name: Pad10 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 10 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005852 name: Pad11 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 11 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005853 name: Pad12 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 12 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005854 name: Pad13 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 13 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005855 name: Pad14 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 14 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005856 name: Pad15 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 15 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005857 name: Pad16 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 16 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005858 name: Pad17 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 17 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005859 name: Pad18 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 18 of the dorsal anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005874 ! dorsal anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005860 name: dorsal anterior deuterocerebral neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "dorsal anterior deutocerebral neuroblast" EXACT [] [Term] id: FBbt:00005861 name: ventral anterior deuterocerebral neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "ventral anterior deutocerebral neuroblast" EXACT [] [Term] id: FBbt:00005862 name: Pav1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the ventral anterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005875 ! ventral anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005863 name: dorsal central deuterocerebral neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "dorsal central deutocerebral neuroblast" EXACT [] [Term] id: FBbt:00005864 name: Pcd1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005865 name: Pcd2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005866 name: Pcd3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005867 name: Pcd4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005868 name: Pcd5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005869 name: Pcd6 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 6 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005870 name: Pcd7 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 7 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005871 name: Pcd8 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 8 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005872 name: Ppd2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the posterior dorsal protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005873 name: Ppd3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the posterior dorsal protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005874 name: dorsal anterior protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the dorsal region of the anterior protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur is_a: FBbt:00001335 ! anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005875 name: ventral anterior protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the ventral region of the anterior protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur is_a: FBbt:00001335 ! anterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005876 name: dorsal central protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the dorsal region of the central protocerebrum." [FlyBase:FBrf0161021] subset: cur ! cur is_a: FBbt:00001343 ! central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005877 name: ventral central protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the ventral region of the central protocerebrum." [FlyBase:FBrf0161021] subset: cur ! cur is_a: FBbt:00001343 ! central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005878 name: dorsal posterior protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the dorsal region of the posterior protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur is_a: FBbt:00001347 ! posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005879 name: Pcd9 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 9 of the central dorsal protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005880 name: Pcd10 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 10 of the central dorsal protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005881 name: Pcd11 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 11 of the central dorsal protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005882 name: Fell hairs (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00002928 ! embryonic/larval abdominal 8 sensillum (Drosophila) relationship: part_of FBbt:00000425 ! stigmatophore (Drosophila) [Term] id: FBbt:00005883 name: eye photoreceptor cell stalk (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007397 def: "Apically located membrane that supports the eye photoreceptor rhabdomere." [FlyBase:FBrf0167536] subset: cur ! cur synonym: "photoreceptor stalk" BROAD [] is_a: UBERON:0000470 ! cell part relationship: part_of FBbt:00006009 ! eye photoreceptor cell (Drosophila) [Term] id: FBbt:00005884 name: photoreceptor cell R1 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R1 (FBbt:00004213)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004213 ! photoreceptor cell R1 (Drosophila) [Term] id: FBbt:00005885 name: photoreceptor cell R2 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R2 (FBbt:00004215)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004215 ! photoreceptor cell R2 (Drosophila) [Term] id: FBbt:00005886 name: photoreceptor cell R3 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R3 (FBbt:00004217)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004217 ! photoreceptor cell R3 (Drosophila) [Term] id: FBbt:00005887 name: photoreceptor cell R4 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R4 (FBbt:00004219)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004219 ! photoreceptor cell R4 (Drosophila) [Term] id: FBbt:00005888 name: photoreceptor cell R5 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R5 (FBbt:00004221)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004221 ! photoreceptor cell R5 (Drosophila) [Term] id: FBbt:00005889 name: photoreceptor cell R6 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R6 (FBbt:00004223)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004223 ! photoreceptor cell R6 (Drosophila) [Term] id: FBbt:00005890 name: photoreceptor cell R7 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R7 (FBbt:00004225)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004225 ! photoreceptor cell R7 (Drosophila) [Term] id: FBbt:00005891 name: photoreceptor cell R8 stalk (Drosophila) namespace: fly_anatomy.ontology def: "Any eye photoreceptor cell stalk (FBbt:00005883) that is part of some photoreceptor cell R8 (FBbt:00004227)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00005883 ! eye photoreceptor cell stalk (Drosophila) relationship: part_of FBbt:00004227 ! photoreceptor cell R8 (Drosophila) [Term] id: FBbt:00005892 name: adult peripheral nervous system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "adult PNS" RELATED [] is_a: UBERON:0000010 ! peripheral nervous system relationship: part_of FBbt:00003559 ! adult nervous system (Drosophila) [Term] id: FBbt:00005893 name: embryonic/larval peripheral nervous system (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "larval peripheral nervous system" EXACT [] is_a: UBERON:0000010 ! peripheral nervous system relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00005894 name: Pcv2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the central ventral protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005895 name: Pcv3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the central ventral protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005896 name: Pcv4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the central ventral protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005897 name: dorsal commissure (Drosophila) namespace: fly_anatomy.ontology comment: Term from AJ & VH. Why dorsal - given location of deuterocerebrum? subset: cur ! cur is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003998 ! deuterocerebral commissural tract (Drosophila) [Term] id: FBbt:00005898 name: ventral lobula cluster (Drosophila) namespace: fly_anatomy.ontology comment: This term may soon be obsolete. It has not been used in curation and is little used in the literature (although see FBrf0127108). subset: cur ! cur synonym: "VLC" RELATED [] is_a: UBERON:0001062 ! anatomical entity [Term] id: FBbt:00005899 name: dorsal cluster neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0156020] subset: cur ! cur synonym: "DC" RELATED [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00005900 name: ventral brain cluster neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "VBC" RELATED [] is_a: CL:0000099 ! interneuron relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00005901 name: CL fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Central-most Fas2-immunopositive (FBgn0000635) fascicle of the lateral fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "C4" RELATED [] synonym: "CL tract" EXACT [] synonym: "centrolateral fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00015899 ! lateral longitudinal fascicle (Drosophila) [Term] id: FBbt:00005902 name: VL fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most Fas2-immunopositive (FBgn0000635) fascicle of the lateral fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "V fascicle" EXACT [] synonym: "VL tract" EXACT [] synonym: "ventrolateral fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00015899 ! lateral longitudinal fascicle (Drosophila) [Term] id: FBbt:00005903 name: intermediate longitudinal fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Central-most of the Fas2-immunopositive (FBgn0000635) fascicles of the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "central longitudinal fascicle" RELATED [] synonym: "second Fas2 fascicle" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00001103 ! longitudinal connective (Drosophila) [Term] id: FBbt:00005904 name: DI fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most Fas2-immunopositive (FBgn0000635) fascicle of the intermediate/central fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "D1 fascicle" EXACT [] synonym: "DI tract" EXACT [] synonym: "dorsointermediate fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00005903 ! intermediate longitudinal fascicle (Drosophila) [Term] id: FBbt:00005905 name: C1 fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Second dorsal-most Fas2-immunopositive (FBgn0000635) fascicle of the intermediate/central fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "C1 tract" EXACT [] synonym: "CI 1 fascicle" EXACT [FlyBase:FBrf0160715] synonym: "centrointermediate 1 fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00005903 ! intermediate longitudinal fascicle (Drosophila) [Term] id: FBbt:00005906 name: C2 fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Third dorsal-most Fas2-immunopositive (FBgn0000635) fascicle of the intermediate/central fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "C2 tract" EXACT [] synonym: "CI 2 fascicle" EXACT [FlyBase:FBrf0160715] synonym: "centrointermediate 2 fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00005903 ! intermediate longitudinal fascicle (Drosophila) [Term] id: FBbt:00005907 name: C3 fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most Fas2-immunopositive (FBgn0000635) fascicle of the intermediate/central fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "C3 tract" EXACT [] synonym: "CI 3 fascicle" EXACT [FlyBase:FBrf0160715] synonym: "centrointermediate 3 fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00005903 ! intermediate longitudinal fascicle (Drosophila) [Term] id: FBbt:00005908 name: medial longitudinal fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most of the Fas2-immunopositive (FBgn0000635) fascicles of the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "first Fas2 fascicle" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00001103 ! longitudinal connective (Drosophila) [Term] id: FBbt:00005909 name: DM fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most Fas2-immunopositive (FBgn0000635) fascicle of the medial fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "DM tract" EXACT [] synonym: "DMT" RELATED [] synonym: "M1" RELATED [] synonym: "dorsomedial 1 fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00005908 ! medial longitudinal fascicle (Drosophila) [Term] id: FBbt:00005910 name: VM fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most Fas2-immunopositive (FBgn0000635) fascicle of the medial fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "M2 fascicle" EXACT [] synonym: "VM tract" EXACT [] synonym: "VMT" EXACT [] synonym: "ventromedial fascicle" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00005908 ! medial longitudinal fascicle (Drosophila) [Term] id: FBbt:00005911 name: male abdominal tergite 8 (Drosophila) namespace: fly_anatomy.ontology def: "Develops from female repressed primordium." [FlyBase:FBrf0141451] subset: cur ! cur is_a: FBbt:00004797 ! abdominal tergite 8 (Drosophila) relationship: develops_from FBbt:00001788 ! male repressed primordium (Drosophila) [Term] id: FBbt:00005912 name: short arista lateral (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005913 ! arista lateral (Drosophila) [Term] id: FBbt:00005913 name: arista lateral (Drosophila) namespace: fly_anatomy.ontology def: "A bristle-like, non-innervated outgrowth of the arista. Each lateral is formed from the outgrowth of a single polyploid central core cell." [FlyBase:FBrf0137012] subset: cur ! cur is_a: FBbt:00004979 ! trichome (Drosophila) relationship: part_of FBbt:00004519 ! arista (Drosophila) [Term] id: FBbt:00005914 name: arista central core (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0137012] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004519 ! arista (Drosophila) [Term] id: FBbt:00005915 name: long arista lateral (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005913 ! arista lateral (Drosophila) [Term] id: FBbt:00005916 name: head mesoderm derived embryonic hemocyte (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005700 ! embryonic hemocyte (Drosophila) relationship: develops_from CL:0000385 ! prohemocyte (sensu Nematoda and Protostomia) [Term] id: FBbt:00005917 name: lymph gland derived hemocyte (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001684 ! embryonic/larval hemocyte (Drosophila) relationship: develops_from FBbt:00001668 ! embryonic/larval lymph gland (Drosophila) [Term] id: FBbt:00005918 name: thermosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that functions in (some) detection of temperature stimulus involved in thermoception (GO:0050960)." [FBC:auto_generated_definition, FlyBase:FBrf0159248] subset: cur ! cur is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00005919 name: mechanosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that functions in (some) detection of mechanical stimulus involved in sensory perception (GO:0050974)." [FBC:auto_generated_definition] subset: cur ! cur is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00005920 name: air sac tracheoblast of dorsal air sac primordium (Drosophila) namespace: fly_anatomy.ontology def: "Air sac tracheoblast that is part of the dorsal air sac primordium. These cell originate as a clump of cells on the surface of the wing disc that have budded from the from the tracheal branch that adheres to the wing disc." [FlyBase:FBrf0151893] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "air sac tracheoblast of dorsal mesothoracic disc" RELATED [] is_a: FBbt:00007478 ! air sac tracheoblast (Drosophila) relationship: develops_from FBbt:00000256 ! transverse connective 2 (Drosophila) relationship: part_of FBbt:00007135 ! dorsal air sac primordium (Drosophila) [Term] id: FBbt:00005921 name: ventral posterior protocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the ventral region of the posterior protocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161021] subset: cur ! cur is_a: FBbt:00001347 ! posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005922 name: chemosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that functions in (some) detection of chemical stimulus involved in sensory perception (GO:0050907)." [FBC:auto_generated_definition] subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: CL:0000101 ! sensory neuron [Term] id: FBbt:00005923 name: hygrosensitive neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00005161 ! hygrosensitive sensory organ (Drosophila) [Term] id: FBbt:00005924 name: Ppd1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the posterior dorsal protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005925 name: Ppv1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the posterior ventral protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005921 ! ventral posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005926 name: olfactory receptor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that functions in (some) detection of chemical stimulus involved in sensory perception of smell (GO:0050911)." [FBC:auto_generated_definition] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "ORN" EXACT [] synonym: "OSN" EXACT [FlyBase:FBrf0191451] synonym: "odorant receptor neuron" EXACT [] synonym: "olfactory neuron" BROAD [] synonym: "olfactory sensory neuron" EXACT [FlyBase:FBrf0191451] is_a: FBbt:00005922 ! chemosensory neuron (Drosophila) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00005927 name: gustatory receptor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition, FlyBase:FBrf0179479, FlyBase:FBrf0208984] subset: cur ! cur subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "GRN" EXACT [] synonym: "gustatory neuron" BROAD [] synonym: "gustatory sensory neuron" EXACT [] is_a: FBbt:00005922 ! chemosensory neuron (Drosophila) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00005928 name: Ppv2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the posterior ventral protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005921 ! ventral posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005929 name: Ppv3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the posterior ventral protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005921 ! ventral posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005930 name: Ppd4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the posterior dorsal protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005931 name: Ppd5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005932 name: Ppd6 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 6 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005933 name: Ppd7 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 7 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005934 name: Ppd8 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 8 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005935 name: Ppd9 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 9 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005936 name: Ppd10 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 10 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005937 name: Ppd11 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 11 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005938 name: Ppd12 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 12 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005939 name: Ppd13 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 13 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005940 name: Ppd14 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 14 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005941 name: Ppd15 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 15 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005942 name: Ppd16 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 16 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005943 name: Ppd17 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 17 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005944 name: Ppd18 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 18 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005945 name: Ppd19 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 19 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005946 name: Ppd20 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 20 of the dorsal posterior protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005878 ! dorsal posterior protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005947 name: Dd1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005948 name: Dd2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005949 name: Dd3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005950 name: Dd4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005951 name: Dd5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005952 name: Dd6 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 6 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005953 name: Dd7 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 7 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005954 name: Dd8 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 8 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005955 name: Dd9 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 9 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005956 name: Dd10 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 10 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005957 name: Dd11 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 11 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005958 name: Dd12 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 12 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005959 name: Dd13 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 13 of the dorsal deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001354 ! dorsal deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005960 name: Dv1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005961 name: Dv2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005962 name: Dv3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005963 name: Dv4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005964 name: Dv5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005965 name: Dv6 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 6 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005966 name: Dv7 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 7 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005967 name: Dv8 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 8 of the ventral deuterocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00001356 ! ventral deuterocerebral neuroblast (Drosophila) [Term] id: FBbt:00005968 name: dorsal tritocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the dorsal region of the tritocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161019, FlyBase:FBrf0161021] subset: cur ! cur synonym: "Td neuroblast" RELATED [] is_a: FBbt:00001363 ! tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005969 name: ventral tritocerebral neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast located in the ventral region of the tritocerebrum." [FlyBase:FBrf0089217, FlyBase:FBrf0161019, FlyBase:FBrf0161021] subset: cur ! cur synonym: "Tv neuroblast" RELATED [] is_a: FBbt:00001363 ! tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005970 name: Td1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005971 name: Td2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005972 name: Td3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005973 name: Td4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005974 name: Td5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005975 name: Td6 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 6 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005976 name: Td7 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 7 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005977 name: Td8 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 8 of the dorsal tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005968 ! dorsal tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005978 name: Tv2 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 2 of the ventral tritocerebrum." [FlyBase:FBrf0161019, FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005969 ! ventral tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005979 name: VI fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most Fas2-immunopositive (FBgn0000635) fascicle of the intermediate fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0160715] subset: cur ! cur synonym: "VI tract" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00001103 ! longitudinal connective (Drosophila) [Term] id: FBbt:00005980 name: Tv3 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 3 of the ventral tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005969 ! ventral tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005981 name: Tv4 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 4 of the ventral tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005969 ! ventral tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005982 name: Tv5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the ventral tritocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005969 ! ventral tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00005983 name: transverse projection (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001103 ! longitudinal connective (Drosophila) [Term] id: FBbt:00005984 name: TP1 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005983 ! transverse projection (Drosophila) [Term] id: FBbt:00005985 name: TP2 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005983 ! transverse projection (Drosophila) [Term] id: FBbt:00005986 name: TP3 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005983 ! transverse projection (Drosophila) [Term] id: FBbt:00005987 name: TP4 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005983 ! transverse projection (Drosophila) [Term] id: FBbt:00005988 name: TP5 (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00005983 ! transverse projection (Drosophila) [Term] id: FBbt:00005989 name: Pcd12 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 12 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005990 name: Pcd13 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 13 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005991 name: Pcd14 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 14 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005992 name: Pcd15 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 15 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005993 name: Pcd16 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 16 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005994 name: Pcd17 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 17 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005995 name: Pcd18 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 18 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005996 name: Pcd19 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 19 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005997 name: Pcd20 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 20 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005998 name: Pcd21 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 21 of the dorsal central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005876 ! dorsal central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00005999 name: ventral central deuterocerebral neuroblast namespace: fly_anatomy.ontology is_obsolete: true subset: cur ! cur synonym: "ventral central deutocerebral neuroblast" EXACT [] [Term] id: FBbt:00006000 name: Pcv1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the ventral central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00006001 name: somatic mesoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00026000 ! trunk mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000129 ! somatic mesoderm (Drosophila) [Term] id: FBbt:00006002 name: Pcv5 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 5 of the ventral central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00006003 name: Pcv6 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 6 of the ventral central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00006004 name: Pcv7 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 7 of the ventral central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00006005 name: Pcv8 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 8 of the ventral central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00006006 name: Pcv9 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 9 of the ventral central protocerebrum." [FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005877 ! ventral central protocerebral neuroblast (Drosophila) [Term] id: FBbt:00006007 name: outer photoreceptor cell (Drosophila) namespace: fly_anatomy.ontology def: "An eye photoreceptor cell whose rhabdomere is part of the outer trapezoid of rhabdomeres of each ommatidium. There are six of these per ommatidium. Each has a single axon that projects along a single lamina optic cartridge within which it makes extensive synaptic connections before terminating in the proximal lamina. This axon is presynaptic to lamina monopolar cells L1, L2 and L3 (at tetrad synapses), but also postsynaptic at (dyad) feedback synapses from L2 and L4 (Meinertzhagen and O'Neil, 1991)." [FlyBase:FBrf0054529, FlyBase:FBrf0064798] subset: cur ! cur synonym: "photoreceptor cell R1-6" EXACT [] is_a: FBbt:00006009 ! eye photoreceptor cell (Drosophila) [Term] id: FBbt:00006008 name: inner photoreceptor cell (Drosophila) namespace: fly_anatomy.ontology def: "Eye photoreceptor cell whose rhabdomere is located in the centre of each ommatidium." [FlyBase:FBrf0064798] subset: cur ! cur is_a: FBbt:00006009 ! eye photoreceptor cell (Drosophila) [Term] id: FBbt:00006009 name: eye photoreceptor cell (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003709 def: "Photoreceptor cell that forms the core of each ommatidium in the adult eye. Eight of these photoreceptors are arranged in each ommatidial core, bundled like the staves of a barrel. Each has a photosensitive rhabdomere that projects into the barrel cavity and adjacent supporting membrane, the stalk (Wolff and Ready, 1993). Each extends an axon into the optic lobe. Activation of the photoreceptor by light results in depolarization and in histamine release at the synapses of these axons (Sarthy, 1991)." [FlyBase:FBrf0054495, FlyBase:FBrf0064798] comment: Note - eyelet photoreceptors are NOT sub-types. subset: cur ! cur synonym: "lamina receptor cell" EXACT [] is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00007251 ! rhabdomeric photoreceptor cell (Drosophila) is_a: FBbt:00007367 ! histaminergic neuron (Drosophila) relationship: part_of UBERON:0000971 ! ommatidium [Term] id: FBbt:00006010 name: gonadal somatic stem cell (Drosophila) namespace: fly_anatomy.ontology def: "Any somatic stem cell (FBbt:00007344) that is part of some gonad (FBbt:00004858)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007344 ! somatic stem cell (Drosophila) relationship: part_of UBERON:0000991 ! gonad [Term] id: FBbt:00006011 name: pharate adult (Drosophila) namespace: fly_anatomy.ontology def: "The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion." [FlyBase:FBrf0049147] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur is_a: UBERON:0000468 ! multi-cellular organism relationship: develops_from UBERON:0003143 ! pupa [Term] id: FBbt:00006012 name: stage A3 adult (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005375 comment: DEPRECATION WARNING\! This term is deprecated and will be obsoleted by the end of 2009 at the latest. Further use is discouraged. Instead, the whole organism at this stage should be referred to by combining the anatomy term \"organism\" with the appropriate term from the stage ontology. synonym: "stage III adult" RELATED [] is_a: UBERON:0007023 ! adult organism relationship: develops_from FBbt:00005371 ! stage A2 adult (Drosophila) [Term] id: FBbt:00006013 name: midgut longitudinal visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00017008 ! longitudinal visceral muscle primordium (Drosophila) [Term] id: FBbt:00006014 name: embryonic/larval midgut longitudinal visceral muscle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001035 ! embryonic/larval visceral muscle (Drosophila) relationship: develops_from FBbt:00006013 ! midgut longitudinal visceral muscle primordium (Drosophila) [Term] id: FBbt:00006015 name: wing blade (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from FBbt:00006029 ! wing pouch (Drosophila) relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00006016 name: peritracheal cell (Drosophila) namespace: fly_anatomy.ontology def: "Neuropeptide-expressing cell located at the base of the trachea (two per segment)." [FlyBase:FBrf0100681] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: FBbt:00006017 name: embryonic/larval peritracheal cell (Drosophila) namespace: fly_anatomy.ontology def: "Neuropeptide-expressing cell located at the base of the larval trachea (two per segment) that secretes myomodulin just prior to ecdysis." [FlyBase:FBrf0100681] subset: cur ! cur synonym: "larval peritracheal cell" EXACT [] is_a: FBbt:00006016 ! peritracheal cell (Drosophila) relationship: part_of FBbt:00000185 ! embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:00006018 name: adult peritracheal cell (Drosophila) namespace: fly_anatomy.ontology def: "Neuropeptide-expressing cell located at the base of the adult trachea (two per segment)." [FlyBase:FBrf0100681] subset: cur ! cur is_a: FBbt:00006016 ! peritracheal cell (Drosophila) relationship: part_of FBbt:00003037 ! adult tracheal system (Drosophila) [Term] id: FBbt:00006019 name: Tv neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuro-secretory (neuro-endocrine) neuron which projects its axon out of the ventral nerve cord at the dorsal midline and innervates the neurohemal organ. One Tv neuron is present (in a lateral 'ap' cluster) on each side of the ventral nerve cord in each thoracic hemisegment of the larva." [FlyBase:FBrf0106026, FlyBase:FBrf0167500] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00007436 ! endocrine neuron (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00006020 name: lch5 cap attachment cell (Drosophila) namespace: fly_anatomy.ontology def: "A cell that anchors the scolopidial dendritic cap cells of abdominal lateral pentascolopidial chordotonal organ lch5 to the cuticle. There are two of these per chordotonal organ of this type." [FlyBase:FBrf0180120] subset: cur ! cur synonym: "CA" RELATED [] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00006021 name: lch5 ligament attachment cell (Drosophila) namespace: fly_anatomy.ontology def: "A cell that anchors the scolopidial ligament cell of abdominal lateral pentascolopidial chordotonal organ lch5 to the cuticle." [FlyBase:FBrf0180120] subset: cur ! cur synonym: "LA" RELATED [] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00002831 ! abdominal lateral pentascolopidial chordotonal organ lch5 (Drosophila) [Term] id: FBbt:00006022 name: external sensory organ precursor cell IIIb (Drosophila) namespace: fly_anatomy.ontology def: "Daughter of pIIb; born during pupal stage; sibling of eo glial cell." [FlyBase:FBrf0111371] comment: The reference paper (Gho et al., 1999) provides evidence for the existence of this intermediate stage between pIIb and the birth of the eo neuron in the wing mechanoreceptor development. There may be some question as to whether this can be generalized to all external sensory organs, but in the absence of evidence that the development of these organs is distinct I have applied this stage to all external sensory organ development. ds060308. subset: cur ! cur synonym: "pIIIb" RELATED [] is_a: FBbt:00005164 ! external sensory organ precursor cell (Drosophila) relationship: develops_from FBbt:00005167 ! external sensory organ precursor cell IIb (Drosophila) [Term] id: FBbt:00006023 name: eo glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell associated with eo neuron. Daughter of pIIb; sibling of pIIIb." [FlyBase:FBrf0111371] comment: Note - the term 'sheath cell' is problematic as it is sometimes used to refer to the thecogen cell and sometimes to the eo glial cell. ds060308. subset: cur ! cur synonym: "sheath cell" BROAD [] is_a: FBbt:00001320 ! PNS glial cell (Drosophila) relationship: develops_from FBbt:00005167 ! external sensory organ precursor cell IIb (Drosophila) relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: FBbt:00006024 name: dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body is located most dorsally in the dorsal group of dendritic arborization neurons. It has long primary and secondary branches marked by spiked protrusions (1-20um) along most of its length (Grueber et al., 2002)." [FlyBase:FBrf0148943, FlyBase:FBrf0148966, FlyBase:FBrf0183734, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#ddaF, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature.html] comment: There is some confusion in the literature between ddaF and ddaD (see Orgogozo and Grueber, 2005, for details). The nomenclature used here is according to Grueber et al., 2002. However other papers (notably Sweeney et al., 2002) refer to Grueber's ddaD as ddaF and vice-versa. subset: cur ! cur synonym: "ddaD" BROAD [FlyBase:FBrf0148943] is_a: FBbt:00002024 ! dorsal multidendritic neuron (Drosophila) is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) relationship: part_of FBbt:00007398 ! embryonic/larval T2/3 dorsal sensory cluster (Drosophila) [Term] id: FBbt:00006025 name: abdominal dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00006024 ! dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00007274 ! class III dendritic arborizing neuron (Drosophila) [Term] id: FBbt:00006026 name: abdominal 1 dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaF (FBbt:00006025) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00006025 ! abdominal dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00006027 name: metathoracic dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00002153 ! metathoracic dorsal/lateral multidendritic neuron (Drosophila) is_a: FBbt:00006024 ! dorsal multidendritic neuron ddaF (Drosophila) [Term] id: FBbt:00006028 name: EH neurosecretory neuron (Drosophila) namespace: fly_anatomy.ontology def: "A neuron of the larval brain that expresses eclosion hormone. A single pair of these neurons is present per larva. Their processes extend the entire length of the central nervous system and also to the corpora cardiaca portion of the ring gland via the nervus corporis cardiaci." [FlyBase:FBrf0058431, FlyBase:FBrf0098847, FlyBase:FBrf0134726] subset: cur ! cur synonym: "EH neuron" EXACT [] synonym: "Eclosion hormone neurosecretory neuron" EXACT [] synonym: "VM neuron" EXACT [FlyBase:FBrf0058431, FlyBase:FBrf0134726] synonym: "ventromedial neuron" EXACT [FlyBase:FBrf0058431, FlyBase:FBrf0134726] is_a: FBbt:00007436 ! endocrine neuron (Drosophila) [Term] id: FBbt:00006029 name: wing pouch (Drosophila) namespace: fly_anatomy.ontology def: "Region of dorsal mesothoracic disc that will develop into the wing blade. Its boundary is delimited by folds in the third instar disc epithelium. The cells in this region can also be distinguished from surrounding cells in the third instar disc by their basal accumulation of lipid granules. The wing pouch is bisected by the anterior-posterior compartment boundary of the disc." [FBC:DOS, FlyBase:FBrf0027793, FlyBase:FBrf0064790] subset: cur ! cur synonym: "wing primordium" EXACT [] is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00001778 ! wing disc (Drosophila) [Term] id: FBbt:00006030 name: somatic cell of ovary (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00004893 ! ovariole (Drosophila) [Term] id: FBbt:00006031 name: somatic cell of testis (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of UBERON:0000473 ! testis [Term] id: FBbt:00006032 name: mesothoracic tergum primordium (Drosophila) namespace: fly_anatomy.ontology def: "Region of the dorsal mesothoracic disc that will develop into the mesothoracic tergum." [FBC:DOS, FlyBase:FBrf0027793] subset: cur ! cur is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of FBbt:00001778 ! wing disc (Drosophila) [Term] id: FBbt:00006033 name: wing hinge primordium (Drosophila) namespace: fly_anatomy.ontology def: "Region of dorsal mesothoracic disc that will develop into the wing blade. Its boundary is delimited by folds in the third instar disc epithelium." [FBC:DOS, FlyBase:FBrf0027793] subset: cur ! cur is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of FBbt:00001778 ! wing disc (Drosophila) [Term] id: FBbt:00006034 name: primordium of ventral pleura (Drosophila) namespace: fly_anatomy.ontology def: "Part of the wing disc ventral to the wing pouch that is the precursor of the ventral pleura of the thorax." [FBC:DOS, FlyBase:FBrf0027793] comment: Need to reconcile terminology for ventral pleura with current terminology used for adult ventral thorax. subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00001778 ! wing disc (Drosophila) [Term] id: FBbt:00006035 name: ganglion mother cell GMC7-1a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell of neuroblast NB7-1." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/71%20description.html] comment: In the wildtype neuroblast 7-1 lineage, GMC7-1a and GMC7-1b and their progeny are hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent GMCs do not express hb (Isshiki et al., 2001). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ganglion mother cell GMC 7-1a" EXACT [] is_a: FBbt:00001433 ! embryonic ganglion mother cell (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00006036 name: ganglion mother cell GMC7-1b (Drosophila) namespace: fly_anatomy.ontology def: "Second born ganglion mother cell of neuroblast NB7-1." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/71%20description.html] comment: In the wildtype neuroblast 7-1 lineage, GMC7-1a and GMC7-1b and their progeny are hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent GMCs do not express hb (Isshiki et al., 2001). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ganglion mother cell GMC 7-1b" EXACT [] is_a: FBbt:00001433 ! embryonic ganglion mother cell (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00006037 name: ganglion mother cell GMC7-1c (Drosophila) namespace: fly_anatomy.ontology def: "Third born ganglion mother cell of neuroblast NB7-1." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/71%20description.html] comment: In the wildtype neuroblast 7-1 lineage, GMC7-1a and GMC7-1b and their progeny are hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent GMCs do not express hb (FBgn0001325). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ganglion mother cell GMC 7-1c" EXACT [] is_a: FBbt:00001433 ! embryonic ganglion mother cell (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00006038 name: ganglion mother cell GMC7-1d (Drosophila) namespace: fly_anatomy.ontology def: "Fourth born ganglion mother cell of neuroblast NB7-1." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/71%20description.html] comment: In the wildtype neuroblast 7-1 lineage, GMC7-1a and GMC7-1b and their progeny are hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent GMCs do not express hb (Isshiki et al., 2001). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ganglion mother cell GMC 7-1d" EXACT [] is_a: FBbt:00001433 ! embryonic ganglion mother cell (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00006039 name: ganglion mother cell GMC7-1e (Drosophila) namespace: fly_anatomy.ontology def: "Fifth born ganglion mother cell of neuroblast NB7-1." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/71%20description.html] comment: In the wildtype neuroblast 7-1 lineage, GMC7-1a and GMC7-1b and their progeny are hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent GMCs do not express hb (Isshiki et al., 2001). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ganglion mother cell GMC 7-1e" EXACT [] is_a: FBbt:00001433 ! embryonic ganglion mother cell (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00006040 name: ganglion mother cell GMC7-1f (Drosophila) namespace: fly_anatomy.ontology def: "Sixth born ganglion mother cell of neuroblast NB7-1." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/71%20description.html] comment: In the wildtype neuroblast 7-1 lineage, GMC7-1a and GMC7-1b and their progeny are hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent GMCs do not express hb (Isshiki et al., 2001). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ganglion mother cell GMC 7-1f" EXACT [] is_a: FBbt:00001433 ! embryonic ganglion mother cell (Drosophila) relationship: develops_from FBbt:00001380 ! neuroblast NB7-1 (Drosophila) relationship: part_of FBbt:00005554 ! ventral nerve cord primordium (Drosophila) [Term] id: FBbt:00006041 name: U4 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from the fourth ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0190540] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001564 ! U neuron (Drosophila) relationship: develops_from FBbt:00006038 ! ganglion mother cell GMC7-1d (Drosophila) [Term] id: FBbt:00006042 name: U4sib neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sibling neuron to the U4 neuron developing from the fourth ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0102831, FlyBase:FBrf0162056] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001568 ! Usib neuron (Drosophila) relationship: develops_from FBbt:00006038 ! ganglion mother cell GMC7-1d (Drosophila) [Term] id: FBbt:00006043 name: U5 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron developing from the fifth ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0190540] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001564 ! U neuron (Drosophila) relationship: develops_from FBbt:00006039 ! ganglion mother cell GMC7-1e (Drosophila) [Term] id: FBbt:00006044 name: U5sib neuron (Drosophila) namespace: fly_anatomy.ontology def: "Sibling neuron to the U5 neuron developing from the fifth ganglion mother cell that differentiates from neuroblast NB7-1." [FlyBase:FBrf0102831, FlyBase:FBrf0162056] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00001568 ! Usib neuron (Drosophila) relationship: develops_from FBbt:00006039 ! ganglion mother cell GMC7-1e (Drosophila) [Term] id: FBbt:00006045 name: antennal nerve (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "AN" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00006046 name: Tv1 neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast 1 of the ventral tritocerebrum." [FlyBase:FBrf0161019, FlyBase:FBrf0161021] comment: Numbering also indicates relative position: we follow the nomenclature of Urbach et al., (2003), in which neuroblasts are numbered from anterior-to-posterior and ventral-to-dorsal (so that numbers reflect relative positions along the dorsoventral axis). Figure 1 of Urbach et al., 2003, provides a survey of the spatial organization of the embryonic head and brain neuroblasts of a stage 11 embryo. subset: cur ! cur is_a: FBbt:00005969 ! ventral tritocerebral neuroblast (Drosophila) [Term] id: FBbt:00006047 name: Tvb neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron which is located adjacent to each Tv neuron in each thoracic hemisegment of the larval ventral nerve cord." [FlyBase:FBrf0195184] subset: cur ! cur is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00006048 name: pacemaker neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron that supports clock-gene oscillations under light:dark cycles or constant conditions, and participates in control of the diurnal rhythm of the organism." [FlyBase:FBrf0093121, FlyBase:FBrf0105254, FlyBase:FBrf0195358] comment: Molecular oscillation of Period (FBgn0003068) and Timeless (FBgn0014396) expression considered to be central to molecular mechanism of pacemaking, and key criteria defining a pacemaker cell. [FlyBase:FBrf0105254].subset: cur. synonym: "clock neuron" RELATED [] is_a: CL:0000540 ! neuron [Term] id: FBbt:00006049 name: escort cell (Drosophila) namespace: fly_anatomy.ontology def: "Somatic cell type with squamous morphology found in regions 1 and 2a of the germarium. These cells send out thin cytoplasmic processes which envelop cystoblasts and cysts for several days prior to follicle cell formation. They move posteriorly with developing cystoblasts but do not cross the 2a/2b boundary in the germarium, instead undergoing apoptosis when they reach it." [FlyBase:FBrf0190200] comment: It seems clear that escort cells are inner germarium sheath cells, but it is not clear whether all inner germarium sheath cells are escort cells (Decotto and Spradling, 2005). subset: RD ! terms for rd test ontology subset: cur ! cur synonym: "inner germarium sheath cell" BROAD [FlyBase:FBrf0190200] is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: develops_from FBbt:00006050 ! escort stem cell (Drosophila) relationship: part_of FBbt:00004866 ! germarium (Drosophila) [Term] id: FBbt:00006050 name: escort stem cell (Drosophila) namespace: fly_anatomy.ontology def: "A type of somatic stem cell with a thin, elongate morphology. 4-6 of these cells are present in each germarium where they surround and extensively contact adjacent female germline stem cells." [FlyBase:FBrf0190200] subset: RD ! terms for rd test ontology subset: cur ! cur is_a: FBbt:00006010 ! gonadal somatic stem cell (Drosophila) relationship: part_of FBbt:00004867 ! germarium region 1 (Drosophila) [Term] id: FBbt:00007002 name: cell (Drosophila) namespace: fly_anatomy.ontology def: "Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:MAH] subset: FB_gloss ! terms for FlyBase glossary page subset: cur ! cur subset: larval_OF ! larval olfactory system xref: CARO:0000013 xref: GO:0005623 is_a: UBERON:0000061 ! anatomical structure disjoint_from: FBbt:00100313 ! multicellular structure (Drosophila) [Term] id: FBbt:00007007 name: embryonic hemocyte anlage (Drosophila) namespace: fly_anatomy.ontology def: "Anlage which is part of the head mesoderm and gives rise to embryonic hemocytes." [FlyBase:FBrf0162082, FlyBase:FBrf0190261] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00000127 ! head mesoderm (Drosophila) [Term] id: FBbt:00007008 name: somatic precursor cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) is_a: UBERON:0005423 ! developing anatomical structure [Term] id: FBbt:00007014 name: stem cell (Drosophila) namespace: fly_anatomy.ontology def: "Undifferentiated cell which retains its identity while budding off cells which differentiate." [FBC:DOS] subset: cur ! cur is_a: FBbt:00007002 ! cell (Drosophila) [Term] id: FBbt:00007018 name: appendage segment (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000026 ! appendage [Term] id: FBbt:00007020 name: metatarsus of male prothoracic leg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004670 ! prothoracic metatarsus (Drosophila) relationship: part_of UBERON:0003101 ! male organism [Term] id: FBbt:00007021 name: embryonic/larval oenocyte precursor (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005706 def: "Embryonic/larval oenocyte precursors first become apparent during stage 11 when a small group of cells encircling each chordotonal organ precursor cell C1 become sickle shaped, making a double ringed 'whorl' around C1. Shortly afterwards (stage 11-12) these cells delaminate in two waves, (inner cells first) and migrate away to form an 'abdominal larval oenocyte group'." [FlyBase:FBrf0134578] subset: cur ! cur synonym: "embryonic oenocyte" RELATED [] synonym: "larval oenocyte precursor" EXACT [] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00007022 name: C4 chordotonal organ precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0092876] subset: cur ! cur is_a: FBbt:00005216 ! chordotonal organ precursor cell (Drosophila) [Term] id: FBbt:00007023 name: C2 chordotonal organ precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0092876] subset: cur ! cur is_a: FBbt:00005216 ! chordotonal organ precursor cell (Drosophila) [Term] id: FBbt:00007024 name: C3 chordotonal organ precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0092876] subset: cur ! cur is_a: FBbt:00005216 ! chordotonal organ precursor cell (Drosophila) [Term] id: FBbt:00007025 name: C5 chordotonal organ precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0092876] subset: cur ! cur is_a: FBbt:00005216 ! chordotonal organ precursor cell (Drosophila) [Term] id: FBbt:00007026 name: adult midgut epithelium (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial monolayer of endodermal origin, which lines the adult midgut and which is overlain by the peritrophic membrane." [FlyBase:FBrf0191249] subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00003138 ! adult midgut (Drosophila) [Term] id: FBbt:00007028 name: squamous epithelium (Drosophila) namespace: fly_anatomy.ontology def: "A type of epithelium that is made up of flattened cells which are arranged with their long axes in the plane of the epithelium." [ISBN:978-0-19-860917-9] subset: cur ! cur is_a: UBERON:0000483 ! epithelium [Term] id: FBbt:00007029 name: disc epithelium proper (Drosophila) namespace: fly_anatomy.ontology def: "A columnar epithelial monolayer with marked apical-basal polarity: the apical side faces the disc lumen, the basal side is underlain by a basal lamina. The anterior-posterior compartment boundary of the imaginal discs runs through the middle of this epithelium. Cells in this epithelium are coupled by gap junctions, but this coupling is much reduced across the anterior-posterior compartment boundary." [FlyBase:FBrf0064790] subset: cur ! cur is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of UBERON:0000939 ! imaginal disc [Term] id: FBbt:00007030 name: oocyte associated follicular epithelium (Drosophila) namespace: fly_anatomy.ontology def: "A columnar epithelium which surrounds the oocyte except at the anterior where the oocyte contacts the nurse cells. The basal side of this epithelium is associated with a basement membrane and faces away from the oocyte. The apical side faces the vitelline membrane, which separates this epithelium from the oocyte." [FlyBase:FBrf0015801] subset: RD ! terms for rd test ontology subset: cur ! cur is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of UBERON:0003199 ! egg chamber [Term] id: FBbt:00007031 name: nurse cell associated follicular epithelium (Drosophila) namespace: fly_anatomy.ontology def: "A squamous epithelium which covers the nurse cells from the start of stage 9 of oogenesis." [FlyBase:FBrf0015801, FlyBase:FBrf0059350] subset: RD ! terms for rd test ontology subset: cur ! cur is_a: FBbt:00007028 ! squamous epithelium (Drosophila) relationship: part_of UBERON:0003199 ! egg chamber [Term] id: FBbt:00007032 name: chitinous intima (Drosophila) namespace: fly_anatomy.ontology def: "Chitinous layer lining an internal epithelium." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0001001 ! chitin-based cuticle [Term] id: FBbt:00007033 name: chitinous intima of the adult foregut (Drosophila) namespace: fly_anatomy.ontology def: "The chitinous intima which lines the adult foregut." [FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007032 ! chitinous intima (Drosophila) relationship: part_of FBbt:00003127 ! adult foregut (Drosophila) [Term] id: FBbt:00007034 name: chitinous intima of the adult hindgut (Drosophila) namespace: fly_anatomy.ontology def: "Chitinous intima which lines the adult hingut." [FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007032 ! chitinous intima (Drosophila) relationship: part_of FBbt:00003143 ! adult hindgut (Drosophila) [Term] id: FBbt:00007035 name: anterior adult hindgut (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003143 ! adult hindgut (Drosophila) [Term] id: FBbt:00007036 name: adult posterior midgut epithelium (Drosophila) namespace: fly_anatomy.ontology def: "A columnar - cuboidal epithelial monolayer with a brush border consisting predominantly of large polyploid enterocytes tied together by smooth septate junctions. Scattered through this epithelium are clusters of diploid intestinal stem cells and occasional enteroendocrine cells." [FlyBase:FBrf0007735, FlyBase:FBrf0139657, FlyBase:FBrf0191251] subset: cur ! cur is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of FBbt:00007026 ! adult midgut epithelium (Drosophila) [Term] id: FBbt:00007037 name: enterocyte of posterior adult midgut epithelium (Drosophila) namespace: fly_anatomy.ontology def: "A large polyploid cuboidal or low-columnar epithelial cell with its nucleus in the middle and a mass of microvilli (brush border) on its apical surface. On its basal side, extensive infoldings of the plasma membrane form a labyrinth which fills the lower half of the cell. It is attached to adjacent enterocytes by smooth septate junctions." [FlyBase:FBrf0007735, FlyBase:FBrf0139657, FlyBase:FBrf0191251] subset: cur ! cur is_a: FBbt:00007042 ! enterocyte (Drosophila) relationship: part_of FBbt:00007036 ! adult posterior midgut epithelium (Drosophila) [Term] id: FBbt:00007038 name: enteroendocrine cell (Drosophila) namespace: fly_anatomy.ontology def: "Diploid endocrine cell which is part of the adult midgut epithelium." [FlyBase:FBrf0191251] subset: cur ! cur is_a: FBbt:00007294 ! endocrine cell (Drosophila) is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: part_of FBbt:00007036 ! adult posterior midgut epithelium (Drosophila) [Term] id: FBbt:00007039 name: intestinal stem cell (Drosophila) namespace: fly_anatomy.ontology def: "Wedge shaped diploid cell found in scattered clusters in the posterior midgut epithelium. The broad end of the wedge lies on the basement membrane and contains the nucleus. The tapering apex of the cell extends up towards the lumen." [FlyBase:FBrf0007735, FlyBase:FBrf0191251] subset: cur ! cur synonym: "ISC" RELATED [] is_a: FBbt:00007344 ! somatic stem cell (Drosophila) relationship: part_of FBbt:00007036 ! adult posterior midgut epithelium (Drosophila) [Term] id: FBbt:00007040 name: adult anterior midgut epithelium (Drosophila) namespace: fly_anatomy.ontology def: "Columnar epithelium with a clear apical border (i.e. no brush border)." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of FBbt:00007026 ! adult midgut epithelium (Drosophila) [Term] id: FBbt:00007041 name: chitinous intima of the cardial valve (Drosophila) namespace: fly_anatomy.ontology def: "Chitinous intima which covers the cardial valve. It forms irregular transverse ridges within the apical portion of the valve and terminates on the outer side of the valve near its base." [FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007032 ! chitinous intima (Drosophila) relationship: part_of FBbt:00007033 ! chitinous intima of the adult foregut (Drosophila) [Term] id: FBbt:00007042 name: enterocyte (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000066 ! epithelial cell [Term] id: FBbt:00007043 name: cardial valve muscle (Drosophila) namespace: fly_anatomy.ontology def: "Longitudinal muscle found between the folds of the foregut epithelium which make up the valve." [FlyBase:FBrf0007735] subset: cur ! cur is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of FBbt:00003140 ! cardial valve (Drosophila) [Term] id: FBbt:00007044 name: adult midgut pyloric epithelium (Drosophila) namespace: fly_anatomy.ontology def: "Squamous epithelium which forms the posterior-most region of the midgut epithelium, from the Malpighian tubules to the beginning of the hindgut." [FlyBase:FBrf0007735] subset: cur ! cur is_a: FBbt:00007028 ! squamous epithelium (Drosophila) relationship: part_of FBbt:00007026 ! adult midgut epithelium (Drosophila) [Term] id: FBbt:00007045 name: trunk ectoderm (Drosophila) namespace: fly_anatomy.ontology def: "The region of the ectoderm posterior to the cephalic furrow." [FBC:DOS] is_a: UBERON:0001062 ! anatomical entity relationship: part_of UBERON:0000924 ! ectoderm [Term] id: FBbt:00007046 name: dorsal ectoderm derivative (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00000112 ! dorsal ectoderm (Drosophila) [Term] id: FBbt:00007047 name: ventral sensory complex anlage (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00016007 ! ventral trunk epidermis primordium (Drosophila) [Term] id: FBbt:00007048 name: dorsal pharyngeal muscle anlage (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0007688 ! anlage [Term] id: FBbt:00007049 name: head visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00005519 ! visceral muscle primordium (Drosophila) [Term] id: FBbt:00007050 name: adult midbrain namespace: fly_anatomy.ontology def: "The supraesophageal ganglion, minus the optic lobes." [FBC:VH-AJ] is_obsolete: true consider: FBbt:00003626 ! supraesophageal ganglion (Drosophila) comment: Obsoleted to comply with the new BrainName standard, and because little used. synonym: "central brain" RELATED [] [Term] id: FBbt:00007051 name: procephalic glioblast (Drosophila) namespace: fly_anatomy.ontology def: "Any glioblast (FBbt:00005145) that is part of some central brain primordium (FBbt:00005542)." [FBC:auto_generated_definition] is_a: CL:0000030 ! glioblast is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00005542 ! central brain primordium (Drosophila) [Term] id: FBbt:00007052 name: ventral midline glioblast (Drosophila) namespace: fly_anatomy.ontology is_a: CL:0000030 ! glioblast is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00016014 ! ventral midline glia primordium (Drosophila) [Term] id: FBbt:00007053 name: lateral horn (Drosophila) namespace: fly_anatomy.ontology def: "Dorso-lateral most synaptic neuropil domain of the adult midbrain. This horn-like projection houses the terminals of various antennal lobe projection neurons. It is not separated from other neuropils by a glial sheath, but by the extent of arborization and synapsing of these antennal lobe projection neurons." [FBC:BrainName, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html] subset: BrainName ! BrainName project terms synonym: "LH" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: develops_from FBbt:00007064 ! dorsal centro-posterior lateral synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00007054 name: superior lateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00045031 def: "Lateral synaptic neuropil domain of the superior neuropils. It lies behind the anterior optic tubercle, in front of the mushroom body calyx and above the superior clamp and lateral horn. Its boundary with the anterior optic tubercle (AOTU) is demarcated by the extent of arborization of visual projection neurons within the AOTU and with the lateral horn by the extend of arborization of antennal lobe projection neurons." [FBC:BrainName, VFB_vol:00045031, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html] comment: Boundaries defined by BrainName (used to define this term) differ slightly from those defined for slpr in Otsuna and Ito, 2006. subset: BrainName ! BrainName project terms synonym: "SLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "adult superior lateral protocerebrum" RELATED [] synonym: "slpr" RELATED [FlyBase:FBrf0193607] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: develops_from FBbt:00007064 ! dorsal centro-posterior lateral synaptic neuropil domain (Drosophila) relationship: develops_from FBbt:00007065 ! dorso-anterior synaptic neuropil domain (Drosophila) relationship: develops_from FBbt:00007066 ! dorso-posterior synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) relationship: part_of FBbt:00045030 ! superior neuropils (Drosophila) [Term] id: FBbt:00007055 name: superior medial protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Medial synaptic neuropil domain of the superior neuropils that lies above the area flanked by the mushroom lobes, pedunculus, and calyx. It is separated from the pedunculus by the superior clamp. The fan-shaped body protrudes deeply into this neuropil, separating it into anterior and posterior regions." [FBC:BrainName, FBC:VH-AJ, VFB_vol:00007055, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem1.html] subset: BrainName ! BrainName project terms synonym: "SMP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "smpr" EXACT [FlyBase:FBrf0212889] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) relationship: part_of FBbt:00045030 ! superior neuropils (Drosophila) [Term] id: FBbt:00007056 name: adult inferior medial protocerebrum namespace: fly_anatomy.ontology def: "." [FBC:VH-AJ, FlyBase:FBrf0193607, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html] is_obsolete: true consider: FBbt:00040037 ! inferior neuropils (Drosophila) comment: Obsoleted in the processes of making the ontology consistent with BrainName. Mapping to BrainName domains is quite complicated. adult inferior lateral protocerebrum as defined by Otosuna and Ito (2006) overlaps BrainName regions: crepine; superior clamp; inferior clamp; superior intermediate protocerebrum; superior medial protocerebrum, bulb, antler (BrainName, 2011). [Term] id: FBbt:00007057 name: adult inferior lateral protocerebrum namespace: fly_anatomy.ontology def: "." [FBC:VH-AJ, FlyBase:FBrf0193607, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] is_obsolete: true consider: FBbt:00007054 ! superior lateral protocerebrum (Drosophila) consider: FBbt:00040048 ! superior clamp (Drosophila) comment: Obsoleted in the processes of making the ontology consistent with BrainName. Mapping to BrainName domains is quite complicated. adult inferior lateral protocerebrum as defined by Otosuna and Ito (2006) overlaps BrainName regions: superior clamp; superior lateral protocerebrum; a small parts of the posterior ventrolateral protocerebrum (PVLP) and the posteriorlateral protocerebrum (SLP) (BrainName, 2011). synonym: "ilpr" EXACT [FlyBase:FBrf0193607] [Term] id: FBbt:00007058 name: ventrolateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "A mass of synaptic neuropil domains in the anterior brain, between the antennal lobe and the optic lobe." [FBC:BrainName, FBC:VH-AJ, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem1.html] comment: Currently some uncertainty about whether this is truly protocerebral - may actually be part of deuterocerebrum (Strausfeld has characterized it as such). This should be clarified as a result of Volker Hartenstein's lineage mapping work. subset: BrainName ! BrainName project terms synonym: "VLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "ventro-lateral protocerebrum" EXACT [] synonym: "vlpr" EXACT [] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: develops_from FBbt:00007068 ! baso-posterior lateral synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00045021 ! ventrolateral neuropils (Drosophila) [Term] id: FBbt:00007059 name: optic tubercle (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil domain of the adult protocerebrum that receives extensive arborizations from visual projection neurons from the lobula and the medulla, projecting via the anterior optic tract. It protrudes from the anterior-most area of the ventro-lateral neuropils and is slightly detached from the ventro-lateral protocerebrum." [FBC:BrainName, VFB_vol:00007059, http://flybrain.neurobio.arizona.edu/Flybrain/html/module/1997/descdn/index.html] comment: Otsuna and Ito (2006) suggest that the optic tubercle may be divided into three regions according to the density of arborizations. The medial-most (optu1) and lateral-most (optu3) contain dense arborizations of the Lcn10 neurons, whilst the area between these regions (optu2) is essentially devoid of the lobula columnar neurons. subset: BrainName ! BrainName project terms synonym: "AOTU" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "OTU" EXACT [FBC:BrainName] synonym: "optic tubercle" EXACT [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) relationship: part_of FBbt:00045021 ! ventrolateral neuropils (Drosophila) [Term] id: FBbt:00007061 name: baso-posterior adult midbrain namespace: fly_anatomy.ontology def: "." [FBC:VH-JR] is_obsolete: true consider: FBbt:00003626 ! supraesophageal ganglion (Drosophila) comment: Obsoleted in the processes of making the ontology consistent with BrainName. This term was never properly defined, so no precise replacement term can be suggested. [Term] id: FBbt:00007063 name: baso-posterior medial compartment (Drosophila) namespace: fly_anatomy.ontology def: "One of a group of synaptic neuropil domains of the larval brain which are located ventral to the mushroom body and are grouped around the long axon tracts connecting the larval protocerebrum to the ventral nerve cord. This medially located compartment contacts the baso-anterior compartment (BA) posteriorly. The lateral cervical tract ascends through the center of this compartment." [FBC:VH, FlyBase:FBrf0155900] comment: Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "BPM" RELATED [] synonym: "larval baso-posterior midbrain" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001957 ! embryonic/larval deuterocerebrum (Drosophila) [Term] id: FBbt:00007064 name: dorsal centro-posterior lateral synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil domain of the larval brain that forms during the third instar from a dorsal region of the centro-posterior lateral compartment by growth of a neuropil glial sheath across it." [FlyBase:FBrf0155900] comment: Developmental relation to adult synaptic neuropil domains comes from a personal communication from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. subset: larval_OF ! larval olfactory system synonym: "CPLd" RELATED [] synonym: "dorsal centro-posterior lateral synaptic neuropil domain" EXACT [] synonym: "larval lateral horn" EXACT [FBC:VH] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007065 name: dorso-anterior synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil domain of the larval brain that is located dorsal to the medial lobe of the mushroom body, and which is separated from the dorso-posterior compartment by a neuropil glial sheath slightly posterior to the vertical lobe of the mushroom body." [FlyBase:FBrf0155900] comment: Developmental relation to adult synaptic neuropil domains comes from a personal communication from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "DA" EXACT [] synonym: "dorso-anterior synaptic neuropil compartment" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007066 name: dorso-posterior synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil domain of the larval brain that is located dorsal to the medial lobe of the mushroom body and which is separated from the dorso-anterior compartment by a neuropil glial sheath slightly posterior to the vertical lobe of the mushroom body. Axons from this compartment converge with those from the centro-posterior lateral compartment (CPL) to form the posterior transverse tract (PTT)." [FlyBase:FBrf0155900] comment: Developmental relation to adult synaptic neuropil domains comes from a personal communication from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "DP" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007067 name: baso-central synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "One of a group of synaptic neuropil domains of the larval brain which are located ventral to the mushroom body and are grouped around the long axon tracts connecting the larval protocerebrum to the ventral nerve cord. This medially located compartment contacts the baso-anterior compartment (BA) posteriorly." [FlyBase:FBrf0155900] comment: Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "BC" EXACT [] synonym: "centro-posterior medial neuropil compartment" EXACT [] synonym: "larval ventral body" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007068 name: baso-posterior lateral synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "One of a group of synaptic neuropil domains of the larval brain which are located ventral to the mushroom body and are grouped around the long axon tracts connecting the larval protocerebrum to the ventral nerve cord. This compartment contacts the baso-anterior compartment (BA) posteriorly, and is lateral to the baso-central (BC) and baso-posterior medial (BPM) compartments. It grows anteriorly during larval development." [FBC:VH, FlyBase:FBrf0155900] comment: Developmental relation to adult synaptic neuropil domains comes from a personal communication from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "BPL" EXACT [] synonym: "baso-posterior lateral" EXACT [] synonym: "larval ventro-lateral protocerebrum" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007069 name: centro-posterior lateral synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007124 def: "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-posterior medial compartment by the peduncle." [FlyBase:FBrf0155900] comment: Developmental relation to adult synaptic neuropil domain is a PC from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "CPL" EXACT [] synonym: "centro-posterior lateral neuropil compartment" EXACT [] synonym: "larval inferior lateral protocerebrum" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007070 name: centro-posterior medial synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-lateral compartment by the peduncle, and from the centro-posterior intermediate compartment by the antenno-cerebral tract to which it is connected via a branch." [FlyBase:FBrf0155900] comment: Developmental relation to adult synaptic neuropil domain is a PC from Volker Hartenstein. Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "CPM" RELATED [] synonym: "centro-posterior medial neuropil" EXACT [] synonym: "larval central complex" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007071 name: embryonic/larval ventro-lateral protocerebrum namespace: fly_anatomy.ontology is_obsolete: true replaced_by: FBbt:00007068 ! baso-posterior lateral synaptic neuropil domain (Drosophila) synonym: "BPL" RELATED [] synonym: "baso-posterio lateral compartment of larval protocerebrum" EXACT [] [Term] id: FBbt:00007072 name: anterior dorsal commissure (Drosophila) namespace: fly_anatomy.ontology def: "A commissure located anterior and dorsal of the fan-shaped body which connects the two superior lateral protocerebrum synaptic neuropil domains." [ISBN:978-3-540-07343-7] comment: From Strausfeld (ISBN:978-3-540-07343-7) pg 65 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH & WP. synonym: "DAC1" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007073 name: frontal median commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure located dorsal and anterior to of the fan-shaped body which connects the two superior medial protocerebrum neuropils." [ISBN:978-3-540-07343-7] comment: From Strausfeld (ISBN:978-3-540-07343-7) pg 71,69 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH & WP. synonym: "DAC2" EXACT [] synonym: "fr m c" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007074 name: lateral accessory lobe commissure (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00100353 def: "Commissure connecting the lateral accessory lobes running in front of the ellipsoid body, dorsal and anterior of the fan-shaped body." [FBC:BrainName] synonym: "LAL commissure" EXACT [FBC:BrainName] synonym: "LALC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "arched commissure of the ventral body" EXACT [ISBN:978-3-540-07343-7] synonym: "inter-ventral body commissure" EXACT [] synonym: "interventral body commissure" RELATED [] synonym: "lateral AL commissure" EXACT [] synonym: "ventral body commissure" EXACT [FlyBase:FBrf0049409] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007075 name: superior arch commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure located dorsal and anterior of the fan-shaped body that connects the two lateral horns and the two ventrolateral protocerebrum compartments." [ISBN:978-3-540-07343-7, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem2.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem1.html] synonym: "DPC1" EXACT [] synonym: "SAC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "s ar c" EXACT [] synonym: "superior arch" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007076 name: anterior cross (Drosophila) namespace: fly_anatomy.ontology def: "Commissure located dorsal and anterior of the fan-shaped body which links the two superior medial and lateral protocerebra." [ISBN:978-3-540-07343-7] comment: Could be a chiasm, rather than a commissure. is_a: FBbt:00007084 ! midline crossing tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007077 name: superior posteriolateral protocerebral commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure that is located dorsal and posterior of the fan-shaped body and passes near the lateral horn but does not actually enter the neuropil. Instead it bends downwards in its lateral parts and connects superior areas of the posteriolateral protocerebrum." [FBC:BrainName, ISBN:978-3-540-07343-7] comment: From Strausfeld (ISBN:978-3-540-07343-7) pg 63 & 99 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH, and named as 'commissure of lateral horn' due to its apparent connection to the lateral horns. However, Ito et al., (FBC:BrainName) argue that this commissure passes near the lateral horn but does not actually enter the neuropil. Instead it bends downwards in its lateral parts and connects superior areas of the posterior lateral protocerebrum. synonym: "DPC3" EXACT [] synonym: "c l ho" EXACT [] synonym: "commissure of lateral horns" EXACT [] synonym: "sPLPC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "superior PLP commissure" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007078 name: sub-ellipsoid commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure located anterior and ventral of the fan-shaped body that connects left and right ventral bodies." [ISBN:978-3-540-07343-7] synonym: "VAC3" EXACT [] synonym: "su e c" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00007079 name: inferior ventral body commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure located anterior and ventral of the fan-shaped body which connects left and right ventral bodies." [ISBN:978-3-540-07343-7] comment: Strausfeld, 1976 (ISBN:978-3-540-07343-7) refers to this as a connective, but it is clearly midline crossing. synonym: "I v bo con" EXACT [] synonym: "VAC4" EXACT [] synonym: "inferior ventral body connective" EXACT [ISBN:978-3-540-07343-7] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007080 name: great commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure located posterior and ventral to the fan-shaped body. It connects the left and right ventro-lateral protocerebrum, and the left and right optic lobes." [ISBN:978-3-540-07343-7] comment: From Strausfeld (ISBN:978-3-540-07343-7) pg 93 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH & WP. subset: cur ! cur synonym: "GC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "VPC2" EXACT [] synonym: "c op fo" EXACT [] synonym: "commissure of optic foci" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00007081 name: lateral medial fascicle (Drosophila) namespace: fly_anatomy.ontology def: "A transverse axon tract in the protocerebrum which is connected to the inferior lateral protocerebrum, the ventro-lateral protocerebrum and inferior medial protocerebrum." [FBC:VH, ISBN:978-3-540-07343-7] subset: cur ! cur synonym: "l m fasc" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00007082 name: medial fascicle (Drosophila) namespace: fly_anatomy.ontology def: "A vertical axon tract within the protocerebrum connected to the superior/inferior medial protocerebrum and to the ventral body." [ISBN:978-3-540-07343-7] subset: cur ! cur synonym: "m fasc" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00007083 name: posterior lateral fascicle (Drosophila) namespace: fly_anatomy.ontology def: "A vertical axon tract in the protocerebrum that connects the lateral horn and the optic foci. It emerges from the posterior lateral protocerebrum and terminates in the superior intermediate protocerebrum." [FBC:BrainName, ISBN:978-3-540-07343-7, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html] comment: From Strausfeld (ISBN:978-3-540-07343-7) pg 99 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH. synonym: "PLF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "p l fasc" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00007145 ! adult protocerebrum (Drosophila) [Term] id: FBbt:00007084 name: midline crossing tract (Drosophila) namespace: fly_anatomy.ontology def: "An axon tract that crosses the midline." [FBC:DOS-VH] is_a: UBERON:0001018 ! axon tract disjoint_from: FBbt:00007426 ! ipsilateral tract (Drosophila) [Term] id: FBbt:00007085 name: fascicle of optic foci (Drosophila) namespace: fly_anatomy.ontology def: "Longitudinal tract of the midbrain connecting anterior and posterior domains within the ventro-lateral protocerebrum and deuterocerebrum." [ISBN:978-3-540-07343-7] comment: From Strausfeld (ISBN:978-3-540-07343-7) pg 99 in Musca Domestica. Confirmed as present in Drosophila melanogaster by VH & WP, but possible disagreement (or terminology clash) between VH and WP. WP has it connecting optic foci to great commissure. synonym: "fasc op fo" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007086 name: posterior tract of the ventral body (Drosophila) namespace: fly_anatomy.ontology def: "Longitudinal tract of the midbrain connecting the ventral body and central complex to the inferior medial/lateral protocerebrum." [FBC:VH, ISBN:978-3-540-07343-7] synonym: "p t v bo" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007087 name: embryonic/larval cardial valve (Drosophila) namespace: fly_anatomy.ontology synonym: "larval cardial valve" EXACT [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00001882 ! embryonic/larval midgut (Drosophila) [Term] id: FBbt:00007088 name: neural lamella (Drosophila) namespace: fly_anatomy.ontology def: "Acellular sheath which forms the outermost layer of the central nervous system. It consists, in part, of a matrix of 'collagen-like' fibers and is invaded by tracheoles." [FlyBase:FBrf0058936, ISBN:978-0-7204-7136-6] is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00007089 name: perineurial sheath (Drosophila) namespace: fly_anatomy.ontology def: "The outermost cellular layer of the central nervous system, probably of mesodermal origin." [FlyBase:FBrf0057603, FlyBase:FBrf0058936] comment: Evidence of mesodermal origin comes from the observation that embryos lacking mesoderm lack this cell layer and the overlying neural lamella (Edwards et al., 1993)) synonym: "apical glial cell" EXACT [FlyBase:FBrf0206543] synonym: "neural lamella" RELATED [PMID:21438012] synonym: "perineural sheath" EXACT [] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00007090 ! perineurium (Drosophila) [Term] id: FBbt:00007090 name: perineurium (Drosophila) namespace: fly_anatomy.ontology def: "The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the sub-perineural glial sheath (sometimes referred to as the perineurial sheath inner layer)." [FlyBase:FBrf0057603, FlyBase:FBrf0191040, ISBN:978-0-7204-7136-6] comment: Some authors use this term only to refer to the double layer of cells covering the CNS (e.g. see Hartenstein and Jan, 1992), while other authors use it more broadly to include the covering of nerves (e.g.- see Banerjee et al., 2006). This ontology uses the term in its broad sense. is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: FBbt:00007092 name: antennal lobe glomerulus VM7 ventral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Ventral compartment of ventro-medial glomerulus 7." [FlyBase:FBrf0187305, FlyBase:FBrf0192533] comment: Note: This glomerulus not found in all samples when it was originally categorised. 'antennal lobe glomerulus 1' (see Couto et al., 1995) has been renamed to VM7v to comply with nomenclature used in Endo et al., 2007. synonym: "antennal lobe glomerulus 1" EXACT [FlyBase:FBrf0187305] synonym: "antennal lobe glomerulus VM7v" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007093 name: antennal lobe glomerulus 2 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the adult antennal lobe located on the same frontal plane as glomerulus DM3 (a landmark glomerulus). It lies dorsomedial to the posterior part of glomerulus V, and lateral to glomerulus VM6." [FlyBase:FBrf0107836] comment: Note: This glomerulus not found in all samples when it was originally categorised, so may not be present in all animals. is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007094 name: antennal lobe glomerulus compartment (Drosophila) namespace: fly_anatomy.ontology def: "Any glomerulus compartment (FBbt:00007362) that is part of some antennal lobe glomerulus (FBbt:00003925)." [FBC:auto_generated_definition, FlyBase:FBrf0107836] is_a: FBbt:00007362 ! glomerulus compartment (Drosophila) relationship: part_of FBbt:00003925 ! antennal lobe glomerulus (Drosophila) [Term] id: FBbt:00007095 name: antennal lobe glomerulus DL1 dorsal compartment namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00003968 ! antennal lobe glomerulus DL1 (Drosophila) comment: Made obsolete because no evidence is present in the literature that this or the ventral compartment exist, though a lateral compartment appears to exist, based on innervation patterns (see FBrf0211729). Consider using FBbt:00003968. synonym: "DL1d" EXACT [] [Term] id: FBbt:00007096 name: antennal lobe glomerulus DL1 ventral compartment namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00003968 ! antennal lobe glomerulus DL1 (Drosophila) comment: Made obsolete because no evidence is present in the literature that this or the ventral compartment exist, though a lateral compartment appears to exist, based on innervation patterns (see FBrf0211729). Consider using FBbt:00003968. synonym: "DL1v" EXACT [] [Term] id: FBbt:00007097 name: antennal lobe glomerulus DP1 medial compartment (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most compartment of glomerulus DP1. It lies lateral to glomerulus DM1." [FlyBase:FBrf0107836] synonym: "DP1m" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003977 ! antennal lobe glomerulus DP1 (Drosophila) [Term] id: FBbt:00007098 name: antennal lobe glomerulus DP1 lateral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most compartment of the DP1 glomerulus. It lies dorsomedial to the dorsal compartment of glomerulus DL2." [FlyBase:FBrf0107836] synonym: "DP1l" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003977 ! antennal lobe glomerulus DP1 (Drosophila) [Term] id: FBbt:00007099 name: antennal lobe glomerulus VA1 lateral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Large, lateral-most compartment of antennal lobe glomerulus VA1. It lies along the ventral side of the dorsal compartment of glomerulus VA1, and is dorsal to glomerulus VA5." [FlyBase:FBrf0107836] synonym: "VA1l" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003936 ! antennal lobe glomerulus VA1 (Drosophila) [Term] id: FBbt:00007100 name: antennal lobe glomerulus VA1 medial compartment (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most compartment of glomerulus VA1. It lies dorsomedial to glomerulus VA1d and lateral to glomerulus VA6." [FlyBase:FBrf0107836] synonym: "VA1m" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003936 ! antennal lobe glomerulus VA1 (Drosophila) [Term] id: FBbt:00007101 name: antennal lobe glomerulus VA1 dorsal compartment (Drosophila) namespace: fly_anatomy.ontology def: "Large, dorsal-most compartment of glomerulus VA1. It lies ventral to glomerulus DA1, and dorsal to the lateral compartment of glomerulus VA1." [FlyBase:FBrf0107836] synonym: "VA1d" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003936 ! antennal lobe glomerulus VA1 (Drosophila) [Term] id: FBbt:00007102 name: antennal lobe glomerulus VA7 medial compartment (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most compartment of glomerulus VA7. It lies along the medial edge of the lateral compartment and dorsolateral to glomerulus VA2." [FlyBase:FBrf0107836] synonym: "VA7m" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003945 ! antennal lobe glomerulus VA7 (Drosophila) [Term] id: FBbt:00007103 name: antennal lobe glomerulus VA7 lateral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most compartment of glomerulus VA7. It lies along the lateral border of the medial compartment and dorsomedial to glomerulus VA5" [FlyBase:FBrf0107836] synonym: "VA7l" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003945 ! antennal lobe glomerulus VA7 (Drosophila) [Term] id: FBbt:00007104 name: antennal lobe glomerulus VC3 medial compartment (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most compartment of glomerulus VC3. It lies along the dorsomedial edge of the lateral compartment of glomerulus 3, and immediately dorsal to glomerulus VM6." [FlyBase:FBrf0107836] synonym: "VC3m" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003953 ! antennal lobe glomerulus VC3 (Drosophila) [Term] id: FBbt:00007105 name: antennal lobe glomerulus VC3 lateral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most compartment of glomerulus VC3. It lies along the ventrolateral edge of the medial compartment of glomerulus VC3, and immediately dorsal to glomerulus VM7." [FlyBase:FBrf0107836] synonym: "VC3l" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003953 ! antennal lobe glomerulus VC3 (Drosophila) [Term] id: FBbt:00007106 name: antennal lobe glomerulus VL2 anterior compartment (Drosophila) namespace: fly_anatomy.ontology def: "Anterior- and dorsal-most compartment of glomerulus VL2. It lies along the dorsoanterior edge of the posterior compartment, and ventrolateral to the dorsal compartment of glomerulus DL2." [FlyBase:FBrf0107836] synonym: "VL2a" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003955 ! antennal lobe glomerulus VL2 (Drosophila) [Term] id: FBbt:00007107 name: antennal lobe glomerulus VL2 posterior compartment (Drosophila) namespace: fly_anatomy.ontology def: "Posterior- and ventral-most compartment of glomerulus VL2. It lies along the ventroposterior edge of the anterior compartment, and dorsolateral to glomerulus VL1." [FlyBase:FBrf0107836] synonym: "VL2p" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003955 ! antennal lobe glomerulus VL2 (Drosophila) [Term] id: FBbt:00007108 name: imaginal disc epithelial cell (Drosophila) namespace: fly_anatomy.ontology def: "A columnar epithelial cell with distinct apical-basal polarity. The apical surface has microvilli with dense plaques at their tips. A cortical network (ring) of actin filaments underlies the apical surface, extends into the microvilli and is associated with a zonula adherens which encircles each cell. Below this is a broad region of pleated sheet type septate junctions connecting all lateral surfaces to adjacent cells. Plaque-like gap junctions occur mainly interspersed among septate junctions and, at a lower frequency, below them. Small, sparsely distributed hemidesmosomes attach these cells to the underlying basal lamina." [FlyBase:FBrf0064790] is_a: CL:0000066 ! epithelial cell relationship: part_of FBbt:00007029 ! disc epithelium proper (Drosophila) [Term] id: FBbt:00007109 name: imaginal disc anterior compartment (Drosophila) namespace: fly_anatomy.ontology def: "Anterior half of an imaginal disc. During growth of the disc, cells of the anterior compartment do not cross into the posterior compartment. With the exception of the eye-antennal disc, the boundary between these two compartments is defined at the time of disc specification by a parasegment boundary running through the disc anlage." [FlyBase:FBrf0064789] subset: cur ! cur is_a: FBbt:00007110 ! developmental compartment (Drosophila) is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000939 ! imaginal disc [Term] id: FBbt:00007110 name: developmental compartment (Drosophila) namespace: fly_anatomy.ontology subset: FB_gloss ! terms for FlyBase glossary page is_a: UBERON:0005423 ! developing anatomical structure [Term] id: FBbt:00007111 name: imaginal disc posterior compartment (Drosophila) namespace: fly_anatomy.ontology def: "Posterior half of an imaginal disc. During growth of the disc, cells of the posterior compartment do not cross into the anterior compartment. With the exception of the eye-antennal disc, the boundary between these two compartments is defined at the time of disc specification by a parasegment boundary running through the disc anlage." [FlyBase:FBrf0064789] subset: cur ! cur is_a: FBbt:00007110 ! developmental compartment (Drosophila) is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000939 ! imaginal disc [Term] id: FBbt:00007112 name: mushroom body cortex (Drosophila) namespace: fly_anatomy.ontology def: "Region of the cortex overlying the mushroom body calyx. It is distinct from the surrounding cortex because it contains the cell bodies of Kenyon cells (globuli cell bodies) which are smaller than other neuronal cell bodies (soma) in the midbrain cortex." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/silver/horiz/hrsil22.html] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00007114 ! cortex of the central nervous system (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00007113 name: mushroom body neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast precursor of the Kenyon cells. The Kenyon cells of each mushroom body descend from just 4 mushroom body neuroblasts. These neuroblasts remain mitotically active throughout larval stages and into the late pupal stage." [FlyBase:FBrf0047815, FlyBase:FBrf0092568] comment: These neuroblasts are almost certainly identical with other named pro-cephalic neuroblasts in this ontology. They should be merged with these when suitable mappings become available. ds080219. synonym: "MB-Nb" EXACT [] is_a: FBbt:00001334 ! protocerebral neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00005508 ! mushroom body primordium (Drosophila) relationship: part_of FBbt:00011929 ! larval mushroom body (Drosophila) [Term] id: FBbt:00007114 name: cortex of the central nervous system (Drosophila) namespace: fly_anatomy.ontology def: "Superficial neuronal layer of the central nervous system, composed of glia and the cell bodies of neurons (soma). The cortex lies under the perineurium." [ISBN:978-0-7204-7136-6] synonym: "perikaryal rind" EXACT [FlyBase:FBrf0207181] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00007115 name: embryonic/larval neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Any neuroblast (FBbt:00005146) that is part of some larva (FBbt:00001727)." [FBC:auto_generated_definition, FlyBase:FBrf0047815] subset: cur ! cur synonym: "larval neuroblast" RELATED [] is_a: CL:0000031 ! neuroblast relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00007116 name: presumptive embryonic/larval system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo." [FBC:DOS] is_a: FBbt:00040003 ! non-connected developing system (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: FBbt:00007117 name: neuropil glial sheath (Drosophila) namespace: fly_anatomy.ontology def: "Layer of glial cells which largely surrounds a region of neuropil in the central nervous system." [FlyBase:FBrf0155900] synonym: "glial septum" RELATED [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00007118 name: centro-anterior synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "Small synaptic neuropil domain of the larval protocerebrum that is located anterior to the medial mushroom body lobe. It contains numerous fine axons which project medially and contribute to the anterior transverse tract (ATT) and the medial cervical tract (MCT)." [FlyBase:FBrf0155900] comment: Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "CA" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007119 name: anterior transverse tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract of the larval brain connected to the central anterior synaptic neuropil domain." [FlyBase:FBrf0155900] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007120 name: posterior transverse tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract of the larval brain formed by axons converging from the dorso-posterior and centro-posterior lateral compartments. This tract runs medial along the neuropil glial sheath between the dorso-posterior compartment and the mushroom body calyx before it joins the dorsal posterior commissure." [FlyBase:FBrf0155900] synonym: "PTT" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007121 name: dorsal posterior commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure of the larval brain which is connected to (among others) the posterior transverse tract." [FlyBase:FBrf0155900] synonym: "DPC" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007122 name: dorsal posterior protocerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "A vertical axon tract of the larval brain connecting the dorso-posterior compartment (DP) to the subesophageal ganglion. The tract dives ventrally through the centro-posterior intermediate compartment (CPI) towards the posterior boundary of the basoposterior medial compartment where it joins the posterior cervical tract (PCT)." [FlyBase:FBrf0155899, FlyBase:FBrf0155900] synonym: "DPPT" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007125 name: centro-posterior intermediate synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-posterior medial compartment by the antenno-cerebral tract to which it is connected by a branch. Its axons project mainly into the posterior transverse tract and it receives a branch of the antenno-cerebral tract." [FlyBase:FBrf0155900] comment: Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "CPI" RELATED [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007126 name: embryonic/larval posterior cervical tract (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0155900, FlyBase:FBrf0192734] synonym: "PCT" RELATED [] synonym: "larval posterior cervical tract" EXACT [] is_a: UBERON:0001018 ! axon tract relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007127 name: embryonic/larval antennal lobe (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007062 def: "Paired synaptic neuropil domain of the larval deuterocerebrum, located ventral to the mushroom body, that is the major target of innervation for axons carried by the antennal nerve. It is also connected to the antero-basal tract (ABT). Its posterior boundary contacts the basocentral (BC), basoposterior medial (BPM), basoposterior lateral and the basocervical (Bcv) synaptic neuropil domains." [FlyBase:FBrf0155900] comment: Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. subset: larval_OF ! larval olfactory system synonym: "BA" EXACT [] synonym: "LAL" EXACT [FlyBase:FBrf0147119] synonym: "antennal compartment" EXACT [] synonym: "baso-anterior synaptic neuropil domain" EXACT [FlyBase:FBrf0155900] synonym: "larval antennal lobe" EXACT [] synonym: "larval olfactory lobe" RELATED [] is_a: FBbt:00003924 ! antennal lobe (Drosophila) relationship: part_of FBbt:00001957 ! embryonic/larval deuterocerebrum (Drosophila) [Term] id: FBbt:00007128 name: antero-basal tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract of the larval brain which is connected to the baso-anterior synaptic neuropil domain (BA; antennal compartment). This tract travels along the neuropil glial sheath which forms the boundary between baso-anterior (BA) and baso-central (BC) synaptic neuropil domains. The tract then turns dorsally to make the antennal root of the antenno-cerebral tract (ACT)." [FlyBase:FBrf0155899, FlyBase:FBrf0155900] subset: larval_OF ! larval olfactory system synonym: "ABT" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007129 name: baso-cervical synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "One of a group of synaptic neuropil domains of the larval brain which are located ventral to the mushroom body and are grouped around the long axon tracts connecting the larval protocerebrum to the ventral nerve cord. This compartment contacts the baso-anterior compartment (BA) posteriorly and guides the medial cervical tract (MCT)." [FBC:VH, FlyBase:FBrf0155900] comment: Note - description of relative location of brain structures in this definition is based on Younossi-Hartenstein et al., 2003, description of the first instar larval brain. As there is some non-isometric growth of compartments during larval stages, some elements of this description may not apply to the third instar larval brain. ds080222. synonym: "Bcv" EXACT [] synonym: "baso-cervical neuropil compartment" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007130 name: baso-medial protocerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "An axon tract of the larval brain which is a branch of the lateral cervical tract. The branch point, at the center of the basal synaptic neuropil domain (the neuropil glial sheath between baso-posterio medial (BPM), baso-central (BC) and baso-posterior lateral (BPL)) compartments is known as the anterior hub. It crosses the baso-posterior lateral compartment (BPL) where it splays out into several terminal branches." [FlyBase:FBrf0155899, FlyBase:FBrf0155900] synonym: "BMPT" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007131 name: larval optic focus (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil domain of the larval brain formed during larval stages by axons originating from the lobula primordium in the optic lobe and dorso-lateral protocerebrum. These axons form terminal branches beyond the borders of the centro-posterior lateral and baso-lateral compartments which then become enclosed by a glial sheath, forming this compartment." [FlyBase:FBrf0155900] synonym: "LOF" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007132 name: dorsal air sac (Drosophila) namespace: fly_anatomy.ontology def: "Large, multi-lobed air sac of the dorsal adult thorax." [FlyBase:FBrf0064787] is_a: FBbt:00003101 ! tracheal air sac (Drosophila) relationship: develops_from FBbt:00007135 ! dorsal air sac primordium (Drosophila) [Term] id: FBbt:00007133 name: air sac subdivision (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0003914 ! epithelial tube relationship: part_of FBbt:00003101 ! tracheal air sac (Drosophila) [Term] id: FBbt:00007134 name: head air sac (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal air sac (FBbt:00003101) that is part of some adult head (FBbt:00003007)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] is_a: FBbt:00003101 ! tracheal air sac (Drosophila) relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00007135 name: dorsal air sac primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium formed by tracheoblasts that bud from the tracheal branch which adheres to the wing disc during the late larval stage. During pupal stages this primordium forms an epithelial sac. Cells at the tip of this primordium show extensive protrusive activity - producing filopodia and lamellopodia - while maintaining epithelial integrity (including adherens junctions with their neighbors) ." [FlyBase:FBrf0151893, FlyBase:FBrf0190195] is_a: FBbt:00007477 ! air sac primordium (Drosophila) is_a: UBERON:0000485 ! simple columnar epithelium [Term] id: FBbt:00007136 name: male germline cyst (Drosophila) namespace: fly_anatomy.ontology def: "Unit of spermatogenic differentiation consisting of a pair of cyst cells enclosing the developing germline cells." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00004875 ! germline cyst (Drosophila) relationship: part_of UBERON:0000473 ! testis [Term] id: FBbt:00007137 name: female germline cyst (Drosophila) namespace: fly_anatomy.ontology def: "A cyst of female germ cells interconnected by ring canals. Each cyst originates as a single cystoblast which divides to form 16 cystocytes. These become enveloped in a follicle cell epithelium as they pass through region 2 of the germarium. Cysts that have left the germarium are termed egg chambers." [FlyBase:FBrf0064777] is_a: FBbt:00004875 ! germline cyst (Drosophila) [Term] id: FBbt:00007138 name: spermatogonial cyst (Drosophila) namespace: fly_anatomy.ontology subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00007136 ! male germline cyst (Drosophila) [Term] id: FBbt:00007139 name: male fusome (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00004862 ! fusome (Drosophila) [Term] id: FBbt:00007140 name: female fusome (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00004862 ! fusome (Drosophila) [Term] id: FBbt:00007141 name: germinal proliferation center hub (Drosophila) namespace: fly_anatomy.ontology def: "A cone shaped cluster of densely packed cells at the center of the germinal proliferation center. It is anchored to the tip of the testis via apical connections to the thick, convoluted basal lamina found there." [FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00005259 ! germinal proliferation center (Drosophila) [Term] id: FBbt:00007142 name: eye disc anterior to the morphogenetic furrow (Drosophila) namespace: fly_anatomy.ontology def: "Portion of imaginal disc epithelium which is anterior to the morphogenetic furrow of the eye disc." [FlyBase:FBrf0064798] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00001768 ! eye disc (Drosophila) [Term] id: FBbt:00007143 name: eye disc posterior to the morphogenetic furrow (Drosophila) namespace: fly_anatomy.ontology def: "Portion of the eye disc which is posterior to the morphogenetic furrow. It contains developing ommatidial clusters whose maturity increases with distance posterior to the furrow." [FlyBase:FBrf0064798] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00001768 ! eye disc (Drosophila) [Term] id: FBbt:00007144 name: early ommatidial precursor cluster (Drosophila) namespace: fly_anatomy.ontology def: "An ommatidial precursor cluster containing 5 prospective photoreceptors and 1-2 mystery cells. The definitive 5 cell ommatidial precluster is formed when these mystery cells are expelled from this structure and join the surrounding undifferentiated epithelium." [FlyBase:FBrf0064798] is_a: FBbt:00001770 ! ommatidial precursor cluster (Drosophila) [Term] id: FBbt:00007145 name: adult protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Protocerebrum of the adult." [FBC:SPR] is_a: FBbt:00003627 ! protocerebrum (Drosophila) relationship: part_of FBbt:00003011 ! adult labral segment (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007146 name: adult deuterocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Deuterocerebrum of the adult." [FBC:SPR] synonym: "adult deutocerebrum" EXACT [] is_a: FBbt:00003923 ! deuterocerebrum (Drosophila) relationship: part_of FBbt:00003012 ! adult antennal segment (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007147 name: adult tritocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Tritocerebrum of the adult brain." [FBC:SPR] is_a: FBbt:00003999 ! tritocerebrum (Drosophila) relationship: part_of FBbt:00003013 ! adult intercalary segment (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007148 name: embryonic/larval antenno-cerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "Antenno-cerebral tract of the larva." [FlyBase:FBrf0155899, FlyBase:FBrf0155900] subset: larval_OF ! larval olfactory system synonym: "larval antenno-cerebral tract" EXACT [] is_a: FBbt:00001635 ! antenno-cerebral tract (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007149 name: segment of antenna (Drosophila) namespace: fly_anatomy.ontology def: "Any appendage segment (FBbt:00007018) that is part of some antenna (FBbt:00004511)." [FBC:auto_generated_definition] is_a: FBbt:00007018 ! appendage segment (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00007150 name: segment of leg (Drosophila) namespace: fly_anatomy.ontology def: "Any appendage segment (FBbt:00007018) that is part of some leg (FBbt:00004640)." [FBC:auto_generated_definition] is_a: FBbt:00007018 ! appendage segment (Drosophila) relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00007151 name: adult antennal sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some antenna (FBbt:00004511)." [FBC:auto_generated_definition] is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: FBbt:00005806 ! antennal sense organ (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00007153 name: embryonic/larval antennal lobe glomerulus (Drosophila) namespace: fly_anatomy.ontology def: "Any glomerulus (FBbt:00005386) that is part of some embryonic/larval antennal lobe (FBbt:00007127)." [FBC:auto_generated_definition] subset: larval_OF ! larval olfactory system synonym: "larval antennal lobe glomerulus" EXACT [] is_a: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00007154 name: larval antennal lobe glomerulus a1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007155 name: larval antennal lobe glomerulus a2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007156 name: larval antennal lobe glomerulus a3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007157 name: anterior bundle (Drosophila) namespace: fly_anatomy.ontology def: "Tract which runs through the hole in the middle of the ellipsoid body (the ellipsoid body canal)." [FlyBase:FBrf0049409] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00007158 name: maxillary segment of adult subesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html] subset: BrainName ! BrainName project terms is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003016 ! adult maxillary segment (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00007159 name: mandibular segment of adult subesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html] subset: BrainName ! BrainName project terms is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003015 ! adult mandibular segment (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00007160 name: labial segment of adult subesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/sagschem2.html] subset: BrainName ! BrainName project terms is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00003017 ! adult labial segment (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00007161 name: maxillary subesophageal commissure (Drosophila) namespace: fly_anatomy.ontology def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem2.html] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00007158 ! maxillary segment of adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00007162 name: labial commissure (Drosophila) namespace: fly_anatomy.ontology def: "." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/horizschem2.html] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00007160 ! labial segment of adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00007163 name: ventral arm of pharyngeal sclerite (Drosophila) namespace: fly_anatomy.ontology def: "Ventral process (arm) of the pharyngeal sclerite that directly contacts the pharynx." [FlyBase:FBim0000950, FlyBase:FBrf0045366] comment: This term replaces the much misused term 'ventral wing' (FBbt:00001852). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "ventral cornua" EXACT [] synonym: "ventral wing" EXACT [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001850 ! pharyngeal sclerite (Drosophila) [Term] id: FBbt:00007164 name: dorsal arm of pharyngeal sclerite (Drosophila) namespace: fly_anatomy.ontology def: "Paired dorsal process of the pharyngeal sclerite. This structure, into which the cibarial muscle inserts, is situated in the narrow lumen of the dorsal pouch. It is connected anteriorly to the dorsal bridge (also known as latticed process) and ventrally to the vertical bridge (also known as vertical plate)." [FlyBase:FBim0000950, FlyBase:FBrf0045366] comment: This term replaces the much misused term 'dorsal wing' (FBbt:00001853). synonym: "dorsal cornua" EXACT [] synonym: "dorsal process" RELATED [] synonym: "dorsal wing" EXACT [] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00001850 ! pharyngeal sclerite (Drosophila) [Term] id: FBbt:00007165 name: dorsal wing blade (Drosophila) namespace: fly_anatomy.ontology def: "Parts of the wing blade and margin which develop from the dorsal compartment of the wing pouch." [FBC:DOS] is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00007166 name: ventral wing blade (Drosophila) namespace: fly_anatomy.ontology def: "Parts of the wing blade and margin which develop from the ventral compartment of the wing pouch." [FBC:DOS] is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: FBbt:00007167 name: larval antennal lobe glomerulus a4 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007168 name: larval antennal lobe glomerulus a5 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007169 name: larval antennal lobe glomerulus a6 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007170 name: larval antennal lobe glomerulus a7 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007171 name: larval antennal lobe glomerulus a8 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007172 name: larval antennal lobe glomerulus m1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007173 name: cholinergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some acetylcholine (CHEBI:15355)." [FBC:auto_generated_definition] subset: larval_OF ! larval olfactory system is_a: CL:0000540 ! neuron [Term] id: FBbt:00007174 name: larval antennal lobe glomerulus m2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007175 name: larval antennal lobe glomerulus m3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007176 name: larval antennal lobe glomerulus m4 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007177 name: larval antennal lobe glomerulus m5 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007178 name: larval antennal lobe glomerulus m6 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007179 name: larval antennal lobe glomerulus m7 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007180 name: larval antennal lobe glomerulus m8 namespace: fly_anatomy.ontology alt_id: FBbt:00007181 is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007182 name: larval antennal lobe glomerulus p1 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007183 name: larval antennal lobe glomerulus p2 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007184 name: larval antennal lobe glomerulus p3 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007185 name: larval antennal lobe glomerulus p4 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007186 name: larval antennal lobe glomerulus p5 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007187 name: larval antennal lobe glomerulus p6 namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0191451] is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007188 name: larval antennal lobe glomerulus p7 namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) comment: Made obsolete because of switch to nomenclature used by Masuda-Nakagawa et al., (2009). Consolidation of the two systems is not possible due to variations in data. Consider using FBbt:00005386 subset: larval_OF ! larval olfactory system [Term] id: FBbt:00007189 name: central dome sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Dome shaped cuticular process of the dorsal organ, innervated by seven circularly arranged triplets of olfactory receptor neuron (ORN) dendrites. The wall of the dome has numerous pore channels, consistent with a role as an olfactory sense organ." [FlyBase:FBrf0089570] subset: larval_OF ! larval olfactory system is_a: FBbt:00002654 ! embryonic/larval antennal segment sensillum (Drosophila) is_a: FBbt:00007231 ! external sensillum (Drosophila) is_a: FBbt:00007242 ! embryonic/larval head sensillum (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00007190 name: olfactory receptor neuron of dorsal organ (Drosophila) namespace: fly_anatomy.ontology def: "Odorant receptor expressing bipolar neuron whose dendrite innervates the central dome sensillum of the dorsal organ, whose cell body is part of the dorsal organ ganglion and whose axon is carried by the antennal nerve to innervate a larval antennal lobe glomerulus." [FlyBase:FBrf0147119, FlyBase:FBrf0187327] subset: larval_OF ! larval olfactory system synonym: "DO ORN" EXACT [] synonym: "DO OSN" EXACT [] synonym: "odorant receptor neuron of dorsal organ" EXACT [] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00007189 ! central dome sensillum (Drosophila) [Term] id: FBbt:00007191 name: calyx of larval mushroom body (Drosophila) namespace: fly_anatomy.ontology subset: larval_OF ! larval olfactory system is_a: FBbt:00003685 ! mushroom body calyx (Drosophila) relationship: part_of FBbt:00011929 ! larval mushroom body (Drosophila) [Term] id: FBbt:00007192 name: larval MB calyx glomerulus A1 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located posteriolaterally in the larval mushroom body calyx. It lies posterior to calyx glomerulus L7 and anteriolateral to calyx glomerulus A4. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 82a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007193 name: larval MB calyx glomerulus A2 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located ventral to the larval mushroom body calyx A1." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007194 name: larval MB calyx glomerulus V3 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located centrally on the ventral surface of the larval mushroom body calyx. It lies anteroventral to calyx glomerulus L9 and medial to calyx glomerulus L10. Projection neurons connect this glomerulus to the subesophageal ganglion." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007195 name: larval MB calyx glomerulus D1 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located anteroventrally in the larval mushroom body calyx. It lies lateral to calyx glomerulus D4 and medial to calyx glomerulus L1. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 33b/47a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007196 name: larval MB calyx glomerulus L1 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located dorsolateral in the larval mushroom body calyx. It lies lateral to calyx glomerulus D1 and posteriodorsal to calyx glomerulus D2. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 13a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007197 name: larval MB calyx glomerulus M3 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located at the ventromedial corner of the larval mushroom body calyx. It lies ventral to calyx glomerulus M1 and anteroventral to calyx glomerulus M4. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 83a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007198 name: larval MB calyx glomerulus A3 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located posteriomedial in the larval mushroom body calyx. It lies dorsomedial to calyx glomerulus A4 and posterioventral to calyx glomerulus M6. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 45a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007199 name: larval MB calyx glomerulus V4 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located posterior to the larval mushroom body calyx A3." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007200 name: larval MB calyx glomerulus L2 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located on the medial edge of the larval mushroom body calyx. It lies anterior to calyx glomerulus L7 and lateral to calyx glomerulus L1. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 24a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007201 name: larval MB calyx glomerulus D3 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located dorsomedial in the larval mushroom body calyx. It lies posterior to calyx glomerulus D1 and medial to calyx glomerulus L3. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 49a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007202 name: larval MB calyx glomerulus I8 (Drosophila) namespace: fly_anatomy.ontology subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007203 name: larval MB calyx glomerulus I1 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located internal to larval mushroom body calyx L6 and L1." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007204 name: larval MB calyx glomerulus D5 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located anteromedial to the larval mushroom body calyx D3." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007205 name: larval MB calyx glomerulus I7 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located interior to the larval mushroom body calyx M1." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007206 name: larval MB calyx glomerulus A4 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located at the posterioventral margin of the larval mushroom body calyx. It lies ventrolateral to calyx glomerulus A3 and ventromedial to calyx glomerulus A1. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 1a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007207 name: larval MB calyx glomerulus L7 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located at the lateral edge of the larval mushroom body calyx. It lies posterior to calyx glomerulus L2 and lateral to calyx glomerulus L3." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007208 name: larval MB calyx glomerulus M1 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located at the anteromedial corner of the larval mushroom body calyx. It lies ventral to calyx glomerulus D4 and anterior to calyx glomerulus M4." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007209 name: larval MB calyx glomerulus I2 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It lies internal to the larval mushroom body calyx A1." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007210 name: larval MB calyx glomerulus V7 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located anterior to the larval mushroom body calyx M4." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007211 name: larval MB calyx glomerulus V6 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located anteriolateral to the larval mushroom body calyx glomerulus V1." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007212 name: larval MB calyx glomerulus D4 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located at the anteromedial edge of the larval mushroom body calyx. It lies medial to calyx glomerulus D1 and anterior to calyx glomerulus M4. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 45b." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007213 name: larval MB calyx glomerulus M2 (Drosophila) namespace: fly_anatomy.ontology subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007214 name: larval MB calyx glomerulus L5 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located ventrolateral in the larval mushroom body calyx. It lies posterior to calyx glomerulus L4 and ventral to calyx glomerulus L6." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007215 name: larval MB calyx glomerulus I4 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located internal to the larval mushroom body calyx glomerulus L7." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007216 name: larval MB calyx glomerulus M4 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located medially in the larval mushroom body calyx. It lies posterior to calyx glomerulus M1 and ventromedial to calyx glomerulus D3. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 30a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007217 name: larval MB calyx glomerulus V2 (Drosophila) namespace: fly_anatomy.ontology subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007218 name: larval MB calyx glomerulus D2 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most glomerulus of the larval mushroom body calyx. It lies anteromedial to calyx glomerulus L4 and anterodorsal to calyx glomerulus L1." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007219 name: larval MB calyx glomerulus I6 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located medial to the larval mushroom body calyx I5." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007220 name: larval MB calyx glomerulus I3 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus located in the centre of the larval mushroom body calyx. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 33a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007221 name: larval MB calyx glomerulus I5 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located ventral to the larval mushroom body calyx glomerulus D1." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007222 name: larval MB calyx glomerulus V5 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located centrally at the posterior tip of the larval mushroom body calyx. It lies ventral to calyx glomerulus A4 and posterior to calyx glomerulus L9. Projection neurons connect this glomerulus to larval antennal lobe glomerulus 63a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007223 name: larval MB calyx glomerulus V8 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located anterior to the larval mushroom body calyx V6." [FlyBase:FBrf0191451] subset: larval_OF ! larval olfactory system is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007224 name: larval mushroom body calyx glomerulus (Drosophila) namespace: fly_anatomy.ontology def: "Any glomerulus (FBbt:00005386) that is part of some calyx of larval mushroom body (FBbt:00007191)." [FBC:auto_generated_definition] subset: larval_OF ! larval olfactory system is_a: UBERON:0001047 ! neural glomerulus relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00007225 name: embryonic/larval antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "An antennal lobe projection neuron that is part of the embryonic/larval brain. The soma of these neurons are located in two clusters: anterodorsal and lateral." [FlyBase:FBrf0147119, FlyBase:FBrf0187327] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00007422 ! antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00007226 name: local interneuron of larval antennal lobe (Drosophila) namespace: fly_anatomy.ontology def: "A local interneuron that connects glomeruli within the larval antennal lobe." [FlyBase:FBrf0152159, FlyBase:FBrf0187327] subset: larval_OF ! larval olfactory system is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00007227 name: dorsal organ ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Ganglion situated posterior to the larval dorsal organ which contains the cell bodies of the odorant receptor cells which send dendrites into the dorsal organ and axons to the antennal lobe via the larval antennal nerve." [FlyBase:FBrf0147119] subset: larval_OF ! larval olfactory system is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) [Term] id: FBbt:00007228 name: GABAergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some gamma-aminobutyric acid (CHEBI:16865)." [FBC:auto_generated_definition] subset: larval_OF ! larval olfactory system synonym: "GABA-ergic neuron" EXACT [] is_a: FBbt:00007368 ! aminergic neuron (Drosophila) [Term] id: FBbt:00007229 name: cell cluster organ (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of cells of various types which form a discrete structure with a largely bona fide boundary." [FBC:DOS] is_a: FBbt:00100313 ! multicellular structure (Drosophila) disjoint_from: FBbt:00007230 ! compound cell cluster organ (Drosophila) disjoint_from: FBbt:00007330 ! organ system subdivision (Drosophila) [Term] id: FBbt:00007230 name: compound cell cluster organ (Drosophila) namespace: fly_anatomy.ontology def: "An anatomical structure consisting of multiple cell cluster organs and which does not contain portions of tissue." [FBC:DOS] is_a: FBbt:00100313 ! multicellular structure (Drosophila) disjoint_from: FBbt:00007229 ! cell cluster organ (Drosophila) disjoint_from: FBbt:00007330 ! organ system subdivision (Drosophila) [Term] id: FBbt:00007231 name: external sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS] is_a: FBbt:00005168 ! external sensory organ (Drosophila) is_a: UBERON:0002536 ! arthropod sensillum [Term] id: FBbt:00007232 name: eo-type sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570] synonym: "eso" RELATED [] is_a: FBbt:00007231 ! external sensillum (Drosophila) [Term] id: FBbt:00007233 name: internal sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] is_a: FBbt:00007373 ! internal sense organ (Drosophila) is_a: UBERON:0002536 ! arthropod sensillum [Term] id: FBbt:00007234 name: compound sense organ (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00002653 def: "Any compound cell cluster organ (FBbt:00007230) that functions in (some) detection of stimulus involved in sensory perception (GO:0050906)." [FBC:auto_generated_definition] synonym: "compound sensillum" EXACT [] is_a: FBbt:00007230 ! compound cell cluster organ (Drosophila) is_a: UBERON:0000020 ! sense organ [Term] id: FBbt:00007235 name: external compound sense organ (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00005168 ! external sensory organ (Drosophila) is_a: FBbt:00007234 ! compound sense organ (Drosophila) [Term] id: FBbt:00007236 name: internal compound sense organ (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007234 ! compound sense organ (Drosophila) [Term] id: FBbt:00007237 name: pentascolopidial chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "A chordotonal organ containing 5 scolopidia." [FBC:DOS] is_a: UBERON:0001038 ! chordotonal organ [Term] id: FBbt:00007238 name: triscolopidial chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "A chordotonal organ consisting of 3 scolopidia." [FBC:DOS] is_a: UBERON:0001038 ! chordotonal organ [Term] id: FBbt:00007239 name: adult sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some adult (FBbt:00003004)." [FBC:auto_generated_definition] is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00007240 name: embryonic/larval sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larva (FBbt:00001727)." [FBC:auto_generated_definition] synonym: "larval sensillum" EXACT [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00007241 name: adult head sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some adult head (FBbt:00003007)." [FBC:auto_generated_definition] is_a: FBbt:00007239 ! adult sensillum (Drosophila) is_a: UBERON:0000963 ! head sensillum relationship: part_of FBbt:00003007 ! adult head (Drosophila) [Term] id: FBbt:00007242 name: embryonic/larval head sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval head (FBbt:00001730)." [FBC:auto_generated_definition] synonym: "larval head sensillum" EXACT [] is_a: FBbt:00007240 ! embryonic/larval sensillum (Drosophila) is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) is_a: UBERON:0000963 ! head sensillum relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00007243 name: embryonic/larval foregut sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some embryonic/larval foregut (FBbt:00001862)." [FBC:auto_generated_definition] synonym: "larval foregut sensillum" RELATED [] is_a: FBbt:00007240 ! embryonic/larval sensillum (Drosophila) relationship: part_of FBbt:00001862 ! embryonic/larval foregut (Drosophila) [Term] id: FBbt:00007244 name: embryonic/larval thoracic sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any sensillum (FBbt:00007152) that is part of some larval thorax (FBbt:00001741)." [FBC:auto_generated_definition] synonym: "larval thoracic sensillum" EXACT [] is_a: FBbt:00007240 ! embryonic/larval sensillum (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) [Term] id: FBbt:00007245 name: cuticular specialization (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001001 ! chitin-based cuticle [Term] id: FBbt:00007246 name: cuticle layer (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001001 ! chitin-based cuticle [Term] id: FBbt:00007247 name: chorionic layer (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000920 ! egg chorion [Term] id: FBbt:00007248 name: chorionic specialization (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000920 ! egg chorion [Term] id: FBbt:00007249 name: adult prothoracic chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Any chordotonal organ (FBbt:00005215) that is part of some adult prothoracic segment (FBbt:00003020)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: FBbt:00004248 ! prothoracic chordotonal organ (Drosophila) relationship: part_of FBbt:00003020 ! adult prothoracic segment (Drosophila) [Term] id: FBbt:00007250 name: inter-ommatidial cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell which is part of the boundary between ommatidia." [FBC:DOS] comment: The boundary between ommatidia is only a single cell wide, so each inter-ommatidial cell is not part of any one repeating unit of organization of the retina. However, in some sources, they are included as part of ommatidia, with the repeating unit referred to as the ommatidial core. is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: develops_from FBbt:00007369 ! inter-ommatidial precursor cell (Drosophila) relationship: part_of UBERON:0005388 ! photoreceptor array [Term] id: FBbt:00007251 name: rhabdomeric photoreceptor cell (Drosophila) namespace: fly_anatomy.ontology is_a: CL:0000210 ! photoreceptor cell [Term] id: FBbt:00007252 name: ciliated photoreceptor cell (Drosophila) namespace: fly_anatomy.ontology is_a: CL:0000210 ! photoreceptor cell [Term] id: FBbt:00007253 name: photoreceptor cell of Bolwig organ (Drosophila) namespace: fly_anatomy.ontology def: "Photoreceptor cell that is part of a Bolwig's organ. Unlike the photoreceptors of the adult eye, eyelet and ocellus, these photoreceptors do not contain rhabdomeres, but instead have apical surfaces which are folded into numerous microtubule containing lamellae." [FlyBase:FBrf0064481] synonym: "photoreceptor cell of Bolwig's organ" EXACT [] is_a: CL:0000210 ! photoreceptor cell is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00005805 ! Bolwig organ (Drosophila) [Term] id: FBbt:00007254 name: eo support cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell which makes part of the sheath that encloses the soma and dendrite of an eo-type sensory neuron." [FlyBase:FBrf0089570] synonym: "eo accessory cell" EXACT [] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00007255 name: abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Ventral monoscolopidial chordotonal organ of larval abdominal segments 1-7, innervated by a single neuron - vch2 (vchB)." [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vch1] subset: cur ! cur synonym: "vchB" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSnomenclature0.html] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) is_a: FBbt:00002663 ! monoscolopidial chordotonal organ (Drosophila) relationship: part_of FBbt:00007309 ! embryonic/larval ventral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00007256 name: vch2 neuron (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00002039 ! vch neuron (Drosophila) [Term] id: FBbt:00007257 name: abdominal vch2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of abdominal ventral monoscolopidial chordotonal organ vch2. Fasciculates in branch c of the segmental nerve, SNc (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vch2] synonym: "vchB neuron" BROAD [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#vch2] is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00007256 ! vch2 neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007258 name: abdominal 7 vch2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00007257 ! abdominal vch2 neuron (Drosophila) relationship: part_of FBbt:00007265 ! abdominal 7 ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007259 name: abdominal 2 vch2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00007257 ! abdominal vch2 neuron (Drosophila) relationship: part_of FBbt:00007266 ! abdominal 2 ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007260 name: abdominal 3 vch2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00007257 ! abdominal vch2 neuron (Drosophila) relationship: part_of FBbt:00007267 ! abdominal 3 ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007261 name: abdominal 4 vch2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00007257 ! abdominal vch2 neuron (Drosophila) relationship: part_of FBbt:00007268 ! abdominal 4 ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007262 name: abdominal 5 vch2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00007257 ! abdominal vch2 neuron (Drosophila) relationship: part_of FBbt:00007269 ! abdominal 5 ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007263 name: abdominal 6 vch2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00007257 ! abdominal vch2 neuron (Drosophila) relationship: part_of FBbt:00007270 ! abdominal 6 ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007264 name: abdominal 1 vch2 neuron (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00007257 ! abdominal vch2 neuron (Drosophila) relationship: part_of FBbt:00007271 ! abdominal 1 ventral monoscolopidial chordotonal organ vch2 (Drosophila) [Term] id: FBbt:00007265 name: abdominal 7 ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch2 (FBbt:00007255) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00007266 name: abdominal 2 ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch2 (FBbt:00007255) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00007267 name: abdominal 3 ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch2 (FBbt:00007255) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00007268 name: abdominal 4 ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch2 (FBbt:00007255) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00007269 name: abdominal 5 ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch2 (FBbt:00007255) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00007270 name: abdominal 6 ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch2 (FBbt:00007255) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00007271 name: abdominal 1 ventral monoscolopidial chordotonal organ vch2 (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal ventral monoscolopidial chordotonal organ vch2 (FBbt:00007255) that is part of some larval abdominal segment 1 (FBbt:00001748)." [FBC:auto_generated_definition] subset: cur ! cur is_a: FBbt:00007255 ! abdominal ventral monoscolopidial chordotonal organ vch2 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00007272 name: class I dendritic arborizing neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dendritic arborizing md sensory neuron with a long, dorsally directed primary dendrite which branches repeatedly along its length into antero-posteriorly oriented secondary dendrites. The dendrites are smooth and their branching pattern is relatively simple, with few side branches or varicosities." [FlyBase:FBrf0148966] synonym: "class I dendritic arborising neuron" EXACT [] synonym: "da class I" EXACT [] is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) [Term] id: FBbt:00007273 name: class II dendritic arborizing neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dendritic arborizing md sensory neuron with multiple long and sinuous dendrites. Their branching pattern is relatively symmetrical. Higher order branches are generally short stubs extending from the major trunks." [FlyBase:FBrf0148966] synonym: "class II da" EXACT [] synonym: "class II dendritic arborising neuron" EXACT [] is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) [Term] id: FBbt:00007274 name: class III dendritic arborizing neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dendritic arborizing md sensory neuron with long primary and secondary dendrites that have spiked protrusions along most of their length and at the ends of major branches." [FlyBase:FBrf0148966] synonym: "class III da" EXACT [] synonym: "class III dendritic arborising neuron" EXACT [] is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) [Term] id: FBbt:00007275 name: class IV dendritic arborizing neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dendritic arborizing md sensory neuron with a highly complex branching pattern that completely fills large regions of the body wall with its arbors. Each cell may have 800-900 terminal branches and more than 6 branch orders." [FlyBase:FBrf0148966] synonym: "class IV da" EXACT [] synonym: "class IV dendritic arborising neuron" EXACT [] is_a: FBbt:00005213 ! dendritic arborizing neuron (Drosophila) [Term] id: FBbt:00007276 name: anatomical group (Drosophila) namespace: fly_anatomy.ontology def: "Material anatomical entity generated by coordinated expression of the organism's own genome and whose component parts are not all connected to each other." [FBC:DOS] is_a: UBERON:0000465 ! material anatomical entity [Term] id: FBbt:00007278 name: non-connected functional system (Drosophila) namespace: fly_anatomy.ontology def: "An anatomical group whose component structures share a common function." [FBC:DOS] is_a: FBbt:00007276 ! anatomical group (Drosophila) [Term] id: FBbt:00007279 name: labial complex (Drosophila) namespace: fly_anatomy.ontology def: "Cluster of sense organs in the labial segment of the embryonic/larval head." [FlyBase:FBrf0089570] is_a: FBbt:00007316 ! sensory cluster (Drosophila) relationship: part_of FBbt:00001740 ! larval labial segment (Drosophila) [Term] id: FBbt:00007280 name: embryonic/larval head sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some larval head (FBbt:00001730)." [FBC:auto_generated_definition] synonym: "larval head sense organ" EXACT [] is_a: FBbt:00002639 ! embryonic/larval sense organ (Drosophila) relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00007281 name: epiphysis (Drosophila) namespace: fly_anatomy.ontology def: "Paired compound sense organ of the labral complex consisting of 6 sensilla: one tri-dendritic, 2 bi-dendritic and 3 mono-dendritic. Projections from the epiphysis generally, though not exclusively, target the contralateral subesophageal ganglion area 1 (Colomb et al., 2007)." [FlyBase:FBrf0089570, FlyBase:FBrf0147119, FlyBase:FBrf0201176] comment: Colomb et al., (2007) report that labral nerve projections pass through area 2 and into area 1 of the subesophageal ganglion. In the majority of cases they then target the contralateral area 2. An exception to this is one epiphysis fiber (which labels with Gr2a-Gal4) which targets inside area 4. synonym: "dorsal pharyngeal sensilla" RELATED [FlyBase:FBrf0147119] synonym: "dps" RELATED [FlyBase:FBrf0147119] synonym: "ep" RELATED [] synonym: "epiphysial sense organ" EXACT [] synonym: "labral sense organ" EXACT [] synonym: "labral sensory complex" RELATED [FlyBase:FBrf0089570] synonym: "lrso" RELATED [FlyBase:FBrf0089570] synonym: "lso" EXACT [] is_a: FBbt:00002649 ! embryonic/larval labral segment sense organ (Drosophila) is_a: FBbt:00007234 ! compound sense organ (Drosophila) relationship: part_of FBbt:00005617 ! labral sensory complex (Drosophila) [Term] id: FBbt:00007282 name: labial organ sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any external sensillum (FBbt:00007231) that is part of some embryonic/larval labial organ (FBbt:00002720)." [FBC:auto_generated_definition] is_a: FBbt:00002718 ! embryonic/larval labial segment sensillum (Drosophila) is_a: FBbt:00007231 ! external sensillum (Drosophila) relationship: part_of FBbt:00002720 ! embryonic/larval labial organ (Drosophila) [Term] id: FBbt:00007283 name: anatomical structure with acellular and cellular components namespace: fly_anatomy.ontology def: "An anatomical structure consisting of at least one acellular component and at least one cellular component." [FBC:DOS] is_obsolete: true [Term] id: FBbt:00007284 name: region of integument (Drosophila) namespace: fly_anatomy.ontology def: "A region of cuticle and its underlying epidermis." [FBC:DOS] is_a: FBbt:00007330 ! organ system subdivision (Drosophila) [Term] id: FBbt:00007285 name: segmental subdivision of integument (Drosophila) namespace: fly_anatomy.ontology def: "A segmental subdivision of the integument of the whole animal." [FBC:DOS] is_a: FBbt:00007284 ! region of integument (Drosophila) [Term] id: FBbt:00007286 name: integument of adult abdominal segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Region of integument that is part of adult abdominal segment 1." [FBC:DOS] is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00003025 ! adult abdominal segment 1 (Drosophila) [Term] id: FBbt:00007287 name: integumentary plate (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of integument largely defined by patterns of sclerotization and sutures." [FBC:DOS] is_a: FBbt:00007284 ! region of integument (Drosophila) [Term] id: FBbt:00007288 name: integumentary specialisation (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007284 ! region of integument (Drosophila) [Term] id: FBbt:00007289 name: tagmatic subdivision of integument (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007284 ! region of integument (Drosophila) [Term] id: FBbt:00007290 name: syncytium (Drosophila) namespace: fly_anatomy.ontology def: "A multi-nucleate cell having no internal boundaries between nuclei." [FBC:DOS] is_a: FBbt:00007002 ! cell (Drosophila) [Term] id: FBbt:00007291 name: region of integument defined by pigmentation pattern (Drosophila) namespace: fly_anatomy.ontology def: "A region of integument whose boundaries are defined by the boundaries of an element of a pigmentation pattern." [FBC:DOS] is_a: FBbt:00007284 ! region of integument (Drosophila) [Term] id: FBbt:00007292 name: sensory neuron of trichoid sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that is part of some sensillum trichodeum (FBbt:00005184)." [FBC:auto_generated_definition] is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00005184 ! sensillum trichodeum (Drosophila) [Term] id: FBbt:00007294 name: endocrine cell (Drosophila) namespace: fly_anatomy.ontology def: "Any cell (FBbt:00007002) that functions in (some) endocrine hormone secretion (GO:0060986)." [FBC:auto_generated_definition] is_a: FBbt:00007002 ! cell (Drosophila) is_a: FBbt:00007435 ! endocrine system component (Drosophila) [Term] id: FBbt:00007295 name: embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located in the ventral region on each side of each thoracic segment and of abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval thoracic/abdominal ventral sensory cluster" EXACT [] is_a: FBbt:00007316 ! sensory cluster (Drosophila) [Term] id: FBbt:00007296 name: embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located dorsally on each side of each thoracic segment and of abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval thoracic/abdominal dorsal sensory cluster" EXACT [] is_a: FBbt:00007316 ! sensory cluster (Drosophila) [Term] id: FBbt:00007297 name: embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located in the lateral region on each side of each thoracic segment and of abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval thoracic/abdominal lateral sensory cluster" EXACT [] is_a: FBbt:00007316 ! sensory cluster (Drosophila) [Term] id: FBbt:00007298 name: embryonic/larval mesothoracic dorsal sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located dorsally on each side of the mesothoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval mesothoracic dorsal sensory cluster" EXACT [] is_a: FBbt:00007398 ! embryonic/larval T2/3 dorsal sensory cluster (Drosophila) relationship: part_of FBbt:00007310 ! integument of larval mesothoracic segment (Drosophila) [Term] id: FBbt:00007299 name: embryonic/larval prothoracic dorsal sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located dorsally on each side of the prothoracic segment." [FlyBase:FBrf0089570] synonym: "larval prothoracic dorsal sensory cluster" EXACT [] is_a: FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) relationship: part_of FBbt:00007312 ! integument of larval prothoracic segment (Drosophila) [Term] id: FBbt:00007300 name: embryonic/larval metathoracic dorsal sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located dorsally on each side of the metathoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval metathoracic dorsal sensory cluster" EXACT [] is_a: FBbt:00007398 ! embryonic/larval T2/3 dorsal sensory cluster (Drosophila) relationship: part_of FBbt:00007311 ! integument of larval metathoracic segment (Drosophila) [Term] id: FBbt:00007301 name: embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located dorsally on each side of larval abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval dorsal sensory cluster of A1-7" EXACT [] is_a: FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) relationship: part_of FBbt:00007313 ! integument of larval segment A1-7 (Drosophila) [Term] id: FBbt:00007302 name: embryonic/larval prothoracic lateral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located laterally on each side of the prothoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval prothoracic lateral sensory cluster" EXACT [] is_a: FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) relationship: part_of FBbt:00007312 ! integument of larval prothoracic segment (Drosophila) [Term] id: FBbt:00007303 name: embryonic/larval mesothoracic lateral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located laterally on each side of the mesothoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval mesothoracic lateral sensory cluster" EXACT [] is_a: FBbt:00007399 ! embryonic/larval T2/3 lateral sensory cluster (Drosophila) relationship: part_of FBbt:00007310 ! integument of larval mesothoracic segment (Drosophila) [Term] id: FBbt:00007304 name: embryonic/larval metathoracic lateral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located laterally on each side of the metathoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval metathoracic lateral sensory cluster" EXACT [] is_a: FBbt:00007399 ! embryonic/larval T2/3 lateral sensory cluster (Drosophila) relationship: part_of FBbt:00007311 ! integument of larval metathoracic segment (Drosophila) [Term] id: FBbt:00007305 name: embryonic/larval lateral sensory cluster of A1-7 (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located laterally on each side of larval abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval lateral sensory cluster of A1-7" EXACT [] is_a: FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) relationship: part_of FBbt:00007313 ! integument of larval segment A1-7 (Drosophila) [Term] id: FBbt:00007306 name: embryonic/larval prothoracic ventral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located ventrally on each side of the prothoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval prothoracic ventral sensory cluster" EXACT [] is_a: FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) relationship: part_of FBbt:00007312 ! integument of larval prothoracic segment (Drosophila) [Term] id: FBbt:00007307 name: embryonic/larval mesothoracic ventral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located ventrally on each side of the mesothoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval mesothoracic ventral sensory cluster" EXACT [] is_a: FBbt:00007400 ! embryonic/larval T2/3 ventral sensory cluster (Drosophila) relationship: part_of FBbt:00007310 ! integument of larval mesothoracic segment (Drosophila) [Term] id: FBbt:00007308 name: embryonic/larval metathoracic ventral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located ventrally on each side of the metathoracic segment." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval metathoracic ventral sensory cluster" EXACT [] is_a: FBbt:00007400 ! embryonic/larval T2/3 ventral sensory cluster (Drosophila) relationship: part_of FBbt:00007311 ! integument of larval metathoracic segment (Drosophila) [Term] id: FBbt:00007309 name: embryonic/larval ventral sensory cluster of A1-7 (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located ventrally on each side of larval abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSorganization0.html] synonym: "larval ventral sensory cluster of A1-7" EXACT [] is_a: FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) relationship: part_of FBbt:00007313 ! integument of larval segment A1-7 (Drosophila) [Term] id: FBbt:00007310 name: integument of larval mesothoracic segment (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00001744 ! larval mesothoracic segment (Drosophila) [Term] id: FBbt:00007311 name: integument of larval metathoracic segment (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00001745 ! larval metathoracic segment (Drosophila) [Term] id: FBbt:00007312 name: integument of larval prothoracic segment (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00001743 ! larval prothoracic segment (Drosophila) [Term] id: FBbt:00007313 name: integument of larval segment A1-7 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007285 ! segmental subdivision of integument (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00007314 name: intersegmental nerve of A1-7 (Drosophila) namespace: fly_anatomy.ontology def: "Intersegmental nerve of larval segments A1-A7. After branching from the segmental nerve at the ventral edge of the ventral oblique muscles, this intersegmental nerve runs dorsally, anterior to the segmental nerve. Its branches include (from ventral to dorsal): two motor branches- ISNb and ISNd, which innervate the ventral oblique and ventral muscle fibers; and a sensory branch that penetrates the lateral transverse fibers to reach the lateral sensory cluster. Upon entering the dorsal muscle group, it splits to form an externally directed sensory branch connected to the dorsal sensory cluster, and an internally directed branch which carries efferent axons to the dorsal musculature." [FlyBase:FBrf0089570] synonym: "ISN" BROAD [FlyBase:FBrf0089570] is_a: FBbt:00002319 ! abdominal intersegmental nerve (Drosophila) [Term] id: FBbt:00007315 name: segmental nerve of A1-7 (Drosophila) namespace: fly_anatomy.ontology def: "Segmental nerve of segments A1-7. After branching from the intersegmental nerve at the ventral edge of the ventral oblique muscles, this nerve splits again: the thick, posteriorly directed SNc branch leaves the main trunk of the nerve (SNa) and splits into fine branches - 3 carrying axons from the ventral sensory cluster and a 4th carrying efferents to the ventral acute musculature. The SNa continues dorsally and carries efferent axons innervating the lateral transverse and oblique muscles and the axons of v'es2 and v'ch1." [FlyBase:FBrf0089570] is_a: FBbt:00002197 ! abdominal segmental nerve (Drosophila) [Term] id: FBbt:00007316 name: sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of sense organs in the integument or connected to it." [FBC:DOS] is_a: UBERON:0000477 ! anatomical cluster [Term] id: FBbt:00007317 name: adult oenocyte band (Drosophila) namespace: fly_anatomy.ontology def: "One cell thick band of oenocytes that lies under the surface of an adult abdominal segment." [FlyBase:FBrf0007735] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00003024 ! adult abdominal segment (Drosophila) [Term] id: FBbt:00007318 name: embryonic/larval head nerve (Drosophila) namespace: fly_anatomy.ontology def: "Any nerve (FBbt:00005105) that is part of some larval head (FBbt:00001730)." [FBC:auto_generated_definition] synonym: "larval head nerve" EXACT [] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00001730 ! larval head (Drosophila) [Term] id: FBbt:00007319 name: cardial cell (Drosophila) namespace: fly_anatomy.ontology def: "Contractile cell which forms the inner, contractile tube of the dorsal vessel." [FlyBase:FBrf0031012, FlyBase:FBrf0089570] synonym: "cardiomyocyte" EXACT [FlyBase:FBrf0151925] is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: develops_from CL:0000465 ! cardioblast (sensu Arthropoda) [Term] id: FBbt:00007320 name: embryonic/larval cardial cell (Drosophila) namespace: fly_anatomy.ontology def: "Contractile cell that forms the inner tube of the embryonic/larval dorsal vessel." [FlyBase:FBrf0089570, FlyBase:FBrf0151925] synonym: "cardiomyocyte" RELATED [FlyBase:FBrf0151925] is_a: FBbt:00007319 ! cardial cell (Drosophila) relationship: develops_from FBbt:00007321 ! embryonic cardioblast (Drosophila) [Term] id: FBbt:00007321 name: embryonic cardioblast (Drosophila) namespace: fly_anatomy.ontology def: "Precursor of cardial cells that make the inner, contractile layer of the dorsal vessel. These cells become morphologically distinct during stage 14, when they stretch, flatten and develop dorsally directed processes. During dorsal closure, they squeeze between the amnioserosa and epidermis. The dorsal vessel is formed when cardioblasts from the left and right side of the embryo meet at the midline and interdigitate dorsally and ventrally, with the medial surface forming the lumen." [FlyBase:FBrf0089570, FlyBase:FBrf0151925] is_a: CL:0000465 ! cardioblast (sensu Arthropoda) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00001665 ! dorsal vessel primordium (Drosophila) [Term] id: FBbt:00007322 name: embryonic heart cardioblast (Drosophila) namespace: fly_anatomy.ontology def: "Cardioblast which is a precursor of embryonic/larval heart cardial cell. During stage 14, these cells increase in size and elongate in the transverse axis to adopt a columnar shape." [FlyBase:FBrf0151925] is_a: FBbt:00007321 ! embryonic cardioblast (Drosophila) [Term] id: FBbt:00007323 name: embryonic aortic cardioblast (Drosophila) namespace: fly_anatomy.ontology def: "Cardioblast which is the precursor of cardial cells of the aorta. These cells become distinct from heart cardioblasts during stage 14: they remain small and cuboidal while the heart cardioblasts enlarge and elongate to become columnar." [FlyBase:FBrf0151925] is_a: FBbt:00007321 ! embryonic cardioblast (Drosophila) [Term] id: FBbt:00007324 name: embryonic ostial cardioblast (Drosophila) namespace: fly_anatomy.ontology def: "An embryonic heart cardioblast that forms the embryonic/larval ostia. These cardioblasts become distinct during late stages of embryogenesis. They are found in metamerically repeated clusters close to the sites of attachment of alary muscles." [FlyBase:FBrf0151925] is_a: FBbt:00007322 ! embryonic heart cardioblast (Drosophila) [Term] id: FBbt:00007325 name: epidermal cell (Drosophila) namespace: fly_anatomy.ontology def: "Any epithelial cell (FBbt:00000124) that is part of some epidermis (FBbt:00004993)." [FBC:auto_generated_definition] is_a: CL:0000066 ! epithelial cell relationship: part_of UBERON:0007376 ! outer epithelial layer [Term] id: FBbt:00007326 name: ISNb (Drosophila) namespace: fly_anatomy.ontology def: "A ventral branch of the intersegmental nerve of segments A1-7. Its branching point is dorsal to that of ISNd. It innervates various ventral somatic muscles including muscles 28, 14 and 12." [FlyBase:FBrf0089570, FlyBase:FBrf0193012] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00007314 ! intersegmental nerve of A1-7 (Drosophila) [Term] id: FBbt:00007327 name: ISNd (Drosophila) namespace: fly_anatomy.ontology def: "A ventral branch of the intersegmental nerve of segments A1-7. Its branching point is ventral to that of ISNb. It innervates various ventral somatic muscles." [FlyBase:FBrf0089570, FlyBase:FBrf0193012] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00007314 ! intersegmental nerve of A1-7 (Drosophila) [Term] id: FBbt:00007328 name: SNa (Drosophila) namespace: fly_anatomy.ontology def: "Dorsally directed branch of segmental nerve of larval A1-7. It innervates the lateral transverse and oblique muscles and carries axons of sensillum vc5 (also known as vp5) and lch1." [FlyBase:FBrf0089570] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00007315 ! segmental nerve of A1-7 (Drosophila) [Term] id: FBbt:00007329 name: SNc (Drosophila) namespace: fly_anatomy.ontology def: "Posteriorly directed ventral branch of segmental nerve of larval A1-7. It innervates the ventral acute musculature muscles and carries axons of the ventral sensory cluster." [FlyBase:FBrf0089570] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00007315 ! segmental nerve of A1-7 (Drosophila) [Term] id: FBbt:00007330 name: organ system subdivision (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100313 ! multicellular structure (Drosophila) disjoint_from: FBbt:00007229 ! cell cluster organ (Drosophila) disjoint_from: FBbt:00007230 ! compound cell cluster organ (Drosophila) [Term] id: FBbt:00007331 name: segmental subdivision of organ system (Drosophila) namespace: fly_anatomy.ontology def: "The part of some organism that is part of some specified segment." [FBC:DOS] is_a: FBbt:00007330 ! organ system subdivision (Drosophila) [Term] id: FBbt:00007332 name: tagmatic subdivision of organ system (Drosophila) namespace: fly_anatomy.ontology def: "The part of an organ system that is part of some specified tagma." [FBC:DOS] is_a: FBbt:00007330 ! organ system subdivision (Drosophila) [Term] id: FBbt:00007333 name: AC thermosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Thermosensory neuron located in the adult brain, anterior to the antennal lobe, that is necessary for warmth avoidance behavior. AC thermosensory neurons innervate antennal lobe glomerulus compartments VL2a and VL2p, the subesophageal ganglion and the superior-lateral protocerebrum." [FlyBase:FBrf0205189] synonym: "AC neuron" EXACT [FlyBase:FBrf0205189] synonym: "anterior cell" RELATED [FlyBase:FBrf0205189] is_a: FBbt:00005918 ! thermosensory neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007334 name: antennal segment 3 thermosensory organ (Drosophila) namespace: fly_anatomy.ontology def: "Thermosensory organ of antennal segment 3." [FlyBase:FBrf0088919, FlyBase:FBrf0200422] comment: Sayeed and Benzer, 1996, inferred the presence of thermosensory organ(s) on antennal segment 3 from the results of antennal segment ablation experiments. However, they did not identify which sensilla are responsible. These same experiments showed no effect on thermosensation when the arista alone was removed. is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00005160 ! thermosensitive sensory organ (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00007335 name: embryonic/larval intercalary segment sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Any sense organ (FBbt:00005155) that is part of some larval intercalary segment (FBbt:00001736)." [FBC:auto_generated_definition] synonym: "larval intercalary segment sense organ" EXACT [] is_a: FBbt:00002664 ! intercalary segment sense organ (Drosophila) is_a: FBbt:00007280 ! embryonic/larval head sense organ (Drosophila) relationship: part_of FBbt:00001736 ! larval intercalary segment (Drosophila) [Term] id: FBbt:00007336 name: abdominal nerve to the ovary (Drosophila) namespace: fly_anatomy.ontology def: "Paired nerve that branches from the abdominal nerve trunk and projects to the junction of the ovaries and the lateral oviduct where it branches repeatedly. Some branches radiate anteriorly across the peritoneal sheath, on which they terminate, mainly in the anterior two thirds of the ovary. Varicosities occur along these branches as well as at their ends. These branches do not penetrate the peritoneal sheath. Other branches innervate the lateral oviduct and the upper portion of the common oviduct. Two types of branches innervate the common oviduct - wandering fibers similar to those on the peritoneal sheath, and branches running circularly, parallel to the underlying myofibers." [FlyBase:FBrf0193596] synonym: "AbNvOv" EXACT [FlyBase:FBrf0193596] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00007337 name: abdominal nerve to the uterus (Drosophila) namespace: fly_anatomy.ontology def: "Paired nerve that branches from the abdominal nerve trunk and projects to the uterus where it innervated both the extrinsic muscles and the circular muscle fibers. One branch projects to the inner layers of the uterus." [FlyBase:FBrf0193596] synonym: "AbNvUt" EXACT [FlyBase:FBrf0193596] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00003023 ! adult abdomen (Drosophila) [Term] id: FBbt:00007338 name: lateral oviduct circular muscle (Drosophila) namespace: fly_anatomy.ontology def: "A striated array of circular muscle fibers forming an almost continuous sheet around the lateral oviduct." [FlyBase:FBrf0193596] is_a: FBbt:00003527 ! adult circular muscle (Drosophila) [Term] id: FBbt:00007339 name: serotonergic neuron SP1 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired serotonergic neuron of both larval and adult brain. During larval stages only two are present - each cell body is located in the antero-dorsal cortex and its axon follows a posterior path within the same hemisphere as the cell body. In the adult brain, a cluster of 3 is present in each hemisphere, with cell bodies located in the cortex overlying the anterior medial protocerebrum. Their axons enter the anterior neuropil." [FlyBase:FBrf0048551] comment: The name P1 is more commonly used to refer to an unrelated neuron (FBbt:00001367) that contributes to the ventral nerve cord in the larva. synonym: "SP1" EXACT [FlyBase:FBrf0048551] synonym: "supraesophageal ganglion neuron 1" EXACT [FlyBase:FBrf0048551] is_a: FBbt:00100359 ! serotonergic SP neuron (Drosophila) relationship: part_of UBERON:0000955 ! brain [Term] id: FBbt:00007340 name: haltere trichome (Drosophila) namespace: fly_anatomy.ontology def: "Trichome/hair of the haltere. Compared to wing hairs, they are smaller and present at a higher density." [FlyBase:FBrf0051925] subset: cur ! cur synonym: "haltere hair" RELATED [] is_a: FBbt:00004979 ! trichome (Drosophila) relationship: part_of UBERON:0000987 ! haltere [Term] id: FBbt:00007341 name: LP2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell bodies are located in 2 pairs of clusters (a and b) in the adult brain in the cortex of optic peduncle, adjacent to the medulla layer. These cells are born during metamorphosis." [FlyBase:FBrf0048551] subset: cur ! cur synonym: "lamina cluster 1" RELATED [] is_a: CL:0000850 ! serotonergic neuron relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007342 name: thoracic neuroblast b (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast located in two pairs, lateral to the M neuroblast, on the ventral border of each thoracic neuromere of the larva." [FlyBase:FBrf0047185] is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00007343 name: thoracic neuroblast d (Drosophila) namespace: fly_anatomy.ontology def: "A neuroblast that is part of one of the three bilateral pairs of deep (rather than superficial) neuroblasts, located rostral to the single medial neuroblast in each larval thoracic segment." [FlyBase:FBrf0047185] is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00007344 name: somatic stem cell (Drosophila) namespace: fly_anatomy.ontology def: "Stem cell that is a progenitor of somatic cells." [FBC:DOS] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) is_a: FBbt:00007014 ! stem cell (Drosophila) [Term] id: FBbt:00007345 name: antennal coeloconic sensillum C2 (Drosophila) namespace: fly_anatomy.ontology def: "Coeloconic sensillum of antennal segment 3 that is innervated by two olfactory receptor neuron dendrites." [FlyBase:FBrf0128642] is_a: FBbt:00004177 ! sensillum coeloconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007346 name: antennal coeloconic sensillum C3 (Drosophila) namespace: fly_anatomy.ontology def: "Coeloconic sensillum of antennal segment 3 that is innervated by three olfactory receptor neuron dendrites." [FlyBase:FBrf0128642] is_a: FBbt:00004177 ! sensillum coeloconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007347 name: sensillar lymph space (Drosophila) namespace: fly_anatomy.ontology def: "Cuticle enclosed space within a sensillum that contain sensillar lymph." [FBC:DOS] is_a: UBERON:0000464 ! anatomical space [Term] id: FBbt:00007348 name: antennal sensillum trichodeum T1 (Drosophila) namespace: fly_anatomy.ontology def: "Antennal segment 3 sensillum trichodeum innervated by a single ORN dendrite." [FlyBase:FBrf0128642] is_a: FBbt:00004173 ! sensillum trichodeum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007349 name: antennal sensillum trichodeum T2 (Drosophila) namespace: fly_anatomy.ontology def: "Antennal segment 3 sensillum trichodeum innervated by the dendrites of two olfactory receptor neurons." [FlyBase:FBrf0128642] is_a: FBbt:00004173 ! sensillum trichodeum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007350 name: antennal sensillum trichodeum T3 (Drosophila) namespace: fly_anatomy.ontology def: "Antennal segment 3 sensillum trichodeum innervated by the dendrites of three olfactory receptor neurons." [FlyBase:FBrf0128642] is_a: FBbt:00004173 ! sensillum trichodeum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007352 name: antennal olfactory receptor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Odorant receptor neuron (ORN) whose dendrite transduces signals from some antennal sensillum. The axons of these neurons fasciculate in the antennal nerve and innervate the antennal lobe." [FlyBase:FBrf0051437] subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "antennal ORN" EXACT [] is_a: FBbt:00007386 ! adult olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0000972 ! antenna [Term] id: FBbt:00007353 name: maxillary palp olfactory receptor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Odorant receptor neuron (ORN) whose dendrite transduces signals from some maxillary palp basiconic sensillum. The axons of these neurons fasciculate in the labial nerve and the antenno-subesophageal tract (AST) and innervate the antennal lobe." [FlyBase:FBrf0051437] subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "maxillary palp ORN" EXACT [] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007386 ! adult olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00004159 ! maxillary palp sensillum basiconicum (Drosophila) [Term] id: FBbt:00007354 name: antenno-subesophageal tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract linking the ventro-posterior corner of the antennal lobe to the anterior subesophageal ganglion." [FlyBase:FBrf0051437] subset: cur ! cur synonym: "AST" RELATED BRAIN_NAME_ABV [FBC:BrainName] synonym: "antennal lobe-SEG tract" EXACT [] synonym: "antennal lobe-SOG tract" EXACT [FBC:BrainName] synonym: "antennal lobe-subesophageal tract" EXACT [FBC:SPR] synonym: "antenno-suboesophageal tract" EXACT [FlyBase:FBrf0051437] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) [Term] id: FBbt:00007355 name: basiconic sensillum LB-I (Drosophila) namespace: fly_anatomy.ontology def: "Large olfactory sensillum basiconicum of antennal segment 3, with a pore size of about 50nm and a pore density of about 19 pores per square micrometer, innervated by 2 highly branched ORN dendrites." [FlyBase:FBrf0128642] comment: Likely to correspond to ab2 or ab3, but not clear which. synonym: "sensillum basiconicum LB-I" EXACT [FlyBase:FBrf0128642] is_a: FBbt:00004175 ! large sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007356 name: basiconic sensillum LB-II2 (Drosophila) namespace: fly_anatomy.ontology def: "Large olfactory sensillum basiconicum of antennal segment 3, with a pore size of about 100nm and a pore density of about 30 pores per square micrometer, innervated by 2 highly branched ORN dendrites." [FlyBase:FBrf0128642] comment: Likely to correspond to ab2 or ab3, but not clear which. synonym: "sensillum basiconicum LB-II2" EXACT [FlyBase:FBrf0128642] is_a: FBbt:00004175 ! large sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007357 name: basiconic sensillum LB-II4 (Drosophila) namespace: fly_anatomy.ontology def: "Large olfactory sensillum basiconicum of antennal segment 3, with a pore size of about 100nm and a pore density of about 30 pores per square micrometer, innervated by 4 highly branched ORN dendrites." [FlyBase:FBrf0128642] synonym: "sensillum basiconicum LB-II4" EXACT [FlyBase:FBrf0128642] is_a: FBbt:00004175 ! large sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00007358 name: sensillum intermedia (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum with external sensory structure whose morphology is in between that of a sensillum trichodeum and a sensillum basiconicum." [FlyBase:FBrf0128642] is_a: FBbt:00007232 ! eo-type sensillum (Drosophila) [Term] id: FBbt:00007359 name: sensillum intermedia of antennal segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory sensillum of antennal segment 3. It resembles antennal segment 3 trichoid sensillum in cuticular morphology, pore structure and dimensions, but, like antennal segment 3 basiconic sensilla, it lacks a basal drum and is innervated by branched dendrites from 2-3 ORNs." [FlyBase:FBrf0128642, FlyBase:FBrf0141649, FlyBase:FBrf0187104] comment: Morphology is consistent with olfactory function, as is the expression and localization of odorant binding proteins (Shanbhag et al., 2001; Shanbhag et al., 2005). subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00004172 ! antennal segment 3 sensillum (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) is_a: FBbt:00007358 ! sensillum intermedia (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00007360 name: antennal lobe glomerulus DA4 lateral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most compartmental subdivision of antennal lobe glomerulus DA4." [FlyBase:FBrf0187305] synonym: "DA4l" RELATED [FlyBase:FBrf0187305] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003935 ! antennal lobe glomerulus DA4 (Drosophila) [Term] id: FBbt:00007361 name: antennal lobe glomerulus DA4 medial compartment (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most compartmental subdivision of antennal lobe glomerulus DA4." [FlyBase:FBrf0187305] synonym: "DA4m" RELATED [FlyBase:FBrf0187305] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003935 ! antennal lobe glomerulus DA4 (Drosophila) [Term] id: FBbt:00007362 name: glomerulus compartment (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of a glomerulus, partially delimited from the glomerulus of which it is a part, by a thin neuropil glial sheath." [FlyBase:FBrf0107836] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of UBERON:0001047 ! neural glomerulus [Term] id: FBbt:00007363 name: antennal lobe glomerulus VA1 ventral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Ventral most compartment of antennal lobe glomerulus VA1." [FlyBase:FBrf0187305] synonym: "VA1v" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003936 ! antennal lobe glomerulus VA1 (Drosophila) [Term] id: FBbt:00007364 name: octopaminergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some octopamine (CHEBI:17134)." [FBC:auto_generated_definition] is_a: FBbt:00007368 ! aminergic neuron (Drosophila) [Term] id: FBbt:00007365 name: antennal lobe glomerulus VM5 ventral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Ventral compartment of the larval glomerulus VM5." [FlyBase:FBrf0187305] synonym: "VM5v" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003949 ! antennal lobe glomerulus VM5 (Drosophila) [Term] id: FBbt:00007366 name: antennal lobe glomerulus VC4 (Drosophila) namespace: fly_anatomy.ontology def: "Ventro-central antennal lobe glomerulus of the adult antennal lobe." [FlyBase:FBrf0187305] is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007367 name: histaminergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some histamine (CHEBI:18295)." [FBC:auto_generated_definition] is_a: FBbt:00007368 ! aminergic neuron (Drosophila) [Term] id: FBbt:00007368 name: aminergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some amine (CHEBI:32952)." [FBC:auto_generated_definition] is_a: CL:0000540 ! neuron [Term] id: FBbt:00007369 name: inter-ommatidial precursor cell (Drosophila) namespace: fly_anatomy.ontology def: "Precursor of the inter-ommatidial cells (secondary and tertiary pigment cells). From 10 hours after puparium formation (APF), these cells are part of an unstructured pool of undifferentiated cells surrounding each developing ommatidial core. Around 20-23 hours APF, the primary precursors leave this pool and become part of the ommatidia. Following this, the inter-ommatidial precursors and inter-ommatidial bristle precursors develop into an organized lattice surrounding the ommatidia." [FlyBase:FBrf0103328] comment: DISAMBIGUATION: There are at least two uses of this term. It is usually used, as here, only to refer to precursors of the secondary and tertiary pigment cells (e.g. Miller and Cagan, 1998). But it is also sometimes used to also refer to precursors of primary pigment cells (e.g. Larson et al., 2008), even though primary pigment cells are not inter-ommatidial cells. synonym: "IPC" EXACT [FlyBase:FBrf0103328] synonym: "interommatidial precursor cell" EXACT [] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) [Term] id: FBbt:00007370 name: primary pigment cell precursor (Drosophila) namespace: fly_anatomy.ontology def: "Precursor of the primary pigment cells of the retina. From 10 hours after puparium formation, these cells are part of an unstructured pool of undifferentiated cells surrounding each developing ommatidial core. Around 20-23 hours APF, the primary pigment cell precursors leave this pool and become part of the ommatidia." [FlyBase:FBrf0103328] comment: DISSAMBIGUATION: The term inter-ommatidial precursor cell is sometimes used to refer to precursors of primary pigment cells as well as secondary and tertiary pigment cells (e.g. Larson et al., 2008), even though primary pigment cells are not inter-ommatidial cells. This is not the case here. is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) [Term] id: FBbt:00007371 name: retinal pigment cell (Drosophila) namespace: fly_anatomy.ontology def: "A cell of the retina containing screening pigments that functions to screen photoreceptors from light leaking from adjacent ommatidia." [ISBN:978-0-521-57048-0] is_a: CL:0001658 ! visual pigment cell (sensu Nematoda and Protostomia) is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of UBERON:0005388 ! photoreceptor array [Term] id: FBbt:00007372 name: retinal pigment granule (Drosophila) namespace: fly_anatomy.ontology def: "Pigment granule found in retinal cells." [FlyBase:FBrf0017931] is_a: FBbt:00004234 ! pigment granule (Drosophila) relationship: part_of UBERON:0005388 ! photoreceptor array [Term] id: FBbt:00007373 name: internal sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] is_a: UBERON:0000020 ! sense organ [Term] id: FBbt:00007374 name: ganglion mother cell GMC7-3a (Drosophila) namespace: fly_anatomy.ontology def: "First born ganglion mother cell born of neuroblast NB7-3." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/73%20description.html] comment: In the wildtype neuroblast NB7-3, only GMC 7-3a and its progeny are both hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent ganglion mother cells do not express hb (Isshiki et al., 2001). synonym: "GMC-1" RELATED [FlyBase:FBrf0138252] synonym: "ganglion mother cell GMC7-3a" EXACT [] is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001426 ! neuroblast NB7-3 (Drosophila) [Term] id: FBbt:00007375 name: ganglion mother cell GMC7-3b (Drosophila) namespace: fly_anatomy.ontology def: "Second born ganglion mother cell of neuroblast NB7-3." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/73%20description.html] comment: In the wildtype neuroblast NB7-3, only GMC 7-3a and its progeny are both hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent ganglion mother cells do not express hb (Isshiki et al., 2001). synonym: "GMC-2" RELATED [FlyBase:FBrf0138252] synonym: "ganglion mother cell GMC 7-3b" EXACT [] is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001426 ! neuroblast NB7-3 (Drosophila) [Term] id: FBbt:00007376 name: ganglion mother cell GMC7-3c (Drosophila) namespace: fly_anatomy.ontology def: "Third born ganglion mother cell of neuroblast NB7-3." [FlyBase:FBrf0064795, FlyBase:FBrf0090460, FlyBase:FBrf0138252, http://www.neuro.uoregon.edu/doelab/lineages/texts/73%20description.html] comment: In the wildtype neuroblast NB7-3, only GMC 7-3a and its progeny are both hb (FBgn0001180) and Kr (FBgn0001325) positive. Subsequent ganglion mother cells do not express hb (Isshiki et al., 2001). synonym: "GMC-3" RELATED [FlyBase:FBrf0138252] synonym: "ganglion mother cell GMC 7-3c" EXACT [] is_a: CL:0000469 ! ganglion mother cell relationship: develops_from FBbt:00001426 ! neuroblast NB7-3 (Drosophila) [Term] id: FBbt:00007377 name: embryonic/larval tritocerebral commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure connecting left and right halves of the embryonic/larval tritocerebrum." [FlyBase:FBrf0174355] comment: Might better be considered first commissure of the VNC? is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00001962 ! embryonic/larval tritocerebrum (Drosophila) [Term] id: FBbt:00007378 name: embryonic/larval protocerebral commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure connecting left and right halves of the embryonic/larval protocerebrum." [FlyBase:FBrf0174355] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00007379 name: frontal connective (Drosophila) namespace: fly_anatomy.ontology def: "Connective that connects the larval frontal ganglion with the larval brain. It receives lateral projections from the frontal ganglion." [FlyBase:FBrf0089570] is_a: FBbt:00005104 ! connective (Drosophila) relationship: part_of FBbt:00005096 ! stomatogastric nervous system (Drosophila) [Term] id: FBbt:00007380 name: spinule (Drosophila) namespace: fly_anatomy.ontology def: "Small, sharply pointed, non-innervated cuticular process." [ISBN:978-3-11-014898-5] is_a: FBbt:00007245 ! cuticular specialization (Drosophila) [Term] id: FBbt:00007381 name: spinule of maxillary palpus (Drosophila) namespace: fly_anatomy.ontology def: "Small, curved, pointed, non-innervated cuticular process of the maxillary palpus. These spinules are distributed throughout the surface of the palps." [FlyBase:FBrf0091407] is_a: FBbt:00007380 ! spinule (Drosophila) relationship: part_of FBbt:00004546 ! maxillary palpus (Drosophila) [Term] id: FBbt:00007383 name: uniglomerular antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron whose dendrite innervates only a single glomerulus in either one or both antennal lobes." [FBC:DOS] synonym: "uniglomerular PN" RELATED [] is_a: FBbt:00007422 ! antennal lobe projection neuron (Drosophila) [Term] id: FBbt:00007384 name: multiglomerular antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron whose dendritic arbor(s) innervate multiple glomeruli in one or both antennal lobes." [FBC:DOS] synonym: "multiglomerular PN" RELATED [] synonym: "polyglomerular antennal lobe projection neuron" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00007422 ! antennal lobe projection neuron (Drosophila) disjoint_from: FBbt:00007383 ! uniglomerular antennal lobe projection neuron (Drosophila) [Term] id: FBbt:00007385 name: calyx of adult mushroom body (Drosophila) namespace: fly_anatomy.ontology def: "Mushroom body calyx of the mature adult mushroom body." [FBC:SPR] is_a: FBbt:00003685 ! mushroom body calyx (Drosophila) relationship: part_of FBbt:00003684 ! adult mushroom body (Drosophila) [Term] id: FBbt:00007386 name: adult olfactory receptor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any olfactory receptor neuron (FBbt:00005926) that is part of some adult (FBbt:00003004)." [FBC:auto_generated_definition] synonym: "adult ORN" RELATED [] synonym: "adult odorant receptor neuron" EXACT [] is_a: FBbt:00005926 ! olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00007387 name: uniglomerular projection neuron vPN (Drosophila) namespace: fly_anatomy.ontology def: "Uniglomerular projection neuron descended from the ventral AL neuroblast." [FBC:DOS] synonym: "uniglomerular vPN" EXACT [] is_a: FBbt:00007383 ! uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067351 ! antennal lobe projection neuron vPN (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) [Term] id: FBbt:00007388 name: embryonic/larval olfactory receptor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any olfactory receptor neuron (FBbt:00005926) that is part of some larva (FBbt:00001727)." [FBC:auto_generated_definition] synonym: "larval ORN" EXACT [] synonym: "larval OSN" EXACT [] synonym: "larval odorant receptor neuron" EXACT [] synonym: "larval olfacory sensory neuron" EXACT [] synonym: "larval olfactory neuron" BROAD [] synonym: "larval olfactory receptor neuron" EXACT [] is_a: FBbt:00005926 ! olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00007389 name: adult olfactory receptor neuron Or85b/98b (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or85b (FBgn0037590) and Or98b (FBgn0039582). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM5d, and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM5d. Its dendrite transduces signals from antennal basiconic sensillum ab3." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] comment: Evidence for innervation of VM5d comes from Or reporter construct expression. Not validated by in situ hybridization (Couto et al., 2005). synonym: "ORN (Or85b/98b?)" EXACT [FlyBrain_NDB:10425] synonym: "ORN ab3B" EXACT [FlyBase:FBrf0179238] synonym: "adult ORN Or85b" EXACT [] synonym: "adult ORN Or98b" EXACT [] synonym: "odorant receptor neuron Or85b" EXACT [] synonym: "odorant receptor neuron Or98b" EXACT [] synonym: "odorant receptor neuron VM5d" RELATED [] xref: FlyBrain_NDB:10425 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067024 ! antennal basiconic sensillum ab3 (Drosophila) [Term] id: FBbt:00007390 name: local interneuron of adult antennal lobe (Drosophila) namespace: fly_anatomy.ontology def: "A local interneuron that is part of an adult antennal lobe." [FlyBase:FBrf0051437, FlyBase:FBrf0205814] subset: cur ! cur synonym: "LI" EXACT [FlyBrain_NDB:10373] synonym: "olfactory LN" RELATED [FlyBase:FBrf0207001] xref: FlyBrain_NDB:10373 is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007391 name: antennal lobe glomerulus VM5 dorsal compartment (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal compartment of antennal lobe glomerulus VM5." [FlyBase:FBrf0051437, FlyBase:FBrf0211729, PMID:18535862] subset: cur ! cur synonym: "antennal lobe glomerulus VM5d" EXACT [] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003949 ! antennal lobe glomerulus VM5 (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007392 name: projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "An interneuron that projects from some primary sensory neuropil (e.g. the antennal lobe) to a higher brain neuropil." [FBC:DOS] is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) relationship: part_of UBERON:0002606 ! neuropil [Term] id: FBbt:00007393 name: vLN (Drosophila) namespace: fly_anatomy.ontology def: "Local interneuron of the adult antennal lobe, from the ventral AL neuroblast lineage." [FlyBase:FBrf0205814] is_a: FBbt:00007390 ! local interneuron of adult antennal lobe (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007394 name: lLN (Drosophila) namespace: fly_anatomy.ontology def: "Local interneuron of the adult antennal lobe, from the lateral AL neuroblast lineage." [FlyBase:FBrf0205814] is_a: FBbt:00007390 ! local interneuron of adult antennal lobe (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007395 name: type A lLN (Drosophila) namespace: fly_anatomy.ontology def: "An Ipsilateral local interneuron of the adult antennal lobe that is derived from the lateral antennal lobe neuroblast and whose terminal arbors do not form glomerular shapes." [FlyBase:FBrf0205814] is_a: FBbt:00007394 ! lLN (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007396 name: type B lLN (Drosophila) namespace: fly_anatomy.ontology def: "A local interneuron of the adult antennal lobe that is derived from the lateral antennal lobe neuroblast and whose terminal arbors form glomerular shapes. Many of these neurons are oligo-glomerular - making connections with only subsets of glomeruli." [FlyBase:FBrf0205814] is_a: FBbt:00007394 ! lLN (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007398 name: embryonic/larval T2/3 dorsal sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located dorsally on each side of the larval mesothoracic and metathoracic segments." [FlyBase:FBrf0089570] synonym: "larval T2/3 dorsal sensory cluster" EXACT [] is_a: FBbt:00007296 ! embryonic/larval thoracic/abdominal dorsal sensory cluster (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) relationship: part_of FBbt:00005393 ! embryonic/larval integumentary system (Drosophila) [Term] id: FBbt:00007399 name: embryonic/larval T2/3 lateral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located laterally on each side of the larval mesothoracic and metathoracic segments." [FlyBase:FBrf0089570] synonym: "larval T2/3 lateral sensory cluster" EXACT [] is_a: FBbt:00007297 ! embryonic/larval thoracic/abdominal lateral sensory cluster (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) relationship: part_of FBbt:00005393 ! embryonic/larval integumentary system (Drosophila) [Term] id: FBbt:00007400 name: embryonic/larval T2/3 ventral sensory cluster (Drosophila) namespace: fly_anatomy.ontology def: "A paired cluster of sense organs and multi-dendritic sensory neurons located ventrally on each side of the larval mesothoracic and metathoracic segments." [FlyBase:FBrf0089570] synonym: "larval T2/3 ventral sensory cluster" EXACT [] is_a: FBbt:00007295 ! embryonic/larval thoracic/abdominal ventral sensory cluster (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) relationship: part_of FBbt:00005393 ! embryonic/larval integumentary system (Drosophila) [Term] id: FBbt:00007401 name: adult antennal lobe (Drosophila) namespace: fly_anatomy.ontology def: "The adult antennal lobe is a bilaterally paired synaptic neuropil domain of the deuterocerebrum lying in front of the protocerebral synaptic neuropil domains. It is divided into approximately 50 glomeruli and is clearly separated from adjacent neuropil domains by an extensive glial sheath. The two antennal lobes are connected by the antennal commissure and receive olfactory receptor neuron axons from the antennal nerve and subesophageal tract. It is also connected to the antenno-cerebral tracts and the broad root." [FBC:BrainName, FlyBase:FBrf0051437, FlyBase:FBrf0107836, VFB_vol:00007401, http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem1.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "AL" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "adult olfactory lobe" EXACT [] is_a: FBbt:00003924 ! antennal lobe (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) [Term] id: FBbt:00007402 name: GABAergic adult AL LN (Drosophila) namespace: fly_anatomy.ontology def: "A GABAergic local interneuron of the adult antennal lobe. The majority of the local interneurons of the adult antennal lobe fall into this class." [FlyBase:FBrf0191055] comment: Based on GABA expression, approximately 80% of the local interneurons of the adult antennal lobe are GABAergic (Wilson and Laurent, 2005). synonym: "GABAergic local interneuron of the larval antennal lobe" EXACT [] is_a: FBbt:00007228 ! GABAergic neuron (Drosophila) is_a: FBbt:00007390 ! local interneuron of adult antennal lobe (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007403 name: cholinergic adult AL LN (Drosophila) namespace: fly_anatomy.ontology def: "Cholinergic local interneuron of the adult antennal lobe. The minority of local interneurons of the adult antennal lobe fall into this class." [FlyBase:FBrf0192172, FlyBase:FBrf0207001] comment: Inferred to be cholinergic based on choline acetyltransferase expression detected by reporter (Das et al., 2008) or antibody (Shang et al., 2007). synonym: "cholinergic local interneuron of the larval antennal lobe" EXACT [] is_a: FBbt:00007173 ! cholinergic neuron (Drosophila) is_a: FBbt:00007390 ! local interneuron of adult antennal lobe (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007404 name: oligo-glomerular lLN (Drosophila) namespace: fly_anatomy.ontology def: "Local interneuron of the adult antennal lobe that is derived from the lateral AL neuroblast lineage and that innervates only some of the adult antennal lobe glomeruli." [FlyBase:FBrf0207001] is_a: FBbt:00007394 ! lLN (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007405 name: CSD interneuron (Drosophila) namespace: fly_anatomy.ontology def: "A large serotonergic interneuron whose cell body is located close to the antennal lobe, whose dendrites innervate the antennal lobe in the same hemisphere as the cell body and whose axons innervate the contralateral antennal lobe and higher brain centers including the mushroom body cortex, the dorsal horn and the posterior superior protocerebrum. There are only two CSD interneurons per brain (one cell body per hemisphere)." [FlyBase:FBrf0195231, FlyBase:FBrf0205432] comment: Axons versus dendrites distinguished on the basis of Nod and dlg1 localization (Roy et al., 2007). Note, there is good evidence that this neuron class is extensively conserved throughout the insects (Dacks et al., 2006). synonym: "CSDn" EXACT [FlyBase:FBrf0205432] synonym: "contralaterally innervating serotonin immunoreactive deutocerebral interneuron" EXACT [FlyBase:FBrf0205432] is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00007392 ! projection neuron (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00007406 name: tergotrochanteral muscle motor neuron (Drosophila) namespace: fly_anatomy.ontology def: "Motor neuron that innervates the tergotrochanteral muscle and is electrically synapsed to the giant fiber neuron. It functions in jump response escape behavior." [FlyBase:FBrf0085744] synonym: "TTMn" EXACT [FlyBase:FBrf0085744] is_a: FBbt:00005123 ! motor neuron (Drosophila) relationship: part_of FBbt:00004059 ! mesothoracic neuromere (Drosophila) [Term] id: FBbt:00007407 name: great commissural interneuron (Drosophila) namespace: fly_anatomy.ontology def: "Any interneuron (FBbt:00005125) that fasciculates with some great commissure (FBbt:00007080)." [FBC:auto_generated_definition] is_a: CL:0000099 ! interneuron [Term] id: FBbt:00007408 name: peripherally synapsing interneuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0085744] is_a: CL:0000099 ! interneuron [Term] id: FBbt:00007409 name: leg taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Any chaeta (FBbt:00005177) that is part of some leg (FBbt:00004640) and that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] is_a: FBbt:00004246 ! leg sensillum (Drosophila) is_a: FBbt:00005178 ! taste bristle (Drosophila) relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00007411 name: large labellar taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Largest taste bristle subtype of the labellum: each bristle is around 35 micrometres long. These bristles are located in the region between the intermediate bristles on the lobe periphery and the medial-ventrally located short taste bristles." [FlyBase:FBrf0137194] synonym: "lTB" EXACT [FlyBase:FBrf0137194] synonym: "long labellar taste bristle" EXACT [FlyBase:FBrf0137194] is_a: FBbt:00004162 ! labellar taste bristle (Drosophila) relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00007412 name: intermediate labellar taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Intermediate sized taste bristle of the labellum: each bristle is around 25 micrometers long. These bristles are located dorsally, on the labellar lobe periphery." [FlyBase:FBrf0137194] synonym: "iTB" EXACT [FlyBase:FBrf0137194] is_a: FBbt:00004162 ! labellar taste bristle (Drosophila) relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00007413 name: short labellar taste bristle (Drosophila) namespace: fly_anatomy.ontology def: "Shortest subclass of taste bristle of the labellum: each bristle is around 15 micrometres long and is curved in the medial direction. These bristles are located in the most medial and ventral regions of the labellum." [FlyBase:FBrf0137194] synonym: "sTB" EXACT [FlyBase:FBrf0137194] is_a: FBbt:00004162 ! labellar taste bristle (Drosophila) relationship: part_of FBbt:00004531 ! labellum (Drosophila) [Term] id: FBbt:00007414 name: adult multiglomerular projection neuron vPN (Drosophila) namespace: fly_anatomy.ontology def: "Adult antennal lobe projection neuron that is derived from the ventral AL neuroblast lineage and that innervates multiple antennal lobe glomeruli. The dendritic arbors of these neurons do not form glomerular shapes (Lai et al., 2008). All of these neurons have an axon that innervates the lateral horn." [FlyBase:FBrf0146917, FlyBase:FBrf0203179, FlyBase:FBrf0205814] subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "multi vPN" EXACT [FlyBase:FBrf0203179] synonym: "multiglomerular projection neuron vPN" EXACT [] synonym: "multiglomerular vPN" EXACT [] synonym: "vmulti" RELATED [FlyBase:FBrf0203179] is_a: FBbt:00007437 ! adult antennal lobe projection neuron vPN (Drosophila) is_a: FBbt:00007441 ! adult multiglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007415 name: multiglomerular projection neuron lPN (Drosophila) namespace: fly_anatomy.ontology def: "Adult antennal lobe projection neuron that is derived from the lateral AL neuroblast lineage and that innervates multiple antennal lobe glomeruli. The dendritic arbors of these neurons do not outline individual glomeruli and their axons project through the inner antenno-cerebral tract to various higher brain centers such as the posterior-lateral protocerebrum and the superior protocerebrum." [FlyBase:FBrf0205814] subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "atypical multiglomerular PN" RELATED [FlyBase:FBrf0205814] synonym: "multiglomerular lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007441 ! adult multiglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007416 name: GABAergic type A lLN (Drosophila) namespace: fly_anatomy.ontology def: "GABAergic local interneuron of the adult antennal lobe that is derived from the lateral AL neuroblast and that arborizes throughout the antennal lobe without outlining individual glomeruli." [FlyBase:FBrf0205814] synonym: "GABAergic type A lateral local neuron" EXACT [] is_a: FBbt:00007395 ! type A lLN (Drosophila) is_a: FBbt:00007402 ! GABAergic adult AL LN (Drosophila) [Term] id: FBbt:00007417 name: GABAergic local interneuron of larval antennal lobe (Drosophila) namespace: fly_anatomy.ontology def: "GABAergic local interneuron that connects glomeruli within the larval antennal lobe. Most (perhaps all) of local interneurons of the larval antennal lobe are GABAergic (Python and Stocker, 2002)." [FlyBase:FBrf0152159] subset: larval_OF ! larval olfactory system is_a: FBbt:00007226 ! local interneuron of larval antennal lobe (Drosophila) is_a: FBbt:00007228 ! GABAergic neuron (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00007418 name: outer optic anlage neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Any neuroblast (FBbt:00005146) that is part of some larval outer optic anlage (FBbt:00001933)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "outer anlage neuroblast" EXACT [] is_a: FBbt:00001332 ! embryonic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001933 ! larval outer optic anlage (Drosophila) [Term] id: FBbt:00007419 name: antennal basiconic sensillum TB (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory basiconic sensillum of antennal segment 3 with about the same length as the large ab sensilla, but thinner and with longitudinal rows of pores like those found in the small ab sensilla." [FlyBase:FBrf0128642, PMID:18535862] comment: Believed to be a class of olfactory sensillum based on morphology (Shanbhag et al., 1999). synonym: "TB" RELATED [] synonym: "thin antennal basiconic sensillum" EXACT [FlyBase:FBrf0128642] is_a: FBbt:00004174 ! sensillum basiconicum of antennal segment 3 (Drosophila) is_a: FBbt:00005158 ! olfactory sensory organ (Drosophila) relationship: part_of FBbt:00004515 ! third segment of antenna (Drosophila) [Term] id: FBbt:00007420 name: antennal basiconic sensillum TB-2 (Drosophila) namespace: fly_anatomy.ontology def: "Thin ab basiconic sensillum innervated by 2 olfactory receptor neurons (ORNs). In some subtypes the innervating dendrites are highly branched, while in others are innervated by unbranched, hollow dendrites." [FlyBase:FBrf0128642] is_a: FBbt:00007419 ! antennal basiconic sensillum TB (Drosophila) [Term] id: FBbt:00007421 name: antennal basiconic sensillum TB-4 (Drosophila) namespace: fly_anatomy.ontology def: "Thin ab basiconic sensillum innervated by the branched dendrites of 4 olfactory receptor neurons (ORNs)." [FlyBase:FBrf0128642] is_a: FBbt:00007419 ! antennal basiconic sensillum TB (Drosophila) [Term] id: FBbt:00007422 name: antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron whose dendrite innervates the antennal lobe (larval or adult) and whose axon innervates some higher brain centre (generally the mushroom body calyx and/or lateral horn)." [FBC:DOS] synonym: "olfactory projection neuron" RELATED [FlyBase:FBrf0183938] is_a: FBbt:00007392 ! projection neuron (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00007423 name: lamina furrow (Drosophila) namespace: fly_anatomy.ontology def: "A region of the lamina anlage marked by a fold. Like the morphogenetic furrow in the developing eye, this fold progresses from posterior to anterior, reflecting posterior to anterior progression of differentiation." [FlyBase:FBrf0054817, ISBN:978-3-540-42590-8] is_a: FBbt:00007424 ! epithelial furrow (Drosophila) relationship: part_of FBbt:00001939 ! lamina anlage (Drosophila) [Term] id: FBbt:00007424 name: epithelial furrow (Drosophila) namespace: fly_anatomy.ontology def: "A region of an epithelium that folds inwards from the epithelial plane to form a furrow." [FBC:DOS] is_a: UBERON:0000483 ! epithelium [Term] id: FBbt:00007426 name: ipsilateral tract (Drosophila) namespace: fly_anatomy.ontology def: "A tract of the central nervous system that does not cross the midline." [FBC:DOS] is_a: UBERON:0001018 ! axon tract [Term] id: FBbt:00007427 name: posterior optic commissure (Drosophila) namespace: fly_anatomy.ontology def: "A large midline-crossing commissure connecting the medulla of each brain hemisphere, passing dorsal to the esophageal foramen (Helfrich-Forster and Homberg, 1993)." [FBC:BrainName, FlyBase:FBrf0065419, ISBN:978-3-540-07343-7] comment: Following the proposals of BrainName, the posterior optic commissure is so called (rather than the posterior optic tract) because it connects both hemispheres. synonym: "POC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "POT" EXACT [] synonym: "posterior optic tract" EXACT [] is_a: UBERON:0001020 ! commissure [Term] id: FBbt:00007428 name: s-LNv neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of the period-expressing LNv cluster, with a small cell body and generally located more dorsally than the l-LNv neurons (Helfrich-Forster, 1998). There are 5 cells present in each cluster, all except one of which express Pdf (FBgn0023178)." [FlyBase:FBrf0193849] synonym: "s-LNv" EXACT [] synonym: "s-vLN neuron" EXACT [FlyBase:FBrf0209505] synonym: "sLNv" EXACT [] synonym: "small LNv" EXACT [] is_a: FBbt:00004044 ! LN period neuron (Drosophila) [Term] id: FBbt:00007429 name: DN1a neuron (Drosophila) namespace: fly_anatomy.ontology def: "Anteriorly located member of the Period-expressing DN1 cluster. There are two DN1a neurons per cluster located between 15 and 30 micrometers anterior to the DN1p cluster." [FlyBase:FBrf0152101, FlyBase:FBrf0195358] synonym: "DN1a" RELATED [] synonym: "anteror DN1 neuron" RELATED [] is_a: FBbt:00003629 ! DN1 neuron (Drosophila) [Term] id: FBbt:00007430 name: DN1p neuron (Drosophila) namespace: fly_anatomy.ontology def: "Posteriorly located member of the Period-expressing DN1 cluster that expresses glass (FBgn0004618). There are 14-17 DN1p cells per cluster. Many, perhaps all cells in this cluster project through the dorsal fusion commissure (Helfrich-Forster et al., 2007)." [FlyBase:FBrf0152101, FlyBase:FBrf0195358] synonym: "DN1p" EXACT [] synonym: "posterior DN1 neuron" EXACT [] is_a: FBbt:00003629 ! DN1 neuron (Drosophila) [Term] id: FBbt:00007431 name: DN3a neuron (Drosophila) namespace: fly_anatomy.ontology def: "DN (dorsal Period-expressing neuron of adult brain) with a medium-sized cell body, located in the lateral-most cluster of per expressing DN neurons. There are two cells per hemisphere, each of which project anteriorly to the aMe (Helfrich-Forster et al., 2007)." [FlyBase:FBrf0193849] synonym: "adult dorsal neuron-3a." RELATED [] is_a: FBbt:00003628 ! adult DN period neuron (Drosophila) [Term] id: FBbt:00007432 name: LP neuron (Drosophila) namespace: fly_anatomy.ontology def: "Period-expressing neuron located in a cluster of 3-4 cells in the lateral central brain, medial to the LNd cluster and near the posterior of the brain (Shafer et al., 2006; Helfrich-Forster, 2005)." [FlyBase:FBrf0183981, FlyBase:FBrf0187530, FlyBase:FBrf0195358] synonym: "LPN" RELATED [] synonym: "lateral posterior neuron" RELATED [] is_a: FBbt:00006048 ! pacemaker neuron (Drosophila) [Term] id: FBbt:00007433 name: Pdf negative s-LNV neuron (Drosophila) namespace: fly_anatomy.ontology def: "s-LNv neuron that does not express Pdf (FBgn0023178). There is only one of these per ventral cluster of LN period neurons. Like the Pdf expressing s-LNv neurons, this cell projects to the accessory medulla and towards the dorsal protocerebrum (Helfrich-Forster et al., 2007)." [FlyBase:FBrf0191052, FlyBase:FBrf0193849] comment: Helfrich-Forster et al., (2007) did not succeed in mapping the dorsal extent of the dorsal projection of this neuron. synonym: "PDH negative s-LNV neuron" RELATED [] synonym: "PDH-negative s-LNV neuron" RELATED [] synonym: "Pdf-negative s-LNv" EXACT [FlyBase:FBrf0193849] is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) is_a: FBbt:00007428 ! s-LNv neuron (Drosophila) [Term] id: FBbt:00007434 name: dorsal fusion commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure of the dorsal protocerebrum that carries the projections of a number of pacemaker neurons: DN1, DN2 and LNd." [FlyBase:FBrf0193849] is_a: UBERON:0001020 ! commissure [Term] id: FBbt:00007435 name: endocrine system component (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007293 def: "Any material anatomical entity (FBbt:00007016) that functions in (some) endocrine hormone secretion (GO:0060986)." [FBC:auto_generated_definition] subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "endocrine organ" EXACT [] is_a: UBERON:0000465 ! material anatomical entity relationship: part_of UBERON:0000949 ! endocrine system [Term] id: FBbt:00007436 name: endocrine neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that functions in (some) endocrine hormone secretion (GO:0060986)." [FBC:auto_generated_definition] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00007294 ! endocrine cell (Drosophila) [Term] id: FBbt:00007437 name: adult antennal lobe projection neuron vPN (Drosophila) namespace: fly_anatomy.ontology def: "Any antennal lobe projection neuron (FBbt:00007422) that is part of some adult brain (FBbt:00003624) and that develops from some ventral AL neuroblast (FBbt:00067348)." [FBC:auto_generated_definition] synonym: "adult vPN" EXACT [] is_a: FBbt:00067123 ! adult antennal lobe projection neuron (Drosophila) is_a: FBbt:00067351 ! antennal lobe projection neuron vPN (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007438 name: adult antennal lobe projection neuron adPN (Drosophila) namespace: fly_anatomy.ontology def: "An adult antennal lobe projection neuron that is derived from the antero-dorsal antennal lobe neuroblast. All of these neurons have axons that fasciculate with the inner antenno-cerebral tract (iACT) and innervate the lateral horn." [FlyBase:FBrf0141667, FlyBase:FBrf0146917, FlyBase:FBrf0205814, FlyBase:FBrf0211729] comment: Generalizations about fasciculation and innervation patterns are safe here because the entire lineage has been analyzed. See Yu et al., 2010 for details. subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "adult adPN" EXACT [] synonym: "adult projection neuron adPN" EXACT [] is_a: FBbt:00067349 ! antennal lobe projection neuron adPN (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007439 name: adult antennal lobe projection neuron lPN (Drosophila) namespace: fly_anatomy.ontology def: "Any antennal lobe projection neuron (FBbt:00007422) that is part of some adult brain (FBbt:00003624) and that develops from some lateral AL neuroblast (FBbt:00067347)." [FBC:auto_generated_definition] synonym: "adult lPN" EXACT [] synonym: "adult projection neuron lPN" EXACT [] is_a: FBbt:00067123 ! adult antennal lobe projection neuron (Drosophila) is_a: FBbt:00067362 ! antennal lobe projection neuron lPN (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007440 name: adult uniglomerular antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any uniglomerular antennal lobe projection neuron (FBbt:00007383) that is part of some adult brain (FBbt:00003624)." [FBC:auto_generated_definition] is_a: FBbt:00007383 ! uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067123 ! adult antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007441 name: adult multiglomerular antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any multiglomerular antennal lobe projection neuron (FBbt:00007384) that is part of some adult brain (FBbt:00003624)." [FBC:auto_generated_definition] is_a: FBbt:00007384 ! multiglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067123 ! adult antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007442 name: antennal lobe glomerulus DL6 (Drosophila) namespace: fly_anatomy.ontology def: "A small, densely innervated glomerulus located just anterior to DL1." [FlyBase:FBrf0183938] comment: This glomerulus is visible with Nc82 staining (Marin et al,, 2005), but was not identified by Laissue et al., 1999 (FBrf0107836). subset: cur ! cur is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00007443 name: adult antennal lobe projection neuron DL6 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL6. This neuron is born from the ninth division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0183938, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "DL6 adPN" EXACT [] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007444 name: adult antennal lobe projection neuron VL1 vPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ventral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VL1. Its axon exhibits a diffuse and highly complex pattern of arborization along the ventral border of the lateral horn." [FlyBase:FBrf0146917] synonym: "ORN (VL1)" EXACT [FlyBrain_NDB:10434] synonym: "VL1 vPN" EXACT [] xref: FlyBrain_NDB:10434 is_a: FBbt:00007445 ! adult uniglomerular antennal lobe projection neuron vPN (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007445 name: adult uniglomerular antennal lobe projection neuron vPN (Drosophila) namespace: fly_anatomy.ontology def: "Adult, uniglomerular antennal lobe projection neuron descended from the ventral antennal lobe (AL) neuroblast. All neurons in this class fasciculate with the middle antenno-cerebral tract (mACT) (Lai et al., 2008; Jefferis et al., 2007) and innervates the lateral horn (Jefferis et al., 2007)." [FlyBase:FBrf0203179, FlyBase:FBrf0205814] subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "adult uniglomerular vPN" EXACT [] is_a: FBbt:00007387 ! uniglomerular projection neuron vPN (Drosophila) is_a: FBbt:00007437 ! adult antennal lobe projection neuron vPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007446 name: adult antennal lobe projection neuron VA4 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral antennal lobe neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA4." [FlyBase:FBrf0209355] subset: olfactory_system_draft ! adult olfactory system model synonym: "VA4 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007447 name: adult antennal lobe projection neuron VA6 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA6. This neuron is born during the eighth division of the antero-dorsal antennal neuroblast during embryogenesis." [FlyBase:FBrf0183938] subset: olfactory_system_draft ! adult olfactory system model synonym: "VA6 adPN" EXACT [] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007448 name: adult antennal lobe projection neuron VA7l adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA7l. This neuron is born from the 13th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0183938, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "VA7l adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007449 name: adult antennal lobe projection neuron VC2 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral antennal lobe neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VC2." [FBC:GJ, FlyBase:FBrf0209355] comment: Existence confirmed by Greg Jefferis (personal communication). subset: olfactory_system_draft ! adult olfactory system model synonym: "VC2 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007450 name: adult antennal lobe projection neuron VL2p adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage (embryonic born) whose dendrites innervate only antennal lobe glomerulus VL2p. This neuron is born in the third division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0211729] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (VL2p)" EXACT [FlyBrain_NDB:10436] synonym: "VL2p adPN" EXACT [] xref: FlyBrain_NDB:10436 is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007451 name: adult antennal lobe projection neuron VL2p lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral antennal lobe neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VL2p." [FBC:GJ] comment: Existence confirmed by Greg Jefferis (personal communication). subset: olfactory_system_draft ! adult olfactory system model synonym: "VL2p lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007452 name: adult antennal lobe projection neuron VM1 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral antennal lobe neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM1." [FBC:GJ] comment: Existence confirmed by Greg Jefferis (personal communication). subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (VM1)" EXACT [FlyBrain_NDB:10437] synonym: "VM1 lPN" EXACT [] xref: FlyBrain_NDB:10437 is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007453 name: adult pedunculus (Drosophila) namespace: fly_anatomy.ontology def: "Mushroom body pedunculus of the adult mushroom body." [FlyBase:FBrf0105215] synonym: "adult mushroom body pedunculus" EXACT [] is_a: FBbt:00003687 ! mushroom body pedunculus (Drosophila) relationship: part_of FBbt:00003684 ! adult mushroom body (Drosophila) [Term] id: FBbt:00007454 name: adult antennal lobe projection neuron VM7v adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM7v (also known as glomerulus 1). Neurons of this class derive from the ninth larval division of the antero-dorsal AL neuroblast." [FlyBase:FBrf0146917, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002.n1 adPN has been renamed to VM7v to be consistent with the change of glomerulus name from glomerulus 1 to glomerulus VM7v. subset: olfactory_system_draft ! adult olfactory system model synonym: "1 adPN" EXACT [FlyBase:FBrf0146917] synonym: "VM7v adPN" EXACT [] synonym: "adult antennal lobe projection neuron 1 adPN" EXACT [FlyBase:FBrf0146917] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007455 name: rhabdomere of eye photoreceptor cell (Drosophila) namespace: fly_anatomy.ontology def: "Any rhabdomere (FBbt:00004212) that is part of some eye photoreceptor cell (FBbt:00006009)." [FBC:auto_generated_definition] is_a: FBbt:00004212 ! rhabdomere (Drosophila) relationship: part_of FBbt:00006009 ! eye photoreceptor cell (Drosophila) [Term] id: FBbt:00007456 name: persistent antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "An adult antennal lobe projection neuron that develops by remodelling of larval antennal lobe projection neuron. Both axons and dendrites of these neurons are extensively remodelled during metamorphosis." [FlyBase:FBrf0183938] synonym: "PPN" EXACT [FlyBase:FBrf0183938] synonym: "persisent projection neuron" BROAD [] is_a: FBbt:00067123 ! adult antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00007225 ! embryonic/larval antennal lobe projection neuron (Drosophila) [Term] id: FBbt:00007457 name: prothoracic gland innervating neuron PG-LP (Drosophila) namespace: fly_anatomy.ontology def: "Larval neurosecretory neuron that secretes prothoracicotropic hormone (FBgn0013323; McBrayer et al., 2007) and innervates the prothoracic gland. The somata of these neurons (2 per hemisphere) lie in the cortex of the lateral protocerebrum. Their axons, which form extensive collaterals in the brain, run along the anterior brain at the cortex/neuropil interface before traversing the midline and entering the contralateral nervus corporis cardiaci through which they travel to the ring gland. Within the ring gland these axons bypass the corpora cardiaca to innervate the prothoracic gland where they arborize extensively." [FlyBase:FBrf0134726, FlyBase:FBrf0201640] comment: McBrayer et al., (2007) used enhancer trap expression to confirm that their PG neurons are identical to the PG-LP neurons identified by Siegmund and Korge (2001). synonym: "PG neuron" EXACT [FlyBase:FBrf0201640] synonym: "PG-LP" EXACT [FlyBase:FBrf0134726] synonym: "Prothoracic gland innervating neurosecretory neuron of the lateral protocerebrum" EXACT [FlyBase:FBrf0134726] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00007458 ! prothoracic gland innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007458 name: prothoracic gland innervating neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that has synaptic terminals in some prothoracic gland (FBbt:00001724)." [FBC:auto_generated_definition] synonym: "PG neuron" RELATED [] is_a: CL:0000540 ! neuron [Term] id: FBbt:00007459 name: embryonic/larval corpus allatum innervating neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that is part of some embryonic/larval nervous system (FBbt:00001911) and that has synaptic terminals in some embryonic/larval corpus allatum (FBbt:00001725)." [FBC:auto_generated_definition] synonym: "larval CA neuron" RELATED [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007460 name: embryonic/larval corpus cardiacum innervating neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that is part of some embryonic/larval nervous system (FBbt:00001911) and that has synaptic terminals in some embryonic/larval corpus cardiacum (FBbt:00001726)." [FBC:auto_generated_definition] synonym: "larval CC neuron" RELATED [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007461 name: corpus allatum innervating neuron CA-LP 1 (Drosophila) namespace: fly_anatomy.ontology def: "Larval neurosecretory neuron whose soma is located in the cortex of the antero-dorsal region of the lateral protocerebrum and whose axon innervates the corpora allatum. This axon runs caudally on a slightly curved path from to the nervus corporis cardiaci (NCC). It emerges from the NCC at the ring gland and passes the copora cardiaca and the lateral limb of the prothoracic gland before innervating the corpora allatum. There is only one bilaterally symmetric pair of these cells per animal." [FlyBase:FBrf0134726] comment: Recorded as neurosecretory because Siegmund and Korge (2001) say so. Assume this is implied from its innervation of the corpus allatum. synonym: "CA-LP 1" EXACT [FlyBase:FBrf0134726] synonym: "Corpus allatum innervating neurosecretory neuron of the lateral protocerebrum 1" EXACT [FlyBase:FBrf0134726] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00007459 ! embryonic/larval corpus allatum innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007462 name: corpus allatum innervating neuron CA-LP 2 (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired, larval neurosecretory neuron whose soma is located in the cortex of the lateral protocerebrum and whose axon innervates the corpora allatum. Their axons follow an anterior path towards the mushroom bodies and the soma of CA-LP 1, where they split. One branch follows the same path as the axon of corpus allatum neuron CA-LP 1 to the corpus allatum via the nervus corporis cardiaci (NCC). The other branch runs towards the midline. There are only two of these cells per hemisphere." [FlyBase:FBrf0134726] comment: Recorded as neurosecretory because Siegmund and Korge (2001) say so. Assume this is implied from its innervation of the corpus allatum. synonym: "CA-LP 2" EXACT [FlyBase:FBrf0134726] synonym: "Corpus allatum innervating neurosecretory neuron of the lateral protocerebrum 2" EXACT [FlyBase:FBrf0134726] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00007459 ! embryonic/larval corpus allatum innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007463 name: corpus cardiacum innervating neuron CC/A-PI (Drosophila) namespace: fly_anatomy.ontology def: "Larval neurosecretory neuron whose soma is located in the pars-intercerebralis and whose axon innervates the corpus cardiacum and the aorta. They each project caudally along the midline. At a distance of about 50 micrometres from the soma, the projection splits: one branch follows the midline down to the subesophageal ganglion, and the second branch crosses the midline, enters the contralateral nervus corporis cardiaci (NCC), and arborizes in the corpus cardiacum, extending further along the aorta." [FlyBase:FBrf0134726] comment: Recorded as neurosecretory because Siegmund and Korge (2001) say so. Assume this is implied from its innervation of the corpus cardiacum. synonym: "CC/A-PI" EXACT [FlyBase:FBrf0134726] synonym: "corpus cardiacum innervating neurosecretory neuron of the pars intercerebralis" EXACT [FlyBase:FBrf0134726] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00007460 ! embryonic/larval corpus cardiacum innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007464 name: corpus cardiacum innervating neuron CC/A-PI 2 (Drosophila) namespace: fly_anatomy.ontology def: "Larval neurosecretory neuron that is not octopaminergic and whose soma is located in the pars-intercerebralis and whose axon innervates the corpus cardiacum and the aorta. There are two of these per animal." [FlyBase:FBrf0134726] is_a: FBbt:00007463 ! corpus cardiacum innervating neuron CC/A-PI (Drosophila) [Term] id: FBbt:00007465 name: corpus cardiacum innervating neuron CC-LP (Drosophila) namespace: fly_anatomy.ontology def: "Larval neurosecretory neuron whose soma is located in the cortex of the lateral protocerebrum and whose axon innervates the corpus cardiacum. The soma of these neurons are located in 2 clusters of seven (one per hemisphere), between CA-LP1 an CA-LP2." [FlyBase:FBrf0134726] comment: Recorded as neurosecretory because Siegmund and Korge (2001) say so. Assume this is implied from its innervation of the corpus cardiacum. synonym: "CC-LP" EXACT [FlyBase:FBrf0134726] synonym: "corpus cardiacum innervating neurosecretory neuron of the lateral protocerebrum" EXACT [FlyBase:FBrf0134726] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00007460 ! embryonic/larval corpus cardiacum innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007466 name: serotonergic corpus cardiacum innervating neuron CC/A (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron that fasciculates with the nervus corporis cardiaci and arborizes in the corpus cardiacum and along the aorta." [FlyBase:FBrf0134726] comment: The origin of these fibers is most likely the ventricular ganglion (Siegmund and Korge, 2001). is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00007460 ! embryonic/larval corpus cardiacum innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007467 name: corpus cardiacum innervating neuron CC/A-PI 1 (Drosophila) namespace: fly_anatomy.ontology def: "Octopaminergic larval neurosecretory neuron whose soma is located in the pars-intercerebralis and whose axon innervates the corpus cardiacum and the aorta. There are six of these per animal." [FlyBase:FBrf0134726] comment: Believed to be octopaminergic on the basis of tryamine beta hydroxylase expression (Siegmund and Korge, 2001). is_a: FBbt:00007364 ! octopaminergic neuron (Drosophila) is_a: FBbt:00007463 ! corpus cardiacum innervating neuron CC/A-PI (Drosophila) [Term] id: FBbt:00007468 name: corpus cardiacum innervating neuron CC-MS 1 (Drosophila) namespace: fly_anatomy.ontology def: "Larval neurosecretory neuron whose soma is located in the cortex of the medial subesophageal ganglion, directly below the esophagus and whose axon innervates the corpus cardiacum." [FlyBase:FBrf0134726] comment: Recorded as neurosecretory because Siegmund and Korge (2001) say so. Assume this is implied from its innervation of the corpus cardiacum. synonym: "CC-MS 1" EXACT [FlyBase:FBrf0134726] synonym: "corpus cardiacum innervating neurosecretory neuron of the medial subesophageal ganglion 1" EXACT [FlyBase:FBrf0134726] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00007460 ! embryonic/larval corpus cardiacum innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007469 name: corpus cardiacum innervating neuron CC-MS 2 (Drosophila) namespace: fly_anatomy.ontology def: "Larval neurosecretory neuron whose soma is located in the posteriorly in the cortex of the medial subesophageal ganglion and whose axon innervates the corpus cardiacum (CC). Its axon runs on an outwardly curved path toward the dorsal mid-line, crosses it, and joins the axons of the CC-MS 1 on their way to the CC." [FlyBase:FBrf0134726] comment: Recorded as neurosecretory because Siegmund and Korge (2001) say so. Assume this is implied from its innervation of the corpus cardiacum. synonym: "CC-MS 2" EXACT [FlyBase:FBrf0134726] synonym: "corpus cardiacum innervating neurosecretory neuron of the medial subesophageal ganglion 2" EXACT [FlyBase:FBrf0134726] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00007460 ! embryonic/larval corpus cardiacum innervating neuron (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007470 name: abdominal tracheal primordium 8 (Drosophila) namespace: fly_anatomy.ontology def: "Any tracheal primordium (FBbt:00005037) that is part of some abdominal segment 8 (FBbt:00000029)." [FBC:auto_generated_definition] subset: cur ! cur synonym: "tracheal placode 10" RELATED [] is_a: FBbt:00000189 ! abdominal tracheal primordium (Drosophila) relationship: part_of FBbt:00000029 ! abdominal segment 8 (Drosophila) [Term] id: FBbt:00007471 name: secondary trachea (Drosophila) namespace: fly_anatomy.ontology def: "Trachea formed by a single tracheolar cell folded back on itself and making an auto-cellular junction to form a tube. Secondary trachea first begin to form in the embryo during stage 13." [FlyBase:FBrf0087684] synonym: "secondary branch" EXACT [FlyBase:FBrf0087684] is_a: UBERON:0003127 ! open tracheal system trachea relationship: part_of FBbt:00005048 ! tracheolar cell (Drosophila) [Term] id: FBbt:00007472 name: primary trachea (Drosophila) namespace: fly_anatomy.ontology def: "Trachea that is two or more cells (tracheocytes) in circumference. During embryogenesis, primary trachea are formed from the tracheal primordium between stages 11 and 15." [FlyBase:FBrf0087684] synonym: "primary branch" EXACT [FlyBase:FBrf0087684] is_a: UBERON:0003127 ! open tracheal system trachea [Term] id: FBbt:00007473 name: dorsal anastomosis 1 (Drosophila) namespace: fly_anatomy.ontology def: "Any embryonic/larval dorsal anastomosis (FBbt:00000276) that is part of some tracheal metamere 1 (FBbt:00005026) and that connected to some embryonic/larval dorsal branch 2 (FBbt:00000267)." [FBC:auto_generated_definition, FlyBase:FBrf0064787] subset: cur ! cur synonym: "DA1" EXACT [FlyBase:FBrf0064787] is_a: FBbt:00000276 ! embryonic/larval dorsal anastomosis (Drosophila) is_a: FBbt:00000392 ! tracheal branch of Tr1 (Drosophila) relationship: part_of FBbt:00005026 ! tracheal metamere 1 (Drosophila) [Term] id: FBbt:00007475 name: adult antennal lobe projection neuron DP1l adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DP1l." [FlyBase:FBrf0205814] comment: 'DP1l adPN' is not listed in Yu et al., 2010 (FBrf0211729), which claims to account for all adPNs. Probably equivalent to one of those identified by Yu et al., but with disagreement over target glomerulus name. subset: olfactory_system_draft ! adult olfactory system model synonym: "DP1l adPN" EXACT [FlyBase:FBrf0205814] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007476 name: adult antennal lobe projection neuron VC1 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral antennal lobe neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VC1." [FlyBase:FBrf0209355] comment: Existence confirmed by Greg Jefferis (personal communication). subset: olfactory_system_draft ! adult olfactory system model synonym: "VC1 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00007477 name: air sac primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium of an air sac (a large, air filled sac of the adult tracheal system)." [FBC:DOS, FlyBase:FBrf0151893] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00007478 name: air sac tracheoblast (Drosophila) namespace: fly_anatomy.ontology def: "Cell that is a precursor of cells of some adult tracheal air sac." [FlyBase:FBrf0151893] is_a: FBbt:00005042 ! imaginal tracheoblast (Drosophila) relationship: part_of FBbt:00007477 ! air sac primordium (Drosophila) [Term] id: FBbt:00007479 name: air sac primordium tip cell (Drosophila) namespace: fly_anatomy.ontology def: "Air sac tracheoblast at the tip (leading edge) of the developing air sac primordium. It forms extensive filopodia." [FlyBase:FBrf0151893, FlyBase:FBrf0209956] is_a: FBbt:00007478 ! air sac tracheoblast (Drosophila) [Term] id: FBbt:00007480 name: air sac primordium stalk cell (Drosophila) namespace: fly_anatomy.ontology def: "Air sac tracheoblast that is not at the tip or leading edge of an air sac primordium." [FlyBase:FBrf0151893, FlyBase:FBrf0209956] is_a: FBbt:00007478 ! air sac tracheoblast (Drosophila) [Term] id: FBbt:00007481 name: dorsal air sac primordium stalk cell (Drosophila) namespace: fly_anatomy.ontology def: "Air sac tracheoblast that is not at the tip or leading edge of an air sac primordium." [FlyBase:FBrf0151893, FlyBase:FBrf0209956] is_a: FBbt:00005920 ! air sac tracheoblast of dorsal air sac primordium (Drosophila) is_a: FBbt:00007480 ! air sac primordium stalk cell (Drosophila) relationship: part_of FBbt:00007135 ! dorsal air sac primordium (Drosophila) [Term] id: FBbt:00007482 name: inner-middle antenno-cerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract that connects the antennal lobe to the mushroom body calyx and whose trajectory runs between the inner and outer antenno-cerebral tracts." [FlyBase:FBrf0205263] comment: Perhaps too minor to be considered a tract? Tanaka et al., 2008, only identify two neuron classes that follow this path. synonym: "imACT" EXACT [FlyBase:FBrf0205263] synonym: "medial-mediolateral antenno-protocerebral tract" EXACT [FBC:BrainName] synonym: "mmlAPT projection neuron" EXACT [FBC:BrainName] is_a: FBbt:00100099 ! adult antenno-cerebral tract (Drosophila) [Term] id: FBbt:00007483 name: inner-middle antenno-cerebral tract multi-glomerular projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Multiglomerular antennal lobe projection neuron that fasciculates with the inner-medial antenno-cerebral tract. The cell body is located lateral to the antennal lobe, and projects between the inner antenno-cerebral tract and the mlAPT, before turning laterally at the level of the fan-shaped body towards the pedunculus. The axon enters the pedunculus where it turns posteriorly and bifurcates in the mushroom body calyx. One branch terminates in the calyx whilst the other further bifurcates and terminates in the lateral horn. Other branches innervate the subesophageal ganglion." [FlyBase:FBrf0051437, FlyBase:FBrf0205263] comment: Tanaka et al., (2008) describe imACT projection neurons that innervate the following antennal lobe glomeruli: DC1, DL2v, DL5, DM1, DM2, DM3, DM4, DP1lm, V, VC1, VC3l, VL1, VM7 and VP1-3, though this is based on unpublished data. synonym: "imACT PN" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00007384 ! multiglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00100225 ! inner-middle antenno-cerebral tract projection neuron (Drosophila) [Term] id: FBbt:00007484 name: mushroom body intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "An interneuron that innervates only the mushroom body." [FBC:DOS] is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) [Term] id: FBbt:00007485 name: nervous system of embryonic/larval thorax (Drosophila) namespace: fly_anatomy.ontology def: "The portion of the embryonic/larval nervous system that is part of the thorax." [FBC:DOS] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007486 name: nervous system of embryonic/larval abdomen (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00007332 ! tagmatic subdivision of organ system (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00007487 name: fan-shaped body layer 1 (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most layer of the fan-shaped body." [FlyBase:FBrf0049409] synonym: "fan shaped body layer 1" EXACT [] is_a: FBbt:00040035 ! fan-shaped body layer (Drosophila) [Term] id: FBbt:00007488 name: fan-shaped body layer 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second most ventral layer of the fan-shaped body." [FlyBase:FBrf0049409] synonym: "fan shaped body layer 2" EXACT [] is_a: FBbt:00040035 ! fan-shaped body layer (Drosophila) [Term] id: FBbt:00007489 name: dorsal air sac primordium tip cell (Drosophila) namespace: fly_anatomy.ontology def: "Air sac tracheoblast at the tip (leading edge) of the developing air sac primordium. It forms extensive filopodia." [FlyBase:FBrf0151893, FlyBase:FBrf0209956] is_a: FBbt:00005920 ! air sac tracheoblast of dorsal air sac primordium (Drosophila) is_a: FBbt:00007479 ! air sac primordium tip cell (Drosophila) relationship: part_of FBbt:00007135 ! dorsal air sac primordium (Drosophila) [Term] id: FBbt:00007490 name: fan-shaped body layer 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third most ventral layer of the fan-shaped body." [FlyBase:FBrf0049409] synonym: "fan shaped body layer 3" EXACT [] is_a: FBbt:00040035 ! fan-shaped body layer (Drosophila) [Term] id: FBbt:00007491 name: fan-shaped body layer 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth most ventral (third most dorsal) layer of the fan-shaped body." [FlyBase:FBrf0049409] synonym: "fan shaped body layer 4" EXACT [] is_a: FBbt:00040035 ! fan-shaped body layer (Drosophila) [Term] id: FBbt:00007492 name: fan-shaped body layer 5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth most ventral (second most dorsal) layer of the fan-shaped body." [FlyBase:FBrf0049409] synonym: "fan shaped body layer 5" EXACT [] is_a: FBbt:00040035 ! fan-shaped body layer (Drosophila) [Term] id: FBbt:00007493 name: fan-shaped body layer 6 (Drosophila) namespace: fly_anatomy.ontology def: "Most dorsal layer of the fan-shaped body." [FlyBase:FBrf0049409] synonym: "fan shaped body layer 6" EXACT [] synonym: "superior arch" EXACT [FBC:BrainName] is_a: FBbt:00040035 ! fan-shaped body layer (Drosophila) [Term] id: FBbt:00007494 name: fan-shaped body segment pair W (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007601 def: "Most lateral segment pair of the fan-shaped body." [FlyBase:FBrf0049409] comment: Hanesch et al., (1989) define 8 segments (A-H), 4 per hemisphere, that correspond to the segment pairs (groups) defined by BrainName and used here. Segment group W corresponds to A and H in Hanesch's nomenclature. synonym: "fan shaped body segment pair W" EXACT [] synonym: "segment A of fan-shaped body" NARROW [FlyBase:FBrf0049409] synonym: "segment H of fan-shaped body" NARROW [FlyBase:FBrf0049409] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003679 ! fan-shaped body (Drosophila) [Term] id: FBbt:00007495 name: fan-shaped body segment pair X (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007600 def: "Second most lateral segment group of the fan-shaped body." [FlyBase:FBrf0049409] comment: Hanesch et al., (1989) define 8 segments (A-H), 4 per hemisphere, that correspond to the segment pairs (groups) defined by BrainName and used here. Segment group X corresponds to B and G in Hanesch's nomenclature. synonym: "fan shaped body segment pair X" EXACT [] synonym: "segment B of fan-shaped body" NARROW [FlyBase:FBrf0049409] synonym: "segment G of fan-shaped body" NARROW [FlyBase:FBrf0049409] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003679 ! fan-shaped body (Drosophila) [Term] id: FBbt:00007496 name: fan-shaped body segment pair Y (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007499 def: "Third segment pair of the fan-shaped body (counting from lateral to medial)." [FlyBase:FBrf0049409] comment: Hanesch et al., (1989) define 8 segments (A-H), 4 per hemisphere, that correspond to the segment pairs (groups) defined by BrainName and used here. Segment group Y corresponds to C and F in Hanesch's nomenclature. synonym: "fan shaped body segment pair Y" EXACT [] synonym: "segment C of fan-shaped body" NARROW [FlyBase:FBrf0049409] synonym: "segment F of fan-shaped body" NARROW [FlyBase:FBrf0049409] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003679 ! fan-shaped body (Drosophila) [Term] id: FBbt:00007497 name: fan-shaped body segment pair Z (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00007498 def: "Medial-most segment pair of the fan-shaped body." [FlyBase:FBrf0049409] comment: Hanesch et al., (1989) define 8 segments (A-H), 4 per hemisphere, that correspond to the pairs (groups) defined by BrainName and used here. Segment group Z corresponds to D and E in Hanesch's nomenclature. synonym: "fan shaped body segment pair Z" EXACT [] synonym: "segment D of fan-shaped body" NARROW [FlyBase:FBrf0049409] synonym: "segment E of fan-shaped body" NARROW [FlyBase:FBrf0049409] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003679 ! fan-shaped body (Drosophila) [Term] id: FBbt:00007500 name: abdominal dorsal multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Dorsally located PNS sensory neuron of larval abdominal segments A1-7 that has multiple dendrites." [FlyBase:FBrf0047289, FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002024 ! dorsal multidendritic neuron (Drosophila) is_a: FBbt:00002385 ! abdominal dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00007501 name: abdominal lateral multidendritic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Laterally located PNS sensory neuron of larval abdominal segments A1-7 that has multiple dendrites." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00002030 ! lateral multidendritic neuron (Drosophila) is_a: FBbt:00002385 ! abdominal dorsal/lateral multidendritic neuron (Drosophila) relationship: part_of FBbt:00007305 ! embryonic/larval lateral sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00007502 name: pb-fb tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract that connects an adjacent pair of protocerebral bridge glomeruli to either a single fan-shaped body segment or a pair of adjacent fan-shaped body segments." [FlyBase:FBrf0049409] is_a: UBERON:0001018 ! axon tract [Term] id: FBbt:00007503 name: pb-fb tract W (Drosophila) namespace: fly_anatomy.ontology def: "Tract that connects protocerebral bridge glomeruli 7 and 8 to the ipsilateral fan-shaped body segment W." [FlyBase:FBrf0049409] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) [Term] id: FBbt:00007504 name: pb-fb tract X (Drosophila) namespace: fly_anatomy.ontology def: "Tract that connects protocerebral bridge glomeruli 5 and 6 to ipsilateral segment groups X and Y." [FlyBase:FBrf0049409] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) [Term] id: FBbt:00007505 name: pb-fb tract Y (Drosophila) namespace: fly_anatomy.ontology def: "Tract that connects protocerebral bridge glomeruli 3 and 4 to both fan-shaped body segment group Z (ipsilateral and contralateral)." [FlyBase:FBrf0049409] is_a: FBbt:00007084 ! midline crossing tract (Drosophila) [Term] id: FBbt:00007506 name: pb-fb tract Z (Drosophila) namespace: fly_anatomy.ontology def: "Tract that connects protocerebral bridge glomeruli 1 and 2 to a pair of contralateral, adjacent fan-shaped body segments groups: X and Y." [FlyBase:FBrf0049409] is_a: FBbt:00007084 ! midline crossing tract (Drosophila) [Term] id: FBbt:00007507 name: ring neuron R (Drosophila) namespace: fly_anatomy.ontology def: "Ring neuron whose soma is located in a cluster in the cortex just dorso-lateral to the antennal lobes and ventro-lateral to the lateral accessory lobes (ventral bodies) and which, in addition to forming ring arborizations with bleb-type (Hanesch et al., 1989) presynaptic terminals (Young and Armstrong, 2010) in the ellipsoid body, has a very small, compact arborization of thin (Hanesch et al., 1989) postsynaptic (Young and Armstrong, 2010) fibers in the ipsilateral bulb (lateral triangle). The fibers of these neurons run through the RF-tract. Their soma are very small - similar in size to those of the Kenyon cells." [FlyBase:FBrf0049409, FlyBase:FBrf0111476, FlyBase:FBrf0210154] comment: Sites inferred to be presynaptic by localization of fluorescently tagged synaptobrevin and to be postsynaptic by localization of fluorescently tagged DSCAM (Young and Armstrong, 2010). synonym: "LTR-EB" EXACT [FlyBase:FBrf0210154] synonym: "R neuron" EXACT [FlyBase:FBrf0111476] is_a: FBbt:00003649 ! ring neuron (Drosophila) [Term] id: FBbt:00007508 name: RF tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract carrying the projections of the cell body fibers of ring neurons from their cell body cluster to the bulb (lateral triangle). This tract also carries the fibers of fan-shaped neurons that have their cell bodies in a cluster adjacent to those of the ring neurons." [FlyBase:FBrf0049409] synonym: "ring fan tract" EXACT [FlyBase:FBrf0049409] is_a: UBERON:0001018 ! axon tract [Term] id: FBbt:00007509 name: median fan-shaped neuron Fm1 (Drosophila) namespace: fly_anatomy.ontology def: "Median fan-shaped neuron Fm whose perikarya lie in a dorso-caudal cluster near to the mushroom body calyx and have a domain of spiny fibers in the dorso-lateral protocerebrum." [FlyBase:FBrf0049409] comment: Detail in Hanesch et al., 1989, is insufficient to formally record innervation patterns outside the central complex for this neuron. synonym: "Fm1 neuron" RELATED [FlyBase:FBrf0049409] is_a: FBbt:00003658 ! median fan-shaped neuron Fm (Drosophila) [Term] id: FBbt:00007510 name: median fan-shaped neuron Fm2 (Drosophila) namespace: fly_anatomy.ontology def: "Median fan-shaped neuron Fm whose perikarya lie close to those of the R neurons (FBbt:00007507) whose projections they fasciculate with in the RF tract. They have spiny arborizations in the ipsilateral lateral accessory lobe (ventral body)." [FlyBase:FBrf0049409] synonym: "Fm2 neuron" RELATED [FlyBase:FBrf0049409] is_a: FBbt:00003658 ! median fan-shaped neuron Fm (Drosophila) [Term] id: FBbt:00007511 name: median fan-shaped neuron Fm3 (Drosophila) namespace: fly_anatomy.ontology def: "Median fan-shaped neuron Fm whose perikarya lie in a dorso-caudal cluster near to the mushroom body calyx and have a domain of spiny fibers in the dorso-medial protocerebrum." [FlyBase:FBrf0049409] comment: Detail in Hanesch et al., 1989, is insufficient to formally record innervation patterns outside the central complex for this neuron. synonym: "Fm3 neuron" RELATED [FlyBase:FBrf0049409] is_a: FBbt:00003658 ! median fan-shaped neuron Fm (Drosophila) [Term] id: FBbt:00007512 name: embryonic/larval gut (Drosophila) namespace: fly_anatomy.ontology def: "Structure consisting of the embryonic/larval foregut, midgut and hindgut." [FBC:DOS] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of FBbt:00001842 ! embryonic/larval digestive system (Drosophila) relationship: part_of FBbt:00100323 ! embryonic/larval alimentary canal (Drosophila) [Term] id: FBbt:00007513 name: adult gut (Drosophila) namespace: fly_anatomy.ontology def: "Structure consisting of the adult foregut, midgut and hindgut." [FBC:DOS] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00100322 ! adult alimentary canal (Drosophila) relationship: part_of UBERON:0001555 ! digestive tract [Term] id: FBbt:00007514 name: small field neuron of the central complex (Drosophila) namespace: fly_anatomy.ontology def: "A small field neuron that innervates the central complex. The majority of small field neurons of the central complex are intrinsic to it, and they typically connect one central complex domain to another. Some also connect subdomains within a single central complex domain." [FlyBase:FBrf0049409] is_a: FBbt:00003633 ! small field neuron (Drosophila) [Term] id: FBbt:00007515 name: large field neuron of the central complex (Drosophila) namespace: fly_anatomy.ontology def: "Large field neuron that innervates the central complex. Typically these neurons innervate a single neuropil domain with the central complex, arborizing in either the entire domain or some entire subdomain, as well as innervating additional regions external to the central complex." [FlyBase:FBrf0049409] is_a: FBbt:00003648 ! large field neuron (Drosophila) [Term] id: FBbt:00007516 name: vertical system neuron (Drosophila) namespace: fly_anatomy.ontology def: "Giant neuron of the lobula plate with a dendritic arbor that extends along the dorsal-ventral axis of the lobula plate." [FlyBase:FBrf0155898] comment: Disambiguation - Not to be confused with the vertical fiber system neurons of the central complex (FBbt:00003634). synonym: "VS" RELATED [FlyBrain_NDB:10041] synonym: "VS neuron" EXACT [FlyBase:FBrf0155898] xref: FlyBrain_NDB:10041 is_a: FBbt:00003906 ! lobula plate giant neuron (Drosophila) [Term] id: FBbt:00007517 name: vertical system neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "The outermost vertical system neuron. This neuron has a main dendritic shaft that produces one or a few dorsally projecting branches before sweeping ventrally. As the main shaft extends ventrally, it continues to produce smaller branches that combine to form a narrow band covering the most lateral part of the lobula plate. This cell is relatively flat but extends anteriorly in the dorsal aspect of its dendritic tree." [FlyBase:FBrf0155898] synonym: "VS1 neuron" EXACT [FlyBase:FBrf0155898] is_a: FBbt:00007516 ! vertical system neuron (Drosophila) [Term] id: FBbt:00007518 name: vertical system neuron 2 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical system neuron whose dendritic tree within the lobula plate partially overlaps with that of vertical system neuron 1 (VS1) but extends more medially. Its major dendritic shaft sweeps from dorsal to ventral. Its dendritic tree is less highly branched than that of VS1 and is very flattened in the anterior-posterior axis, with all of its dendritic structures among the posterior dendrites of the vertical system." [FlyBase:FBrf0155898] synonym: "VS2 neuron" EXACT [FlyBase:FBrf0155898] is_a: FBbt:00007516 ! vertical system neuron (Drosophila) [Term] id: FBbt:00007519 name: vertical system neuron 3 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical system neuron with both dorsally and ventrally sweeping major branches and whose dorsal dendritic tree extends anteriorly and posteriorly. Unlike ventral system neuron 2, its dorsal dendrites continue to slant laterally as they extend dorsally and have a major component that extends anteriorly." [FlyBase:FBrf0155898] synonym: "VS3 neuron" EXACT [FlyBase:FBrf0155898] is_a: FBbt:00007516 ! vertical system neuron (Drosophila) [Term] id: FBbt:00007520 name: vertical system neuron 4 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical system neuron with both dorsally and ventrally sweeping major branches and whose dorsal dendritic tree extends anteriorly and posteriorly. Unlike VS3, its dorsal dendrites curve so that they extend directly dorsally or even medially and have only a few simple anterior projections." [FlyBase:FBrf0155898] synonym: "VS4 neuron" EXACT [FlyBase:FBrf0155898] is_a: FBbt:00007516 ! vertical system neuron (Drosophila) [Term] id: FBbt:00007521 name: vertical system neuron 5 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical system neuron whose dendritic branching pattern is simple and predominantly limited to the dorsal lobula plate. This neuron projects at least two major dendritic branches dorsally, one from the initial dorsal extension, and one from a major branch that initially grows into the central lobula before contributing a dorsally extending branch. Its dendritic tree extends much more anteriorly than that of other ventral system neurons." [FlyBase:FBrf0155898] synonym: "VS5 neuron" EXACT [FlyBase:FBrf0155898] is_a: FBbt:00007516 ! vertical system neuron (Drosophila) [Term] id: FBbt:00007522 name: vertical system neuron 6 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical system neuron whose dendritic branching pattern is simple and predominantly limited to the dorsal lobula plate. This neuron has a single major dorsal branch that is an extension of the original dorsal arborization. Its dendritic tree extends anteriorly, but not as far as that of vertical system neuron 5." [FlyBase:FBrf0155898] synonym: "VS6 neuron" EXACT [FlyBase:FBrf0155898] is_a: FBbt:00007516 ! vertical system neuron (Drosophila) [Term] id: FBbt:00007523 name: pontine neuron P1 (Drosophila) namespace: fly_anatomy.ontology def: "Pontine neuron of the fan-shaped body that connects segments on either side of the midline." [FlyBase:FBrf0049409, FlyBase:FBrf0210154] is_a: FBbt:00003636 ! pontine neuron (Drosophila) relationship: part_of FBbt:00003679 ! fan-shaped body (Drosophila) [Term] id: FBbt:00007524 name: pontine neuron P2 (Drosophila) namespace: fly_anatomy.ontology def: "Pontine neuron of the fan-shaped body that connects adjacent segments within one layer." [FlyBase:FBrf0210154] is_a: FBbt:00003636 ! pontine neuron (Drosophila) [Term] id: FBbt:00007525 name: pontine neuron P3 (Drosophila) namespace: fly_anatomy.ontology def: "Pontine neuron of the fan-shaped body that connects adjacent layers within one segment." [FlyBase:FBrf0210154] is_a: FBbt:00003636 ! pontine neuron (Drosophila) [Term] id: FBbt:00007526 name: pontine neuron P4 (Drosophila) namespace: fly_anatomy.ontology def: "Pontine neuron of the fan-shaped body that arborizes in a single segment and connects dorsal and ventral layers." [FlyBase:FBrf0210154] is_a: FBbt:00003636 ! pontine neuron (Drosophila) [Term] id: FBbt:00007527 name: pontine neuron P1a (Drosophila) namespace: fly_anatomy.ontology def: "Pontine neuron P1 that arborizes in layer 3 of the fan-shaped body. On entering the fan-shaped body, its projection bifurcates, one branch running anteriorly through one segment and arborizing there with spines, the other running along the caudal surface across the midline and sending blebbed endings into a segment that is separated from the ipsilateral segment by half the width of the fan-shaped body." [FlyBase:FBrf0049409, FlyBase:FBrf0210154] comment: See Figure 8 of Hanesch et al., (1989). is_a: FBbt:00007523 ! pontine neuron P1 (Drosophila) [Term] id: FBbt:00007528 name: pontine neuron P1b (Drosophila) namespace: fly_anatomy.ontology def: "Pontine neuron P1 (i.e. one that links contralateral segments of the fan-shaped body) that arborizes in several layers of the dorsal fan-shaped body." [FlyBase:FBrf0210156] is_a: FBbt:00007523 ! pontine neuron P1 (Drosophila) [Term] id: FBbt:00007529 name: lateral fan-shaped neuron Fl1 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0210154] is_a: FBbt:00003659 ! lateral fan-shaped neuron Fl (Drosophila) [Term] id: FBbt:00007530 name: lateral fan-shaped neuron Fl2 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0210154] is_a: FBbt:00003659 ! lateral fan-shaped neuron Fl (Drosophila) [Term] id: FBbt:00007531 name: lateral fan-shaped neuron Fl3 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0210154] is_a: FBbt:00003659 ! lateral fan-shaped neuron Fl (Drosophila) [Term] id: FBbt:00007532 name: lateral fan-shaped neuron Fl4 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0210154] is_a: FBbt:00003659 ! lateral fan-shaped neuron Fl (Drosophila) [Term] id: FBbt:00007533 name: lateral fan-shaped neuron FE1 (Drosophila) namespace: fly_anatomy.ontology def: "Lateral fan-shaped neuron that connects the fan-shaped body and the ellipsoid body." [FlyBase:FBrf0210154] is_a: FBbt:00003659 ! lateral fan-shaped neuron Fl (Drosophila) [Term] id: FBbt:00007534 name: lateral fan-shaped neuron ExFl1 (Drosophila) namespace: fly_anatomy.ontology def: "Extrinsic lateral fan-shaped neuron that projects posteriorly, arborizing in the middle inferior medial protocerebrum and lateral accessory lobe (ventral body), before projecting across the midline to circle around the contralateral side of the ellipsoid body, and innervates the fan-shaped body. Innervation of the lateral accessory lobes is presynaptic, whilst that of the fan-shaped body is postsynaptic. The cell bodies of neurons in this class cluster in the cortex dorsal to the antennal lobes." [FlyBase:FBrf0210154] is_a: FBbt:00003659 ! lateral fan-shaped neuron Fl (Drosophila) [Term] id: FBbt:00007535 name: lateral fan-shaped neuron ExFl2 (Drosophila) namespace: fly_anatomy.ontology def: "Extrinsic lateral fan-shaped neuron that projects dorso-anteriorly to the posterior superior medial protocerebrum where it forms postsynaptic arborizations prior to forming presynaptic arborizations in the fan-shaped body. The cell bodies of these neurons lie in a cluster lateral to the mushroom body calyx. Arborization in the fan-shaped body spans a whole layer, but within that layer boundaries split the arborization into 16 segments." [FlyBase:FBrf0210154] is_a: FBbt:00003659 ! lateral fan-shaped neuron Fl (Drosophila) is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) [Term] id: FBbt:00007536 name: fan-shaped neuron F6 (Drosophila) namespace: fly_anatomy.ontology def: "Any fan-shaped neuron (FBbt:00003657) that has synaptic terminals in some fan-shaped body layer 6 (FBbt:00007493)." [FBC:auto_generated_definition, FlyBase:FBrf0207994] synonym: "fan shaped neuron F6" EXACT [] is_a: FBbt:00003657 ! fan-shaped neuron (Drosophila) [Term] id: FBbt:00007537 name: ring neuron R4m (Drosophila) namespace: fly_anatomy.ontology def: "A ring neuron R4 whose arborization in the ellipsoid body is largely restricted to the inner (medial) region of the ellipsoid body outer ring." [FlyBase:FBrf0111476, FlyBase:FBrf0210154] synonym: "R4m neuron" EXACT [FlyBase:FBrf0111476] is_a: FBbt:00003653 ! ring neuron R4 (Drosophila) [Term] id: FBbt:00007538 name: ring neuron R4d (Drosophila) namespace: fly_anatomy.ontology def: "A ring neuron R4 neuron with whose arborization in the ellipsoid body is largely restricted to the most outer (distal) ring of the ellipsoid body outer ring." [FlyBase:FBrf0111476, FlyBase:FBrf0210154] synonym: "R4d neuron" EXACT [FlyBase:FBrf0111476] is_a: FBbt:00003653 ! ring neuron R4 (Drosophila) [Term] id: FBbt:00007539 name: protocerebral bridge lateral neuron PBl (Drosophila) namespace: fly_anatomy.ontology def: "Large field neuron of the central complex that is intrinsic to the protocerebral bridge. Its fiber enters the protocerebral bridge laterally and arborizes in all 16 glomeruli. The soma of these neurons are located in the posterior cortex, medial and ventral to the Kenyon cell soma." [FlyBase:FBrf0049409, FlyBase:FBrf0210154] is_a: FBbt:00007515 ! large field neuron of the central complex (Drosophila) [Term] id: FBbt:00007540 name: fan-shaped neuron F1 (Drosophila) namespace: fly_anatomy.ontology def: "Any fan-shaped neuron (FBbt:00003657) that has synaptic terminals in some fan-shaped body layer 1 (FBbt:00007487)." [FBC:auto_generated_definition, FlyBase:FBrf0207994] synonym: "fan shaped neuron F1" EXACT [] is_a: FBbt:00003657 ! fan-shaped neuron (Drosophila) [Term] id: FBbt:00007541 name: fan-shaped neuron F2 (Drosophila) namespace: fly_anatomy.ontology def: "Any fan-shaped neuron (FBbt:00003657) that has synaptic terminals in some fan-shaped body layer 2 (FBbt:00007488)." [FBC:auto_generated_definition] synonym: "fan shaped neuron F2" EXACT [] is_a: FBbt:00003657 ! fan-shaped neuron (Drosophila) [Term] id: FBbt:00007542 name: fan-shaped neuron F3 (Drosophila) namespace: fly_anatomy.ontology def: "Any fan-shaped neuron (FBbt:00003657) that has synaptic terminals in some fan-shaped body layer 3 (FBbt:00007490)." [FBC:auto_generated_definition] synonym: "fan shaped neuron F3" EXACT [] is_a: FBbt:00003657 ! fan-shaped neuron (Drosophila) [Term] id: FBbt:00007543 name: fan-shaped neuron F4 (Drosophila) namespace: fly_anatomy.ontology def: "Any fan-shaped neuron (FBbt:00003657) that has synaptic terminals in some fan-shaped body layer 4 (FBbt:00007491)." [FBC:auto_generated_definition] synonym: "fan shaped neuron F4" EXACT [] is_a: FBbt:00003657 ! fan-shaped neuron (Drosophila) [Term] id: FBbt:00007544 name: fan-shaped neuron F5 (Drosophila) namespace: fly_anatomy.ontology def: "Any fan-shaped neuron (FBbt:00003657) that has synaptic terminals in some fan-shaped body layer 5 (FBbt:00007492)." [FBC:auto_generated_definition, FlyBase:FBrf0207994] synonym: "fan shaped neuron F5" EXACT [] is_a: FBbt:00003657 ! fan-shaped neuron (Drosophila) [Term] id: FBbt:00007545 name: ellipsoid body shell (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-posterior subdivision of the ellipsoid body." [FlyBase:FBrf0111476] synonym: "ellipsoid body principal disk" EXACT [FlyBase:FBrf0111476] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) [Term] id: FBbt:00007546 name: ellipsoid body segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second from top-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007547 name: ellipsoid body segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third from top-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007548 name: ellipsoid body segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth from top-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007549 name: ellipsoid body segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth from top-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007550 name: ellipsoid body segment 6 (Drosophila) namespace: fly_anatomy.ontology def: "Sixth from top-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007551 name: ellipsoid body segment 7 (Drosophila) namespace: fly_anatomy.ontology def: "Seventh from top-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007552 name: ellipsoid body segment 8 (Drosophila) namespace: fly_anatomy.ontology def: "Bottom-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007553 name: ellipsoid body anterior shell (Drosophila) namespace: fly_anatomy.ontology def: "Anteriorly located ellipsoid body shell." [FlyBase:FBrf0049409, FlyBase:FBrf0111476] synonym: "ellipsoid body anterior disk" EXACT [FlyBase:FBrf0111476] synonym: "ellipsoid body anterior ring" EXACT [FlyBase:FBrf0049409] is_a: FBbt:00007545 ! ellipsoid body shell (Drosophila) [Term] id: FBbt:00007554 name: ellipsoid body posterior shell (Drosophila) namespace: fly_anatomy.ontology def: "Posteriorly located ellipsoid body layer. It is the main site of arborization of the small-field elements of the ellipsoid body. These arborizations delimit the ellipsoid body segments." [FlyBase:FBrf0049409, FlyBase:FBrf0111476] synonym: "ellipsoid body posterior disk" EXACT [FlyBase:FBrf0111476] synonym: "ellipsoid body posterior ring" EXACT [FlyBase:FBrf0049409] is_a: FBbt:00007545 ! ellipsoid body shell (Drosophila) [Term] id: FBbt:00007555 name: ellipsoid body inner ring (Drosophila) namespace: fly_anatomy.ontology def: "Inner concentric subdivision of the ellipsoid body." [FlyBase:FBrf0049409] is_a: FBbt:00040034 ! ellipsoid body layer (Drosophila) [Term] id: FBbt:00007556 name: ellipsoid body outer ring (Drosophila) namespace: fly_anatomy.ontology def: "Outer concentric subdivision of the ellipsoid body." [FlyBase:FBrf0049409] is_a: FBbt:00040034 ! ellipsoid body layer (Drosophila) [Term] id: FBbt:00007557 name: larval protocerebral bridge (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil domain of the third instar larval brain that is the precursor of the adult protocerebral bridge. Unlike in the adult, this exists as a pair of separate domains that do not join across the midline. Each has an arched shape, and segmentation is only barely discernible." [FlyBase:FBrf0210156] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) [Term] id: FBbt:00007558 name: larval fan-shaped body (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) [Term] id: FBbt:00007559 name: vertical fiber system neuron pb8 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 8, the ipsilateral fan-shaped body segment W and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007560 name: vertical fiber system neuron pb7 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 7, the ipsilateral fan-shaped body segment W and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007561 name: vertical fiber system neuron pb6 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 6, the ipsilateral fan-shaped body segment X and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007562 name: vertical fiber system neuron pb5 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 5, the ipsilateral fan-shaped body segment X and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007563 name: vertical fiber system neuron pb4 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 4, the ipsilateral fan-shaped body segment X and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007564 name: vertical fiber system neuron pb3 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 3, the ipsilateral fan-shaped body segment X and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007565 name: vertical fiber system neuron pb2 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 2, the ipsilateral fan-shaped body segment X and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007566 name: vertical fiber system neuron pb1 (Drosophila) namespace: fly_anatomy.ontology def: "Vertical fiber system neuron that innervates protocerebral bridge glomerulus 1, the ipsilateral fan-shaped body segment X and the contralateral nodulus." [FlyBase:FBrf0049409] comment: See figure 5 of Hanesch et al., (1989). is_a: FBbt:00003634 ! vertical fiber system neuron (Drosophila) [Term] id: FBbt:00007567 name: horizontal fiber system neuron pb8 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates protocerebral bridge glomerulus 8, fasciculates with pb-fb tract W, innervates the ipsilateral fan-shaped body segment pair W and the ipsilateral lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007568 name: horizontal fiber system neuron pb7 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates protocerebral bridge glomerulus 7, fasciculates with pb-fb tract W, innervates the ipsilateral fan-shaped body segment pair W and the ipsilateral lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007569 name: horizontal fiber system neuron pb6 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates protocerebral bridge glomerulus 6 and fasciculates with pb-fb tract X. It also innervates the ipsilateral fan-shaped body segment pair X and the ipsilateral lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007570 name: horizontal fiber system neuron pb5 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates protocerebral bridge glomerulus 5, fasciculates with pb-fb tract X, innervates the ipsilateral fan-shaped body segment pair Y and the ipsilateral lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007571 name: horizontal fiber system neuron pb4 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates the protocerebral bridge glomerulus 4 and fasciculates with pb-fb tract Y. It also innervates the ipsilateral fan-shaped body segment pair Z and the contralateral lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007572 name: horizontal fiber system neuron pb3 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates protocerebral bridge glomerulus 3, fasciculates with pb-fb tract Y, innervates contralateral fan-shaped body segment pair Z and the contralateral lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007573 name: horizontal fiber system neuron pb2 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates the protocerebral bridge glomerulus 2, and fasciculates with pb-fb tract Z. Crossing contralaterally, it innervates both the fan-shaped body segment pair Y and the lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007574 name: horizontal fiber system neuron pb1 (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal fiber system neuron that innervates protocerebral bridge glomerulus 1, fasciculates with pb-fb tract Z, innervates the contralateral fan-shaped body segment pair X and the contralateral lateral accessory lobe." [FlyBase:FBrf0049409] comment: See figure 6 of Hanesch et al., (1989). is_a: FBbt:00003635 ! horizontal fiber system neuron (Drosophila) [Term] id: FBbt:00007575 name: aristal sensory neuron VP2 (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the aristal sensillum with a dendrite that innervates the ipsilateral antennal lobe glomerulus VP2." [FlyBase:FBrf0051437] synonym: "aristal neuron (VP3)" EXACT [FlyBrain_NDB:10369] xref: FlyBrain_NDB:10369 is_a: FBbt:00004186 ! neuron of aristal sensillum (Drosophila) [Term] id: FBbt:00007576 name: aristal sensory neuron VP3 (Drosophila) namespace: fly_anatomy.ontology def: "Sensory neuron of the aristal sensillum with a dendrite that innervates the ipsilateral antennal lobe glomerulus VP3." [FlyBase:FBrf0051437] synonym: "aristal neuron (VP3)" EXACT [FlyBrain_NDB:10368] xref: FlyBrain_NDB:10368 is_a: FBbt:00004186 ! neuron of aristal sensillum (Drosophila) [Term] id: FBbt:00007577 name: optic lobe intrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any intrinsic neuron (FBbt:00003664) that is part of some optic lobe (FBbt:00003701) and that has synaptic terminals in some optic lobe (FBbt:00003701)." [FBC:auto_generated_definition] is_a: FBbt:00003664 ! intrinsic neuron (Drosophila) is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00007578 name: intrinsic columnar neuron (Drosophila) namespace: fly_anatomy.ontology def: "A columnar neuron whose arborizations are restricted to the optic lobe." [FlyBase:FBrf0049410] is_a: FBbt:00005129 ! columnar neuron (Drosophila) is_a: FBbt:00007577 ! optic lobe intrinsic neuron (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00007579 name: tangential neuron (Drosophila) namespace: fly_anatomy.ontology def: "Interneuron that has a major projection along the plane of a layer of optic lobe neuropil and that connects that layer to some layer of the contralateral optic lobe or to the central brain." [FlyBase:FBrf0049410] is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) is_a: FBbt:00003702 ! optic lobe neuron (Drosophila) [Term] id: FBbt:00007580 name: Y neuron Y6 (Drosophila) namespace: fly_anatomy.ontology def: "Y neuron that arborizes relatively broadly in all lobula plate layers and with a mix of terminal morphologies. Its branch in the lobula has narrow and mainly bleb-type arborizations in layers 1-4. Its branch in the lamina has a broader, bushy, fine, terminal arborization domain in layers M8-9." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. synonym: "Y6" RELATED [FlyBrain_NDB:10182] xref: FlyBrain_NDB:10182 is_a: FBbt:00003911 ! Y neuron (Drosophila) [Term] id: FBbt:00007581 name: optic glomerulus of the PLP (Drosophila) namespace: fly_anatomy.ontology def: "Any optic glomerulus (FBbt:00003698) that is part of some posterior lateral protocerebrum (FBbt:00040044)." [FBC:auto_generated_definition] is_a: FBbt:00003698 ! optic glomerulus (Drosophila) relationship: part_of FBbt:00040044 ! posterior lateral protocerebrum (Drosophila) [Term] id: FBbt:00007582 name: optic glomerulus of the PVLP (Drosophila) namespace: fly_anatomy.ontology def: "Any optic glomerulus (FBbt:00003698) that is part of some posterior ventrolateral protocerebrum (FBbt:00040042)." [FBC:auto_generated_definition] is_a: FBbt:00003698 ! optic glomerulus (Drosophila) relationship: part_of FBbt:00040042 ! posterior ventrolateral protocerebrum (Drosophila) [Term] id: FBbt:00007583 name: lobula plate element lpi (Drosophila) namespace: fly_anatomy.ontology def: "A lobula plate amacrine neuron that has a wide, bushy arborization with both bleb-type and fine terminals in lobula plate layers 3 and 4." [FlyBase:FBrf0049410] comment: Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. synonym: "Lpi" RELATED [FlyBrain_NDB:10096] synonym: "lobular plate element" EXACT [] xref: FlyBrain_NDB:10096 is_a: CL:0000561 ! amacrine cell is_a: FBbt:00003910 ! lobula plate intrinsic neuron (Drosophila) [Term] id: FBbt:00007584 name: ellipsoid body segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Top-most ellipsoid body segment." [FBC:BrainName] is_a: FBbt:00040070 ! ellipsoid body segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00007585 name: abdominal apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Any apodeme (FBbt:00005091) that is part of some abdomen (FBbt:00000020)." [FBC:auto_generated_definition] is_a: FBbt:00005091 ! apodeme (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00007586 name: larval abdominal segment A1-7 (Drosophila) namespace: fly_anatomy.ontology def: "One of the first seven larval segments (counting from anterior to posterior). Larval segments 1-7 have almost identical musculature, gross tracheal morphology and sensory organ types and distribution." [FlyBase:FBrf0089570] is_a: FBbt:00001747 ! larval abdominal segment (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00007587 name: bridge cell (Drosophila) namespace: fly_anatomy.ontology def: "A mesodermal cell that is located in the posterior-lateral margin of a tracheal metamere from early in embryonic stage 12, adjacent to the just-forming dorsal trunk posterior branch (FBbt:00000223). During late stage 12 and stage 13, it forms a bridge between the dorsal trunk posterior branch (FBbt:00000223) of one tracheal metamere and the anterior branch (FBbt:00000213) of the adjacent (posterior) metamere. Following fusion during stage 14, this cell becomes displaced from the trachea." [FlyBase:FBrf0130172] synonym: "tracheal fusion bridge cell" EXACT [] is_a: FBbt:00007008 ! somatic precursor cell (Drosophila) relationship: develops_from FBbt:00000128 ! trunk mesoderm (Drosophila) [Term] id: FBbt:00007588 name: embryonic/larval A1-7 pleural external apodeme (Drosophila) namespace: fly_anatomy.ontology def: "Intrasegmental apodeme that is the attachment site of the lateral transverse muscles LT1-3 (also known as pleural external muscles)." [FlyBase:FBrf0058826] synonym: "petapo" EXACT [FlyBase:FBrf0058826] is_a: FBbt:00001006 ! embryonic/larval abdominal apodeme (Drosophila) is_a: FBbt:00001016 ! embryonic/larval intrasegmental apodeme (Drosophila) is_a: FBbt:00005089 ! muscle attachment site (Drosophila) relationship: part_of FBbt:00007586 ! larval abdominal segment A1-7 (Drosophila) [Term] id: FBbt:00007589 name: ventral intersegmental muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The dorsal-most ventral intersegmental muscle of the thorax. This muscle is slender compared to the other intersegmental muscles of the thorax. It is attached to the anterior apodeme of the prothoracic segment and the anterior apodeme of the mesothoracic segment." [FlyBase:FBrf0089570] synonym: "VIS1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] is_a: FBbt:00000515 ! prothoracic ventral intersegmental muscle (Drosophila) [Term] id: FBbt:00007590 name: abdominal 8 ventral acute muscle 1 (Drosophila) namespace: fly_anatomy.ontology def: "The only ventral acute muscle of abdominal segment 8. Is ventral/anterior end is inserted into the A7/8 intersegmental apodeme. Its posterior/dorsal end is inserted near the base of the posterior spiracle." [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "A8 VA1" EXACT [FlyBase:FBrf0064793, FlyBase:FBrf0089570] synonym: "spiracle retractor muscle a" EXACT [FlyBase:FBrf0041814] synonym: "srma" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00000474 ! acute muscle (Drosophila) is_a: FBbt:00000952 ! hypodermal muscle of abdominal 8 (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00007591 name: embryonic/larval abdominal 8 intersegmental apodeme (Drosophila) namespace: fly_anatomy.ontology def: "An embryonic/larval apodeme at the boundary of abdominal segments A8 and A9. It is the insertion site for the terminal oblique muscles 1 and 2." [FlyBase:FBrf0089570] is_a: FBbt:00001008 ! embryonic/larval abdominal intersegmental apodeme (Drosophila) is_a: FBbt:00005089 ! muscle attachment site (Drosophila) relationship: part_of FBbt:00001755 ! larval abdominal segment 8 (Drosophila) [Term] id: FBbt:00007592 name: femoral chordotonal organ (Drosophila) namespace: fly_anatomy.ontology def: "Any chordotonal organ (FBbt:00005215) that is part of some femur (FBbt:00004644)." [FBC:auto_generated_definition] is_a: FBbt:00100292 ! chordotonal organ of leg (Drosophila) relationship: part_of FBbt:00004644 ! femur (Drosophila) [Term] id: FBbt:00007593 name: fused midgut primordium (Drosophila) namespace: fly_anatomy.ontology def: "The developing larval midgut from the beginning of fusion of the anterior and posterior midgut primordia during stage 12 through the completion of fusion at the dorsal and ventral midlines during stage 15 to the completion of gastric caecum development during stage 16." [FlyBase:FBrf0089570] is_a: FBbt:00005624 ! embryonic/larval midgut primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005334 ! stage 16 embryo (Drosophila) [Term] id: FBbt:00007594 name: embryonic/larval salivary gland body (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00100317 ! gland (Drosophila) relationship: develops_from FBbt:00005512 ! salivary gland body primordium (Drosophila) relationship: part_of FBbt:00001878 ! embryonic/larval salivary gland (Drosophila) [Term] id: FBbt:00007595 name: tarsal segment 5 (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004652 def: "Fifth, and most distal, segment of the tarsus." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "fifth segment of the tarsus" EXACT [] synonym: "fifth tarsal segment" EXACT [] synonym: "tarsal segment 5" EXACT [] is_a: FBbt:00004646 ! tarsal segment (Drosophila) [Term] id: FBbt:00007596 name: integumentary process (Drosophila) namespace: fly_anatomy.ontology def: "A region of integument that protrudes from the body or from an appendage, but that is not articulated at its base and does not contain muscle attachment sites." [FBC:DOS, ISBN:978-0-8014-8125-3] is_a: FBbt:00007284 ! region of integument (Drosophila) [Term] id: FBbt:00007597 name: CNS perineurial sheath glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Any glial cell (FBbt:00005144) that is part of some central nervous system (FBbt:00005094) and that is part of some perineurial sheath (FBbt:00007089)." [FBC:auto_generated_definition] synonym: "CNS perineurial sheath cell" EXACT [] synonym: "perineurial surface associated glial cell" EXACT [] is_a: FBbt:00001252 ! surface associated glial cell (Drosophila) is_a: FBbt:00005153 ! perineurial sheath glial cell (Drosophila) relationship: part_of FBbt:00007089 ! perineurial sheath (Drosophila) relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00007598 name: embryonic/larval CNS subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the embryonic/larval CNS subperineurial glial sheath. These cells are rich in septate junctions and are a principal component of the larval blood-brain-barrier (Edwards and Meinertzhagen, 2010). They derive from the mesoderm (Edwards et al., 1993). In the larval abdomen there are typically 8 (but sometimes 9) subperineural glial cells per abdominal hemineuromere (Ito et al., 1995)." [FlyBase:FBrf0057603, FlyBase:FBrf0082171, ISBN:978-0-7204-7136-6] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00007605 ! CNS subperineurial glial cell (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier [Term] id: FBbt:00007599 name: segmental nerve root (Drosophila) namespace: fly_anatomy.ontology def: "The continuation of the neurite bundle and associated glia of the segmental nerve, inside the ventral nerve cord." [FBC:DOS] is_a: FBbt:00007602 ! nerve root (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00007602 name: nerve root (Drosophila) namespace: fly_anatomy.ontology def: "The continuation of the neurite bundle and associated glia of a nerve, inside the central nervous system." [FBC:DOS] is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00007603 name: left pb-fb tract W (Drosophila) namespace: fly_anatomy.ontology def: "Tract that connects the left protocerebral bridge glomeruli 7 and 8 to segment H of the fan-shaped body." [FlyBase:FBrf0049409] is_a: FBbt:00007503 ! pb-fb tract W (Drosophila) [Term] id: FBbt:00007604 name: intersegmental nerve root (Drosophila) namespace: fly_anatomy.ontology def: "The continuation of the neurite bundle and associated glia of the intersegmental nerve, inside the ventral nerve cord." [FBC:DOS] is_a: FBbt:00007602 ! nerve root (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00007605 name: CNS subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Any glial cell (FBbt:00005144) that is part of some central nervous system (FBbt:00005094) and that is part of some subperineurial glial sheath (FBbt:00007091)." [FBC:auto_generated_definition] is_a: FBbt:00001252 ! surface associated glial cell (Drosophila) is_a: FBbt:00001258 ! subperineurial glial cell (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier relationship: part_of UBERON:0001017 ! central nervous system [Term] id: FBbt:00011929 name: larval mushroom body (Drosophila) namespace: fly_anatomy.ontology def: "Mushroom body neuroblasts continue to supply increasing numbers of Kenyon cells through the larval stages. The axons of these neurons follow the tracts laid down during embryonic development. Which tracts they contribute to varies depending on the stage of development: from first instar to third instar stage 1, they contribute to the gamma lobe; during third instar stage 2 and puparium formation each axon bifurcates and contributes to the alpha' and beta' lobes (during the pupal stage they contribute to the alpha and beta lobes)." [FlyBase:FBrf0111409, FlyBase:FBrf0144836] subset: cur ! cur subset: larval_OF ! larval olfactory system is_a: UBERON:0001058 ! mushroom body relationship: develops_from FBbt:00005508 ! mushroom body primordium (Drosophila) relationship: part_of FBbt:00001925 ! embryonic/larval protocerebrum (Drosophila) [Term] id: FBbt:00012116 name: mesothoracic dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00002115 ! mesothoracic dorsal/lateral multidendritic neuron (Drosophila) is_a: FBbt:00006024 ! dorsal multidendritic neuron ddaF (Drosophila) [Term] id: FBbt:00012388 name: abdominal 2 dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaF (FBbt:00006025) that is part of some larval abdominal segment 2 (FBbt:00001749)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00006025 ! abdominal dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00012389 name: abdominal 3 dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaF (FBbt:00006025) that is part of some larval abdominal segment 3 (FBbt:00001750)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00006025 ! abdominal dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00012390 name: abdominal 4 dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaF (FBbt:00006025) that is part of some larval abdominal segment 4 (FBbt:00001751)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00006025 ! abdominal dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00012391 name: abdominal 5 dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaF (FBbt:00006025) that is part of some larval abdominal segment 5 (FBbt:00001752)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00006025 ! abdominal dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00012392 name: abdominal 6 dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaF (FBbt:00006025) that is part of some larval abdominal segment 6 (FBbt:00001753)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00006025 ! abdominal dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00012393 name: abdominal 7 dorsal multidendritic neuron ddaF (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal dorsal multidendritic neuron ddaF (FBbt:00006025) that is part of some larval abdominal segment 7 (FBbt:00001754)." [FBC:auto_generated_definition, FlyBase:FBrf0148966] subset: cur ! cur is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00006025 ! abdominal dorsal multidendritic neuron ddaF (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00013561 name: thoracic neuroblast t (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast that is located in one of a bilateral pair of clusters of 3 neuroblasts at the dorsal margin of the cortex of each larval thoracic neuromere, just posterior to the al neuroblast." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00013567 name: thoracic neuroblast l (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast that is located in one of a bilateral pair of clusters of 6 neuroblasts at the lateral margin of each larval thoracic neuromere, just posterior to the al neuroblast." [FlyBase:FBrf0047185] subset: cur ! cur is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00013572 name: thoracic neuroblast s (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast that is one of two rows of neuroblasts per hemi-neuromere of the larval thorax, 2 on either side of the midline per row." [FlyBase:FBrf0047185] is_a: FBbt:00003561 ! thoracic neuroblast (Drosophila) is_a: FBbt:00007115 ! embryonic/larval neuroblast (Drosophila) relationship: part_of FBbt:00001742 ! larval thoracic segment (Drosophila) [Term] id: FBbt:00014013 name: adult subesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain beneath the esophagus, consisting of the fused ganglia of the three gnathal segments." [http://flybrain.neurobio.arizona.edu/Flybrain/html/atlas/schematic/frontschem3.html, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: BrainName ! BrainName project terms subset: cur ! cur synonym: "SOG" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "suboesophageal ganglion" EXACT [FlyBase:FBrf0080339] is_a: FBbt:00004013 ! subesophageal ganglion (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00014201 name: early extended germ band embryo (Drosophila) namespace: fly_anatomy.ontology def: "A collective term for stages 9 and 10." [FBC:DOS] subset: cur ! cur is_a: FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: develops_from FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00014203 name: lateral head epidermis primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 HeadEpL" NARROW [FBC:ds555] synonym: "P2 HeadEpL" NARROW [FBC:ds555] is_a: FBbt:00005547 ! head epidermis primordium (Drosophila) is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) relationship: develops_from FBbt:00015256 ! central brain anlage (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00014874 name: presumptive oocyte (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00004877 ! cystocyte (Drosophila) relationship: part_of FBbt:00004866 ! germarium (Drosophila) [Term] id: FBbt:00015246 name: dorsal head epidermis (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A HeadEpiD" RELATED [FBC:ds555] is_a: UBERON:0007376 ! outer epithelial layer relationship: develops_from FBbt:00015247 ! dorsal head epidermis primordium (Drosophila) relationship: part_of FBbt:00005743 ! embryonic dorsal pouch (Drosophila) [Term] id: FBbt:00015247 name: dorsal head epidermis primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 HeadEpiD" RELATED [FBC:ds555] synonym: "P3 HeadEpiD" NARROW [FBC:ds555] is_a: FBbt:00005547 ! head epidermis primordium (Drosophila) is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) relationship: develops_from FBbt:00015248 ! dorsal head epidermis anlage (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00015248 name: dorsal head epidermis anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A HeadEpiD" RELATED [FBC:ds555] is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00015249 ! dorsal head epidermis anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00000119 ! anterior ectoderm (Drosophila) [Term] id: FBbt:00015249 name: dorsal head epidermis anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn HeadEpiD" RELATED [FBC:ds555] is_a: FBbt:00005413 ! anlage in statu nascendi (Drosophila) relationship: part_of FBbt:01000119 ! anterior ectoderm anlage (Drosophila) [Term] id: FBbt:00015252 name: antennal anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn AntP" RELATED [FBC:ds555] is_a: FBbt:00005413 ! anlage in statu nascendi (Drosophila) relationship: part_of FBbt:01000119 ! anterior ectoderm anlage (Drosophila) [Term] id: FBbt:00015253 name: antennal anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A AntP" RELATED [FBC:ds555] is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00015252 ! antennal anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00000119 ! anterior ectoderm (Drosophila) [Term] id: FBbt:00015254 name: ventral head epidermis (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00015255 ! ventral head epidermis primordium (Drosophila) relationship: part_of FBbt:00005741 ! embryonic head epidermis (Drosophila) [Term] id: FBbt:00015255 name: ventral head epidermis primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 HeadEpiV" NARROW [FBC:ds555] synonym: "P2 HeadEpiV" NARROW [FBC:ds555] is_a: FBbt:00005547 ! head epidermis primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00015253 ! antennal anlage (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00015256 name: central brain anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A CenBr" RELATED [FBC:ds555] synonym: "AProcEC" RELATED [] synonym: "procephalic ectoderm anlage" RELATED [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005415 ! central brain anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00001058 ! procephalic neurogenic region (Drosophila) [Term] id: FBbt:00015288 name: unfertilized egg (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: CL:0000025 ! egg [Term] id: FBbt:00015899 name: lateral longitudinal fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Lateral-most of the Fas2-immunopositive (FBgn0000635) fascicles of the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "third Fas2 fascicle" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00001103 ! longitudinal connective (Drosophila) [Term] id: FBbt:00015900 name: DL fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most Fas2-immunopositive (FBgn0000635) fascicle of the lateral fascicles in the embryonic/larval VNC, when seen in transverse section." [FlyBase:FBrf0076999, FlyBase:FBrf0105910, FlyBase:FBrf0156020, FlyBase:FBrf0160715] subset: cur ! cur synonym: "D2 fascicle" EXACT [] synonym: "DL tract" EXACT [] synonym: "DLT" RELATED [] synonym: "dorsolateral fascicle" EXACT [FlyBase:FBrf0160715] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) is_a: UBERON:0001019 ! fascicle relationship: part_of FBbt:00015899 ! lateral longitudinal fascicle (Drosophila) [Term] id: FBbt:00015911 name: frontal sac (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00000090 ! dorsal ridge (Drosophila) relationship: develops_from FBbt:00000158 ! embryonic procephalic segment (Drosophila) relationship: part_of FBbt:00005332 ! stage 15 embryo (Drosophila) relationship: part_of FBbt:00005333 ! late embryo (Drosophila) [Term] id: FBbt:00016000 name: hypopharynx anlage in statu nascendi (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Asn HyPh" RELATED [FBC:ds555] is_a: FBbt:00005413 ! anlage in statu nascendi (Drosophila) relationship: part_of FBbt:01000119 ! anterior ectoderm anlage (Drosophila) [Term] id: FBbt:00016001 name: hypopharyngeal sense organ primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P3 HySens" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005503 ! hypopharynx inclusive primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016002 name: hypopharynx proper primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 HyPh" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005503 ! hypopharynx inclusive primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016004 name: salivary gland common duct anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00017018 ! salivary gland duct inclusive primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016005 name: salivary gland common duct primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005623 def: "." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "embryonic salivary gland common duct" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00016004 ! salivary gland common duct anlage (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005620 ! presumptive embryonic salivary gland (Drosophila) [Term] id: FBbt:00016006 name: adult salivary gland anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur synonym: "adult salivary gland specific anlage" RELATED [FBC:DOS] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00017018 ! salivary gland duct inclusive primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00016007 name: ventral trunk epidermis primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 VenEp" RELATED [FBC:ds555] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016008 name: anal pad primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A/P1 AnPd" RELATED [FBC:ds555] synonym: "anal pad specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016009 name: ventral apodeme anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A venApo" RELATED [FBC:ds555] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00016010 name: ventral apodeme primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 venApo" RELATED [FBC:ds555] synonym: "ventral apodeme specific primordium" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00016009 ! ventral apodeme anlage (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016011 name: denticle field primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P DenBl" RELATED [FBC:ds555] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:10005326 ! denticle field anlage (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016012 name: denticle field (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: develops_from FBbt:00016011 ! denticle field primordium (Drosophila) relationship: part_of FBbt:00004983 ! embryonic/larval cuticle (Drosophila) [Term] id: FBbt:00016014 name: ventral midline glia primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: FBbt:00025997 ! mesectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005528 ! midline primordium (Drosophila) [Term] id: FBbt:00016015 name: midline neuronal primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: FBbt:00025997 ! mesectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005528 ! midline primordium (Drosophila) [Term] id: FBbt:00016016 name: midline neuron (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: CL:0000540 ! neuron [Term] id: FBbt:00016018 name: dorsal ridge primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: FBbt:00007046 ! dorsal ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00000112 ! dorsal ectoderm (Drosophila) relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016019 name: dorsal trunk epidermis primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005526 ! dorsal epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016020 name: dorsal apodeme anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005526 ! dorsal epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00016021 name: dorsal apodeme primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur synonym: "dorsal apodeme specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00016020 ! dorsal apodeme anlage (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016022 name: abdominal histoblast primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur synonym: "abdominal histoblast specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00017021 ! abdominal histoblast anlage (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016023 name: dorsal sensory complex proper primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: FBbt:00005551 ! sensory nervous system primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005553 ! dorsal sensory complex primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00016024 name: posterior spiracle proper primordium namespace: fly_anatomy.ontology def: "." [FBC:VH] is_obsolete: true replaced_by: FBbt:00000197 ! posterior spiracle primordium (Drosophila) subset: cur ! cur [Term] id: FBbt:00017000 name: amnioserosa primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00017017 ! amnioserosa anlage (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00017001 name: anterior spiracle primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005601 def: "Primordium of the anterior spiracle of the larva. Originates in the posterior third of the lateral ectoderm of the prothoracic segment during stage 14 as a group of cells that are more basophilic than those surrounding them. It fuses with the tracheal primordium of the mesothoracic segment (tracheal metamere 1)." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 AntSpi" RELATED [FBC:ds555] synonym: "anterior spiracle specific anlage" RELATED [] synonym: "embryonic anterior spiracle" EXACT [] is_a: FBbt:00005599 ! primordium of embryonic/larval spiracle (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017003 name: visceral branch primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005587 def: "Tracheal primordium that develops into the embryonic/larval the embryonic/larval visceral branch. It branches anteriorly from the dorsal portion of the transverse connective primordium during stage 12, coursing anteriorly and inwardly towards the gut." [FlyBase:FBrf0064787] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 VisTra" RELATED [FBC:ds555] synonym: "embryonic visceral branch" EXACT [] synonym: "intestinal branch" RELATED [] synonym: "k branch" RELATED [] synonym: "visceral branch specific anlage" EXACT [] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of FBbt:00005036 ! tracheal pit (Drosophila) [Term] id: FBbt:00017004 name: ventral longitudinal trunk primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] comment: Candidate for obsoletion as not clear what this might refer to. One possibility is that it corresponds to the ventral region of invaginated tracheal pit. Or it may correspond to the primordium of the lateral trunk (FBbt:00005578). subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 VenTra" RELATED [FBC:ds555] is_a: UBERON:0001048 ! primordium [Term] id: FBbt:00017006 name: plasmatocyte primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 Plasma" RELATED [FBC:ds555] synonym: "lamellocyte specific anlage" NARROW [] is_a: FBbt:00025999 ! head mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005247 ! embryonic hemocyte primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017007 name: crystal cell primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 Crys" RELATED [FBC:ds555] synonym: "crystal cell specific anlage" RELATED [] is_a: FBbt:00025999 ! head mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005247 ! embryonic hemocyte primordium (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017008 name: longitudinal visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000108 def: "This primordium first becomes distinct at around stage 11 as a group of cells at the posterior tip of the visceral mesoderm (the tail end of the germ-band). During germ-band retraction these cells migrate anteriorly and split into two clusters - one on either side of the posterior midgut primordium. When these cell reach the anterior tip of the posterior midgut primordium they disperse anteriorly as two rows along the germband. Finally, during midgut closure these cells spread regularly over the underlying circular visceral muscle primordium." [FlyBase:FBrf0089570, FlyBase:FBrf0111405] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "CVM" RELATED [] synonym: "P1 LoViMus" RELATED [FBC:ds555] synonym: "caudal visceral mesoderm" RELATED [] synonym: "longitudinal visceral mesoderm primordium" RELATED [] synonym: "longitudinal visceral muscle precursor" RELATED [] is_a: FBbt:00005519 ! visceral muscle primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017009 name: ring gland primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00005321 ! extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017010 name: dorsal trunk primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005576 def: "Region of the tracheal primordium that gives rise to the embryonic/larval dorsal trunk." [FBC:DOS] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "DT" RELATED [] synonym: "P1 dorTra" EXACT [FBC:ds555] synonym: "dorsal longitudinal trunk primordium" EXACT [] synonym: "dorsal trunk specific anlage" EXACT [] synonym: "embryonic dorsal trunk" EXACT [] synonym: "great lateral trunk" RELATED [] is_a: FBbt:00005574 ! tracheal branch primordium (Drosophila) is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005036 ! tracheal pit (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017011 name: primary segmental branch primordium (Drosophila) namespace: fly_anatomy.ontology def: "Primordium that develops into a primary trachea." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 SegTra" RELATED [FBC:ds555] synonym: "primary segmental branch specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017012 name: proventriculus outer layer primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 antEndoA" NARROW [FBC:ds555] synonym: "P3 antEndoA" NARROW [FBC:ds555] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00000445 ! proventriculus outer layer anlage (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) relationship: part_of FBbt:00005550 ! proventriculus primordium (Drosophila) [Term] id: FBbt:00017014 name: adult posterior midgut primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005453 def: "A primordium that consists of the progenitors of the adult posterior midgut from the time of their segregation from the anterior midgut inclusive primordium during late stage 11 and early stage 12 until they intercalate into the posterior midgut epithelium during stage 15." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "Pa AdMiPos" EXACT [] synonym: "adult midgut precursor specific anlage" RELATED [] is_a: FBbt:00005246 ! midgut primordium (Drosophila) is_a: FBbt:00025995 ! posterior endoderm derivative (Drosophila) relationship: develops_from FBbt:10005329 ! posterior midgut primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00017015 name: circular visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000107 def: "Primordium of the circular visceral muscle of the trunk. Becomes distinct from the rest of the trunk mesoderm by stage 11 when two distinct layers of trunk mesoderm are apparent, the inner of which is the circular visceral muscle primordium. By stage 12, these cells form a palisade consisting of a dorsal row an a ventral row of tightly packed cells. These cells adhere to the anterior and posterior midgut rudiments as they extend. During dorsal closure they spread out to encircle the midgut." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 ViMus" RELATED [FBC:ds555] synonym: "circular visceral mesoderm primordium" RELATED [] synonym: "circular visceral muscle precursor" RELATED [] synonym: "splanchopleura" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00005519 ! visceral muscle primordium (Drosophila) is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000130 ! visceral mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017016 name: excretory star cell primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 StaCe" RELATED [FBC:ds555] is_a: FBbt:00026002 ! visceral mesoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00000130 ! visceral mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017017 name: amnioserosa anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005422 ! amnioserosa anlage in statu nascendi (Drosophila) relationship: part_of FBbt:00005317 ! gastrula embryo (Drosophila) [Term] id: FBbt:00017018 name: salivary gland duct inclusive primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 iSalD" RELATED [FBC:ds555] synonym: "salivary gland duct specific anlage" BROAD [] is_a: FBbt:00025993 ! ventral ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005558 ! ventral ectoderm (Drosophila) relationship: part_of FBbt:00014201 ! early extended germ band embryo (Drosophila) [Term] id: FBbt:00017019 name: cibarium primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur synonym: "atrium primordium" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005534 ! gnathal primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017020 name: oenocyte primordium (Drosophila) namespace: fly_anatomy.ontology def: "A 'whorl' of larval oenocyte precursors which forms transiently around each 'chordotonal precursor cell C1' during stage 11. It ceases to exist when these cells delaminate during stages 11 and 12." [FlyBase:FBrf0180129] subset: cur ! cur synonym: "oenocyte specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: develops_from FBbt:00005526 ! dorsal epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017021 name: abdominal histoblast anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: cur ! cur is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005526 ! dorsal epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00017025 name: secondary branch/tracheole primordium (Drosophila) namespace: fly_anatomy.ontology def: "Precursor tissue of secondary trachea and tracheoles." [FBC:DOS] comment: There is a good case for merging this with 'terminal tracheal cell' as secondary branches / tracheoles typically (always?) develop from a single cell. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 Tracheo" RELATED [FBC:ds555] synonym: "secondary branch specific anlage" NARROW [] synonym: "tracheole specific anlage" NARROW [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00017027 name: gastric caecum primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005629 def: "Primordium of the gastric caecum of the larva. There are four of these per midgut. They first become apparent as evaginations at the anterior end of the fused midgut primordium during stage 16." [FlyBase:FBrf0064792] subset: cur ! cur synonym: "embryonic gastric caecum" EXACT [] is_a: FBbt:00005624 ! embryonic/larval midgut primordium (Drosophila) is_a: FBbt:00025996 ! anterior endoderm derivative (Drosophila) relationship: develops_from FBbt:00000444 ! anterior midgut primordium (Drosophila) relationship: part_of FBbt:00007593 ! fused midgut primordium (Drosophila) [Term] id: FBbt:00017028 name: adult anterior midgut primordium (Drosophila) namespace: fly_anatomy.ontology def: "A primordium that consists of the progenitors of the adult anterior midgut from the time of their segregation from the anterior midgut inclusive primordium during late stage 11 and early stage 12 until they intercalate into the anterior midgut epithelium during stage 15." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 AdMiAnt" RELATED [FBC:ds555] synonym: "adult midgut precursor specific anlage" RELATED [] is_a: FBbt:00005246 ! midgut primordium (Drosophila) is_a: FBbt:00025996 ! anterior endoderm derivative (Drosophila) relationship: develops_from FBbt:00000444 ! anterior midgut primordium (Drosophila) [Term] id: FBbt:00017426 name: SNb (Drosophila) namespace: fly_anatomy.ontology def: "A branch of segmental nerve of larval A1-7." [FlyBase:FBrf0089570] is_a: FBbt:00002179 ! abdominal nerve (Drosophila) relationship: part_of FBbt:00007315 ! segmental nerve of A1-7 (Drosophila) [Term] id: FBbt:00018001 name: esophagus anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A Eso" RELATED [FBC:ds555] synonym: "oesophagus anlage" EXACT [] is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005431 ! foregut anlage (Drosophila) [Term] id: FBbt:00018002 name: stomatogastric nervous system anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A SNS" RELATED [FBC:ds555] is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005431 ! foregut anlage (Drosophila) [Term] id: FBbt:00018003 name: frontal ganglion primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 FrGgl" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005536 ! stomatogastric nervous system primordium (Drosophila) relationship: part_of FBbt:00005252 ! stomodeal invagination late (Drosophila) relationship: part_of UBERON:0000930 ! stomodeum [Term] id: FBbt:00018004 name: hypocerebral/esophageal ganglion primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 HyEsGgl" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005536 ! stomatogastric nervous system primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of UBERON:0000930 ! stomodeum [Term] id: FBbt:00018005 name: proventricular ganglion primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 ProvGgl" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005536 ! stomatogastric nervous system primordium (Drosophila) relationship: part_of FBbt:00005252 ! stomodeal invagination late (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:00018006 name: proventriculus anlage (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A Prov" RELATED [FBC:ds555] is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005431 ! foregut anlage (Drosophila) [Term] id: FBbt:00018007 name: proventriculus inclusive primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P2 Prov" RELATED [FBC:ds555] is_a: FBbt:00005535 ! foregut primordium (Drosophila) is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) relationship: develops_from FBbt:00018006 ! proventriculus anlage (Drosophila) relationship: part_of FBbt:00000120 ! early stomodeal invagination (Drosophila) [Term] id: FBbt:00018008 name: proventriculus inner layer primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A ProvI" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00018007 ! proventriculus inclusive primordium (Drosophila) relationship: part_of FBbt:00005252 ! stomodeal invagination late (Drosophila) relationship: part_of FBbt:00005550 ! proventriculus primordium (Drosophila) relationship: part_of UBERON:0000930 ! stomodeum [Term] id: FBbt:00018009 name: proventriculus intermediate layer primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "AProvR" RELATED [] synonym: "proventriculus reccurrent layer primordium" RELATED [] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00018007 ! proventriculus inclusive primordium (Drosophila) relationship: part_of FBbt:00005252 ! stomodeal invagination late (Drosophila) relationship: part_of FBbt:00005550 ! proventriculus primordium (Drosophila) relationship: part_of UBERON:0000930 ! stomodeum [Term] id: FBbt:00018010 name: adult foregut precursor primordium (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A AdFoG" RELATED [FBC:ds555] is_a: FBbt:00025991 ! anterior ectoderm derivative (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00018007 ! proventriculus inclusive primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of UBERON:0000930 ! stomodeum [Term] id: FBbt:00025990 name: ectoderm derivative (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00005253 def: "." [FBC:DOS] subset: cur ! cur synonym: "ectodermal derivative" EXACT [] is_a: FBbt:00000000 ! germ layer derivative (Drosophila) relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: FBbt:00025991 name: anterior ectoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00025990 ! ectoderm derivative (Drosophila) relationship: develops_from FBbt:00000119 ! anterior ectoderm (Drosophila) [Term] id: FBbt:00025992 name: posterior ectoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00025990 ! ectoderm derivative (Drosophila) relationship: develops_from FBbt:00000122 ! posterior ectoderm (Drosophila) [Term] id: FBbt:00025993 name: ventral ectoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00025990 ! ectoderm derivative (Drosophila) relationship: develops_from FBbt:00005558 ! ventral ectoderm (Drosophila) [Term] id: FBbt:00025994 name: endoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00000000 ! germ layer derivative (Drosophila) relationship: develops_from UBERON:0000925 ! endoderm [Term] id: FBbt:00025995 name: posterior endoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00025994 ! endoderm derivative (Drosophila) relationship: develops_from FBbt:00005560 ! posterior endoderm (Drosophila) [Term] id: FBbt:00025996 name: anterior endoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00025994 ! endoderm derivative (Drosophila) relationship: develops_from FBbt:00005559 ! anterior endoderm (Drosophila) [Term] id: FBbt:00025997 name: mesectoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00000000 ! germ layer derivative (Drosophila) relationship: develops_from UBERON:0000927 ! mesectoderm relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00025998 name: mesoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00000000 ! germ layer derivative (Drosophila) relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00025999 name: head mesoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00025998 ! mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000127 ! head mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:00026000 name: trunk mesoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00025998 ! mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000128 ! trunk mesoderm (Drosophila) [Term] id: FBbt:00026002 name: visceral mesoderm derivative (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: cur ! cur is_a: FBbt:00026000 ! trunk mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000130 ! visceral mesoderm (Drosophila) [Term] id: FBbt:00027000 name: anterior wing margin (Drosophila) namespace: fly_anatomy.ontology def: "Wing margin of the anterior compartment of the wing." [FBC:DOS] subset: cur ! cur is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of FBbt:00005378 ! wing margin (Drosophila) [Term] id: FBbt:00027001 name: posterior wing margin (Drosophila) namespace: fly_anatomy.ontology def: "Wing margin of the posterior compartment of the wing." [FBC:DOS] subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005378 ! wing margin (Drosophila) [Term] id: FBbt:00040000 name: adult antennal lobe projection neuron DC3 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DC3. Neurons of this class are derived from the sixth larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0203179, FlyBase:FBrf0206335, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "DC3 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00040001 name: lateral complex (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil block that lies anterior and lateral to the central complex, with which it is closely associated. Unlike components of the central complex, it is not separated from surrounding neuropils by a glial sheath." [FBC:BrainName] subset: BrainName ! BrainName project terms synonym: "LX" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00040002 name: ventromedial neuropils (Drosophila) namespace: fly_anatomy.ontology def: "A group of synaptic neuropil domains located above or and lateral to the esophagus, below the mushroom body calyx and inferior neuropils, behind the lateral accessory lobe and medial to the ventrolateral neuropils." [FBC:BrainName] comment: Despite the name, intended as a singular noun as in \"The United States\". subset: BrainName ! BrainName project terms synonym: "VMNPS" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00040003 name: non-connected developing system (Drosophila) namespace: fly_anatomy.ontology def: "The sum of all the anlagen and primordia that will develop into a single system." [FBC:DOS] comment: Note - this may be the precursor of a connected system that starts out non-connected, such as the tracheal system, or of a system that remains disconnected, e.g. functionally defined systems such as the endocrine system. is_a: FBbt:00007276 ! anatomical group (Drosophila) is_a: UBERON:0005423 ! developing anatomical structure [Term] id: FBbt:00040004 name: tract neuropil (Drosophila) namespace: fly_anatomy.ontology def: "The part of the neuropil consisting largely of neuron projections without synapses." [FBC:BrainName] synonym: "fibrous neuropil" RELATED [] is_a: FBbt:00007276 ! anatomical group (Drosophila) relationship: part_of UBERON:0002606 ! neuropil [Term] id: FBbt:00040005 name: synaptic neuropil (Drosophila) namespace: fly_anatomy.ontology def: "The part of the neuropil consisting largely of synapsing neuron projections." [FBC:BrainName] is_a: FBbt:00007276 ! anatomical group (Drosophila) relationship: part_of UBERON:0002606 ! neuropil [Term] id: FBbt:00040006 name: synaptic neuropil subdomain (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil region that is a subdivision of a synaptic neuropil domain." [FBC:BrainName] is_a: UBERON:0005162 ! multi-cell-component structure relationship: part_of FBbt:00040005 ! synaptic neuropil (Drosophila) disjoint_from: FBbt:00040007 ! synaptic neuropil domain (Drosophila) disjoint_from: FBbt:00100200 ! cortex region (Drosophila) [Term] id: FBbt:00040007 name: synaptic neuropil domain (Drosophila) namespace: fly_anatomy.ontology def: "Region of synaptic neuropil whose boundaries are largely discontinuities in the density of presynaptic terminals: high density in the synaptic neuropil domain, lower or zero density outside this region. These boundaries often correspond to a boundary with glial sheath, tract neuropil or cortex." [FBC:BrainName, FlyBase:FBrf0155900, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] subset: cur ! cur subset: larval_OF ! larval olfactory system synonym: "fibrous neuropil" RELATED [] synonym: "synaptic neuropil" RELATED [] is_a: UBERON:0005162 ! multi-cell-component structure relationship: part_of FBbt:00040005 ! synaptic neuropil (Drosophila) disjoint_from: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) disjoint_from: FBbt:00100200 ! cortex region (Drosophila) [Term] id: FBbt:00040008 name: synaptic neuropil layer (Drosophila) namespace: fly_anatomy.ontology def: "Laminar or concentric subdivision of a synaptic neuropil domain along its long axis delimited by a discontinuity in synaptic or fiber density." [FBC:KI&DS] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) [Term] id: FBbt:00040016 name: lobula layer 5 (Drosophila) namespace: fly_anatomy.ontology def: "Layer of the lobula that is fifth-most from the second optic-chiasm. It extends from the terminal arborizations of translobula plate neuron Tlp1 at the border of the fourth layer, to the extensive arborizations of lobula tangential neuron Lt7, which defines layer 6." [FlyBase:FBrf0049410] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003852 ! lobula (Drosophila) [Term] id: FBbt:00040017 name: lobula layer 6 (Drosophila) namespace: fly_anatomy.ontology def: "Layer of the lobula that is the most distant from the second optic chiasm. It contains the extensive arborizations of lobula tangential neuron Lt7." [FlyBase:FBrf0049410] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003852 ! lobula (Drosophila) [Term] id: FBbt:00040033 name: nodule (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003680 ! nodulus (Drosophila) [Term] id: FBbt:00040034 name: ellipsoid body layer (Drosophila) namespace: fly_anatomy.ontology def: "A concentric subdivision of the ellipsoid body resulting from the arborization patterns of the ring neurons (FBbt:00003649)." [FBC:BrainName, FlyBase:FBrf0049409, FlyBase:FBrf0111476] synonym: "ellipsoid body ring" RELATED [FlyBase:FBrf0049409] synonym: "layer of ellipsoid body" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00040035 name: fan-shaped body layer (Drosophila) namespace: fly_anatomy.ontology def: "Horizontal, laminar subdivision of the fan-shaped body that results from the stratification of large field neurons. There are 6 layers that run parallel to each other." [FlyBase:FBrf0049409, FlyBase:FBrf0210156] comment: Based on silver staining, Hanesch et al., (1989) claim that there are 6 layers in the fan-shaped body. In more recent work using the synaptic marker Nc82, Young and Armstrong (2010) state that there are 'roughly 8 layers', but note that 'establishing specific layers clearly' can often prove difficult. This ontology currently follows Hanesch. synonym: "layer of fan-shaped body" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003679 ! fan-shaped body (Drosophila) [Term] id: FBbt:00040036 name: segment of fan-shaped body (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of the fan-shaped body along the transverse axis resulting from the arrangement of vertical fibers." [FlyBase:FBrf0049409] comment: Pairs of adjacent segments in the fan-shaped body are closely associated, forming segment pairs that are more easily discernible than individual segments. synonym: "stave of fan-shaped body" RELATED [FlyBase:FBrf0049409] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003679 ! fan-shaped body (Drosophila) [Term] id: FBbt:00040037 name: inferior neuropils (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00045033 def: "Block of synaptic neuropil domains located below the superior neuropils, around the level of the mushroom body medial lobe and pedunculus." [FBC:BrainName] subset: BrainName ! BrainName project terms synonym: "INP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "inferior protocerebrum" EXACT [] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00040038 name: rubus (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "RUB" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00045037 ! crepine (Drosophila) [Term] id: FBbt:00040039 name: gorget (Drosophila) namespace: fly_anatomy.ontology def: "A thin, bilaterally paired synaptic neuropil domain that protrudes medially from below the inferior clamp to the area between the great commissure and the central complex. Its medial tip extends towards the noduli." [FBC:BrainName, VFB_vol:00040039] comment: The name gorget is taken from the name for a steel collar used to protect one's throat. The position of the gorget corresponds to the throat if the vest and epaulette are respectively taken to be body and shoulders. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "GOR" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040071 ! ventral complex (Drosophila) [Term] id: FBbt:00040040 name: epaulette (Drosophila) namespace: fly_anatomy.ontology def: "A small, bilaterally paired synaptic neuropil domain of the ventral complex, lying below the inferior clamp. It is separated from the vest by the inferior fiber system." [FBC:BrainName, VFB_vol:00040040] comment: The name is taken from the ornamental shoulder piece of military generals based on its shape and position relative to other sartorially named domains of the ventral complex. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "EPA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040071 ! ventral complex (Drosophila) [Term] id: FBbt:00040041 name: vest (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired synaptic neuropil domain that is the largest and most medial domain of the ventral complex. Its inferior (ventral) boundary with the saddle is demarcated by a glial sheath and the medial and lateral sides are flanked respectively by the esophagus and inferior fiber system." [FBC:BrainName, VFB_vol:00040041] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "VES" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040071 ! ventral complex (Drosophila) [Term] id: FBbt:00040042 name: posterior ventrolateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "A glomerular, bilaterally paired synaptic neuropil domain lying in front of the great commissure. It is contiguous with posterior lateral protocerebrum (PLP), which lies behind it. It houses many optic glomeruli formed by the terminals of neurons projecting from the optic lobe - though mainly just from the lobula. The boundary with the PLP is defined by the boundary between these glomeruli with different origins. The medial contours of this neuropil are defined by the medial extent of its constituent glomeruli." [FBC:BrainName, VFB_vol:00040042] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PVLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "posterior VLP" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007058 ! ventrolateral protocerebrum (Drosophila) [Term] id: FBbt:00040043 name: anterior ventrolateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "An aglomerular, bilaterally paired synaptic neuropil domain of the ventro-lateral protocerebrum that protrudes from the anterior brain between the optic lobe and the antennal lobe. It receives input from neurons projecting from the optic lobe." [FBC:BrainName, VFB_vol:00040043] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "AVLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "anterior VLP" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007058 ! ventrolateral protocerebrum (Drosophila) [Term] id: FBbt:00040044 name: posterior lateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "A bilaterally paired synaptic neuropil domain that contains many glomeruli and is located between the posterior slope and the optic lobe. The middle of the posterior lateral protocerebrum is separated from the posterior ventro-lateral protocerebrum (PVLP) by the great commissure, but above and below this the two neuropils are contiguous. It houses many optic glomeruli formed by the terminals of neurons projecting from the optic lobe - mainly from the lobula plate. The boundary with the PVLP is defined by the boundary between these glomeruli that have different origins. Boundaries with other neuropils, such as the posterior slope, are the boundaries between glomerular and non-glomerular neuropils." [FBC:BrainName, VFB_vol:00040044] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "posteriolateral protocerebrum" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045021 ! ventrolateral neuropils (Drosophila) [Term] id: FBbt:00040045 name: anterior superior lateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Anterior subregion of the superior lateral protocerebrum." [FBC:BrainName] comment: Boundaries defined by BrainName (used to define this term) differ slightly from those defined for mslpr in Otsuna and Ito, 2006. There is no prominent natural boundary that clearly separates the posterior and anterior superior lateral protocerebrum. A frontal plane extrapolated from the boundary of the PVLP and PLP, which corresponds to the anterioposterior level of the great commissure, is used as a practical boundary. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "ASLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "middle slpr" EXACT [FlyBase:FBrf0193607] synonym: "mslpr" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007054 ! superior lateral protocerebrum (Drosophila) [Term] id: FBbt:00040046 name: posterior superior lateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Posterior subregion of the superior lateral protocerebrum." [FBC:BrainName] comment: Boundaries defined by BrainName (used to define this term) differ slightly from those defined for pslpr in Otsuna and Ito, (2006). There is no prominent natural boundary that clearly separates the posterior and anterior superior lateral protocerebrum. A frontal plane extrapolated from the boundary of the PVLP and PLP, which corresponds to the anterioposterior level of the great commissure, is used as a practical boundary. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PSLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "posterior SLP" EXACT [] synonym: "posterior splr" RELATED [FlyBase:FBrf0193607] synonym: "pslpr" RELATED [FlyBase:FBrf0193607] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007054 ! superior lateral protocerebrum (Drosophila) [Term] id: FBbt:00040047 name: clamp (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil domain lying between the fan-shaped body, the protocerebral bridge and mushroom body pedunculus, including the area above and below the pedunculus (the space occupied by the pedunculus forms a deep tunnel-like recess on its inferior lateral side). It is slightly detached from the crepine neuropil, because the lateral complex lies between them. Few neurons in the clamp penetrate the pedunculus, but some enter the glomerular posterior lateral protocerebrum and posterior ventrolateral protocerebrum (PLP, PVLP), forming a characteristic cylindrical architecture around the pedunculus. Some fibers spanning the superior surface project into the superior arch commissure." [FBC:BrainName, VFB_vol:00040047] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "CL" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040037 ! inferior neuropils (Drosophila) [Term] id: FBbt:00040048 name: superior clamp (Drosophila) namespace: fly_anatomy.ontology def: "Superior (dorsal) part of the clamp, above the dorsal surface of the mushroom body pedunculus." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "SCL" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00040047 ! clamp (Drosophila) [Term] id: FBbt:00040049 name: inferior clamp (Drosophila) namespace: fly_anatomy.ontology def: "Inferior (ventral) part of the clamp, between the pedunculus and the central complex." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "ICL" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00040047 ! clamp (Drosophila) [Term] id: FBbt:00040050 name: inferior bridge (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most synaptic neuropil domain of the midline. It is the only synaptic neuropil domain outside of the central complex that is fused across the midline. It is located behind the fan-shaped body and below the protocerebral bridge." [FBC:BrainName, VFB_vol:00040050] comment: Historically regarded as part of the inferior medial protocerebrum. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "IB" EXACT [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040037 ! inferior neuropils (Drosophila) [Term] id: FBbt:00040051 name: prow (Drosophila) namespace: fly_anatomy.ontology def: "Anterior synaptic neuropil domain, below the opening of the esophageal foramen. It lies above the anterior-most area of the subesophageal ganglion and houses the superior pharyngeal sensory center, containing the terminals of peripheral axons from the pharyngeal nerve." [FBC:BrainName, VFB_vol:00040051] comment: Note, the prow is considered by some to be part of the subesophageal ganglion. The name 'prow' was taken from the anterior-most part of the hull of a boat. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PRW" EXACT [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045047 ! periesophageal neuropils (Drosophila) [Term] id: FBbt:00040052 name: superior pharyngeal sensory center (Drosophila) namespace: fly_anatomy.ontology def: "Region of the prow containing terminals of peripheral axons from the superior branch of the pharyngeal nerve." [FBC:BrainName] subset: BrainName ! BrainName project terms synonym: "SPhS" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "dorsal pharyngeal sensory center" EXACT [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00040051 ! prow (Drosophila) [Term] id: FBbt:00040054 name: inferior pharyngeal sensory center (Drosophila) namespace: fly_anatomy.ontology def: "Region of the subesophageal ganglion containing terminals of peripheral axons from the inferior branch of the pharyngeal nerve." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "IPhS" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "ventral pharyngeal sensory center" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00040055 name: labial sensory center (Drosophila) namespace: fly_anatomy.ontology def: "Region of the subesophageal ganglion containing terminals of peripheral axons from the posterior branch of the maxillary-labial nerve." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "LS" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "labellar sensory center" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00040056 name: posterior maxillary sensory center (Drosophila) namespace: fly_anatomy.ontology def: "Region of the subesophageal ganglion containing terminals of peripheral axons from the posterior secondary branch from the anterior branch of the maxillary-labial nerve." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PMS" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007158 ! maxillary segment of adult subesophageal ganglion (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00040057 name: anterior maxillary sensory center (Drosophila) namespace: fly_anatomy.ontology def: "Region of the subesophageal ganglion containing terminals of peripheral axons from the anterior secondary branch from the anterior branch of the maxillary-labial nerve." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "AMS" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007158 ! maxillary segment of adult subesophageal ganglion (Drosophila) relationship: part_of FBbt:00014013 ! adult subesophageal ganglion (Drosophila) [Term] id: FBbt:00040059 name: upper lateral accessory lobe (Drosophila) namespace: fly_anatomy.ontology def: "Upper region of the lateral accessory lobe (LAL), divided from the lower region by fibers extending from the LAL commissure, through the center of the LAL." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "ULAL" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003681 ! lateral accessory lobe (Drosophila) [Term] id: FBbt:00040060 name: gall (Drosophila) namespace: fly_anatomy.ontology def: "A small region of the lateral accessory lobe that protrudes from its superior-lateral tip, just medial to the ventro-lateral protocerebrum and beneath the spur of the mushroom body. It is densely packed with synapses and sparsely surrounded by glia." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "GA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003681 ! lateral accessory lobe (Drosophila) [Term] id: FBbt:00040061 name: lower lateral accessory lobe (Drosophila) namespace: fly_anatomy.ontology def: "Lower region of the lateral accessory lobe (LAL), divided from the upper region by fibers extending from the LAL commissure, through the center of the LAL." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "LLAL" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003681 ! lateral accessory lobe (Drosophila) [Term] id: FBbt:00040062 name: anterior superior medial protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Region of the superior medial protocerebrum anterior to the fan-shaped body." [FBC:BrainName] comment: Because the fan-shaped body protrudes deeply into the SMP, its superior apex is used as a practical boundary landmark between anterior and posterior superior medial protocerebrum (BrainName). subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "ASMP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "anterior SLP" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007055 ! superior medial protocerebrum (Drosophila) [Term] id: FBbt:00040063 name: posterior superior medial protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Region of the superior medial protocerebrum posterior to the fan-shaped body." [FBC:BrainName] comment: Because the fan-shaped body protrudes deeply into the SMP, its superior apex is used as a practical boundary landmark between anterior and posterior superior medial protocerebrum (BrainName). subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PSMP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "posterior SMP" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007055 ! superior medial protocerebrum (Drosophila) [Term] id: FBbt:00040069 name: synaptic neuropil segment (Drosophila) namespace: fly_anatomy.ontology def: "Laminar or radial subdivision of a synaptic neuropil domain along its short axis delimited by a discontinuity in synaptic or fiber density." [FBC:KI&DS] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) [Term] id: FBbt:00040070 name: ellipsoid body segment (Drosophila) namespace: fly_anatomy.ontology def: "A radial subdivision of the ellipsoid body arising from the arborization patterns of small field radial fibers. There are 16 of these per ellipsoid body, 8 per hemisphere numbered 1-8, top to bottom." [FBC:BrainName, FlyBase:FBrf0049409] synonym: "ellipsoid body glomerulus" EXACT [FlyBase:FBrf0111476] synonym: "ellipsoid body sector" EXACT [FlyBase:FBrf0049409] synonym: "segment of ellipsoid body" EXACT [] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003678 ! ellipsoid body (Drosophila) [Term] id: FBbt:00040071 name: ventral complex (Drosophila) namespace: fly_anatomy.ontology def: "A group of synaptic neuropil domains located below (ventral to) the central complex, behind the lateral accessory lobes and in front of the great commissure." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "VX" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of FBbt:00040002 ! ventromedial neuropils (Drosophila) [Term] id: FBbt:00040072 name: posterior slope (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil domain that is the inferior (ventral) part of the posterior supraesophageal ganglion, covering the area between the inferior bridge and the subesophageal ganglion with its superior part lying behind the ventral complex. It contains extensive arborizations of ascending and descending neurons. Its superior boundary is the level above which such arborizations do not occur. It also contains the terminals of axons from the ocellar ganglia, projecting via the ocellar nerve." [FBC:BrainName, VFB_vol:00040072] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PS" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040002 ! ventromedial neuropils (Drosophila) [Term] id: FBbt:00041000 name: synaptic neuropil block (Drosophila) namespace: fly_anatomy.ontology def: "A closely associated group of synaptic neuropil domains." [FBC:KI&DS] synonym: "level 1 neuropil" EXACT [FBC:BrainName] is_a: FBbt:00007276 ! anatomical group (Drosophila) relationship: part_of FBbt:00040005 ! synaptic neuropil (Drosophila) [Term] id: FBbt:00045000 name: lamina dorsal rim area (Drosophila) namespace: fly_anatomy.ontology def: "Region of the lamina that receives input from the dorsal rim ommatidia." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "LDRA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) [Term] id: FBbt:00045001 name: plexiform medulla (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "MEP" EXACT [] synonym: "PLME" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "medulla proper" EXACT [] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003748 ! medulla (Drosophila) [Term] id: FBbt:00045002 name: dorsal rim area of medulla (Drosophila) namespace: fly_anatomy.ontology def: "Region of the medulla that receives input from the dorsal rim ommatidia." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "MEDRA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00045001 ! plexiform medulla (Drosophila) [Term] id: FBbt:00045003 name: accessory medulla (Drosophila) namespace: fly_anatomy.ontology def: "A small area of the neuropil on the frontomedial edge of the medulla, close to the outgoing fibers running from the serpentine layer to the posterior optic commissure." [FBC:BrainName, FlyBase:FBrf0193849] subset: BrainName ! BrainName project terms synonym: "AME" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "aMe" EXACT [FlyBase:FBrf0193849] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003748 ! medulla (Drosophila) [Term] id: FBbt:00045004 name: lobula complex (Drosophila) namespace: fly_anatomy.ontology def: "A synaptic neuropil block consisting of the two medial-most synaptic neuropil domains of the optic lobe: the lobula and the lobula plate." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "LOX" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00045005 name: mushroom body medial calyx (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "MCA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003685 ! mushroom body calyx (Drosophila) [Term] id: FBbt:00045006 name: mushroom body lateral calyx (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "LCA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003685 ! mushroom body calyx (Drosophila) [Term] id: FBbt:00045007 name: mushroom body accessory calyx (Drosophila) namespace: fly_anatomy.ontology def: "A small subregion of the main mushroom body calyx that does not receive direct olfactory input. It protrudes from the anterior-dorsal edge of the main calyx to the protocerebral area above and anterior to the inner antennocerebral tract." [FlyBase:FBrf0205263] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "ACA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00045008 name: pedunculus neck (Drosophila) namespace: fly_anatomy.ontology def: "The proximal (posterior or posterior superior) point of the pedunculus at which Kenyon cell fibers send dendrites to the calyx." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PEDN" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003687 ! mushroom body pedunculus (Drosophila) relationship: part_of FBbt:00007453 ! adult pedunculus (Drosophila) [Term] id: FBbt:00045009 name: pedunculus divide (Drosophila) namespace: fly_anatomy.ontology def: "The anterior end of the pedunculus, where the Kenyon cell fibers bifurcate to project to the vertical and medial lobes." [FBC:BrainName] comment: Considering that the Kenyon cell fiber projecting from the calyx divide rather than meet at this point, the term 'pedunculus junction' is somewhat misleading. Similarly, to prevent ambiguity, the terms 'heel' and 'knee' have been avoided as they are also used for referring to the mushroom body spur. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "PEDD" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "heel" EXACT [] synonym: "knee" EXACT [] synonym: "lobe junction" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007453 ! adult pedunculus (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00045010 name: mushroom body spur (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003696 def: "Synaptic neuropil domain that is a small protrusion, lateral to the anterior end of the pedunculus." [FBC:BrainName, VFB_vol:00045010] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "SPU" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "heel of mushroom body" EXACT [] synonym: "knee of mushroom body" RELATED [] synonym: "mushroom body heel" EXACT [] synonym: "spur" EXACT [] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003688 ! lobe system of mushroom body (Drosophila) relationship: part_of UBERON:0001058 ! mushroom body [Term] id: FBbt:00045014 name: mushroom body alpha accessory calyx fibers (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "vertical lobelet" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005407 ! mushroom body vertical lobe (Drosophila) [Term] id: FBbt:00045018 name: mushroom body beta accessory calyx fibers (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "medial lobelet" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005408 ! mushroom body medial lobe (Drosophila) [Term] id: FBbt:00045020 name: central body (Drosophila) namespace: fly_anatomy.ontology def: "Region of synaptic neuropil consisting of the fan-shaped body and the ellipsoid body." [FBC:BrainName, VFB_vol:00045020] subset: BrainName ! BrainName project terms synonym: "CB" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00003632 ! adult central complex (Drosophila) [Term] id: FBbt:00045021 name: ventrolateral neuropils (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil block located along the ventrolateral side of the adult central brain." [FBC:BrainName] comment: Despite the name, intended as a singular noun as in \"The United States\". subset: BrainName ! BrainName project terms synonym: "VLNP" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00045027 name: inferior ventrolateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "An aglomerular, bilaterally paired synaptic neuropil domain that is the inferior-most domain of the ventrolateral protocerebrum, extending down to the level of the subesophageal ganglion. It receives synaptic input from the saddle and the antennal mechanosensory and motor center (AMMC) within it. This includes direct sensory input from antennal mechanosensory neurons that also innervate the AMMC." [FBC:BrainName, VFB_vol:00045027] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "IVLP" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "anterior VLP" RELATED [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007058 ! ventrolateral protocerebrum (Drosophila) [Term] id: FBbt:00045030 name: superior neuropils (Drosophila) namespace: fly_anatomy.ontology def: "A block of synaptic neuropil domains arranged in a layer covering the superior (dorsal) surface of the brain." [FBC:BrainName] comment: Despite the name, intended as a singular noun as in 'The United States'. subset: BrainName ! BrainName project terms synonym: "SNP" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00045032 name: superior intermediate protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "A small synaptic neuropil domain located around and posterior to the mushroom body vertical lobe. This domain is rich in loose fibers that project from the anterior optic tubercle in a medial-posterior direction. It also houses the arborizations of many neurons that connect with the vertical lobes." [FBC:BrainName, VFB_vol:00045032] subset: BrainName ! BrainName project terms synonym: "SIP" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00045030 ! superior neuropils (Drosophila) [Term] id: FBbt:00045037 name: crepine (Drosophila) namespace: fly_anatomy.ontology def: "A thin, bilaterally paired synaptic neuropil domain that wraps around the medial lobe of the mushroom body. Many neurons in this domain enter the lobes to form extensive connections with Kenyon cell fibers." [FBC:BrainName, VFB_vol:00045037] comment: The name crepine is used in French cuisine to refer to a slice of meat wrapped around some delicacy. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "CRE" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040037 ! inferior neuropils (Drosophila) [Term] id: FBbt:00045039 name: antler (Drosophila) namespace: fly_anatomy.ontology def: "Thin, elongated, antler-shaped, bilaterally paired synaptic neuropil domain spanning from the inferior bridge to the inferior edge of the superior lateral protocerebrum. It runs through the space between the protocerebral bridge and the fan-shaped body, along the medial surface of the inner antenno-cerebral tract." [FBC:BrainName, VFB_vol:00045039] subset: BrainName ! BrainName project terms synonym: "ATL" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00040037 ! inferior neuropils (Drosophila) [Term] id: FBbt:00045040 name: superior posterior slope (Drosophila) namespace: fly_anatomy.ontology def: "Superior (dorsal) part of the posterior slope, above the plane of the inferior VLP commissure and the posterior optic commissure. It lies behind the great commissure, gorget and vest. It has no clear glial boundary with the surrounding neuropils." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "SPS" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00040072 ! posterior slope (Drosophila) [Term] id: FBbt:00045042 name: delta (Drosophila) namespace: fly_anatomy.ontology subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00045046 ! inferior posterior slope (Drosophila) [Term] id: FBbt:00045046 name: inferior posterior slope (Drosophila) namespace: fly_anatomy.ontology def: "Inferior (ventral) part of the posterior slope, below the plane of the inferior VLP commissure and the posterior optic commissure." [FBC:BrainName] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "IPS" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00040072 ! posterior slope (Drosophila) [Term] id: FBbt:00045047 name: periesophageal neuropils (Drosophila) namespace: fly_anatomy.ontology def: "Group of synaptic neuropil domains located below and lateral to the esophagus, but above the subsoesphageal ganglion." [FBC:BrainName] comment: Despite the name, intended as a singular noun as in \"The United States\". subset: BrainName ! BrainName project terms synonym: "PONP" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00041000 ! synaptic neuropil block (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00045048 name: saddle (Drosophila) namespace: fly_anatomy.ontology def: "Synaptic neuropil domain covering the dorsal surface of the subesophageal ganglion. It contains the antennal mechanosensory and motor center (AMMC)." [FBC:BrainName, VFB_vol:00045048] subset: BrainName ! BrainName project terms synonym: "SAD" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) relationship: part_of FBbt:00045047 ! periesophageal neuropils (Drosophila) [Term] id: FBbt:00045050 name: flange (Drosophila) namespace: fly_anatomy.ontology def: "A small, bilaterally paired, triangular synaptic neuropil domain that protrudes from the anterior area of the saddle on both sides of the anterior-most esophagus foramen. It lies at the root of the median bundle." [FBC:BrainName, VFB_vol:00045050] subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "FLA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) relationship: part_of FBbt:00045047 ! periesophageal neuropils (Drosophila) [Term] id: FBbt:00045051 name: cantle (Drosophila) namespace: fly_anatomy.ontology def: "A small, bilaterally paired, triangular synaptic neuropil domain that lies at the posterior end of the saddle. It is clearly demarcated by glial boundaries." [FBC:BrainName, VFB_vol:00045051] comment: The name 'cantle' was taken from the seat-back part of the horse-riding saddle. subset: BrainName ! BrainName project terms subset: BrainName_Embargo ! Terms to hold back pending BrainName paper publication. synonym: "CAN" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "PONPp" EXACT [FBC:BrainName] synonym: "posterior perioesophageal neuropil" EXACT [FBC:BrainName] is_a: FBbt:00040007 ! synaptic neuropil domain (Drosophila) relationship: part_of FBbt:00007146 ! adult deuterocerebrum (Drosophila) relationship: part_of FBbt:00045047 ! periesophageal neuropils (Drosophila) [Term] id: FBbt:00057000 name: early-mid elongation-stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "An elongating spermatid, 200-500 micrometers in length and in which nuclear shaping has begun." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00005310 ! elongation stage spermatid (Drosophila) relationship: develops_from FBbt:00057174 ! comet stage spermatid (Drosophila) relationship: develops_from FBbt:00057175 ! early elongation stage spermatid (Drosophila) [Term] id: FBbt:00057001 name: anterior-posterior subdivision of organism (Drosophila) namespace: fly_anatomy.ontology subset: larval_OF ! larval olfactory system is_a: UBERON:0000475 ! organism subdivision [Term] id: FBbt:00057002 name: late elongation-stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A nearly fully elongated spermatid >1.2 mm length, with a needle-shaped nucleus." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00005310 ! elongation stage spermatid (Drosophila) relationship: develops_from FBbt:00057003 ! mid-late elongation-stage spermatid (Drosophila) [Term] id: FBbt:00057003 name: mid-late elongation-stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "An elongating spermatid 0.8-1.2 mm in length, with a nucleus resembling a canoe." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00005310 ! elongation stage spermatid (Drosophila) relationship: develops_from FBbt:00057000 ! early-mid elongation-stage spermatid (Drosophila) [Term] id: FBbt:00057004 name: spermatocyte cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "A cyst cell which is part of a spermatocyte cyst." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00004931 ! cyst cell (Drosophila) relationship: part_of FBbt:00005258 ! spermatocyte cyst (Drosophila) [Term] id: FBbt:00057005 name: polar primary spermatocyte cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "A cyst cell which is part of a polar spermatocyte cyst." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00057004 ! spermatocyte cyst cell (Drosophila) [Term] id: FBbt:00057006 name: apolar primary spermatocyte cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "A cyst cell which is part of an apolar spermatocyte cyst." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00057004 ! spermatocyte cyst cell (Drosophila) [Term] id: FBbt:00057007 name: mature primary spermatocyte cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "A cyst cell which is part of a mature spermatocyte cyst." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00057004 ! spermatocyte cyst cell (Drosophila) [Term] id: FBbt:00057008 name: spermatid cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "Cyst cell of a spermatid cyst." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00004931 ! cyst cell (Drosophila) relationship: part_of FBbt:00005287 ! spermatid cyst (Drosophila) [Term] id: FBbt:00057009 name: head cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "The member of a cyst cell pair that envelopes the head of a developing spermatid." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00057008 ! spermatid cyst cell (Drosophila) [Term] id: FBbt:00057010 name: tail cyst cell (Drosophila) namespace: fly_anatomy.ontology def: "The member of a cyst cell pair that envelopes the tail of a developing spermatid. During spermatid elongation, tail cyst cells become very long and thin as they extend to cover the growing sperm flagellum." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim subset: cur ! cur is_a: FBbt:00057008 ! spermatid cyst cell (Drosophila) [Term] id: FBbt:00057011 name: male germline cell (Drosophila) namespace: fly_anatomy.ontology def: "Cell that develops into or is itself a spermatozoon." [FBC:DOS] subset: FlyTed ! Testis slim is_a: FBbt:00004860 ! germline cell (Drosophila) [Term] id: FBbt:00057012 name: female germline cell (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00004860 ! germline cell (Drosophila) [Term] id: FBbt:00057013 name: terminal epithelium of testis (Drosophila) namespace: fly_anatomy.ontology def: "A columnar epithelium inside the testis basal lamina in the terminal (basal) 10% of the testis." [FlyBase:FBrf0024468, FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: UBERON:0000485 ! simple columnar epithelium relationship: part_of UBERON:0004910 ! epithelium of male gonad [Term] id: FBbt:00057014 name: terminal epithelial cell of testis (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial cell of the terminal epithelium of the testis. These cells engulf the head cyst cell of a spermatid cyst during coiling, so anchoring the head of the coiling spermatid. These cells also phagocytose the waste bags and cyst cells left over at the end of spermatogenesis." [FlyBase:FBrf0024468, FlyBase:FBrf0064778] subset: FlyTed ! Testis slim subset: cur ! cur is_a: CL:0000066 ! epithelial cell relationship: part_of FBbt:00057013 ! terminal epithelium of testis (Drosophila) [Term] id: FBbt:00057145 name: meiotic primary spermatocyte (Drosophila) namespace: fly_anatomy.ontology def: "Primary spermatocyte during meiosis I (GO:0007127)." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00005286 ! primary spermatocyte (Drosophila) [Term] id: FBbt:00057146 name: primary spermatocyte in meiotic prophase I (Drosophila) namespace: fly_anatomy.ontology def: "Primary spermatocyte during meiotic prophase 1 (GO:0007128)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057145 ! meiotic primary spermatocyte (Drosophila) relationship: develops_from FBbt:00057169 ! mature primary spermatocyte (Drosophila) [Term] id: FBbt:00057147 name: primary spermatocyte in meiotic metaphase I (Drosophila) namespace: fly_anatomy.ontology def: "Primary spermatocyte during meiotic metaphase I (GO:0007132)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057145 ! meiotic primary spermatocyte (Drosophila) relationship: develops_from FBbt:00057146 ! primary spermatocyte in meiotic prophase I (Drosophila) [Term] id: FBbt:00057148 name: primary spermatocyte in meiotic telophase I (Drosophila) namespace: fly_anatomy.ontology def: "Primary spermatocyte during meiotic telophase 1 (GO:0007134)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057145 ! meiotic primary spermatocyte (Drosophila) relationship: develops_from FBbt:00057149 ! primary spermatocyte in meiotic anaphase I (Drosophila) [Term] id: FBbt:00057149 name: primary spermatocyte in meiotic anaphase I (Drosophila) namespace: fly_anatomy.ontology def: "Primary spermatocyte during meiotic anaphase I (GO:0007133)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057145 ! meiotic primary spermatocyte (Drosophila) relationship: develops_from FBbt:00057147 ! primary spermatocyte in meiotic metaphase I (Drosophila) [Term] id: FBbt:00057150 name: interphase secondary spermatocyte (Drosophila) namespace: fly_anatomy.ontology def: "Spermatocyte during interphase between the two meiotic divisions." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: CL:0000657 ! secondary spermatocyte relationship: develops_from FBbt:00057148 ! primary spermatocyte in meiotic telophase I (Drosophila) [Term] id: FBbt:00057151 name: secondary spermatocyte in meiotic telophase II (Drosophila) namespace: fly_anatomy.ontology def: "Secondary spermatocyte during meiotic telophase II (GO:0007139)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057155 ! meiotic secondary spermatocyte (Drosophila) relationship: develops_from FBbt:00057154 ! secondary spermatocyte in meiotic anaphase II (Drosophila) [Term] id: FBbt:00057152 name: secondary spermatocyte in meiotic metaphase II (Drosophila) namespace: fly_anatomy.ontology def: "Secondary spermatocyte during meiotic metaphase II (GO:0007137)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057155 ! meiotic secondary spermatocyte (Drosophila) relationship: develops_from FBbt:00057153 ! secondary spermatocyte in meiotic prophase II (Drosophila) [Term] id: FBbt:00057153 name: secondary spermatocyte in meiotic prophase II (Drosophila) namespace: fly_anatomy.ontology def: "Secondary spermatocyte during meiotic prophase II (GO:0007136)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057155 ! meiotic secondary spermatocyte (Drosophila) relationship: develops_from FBbt:00057150 ! interphase secondary spermatocyte (Drosophila) [Term] id: FBbt:00057154 name: secondary spermatocyte in meiotic anaphase II (Drosophila) namespace: fly_anatomy.ontology def: "Secondary spermatocyte during meiotic anaphase II (GO:0007138)." [FlyBase:FBrf0064778] comment: Make into XP once OBO:rel 'during' is legal. subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057155 ! meiotic secondary spermatocyte (Drosophila) relationship: develops_from FBbt:00057152 ! secondary spermatocyte in meiotic metaphase II (Drosophila) [Term] id: FBbt:00057155 name: meiotic secondary spermatocyte (Drosophila) namespace: fly_anatomy.ontology def: "Secondary spermatocyte during meiosis II (GO:0007135)." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: CL:0000657 ! secondary spermatocyte [Term] id: FBbt:00057167 name: polar primary spermatocyte (Drosophila) namespace: fly_anatomy.ontology def: "Early primary spermatocyte with a spherical, asymmetrically placed nucleus and with mitochondria aggregated at the pole of the cell opposite the nucleus." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00005286 ! primary spermatocyte (Drosophila) relationship: develops_from FBbt:00005260 ! secondary spermatogonium (Drosophila) [Term] id: FBbt:00057168 name: apolar primary spermatocyte (Drosophila) namespace: fly_anatomy.ontology def: "Mid primary spermatocyte, with a large nucleus which has an undulating surface. The nucleus of this cell is in the process of becoming surrounded by a second nuclear membrane, and has a large nucleolus filled with irregularly shaped cavities." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00005286 ! primary spermatocyte (Drosophila) relationship: develops_from FBbt:00057167 ! polar primary spermatocyte (Drosophila) [Term] id: FBbt:00057169 name: mature primary spermatocyte (Drosophila) namespace: fly_anatomy.ontology def: "Late, fully grown primary spermatocyte with a large central nucleus, blocky in appearance, often with indentations or grooves, containing Y-loops and a prominent nucleolus." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00005286 ! primary spermatocyte (Drosophila) relationship: develops_from FBbt:00057168 ! apolar primary spermatocyte (Drosophila) [Term] id: FBbt:00057170 name: agglomeration stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A round spermatid in which the mitochondria have coalesced into one or more agglomerations that together form a crescent shaped mass, and in which a protein body has formed in the nucleus." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00005289 ! pre-elongation spermatid (Drosophila) relationship: develops_from FBbt:00057172 ! coalescence stage spermatid (Drosophila) [Term] id: FBbt:00057171 name: clew stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A round spermatid in which fusion of mitochondria into a single, spherical mass with a clew-like (ball of string) arrangement is complete. During this stage the centriole inserts into the base of the nucleus to become the basal body." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00005289 ! pre-elongation spermatid (Drosophila) relationship: develops_from FBbt:00057170 ! agglomeration stage spermatid (Drosophila) [Term] id: FBbt:00057172 name: coalescence stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A round spermatid with a crescent-shaped group of mitochondria at the same pole of the cell as the centriole and with a nucleus that lacks a protein body." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: CL:0000018 ! spermatid relationship: develops_from FBbt:00057151 ! secondary spermatocyte in meiotic telophase II (Drosophila) [Term] id: FBbt:00057174 name: comet stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "An early elongation-stage spermatid of length 35-120 micrometers resembling a comet, with a divided Nebenkern." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057175 ! early elongation stage spermatid (Drosophila) relationship: develops_from FBbt:00057176 ! leaf blade stage spermatid (Drosophila) [Term] id: FBbt:00057175 name: early elongation stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "A spermatid which has initiated axoneme elongation, but which is relatively short (up to 200 micrometers in length) and retains a round nucleus." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00005310 ! elongation stage spermatid (Drosophila) [Term] id: FBbt:00057176 name: leaf blade stage spermatid (Drosophila) namespace: fly_anatomy.ontology def: "An early elongation-stage spermatid of length 15-35 micrometers, with a Nebenkern resembling an emerging grass leaf (lanceolate)." [FlyBase:FBrf0064778] subset: FT_new ! FlyTed temp subset for edit tracking purposes subset: FlyTed ! Testis slim is_a: FBbt:00057175 ! early elongation stage spermatid (Drosophila) relationship: develops_from FBbt:00004945 ! onion stage spermatid (Drosophila) [Term] id: FBbt:00067000 name: antennal trichoid sensillum at3 (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory trichoid sensillum of antennal segment 3 that is innervated by 3 ORNs. It is distinguishable from at4 by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (2a, 19a/b and 43a; Cuoto et al., 2005; de Bruyne and Baker, 2008)." [FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007350 ! antennal sensillum trichodeum T3 (Drosophila) [Term] id: FBbt:00067001 name: adult olfactory receptor neuron Or2a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or2a (FBgn0023523). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA4 medial compartment and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA4 medial compartment. Its dendrite transduces signals from trichoid sensillum at3." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or2a)" EXACT [FlyBrain_NDB:10397] synonym: "ORN at3A" EXACT [PMID:18535862] synonym: "adult ORN Or2a" EXACT [] synonym: "odorant receptor neuron DA4m" RELATED [] synonym: "odorant receptor neuron Or2a" EXACT [] xref: FlyBrain_NDB:10397 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067000 ! antennal trichoid sensillum at3 (Drosophila) [Term] id: FBbt:00067002 name: antennal basiconic sensillum ab2 (Drosophila) namespace: fly_anatomy.ontology def: "A large olfactory basiconic sensillum of the antenna, innervated by 2 ORNs. It is distinguishable from ab3 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (59b and 85a/33b; Cuoto et al., 2005)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305] comment: Based on its size and the number of innervating ORNS, this is likely to correspond to LB-I (FBbt:00007355) or LB-II2 (FBbt:00007356) of Shanbhag et al., 1999, but it is not clear which. subset: olfactory_system_draft ! adult olfactory system model synonym: "antennal large basiconic sensillum ab2" EXACT [] is_a: FBbt:00004175 ! large sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00067003 name: adult olfactory receptor neuron Or59b (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or59b (FBgn0034865). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM4. Its dendrite transduces signals from antennal basiconic sensillum ab2." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or59b)" EXACT [FlyBrain_NDB:10410] synonym: "ORN ab2A" RELATED [FlyBase:FBrf0179238] synonym: "adult ORN Or59b" EXACT [] synonym: "odorant receptor neuron DM4" RELATED [] synonym: "odorant receptor neuron Or59b" EXACT [] xref: FlyBrain_NDB:10410 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067002 ! antennal basiconic sensillum ab2 (Drosophila) [Term] id: FBbt:00067004 name: antennal basiconic sensillum ab4 (Drosophila) namespace: fly_anatomy.ontology def: "Thin antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it 7a and 56/33a; Cuoto et al., 2005)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007420 ! antennal basiconic sensillum TB-2 (Drosophila) [Term] id: FBbt:00067005 name: adult olfactory receptor neuron Or7a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or7a (FBgn0030016). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL5 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL5. Its dendrite transduces signals from antennal basiconic sensillum ab4." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or7a)" EXACT [FlyBrain_NDB:10420] synonym: "ORN ab4A" EXACT [FlyBase:FBrf0179238] synonym: "adult ORN Or7a" EXACT [] synonym: "odorant receptor neuron DL5" RELATED [] synonym: "odorant receptor neuron Or7a" EXACT [] xref: FlyBrain_NDB:10420 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067004 ! antennal basiconic sensillum ab4 (Drosophila) [Term] id: FBbt:00067006 name: maxillary palp basiconic sensillum pb3 (Drosophila) namespace: fly_anatomy.ontology def: "Basiconic olfactory sensillum of maxillary palp that is innervated by the dendrites of two ORNs. It is distinguishable from pb1 and pb2 by its odor response profile (Goldman et al., 2005) and the identity of the ORNs that innervate it (59c and 85d; Cuoto et al., 2005; Goldman et al., 2005)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00004159 ! maxillary palp sensillum basiconicum (Drosophila) relationship: part_of FBbt:00004546 ! maxillary palpus (Drosophila) [Term] id: FBbt:00067007 name: adult olfactory receptor neuron Or59c (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or59c (FBgn0034866). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus 1 and the other fasciculating with the antennal commissure and innervating the contralateral `antennal lobe glomerulus VM7v` (FBbt:00007092). Its dendrite transduces signals from `maxillary palp basiconic sensillum pb3` (FBbt:00067006)." [FlyBase:FBrf0184216, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or59c)" EXACT [FlyBrain_NDB:10411] synonym: "ORN pb3A" EXACT [FlyBase:FBrf0184216] synonym: "adult ORN Or59c" EXACT [] synonym: "olfactory receptor neuron 1" RELATED [] synonym: "olfactory receptor neuron Or59c" EXACT [] xref: FlyBrain_NDB:10411 is_a: FBbt:00007353 ! maxillary palp olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067006 ! maxillary palp basiconic sensillum pb3 (Drosophila) [Term] id: FBbt:00067008 name: antennal basiconic sensillum ab8 (Drosophila) namespace: fly_anatomy.ontology def: "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from other small bidendritic ab sensilla by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (43b and 9a)." [FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00004176 ! small sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00067009 name: adult olfactory receptor neuron Or9a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or9a (FBgn0030204). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM3. Its dendrite transduces signals from antennal basiconic sensillum ab8." [FlyBase:FBrf0187305] comment: Antennal basiconic sensillum ab4 is bidendritic. According to Hallem et al., 2004 (FBrf0179238), adult ORN 43b corresponds to the functionally defined ORN ab8A. We can therefore deduce that adult ORN 9a corresponds to ORN ab8B. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or9a)" EXACT [FlyBrain_NDB:10430] synonym: "ORN pb9A" EXACT [PMID:18535862] synonym: "adult ORN Or9a" EXACT [] synonym: "odorant receptor neuron Or9a" EXACT [] synonym: "odorant receptor neuron VM3" RELATED [] xref: FlyBrain_NDB:10430 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067008 ! antennal basiconic sensillum ab8 (Drosophila) [Term] id: FBbt:00067010 name: antennal trichoid sensillum at4 (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory trichoid sensillum of antennal segment 3 that is innervated by 3 ORNs. It is distinguishable from at3 by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (47b, 65a/b/c, 88a; Cuoto et al., 2005; de Bruyne and Baker, 2008)." [FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007350 ! antennal sensillum trichodeum T3 (Drosophila) [Term] id: FBbt:00067011 name: adult olfactory receptor neuron Or65 (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or65 (Or65a ; FBgn0041625, Or65b ; FBgn0041624, Or65c ; FBgn0041623). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL3. Its dendrite transduces signals from antennal trichoid sensillum at4." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or65a/b/c)" EXACT [FlyBrain_NDB:10412] synonym: "ORN at4B" EXACT [PMID:18535862] synonym: "adult ORN Or65" EXACT [] synonym: "odorant receptor neuron DL3" RELATED [] synonym: "odorant receptor neuron Or65" EXACT [] xref: FlyBrain_NDB:10412 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067010 ! antennal trichoid sensillum at4 (Drosophila) [Term] id: FBbt:00067012 name: antennal basiconic sensillum ab1 (Drosophila) namespace: fly_anatomy.ontology def: "A large olfactory basiconic sensillum of the antenna, innervated by 4 ORNs." [FlyBase:FBrf0137067, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007357 ! basiconic sensillum LB-II4 (Drosophila) [Term] id: FBbt:00067013 name: adult olfactory receptor neuron Or10a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or10a (FBgn0030298). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL1. Its dendrite transduces signals from antennal basiconic sensillum ab1." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or10a)" EXACT [FlyBrain_NDB:10392] synonym: "ORN ab1D" EXACT [FlyBase:FBrf0208960] synonym: "adult ORN Or10a" EXACT [] synonym: "odorant receptor neuron DL1" RELATED [] synonym: "odorant receptor neuron Or10a" EXACT [] xref: FlyBrain_NDB:10392 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067012 ! antennal basiconic sensillum ab1 (Drosophila) [Term] id: FBbt:00067014 name: adult antennal lobe projection neuron DC1 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DC1. This neuron is born from the 11th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0183938, FlyBase:FBrf0203179, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "DC1 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067015 name: antennal intermediate sensillum ai1 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007359 ! sensillum intermedia of antennal segment 3 (Drosophila) [Term] id: FBbt:00067016 name: adult olfactory receptor neuron Or13a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or13a (FBgn0030715). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DC2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DC2. Its dendrite transduces signals from antennal intermediate sensillum ai1." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or13a)" EXACT [FlyBrain_NDB:10393] synonym: "ORN ai1B" EXACT [PMID:18535862] synonym: "adult ORN Or13a" EXACT [] synonym: "odorant receptor neuron DC2" RELATED [] synonym: "odorant receptor neuron Or13a" EXACT [] xref: FlyBrain_NDB:10393 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067015 ! antennal intermediate sensillum ai1 (Drosophila) [Term] id: FBbt:00067017 name: adult antennal lobe projection neuron DM3 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM3. Neurons of this class are born during the 18th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0183938, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "DM3 adPN" EXACT [] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067018 name: adult olfactory receptor neuron Or19 (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or19a (FBgn0041626) and Or19b (FBgn0062565). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DC1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DC1. Its dendrite transduces signals from antennal trichoid sensillum at3." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or19a/b)" EXACT [FlyBrain_NDB:10394] synonym: "ORN at3B" EXACT [PMID:18535862] synonym: "adult ORN Or19" EXACT [] synonym: "odorant receptor neuron DC1" RELATED [] synonym: "odorant receptor neuron Or19" EXACT [] xref: FlyBrain_NDB:10394 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067000 ! antennal trichoid sensillum at3 (Drosophila) [Term] id: FBbt:00067019 name: antennal basiconic sensillum ab10 (Drosophila) namespace: fly_anatomy.ontology def: "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from other small bidendritic ab sensilla by its odor response profile (de Bruyne and Baker, 2008) and the identity of the ORNs that innervate it (49a/85f and 67a)." [FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model synonym: "Ab10" EXACT [PMID:18535862] is_a: FBbt:00004176 ! small sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00067020 name: adult olfactory receptor neuron Or67a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or67a (FBgn0036009). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM6 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM6. Its dendrite transduces signals from antennal basiconic sensillum ab10." [FlyBase:FBrf0187305] comment: Antennal basiconic sensillum ab4 is bidendritic. According to Hallem et al., 2004 (FBrf0179238), adult ORN 49a corresponds to the functionally defined ORN ab10A. We can therefore deduce that adult ORN 67a corresponds to ORN ab10B. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or67a)" EXACT [FlyBrain_NDB:10413] synonym: "ORN ab10B" EXACT [PMID:18535862] synonym: "adult ORN Or67a" EXACT [] synonym: "odorant receptor neuron DM6" RELATED [] synonym: "odorant receptor neuron Or67a" EXACT [] xref: FlyBrain_NDB:10413 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067019 ! antennal basiconic sensillum ab10 (Drosophila) [Term] id: FBbt:00067021 name: adult antennal lobe projection neuron DP1m adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DP1m. This is the first neuron born from the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729] subset: olfactory_system_draft ! adult olfactory system model synonym: "DP1m adPN" EXACT [] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067022 name: antennal basiconic sensillum ab9 (Drosophila) namespace: fly_anatomy.ontology def: "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from other small bidendritic ab sensilla the identity of the ORNs that innervate it (69a and 67b)." [FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00004176 ! small sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00067023 name: adult olfactory receptor neuron Or67b (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or67b (FBgn0036019). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA3. Its dendrite transduces signals from antennal basiconic sensillum ab9." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or67b)" EXACT [FlyBrain_NDB:10414] synonym: "ORN ab9B" EXACT [PMID:18535862] synonym: "adult ORN Or67b" EXACT [] synonym: "odorant receptor neuron Or67b" EXACT [] synonym: "odorant receptor neuron VA3" RELATED [] xref: FlyBrain_NDB:10414 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067022 ! antennal basiconic sensillum ab9 (Drosophila) [Term] id: FBbt:00067024 name: antennal basiconic sensillum ab3 (Drosophila) namespace: fly_anatomy.ontology def: "A large olfactory basiconic sensillum of the antenna, innervated by 2 ORNs. It is distinguishable from ab2 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (22 and 85b; Cuoto et al., 2005; de Bruyne and Baker, 2008)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305, PMID:18535862] comment: Based on its size and the number of innervating ORNS, this is likely to correspond to LB-I (FBbt:00007355) or LB-II2 (FBbt:00007356) of Shanbhag et al., 1999, but it is not clear which. subset: olfactory_system_draft ! adult olfactory system model synonym: "Ab3" RELATED [] is_a: FBbt:00004175 ! large sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00067025 name: adult olfactory receptor neuron Or22 (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or22a (FBgn0026398) and Or22b (FBgn0026397). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM2. Its dendrite transduces signals from antennal basiconic sensillum ab3." [FlyBase:FBrf0159257, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or22a/b)" EXACT [FlyBrain_NDB:10395] synonym: "ORN ab3A" EXACT [FlyBase:FBrf0159257, FlyBase:FBrf0191741] synonym: "adult ORN Or22" EXACT [] synonym: "adult ORN Or22a" RELATED [FlyBase:FBrf0159257] synonym: "adult ORN Or22b" EXACT [FlyBase:FBrf0179238] synonym: "odorant receptor neuron DM2" RELATED [] synonym: "odorant receptor neuron Or22a" EXACT [] xref: FlyBrain_NDB:10395 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067024 ! antennal basiconic sensillum ab3 (Drosophila) [Term] id: FBbt:00067026 name: antennal basiconic sensillum ab7 (Drosophila) namespace: fly_anatomy.ontology def: "Small antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (49b and 98a; Cuoto et al., 2005; de Bruyne and Baker, 2008)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00004176 ! small sensillum basiconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00067027 name: adult olfactory receptor neuron Or67c (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or67c (FBgn0036078). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC4. Its dendrite transduces signals from antennal basiconic sensillum ab7." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or67c)" EXACT [FlyBrain_NDB:10415] synonym: "ORN ab7B" EXACT [FlyBase:FBrf0179238] synonym: "adult ORN Or67c" EXACT [] synonym: "odorant receptor neuron Or67c" EXACT [] synonym: "odorant receptor neuron VC4" RELATED [] xref: FlyBrain_NDB:10415 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067026 ! antennal basiconic sensillum ab7 (Drosophila) [Term] id: FBbt:00067028 name: adult antennal lobe projection neuron DL5 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the embryonic born ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL5. This neuron is born from the 16th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0183938, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "DL5 adPN" EXACT [] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067030 name: antennal trichoid sensillum at1 (Drosophila) namespace: fly_anatomy.ontology def: "Mono-innervated olfactory trichoid sensillum of antennal segment 3." [FlyBase:FBrf0187305, PMID:18535862] comment: May be identical to antennal sensillum trichodeum T1 (FBbt:00007348) of Shanbhag et al., 1999. subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007348 ! antennal sensillum trichodeum T1 (Drosophila) [Term] id: FBbt:00067031 name: adult olfactory receptor neuron Or67d (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses OR67d (FBgn0036080). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA1. Its dendrite transduces signals from antennal trichoid sensillum at1." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or67d)" EXACT [FlyBrain_NDB:10416] synonym: "ORN at1A" EXACT [PMID:18535862] synonym: "adult ORN Or67d" EXACT [] synonym: "odorant receptor neuron DA1" RELATED [] synonym: "odorant receptor neuron OR67d" EXACT [] xref: FlyBrain_NDB:10416 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067030 ! antennal trichoid sensillum at1 (Drosophila) [Term] id: FBbt:00067032 name: antennal trichoid sensillum at2 (Drosophila) namespace: fly_anatomy.ontology def: "Olfactory trichoid sensillum of antennal segment 3 that is innervated by two ORNs." [FlyBase:FBrf0187305, PMID:18535862] comment: May be identical to antennal sensillum trichodeum T2 (FBbt:00007348) of Shanbhag et al., 1999. subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007349 ! antennal sensillum trichodeum T2 (Drosophila) [Term] id: FBbt:00067033 name: adult olfactory receptor neuron Or23a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or23a (FBgn0026395). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA3. Its dendrite transduces signals from antennal trichoid sensillum at2." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or23a)" EXACT [FlyBrain_NDB:10396] synonym: "ORN at2A" EXACT [PMID:18535862] synonym: "adult ORN Or23a" EXACT [] synonym: "odorant receptor neuron DA3" RELATED [] synonym: "odorant receptor neuron Or23a" EXACT [] xref: FlyBrain_NDB:10396 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067032 ! antennal trichoid sensillum at2 (Drosophila) [Term] id: FBbt:00067034 name: adult olfactory receptor neuron Or69a (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00067037 def: "Bilateral olfactory receptor neuron (ORN) that expresses Or69a (FBgn0041622). It innervates antennal lobe glomerulus D in both antennal lobes: its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus D and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus D. Its dendrite transduces signals from antennal basiconic sensillum ab9." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or69aA/aB)" EXACT [FlyBrain_NDB:10417] synonym: "ORN ab9A" EXACT [PMID:18535862] synonym: "adult ORN Or69a" EXACT [] synonym: "odorant receptor neuron D" EXACT [] synonym: "odorant receptor neuron OR69a" RELATED [] xref: FlyBrain_NDB:10417 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067022 ! antennal basiconic sensillum ab9 (Drosophila) [Term] id: FBbt:00067035 name: maxillary palp basiconic sensillum pb2 (Drosophila) namespace: fly_anatomy.ontology def: "Basiconic olfactory sensillum of maxillary palp that is innervated by the dendrites of two ORNs. It is distinguishable from pb1 and pb3 by its odor response profile (Goldman et al., 2005) and the identity of the ORNs that innervate it (85e/33c and 46a; Cuoto et al., 2005; Goldman et al., 2005)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00004159 ! maxillary palp sensillum basiconicum (Drosophila) relationship: part_of FBbt:00004546 ! maxillary palpus (Drosophila) [Term] id: FBbt:00067036 name: adult olfactory receptor neuron Or33c/85e (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00067053 def: "Bilateral olfactory receptor neuron (ORN) that expresses Or33c (FBgn0026390) and Or85e (FBgn0026399) . Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC1. Its dendrite transduces signals from maxillary palp basiconic sensillum pb2." [FlyBase:FBrf0184216, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or33c/85e)" EXACT [FlyBrain_NDB:10398] synonym: "ORN pb2A" EXACT [FlyBase:FBrf0184216] synonym: "adult ORN Or33c/85e" EXACT [] synonym: "adult ORN Or85e" EXACT [] synonym: "odorant receptor neuron Or33c" EXACT [] synonym: "odorant receptor neuron Or85e" EXACT [] synonym: "odorant receptor neuron VC1" RELATED [] xref: FlyBrain_NDB:10398 is_a: FBbt:00007353 ! maxillary palp olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067035 ! maxillary palp basiconic sensillum pb2 (Drosophila) [Term] id: FBbt:00067038 name: antennal coeloconic sensillum ac1 (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00004177 ! sensillum coeloconicum of antennal segment 3 (Drosophila) [Term] id: FBbt:00067039 name: adult olfactory receptor neuron Or35a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or35a (FBgn0028946). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC3. Its dendrite transduces signals from antennal coeloconic sensillum ac1." [FlyBase:FBrf0187305, FlyBase:FBrf0187906] comment: According to de Yao et al., 2005, this ORN transduces signals from ac3, not ac1 as claimed by Couto et al., 2005. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or35a)" EXACT [FlyBrain_NDB:10399] synonym: "ORN ac3B" RELATED [FlyBase:FBrf0187906] synonym: "adult ORN Or35a" EXACT [] synonym: "odorant receptor neuron Or35a" EXACT [] synonym: "odorant receptor neuron VC3" RELATED [] xref: FlyBrain_NDB:10399 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067038 ! antennal coeloconic sensillum ac1 (Drosophila) [Term] id: FBbt:00067040 name: maxillary palp basiconic sensillum pb1 (Drosophila) namespace: fly_anatomy.ontology def: "Basiconic olfactory sensillum of maxillary palp that is innervated by the dendrites of two ORNs. It is distinguishable from pb2 and pb3 by its odor response profile (Goldman et al., 2005) and the identity of the ORNs that innervate it (42a and 71a; Cuoto et al., 2005; Goldman et al., 2005)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00004159 ! maxillary palp sensillum basiconicum (Drosophila) relationship: part_of FBbt:00004546 ! maxillary palpus (Drosophila) [Term] id: FBbt:00067041 name: adult olfactory receptor neuron Or71a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or71a (FBgn0036474). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VC2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VC2. Its dendrite transduces signals from maxillary palp basiconic sensillum pb1." [FlyBase:FBrf0184216, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or71a)" EXACT [FlyBrain_NDB:10419] synonym: "ORN pb1B" EXACT [FlyBase:FBrf0184216] synonym: "adult ORN Or71a" EXACT [] synonym: "odorant receptor neuron Or71a" EXACT [] synonym: "odorant receptor neuron VC2" RELATED [] xref: FlyBrain_NDB:10419 is_a: FBbt:00007353 ! maxillary palp olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067040 ! maxillary palp basiconic sensillum pb1 (Drosophila) [Term] id: FBbt:00067042 name: adult olfactory receptor neuron Or42a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or42a (FBgn0033041). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM7 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA1. Its dendrite transduces signals from maxillary palp basiconic sensillum pb1." [FlyBase:FBrf0184216, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or42a)" EXACT [FlyBrain_NDB:10400] synonym: "ORN pb1A" EXACT [FlyBase:FBrf0184216] synonym: "adult ORN Or42a" EXACT [] synonym: "odorant receptor neuron Or42a" EXACT [] synonym: "odorant receptor neuron VM7" RELATED [] xref: FlyBrain_NDB:10400 is_a: FBbt:00007353 ! maxillary palp olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067040 ! maxillary palp basiconic sensillum pb1 (Drosophila) [Term] id: FBbt:00067043 name: antennal basiconic sensillum ab5 (Drosophila) namespace: fly_anatomy.ontology def: "Thin antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (82a and 47a; Cuoto et al., 2005; de Bruyne and Baker, 2008)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305, PMID:18535862] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00007420 ! antennal basiconic sensillum TB-2 (Drosophila) [Term] id: FBbt:00067044 name: adult olfactory receptor neuron Or82a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or82a (FBgn0041621). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA6 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA6. Its dendrite transduces signals from antennal basiconic sensillum ab5." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or82a)" EXACT [FlyBrain_NDB:10421] synonym: "ORN ab5A" EXACT [FlyBase:FBrf0179238] synonym: "adult ORN Or82a" EXACT [] synonym: "odorant receptor neuron Or82a" EXACT [] synonym: "odorant receptor neuron VA6" RELATED [] xref: FlyBrain_NDB:10421 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067043 ! antennal basiconic sensillum ab5 (Drosophila) [Term] id: FBbt:00067046 name: adult olfactory receptor neuron Or42b (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or42b (FBgn0033043). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM1 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM1. Its dendrite transduces signals from antennal basiconic sensillum ab1." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or42b)" EXACT [FlyBrain_NDB:10401] synonym: "ORN ab1A" EXACT [FlyBase:FBrf0208960] synonym: "adult ORN Or42b" EXACT [] synonym: "odorant receptor neuron DM1" RELATED [] synonym: "odorant receptor neuron Or42b" EXACT [] xref: FlyBrain_NDB:10401 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067012 ! antennal basiconic sensillum ab1 (Drosophila) [Term] id: FBbt:00067047 name: adult olfactory receptor neuron Or83c (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or83c (FBgn0037399). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DC3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DC3. Its dendrite transduces signals from antennal trichoid sensillum at2." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or83c)" EXACT [FlyBrain_NDB:10422] synonym: "ORN at2B" EXACT [PMID:18535862] synonym: "adult ORN Or83c" EXACT [] synonym: "odorant receptor neuron DC3" RELATED [] synonym: "odorant receptor neuron Or83c" EXACT [] xref: FlyBrain_NDB:10422 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067032 ! antennal trichoid sensillum at2 (Drosophila) [Term] id: FBbt:00067048 name: adult olfactory receptor neuron Or43a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or43a (FBgn0026389). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA4l and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA4l. Its dendrite transduces signals from antennal trichoid sensillum at3." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or43a)" EXACT [FlyBrain_NDB:10402] synonym: "ORN at3C" EXACT [PMID:18535862] synonym: "adult ORN Or43a" EXACT [] synonym: "odorant receptor neuron DA4l" RELATED [] synonym: "odorant receptor neuron Or43a" RELATED [] xref: FlyBrain_NDB:10402 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067000 ! antennal trichoid sensillum at3 (Drosophila) [Term] id: FBbt:00067049 name: adult olfactory receptor neuron Or85a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or85a (FBgn0037576). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM5 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM5. Its dendrite transduces signals from antennal basiconic sensillum ab2." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or85a)" EXACT [FlyBrain_NDB:10423] synonym: "ORN ab2B" EXACT [FlyBase:FBrf0208960] synonym: "adult ORN Or85a" EXACT [] synonym: "odorant receptor neuron DM5" RELATED [] synonym: "odorant receptor neuron Or85a" EXACT [] xref: FlyBrain_NDB:10423 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067002 ! antennal basiconic sensillum ab2 (Drosophila) [Term] id: FBbt:00067050 name: adult olfactory receptor neuron Or43b (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or43b (FBgn0026393). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM2. Its dendrite transduces signals from antennal basiconic sensillum ab8." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or43b)" EXACT [FlyBrain_NDB:10403] synonym: "ORN ab8A" EXACT [FlyBase:FBrf0179238] synonym: "adult ORN Or43b" EXACT [] synonym: "odorant receptor neuron Or43b" EXACT [] synonym: "odorant receptor neuron VM2" RELATED [] xref: FlyBrain_NDB:10403 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067008 ! antennal basiconic sensillum ab8 (Drosophila) [Term] id: FBbt:00067051 name: adult olfactory receptor neuron Or85d (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or85d (FBgn0037594). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA4. Its dendrite transduces signals from maxillary palp basiconic sensillum pb3." [FlyBase:FBrf0184216, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or85d)" EXACT [FlyBrain_NDB:10426] synonym: "ORN pb3AB" EXACT [FlyBase:FBrf0184216] synonym: "adult ORN Or85d" EXACT [] synonym: "odorant receptor neuron Or85d" EXACT [] synonym: "odorant receptor neuron VA4" RELATED [] xref: FlyBrain_NDB:10426 is_a: FBbt:00007353 ! maxillary palp olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067006 ! maxillary palp basiconic sensillum pb3 (Drosophila) [Term] id: FBbt:00067052 name: adult olfactory receptor neuron Or46a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or46a (FBgn0026388). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA7l and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA7l. Its dendrite transduces signals from maxillary palp basiconic sensillum pb2." [FlyBase:FBrf0184216, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or46aA)" EXACT [FlyBrain_NDB:10404] synonym: "ORN pb2B" EXACT [FlyBase:FBrf0184216] synonym: "adult ORN Or46a" EXACT [] synonym: "odorant receptor neuron Or46a" EXACT [] synonym: "odorant receptor neuron VA7l" RELATED [] xref: FlyBrain_NDB:10404 is_a: FBbt:00007353 ! maxillary palp olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067035 ! maxillary palp basiconic sensillum pb2 (Drosophila) [Term] id: FBbt:00067054 name: adult olfactory receptor neuron Or47a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or47a (FBgn0026386). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DM3 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DM3. Its dendrite transduces signals from basiconic sensillum ab5." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or47a)" EXACT [FlyBrain_NDB:10405] synonym: "ORN ab5B" EXACT [FlyBase:FBrf0179238] synonym: "adult ORN Or47a" EXACT [] synonym: "odorant receptor neuron DM3" RELATED [] synonym: "odorant receptor neuron Or47a" EXACT [] xref: FlyBrain_NDB:10405 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067043 ! antennal basiconic sensillum ab5 (Drosophila) [Term] id: FBbt:00067055 name: adult olfactory receptor neuron Or85f (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or85f (FBgn0037685). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL4. Its dendrite transduces signals from basiconic sensillum ab10." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN ab10A" EXACT [FlyBase:FBrf0179238, PMID:18535862] synonym: "adult ORN Or85f" EXACT [] synonym: "odorant receptor neuron DL4" BROAD [FlyBase:FBrf0187305] synonym: "odorant receptor neuron Or85f" EXACT [] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067019 ! antennal basiconic sensillum ab10 (Drosophila) [Term] id: FBbt:00067056 name: adult olfactory receptor neuron Or47b (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or47b (FBgn0026385). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA1v and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA1v. Its dendrite transduces signals from antennal trichoid sensillum at4." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or47b)" EXACT [FlyBrain_NDB:10406] synonym: "ORN at4A" EXACT [PMID:18535862] synonym: "adult ORN Or47b" EXACT [] synonym: "odorant receptor neuron Or47b" EXACT [] synonym: "odorant receptor neuron VA1v" BROAD [] xref: FlyBrain_NDB:10406 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067010 ! antennal trichoid sensillum at4 (Drosophila) [Term] id: FBbt:00067057 name: adult olfactory receptor neuron Or88a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or88a (FBgn0038203). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA1d and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA1d. Its dendrite transduces signals from antennal trichoid sensillum at4." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or88a)" EXACT [FlyBrain_NDB:10427] synonym: "ORN at4C" EXACT [PMID:18535862] synonym: "adult ORN Or88a" EXACT [] synonym: "odorant receptor neuron Or88a" EXACT [] synonym: "odorant receptor neuron VA1d" BROAD [] xref: FlyBrain_NDB:10427 is_a: FBbt:00007292 ! sensory neuron of trichoid sensillum (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067010 ! antennal trichoid sensillum at4 (Drosophila) [Term] id: FBbt:00067058 name: adult olfactory receptor neuron Or49a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or49a (FBgn0033727). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DL4 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DL4. Its dendrite transduces signals from antennal basiconic sensillum ab10." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "adult ORN Or49a" EXACT [] synonym: "odorant receptor neuron DL4" BROAD [] synonym: "odorant receptor neuron Or49a" EXACT [] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067019 ! antennal basiconic sensillum ab10 (Drosophila) [Term] id: FBbt:00067059 name: adult olfactory receptor neuron Or92a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or92a (FBgn0038798). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA2. Its dendrite transduces signals from antennal basiconic sensillum ab1." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or92a)" EXACT [FlyBrain_NDB:10428] synonym: "ORN ab1B" EXACT [FlyBase:FBrf0208960] synonym: "adult ORN Or92a" EXACT [] synonym: "odorant receptor neuron Or92a" EXACT [] synonym: "odorant receptor neuron VA2" RELATED [] xref: FlyBrain_NDB:10428 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067012 ! antennal basiconic sensillum ab1 (Drosophila) [Term] id: FBbt:00067060 name: antennal basiconic sensillum ab6 (Drosophila) namespace: fly_anatomy.ontology def: "Thin antennal basiconic sensillum innervated by the dendrites of two ORNs. It is distinguishable from ab5 - ab10 by its odor response profile (De Bruyne et al., 2001) and the identity of the ORNs that innervate it (49b; Cuoto et al., 2005; de Bruyne and Baker, 2008)." [FlyBase:FBrf0108493, FlyBase:FBrf0187305, PMID:18535862] is_a: FBbt:00007420 ! antennal basiconic sensillum TB-2 (Drosophila) [Term] id: FBbt:00067061 name: adult olfactory receptor neuron Or49b (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or49b (FBgn0028963). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VA5 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VA5. Its dendrite transduces signals from antennal basiconic sensillum ab6." [FlyBase:FBrf0179238, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or49b)" EXACT [FlyBrain_NDB:10408] synonym: "ORN ab6B" EXACT [FlyBase:FBrf0179238] synonym: "adult ORN Or49b" EXACT [] synonym: "odorant receptor neuron Or49b" EXACT [] synonym: "odorant receptor neuron VA5" RELATED [] xref: FlyBrain_NDB:10408 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067060 ! antennal basiconic sensillum ab6 (Drosophila) [Term] id: FBbt:00067062 name: adult olfactory receptor neuron Or98a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or98a (FBgn0039551). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus VM5v and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus VM5v. Its dendrite transduces signals from antennal basiconic sensillum ab7." [FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or98a)" EXACT [FlyBrain_NDB:10429] synonym: "ORN ab7A" EXACT [PMID:18535862] synonym: "adult ORN Or98a" EXACT [] synonym: "odorant receptor neuron Or98a" EXACT [] synonym: "odorant receptor neuron VM5v" RELATED [] xref: FlyBrain_NDB:10429 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067026 ! antennal basiconic sensillum ab7 (Drosophila) [Term] id: FBbt:00067063 name: adult olfactory receptor neuron Or56a (Drosophila) namespace: fly_anatomy.ontology def: "Bilateral olfactory receptor neuron (ORN) that expresses Or56a (FBgn0034473). Its axon branches, with one branch innervating the ipsilateral antennal lobe glomerulus DA2 and the other fasciculating with the antennal commissure and innervating the contralateral antennal lobe glomerulus DA2. Its dendrite transduces signals from antennal basiconic sensillum ab4." [FlyBase:FBrf0187305] comment: Antennal basiconic sensillum ab4 is bidendritic. According to Hallem et al., 2004 (FBrf0179238), adult ORN Or7a corresponds to ab4A. We can therefore deduce that adult ORN Or56a corresponds to ORN ab4B. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Or56a)" EXACT [FlyBrain_NDB:10409] synonym: "ORN ab4B" EXACT [PMID:18535862] synonym: "adult ORN Or56a" EXACT [] synonym: "olfactory receptor neuron DA2" RELATED [] synonym: "olfactory receptor neuron Or56a" RELATED [] xref: FlyBrain_NDB:10409 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) relationship: part_of FBbt:00067004 ! antennal basiconic sensillum ab4 (Drosophila) [Term] id: FBbt:00067064 name: adult olfactory receptor neuron Gr21a (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00100336 def: "Ipsilateral odorant receptor neuron that expresses Gr21a (FBgn0041250). It innervates antennal lobe glomerulus V. Unlike many other antennal olfactory receptor neurons, it does not send an axon branch through the antennal commissure to innervate the equivalent contralateral glomerulus. Suh et al., (2004), identify this neuron as being sensitive to CO2 levels." [FlyBase:FBrf0051437, FlyBase:FBrf0179739, FlyBase:FBrf0187305] subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (Gr21a)" EXACT [FlyBrain_NDB:10390] synonym: "ORN ab1C" EXACT [FlyBase:FBrf0208960] synonym: "adult ORN Gr21a" EXACT [] synonym: "olfactory receptor neuron Gr21a" EXACT [] synonym: "olfactory receptor neuron V" RELATED [] xref: FlyBrain_NDB:10390 is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00007352 ! antennal olfactory receptor neuron (Drosophila) is_a: FBbt:00100045 ! carbon dioxide sensitive neuron (Drosophila) relationship: part_of FBbt:00067012 ! antennal basiconic sensillum ab1 (Drosophila) [Term] id: FBbt:00067123 name: adult antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00003990 def: "Interneuron whose dendrite innervates the antennal lobe and whose axon innervates some higher brain centre - generally the mushroom body calyx and/or the lateral horn." [FlyBase:FBrf0051437] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "PN" RELATED [] synonym: "relay interneuron" RELATED [FlyBase:FBrf0051437] is_a: FBbt:00007422 ! antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067345 name: antennal lobe neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast that is the progenitor of interneurons that innervate the antennal lobe." [FlyBase:FBrf0141667, FlyBase:FBrf0205814] subset: olfactory_system_draft ! adult olfactory system model is_a: CL:0000031 ! neuroblast [Term] id: FBbt:00067346 name: antero-dorsal AL neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Antero-dorsally located antennal lobe neuroblast." [FlyBase:FBrf0141667, FlyBase:FBrf0205814] subset: olfactory_system_draft ! adult olfactory system model synonym: "antero-dorsal antennal lobe neuroblast" EXACT [] is_a: FBbt:00067345 ! antennal lobe neuroblast (Drosophila) [Term] id: FBbt:00067347 name: lateral AL neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Laterally located antennal lobe neuroblast." [FlyBase:FBrf0141667, FlyBase:FBrf0205814] subset: olfactory_system_draft ! adult olfactory system model synonym: "lateral antennal lobe neuroblast" EXACT [] is_a: FBbt:00067345 ! antennal lobe neuroblast (Drosophila) [Term] id: FBbt:00067348 name: ventral AL neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Ventrally located antennal lobe neuroblast." [FlyBase:FBrf0141667, FlyBase:FBrf0205814] subset: olfactory_system_draft ! adult olfactory system model synonym: "ventral antennal lobe neuroblast" EXACT [] is_a: FBbt:00067345 ! antennal lobe neuroblast (Drosophila) [Term] id: FBbt:00067349 name: antennal lobe projection neuron adPN (Drosophila) namespace: fly_anatomy.ontology def: "Any antennal lobe projection neuron (FBbt:00007422) that develops from some antero-dorsal AL neuroblast (FBbt:00067346)." [FBC:auto_generated_definition, FlyBase:FBrf0141667, FlyBase:FBrf0146917, FlyBase:FBrf0205814, FlyBase:FBrf0211729] subset: olfactory_system_draft ! adult olfactory system model synonym: "ad PN" EXACT [] synonym: "adPN" EXACT [] is_a: FBbt:00007422 ! antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) [Term] id: FBbt:00067350 name: antennal lobe projection neuron iPN (Drosophila) namespace: fly_anatomy.ontology def: "Adult antennal lobe projection neuron that fasciculates with the inner antenno-cerebral tract. There are about 100 of these per tract. Most (all?) of these neurons arborize extensively in the mushroom body calyx, whilst the accessory calyx is free from termini. Most are cholinergic (Yasuyama et al., 2003), but some are GABAergic (Wilson and Laurent, 2005; Jefferis et al, 2007)." [FlyBase:FBrf0167816, FlyBase:FBrf0191055, FlyBase:FBrf0203179, FlyBase:FBrf0205263] subset: olfactory_system_draft ! adult olfactory system model synonym: "iACT projection neuron" EXACT [FlyBrain_NDB:10448] synonym: "iPN" EXACT [] synonym: "inner antennocerebral tract projection neuron" EXACT [] xref: FlyBrain_NDB:10448 is_a: FBbt:00067123 ! adult antennal lobe projection neuron (Drosophila) [Term] id: FBbt:00067351 name: antennal lobe projection neuron vPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron that derives from the ventral antennal lobe neuroblast." [FlyBase:FBrf0203179, FlyBase:FBrf0205814] subset: olfactory_system_draft ! adult olfactory system model synonym: "vPN" EXACT [] is_a: FBbt:00007422 ! antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) disjoint_from: FBbt:00067349 ! antennal lobe projection neuron adPN (Drosophila) [Term] id: FBbt:00067352 name: adult antennal lobe projection neuron VA2 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA2. This neuron is born from the 14th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0183938, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "VA2 adPN" EXACT [] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067353 name: adult antennal lobe projection neuron DL1 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL1. Neurons of this class are derived from the first larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0195086, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "DL1 adPN" EXACT [] is_a: FBbt:00007456 ! persistent antennal lobe projection neuron (Drosophila) is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067354 name: adult antennal lobe projection neuron DC2 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DC2. This neuron is derived from the third larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "DC2 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067355 name: adult antennal lobe projection neuron D adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus D. This neuron is derived from the third larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: See 10.1371/journal.pbio.1000461.g002 for image. subset: olfactory_system_draft ! adult olfactory system model synonym: "D adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067356 name: adult antennal lobe projection neuron VA3 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA3. Neurons of this class derive from the fifth larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0195086, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "VA3 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067357 name: adult antennal lobe projection neuron VA1d adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA1d. Neurons of this class are derived from the seventh larval division of the antero-dorsal AL neuroblast and their axons innervate the anterior/ventral region of the lateral horn (Marin et al., 2002)." [FlyBase:FBrf0141667, FlyBase:FBrf0146917, FlyBase:FBrf0195086, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "VA1d adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067358 name: adult antennal lobe projection neuron VM7 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM7. Neurons of this class are derived from the 10th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0195086] subset: olfactory_system_draft ! adult olfactory system model synonym: "VM7 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067359 name: adult antennal lobe projection neuron VM2 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM2. Neurons of this class are derived from the 11th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0146917, FlyBase:FBrf0203179, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "VM2 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067360 name: adult antennal lobe projection neuron DM6 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM6. Neurons of this class are derived from the 12th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0141667, FlyBase:FBrf0195086, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "DM6 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067361 name: adult antennal lobe projection neuron VA1lm adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA1 medial and lateral compartments. Neurons of this class are derived from the 13th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010). Their axons innervate the ventral half of the lateral horn (Marin et al., 2002)." [FlyBase:FBrf0141667, FlyBase:FBrf0146917, FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "VA1lm adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067362 name: antennal lobe projection neuron lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron that derives from the lateral antennal lobe neuroblast." [FlyBase:FBrf0141667] subset: olfactory_system_draft ! adult olfactory system model synonym: "lPN" EXACT [] is_a: FBbt:00007422 ! antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) disjoint_from: FBbt:00067349 ! antennal lobe projection neuron adPN (Drosophila) disjoint_from: FBbt:00067351 ! antennal lobe projection neuron vPN (Drosophila) [Term] id: FBbt:00067363 name: adult antennal lobe projection neuron DA1 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DA1. The axons of these neurons innervate a small area at the anterior edge of the lateral horn." [FlyBase:FBrf0146917] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "DA1 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067364 name: adult antennal lobe projection neuron DL3 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL3." [FlyBase:FBrf0146917] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "DL3 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067365 name: adult antennal lobe projection neuron VA7m lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA7m." [FlyBase:FBrf0146917, FlyBase:FBrf0203179] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (VA7m)" EXACT [FlyBrain_NDB:10431] synonym: "VA7m lPN" EXACT [] xref: FlyBrain_NDB:10431 is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067366 name: adult antennal lobe projection neuron VA5 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA5." [FlyBase:FBrf0146917, FlyBase:FBrf0203179] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "VA5 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067367 name: adult antennal lobe projection neuron DM5 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM5." [FlyBase:FBrf0195086, FlyBase:FBrf0203179] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "DM5 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067368 name: adult antennal lobe projection neuron DM2 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM2." [FlyBase:FBrf0146917] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "DM2 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067369 name: adult antennal lobe projection neuron DM1 lPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM1." [FlyBase:FBrf0146916] subset: hidden_assertion ! Stanza contains hidden assertion. subset: olfactory_system_draft ! adult olfactory system model synonym: "DM1 lPN" EXACT [] is_a: FBbt:00007439 ! adult antennal lobe projection neuron lPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) is_a: FBbt:00067350 ! antennal lobe projection neuron iPN (Drosophila) is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) relationship: develops_from FBbt:00067347 ! lateral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067371 name: adult antennal lobe projection neuron VA1lm vPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ventral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VA1lm." [FlyBase:FBrf0146916, FlyBase:FBrf0146917] subset: olfactory_system_draft ! adult olfactory system model synonym: "VA1lm vPN" EXACT [] is_a: FBbt:00007445 ! adult uniglomerular antennal lobe projection neuron vPN (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067372 name: adult antennal lobe projection neuron DA1 vPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the lateral neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DA1." [FlyBase:FBrf0146916, FlyBase:FBrf0146917] subset: olfactory_system_draft ! adult olfactory system model synonym: "DA1 vPN" EXACT [] is_a: FBbt:00007445 ! adult uniglomerular antennal lobe projection neuron vPN (Drosophila) relationship: develops_from FBbt:00067348 ! ventral AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00067500 name: adult antennal lobe glomerulus (Drosophila) namespace: fly_anatomy.ontology def: "Any glomerulus (FBbt:00005386) that is part of some adult antennal lobe (FBbt:00007401)." [FBC:auto_generated_definition] subset: olfactory_system_draft ! adult olfactory system model is_a: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00100000 name: Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Scolopidial (mechanosensory) neuron of Johnston's organ. Its axon innervates the antennal mechanosensory and motor center." [FlyBase:FBrf0083230, FlyBase:FBrf0194812] comment: Believed to be cholinergic on the basis of expression of a (ChAT)-lacZ fusion gene (Kitamoto et al., 1995). synonym: "JON" EXACT [FlyBase:FBrf0194812] synonym: "Johnston's organ neuron" EXACT [FlyBase:FBrf0194812] relationship: part_of FBbt:00004178 ! Johnston organ (Drosophila) [Term] id: FBbt:00100001 name: Johnston organ bundle of antennal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Bundle formed from the fasciculated axons of the Johnston's organ neurons (JONs) within the antennal nerve (AN). The JONs form two bundles (dorsolateral and medioventral) within the antennal nerve by the point it reaches the base of antennal segment 1 (a1/scape). Shortly before entering the brain, these two bundles combine and spread over a large area of the AN cross-section. Upon entering the brain, the JONs predominantly occupy the ventral part of the AN. At the ventrolateral side of the antennal lobe, the bundle bifurcates. One side of the bifurcation gives rise to the main trunk of the antennal mechanosensory and motor center (AMMC). The other side defasciculates and innervates zone A of the AMMC." [FlyBase:FBrf0187921, FlyBase:FBrf0194812] synonym: "JON nerve" RELATED [FlyBase:FBrf0187921, FlyBase:FBrf0194812] synonym: "Johnston organ nerve" RELATED [] synonym: "Johnston organ neuron nerve" RELATED [] synonym: "Johnston's organ nerve" RELATED [] synonym: "Johnston's organ neuron nerve" RELATED [] is_a: UBERON:0001021 ! nerve relationship: part_of FBbt:00003980 ! adult antennal nerve (Drosophila) [Term] id: FBbt:00100002 name: sound activated Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron (JON) activated by near-field sound ranging from 19 Hz to 952 Hz, maximally at 90dB (Kamikouchi et al., 2009; Yorozu et al., 2009). Cells preferentially activated by low-frequency vibration are loosely distributed as a ring in the middle layer of JON cell bodies. Higher frequencies preferentially activate JON neurons with cell bodies likely located mainly in the inner layer, directly surrounding the antennal nerve (Kamikouchi et al., 2006). These neurons are also transiently activated by the onset and offset of arista displacement." [FlyBase:FBrf0194812, FlyBase:FBrf0207518, FlyBase:FBrf0207559] comment: Response to sound and arista displacement determined electrophysiologically and using the calcium sensor GCaMP (Yorozu et al., 2009). synonym: "sound activated Johnston's organ neuron" EXACT [] synonym: "vibration sensitive JON" EXACT [FlyBase:FBrf0207559] is_a: FBbt:00100011 ! Johnston organ neuron phasically activated by arista deflection (Drosophila) [Term] id: FBbt:00100003 name: gravity sensitive Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron (JON) that is tonically activated by aristal deflection and is necessary for normal gravitaxis behaviour. These neurons form a broad 'ring' in the medial and outer layers of the JON array (Kamikouchi et al., 2009)." [FlyBase:FBrf0194812, FlyBase:FBrf0207518] comment: This neuron remains active as long as aristal deflection is maintained, as determined electrophysiologically and with intracellular calcium sensors (Kamikouchi et al., 2009). Evidence for role in gravitaxis behaviour comes from silencing of subsets of JO neurons using targeted expression of tetanus toxin (Kamikouchi et al., 2009). This class of JON may overlap with the wind sensitive JON. synonym: "deflection sensitive neurons" RELATED [FlyBase:FBrf0207518] synonym: "gravity sensing neurons" RELATED [FlyBase:FBrf0207518] synonym: "gravity sensitive Johnston's organ neuron" EXACT [] is_a: FBbt:00100012 ! Johnston organ neuron tonically activated by arista deflection (Drosophila) [Term] id: FBbt:00100004 name: wind sensitive Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron (JON) tonically activated by arista deflection and required for 'wind-induced suppression of locomotion' behaviour (WISL; Yorozu et al., 2009). The cell bodies of these neurons form a broad ring in the medial and outer layers of the JON array (Kamikouchi et al., 2006)." [FlyBase:FBrf0194812, FlyBase:FBrf0207559] synonym: "deflection sensitive neuron" RELATED [FlyBase:FBrf0207518] synonym: "wind sensitive Johnston's organ neuron" EXACT [] is_a: FBbt:00100012 ! Johnston organ neuron tonically activated by arista deflection (Drosophila) [Term] id: FBbt:00100005 name: main trunk of antennal mechanosensory and motor center (Drosophila) namespace: fly_anatomy.ontology def: "The main trunk (MT) of antennal mechanosensory and motor center (AMMC) is one of two bundles formed by the initial bifurcation of the Johnston's organ nerve projection, ventro-laterally to the antennal lobe. The second, more lateral bundle forms the anterior portion of AMMC zone A. The MT progresses posteriorly and exhibits a second bifurcation that gives rise to the bundle forming AMMC zone B. A final posterior MT bifurcation gives rise to the AMMC lateral core and EA bundle. The MT is devoid of presynaptic sites." [FlyBase:FBrf0194812] comment: That the MT lacks presynaptic sites is based on negative anti-syntaxin immunolabelling and synaptobrevin::GFP localization. It is this lack of presynaptic sites which is used to distinguish the MT from the branches of the anterior portion of Zone A and zone B which are syntaxin- and synaptobrevin-positive (Kamikouchi et al., 2006). synonym: "MT" RELATED [FlyBase:FBrf0194812] synonym: "main trunk" RELATED [FlyBase:FBrf0194812] synonym: "main trunk of AMMC" EXACT [] synonym: "main trunk of JON bundle" RELATED [] is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100006 name: EA bundle of antennal mechanosensory and motor center (Drosophila) namespace: fly_anatomy.ontology def: "Bundle, devoid of presynaptic sites, formed from one branch of the final, most posterior bifurcation of the antennal mechanosensory and motor center (AMMC) main trunk (MT). The other side of the bifurcation gives rise to the lateral core of the AMMC (LC). It is directly connected to zone E of the AMMC and consists of the projections of zone E Johnston's organ neurons." [FlyBase:FBrf0194812] comment: DISAMBIGUATION: Kamikouchi et al., 2006, refer to this as part of zone E, however we use AMMC zone E to refer only to the synapse rich region anterior to the EA. Evidence that EA bundle of AMMC lacks presynaptic sites is based on negative anti-syntaxin immunolabelling and synaptobrevin::GFP localization (Kamikouchi et al., 2006). synonym: "EA" EXACT [] synonym: "EA bundle of AMMC" EXACT [] synonym: "anterior region of bundle e" EXACT [] synonym: "anterior region of zone E" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100007 name: lateral core of antennal mechanosensory and motor center (Drosophila) namespace: fly_anatomy.ontology def: "Neuron projection bundle containing the axons of Johnston's organ neurons (JONs) that arises from the final, most posterior bifurcation of the main trunk of the antennal mechanosensory and motor center (AMMC). (The other bundle arising from this bifurcation is the EA region of the AMMC). The lateral core is devoid of presynaptic sites. It terminates in a bifurcation that gives rise to the synapse rich AMMC zones C and D." [FlyBase:FBrf0194812] comment: That the lateral core of AMMC lacks presynaptic sites is based on negative anti-syntaxin immunolabelling and synaptobrevin::GFP localization (Kamikouchi et al., 2006). synonym: "LC" EXACT [] synonym: "lateral core of AMMC" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100008 name: zone A Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron that innervates zone A of the antennal mechanosensory and motor center (AMMC). The cell bodies of these neurons are located mainly in the inner layer of Johnston's organ, directly surrounding the antennal nerve." [FlyBase:FBrf0194812] comment: Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006). synonym: "zone A JON" EXACT [FlyBase:FBrf0194812] synonym: "zone A Johnston's organ neuron" EXACT [FlyBase:FBrf0194812] is_a: FBbt:00100000 ! Johnston organ neuron (Drosophila) [Term] id: FBbt:00100009 name: zone B Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron that innervates zone B of the antennal mechanosensory and motor center (AMMC). The cell bodies of zone B Johnston organ neurons are distributed as a ring in the middle layer of cells within the Johnston's organ (Kamikouchi et al., 2006)." [FlyBase:FBrf0194812] comment: Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006). synonym: "zone B JON" EXACT [FlyBase:FBrf0194812] synonym: "zone B Johnston's organ neuron" EXACT [FlyBase:FBrf0194812] is_a: FBbt:00100000 ! Johnston organ neuron (Drosophila) [Term] id: FBbt:00100010 name: zone C Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron that innervates zone C of the antennal mechanosensory and motor center (AMMC). The cell bodies of these neurons are co-mingled with those of zone E Johnston organ neurons, forming a broad ring mainly in the medial and outer layers of the Johnston's organ." [FlyBase:FBrf0194812] comment: Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006). synonym: "zone C JON" EXACT [FlyBase:FBrf0194812] synonym: "zone C Johnston's organ neuron" EXACT [FlyBase:FBrf0194812] is_a: FBbt:00100000 ! Johnston organ neuron (Drosophila) [Term] id: FBbt:00100011 name: Johnston organ neuron phasically activated by arista deflection (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron whose response is activated by small, bi-directional displacements of the antenna." [FlyBase:FBrf0194812, FlyBase:FBrf0207518, FlyBase:FBrf0207559] comment: May or may not be the same as 'sound activated Johnston's organ neuron' (FBbt:00100002). synonym: "Johnston's organ neuron phasically activated by arista deflection" EXACT [] is_a: FBbt:00100000 ! Johnston organ neuron (Drosophila) [Term] id: FBbt:00100012 name: Johnston organ neuron tonically activated by arista deflection (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron whose response is maintained so long as unidirectional aristal deflection is sustained." [FlyBase:FBrf0194812, FlyBase:FBrf0207559] synonym: "Johnston's organ neuron tonically activated by arista deflection" EXACT [] is_a: FBbt:00100000 ! Johnston organ neuron (Drosophila) [Term] id: FBbt:00100013 name: Johnston organ neuron activated by tonic posterior arista deflection (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron tonically activated by posterior arista deflection and required for wind-induced suppression of locomotion behaviour (WISL; Yorozu et al., 2009). These neurons project to zone E of the antennal mechanosensory and motor center." [FlyBase:FBrf0207559] comment: Calcium sensor (GCaMP) studies show strong activity of AMMC zone E when antenna is displaced either by wind application to the front of the head (or at 45 degrees to the front), or by mechanical manipulation. No activation of zone C or other zones is observed (Yorozu et al., 2009). synonym: "Johnston's organ neuron activated by tonic posterior arista deflection" EXACT [] is_a: FBbt:00100004 ! wind sensitive Johnston organ neuron (Drosophila) [Term] id: FBbt:00100014 name: Johnston organ neuron activated by tonic anterior arista deflection (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron tonically activated by anterior arista deflection and required for wind-induced suppression of locomotion behaviour (WISL; Yorozu et al., 2009). These neurons project to zone C of the antennal mechanosensory and motor center." [FlyBase:FBrf0207559] comment: Calcium sensor (GCaMP) studies show strong activity of AMMC zone C when antenna is displaced either by wind application to the rear of the head or by mechanical manipulation. No activation of zone E or other zones is observed (Yorozu et al., 2009). synonym: "Johnston's organ neuron activated by tonic anterior arista deflection" EXACT [] is_a: FBbt:00100004 ! wind sensitive Johnston organ neuron (Drosophila) [Term] id: FBbt:00100015 name: antennal mechanosensory and motor center zone A (Drosophila) namespace: fly_anatomy.ontology def: "Antennal mechanosensory and motor center zone A is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) formed from bifurcation of the Johnston's organ bundle. (The other structure arising from this bifurcation is the main trunk of the AMMC (MT)). Zone A is rich in presynaptic sites of Johnston's organ neurons. It is phasically activated by pulse song (between 19-952Hz, 90dB), with the strongest activation by higher-frequency vibrations (Kamikouchi et al., 2009). The cell bodies of zone A Johnston organ neurons are located mainly in the inner layer of Johnston's organ, directly surrounding the antennal nerve (Kamikouchi et al., 2006)." [FlyBase:FBrf0194812, FlyBase:FBrf0207518] comment: Presence of presynaptic sites of Johnston's organ neurons determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Sound activation of zone A was determined by GCaMP-based studies (Kamikouchi et al., 2009). synonym: "AMMC zone A" EXACT [FlyBase:FBrf0194812] synonym: "antennal mechanosensory and motor center zone A" EXACT [] synonym: "zone A" RELATED [FlyBase:FBrf0194812] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100016 name: antennal mechanosensory and motor center zone B (Drosophila) namespace: fly_anatomy.ontology def: "Antennal mechanosensory and motor center Zone B is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) formed from the first bifurcation of the AMMC main trunk. It is rich in presynaptic sites of Johnston's organ neurons (JONs). It is phasically activated by pulse song (between 19-952Hz, 90dB), with stronger activation by the low-frequency vibrations (Kamikouchi et al., 2009)." [FlyBase:FBrf0194812, FlyBase:FBrf0207518] comment: Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Sound activation of zones was determined by GCaMP-based studies (Kamikouchi et al., 2009). synonym: "AMMC zone B" EXACT [FlyBase:FBrf0194812] synonym: "antennal mechanosensory and motor center zone B" EXACT [] synonym: "zone B" RELATED [FlyBase:FBrf0194812] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100017 name: antennal mechanosensory and motor center zone C (Drosophila) namespace: fly_anatomy.ontology def: "Antennal mechanosensory and motor center zone C is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) that arises from the most lateral half of the bifurcation that terminates the lateral core (lc) bundle. (The other half of the bifurcation forms zone D). It is rich in the presynapses of Johnston's organ neurons (JONs) (Kamikouchi et al., 2006). Zone C JONs respond to anterior directed aristal deflection (Yorozu et al., 2009), and are also involved in gravitaxis (Kamikouchi et al., 2009)." [FlyBase:FBrf0194812, FlyBase:FBrf0207518, FlyBase:FBrf0207559] comment: Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Activation of zone C Johnston organ neurons through aristal deflection determined by GCaMP studies (Yorozu et al., 2009, Kamikouchi et al., 2009). synonym: "AMMC zone C" EXACT [FlyBase:FBrf0194812] synonym: "antennal mechanosensory and motor center zone C" EXACT [] synonym: "zone C" RELATED [FlyBase:FBrf0194812] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100018 name: antennal mechanosensory and motor center zone D (Drosophila) namespace: fly_anatomy.ontology def: "Antennal mechanosensory and motor center zone D is a synapse rich sub-region of the antennal mechanosensory and motor center (AMMC) that arises from the bifurcation that terminates the lateral core bundle. (The other half of the bifurcation forms zone C). It is rich in the presynapses of Johnston's organ neurons (JONs) (Kamikouchi et al., 2006)." [FlyBase:FBrf0194812] comment: Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). synonym: "AMMC zone D" EXACT [FlyBase:FBrf0194812] synonym: "antennal mechanosensory and motor center zone D" EXACT [] synonym: "zone D" RELATED [FlyBase:FBrf0194812] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100019 name: antennal mechanosensory and motor center zone E (Drosophila) namespace: fly_anatomy.ontology def: "Antennal mechanosensory and motor center zone E is a synapse-rich sub-region of the antennal mechanosensory and motor center (AMMC) that is continuous with the EA bundle. It is rich in presynaptic sites of Johnston's organ neurons (JONs). JONs innervating zone E respond tonically to posterior-directed aristal deflection (Yorozu et al., 2009), and are also involved in gravitaxis (Kamikouchi et al., 2009)." [FlyBase:FBrf0194812, FlyBase:FBrf0207518, FlyBase:FBrf0207559] comment: Presence of presynaptic sites determined by immunoreactivity to syntaxin and synaptobrevin::GFP localization (Kamikouchi et al., 2006). Activation of zone E Johnston organ neurons through aristal deflection determined by GCaMP studies (Yorozu et al., 2009, Kamikouchi et al., 2009). synonym: "AMMC zone E" EXACT [] synonym: "ammc zone E" EXACT [FlyBase:FBrf0194812] synonym: "antennal mechanosensory and motor center zone E" EXACT [] synonym: "zone E" RELATED [FlyBase:FBrf0194812] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003982 ! antennal mechanosensory and motor center (Drosophila) [Term] id: FBbt:00100020 name: zone D Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron that innervates zone D of the antennal mechanosensory and motor center (AMMC)." [FlyBase:FBrf0194812] synonym: "zone D JON" EXACT [FlyBase:FBrf0194812] is_a: FBbt:00100000 ! Johnston organ neuron (Drosophila) [Term] id: FBbt:00100021 name: zone E Johnston organ neuron (Drosophila) namespace: fly_anatomy.ontology def: "Johnston's organ neuron that innervates zone E of the antennal mechanosensory and motor center (AMMC). The cell bodies of these neurons are co-mingled with those of zone C Johnston organ neurons, forming a broad ring mainly in the medial and outer layers of the Johnston's organ." [FlyBase:FBrf0194812] comment: Cell body location determined by enhancer trap expression (Kamikouchi et al., 2006). synonym: "zone E JON" EXACT [FlyBase:FBrf0194812] is_a: FBbt:00100000 ! Johnston organ neuron (Drosophila) [Term] id: FBbt:00100022 name: antennal segment 2 microchaeta (Drosophila) namespace: fly_anatomy.ontology def: "Any microchaeta (FBbt:00005182) that is part of some second segment of antenna (FBbt:00004514)." [FBC:auto_generated_definition, FlyBase:FBrf0007734] is_a: FBbt:00005182 ! microchaeta (Drosophila) is_a: FBbt:00005377 ! antennal segment 2 sense organ (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004514 ! second segment of antenna (Drosophila) [Term] id: FBbt:00100023 name: external sensory organ precursor cell IIc (Drosophila) namespace: fly_anatomy.ontology def: "Second-order precursor cell of multi-innervated external sense organs. It divides to produce only neuronal progeny." [FlyBase:FBrf0158845, FlyBase:FBrf0167846] comment: Characterized in developing olfactory sense organs of the antenna (Sen et al., 2003). May not be applicable to other external sense organs. synonym: "SOPIIc" RELATED [] synonym: "pIIc" RELATED [] is_a: FBbt:00005164 ! external sensory organ precursor cell (Drosophila) relationship: develops_from FBbt:00005165 ! external sensory organ precursor cell I (Drosophila) [Term] id: FBbt:00100024 name: abdominal lch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of abdominal lateral monoscolopidial chordotonal organ lch1. Fasciculates in branch a of the segmental nerve (Campos-Ortega and Hartenstein, 1997)." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lch1] subset: hidden_assertion ! Stanza contains hidden assertion. synonym: "lch1x" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lch1] synonym: "v'ch1" EXACT [http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription.html#lch1] is_a: FBbt:00002451 ! abdominal posterior fascicle neuron (Drosophila) is_a: FBbt:00100032 ! lch1 neuron (Drosophila) is_a: FBbt:00100296 ! abdominal sensory neuron (Drosophila) relationship: part_of FBbt:00002823 ! abdominal lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100025 name: abdominal 1 lch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lch1 neuron (FBbt:00100024) that is part of some abdominal 1 lateral monoscolopidial chordotonal organ lch1 (FBbt:00002824)." [FBC:auto_generated_definition] synonym: "abdominal 1 v'ch1 neuron" EXACT [] is_a: FBbt:00001988 ! A1 neuron (Drosophila) is_a: FBbt:00100024 ! abdominal lch1 neuron (Drosophila) relationship: part_of FBbt:00002824 ! abdominal 1 lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100026 name: abdominal 2 l ch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lch1 neuron (FBbt:00100024) that is part of some abdominal 2 lateral monoscolopidial chordotonal organ lch1 (FBbt:00002825)." [FBC:auto_generated_definition] synonym: "abdominal 2 v'ch1 neuron" EXACT [] is_a: FBbt:00001989 ! A2 neuron (Drosophila) is_a: FBbt:00100024 ! abdominal lch1 neuron (Drosophila) relationship: part_of FBbt:00002825 ! abdominal 2 lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100027 name: abdominal 3 lch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lch1 neuron (FBbt:00100024) that is part of some abdominal 3 lateral monoscolopidial chordotonal organ lch1 (FBbt:00002826)." [FBC:auto_generated_definition] synonym: "abdominal 3 v'ch1 neuron" EXACT [] is_a: FBbt:00001990 ! A3 neuron (Drosophila) is_a: FBbt:00100024 ! abdominal lch1 neuron (Drosophila) relationship: part_of FBbt:00002826 ! abdominal 3 lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100028 name: abdominal 4 lch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lch1 neuron (FBbt:00100024) that is part of some abdominal 4 lateral monoscolopidial chordotonal organ lch1 (FBbt:00002827)." [FBC:auto_generated_definition] synonym: "abdominal 4 v'ch1 neuron" EXACT [] is_a: FBbt:00001991 ! A4 neuron (Drosophila) is_a: FBbt:00100024 ! abdominal lch1 neuron (Drosophila) relationship: part_of FBbt:00002827 ! abdominal 4 lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100029 name: abdominal 5 lch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lch1 neuron (FBbt:00100024) that is part of some abdominal 5 lateral monoscolopidial chordotonal organ lch1 (FBbt:00002828)." [FBC:auto_generated_definition] synonym: "abdominal 5 v'ch1 neuron" EXACT [] is_a: FBbt:00001992 ! A5 neuron (Drosophila) is_a: FBbt:00100024 ! abdominal lch1 neuron (Drosophila) relationship: part_of FBbt:00002828 ! abdominal 5 lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100030 name: abdominal 6 lch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lch1 neuron (FBbt:00100024) that is part of some abdominal 6 lateral monoscolopidial chordotonal organ lch1 (FBbt:00002829)." [FBC:auto_generated_definition] synonym: "abdominal 6 v'ch1 neuron" EXACT [] is_a: FBbt:00001993 ! A6 neuron (Drosophila) is_a: FBbt:00100024 ! abdominal lch1 neuron (Drosophila) relationship: part_of FBbt:00002829 ! abdominal 6 lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100031 name: abdominal 7 lch1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any abdominal lch1 neuron (FBbt:00100024) that is part of some abdominal 7 lateral monoscolopidial chordotonal organ lch1 (FBbt:00002830)." [FBC:auto_generated_definition] synonym: "abdominal 7 v'ch1 neuron" EXACT [] is_a: FBbt:00001994 ! A7 neuron (Drosophila) is_a: FBbt:00100024 ! abdominal lch1 neuron (Drosophila) relationship: part_of FBbt:00002830 ! abdominal 7 lateral monoscolopidial chordotonal organ lch1 (Drosophila) [Term] id: FBbt:00100032 name: lch1 neuron (Drosophila) namespace: fly_anatomy.ontology synonym: "v'ch1 neuron" RELATED [] is_a: FBbt:00002038 ! posterior fascicle sensory neuron (Drosophila) [Term] id: FBbt:00100033 name: abdominal dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal, bi-innervated hair of larval abdominal segments 1-7." [FlyBase:FBrf0089570, http://www.normalesup.org/~vorgogoz/FlyPNS/PNSdescription0.html] comment: Note that this organ is reported to be mono-innervated by Campos-Ortega and Hartenstein (1997). synonym: "h4" RELATED [FlyBase:FBrf0089570] is_a: FBbt:00002782 ! larval abdominal sensillum (Drosophila) is_a: FBbt:00005184 ! sensillum trichodeum (Drosophila) relationship: part_of FBbt:00007301 ! embryonic/larval dorsal sensory cluster of A1-7 (Drosophila) [Term] id: FBbt:00100034 name: abdominal 1 dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100033 ! abdominal dorsal sensillum trichodeum dh2 (Drosophila) relationship: part_of FBbt:00001748 ! larval abdominal segment 1 (Drosophila) [Term] id: FBbt:00100035 name: abdominal 2 dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100033 ! abdominal dorsal sensillum trichodeum dh2 (Drosophila) relationship: part_of FBbt:00001749 ! larval abdominal segment 2 (Drosophila) [Term] id: FBbt:00100036 name: abdominal 3 dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100033 ! abdominal dorsal sensillum trichodeum dh2 (Drosophila) relationship: part_of FBbt:00001750 ! larval abdominal segment 3 (Drosophila) [Term] id: FBbt:00100037 name: abdominal 4 dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100033 ! abdominal dorsal sensillum trichodeum dh2 (Drosophila) relationship: part_of FBbt:00001751 ! larval abdominal segment 4 (Drosophila) [Term] id: FBbt:00100038 name: abdominal 5 dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100033 ! abdominal dorsal sensillum trichodeum dh2 (Drosophila) relationship: part_of FBbt:00001752 ! larval abdominal segment 5 (Drosophila) [Term] id: FBbt:00100039 name: abdominal 6 dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100033 ! abdominal dorsal sensillum trichodeum dh2 (Drosophila) relationship: part_of FBbt:00001753 ! larval abdominal segment 6 (Drosophila) [Term] id: FBbt:00100040 name: abdominal 7 dorsal sensillum trichodeum dh2 (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100033 ! abdominal dorsal sensillum trichodeum dh2 (Drosophila) relationship: part_of FBbt:00001754 ! larval abdominal segment 7 (Drosophila) [Term] id: FBbt:00100041 name: S cell (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron responsive to sugars (Montell, 2009), and also amino acids (Dunipace, et al., 2001)." [FlyBase:FBrf0137203, FlyBase:FBrf0208984] synonym: "sugar neuron" RELATED [FlyBase:FBrf0137203] is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) [Term] id: FBbt:00100042 name: W cell (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron responsive to water (Montell, 2009)." [FlyBase:FBrf0208984] synonym: "water neuron" RELATED [FlyBase:FBrf0137203] is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) [Term] id: FBbt:00100043 name: L1 GRN (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron responsive to low concentrations of salt (Montell, 2009)." [FlyBase:FBrf0208984] synonym: "classical salt neuron" RELATED [FlyBase:FBrf0137203] is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) [Term] id: FBbt:00100044 name: L2 GRN (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron responsive to high concentrations of salt (Montell, 2009)." [FlyBase:FBrf0208984] is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) [Term] id: FBbt:00100045 name: carbon dioxide sensitive neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron involved in the detection of carbon dioxide (GO:0003031)." [FlyBase:FBrf0179739, FlyBase:FBrf0208984] synonym: "CO2 sensitive neuron" EXACT [] is_a: CL:0000540 ! neuron [Term] id: FBbt:00100046 name: S-type sensilla S1 (Drosophila) namespace: fly_anatomy.ontology def: "Most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100047 name: S-type sensilla S2 (Drosophila) namespace: fly_anatomy.ontology def: "S-type chemosensilla of the labellum, located posterodorsal to S-type sensilla S1, and more dorsally than S-type sensilla S3." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100048 name: S-type sensilla S3 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior S-type chemosensilla of the labellum. Less dorsally located than S-type sensilla S2." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100049 name: S-type sensilla S4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100050 name: S-type sensilla S5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100051 name: S-type sensilla S6 (Drosophila) namespace: fly_anatomy.ontology def: "Sixth most anterior S-type chemosensilla of the labellum, located slightly more dorsally than S-type sensilla S5." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100052 name: S-type sensilla S7 (Drosophila) namespace: fly_anatomy.ontology def: "Seventh most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100053 name: S-type sensilla S8 (Drosophila) namespace: fly_anatomy.ontology def: "Eighth most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100054 name: S-type sensilla S9 (Drosophila) namespace: fly_anatomy.ontology def: "Ninth most anterior S-type chemosensilla of the labellum, located slightly more dorsally than S-type sensilla S8." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100055 name: S-type sensilla S10 (Drosophila) namespace: fly_anatomy.ontology def: "Tenth most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100056 name: S-type sensilla S11 (Drosophila) namespace: fly_anatomy.ontology def: "If present, eleventh most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100057 name: S-type sensilla S12 (Drosophila) namespace: fly_anatomy.ontology def: "If present, twelfth most anterior S-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100058 name: S-type sensilla S13 (Drosophila) namespace: fly_anatomy.ontology def: "Thirteenth most anterior S-type chemosensilla of the labellum, but is the most posterior of the S-type sensilla if present." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) claim 10-13 bristles are present, whilst Hiroi et al., (2002) claim between 12-13. is_a: FBbt:00007413 ! short labellar taste bristle (Drosophila) [Term] id: FBbt:00100059 name: I-type sensilla I1 (Drosophila) namespace: fly_anatomy.ontology def: "Most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100060 name: I-type sensilla I2 (Drosophila) namespace: fly_anatomy.ontology def: "Second most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100061 name: I-type sensilla I3 (Drosophila) namespace: fly_anatomy.ontology def: "Third most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100062 name: I-type sensilla I4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100063 name: I-type sensilla I5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100064 name: I-type sensilla I6 (Drosophila) namespace: fly_anatomy.ontology def: "Sixth most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100065 name: I-type sensilla I7 (Drosophila) namespace: fly_anatomy.ontology def: "Seventh most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100066 name: I-type sensilla I8 (Drosophila) namespace: fly_anatomy.ontology def: "Eight most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100067 name: I-type sensilla I9 (Drosophila) namespace: fly_anatomy.ontology def: "Ninth most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100068 name: I-type sensilla I10 (Drosophila) namespace: fly_anatomy.ontology def: "If present, tenth most anterior I-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that both Shanbhag et al., (2001) and Hiroi et al., (2002) claim there are between 9 and 10 I-type sensilla present. is_a: FBbt:00007412 ! intermediate labellar taste bristle (Drosophila) [Term] id: FBbt:00100069 name: L-type sensilla L1 (Drosophila) namespace: fly_anatomy.ontology def: "Most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100070 name: L-type sensilla L2 (Drosophila) namespace: fly_anatomy.ontology def: "Second most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100071 name: L-type sensilla L3 (Drosophila) namespace: fly_anatomy.ontology def: "Third most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100072 name: L-type sensilla L4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100073 name: L-type sensilla L5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100074 name: L-type sensilla L6 (Drosophila) namespace: fly_anatomy.ontology def: "Sixth most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100075 name: L-type sensilla L7 (Drosophila) namespace: fly_anatomy.ontology def: "Seventh most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100076 name: L-type sensilla L8 (Drosophila) namespace: fly_anatomy.ontology def: "If present, eighth most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100077 name: L-type sensilla L9 (Drosophila) namespace: fly_anatomy.ontology def: "If present, ninth most anterior L-type chemosensilla of the labellum." [FlyBase:FBrf0137194, FlyBase:FBrf0152351] comment: Naming of sensilla is based on figure 2(b) of Hiroi et al., 2002. Note that Shanbhag et al., (2001) report that there are between 7 and 9 L-type sensilla, whilst Hiroi et al., (2002) claim no variation from 9 sensilla. is_a: FBbt:00007411 ! large labellar taste bristle (Drosophila) [Term] id: FBbt:00100078 name: adult labial sensillum 4 (Drosophila) namespace: fly_anatomy.ontology def: "Fourth most proximal of the small mechanosensory sensilla of the labral sense organ (Nayak and Singh, 1983). The external sensory structure is a hair of 5 micrometers long by 0.5-1 micrometers thick." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100079 name: adult labial sensillum 5 (Drosophila) namespace: fly_anatomy.ontology def: "Fifth most proximal of the small mechanosensory sensilla of the labral sense organ (Nayak and Singh, 1983). The external sensory structure is a hair of 5 micrometers long by 0.5-1 micrometers thick." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100080 name: adult labial sensillum 6 (Drosophila) namespace: fly_anatomy.ontology def: "Sixth most proximal of the small mechanosensory sensilla of the labral sense organ (Nayak and Singh, 1983). The external sensory structure is a hair of 5 micrometers long by 0.5-1 micrometers thick." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100081 name: adult labial sensillum 7 (Drosophila) namespace: fly_anatomy.ontology def: "Largest of the three chemosensory sensilla of the labral sense organ (Nayak and Singh, 1983). It is innervated by 8 monodendritic neurons arranged as two triplets and a pair." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. synonym: "7th LSO" RELATED [] synonym: "LSO" RELATED [] synonym: "Labral number 7" EXACT [FlyBase:FBrf0068700] is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100082 name: adult labial sensillum 8 (Drosophila) namespace: fly_anatomy.ontology def: "One of two medium sized, hairless sensilla of the labral sense organ (Nayak and Singh, 1983). Innervated by one mechanoreceptor and one chemoreceptor." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. synonym: "8th LSO" RELATED [] synonym: "LSO" RELATED [] synonym: "labral number 8" EXACT [FlyBase:FBrf0068700] is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100083 name: adult labial sensillum 9 (Drosophila) namespace: fly_anatomy.ontology def: "One of two medium sized, hairless sensilla of the labral sense organ (Nayak and Singh, 1983). Innervated by one mechanoreceptor and one chemoreceptor." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. synonym: "9th LSO" RELATED [] synonym: "LSO" RELATED [] synonym: "labral number 9" EXACT [FlyBase:FBrf0068700] is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100084 name: adult labial organ (Drosophila) namespace: fly_anatomy.ontology def: "Extending along the hypopharynx (Gendre et al., 2004), this is the distal-most compound external sense organ of the pharynx, consisting of 9 sensilla (Vosshall and Stocker, 2007). Three of these sensilla are gustatory, one with 3 neurons and the others with one each. The remaining 6 sensilla are mechanosensory (Nayak and Singh, 1985)." [FlyBase:FBrf0074012, FlyBase:FBrf0167539, FlyBase:FBrf0200422] synonym: "LiSO" RELATED [FlyBase:FBrf0090735] synonym: "labial sense organ" RELATED [] synonym: "labial sensory organ" RELATED [FlyBase:FBrf0090735] synonym: "labral sense organ" RELATED [FlyBase:FBrf0137203] is_a: FBbt:00007235 ! external compound sense organ (Drosophila) [Term] id: FBbt:00100085 name: adult labial sensillum 1 (Drosophila) namespace: fly_anatomy.ontology def: "Most proximal of the small mechanosensory sensilla of the labral sense organ (Nayak and Singh, 1983). The external sensory structure is a hair of 5 micrometers long by 0.5-1 micrometers thick." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100086 name: adult labial sensillum 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second most proximal of the small mechanosensory sensilla of the labral sense organ (Nayak and Singh, 1983). The external sensory structure is a hair of 5 micrometers long by 0.5-1 micrometers thick." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100087 name: adult labial sensillum 3 (Drosophila) namespace: fly_anatomy.ontology def: "Third most proximal of the small mechanosensory sensilla of the labral sense organ. It is a hairless campaniform plate sensillum (Nayak and Singh, 1983)." [FlyBase:FBrf0074012, FlyBase:FBrf0200422] comment: Numbering of sensilla based on Nayak and Singh (1983), with numbering progressing from most proximal to most distal. is_a: FBbt:00002721 ! labial sensillum (Drosophila) relationship: part_of FBbt:00100084 ! adult labial organ (Drosophila) [Term] id: FBbt:00100088 name: mechanosensory neuron of adult labial sensillum 1 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 1 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100085 ! adult labial sensillum 1 (Drosophila) [Term] id: FBbt:00100089 name: mechanosensory neuron of adult labial sensillum 2 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 2 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100086 ! adult labial sensillum 2 (Drosophila) [Term] id: FBbt:00100090 name: mechanosensory neuron of adult labial sensillum 3 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 3 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100087 ! adult labial sensillum 3 (Drosophila) [Term] id: FBbt:00100091 name: mechanosensory neuron of adult labial sensillum 4 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 4 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100078 ! adult labial sensillum 4 (Drosophila) [Term] id: FBbt:00100092 name: mechanosensory neuron of adult labial sensillum 5 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 5 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100079 ! adult labial sensillum 5 (Drosophila) [Term] id: FBbt:00100093 name: mechanosensory neuron of adult labial sensillum 6 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 6 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100080 ! adult labial sensillum 6 (Drosophila) [Term] id: FBbt:00100094 name: mechanosensory neuron of adult labial sensillum 9 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 9 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100083 ! adult labial sensillum 9 (Drosophila) [Term] id: FBbt:00100095 name: chemosensory neuron of adult labial sensillum 8 (Drosophila) namespace: fly_anatomy.ontology def: "Chemosensory neuron innervating the adult labial sensillum 8 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00100082 ! adult labial sensillum 8 (Drosophila) [Term] id: FBbt:00100096 name: mechanosensory neuron of adult labial sensillum 8 (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating the adult labial sensillum 8 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100082 ! adult labial sensillum 8 (Drosophila) [Term] id: FBbt:00100097 name: chemosensory neuron of adult labial sensillum 9 (Drosophila) namespace: fly_anatomy.ontology def: "Chemosensory neuron innervating the adult labial sensillum 9 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00100083 ! adult labial sensillum 9 (Drosophila) [Term] id: FBbt:00100098 name: chemosensory neuron of adult labial sensillum 7 (Drosophila) namespace: fly_anatomy.ontology def: "One of seven chemosensory neuron innervating the adult labial sensillum 7 (Nayak and Singh, 1983)." [FlyBase:FBrf0074012] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00100081 ! adult labial sensillum 7 (Drosophila) [Term] id: FBbt:00100099 name: adult antenno-cerebral tract (Drosophila) namespace: fly_anatomy.ontology def: "Antenno-cerebral tract of the adult." [FlyBase:FBrf0051437, FlyBase:FBrf0205263] synonym: "antennocerebral tract" RELATED [] is_a: FBbt:00001635 ! antenno-cerebral tract (Drosophila) [Term] id: FBbt:00100100 name: Rh5 photoreceptor of Bolwig organ (Drosophila) namespace: fly_anatomy.ontology def: "Photoreceptor cell of the larval Bolwig's organ that expresses the blue-absorbing rhodopsin Rh5 (lambda[max] = 437nm; FBgn0014019). Fibers pass along the larval optic nerve and terminate in the larval optic neuropil where they have been shown to overlap with serotonergic arborizations (Rodriguez Moncalvo and Campos, 2005). There are about 4 of these per Bolwig organ." [FlyBase:FBrf0144829, FlyBase:FBrf0190156] synonym: "Rh5 photoreceptor of Bolwig's organ" RELATED [] synonym: "Rh5-expressing photoreceptor of Bolwig's organ" EXACT [] is_a: FBbt:00007253 ! photoreceptor cell of Bolwig organ (Drosophila) [Term] id: FBbt:00100101 name: dorsal row bristle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a dorsal row bristle of the cibarium." [FlyBase:FBrf0074012] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00004137 ! dorsal row bristle of the cibarium (Drosophila) [Term] id: FBbt:00100102 name: ventral row bristle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a ventral row bristle of the cibarium." [FlyBase:FBrf0074012] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00004138 ! ventral row bristle of the cibarium (Drosophila) [Term] id: FBbt:00100103 name: dorsal triple row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Multiply innervated, recurved bristle of the dorsal triple row involved in chemosensation. This bristle has a conspicuous terminal pore." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: Palka et al., (1979) show that of the five dendrites innervating the wing margin chemosensory bristles, one contains a microtubular body, suggesting it to be a mechanosensory neuron. That this bristle is chemosensory in nature is based on the presence of the terminal pore and multiple innervation with dendrites extending to the pore (Palka et al., 1979). synonym: "chemosensory dorsal triple row bristle" EXACT [] synonym: "recurved, polyinnervated, chemosensory bristle" RELATED [] is_a: FBbt:00004326 ! wing margin bristle (Drosophila) is_a: FBbt:00005178 ! taste bristle (Drosophila) relationship: part_of FBbt:00004330 ! dorsal triple row (Drosophila) [Term] id: FBbt:00100104 name: dorsal triple row bristle chemosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Chemosensory neuron innervating a dorsal triple row chemosensory bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: This bristle is believed to be chemosensory based on the presence of the terminal pore and multiple innervation with dendrites extending to the pore (Palka et al., 1979). is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005922 ! chemosensory neuron (Drosophila) relationship: part_of FBbt:00100103 ! dorsal triple row bristle (Drosophila) [Term] id: FBbt:00100105 name: dorsal triple row bristle mechanosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a dorsal triple row chemosensory bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: Palka et al., (1979) show that of the five dendrites innervating a bristles of the dorsal triple row, one contains a microtubular body, suggesting it to be a mechanosensory neuron. is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100103 ! dorsal triple row bristle (Drosophila) [Term] id: FBbt:00100106 name: ventral triple row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Bristle of the ventral triple row." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00004326 ! wing margin bristle (Drosophila) relationship: part_of FBbt:00004334 ! ventral triple row (Drosophila) [Term] id: FBbt:00100107 name: ventral double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Bristle located in the ventral double row." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00004326 ! wing margin bristle (Drosophila) relationship: part_of FBbt:00004337 ! ventral double row (Drosophila) [Term] id: FBbt:00100108 name: chemosensory ventral double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Multiply innervated, recurved chemosensory bristle of the ventral double row with a conspicuous terminal pore." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: Palka et al., (1979) show that of the five dendrites innervating the wing margin chemosensory bristles, one contains a microtubular body, suggesting it to be a mechanosensory neuron. That this bristle is chemosensory in nature is based on the presence of the terminal pore and multiple innervation with dendrites extending to the pore (Palka et al., 1979). subset: cur ! cur synonym: "recurved, polyinnervated, chemosensory bristle" RELATED [] synonym: "vTR" RELATED [] synonym: "ventral triple row chemosensory bristle" RELATED [] is_a: FBbt:00005178 ! taste bristle (Drosophila) is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) is_a: FBbt:00100107 ! ventral double row bristle (Drosophila) relationship: part_of FBbt:00004337 ! ventral double row (Drosophila) [Term] id: FBbt:00100109 name: mechanosensory ventral double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory bristle of the ventral double row." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: That this bristle is mechanosensory is primarily based on the presence of a characteristic microtubular body present in the single innervating neuron (Palka et al., 1979). subset: cur ! cur synonym: "slender, mechanosensory, singly innervated bristle" RELATED [] synonym: "vTR" RELATED [] synonym: "ventral triple row mechanosensory bristle" RELATED [] is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) is_a: FBbt:00100107 ! ventral double row bristle (Drosophila) [Term] id: FBbt:00100110 name: ventral triple row bristle chemosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Chemosensory neuron innervating a ventral triple row chemosensory bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00004335 ! chemosensory ventral triple row bristle (Drosophila) [Term] id: FBbt:00100111 name: mechanosensory neuron of mechanosensory ventral triple row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a mechanosensory ventral triple row bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] synonym: "ventral triple row bristle mechanosensory neuron" EXACT [] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00004336 ! mechanosensory ventral triple row bristle (Drosophila) [Term] id: FBbt:00100112 name: Rh6 photoreceptor of Bolwig organ (Drosophila) namespace: fly_anatomy.ontology def: "Photoreceptor cell of the larval Bolwig's organ expressing the green-absorbing opsin Rh6 (lambda[max] = 508nm; FBgn0019940). Fibers pass along the larval optic nerve and terminate in the larval optic neuropil where they have been shown to overlap with, and influence the development of, serotonergic arborizations (Rodriguez Moncalvo and Campos, 2005). There are approximately 8 of these per Bolwig organ." [FlyBase:FBrf0144829, FlyBase:FBrf0190156] comment: Rodriguez Moncalvo and Campos (2005), show that genetic ablation or synaptic silencing of the Rh6 photoreceptor of Bolwig organ prevents the wildtype development of overlapping serotonergic arborizations. synonym: "Rh6 photoreceptor of Bolwig's organ" EXACT [] synonym: "Rh6-expressing photoreceptor of Bolwig organ" EXACT [] is_a: FBbt:00007253 ! photoreceptor cell of Bolwig organ (Drosophila) [Term] id: FBbt:00100113 name: marginal nerve (Drosophila) namespace: fly_anatomy.ontology def: "The marginal nerve carries axons of bristle sensilla of the triple row and the double row plus the large twin sensilla of the margin and the giant sensillum of the radius (Polka et al., 1979)." [FlyBase:FBrf0032909] is_a: FBbt:00004080 ! wing nerve (Drosophila) [Term] id: FBbt:00100114 name: twin sensillum of margin 1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the twin sensillum of margin 1. This neuron, which begins axonogenesis 1hr AP, pioneers the segment of nerve L1 which joins the L3 bundle (Murray et al., 1984)." [FlyBase:FBrf0040724] comment: Murray et al., (1984) state that they do not know if the pioneering twin sensillum of margin 1 neuron is the proximal or distal of the two twin sensilla. synonym: "TSM(1)" RELATED [] synonym: "tsm(1) neuron" RELATED [] is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00004338 ! twin sensillum of margin 1 (Drosophila) [Term] id: FBbt:00100115 name: twin sensillum of margin 2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the twin sensillum of margin 2. This neuron begins axonogenesis at approximately 9-10 hours AP (Murray et al., 1984)." [FlyBase:FBrf0040724] synonym: "TSM(2)" RELATED [] synonym: "tsm(2) neuron" RELATED [FlyBase:FBrf0040724] is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00004339 ! twin sensillum of margin 2 (Drosophila) [Term] id: FBbt:00100116 name: giant sensillum of the dorsal radius neuron (Drosophila) namespace: fly_anatomy.ontology def: "Large sensory neuron (approximately 20 by 10 micrometres) innervating the single large campaniform sensillum of the dorsal radius (Palka et al., 1979)." [FlyBase:FBrf0032909, FlyBase:FBrf0040724] comment: Murray et al., (1984) state that \"...each neuron of the adult wing is conventionally designated by the abbreviation of the name of the sensillum to which it belongs, e.g. the neuron of the giant sensillum of the radius is called the GSR\". We do not use this convention as it will likely result in confusion, but instead use it as a synonym. synonym: "GSR" RELATED [FlyBase:FBrf0040724] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004083 ! giant sensillum of the distal radius (Drosophila) [Term] id: FBbt:00100117 name: chemosensory ventral double row bristle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Chemosensory neuron innervating a chemosensory ventral double row bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00100108 ! chemosensory ventral double row bristle (Drosophila) [Term] id: FBbt:00100118 name: mechanosensory ventral double row bristle neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron involved in mechanosensation innervating a mechanosensory ventral double row bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100109 ! mechanosensory ventral double row bristle (Drosophila) [Term] id: FBbt:00100119 name: L3 nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve bundle running through wing vein L3." [FlyBase:FBrf0040724] is_a: FBbt:00004080 ! wing nerve (Drosophila) relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00100120 name: anterior crossvein campaniform sensillum neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron associated with the wing anterior crossvein sensillum (Murray et al., 1984)." [FlyBase:FBrf0040724] synonym: "ACV" RELATED [] synonym: "sensillum campaniformium of anterior crossvein neuron" EXACT [] is_a: FBbt:00005174 ! eo neuron (Drosophila) relationship: part_of FBbt:00004086 ! anterior crossvein campaniform sensillum (Drosophila) [Term] id: FBbt:00100121 name: E-1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron associated with the anterior crossvein campaniform sensillum neuron, but does not possess a typical dendrite whose conspicuous distal tip can be seen near the surface of the epithelium (Murray et al., 1984)." [FlyBase:FBrf0040724] synonym: "extra cell-1" RELATED [FlyBase:FBrf0040724] synonym: "first extra cell along vein L3" RELATED [FlyBase:FBrf0040724] is_a: CL:0000540 ! neuron relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00100122 name: dorsal humeral crossvein campaniform sensillum neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the dorsal humeral crossvein campaniform sensillum." [FlyBase:FBrf0040724] comment: Along with the ventral humeral crossvein campaniform sensillum neuron, this neuron pioneers the proximal two thirds of the costal nerve path (Murray et al., 1984). is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004084 ! dorsal humeral crossvein campaniform sensillum (Drosophila) [Term] id: FBbt:00100123 name: costal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Nerve composed of axons collected from the marginal sensilla of the distal, medial and proximal costa, as well as the tegula." [FlyBase:FBrf0032909] is_a: FBbt:00004080 ! wing nerve (Drosophila) [Term] id: FBbt:00100124 name: ventral humeral crossvein campaniform sensillum neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the ventral humeral crossvein campaniform sensillum." [FlyBase:FBrf0040724] comment: Along with the dorsal humeral crossvein campaniform sensillum neuron, this neuron pioneers the proximal two thirds of the costal nerve path (Murray et al., 1984). is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004085 ! ventral humeral crossvein campaniform sensillum (Drosophila) [Term] id: FBbt:00100125 name: ventral sensillum of wing vein 3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the ventral sensillum of wing vein 3." [FlyBase:FBrf0040724] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004090 ! ventral campaniform sensillum of wing vein L3 (Drosophila) [Term] id: FBbt:00100126 name: campaniform sensillum L3-1 of wing vein L3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the L3-1 campaniform sensillum of wing vein L3." [FlyBase:FBrf0040724] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004087 ! campaniform sensillum L3-1 of wing vein L3 (Drosophila) [Term] id: FBbt:00100127 name: campaniform sensillum L3-2 of wing vein L3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the second, medially located campaniform sensillum of wing vein L3." [FlyBase:FBrf0040724] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004088 ! campaniform sensillum L3-2 of wing vein L3 (Drosophila) [Term] id: FBbt:00100128 name: campaniform sensillum L3-3 of wing vein L3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron innervating the campaniform sensillum L3-3 of wing vein L3." [FlyBase:FBrf0040724] synonym: "L3-3" RELATED [] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00004089 ! campaniform sensillum L3-3 of wing vein L3 (Drosophila) [Term] id: FBbt:00100129 name: E-2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron located near to the campaniform sensillum L3-2 of wing vein L3 neuron, but does not possess a typical dendrite whose conspicuous distal tip can be seen near the surface of the epithelium (Murray et al., 1984)." [FlyBase:FBrf0040724] synonym: "extra cell-2" RELATED [FlyBase:FBrf0040724] synonym: "second extra cell along vein L3" RELATED [FlyBase:FBrf0040724] is_a: CL:0000540 ! neuron relationship: part_of FBbt:00004761 ! wing vein L3 (Drosophila) [Term] id: FBbt:00100130 name: E-T neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron located near to the neuron innervating the twin sensillum of margin 1 and 2. It does not possess a typical dendrite whose conspicuous distal tip can be seen near the surface of the epithelium (Murray et al., 1984)." [FlyBase:FBrf0040724] synonym: "extra cell E-T" RELATED [FlyBase:FBrf0040724] synonym: "extra cell associated with the TSM" RELATED [FlyBase:FBrf0040724] is_a: CL:0000540 ! neuron relationship: part_of FBbt:00004759 ! wing vein L1 (Drosophila) [Term] id: FBbt:00100131 name: chemosensory sensillum of the female genitalia (Drosophila) namespace: fly_anatomy.ontology def: "Short, blunt-tipped thorn bristle or spine bristle located on the adult vaginal plate. There are around 10 bilateral pairs of thorn bristles and around 3 bilateral pairs of spine bristles." [FlyBase:FBrf0050360, FlyBase:FBrf0068700, FlyBase:FBrf0204415] comment: Note: currently there is no direct evidence that these neurons are definitely chemosensory. That they are likely to be chemosensory in nature is based on their morphology (Taylor, 1989), that they are multiply innervated (Taylor, 1989), and behavioural observations of the animals during egg laying (Yang et al., 2008). synonym: "female genital gustatory sensillum" EXACT [] is_a: FBbt:00004465 ! female terminalia sensillum (Drosophila) is_a: UBERON:0000005 ! chemosensory organ relationship: part_of FBbt:00004827 ! female genitalia (Drosophila) [Term] id: FBbt:00100132 name: mesothoracic leg taste bristle chemosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory neuron innervating a mesothoracic leg taste bristle. There are between 2 and 4 per bristle (Stocker 1994)." [FlyBase:FBrf0068700] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00004363 ! mesothoracic leg taste bristle (Drosophila) [Term] id: FBbt:00100133 name: mesothoracic leg taste bristle mechanosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a mesothoracic leg taste bristle. Each bristle is singly innervated by a mechanosensory neuron (Stocker 1994)." [FlyBase:FBrf0068700] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00004363 ! mesothoracic leg taste bristle (Drosophila) [Term] id: FBbt:00100134 name: metathoracic leg taste bristle chemosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory neuron innervating a metathoracic leg taste bristle. There are between 2 and 4 per bristle (Stocker 1994)." [FlyBase:FBrf0068700] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00004421 ! metathoracic leg taste bristle (Drosophila) [Term] id: FBbt:00100135 name: metathoracic leg taste bristle mechanosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a metathoracic leg taste bristle. Each bristle is singly innervated by a mechanosensory neuron (Stocker 1994)." [FlyBase:FBrf0068700] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00004421 ! metathoracic leg taste bristle (Drosophila) [Term] id: FBbt:00100136 name: prothoracic leg taste bristle chemosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory neuron innervating a prothoracic leg taste bristle. There are between 2 and 4 per bristle (Stocker 1994)." [FlyBase:FBrf0068700] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00004253 ! prothoracic leg taste bristle (Drosophila) [Term] id: FBbt:00100137 name: prothoracic leg taste bristle mechanosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a prothoracic leg taste bristle. Each bristle is singly innervated by a mechanosensory neuron (Stocker 1994)." [FlyBase:FBrf0068700] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00004253 ! prothoracic leg taste bristle (Drosophila) [Term] id: FBbt:00100138 name: embryonic/larval subesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Region of the embryonic/larval brain consisting of the fused ganglia of the three gnathal segments. The anterior-most part of this ganglion lies between the two brain hemispheres. Its posterior boundary with the thoracic ganglia lies within the ventral nerve cord. During metamorphosis this posterior boundary constricts to form the cervical connective." [FlyBase:FBrf0007733] comment: DISAMBIGUATION: Scott et al., 2001 (FBrf0134489) use the term hindbrain to refer to a region that appears to correspond to the subesophageal ganglion as defined here. They use subesophageal ganglion to refer only to the part of this region that lies between the two brain hemispheres. synonym: "SOG" BROAD [] synonym: "embryonic/larval SOG" EXACT [] synonym: "hindbrain" RELATED [FlyBase:FBrf0134489] is_a: FBbt:00004013 ! subesophageal ganglion (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100139 name: embryonic/larval subesophageal ganglion area 1 (Drosophila) namespace: fly_anatomy.ontology def: "Chemosensory neuron target area located at the midline of the larval subesophageal ganglion (SOG). This area receives input from pharyngeal chemosensory neurons (the dorsal pharyngeal sense organ, the dorsal pharyngeal organ, and the posterior pharyngeal sense organ) (Colomb et al., 2007)." [FlyBase:FBrf0167539, FlyBase:FBrf0201176, FlyBase:FBrf0201188] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00100138 ! embryonic/larval subesophageal ganglion (Drosophila) [Term] id: FBbt:00100140 name: embryonic/larval subesophageal ganglion area 2 (Drosophila) namespace: fly_anatomy.ontology def: "Large chemosensory target area located adjacent to area 1 of the larval subesophageal ganglion. This region receives input from the dorsal pharyngeal sense organ, the ventral pharyngeal sense organ, the posterior pharyngeal sense organ, the dorsal pharyngeal organ, the terminal organ, and the ventral pharyngeal sense organ (Colomb et al., 2007)." [FlyBase:FBrf0167539, FlyBase:FBrf0201176, FlyBase:FBrf0201188] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00100138 ! embryonic/larval subesophageal ganglion (Drosophila) [Term] id: FBbt:00100141 name: embryonic/larval subesophageal ganglion area 3 (Drosophila) namespace: fly_anatomy.ontology def: "Small chemosensory target area located laterally in the larval subesophageal ganglion. This region receives input from non-olfactory neurons of the dorsal organ and from thoracic projections originating in the Kolbchen (also called the 'ventral pit'; Colomb et al., 2007)." [FlyBase:FBrf0167539, FlyBase:FBrf0201176, FlyBase:FBrf0201188] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00100138 ! embryonic/larval subesophageal ganglion (Drosophila) [Term] id: FBbt:00100142 name: embryonic/larval subesophageal ganglion area 4 (Drosophila) namespace: fly_anatomy.ontology def: "Large chemosensory target area of the larval subesophageal ganglion, located adjacent to the antennal lobes. One or a few neurites from dorsal pharyngeal sense organ neuron(s), and an atypical dorsal organ neuron whose dendrites extend into the terminal organ, target this region (Colomb et al., 2007)." [FlyBase:FBrf0167539, FlyBase:FBrf0201176, FlyBase:FBrf0201188] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00100138 ! embryonic/larval subesophageal ganglion (Drosophila) [Term] id: FBbt:00100143 name: terminal organ neuron of dorsal organ ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose dendrite innervates the terminal organ but whose soma is located in the dorsal organ ganglion rather than the terminal organ ganglion. The axons of these neurons project via the antennal nerve into area 4 of the subesophageal ganglion. There are 3 of these neurons per terminal organ." [FlyBase:FBrf0201176] synonym: "TODO neuron" EXACT [FlyBase:FBrf0201176] synonym: "atypical TODO neuron" EXACT [FlyBase:FBrf0201176] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00002690 ! terminal organ (Drosophila) [Term] id: FBbt:00100144 name: gustatory receptor neuron of terminal organ (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron associated with the terminal organ." [FlyBase:FBrf0089570, FlyBase:FBrf0134489, FlyBase:FBrf0147119] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00002690 ! terminal organ (Drosophila) [Term] id: FBbt:00100145 name: gustatory receptor neuron of the dorsal organ (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron that innervates the dorsal organ. Projections from at least some of these neurons innervate `subesophageal ganglion area 3` (FBbt:00100141) (Colomb et al., 2007)." [FlyBase:FBrf0089570, FlyBase:FBrf0134489, FlyBase:FBrf0147119, FlyBase:FBrf0201176] subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00002655 ! dorsal organ (Drosophila) [Term] id: FBbt:00100146 name: gustatory receptor neuron of the ventral organ (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron that innervates the ventral organ." [FlyBase:FBrf0089570, FlyBase:FBrf0134489, FlyBase:FBrf0147119] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00002707 ! ventral organ (Drosophila) [Term] id: FBbt:00100147 name: gustatory receptor neuron of the epiphysis (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor that innervates the epiphysis." [FlyBase:FBrf0089570, FlyBase:FBrf0134489, FlyBase:FBrf0147119] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00007281 ! epiphysis (Drosophila) [Term] id: FBbt:00100148 name: gustatory receptor neuron of the hypophysis (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor neuron that innervates the hypophysis." [FlyBase:FBrf0089570, FlyBase:FBrf0134489, FlyBase:FBrf0147119] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00002719 ! hypophysis (Drosophila) [Term] id: FBbt:00100149 name: gustatory receptor neuron of the hypopharyngeal sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Gustatory receptor organ that innervates hypopharyngeal sense organ." [FlyBase:FBrf0089570, FlyBase:FBrf0134489, FlyBase:FBrf0147119] is_a: FBbt:00005163 ! sensory organ cell (Drosophila) is_a: FBbt:00005927 ! gustatory receptor neuron (Drosophila) relationship: part_of FBbt:00002665 ! hypopharyngeal sense organ (Drosophila) [Term] id: FBbt:00100150 name: medial triple row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Stout, singly innervated bristle of the medial triple row. This bristle is mechanosensory." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: This bristle type is believed to be mechanosensory based on the presence of a characteristic microtubular body present in the single innervating neuron (Palka et al., 1979). synonym: "mechanosensory medial triple row bristle" EXACT [] synonym: "stout, mechanosensory, singly innervated bristle" RELATED [] is_a: FBbt:00004326 ! wing margin bristle (Drosophila) is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) relationship: part_of FBbt:00004331 ! medial triple row (Drosophila) [Term] id: FBbt:00100151 name: dorsal double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Bristle that is part of the dorsal double row." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00004326 ! wing margin bristle (Drosophila) relationship: part_of FBbt:00004332 ! dorsal double row (Drosophila) [Term] id: FBbt:00100152 name: row (Drosophila) namespace: fly_anatomy.ontology def: "Anatomical group whose component structures are arranged in a row." [FBC:DOS] is_a: FBbt:00007276 ! anatomical group (Drosophila) [Term] id: FBbt:00100153 name: sensilla row (Drosophila) namespace: fly_anatomy.ontology def: "A row of sensilla." [FBC:DOS] is_a: FBbt:00100152 ! row (Drosophila) [Term] id: FBbt:00100154 name: array of rows (Drosophila) namespace: fly_anatomy.ontology def: "Multiple parallel rows." [FBC:SPR] is_a: UBERON:0000477 ! anatomical cluster [Term] id: FBbt:00100155 name: array of sensilla rows (Drosophila) namespace: fly_anatomy.ontology def: "Multiple, parallel rows if sensilla." [FBC:SPR] is_a: FBbt:00100154 ! array of rows (Drosophila) [Term] id: FBbt:00100156 name: proximal sensillum of ventral cibarial sense organ (Drosophila) namespace: fly_anatomy.ontology def: "Most proximal sensillum of the ventral cibarial sense organ. It is innervated by two neurons (Gendre et al., 2003)." [FlyBase:FBrf0035962, FlyBase:FBrf0068700, FlyBase:FBrf0074012, FlyBase:FBrf0075527, FlyBase:FBrf0167539] synonym: "3rd VCSO" BROAD [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004143 ! ventral cibarial sense organ (Drosophila) [Term] id: FBbt:00100157 name: distal sensillum of ventral cibarial sense organ (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004144 def: "Distal-most sensillum of the ventral cibarial sense organ. It is innervated by four neurons (Gendre et al., 2003)." [FlyBase:FBrf0035962, FlyBase:FBrf0068700, FlyBase:FBrf0074012, FlyBase:FBrf0075527, FlyBase:FBrf0167539] synonym: "1st VCSO" EXACT [] synonym: "VCSO1" RELATED [] synonym: "ventral cibarial sensillum 1" EXACT [] is_a: FBbt:00007231 ! external sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004143 ! ventral cibarial sense organ (Drosophila) [Term] id: FBbt:00100158 name: middle sensillum of ventral cibarial sense organ (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00004145 def: "Middle-most sensillum of the ventral cibarial sense organ. It is innervated by 2 neurons (Gendre et al., 2003)." [FlyBase:FBrf0035962, FlyBase:FBrf0068700, FlyBase:FBrf0074012, FlyBase:FBrf0075527, FlyBase:FBrf0167539] synonym: "2nd VCSO" EXACT [] synonym: "VCSO2" RELATED [] synonym: "ventral cibarial sensillum 2" EXACT [] is_a: FBbt:00007231 ! external sensillum (Drosophila) is_a: FBbt:00007241 ! adult head sensillum (Drosophila) relationship: part_of FBbt:00004143 ! ventral cibarial sense organ (Drosophila) [Term] id: FBbt:00100159 name: ventral cibarial sense organ neuron of middle sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Neuron that innervates the middle sensillum of the ventral cibarial sense organ. There are two of these per sensillum." [FlyBase:FBrf0068700, FlyBase:FBrf0074012] comment: Nayak & Singh (1983) claim the ventral cibarial sense organ is composed of two sensilla: the ventral and the dorsal sensilla. In contrast, Montell (2009), Vosshall & Stocker (2007), and Stocker & Schorderet (1981) report three sensilla: the proximal, the middle and the distal sensilla. This is shown via enhancer trap activity in Gendre et al., 1994. Similarly, the number of chemosensory neurons varies: both Nayak & Singh (1983), and Stocker (1994) report 6, whilst Gendre et al., (1994), Montell (2009), and Vosshall & Stocker (2007) report 8. subset: cur ! cur is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00100158 ! middle sensillum of ventral cibarial sense organ (Drosophila) [Term] id: FBbt:00100160 name: ventral cibarial sense organ neuron of distal sensillum (Drosophila) namespace: fly_anatomy.ontology def: "Neurons that innervates the distal sensillum of the ventral cibarial sense organ. There are four of these per sensillum." [FlyBase:FBrf0068700, FlyBase:FBrf0074012] subset: cur ! cur is_a: CL:0000101 ! sensory neuron is_a: FBbt:00005163 ! sensory organ cell (Drosophila) relationship: part_of FBbt:00100157 ! distal sensillum of ventral cibarial sense organ (Drosophila) [Term] id: FBbt:00100161 name: ventral row of the cibarium (Drosophila) namespace: fly_anatomy.ontology def: "Most ventral of the two cibarial bristle rows. Consists of twelve to fifteen small bristles in the cibarium, each innervated by a single mechanoreceptor (Stocker and Schorderet, 1981; Nayak and Singh, 1983)." [FlyBase:FBrf0035962, FlyBase:FBrf0053815, FlyBase:FBrf0074012, FlyBase:FBrf0167539] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00100162 name: dorsal row of the cibarium (Drosophila) namespace: fly_anatomy.ontology def: "Most dorsal of the two cibarial bristle rows. Consists of six to eight large bristles in the cibarium, each innervated by a single mechanoreceptor (Stocker and Schorderet, 1981; Nayak and Singh, 1983)." [FlyBase:FBrf0035962, FlyBase:FBrf0074012] is_a: FBbt:00100153 ! sensilla row (Drosophila) relationship: part_of FBbt:00004526 ! adult cibarium (Drosophila) [Term] id: FBbt:00100163 name: adult pacemaker neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pacemaker neuron that is part of the adult nervous system." [FBC:SPR] is_a: FBbt:00006048 ! pacemaker neuron (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00100164 name: larval pacemaker neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pacemaker neuron that is part of the larval nervous system." [FBC:SPR] is_a: FBbt:00006048 ! pacemaker neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100165 name: pupal pacemaker neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pacemaker neuron that is part of the pupa." [FBC:SPR] is_a: FBbt:00006048 ! pacemaker neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100166 name: larval Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Larval neuron that expresses Pdf (FBgn0023178)." [FBC:SPR] is_a: FBbt:00003761 ! Pdf neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100167 name: larval s-LNv Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Larval s-LNv neuron expressing Pdf (FBgn0023178) from 4-5 hour after hatching. Its cell body is located close to the larval optic neuropil into which putative dendritic fibers extend. The presumed axon extends to the dorsal part of the brain lobes. There are 2-4 of these per hemisphere." [FlyBase:FBrf0093121] synonym: "small PDFMe neuron" RELATED [] is_a: FBbt:00100166 ! larval Pdf neuron (Drosophila) is_a: FBbt:00100177 ! larval s-LNv neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100168 name: larval Pdf neuron close to calyx (Drosophila) namespace: fly_anatomy.ontology def: "Larval Pdf (FBgn0023178) expressing neuron whose cell body lies in a cluster within the dorsal cortex. Pdf expression begins late in L1. Its process project into the median ventral brain dorsolateral to the esophagus. There are two to four of these neurons per cluster." [FlyBase:FBrf0093121] comment: Helfrich-Forster (1997) notes that the Pdf staining is faint and is only visible in 50% of examined larval brains. synonym: "PDFCa" RELATED [] is_a: FBbt:00100166 ! larval Pdf neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100169 name: larval Pdf neuron of abdominal neuromere (Drosophila) namespace: fly_anatomy.ontology def: "Pdf (FBgn0023178) expressing neuron whose cell body is located in a cluster in the eighth larval abdominal neuromere of the ventral ganglion. There are 8 of these per cluster - each projecting though the paired eighth abdominal nerve to the posterior end of the larva." [FlyBase:FBrf0093121] synonym: "PDFAb neuron" RELATED [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00001987 ! abdominal neuron (Drosophila) is_a: FBbt:00100166 ! larval Pdf neuron (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) relationship: part_of FBbt:00004097 ! abdominal neuromere (Drosophila) [Term] id: FBbt:00100170 name: extra LNd neuron (Drosophila) namespace: fly_anatomy.ontology def: "LNd neuron characterized by having a slightly larger nucleus and cytoplasmic area compared to the other LNd neurons." [FlyBase:FBrf0191052] comment: Rieger et al., (2006) comment that the extra LNd also stains more strongly for Period (FBgn0003068) and Timeless (FBgn0014396) compared to the other LNd neurons. Under constant light (LL) conditions, the extra LNd neuron is the only LNd neuron which shows significant Period and Timeless cycling. is_a: FBbt:00004045 ! LNd neuron (Drosophila) [Term] id: FBbt:00100171 name: adult Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pdf expressing neuron that is part of the adult." [FBC:SPR] is_a: FBbt:00003761 ! Pdf neuron (Drosophila) relationship: part_of UBERON:0007023 ! adult organism [Term] id: FBbt:00100172 name: pupal Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pdf expressing neuron that is part of the pupa." [FBC:SPR] is_a: FBbt:00003761 ! Pdf neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100173 name: pupal s-LNv Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pupal s-LNv that expresses Pdf (FBgn0023178). There are four of these per cluster of pupal s-LNv neurons." [FlyBase:FBrf0093121] synonym: "PDFMe" RELATED [] synonym: "pupal PDF medulla neuron" RELATED [] is_a: FBbt:00100172 ! pupal Pdf neuron (Drosophila) is_a: FBbt:00100179 ! pupal s-LNv neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100174 name: pupal l-LNv Pdf neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pdf (FBgn0023178) neuron of the period-expressing LNv cluster, with a large cell body and generally located more dorsally than the s-LNv neurons. These cells begin to express Pdf at approximately 50% of pupal development." [FlyBase:FBrf0093121] synonym: "pupal lLNv" RELATED [] synonym: "pupal large LNv" RELATED [] synonym: "pupal large pigment-dispersing hormone-immunoreactive neuron close to medulla." RELATED [] is_a: FBbt:00100172 ! pupal Pdf neuron (Drosophila) is_a: FBbt:00100185 ! pupal LN period neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100175 name: pupal Pdf neuron close to calyx (Drosophila) namespace: fly_anatomy.ontology def: "Neuron of the pupa that is located dorsoanterior to the calyx of the mushroom body and that expresses Pdf (FBgn0023178)." [FlyBase:FBrf0093121] is_a: FBbt:00100172 ! pupal Pdf neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100176 name: pupal Pdf neuron close to tritocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Pupal Pdf expressing neuron whose soma is located in a cluster antero-ventral the tritocerebrum. There are 2-4 of these per cluster." [FlyBase:FBrf0093121] synonym: "pupal PdfTri" RELATED [] is_a: FBbt:00100172 ! pupal Pdf neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100177 name: larval s-LNv neuron (Drosophila) namespace: fly_anatomy.ontology def: "Larval neuron of the period-expressing LNv cluster, with a small cell body and generally located more dorsally than the l-LNv neurons. There are 5 cells present in each cluster, all except one of which express Pdf (FBgn0023178)." [FlyBase:FBrf0098279, FlyBase:FBrf0101921] synonym: "s-LNv" RELATED [] is_a: FBbt:00001913 ! larval LN period neuron (Drosophila) [Term] id: FBbt:00100178 name: larval Pdf negative s-LNv neuron (Drosophila) namespace: fly_anatomy.ontology def: "Larval s-LNv neuron that does not express Pdf (FBgn0023178). There is only one of these per ventral cluster of LN period neurons." [FlyBase:FBrf0098279] is_a: FBbt:00100177 ! larval s-LNv neuron (Drosophila) [Term] id: FBbt:00100179 name: pupal s-LNv neuron (Drosophila) namespace: fly_anatomy.ontology def: "Larval neuron of the period-expressing LNv cluster, with a small cell body and generally located more dorsally than the l-LNv neurons. There are 5 cells present in each cluster, all except one of which express Pdf (FBgn0023178)." [FlyBase:FBrf0093121, FlyBase:FBrf0098279] is_a: FBbt:00100185 ! pupal LN period neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100180 name: pupal Pdf negative s-LNv neuron (Drosophila) namespace: fly_anatomy.ontology def: "Pupal s-LNv neuron that does not express Pdf (FBgn0023178) (Kaneko et al., 1997). There is only one of these per ventral cluster of LN period neurons." [FlyBase:FBrf0093121, FlyBase:FBrf0098279] synonym: "5th small LNv" RELATED [] synonym: "fifth LN" RELATED [] synonym: "fifth s-LNv" RELATED [] is_a: FBbt:00100179 ! pupal s-LNv neuron (Drosophila) [Term] id: FBbt:00100181 name: small larval Pdf neuron of abdominal neuromere (Drosophila) namespace: fly_anatomy.ontology def: "Larval Pdf neuron of the abdominal neuromere with a smaller cell body than the larger Pdf neurons that are located more ventral and anteriorly (Helfrich-Forster, 1997)." [FlyBase:FBrf0093121, FlyBase:FBrf0209505] is_a: FBbt:00100169 ! larval Pdf neuron of abdominal neuromere (Drosophila) [Term] id: FBbt:00100182 name: large larval Pdf neuron of the abdominal neuromere (Drosophila) namespace: fly_anatomy.ontology def: "Larval Pdf neuron of the abdominal neuromere with a larger cell body than the larger Pdf neurons that are located more posteriorly (Helfrich-Forster, 1997)." [FlyBase:FBrf0093121, FlyBase:FBrf0209505] is_a: FBbt:00100169 ! larval Pdf neuron of abdominal neuromere (Drosophila) [Term] id: FBbt:00100183 name: small adult Pdf neuron of abdominal segment (Drosophila) namespace: fly_anatomy.ontology def: "Larval Pdf neuron of the abdominal neuromere with a smaller cell body than the larger Pdf neurons that are located more ventral and anteriorly (Helfrich-Forster, 1997)." [FlyBase:FBrf0093121, FlyBase:FBrf0209505] is_a: FBbt:00004100 ! Pdf neuron of abdominal neuromere (Drosophila) [Term] id: FBbt:00100184 name: large adult Pdf neuron of abdominal neuromere (Drosophila) namespace: fly_anatomy.ontology def: "Larval Pdf neuron of the abdominal neuromere with a larger cell body than the larger Pdf neurons that are located more posteriorly (Helfrich-Forster, 1997)." [FlyBase:FBrf0093121, FlyBase:FBrf0209505] is_a: FBbt:00004100 ! Pdf neuron of abdominal neuromere (Drosophila) [Term] id: FBbt:00100185 name: pupal LN period neuron (Drosophila) namespace: fly_anatomy.ontology def: "Laterally located period (FBgn0003068) expressing neuron of the pupal brain." [FlyBase:FBrf0098279] is_a: FBbt:00100165 ! pupal pacemaker neuron (Drosophila) [Term] id: FBbt:00100186 name: pupal DN period neuron (Drosophila) namespace: fly_anatomy.ontology def: "A Per (FBgn0003068) expressing neuron that is located in a dorsoanterior cluster in the pupal brain." [FlyBase:FBrf0098279] is_a: FBbt:00100165 ! pupal pacemaker neuron (Drosophila) relationship: part_of UBERON:0003143 ! pupa [Term] id: FBbt:00100187 name: pupal DN1 period neuron (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100186 ! pupal DN period neuron (Drosophila) [Term] id: FBbt:00100188 name: pupal DN2 period neuron (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100186 ! pupal DN period neuron (Drosophila) [Term] id: FBbt:00100189 name: pupal DN3 period neuron (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00100186 ! pupal DN period neuron (Drosophila) [Term] id: FBbt:00100190 name: medial triple row bristle mechanosensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a medial triple row bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100150 ! medial triple row bristle (Drosophila) [Term] id: FBbt:00100191 name: chemosensory dorsal double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Multiply innervated, recurved bristle of the dorsal double row involved in chemosensation. This bristle also shows a conspicuous terminal pore." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: Palka et al., (1979) show that of the five dendrites innervating the wing margin chemosensory bristles, one contains a microtubular body, suggesting it to be a mechanosensory neuron. That this bristle is chemosensory in nature is based on the presence of the terminal pore and multiple innervation with dendrites extending to the pore (Palka et al., 1979). is_a: FBbt:00005178 ! taste bristle (Drosophila) is_a: FBbt:00100151 ! dorsal double row bristle (Drosophila) [Term] id: FBbt:00100192 name: mechanosensory dorsal double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Slender, singly-innervated mechanosensory bristle of the dorsal double row." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] comment: That this bristle is mechanosensory is primarily based on the presence of a characteristic microtubular body present in the single innervating neuron (Palka et al., 1979). is_a: FBbt:00005181 ! mechanosensory chaeta (Drosophila) is_a: FBbt:00100151 ! dorsal double row bristle (Drosophila) [Term] id: FBbt:00100193 name: chemosensory neuron of dorsal double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Chemosensory neuron that is part of a bristle of the dorsal double row." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005922 ! chemosensory neuron (Drosophila) relationship: part_of FBbt:00100191 ! chemosensory dorsal double row bristle (Drosophila) [Term] id: FBbt:00100194 name: mechanosensory neuron of chemosensory dorsal double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Neuron involved in mechanosensation that is part of a dorsal double row bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100191 ! chemosensory dorsal double row bristle (Drosophila) [Term] id: FBbt:00100195 name: neuron of mechanosensory dorsal double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron that innervates a mechanosensory dorsal double row bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00100192 ! mechanosensory dorsal double row bristle (Drosophila) [Term] id: FBbt:00100196 name: mechanosensory neuron of chemosensory ventral double row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Neuron involved in mechanosensation that is a part of the ventral double row chemosensory bristles." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005922 ! chemosensory neuron (Drosophila) relationship: part_of FBbt:00100108 ! chemosensory ventral double row bristle (Drosophila) [Term] id: FBbt:00100197 name: mechanosensory neuron of chemosensory ventral triple row bristle (Drosophila) namespace: fly_anatomy.ontology def: "Mechanosensory neuron innervating a chemosensory ventral triple row bristle." [FlyBase:FBrf0032909, FlyBase:FBrf0049554] is_a: FBbt:00005174 ! eo neuron (Drosophila) is_a: FBbt:00005919 ! mechanosensory neuron (Drosophila) relationship: part_of FBbt:00004335 ! chemosensory ventral triple row bristle (Drosophila) [Term] id: FBbt:00100198 name: larval LNd neuron (Drosophila) namespace: fly_anatomy.ontology def: "LNd neuron of the larva." [FlyBase:FBrf0195358] is_a: FBbt:00001913 ! larval LN period neuron (Drosophila) [Term] id: FBbt:00100199 name: adult period glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Period (FBgn0003068) expressing glial cell." [FlyBase:FBrf0056576] synonym: "period glial cell" RELATED [] is_a: FBbt:00100497 ! adult glial cell (Drosophila) [Term] id: FBbt:00100200 name: cortex region (Drosophila) namespace: fly_anatomy.ontology def: "A subdivision of the CNS cortex on the basis of underlying neuropil structure." [FBC:DOS] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "cell body layer" EXACT [FBC:BrainName] synonym: "cell body rind" EXACT [FBC:BrainName] synonym: "rind" EXACT [FBC:BrainName] is_a: UBERON:0005162 ! multi-cell-component structure relationship: part_of FBbt:00007114 ! cortex of the central nervous system (Drosophila) disjoint_from: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) disjoint_from: FBbt:00040007 ! synaptic neuropil domain (Drosophila) [Term] id: FBbt:00100201 name: lateral cell body region (Drosophila) namespace: fly_anatomy.ontology def: "Region of cortex between the central brain and the antennal lobes." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "LCBR" EXACT [FBC:BrainName] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100202 name: cortex of superior lateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the superior lateral protocerebrum." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "SLP cortex" EXACT [FBC:BrainName] synonym: "superior lateral protocerebrum cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100203 name: cortex of posterior lateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the posterior lateral protocerebrum." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "PLP " EXACT [] synonym: "posterior lateral protocerebrum cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100204 name: cortex of superior medial protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the superior medial protocerebrum." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "SMP Cortex" EXACT [FBC:BrainName] synonym: "superior medial protocerebrum cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100205 name: cortex of medulla (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001937 def: "Region of the adult brain cortex that overlies the medulla." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "ME cortex" EXACT [FBC:BrainName] synonym: "medulla cell body rind" EXACT [] synonym: "medulla cortex" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00001935 ! medulla anlage (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100206 name: cortex of lamina (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00001941 def: "Region of the adult brain cortex that overlies the lamina." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "LA cortex" EXACT [FBC:BrainName] synonym: "lamina cell body rind" EXACT [] synonym: "lamina cortex" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: develops_from FBbt:00001939 ! lamina anlage (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100207 name: cortex of lobula (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the lobula." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "LO cortex" EXACT [FBC:BrainName] synonym: "lobula cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100208 name: cortex of lobula plate (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the lobula plate." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "LOP cortex" EXACT [FBC:BrainName] synonym: "lobula plate cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100209 name: cortex of anterior ventrolateral protocerebrum (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the anterior ventrolateral protocerebrum." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "AVLP cortex" EXACT [FBC:BrainName] synonym: "anterior ventrolateral protocerebrum cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100210 name: cortex of subesophageal ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the subesophageal ganglion." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "SOG cortex" EXACT [FBC:BrainName] synonym: "cortex of suboesophageal ganglion" EXACT [] synonym: "subesophageal ganglion cell body rind" EXACT [] synonym: "suboesophageal ganglion cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100211 name: cortex of antennal lobe (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the antennal lobe." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "AL cortex" EXACT [FBC:BrainName] synonym: "antennal lobe cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100212 name: cortex of posterior slope (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the posterior slope." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "posterior slope cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100213 name: cortex of inferior neuropils (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the inferior neuropils." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "INP cortex" EXACT [FBC:BrainName] synonym: "inferior neuropils cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100214 name: dopaminergic PAM neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dopaminergic neuron whose cell body is located in a cluster of approximately 100 cell bodies in the cortex of the anterior inferior medial protocerebrum. At least some members of this group project to the medial tip of, and areas posterior to, the mushroom body medial lobe." [FlyBase:FBrf0208427] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. Mao and Davis (2009) use a heat shock-induced flip-out system to visualize the projection pattern of one or a few GFP-positive clones. synonym: "PAM" EXACT [FlyBase:FBrf0208427] synonym: "PAM cluster neuron" EXACT [] synonym: "TH-positive anteriomedial cluster neuron" EXACT [] synonym: "protocerebral anteriomedial dopaminergic cluster neuron" EXACT [] synonym: "protocerebral anterior medial dopaminergic cluster neuron" RELATED [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100215 name: dopaminergic PAL neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dopaminergic neuron whose cell body is located in a cluster of approximately 5 cell bodies in the cortex located lateral to the dorsal portion of the vertical lobes in the middle of the superior lateral protocerebrum." [FlyBase:FBrf0208427] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. synonym: "PAL" EXACT [FlyBase:FBrf0208427] synonym: "PAL cluster neuron" EXACT [] synonym: "TH-positive anteriolateral cluster neuron" RELATED [] synonym: "protocerebral anteriolateral dopaminergic cluster neuron" RELATED [] synonym: "protocerebral anterior lateral dopaminergic cluster neuron" RELATED [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100216 name: dopaminergic PPM1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Dopaminergic neuron whose cell body is located in a small cluster along the dorsoventral midline of the posterior superior medial protocerebrum." [FlyBase:FBrf0208427] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. They refer to the protocerebral posteriomedial dopaminergic neuron 1 as a cluster. synonym: "PPM1" EXACT [FlyBase:FBrf0208427] synonym: "PPM1 cluster neuron" EXACT [] synonym: "TH-positive posterior medial cluster 1 neuron" EXACT [] synonym: "protocerebral posteriomedial dopaminergic neuron 1" EXACT [] synonym: "protocerebral posterior medial dopaminergic neuron 1" EXACT [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100217 name: dopaminergic PPM2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dopaminergic neuron whose cell body is located in a cluster of approximately 8 cell bodies in the cortex of the posterior inferior medial protocerebrum." [FlyBase:FBrf0208427] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. synonym: "PPM2" EXACT [FlyBase:FBrf0208427] synonym: "PPM2 cluster neuron" EXACT [] synonym: "TH-positive posterior medial cluster neuron 2" EXACT [] synonym: "protocerebral posteriomedial dopaminergic cluster neuron 2" RELATED [] synonym: "protocerebral posterior medial dopaminergic cluster neuron 2" RELATED [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100218 name: dopaminergic PPM3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dopaminergic neuron whose cell body is located in a cluster of approximately 6-8 cell bodies in the cortex of the superior posterior slope." [FlyBase:FBrf0208427] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. synonym: "PPM3" EXACT [FlyBase:FBrf0208427] synonym: "PPM3 cluster neuron" EXACT [] synonym: "TH-positive posterior medial cluster neuron 3" EXACT [] synonym: "protocerebral posteriomedial dopaminergic cluster 3 neuron" EXACT [] synonym: "protocerebral posterior medial dopaminergic cluster neuron 3" EXACT [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100219 name: dopaminergic PPL1 neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dopaminergic neuron whose cell body is located in a cluster of approximately 12 cell bodies in the cortex of the posterior inferior lateral protocerebrum. Members of this group project to various parts of the mushroom body: the tip of the alpha lobe; the tip of the alpha' lobe; the upper portion of the alpha lobe segment 2; alpha lobe segment 1 and the lower part of segment 2; and the pedunculus and spur. Other members of this group arborize in areas other than the mushroom body: the edge of the medial portions of the medial lobes; broad areas surrounding the ipsilateral vertical lobes; areas posterior to the ipsilateral vertical lobes; and the entire span of the superior arch." [FlyBase:FBrf0208427] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. Mao and Davis (2009) use a heat shock-induced flip-out system to visualize the projection pattern of one or a few GFP-positive clones. synonym: "PPL1" EXACT [FlyBase:FBrf0208427] synonym: "PPL1 cluster neuron" EXACT [] synonym: "TH-positive posteriolateral cluster neuron 1" EXACT [] synonym: "protocerebral posteriolateral dopaminergic cluster neuron 1" EXACT [] synonym: "protocerebral posterior lateral cluster neuron 1" EXACT [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100220 name: dopaminergic PPL2ab neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dopaminergic neuron whose cell body is located in a cluster of approximately 6 cell bodies in the cortex of the posterior inferior lateral protocerebrum. Members of this group send processes to various parts of the brain: one group send processes to the calyx, the inferior portion of the lateral horn and broad areas in the middle superior medial protocerebrum; another group sends processes to the calyx, the entire lateral horn and broad areas of the middle superior protocerebrum; another subgroup innervates the lobula and broad protocerebral areas; and a final group innervates the posterior lateral protocerebrum." [FlyBase:FBrf0208427, PMID:1346506] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are dopaminergic. The cluster of neurons is so named because it appears to correspond to a double cluster (called PPL2ab) of TH-positive neurons in the blow fly (Nassel and Elekes, 1992), though Mao and Davis (2009) were unable to identify two subclusters. synonym: "PPL2ab" EXACT [FlyBase:FBrf0208427] synonym: "PPL2ab cluster neuron" EXACT [] synonym: "TH-positive posteriolateral dopaminergic cluster neuron 2ab" EXACT [] synonym: "protocerebral posteriolateral dopaminergic cluster neuron 2ab" EXACT [] synonym: "protocerebral posterior lateral dopaminergic cluster neuron 2ab" EXACT [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100221 name: dopaminergic PPL2c neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dopaminergic neuron whose cell body is located in a cluster of approximately 2 cell bodies in the cortex of the posterior lateral protocerebrum." [FlyBase:FBrf0208427] comment: Mao and Davis (2009) identify 8 protocerebral clusters coincidentally positive for TH-GAL4 activity and tyrosine hydroxylase immunoreactivity, implying these cells are related. synonym: "PPL2c" EXACT [FlyBase:FBrf0208427] synonym: "PPL2c cluster neuron" EXACT [] synonym: "TH-positive posteriolateral dopaminergic cluster neuron 2c" EXACT [] synonym: "protocerebral posteriolateral dopaminergic cluster neuron 2c" EXACT [] synonym: "protocerebral posterior lateral dopaminergic cluster neuron 2c" EXACT [] is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100222 name: mushroom body anterior paired lateral cell (Drosophila) namespace: fly_anatomy.ontology def: "A single, bilaterally paired mushroom body intrinsic neuron. Its large (~10um) cell body is located on the dorsal margin of the ventrolateral protocerebrum, in the lateral cell body region, between the anterior lateral superior clamp and the optic lobe. A single fiber projects to, and merges with, the middle antenno-cerebral tract at the lateral side of the calyx before entering and extensively arborizing over the calyx. These ramifications also project to the accessory calyx." [FlyBase:FBrf0205263] synonym: "MB-APL" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10446] xref: FlyBrain_NDB:10446 is_a: FBbt:00007484 ! mushroom body intrinsic neuron (Drosophila) [Term] id: FBbt:00100223 name: mushroom body anterior inferior medial cell (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, whose cell body is part of a cluster of approximately fifty mushroom body intrinsic neurons per brain hemisphere, that is located in front of the anterior inferior medial protocerebrum, anterior to the vertical and medial mushroom body lobes. The cell body fiber enters the medial lobe through the gap between the gamma and beta' lobes. Within the gamma lobe, neurite projection is limited to the middle segment between the tip and the base of the lobe, named as gamma4. In the beta', neurites arborize in the lateral part of the beta'a stratum (beta'a1) and the medial segment of beta'm and beta'p strata (beta'm2 and beta'p2). At the medial edge of the beta'm and beta'p strata, some of the fibers project to the contralateral lobe." [FlyBase:FBrf0205263] comment: Tanaka et al., (2008) refer to the MB-AIM as 'MB-APM' on one occasion, perhaps meaning 'anterior paired medial' to maintain consistency with MB-APL and MB-DPM. synonym: "MB-AIM" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10447] synonym: "MB-AMP" EXACT [FlyBase:FBrf0205263] xref: FlyBrain_NDB:10447 is_a: FBbt:00007484 ! mushroom body intrinsic neuron (Drosophila) [Term] id: FBbt:00100224 name: outer antenno-cerebral tract projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Projection neuron that fasciculates with the outer antenno-cerebral tract. This class includes various multiglomerular projection neurons that do not innervate the mushroom body and some uniglomerular projection neurons (with dendrites in VL1 and VP1) whose axons terminate in the mushroom body calyx and the lateral horn." [FlyBase:FBrf0051437, FlyBase:FBrf0205263] synonym: "lACT projection neuron" EXACT [] synonym: "lAPT projection neuron" EXACT [] synonym: "lateral APT projection neuron" EXACT [] synonym: "oACT projection neuron" EXACT [FlyBrain_NDB:10449] synonym: "outer ACT projection neuron" EXACT [] xref: FlyBrain_NDB:10449 is_a: FBbt:00007392 ! projection neuron (Drosophila) [Term] id: FBbt:00100225 name: inner-middle antenno-cerebral tract projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Projection neuron that fasciculates with the inner-medial antenno-cerebral tract." [FlyBase:FBrf0051437, FlyBase:FBrf0205263] comment: Via GAL4 studies, Tanaka et al., (2008) identify two m-mlAPT projection neurons, but suggests there could be more. synonym: "imACT projection neuron" EXACT [FlyBrain_NDB:10450] synonym: "inner-middle ACT projection neuron" EXACT [] synonym: "m-mlAPT projection neuron" EXACT [FBC:BrainName] synonym: "medial-mediolateral antenno-protocerebral tract projection neuron" EXACT [FBC:BrainName] synonym: "mmlAPT projection neuron" EXACT [FBC:BrainName] xref: FlyBrain_NDB:10450 is_a: FBbt:00007392 ! projection neuron (Drosophila) [Term] id: FBbt:00100226 name: mushroom body calyx arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body is located at the posterior area of the lateral cell body region between the posteriorlateral protocerebrum and the optic lobe. There is only one of these per hemisphere. It projects dorsally towards the lateral horn before branching and extensively arborizing in the ventral part of the lateral horn, then turning medially and terminating in the calyx." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-C1" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10451] xref: FlyBrain_NDB:10451 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100227 name: mushroom body extrinsic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Neuron that innervates the mushroom body and other neuropils." [FBC:SPR] is_a: FBbt:00003660 ! extrinsic neuron (Drosophila) [Term] id: FBbt:00100228 name: mushroom body calyx arborizing neuron 2 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron whose cell body is located on the posterior superior medial protocerebrum close to the pars intercerebralis. There are 3 of these per hemisphere. Their cell bodies form a cluster. The cell body fiber runs ventrally and bifurcates near the protocerebral bridge to form a laterodorsal and a lateroventral projection. The dorsal projection arborizes in the superior and inferior neuropils, with some branches entering the accessory calyx of the mushroom body. Some of these fibers connect the accessory calyx and the ventral peripheral zone of the main calyx. The ventral projection forms extensive arborization in the superior and inferior neuropils, and further projects to the posteriorlateral protocerebrum." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Not entirely clear that all 3 have the same innervation patterns. Based on descriptions in Tanaka et al., (2008), all assumed here to innervate mushroom body calyx and accessory calyx. synonym: "MB-C2" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10452] xref: FlyBrain_NDB:10452 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100229 name: mushroom body medial lobe arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of five or six neurons per brain hemisphere, whose cell body is located in front of the inferior neuropils, anterior to the middle part of the medial lobe. A neurite projects dorsolaterally and forms arborizations further in the inferior neuropils and within the superior neuropils. Some of these branches extend ventromedially and arborize in the medial-most segments of the gamma lobe and the beta-s and beta'-a strata. Some of the fibers further project to the contralateral medial lobes." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-M1" EXACT [FlyBrain_NDB:10454] synonym: "MB-M1 neuron" EXACT [] xref: FlyBrain_NDB:10454 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100230 name: mushroom body medial lobe arborizing neuron 2 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of approximately ten neurons per brain hemisphere, whose cell body lies on the inferior neuropils above the anterior surface of the middle part of the gamma lobe. The cell body fiber runs dorsally on the anterior surface of the gamma lobe, with one branch innervating the middle part of the gamma lobe. Another branch further bifurcates on the dorsal surface of the medial lobe. One of these branches terminates in the inferior neuropils behind the medial lobe, whilst the other turns medially through the border between the gamma and beta' lobes and enters the opposite hemisphere. The fibers from the opposite hemisphere run horizontally, enter the medial lobe through border between the gamma and beta' lobes and forms arborization in the middle part of the gamma lobe." [FlyBase:FBrf0205263] synonym: "MB-M2" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10455] xref: FlyBrain_NDB:10455 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100231 name: mushroom body medial lobe arborizing neuron 3 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of two to five neurons per brain hemisphere, whose cell body is found on the inferior neuropils near the junction of the lobes. The cell body fiber arborizes in the inferior and superior neuropils. The main fiber runs medially towards the tip of the medial lobe. Before entering the beta lobe, fibers branch off to project to the opposite hemisphere. The fibers entering the beta lobe arborize in the medial segment." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-M3" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10456] xref: FlyBrain_NDB:10456 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100232 name: mushroom body medial lobe arborizing neuron 4 (Drosophila) namespace: fly_anatomy.ontology def: "Neuron whose cell body is located on the superior neuropils of each hemisphere, anterior to the pars intercerebralis. The cell body fiber is sent ventrally towards the medial lobe. Arborizations occur in the inferior neuropils just dorsal to the beta' lobe. The main fiber enters the mushroom body between the gamma and beta' lobes and forms terminals in the medial segment of the beta' lobe. Fibers then further run medially to the opposite beta' lobe. There are two of these per hemisphere." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). The projection patterns of the MB-M4 neurons was determined by Tanaka et al., (2008) by comparing the expression patterns of the enhancer traps NP393 and NP3212. In contrast, the connectivity patterns of MB-M5 and MB-M6 neurons in the medial lobes and protocerebrum is not clear due to this overlap. synonym: "MB-M4" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10457] xref: FlyBrain_NDB:10457 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100233 name: mushroom body medial lobe arborizing neuron 5 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of approximately 5 neurons per brain hemisphere, whose cell body is located on the inferior neuropils, anterior to the vertical lobe. The cell body fiber travels medially and arborizes in the inferior neuropils above the middle part of the medial lobe. The main fibers then intermingle with the MB-M4 neurons and enter the medial lobe through the same pathway as MB-M4." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). The projection patterns of the MB-M4 neurons was determined by Tanaka et al., (2008) by comparing the expression patterns of the enhancer traps NP393 and NP3212. In contrast, the connectivity patterns of MB-M5 and MB-M6 neurons in the medial lobes and protocerebrum is not clear due to this overlap. synonym: "MB-M5" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10458] xref: FlyBrain_NDB:10458 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100234 name: mushroom body medial lobe arborizing neuron 6 (Drosophila) namespace: fly_anatomy.ontology def: "A bilateral neuron whose cell body is located on the superior neuropils, anterior to the pars intercerebralis. The cell body fiber travels ventrally towards the medial lobe, running along the anterior surface of the gamma lobe, turning medially at the bottom of the gamma lobe and forming a terminal in the most medial segment of the gamma lobe. The main fiber then enters the opposite gamma lobe, runs dorsolaterally through the border between the gamma and beta' lobes, arborizing in the inferior and superior neuropils." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). The projection patterns of the MB-M4 neurons was determined by Tanaka et al., (2008) by comparing the expression patterns of the enhancer traps NP393 and NP3212. In contrast, the connectivity patterns of MB-M5 and MB-M6 neurons in the medial lobes and protocerebrum is not clear due to this overlap. synonym: "MB-M6" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10459] xref: FlyBrain_NDB:10459 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100235 name: mushroom body medial lobe arborizing neuron 7 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of approximately two neurons per brain hemisphere, whose cell body is found in the inferior neuropils, anterior to the medial lobe. The cell body fibers project mediodorsally and bifurcate in the inferior neuropils. One branch arborizes here and the other runs ventromedially in the anterior surface of the medial lobe and innervates the gamma lobe." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). A precise number for the MB-M7 neurons was not possible by Tanaka et al., (2008) due to the enhancer trap they used (NP2297) also labelling the cell bodies of other neurons in close proximity. Also, because the arborization pattern of the MB-CP1, MB-M1 and MB-M7 intermingle, it was not possible to distinguish arborization areas for each population. synonym: "MB-M7" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10460] xref: FlyBrain_NDB:10460 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100236 name: mushroom body ventral lobe arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "A single neuron whose cell body is located on the superior neuropils lateral to the calyx of each brain hemisphere. The cell body fiber projects anterior-medially and forms branches in the superior neuropils posterior to the vertical lobes. One of these branches projects to the opposite hemisphere and others project to the vertical lobe and form extensive arborizations in the middle segment of both the alpha and alpha' lobes." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Tanaka et al., (2008) compare four enhancer traps to identify the MB-V1 neurons (MZ840, NP7187, NP7198 and NP7135). synonym: "MB-V1" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10461] xref: FlyBrain_NDB:10461 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100237 name: mushroom body ventral lobe arborizing neuron 2 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of three neurons per brain hemisphere, whose cell body is located in the posterior dorsal superior lateral protocerebrum, lateral to the calyx. The cell body fiber runs near the calyx and forms arborizations in the superior neuropils posterior to the tip of the alpha lobe, before entering and arborizing in the tip of the vertical lobe. The fibers further turn ventrally and terminate on the ventral part of the alpha lobe. Near the tip of the alpha' lobe, two fibers emerge: one of which projects posteriolaterally to the dorsal edge of the lateral horn, whereas the other projects medially to the tip of the contralateral vertical lobe." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-V2" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10462] xref: FlyBrain_NDB:10462 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100238 name: mushroom body ventral lobe arborizing neuron 3 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is one of approximately two neurons per brain hemisphere, whose cell body is located in the dorsal-most area of the subesophageal ganglion, ventromedial to the antennal lobe. The cell body fiber ascends through the median bundle to the level of the gamma lobe, and then projects towards the tip of the alpha lobe where it forms extensive arborization. On the way to the alpha lobe, several fibers branch off with some arborizing in the superior neuropils, and others arborize in this region before turning anteriorly and terminating in the anterior dorsal superior medial protocerebrum." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Tanaka et al., (2008) comment that there is a possibility of interconnectedness between MB-V3 and MB-V4 because thin fibers are occasionally found connecting the two neuronal projections. synonym: "MB-V3" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10463] xref: FlyBrain_NDB:10463 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100239 name: mushroom body ventral lobe arborizing neuron 4 (Drosophila) namespace: fly_anatomy.ontology def: "One of approximately two neurons per brain hemisphere whose cell body is located in the dorsal-most area of the subesophageal ganglion, ventromedial to the antennal lobe. The cell body fiber ascends through the median bundle to the level of the gamma lobe before making a steep lateral turn and forming extensive branches in the inferior neuropils. Some branches further arborize in the superior neuropils posterior to the vertical lobe. The main fiber further projects towards the vertical lobe and arborizes extensively in the alpha' lobe." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). Tanaka et al., (2008) comment that there is a small possibility of interconnectedness between MB-V3 and MB-V4 because thin fibers are occasionally found connecting the two neuronal projections. synonym: "MB-V4" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10464] xref: FlyBrain_NDB:10464 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100240 name: mushroom body calyx-pedunculus arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "One of approximately two neurons per brain hemisphere whose cell body is located on the posteriorlateral protocerebrum, ventrolateral to the calyx. The cell body fiber projects to and arborizes with the pedunculus where it bifurcates, with one branch turning posteriorly to terminate in the calyx. The other branch projects anteriorly through the pedunculus, turns medially and runs below the medial lobe. The fiber then turns dorsally, enters the medial lobe and bifurcates in the gamma lobe. One of these fibers turns medially to the opposite medial lobe, whilst the other turns dorsolaterally and terminates in the inferior neuropils, posterior to the medial lobe." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-C1" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100241 name: mushroom body medial-vertical lobe arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron whose cell body is located in the inferior neuropils, ventrolateral to the calyx of each brain hemisphere. The cell body fiber projects towards the anterior of the inferior neuropils. On the way there it bifurcates with one branch turning ventrally and terminating in the ventral complex. The second branch further branches in the inferior neuropil close to the beta lobe. One of these branches runs medially to the opposite hemisphere. Another turns ventrolaterally and arborizes in the basal segments of the gamma lobe and the alpha lobe. The final branch arborizes in the anterior region of the inferior neuropil." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-MV1" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10466] xref: FlyBrain_NDB:10466 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100242 name: mushroom body medial-vertical lobe arborizing neuron 2 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron whose cell body is located in front of the ventral complex, ventral to the junction of the lobes in each brain hemisphere. The cell body fiber runs dorsomedially to the opposite hemisphere. The fiber from the opposite hemisphere runs laterally and bifurcates behind the tip of the beta' lobe. One of the fibers runs ventrally and enters the medial-most part of the beta lobe where it arborizes through the tip of the beta-p lobe to the lateral part of the beta lobe segment. The other fiber runs dorsolaterally towards the tip region of the vertical lobe and terminates in the superior neuropils. On the way, the fiber bifurcates and one of the branches terminates in the tip of the alpha' lobe." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-MV2" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10467] xref: FlyBrain_NDB:10467 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100243 name: mushroom body pedunculus-medial lobe arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron whose cell body is located on the inferior neuropils, lateral to the calyx of each brain hemisphere. The cell body fiber runs anteriormedially and diverges above the ellipsoid body, with most of the branches arborizing in the anterior part of the inferior neuropils. One fiber turns dorsolaterally, runs in front of the anterior surface of the vertical lobe and terminates in the middle of the inferior neuropils. On the way, one fiber branches off and arborizes in the anterior and middle of the superior neuropils. Another fiber turns ventromedially and projects to the opposite hemisphere. A third fiber turns ventrolaterally, runs in front of the anterior surface of the gamma lobe and then below the gamma lobe, and arborizes in the spur of the gamma lobe and inner core of the pedunculus." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-MP1" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100244 name: mushroom body pedunculus-vertical lobe arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of at least two neurons, whose cell body is located on the inferior neuropils, near the junction of the mushroom body lobes of each brain hemisphere. The cell body fiber bifurcates near the vertical lobe. One of these fibers turns ventromedially to the tip of the medial lobe, whereas the other runs dorsally. The ventromedially directed branch innervates the medial lobe through the border between the gamma and beta' lobes. One branch runs medially to the opposite medial lobe whereas the other runs laterally to the basal segments of the alpha lobe and the inner core of the pedunculus. From the alpha lobe, one branch runs dorsally, turns dorsolaterally behind the alpha lobe and terminates in the posterior of the superior neuropils where it arborizes and further spreads laterally to the anterior dorsal superior lateral protocerebrum and the inferior neuropils." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008).The exact number of MB-VP1 neurons could not be exactly determined by Tanaka et al., (2008) because the enhancer trap they use labels other close cell bodies. synonym: "MB-VP1" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100245 name: mushroom body pedunculus-medial lobe and vertical lobe arborizing neuron 1 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron, which is part of a cluster of at least seven neurons, whose cell body is located on the inferior neuropils, near the junction of the mushroom body lobes of each brain hemisphere. The cell body fiber bifurcates in front of the vertical lobes. One of these branches turns ventromedially to the tip of the medial lobe, whereas the other runs dorsally. The first branch innervates the medial lobe through the border between the gamma and beta' lobes and bifurcates both medially and laterally at the border between the beta and beta' lobes. One bundle of fibers runs medially to the opposite lobe, whereas the other runs laterally to the basal segments of the beta and alpha lobe as well as the core of the pedunculus. The second of the initial branches diverges in the superior neuropils near the tip of the vertical lobe. One branch turns laterally, runs through the anterior side of the vertical lobe and terminates in the superior intermediate protocerebrum and superior medial protocerebrum. Another branch turns medially and terminates in the anterior dorsal superior medial protocerebrum. Some branches turn laterally, innervating the posterior dorsal superior medial protocerebrum and posterior dorsal superior lateral protocerebrum, and terminate in the anterior dorsal superior lateral protocerebrum." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-MVP1" EXACT [FlyBase:FBrf0205263, FlyBrain_NDB:10470] xref: FlyBrain_NDB:10470 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100246 name: mushroom body pedunculus-medial lobe and vertical lobe arborizing neuron 2 (Drosophila) namespace: fly_anatomy.ontology def: "A neuron whose cell body is located on the inferior neuropils in each brain hemisphere. The cell body fiber runs posteriorly and bifurcates laterally and medially. The lateral branch arborizes in the lateral-most spur area of the gamma lobe and the inner core of the pedunculus. The medial branch bifurcates in front of the middle segment of the medial lobe. One of the branches projects to the contralateral medial lobe. On the way to the opposite hemisphere, in the medial segment of the medial lobe, one fiber branches out, turns dorsolaterally and arborizes in the inferior neuropils. Some fibers extend further to the superior neuropils. The other branch turns dorsally, runs along the alpha lobe and terminates in the posterior tip of the alpha' lobe." [FlyBase:FBrf0205263] comment: Names are assigned according to the area of the mushroom body they arborize, as detailed in Tanaka et al., (2008). synonym: "MB-MVP2" EXACT [FlyBrain_NDB:10471] xref: FlyBrain_NDB:10471 is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) [Term] id: FBbt:00100247 name: mushroom body gamma neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mushroom body neuron that innervates the mushroom body vertical and medial lobes of larvae, but is pruned back during early pupal stages to innervate only the gamma lobe (Awasaki and Ito, 2004; Awasaki et al., 2006). The gamma neurons are the first born of the Kenyon cells, born before the alpha' and beta' neurons. In the pedunculus, the gamma axons occupy the periphery, with the alpha/beta neurons occupying the core stratum and the alpha'/beta' neurons in the intermediate stratum." [FlyBase:FBrf0174492, FlyBase:FBrf0192438, FlyBase:FBrf0205263] synonym: "gamma Kenyon cell" EXACT [] synonym: "gamma neuron" EXACT [] is_a: FBbt:00003686 ! Kenyon cell (Drosophila) [Term] id: FBbt:00100248 name: mushroom body alpha/beta neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mushroom body neuron that bifurcates at the anterior end of the pedunculus and projects into the alpha and beta lobes of the mushroom body. The alpha/beta neurons are the last born of the Kenyon cells, born during the pupal stage. In the pedunculus, the alpha/beta neurons occupy the core stratum with the gamma axons at the periphery and the alpha'/beta' neurons in the intermediate stratum." [FlyBase:FBrf0205263] synonym: "alpha/beta Kenyon cell" EXACT [] is_a: FBbt:00003686 ! Kenyon cell (Drosophila) [Term] id: FBbt:00100249 name: mushroom body alpha'/beta' neuron (Drosophila) namespace: fly_anatomy.ontology def: "Mushroom body neuron that bifurcates at the anterior end of the pedunculus, projecting into the mushroom body alpha'-lobe and beta'-lobe. The alpha'/beta' neurons are the second born of the Kenyon cells, born during the mid-larval stage before the alpha & beta neurons, but after the gamma neurons. In the pedunculus, the alpha' & beta' neurons occupy the intermediate stratum between the gamma axons at the periphery and the alpha/beta neurons at the core." [FlyBase:FBrf0205263] synonym: "mushroom body alpha'/beta' Kenyon cell" EXACT [] synonym: "mushroom body alpha-prime/beta-prime Kenyon cell" EXACT [] synonym: "mushroom body alpha-prime/beta-prime neuron" EXACT [] is_a: FBbt:00003686 ! Kenyon cell (Drosophila) [Term] id: FBbt:00100250 name: mushroom body alpha'/beta' anterior neuron (Drosophila) namespace: fly_anatomy.ontology def: "A subgroup of the mushroom body alpha'/beta' neurons that mainly innervates the anterior stratum of the alpha' and beta' lobes." [FlyBase:FBrf0205263] comment: Comparison of the expression patterns of the enhancer traps NP65, NP1131, NP6522 and NP7427 prompted the classification of three subpopulations (anterior, middle and posterior) of alpha'/beta' neurons by Tanaka et al., (2008), according to their terminal positions. Comparisons using these enhancer trap lines suggests that the neurons terminating in the anterior of the alpha' lobe are the same subclass as those terminating in the anterior of the beta' lobe. synonym: "alpha'/beta'a" EXACT [FlyBase:FBrf0205263] synonym: "alpha'a" EXACT [FlyBase:FBrf0205263] synonym: "beta'a" EXACT [FlyBase:FBrf0205263] synonym: "mushroom body alpha'/beta' anterior Kenyon cell" RELATED [FlyBase:FBrf0205263] synonym: "mushroom body alpha-prime/beta-prime anterior neuron" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00100249 ! mushroom body alpha'/beta' neuron (Drosophila) [Term] id: FBbt:00100251 name: mushroom body beta'' lobe (Drosophila) namespace: fly_anatomy.ontology def: "A narrow division lying between the gamma and beta' lobes. Axons innervating the beta'' lobe have axons innervating the alpha' lobe front surface." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] comment: Via Golgi impregnation and immunostaining, Strausfeld et al., (2003) identifies this highly taurine-immunopositive, aspartate-immunonegative band. However, Tanaka et al., (2008), using an enhancer trap screen, suggest that the neurons composing the alpha''/beta'' lobe should be regarded as a subpopulation of the alpha'/beta' anterior neurons. is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005408 ! mushroom body medial lobe (Drosophila) [Term] id: FBbt:00100252 name: mushroom body alpha'' lobe (Drosophila) namespace: fly_anatomy.ontology def: "A subregion of the alpha' lobe occupied by the vertical lobe projecting branches of the neurons composing the mushroom body beta'' lobe." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] comment: Via Golgi impregnation and immunostaining, Strausfeld et al., (2003) identifies this highly taurine-immunopositive, aspartate-immunonegative band. However, Tanaka et al., (2008), using an enhancer trap screen, suggest that the neurons composing the alpha''/beta'' lobe should be regarded as a subpopulation of the alpha'/beta' anterior neurons. synonym: "alpha''" EXACT [] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00005407 ! mushroom body vertical lobe (Drosophila) [Term] id: FBbt:00100253 name: mushroom body alpha'/beta' middle neuron (Drosophila) namespace: fly_anatomy.ontology def: "A subgroup of the mushroom body alpha'/beta' neurons that mainly innervates the middle stratum of the alpha' and beta' lobes." [FlyBase:FBrf0205263] comment: Labelling pattern comparison of the enhancer traps NP65, NP1131, NP6522 and NP7427 prompted the classification of three subpopulations (anterior, middle and posterior) of alpha'/beta' neurons by Tanaka et al., (2008), according to their terminal positions. Comparisons using these enhancer trap lines suggests that the neurons terminating in the middle of the alpha' lobe are the same subclass as those terminating in the middle of the beta' lobe. synonym: "alpha'/beta'm" EXACT [FlyBase:FBrf0205263] synonym: "alpha'm" EXACT [FlyBase:FBrf0205263] synonym: "beta'm" EXACT [FlyBase:FBrf0205263] synonym: "mushroom body alpha-prime/beta-prime middle neuron" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00100249 ! mushroom body alpha'/beta' neuron (Drosophila) [Term] id: FBbt:00100254 name: mushroom body alpha'/beta' posterior neuron (Drosophila) namespace: fly_anatomy.ontology def: "A subgroup of the mushroom body alpha'/beta' neurons that mainly innervates the posterior stratum of the alpha' and beta' lobes." [FlyBase:FBrf0205263] comment: Labelling pattern comparison of the enhancer traps NP65, NP1131, NP6522 and NP7427 prompted the classification of three subpopulations (anterior, middle and posterior) of alpha'/beta' neurons by Tanaka et al., (2008), according to their terminal positions. Comparisons using these enhancer trap lines suggests that the neurons terminating in the posterior of the alpha' lobe are the same subclass as those terminating in the posterior of the beta' lobe. synonym: "alpha'/beta'p" EXACT [FlyBase:FBrf0205263] synonym: "alpha'p" EXACT [FlyBase:FBrf0205263] synonym: "beta'p" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00100249 ! mushroom body alpha'/beta' neuron (Drosophila) [Term] id: FBbt:00100255 name: mushroom body stratum namespace: fly_anatomy.ontology def: "Subdivision of mushroom body lobe along the longitudinal axis." [FlyBase:FBrf0205263] is_obsolete: true [Term] id: FBbt:00100256 name: mushroom body alpha lobe posterior stratum (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most stratum of the mushroom body alpha lobe." [FlyBase:FBrf0158893, FlyBase:FBrf0201372, FlyBase:FBrf0205263] synonym: "alpha-p" EXACT [FlyBase:FBrf0205263] synonym: "alphap" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110004 ! mushroom body alpha lobe stratum (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00100257 name: mushroom body alpha lobe surface stratum (Drosophila) namespace: fly_anatomy.ontology def: "Surface stratum of the mushroom body alpha lobe." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] synonym: "alpha-s" EXACT [FlyBase:FBrf0205263] synonym: "alphas" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110004 ! mushroom body alpha lobe stratum (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00100258 name: mushroom body alpha lobe core stratum (Drosophila) namespace: fly_anatomy.ontology def: "Inner-most stratum of the mushroom body alpha lobe." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] synonym: "alpha-c" EXACT [FlyBase:FBrf0205263] synonym: "alphac" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110004 ! mushroom body alpha lobe stratum (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00100259 name: mushroom body alpha lobe inner core stratum (Drosophila) namespace: fly_anatomy.ontology def: "Inner-most section of the alpha lobe core stratum." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] comment: Tanaka et al., (2008) describes subdivision of the mushroom body alpha lobe core stratum based on differential labelling by enhancer traps NP6024 and NP7175. synonym: "alpha-c(i)" EXACT [FlyBase:FBrf0205263] synonym: "alphac(i)" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110004 ! mushroom body alpha lobe stratum (Drosophila) relationship: part_of FBbt:00100258 ! mushroom body alpha lobe core stratum (Drosophila) [Term] id: FBbt:00100260 name: mushroom body alpha lobe outer core stratum (Drosophila) namespace: fly_anatomy.ontology def: "Outer-most section of the alpha lobe core stratum." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] comment: Tanaka et al., (2008) describes subdivision of the mushroom body alpha lobe core stratum based on differential labelling by enhancer traps NP6024 and NP7175. synonym: "alpha-c(o)" EXACT [FlyBase:FBrf0205263] synonym: "alphac(o)" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110004 ! mushroom body alpha lobe stratum (Drosophila) relationship: part_of FBbt:00100258 ! mushroom body alpha lobe core stratum (Drosophila) [Term] id: FBbt:00100261 name: mushroom body beta lobe posterior stratum (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most stratum of the mushroom body beta lobe." [FlyBase:FBrf0158893, FlyBase:FBrf0201372, FlyBase:FBrf0205263] synonym: "beta-p" EXACT [FlyBase:FBrf0205263] synonym: "betap" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110005 ! mushroom body beta lobe stratum (Drosophila) relationship: part_of FBbt:00003693 ! mushroom body beta-lobe (Drosophila) [Term] id: FBbt:00100262 name: mushroom body beta lobe surface stratum (Drosophila) namespace: fly_anatomy.ontology def: "Surface stratum of the mushroom body beta lobe." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] synonym: "beta-s" EXACT [FlyBase:FBrf0205263] synonym: "betas" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110005 ! mushroom body beta lobe stratum (Drosophila) relationship: part_of FBbt:00003693 ! mushroom body beta-lobe (Drosophila) [Term] id: FBbt:00100263 name: mushroom body beta lobe core stratum (Drosophila) namespace: fly_anatomy.ontology def: "Inner-most stratum of the mushroom body beta lobe." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] synonym: "beta-c" EXACT [FlyBase:FBrf0205263] synonym: "betac" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110005 ! mushroom body beta lobe stratum (Drosophila) relationship: part_of FBbt:00003693 ! mushroom body beta-lobe (Drosophila) [Term] id: FBbt:00100264 name: mushroom body beta lobe inner core stratum (Drosophila) namespace: fly_anatomy.ontology def: "Inner-most section of the mushroom body beta lobe core stratum." [FlyBase:FBrf0205263] comment: Tanaka et al., (2008) describes subdivision of the mushroom body beta lobe core stratum based on differential labelling by enhancer traps NP6024 and NP7175. synonym: "beta-c(i)" EXACT [FlyBase:FBrf0205263] synonym: "betac(i)" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110005 ! mushroom body beta lobe stratum (Drosophila) relationship: part_of FBbt:00100263 ! mushroom body beta lobe core stratum (Drosophila) [Term] id: FBbt:00100265 name: mushroom body beta lobe outer core stratum (Drosophila) namespace: fly_anatomy.ontology def: "Outer-most section of the mushroom body beta lobe core stratum." [FlyBase:FBrf0162233, FlyBase:FBrf0205263] comment: Tanaka et al., (2008) describes subdivision of the mushroom body beta lobe core stratum based on differential labelling by enhancer traps NP6024 and NP7175. synonym: "beta-c(o)" EXACT [FlyBase:FBrf0205263] synonym: "betac(o)" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110005 ! mushroom body beta lobe stratum (Drosophila) relationship: part_of FBbt:00100263 ! mushroom body beta lobe core stratum (Drosophila) [Term] id: FBbt:00100266 name: mushroom body alpha' anterior stratum (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most stratum of the mushroom body alpha' lobe." [FlyBase:FBrf0205263] synonym: "alpha'-a" EXACT [FlyBase:FBrf0205263] synonym: "alpha'a" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110006 ! mushroom body alpha' lobe stratum (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00100267 name: mushroom body alpha' middle stratum (Drosophila) namespace: fly_anatomy.ontology def: "Middle-most stratum of the mushroom body alpha' lobe." [FlyBase:FBrf0205263] synonym: "alpha'-m" EXACT [FlyBase:FBrf0205263] synonym: "alpha'm" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110006 ! mushroom body alpha' lobe stratum (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00100268 name: mushroom body alpha' posterior stratum (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most stratum of the mushroom body alpha' lobe." [FlyBase:FBrf0205263] synonym: "alpha'-p" EXACT [FlyBase:FBrf0205263] synonym: "alpha'p" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110006 ! mushroom body alpha' lobe stratum (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00100269 name: mushroom body beta' anterior stratum (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most stratum of the mushroom body beta' lobe." [FlyBase:FBrf0205263] synonym: "beta'-a" EXACT [FlyBase:FBrf0205263] synonym: "beta'a" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110008 ! mushroom body beta' lobe stratum (Drosophila) relationship: part_of FBbt:00003694 ! mushroom body beta'-lobe (Drosophila) [Term] id: FBbt:00100270 name: mushroom body beta' middle stratum (Drosophila) namespace: fly_anatomy.ontology def: "Middle-most stratum of the mushroom body beta' lobe." [FlyBase:FBrf0205263] synonym: "beta'-m" EXACT [FlyBase:FBrf0205263] synonym: "beta'm" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110008 ! mushroom body beta' lobe stratum (Drosophila) relationship: part_of FBbt:00003694 ! mushroom body beta'-lobe (Drosophila) [Term] id: FBbt:00100271 name: mushroom body beta' posterior stratum (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most stratum of the mushroom body beta' lobe." [FlyBase:FBrf0205263] synonym: "beta'-p" EXACT [FlyBase:FBrf0205263] synonym: "beta'p" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110008 ! mushroom body beta' lobe stratum (Drosophila) relationship: part_of FBbt:00003694 ! mushroom body beta'-lobe (Drosophila) [Term] id: FBbt:00100272 name: mushroom body lobe segment namespace: fly_anatomy.ontology def: "Subdivision of mushroom body perpendicular to the lobe axis whose boundaries correspond to the boundaries of terminal arborization of mushroom body extrinsic neurons." [FlyBase:FBrf0205263] is_obsolete: true [Term] id: FBbt:00100273 name: mushroom body gamma lobe segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal-most segment of the mushroom body gamma lobe." [FlyBase:FBrf0205263] synonym: "gamma-1" EXACT [FlyBase:FBrf0205263] synonym: "gamma1" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110002 ! mushroom body gamma lobe segment (Drosophila) relationship: part_of FBbt:00003695 ! mushroom body gamma-lobe (Drosophila) [Term] id: FBbt:00100274 name: mushroom body gamma lobe segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Second most proximal segment of the mushroom body gamma lobe." [FlyBase:FBrf0205263] synonym: "gamma-2" EXACT [FlyBase:FBrf0205263] synonym: "gamma2" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110002 ! mushroom body gamma lobe segment (Drosophila) relationship: part_of FBbt:00003695 ! mushroom body gamma-lobe (Drosophila) [Term] id: FBbt:00100275 name: mushroom body gamma lobe segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Central-most segment of the mushroom body gamma lobe." [FlyBase:FBrf0205263] synonym: "gamma-3" EXACT [FlyBase:FBrf0205263] synonym: "gamma3" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110002 ! mushroom body gamma lobe segment (Drosophila) relationship: part_of FBbt:00003695 ! mushroom body gamma-lobe (Drosophila) [Term] id: FBbt:00100276 name: mushroom body gamma lobe segment 4 (Drosophila) namespace: fly_anatomy.ontology def: "Second most distal segment of the mushroom body gamma lobe." [FlyBase:FBrf0205263] synonym: "gamma-4" EXACT [FlyBase:FBrf0205263] synonym: "gamma4" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110002 ! mushroom body gamma lobe segment (Drosophila) relationship: part_of FBbt:00003695 ! mushroom body gamma-lobe (Drosophila) [Term] id: FBbt:00100277 name: mushroom body gamma lobe segment 5 (Drosophila) namespace: fly_anatomy.ontology def: "Distal-most segment of the mushroom body gamma lobe." [FlyBase:FBrf0205263] synonym: "gamma-5" EXACT [FlyBase:FBrf0205263] synonym: "gamma5" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110002 ! mushroom body gamma lobe segment (Drosophila) relationship: part_of FBbt:00003695 ! mushroom body gamma-lobe (Drosophila) [Term] id: FBbt:00100278 name: mushroom body beta' lobe segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal-most segment of the mushroom body beta' lobe." [FlyBase:FBrf0205263] synonym: "beta'1" EXACT [FlyBase:FBrf0205263] synonym: "mushroom body beta' lobe shaft" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110009 ! mushroom body beta' lobe segment (Drosophila) relationship: part_of FBbt:00003694 ! mushroom body beta'-lobe (Drosophila) [Term] id: FBbt:00100279 name: mushroom body beta' lobe segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Distal-most segment of the mushroom body beta' lobe." [FlyBase:FBrf0205263] synonym: "beta'2" EXACT [FlyBase:FBrf0205263] synonym: "mushroom body beta' lobe tip" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110009 ! mushroom body beta' lobe segment (Drosophila) relationship: part_of FBbt:00003694 ! mushroom body beta'-lobe (Drosophila) [Term] id: FBbt:00100280 name: mushroom body beta lobe segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal-most segment of the mushroom body beta lobe." [FlyBase:FBrf0205263] synonym: "beta1" EXACT [FlyBase:FBrf0205263] synonym: "mushroom body beta lobe shaft" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110003 ! mushroom body beta lobe segment (Drosophila) relationship: part_of FBbt:00003693 ! mushroom body beta-lobe (Drosophila) [Term] id: FBbt:00100281 name: mushroom body beta lobe segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Distal-most segment of the mushroom body beta lobe." [FlyBase:FBrf0205263] synonym: "beta2" EXACT [FlyBase:FBrf0205263] synonym: "mushroom body beta lobe tip" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110003 ! mushroom body beta lobe segment (Drosophila) relationship: part_of FBbt:00003693 ! mushroom body beta-lobe (Drosophila) [Term] id: FBbt:00100282 name: mushroom body alpha' lobe segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal-most base segment of the mushroom body alpha' lobe." [FlyBase:FBrf0205263] synonym: "alpha lobe base" EXACT [FlyBase:FBrf0205263] synonym: "alpha'-1" EXACT [FlyBase:FBrf0205263] synonym: "alpha'1" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110001 ! mushroom body alpha' lobe segment (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00100283 name: mushroom body alpha' lobe segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Largest, central-most shaft segment of the mushroom body alpha' lobe." [FlyBase:FBrf0205263] synonym: "alpha' lobe shaft" EXACT [FlyBase:FBrf0205263] synonym: "alpha'-2" EXACT [FlyBase:FBrf0205263] synonym: "alpha'2" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110001 ! mushroom body alpha' lobe segment (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00100284 name: mushroom body alpha' lobe segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Distal-most tip segment of the mushroom body alpha' lobe." [FlyBase:FBrf0205263] synonym: "alpha' lobe tip" EXACT [FlyBase:FBrf0205263] synonym: "alpha'-3" EXACT [FlyBase:FBrf0205263] synonym: "alpha'3" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110001 ! mushroom body alpha' lobe segment (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00100285 name: mushroom body alpha lobe segment 1 (Drosophila) namespace: fly_anatomy.ontology def: "Proximal-most segment of the mushroom body alpha lobe." [FlyBase:FBrf0205263] synonym: "alpha lobe base" EXACT [FlyBase:FBrf0205263] synonym: "alpha-1" EXACT [FlyBase:FBrf0205263] synonym: "alpha1" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110000 ! mushroom body alpha lobe segment (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00100286 name: mushroom body alpha lobe segment 2 (Drosophila) namespace: fly_anatomy.ontology def: "Largest, central-most segment of the mushroom body alpha lobe." [FlyBase:FBrf0205263] synonym: "alpha lobe shaft" EXACT [FlyBase:FBrf0205263] synonym: "alpha-2" EXACT [FlyBase:FBrf0205263] synonym: "alpha2" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110000 ! mushroom body alpha lobe segment (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00100287 name: mushroom body alpha lobe segment 3 (Drosophila) namespace: fly_anatomy.ontology def: "Distal-most segment of the mushroom body alpha' lobe." [FlyBase:FBrf0205263] synonym: "alpha lobe tip" EXACT [FlyBase:FBrf0205263] synonym: "alpha-3" EXACT [FlyBase:FBrf0205263] synonym: "alpha3" EXACT [FlyBase:FBrf0205263] is_a: FBbt:00110000 ! mushroom body alpha lobe segment (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00100288 name: cortex of crepine (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the crepine." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "crepine cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100290 name: endocuticular specialization (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007288 ! integumentary specialisation (Drosophila) relationship: part_of UBERON:0003202 ! endocuticle [Term] id: FBbt:00100291 name: glutamatergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some glutamic acid (CHEBI:18237)." [FBC:auto_generated_definition] is_a: CL:0000540 ! neuron [Term] id: FBbt:00100292 name: chordotonal organ of leg (Drosophila) namespace: fly_anatomy.ontology def: "Chordotonal organ that is part of a leg." [FBC:SPR, FlyBase:FBrf0085956] synonym: "mechanosensory neuron of leg" RELATED [] synonym: "stretch receptor of leg" EXACT [FlyBase:FBrf0085956] is_a: FBbt:00004113 ! adult sense organ (Drosophila) is_a: UBERON:0001038 ! chordotonal organ relationship: part_of UBERON:0005895 ! insect leg [Term] id: FBbt:00100293 name: hair plate (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of short mechanosensory hairs usually situated near, and stimulated by, joints." [FlyBase:FBrf0056602, FlyBase:FBrf0085956] is_a: FBbt:00007316 ! sensory cluster (Drosophila) [Term] id: FBbt:00100294 name: hair plate of coxa (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate located on the coxal segment of the adult leg." [FlyBase:FBrf0031004, FlyBase:FBrf0056602] is_a: FBbt:00100293 ! hair plate (Drosophila) relationship: part_of FBbt:00004641 ! coxa (Drosophila) [Term] id: FBbt:00100295 name: hair plate of trochanter (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate located on the trochanter of the adult leg." [FlyBase:FBrf0031004, FlyBase:FBrf0056602] is_a: FBbt:00100293 ! hair plate (Drosophila) relationship: part_of FBbt:00004643 ! trochanter (Drosophila) [Term] id: FBbt:00100296 name: abdominal sensory neuron (Drosophila) namespace: fly_anatomy.ontology def: "A sensory neuron that is part of the abdomen." [FBC:SPR] synonym: "sensory neuron of abdomen" EXACT [FBC:SPR] is_a: CL:0000101 ! sensory neuron is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00000020 ! abdomen (Drosophila) [Term] id: FBbt:00100297 name: femoral sensillum campaniformium (Drosophila) namespace: fly_anatomy.ontology def: "Sensillum campaniformium located in the femur." [FBC:LSG, FBC:SPR] synonym: "campaniform sensilla of femur" EXACT [FBC:SPR] synonym: "femoral campaniform sensilla" EXACT [FBC:SPR] synonym: "sensillum campaniformium of femur" EXACT [FBC:SPR] is_a: FBbt:00004246 ! leg sensillum (Drosophila) is_a: FBbt:00005183 ! sensillum campaniformium (Drosophila) relationship: part_of FBbt:00004644 ! femur (Drosophila) [Term] id: FBbt:00100298 name: prothoracic leg hair plate (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate located on the prothoracic leg." [FBC:SPR] synonym: "prothoracic hair plate" RELATED [] is_a: FBbt:00100293 ! hair plate (Drosophila) relationship: part_of FBbt:00004663 ! prothoracic leg (Drosophila) [Term] id: FBbt:00100299 name: metathoracic leg hair plate (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate found on the adult metathoracic leg." [FBC:SPR] synonym: "metathoracic hair plate" EXACT [] is_a: FBbt:00100293 ! hair plate (Drosophila) relationship: part_of FBbt:00004707 ! metathoracic leg (Drosophila) [Term] id: FBbt:00100300 name: mesothoracic leg hair plate (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate located on the adult mesothoracic leg." [FBC:SPR] synonym: "Mesothoracic hair plate" RELATED [] is_a: FBbt:00100293 ! hair plate (Drosophila) relationship: part_of FBbt:00004685 ! mesothoracic leg (Drosophila) [Term] id: FBbt:00100301 name: hair plate of mesothoracic coxa (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate found on the coxa of the adult mesothoracic leg." [FBC:SPR] is_a: FBbt:00100294 ! hair plate of coxa (Drosophila) is_a: FBbt:00100300 ! mesothoracic leg hair plate (Drosophila) relationship: part_of FBbt:00004686 ! mesothoracic coxa (Drosophila) [Term] id: FBbt:00100302 name: hair plate of metathoracic coxa (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate found on the coxa of the adult metathoracic leg." [FBC:SPR] is_a: FBbt:00100294 ! hair plate of coxa (Drosophila) is_a: FBbt:00100299 ! metathoracic leg hair plate (Drosophila) relationship: part_of FBbt:00004708 ! metathoracic coxa (Drosophila) [Term] id: FBbt:00100303 name: hair plate of prothoracic coxa (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate found on the coxa of the adult prothoracic leg." [FBC:SPR] is_a: FBbt:00100294 ! hair plate of coxa (Drosophila) is_a: FBbt:00100298 ! prothoracic leg hair plate (Drosophila) relationship: part_of FBbt:00004664 ! prothoracic coxa (Drosophila) [Term] id: FBbt:00100304 name: hair plate of mesothoracic trochanter (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate found on the trochanter of the adult mesothoracic leg." [FBC:SPR] is_a: FBbt:00100295 ! hair plate of trochanter (Drosophila) is_a: FBbt:00100300 ! mesothoracic leg hair plate (Drosophila) relationship: part_of FBbt:00004688 ! mesothoracic trochanter (Drosophila) [Term] id: FBbt:00100305 name: hair plate of metathoracic trochanter (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate found on the trochanter of the adult metathoracic leg." [FBC:SPR] is_a: FBbt:00100295 ! hair plate of trochanter (Drosophila) is_a: FBbt:00100299 ! metathoracic leg hair plate (Drosophila) relationship: part_of FBbt:00004710 ! metathoracic trochanter (Drosophila) [Term] id: FBbt:00100306 name: hair plate of prothoracic trochanter (Drosophila) namespace: fly_anatomy.ontology def: "Hair plate found on the trochanter of the adult prothoracic leg." [FBC:SPR] is_a: FBbt:00100295 ! hair plate of trochanter (Drosophila) is_a: FBbt:00100298 ! prothoracic leg hair plate (Drosophila) relationship: part_of FBbt:00004666 ! prothoracic trochanter (Drosophila) [Term] id: FBbt:00100307 name: glial cell of adult antennal nerve (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell that is part of the adult antennal nerve." [FBC:SPR, FlyBase:FBrf0128516] is_a: FBbt:00001320 ! PNS glial cell (Drosophila) relationship: part_of FBbt:00006045 ! antennal nerve (Drosophila) [Term] id: FBbt:00100308 name: cortex of superior neuropils (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain that overlies the superior neuropils." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "superior neuropils cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100309 name: cortex of ventral complex (Drosophila) namespace: fly_anatomy.ontology def: "Region of the adult brain cortex that overlies the ventral complex." [FBC:BrainName] comment: BrainName may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. LH(A) for anterior to the Lateral Horn; SMP(M) for medial to the superior medial protocerebrum, etc. synonym: "VLNP cortex" EXACT [FBC:BrainName] synonym: "ventral complex cell body rind" EXACT [] is_a: FBbt:00100200 ! cortex region (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) [Term] id: FBbt:00100310 name: posterior signalling centre of anterior lymph gland pair (Drosophila) namespace: fly_anatomy.ontology def: "A cluster of (about 30) cells at the posterior of the anterior lymph gland pair in the third instar larva that serves as a niche for stem cells that are the precursors of plasmatocytes, crystal cells and lamellocytes." [FlyBase:FBrf0208762] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00001669 ! anterior lymph gland pair (Drosophila) [Term] id: FBbt:00100311 name: cortical zone of anterior lymph gland pair (Drosophila) namespace: fly_anatomy.ontology def: "Peripheral region of the anterior lymph gland pair, consisting of differentiated hemocytes." [FlyBase:FBrf0208762] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00001669 ! anterior lymph gland pair (Drosophila) [Term] id: FBbt:00100312 name: medullary zone of anterior lymph gland pair (Drosophila) namespace: fly_anatomy.ontology def: "Core region of the anterior lymph gland pair, consisting of undifferentiated hemocyte progenitors." [FlyBase:FBrf0208762] is_a: UBERON:0000479 ! tissue relationship: part_of FBbt:00001669 ! anterior lymph gland pair (Drosophila) [Term] id: FBbt:00100313 name: multicellular structure (Drosophila) namespace: fly_anatomy.ontology def: "Anatomical structure that has multiple cells as parts." [FBC:DOS] is_a: UBERON:0000061 ! anatomical structure disjoint_from: FBbt:00007002 ! cell (Drosophila) [Term] id: FBbt:00100314 name: duct (Drosophila) namespace: fly_anatomy.ontology is_a: UBERON:0003914 ! epithelial tube [Term] id: FBbt:00100317 name: gland (Drosophila) namespace: fly_anatomy.ontology def: "Any multicellular structure (FBbt:00100313) that functions in (some) secretion (GO:0046903)." [FBC:auto_generated_definition] is_a: FBbt:00100313 ! multicellular structure (Drosophila) [Term] id: FBbt:00100318 name: somatic cell (Drosophila) namespace: fly_anatomy.ontology is_a: FBbt:00007002 ! cell (Drosophila) [Term] id: FBbt:00100319 name: leading edge mixer cell (Drosophila) namespace: fly_anatomy.ontology def: "A leading edge cell that moves from the anterior compartment of one segment to the posterior compartment of the segment immediately anterior to it during dorsal closure. There is one of these per abdominal segment, initially located in the dorso-anterior corner of each anterior compartment at the dorsal-end of the groove that marks the segment boundary." [FlyBase:FBrf0211014] synonym: "MC" EXACT [FlyBase:FBrf0211014] synonym: "mixer cell" EXACT [FlyBase:FBrf0211014] is_a: FBbt:00005746 ! embryonic leading edge cell (Drosophila) [Term] id: FBbt:00100320 name: anterior intercalating leading edge cell (Drosophila) namespace: fly_anatomy.ontology def: "Leading edge cell that originates in the anterior compartment in the second row of the dorsal epidermis during dorsal closure and which intercalates into the leading edge adjacent to the compartment boundary at the same time as the mixer cell crosses the segment boundary." [FlyBase:FBrf0211014] synonym: "AI cell" EXACT [FlyBase:FBrf0211014] is_a: FBbt:00005746 ! embryonic leading edge cell (Drosophila) [Term] id: FBbt:00100321 name: posterior intercalating leading edge cell (Drosophila) namespace: fly_anatomy.ontology def: "Leading edge cell that originates in the posterior compartment in the second row of the dorsal epidermis during dorsal closure and which intercalates into the leading edge adjacent to the compartment boundary at the same time as the mixer cell crosses the segment boundary." [FlyBase:FBrf0211014] synonym: "PI cell" EXACT [FlyBase:FBrf0211014] is_a: FBbt:00005746 ! embryonic leading edge cell (Drosophila) [Term] id: FBbt:00100322 name: adult alimentary canal (Drosophila) namespace: fly_anatomy.ontology def: "The entire adult anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut." [FBC:DOS] subset: cur ! cur is_a: UBERON:0001555 ! digestive tract relationship: part_of FBbt:00003123 ! pupal/adult digestive system (Drosophila) [Term] id: FBbt:00100323 name: embryonic/larval alimentary canal (Drosophila) namespace: fly_anatomy.ontology def: "The entire embryonic/larval anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut." [FBC:DOS] is_a: UBERON:0001555 ! digestive tract relationship: part_of FBbt:00001842 ! embryonic/larval digestive system (Drosophila) [Term] id: FBbt:00100324 name: tarsal segment 1 namespace: fly_anatomy.ontology is_obsolete: true replaced_by: FBbt:00004648 ! metatarsus (Drosophila) comment: The first tarsal segment is more commonly known as the metatarsus or basitarsus. Please use metatarsus ; FBbt:00004648. [Term] id: FBbt:00100325 name: adult anal pad (Drosophila) namespace: fly_anatomy.ontology def: "Sclerotized 10th tergite plate flanking the adult anus (Ferris, 1950)." [FlyBase:FBrf0007734] synonym: "10th tergite" RELATED [FlyBase:FBrf0007734] is_a: FBbt:00005785 ! anal pad (Drosophila) [Term] id: FBbt:00100326 name: prothoracic dorsal Kolbchen dbd (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal Kolbchen of the embryonic/larval prothoracic (T1) segment. It is innervated by two neurons (Dambly-Chaudiere and Ghysen, 1986) and is located more dorsally in the segment than the dorsal-most Kolbchen of the meso- and metathoracic (T2-T3) segments." [FlyBase:FBrf0041814, FlyBase:FBrf0045359] subset: cur ! cur synonym: "dbd" RELATED [FlyBase:FBrf0041814] synonym: "dorsal black dot" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00002725 ! embryonic/larval prothoracic sensillum (Drosophila) is_a: FBbt:00005199 ! Kolbchen (Drosophila) relationship: part_of FBbt:00007299 ! embryonic/larval prothoracic dorsal sensory cluster (Drosophila) [Term] id: FBbt:00100327 name: labral nerve (Drosophila) namespace: fly_anatomy.ontology synonym: "LbrN" EXACT [] is_a: FBbt:00001964 ! supraesophageal nerve (Drosophila) [Term] id: FBbt:00100328 name: adult labral nerve (Drosophila) namespace: fly_anatomy.ontology def: "The adult labral nerve supplies the labrum. It enters the brain at the level of the tritocerebrum." [FBC:BrainName, FlyBase:FBrf0179479] synonym: "LN" EXACT [FlyBase:FBrf0179479] synonym: "LbrN" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00100327 ! labral nerve (Drosophila) [Term] id: FBbt:00100329 name: frontal nerve (Drosophila) namespace: fly_anatomy.ontology synonym: "FrN" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00100330 name: adult frontal nerve (Drosophila) namespace: fly_anatomy.ontology def: "The adult frontal nerve contains a variety of fibers, largely from interneurons, and connects the tritocerebrum and the frontal ganglion (an unpaired structure on the anterior side of the esophagus)." [FBC:BrainName] synonym: "FrN" RELATED BRAIN_NAME_ABV [FBC:BrainName] synonym: "frontal nerve" EXACT [] is_a: FBbt:00100329 ! frontal nerve (Drosophila) [Term] id: FBbt:00100331 name: recurrent nerve namespace: fly_anatomy.ontology is_obsolete: true synonym: "RcN" RELATED [] [Term] id: FBbt:00100332 name: adult recurrent nerve (Drosophila) namespace: fly_anatomy.ontology def: "The adult recurrent nerve runs from the frontal ganglion to the separation of the stomodeal and pharyngeal nerves (Rajashekhar and Singh, 1994). It contains fibers of the enteric nervous system." [FBC:BrainName, FlyBase:FBrf0080339] comment: Whilst Ito et al., (FBC:BrainName) appear to consider the adult recurrent nerve as extending from the frontal ganglion to the foregut, Rajashekhar and Singh (1994) consider the recurrent nerve to consist of the nerve tract extending from the frontal ganglion only to the point where the pharyngeal nerve and stomodeal nerve separate. We adopt the latter definition. synonym: "RcN" RELATED BRAIN_NAME_ABV [FBC:BrainName] synonym: "recurrent nerve" RELATED [] is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00100333 name: labial nerve (Drosophila) namespace: fly_anatomy.ontology synonym: "LbN" EXACT [] is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00100334 name: maxillary nerve (Drosophila) namespace: fly_anatomy.ontology synonym: "MxN" EXACT [] is_a: UBERON:0001021 ! nerve [Term] id: FBbt:00100335 name: mandibular nerve namespace: fly_anatomy.ontology is_obsolete: true synonym: "MnN" EXACT [] [Term] id: FBbt:00100337 name: anterior optic tract (Drosophila) namespace: fly_anatomy.ontology def: "Tract that emerges from the medial part of the lobula. One branch ends in the optic tubercle whilst the other makes a medial turn to terminate in the superior medial posterior ventrolateral protocerebrum." [FBC:BrainName, FlyBase:FBrf0039022] comment: Fischbach and Lyly-Hunerberg, (1983), subdivide the anterior optic tract (AOT) into four sub-bundles: S1-S4. S1 consists of 100-110 think axons surrounded by ~60 large diameter neurons that form the S2 bundle. These bundles together occupy the proximal part of the AOT close to the neuropil of the lateral protocerebrum. S3 forms the lateral ventral part of the AOT and is formed by ~430 axons of small diameter that project into the anterior optic foci. S4 is composed of approximately 660 relatively small fibers. synonym: "AOT" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00100338 name: pyriform fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Tract emerging from the superior-most lateral area of the superior medial protocerebrum and ending in between the superior lateral protocerebrum and lateral horn." [FBC:BrainName] synonym: "PYF" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00100339 name: anterior superior lateral protocerebrum fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Emerging from cells located in the lateral cell body region, the anterior superior lateral protocerebrum fascicle exhibits a J-shape and terminates in the boundary between the superior intermediate protocerebrum and the superior lateral protocerebrum just posterior to the optic tubercle." [FBC:BrainName] synonym: "aSLPF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "anterior SLP fascicle" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003626 ! supraesophageal ganglion (Drosophila) [Term] id: FBbt:00100340 name: horizontal ventrolateral protocerebral fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Emerging from cells located in the lateral cell body region, the horizontal ventrolateral protocerebral fascicle terminates in an area between the lateral accessory lobe, inferior clamp and epaulette. It contains fibers projecting towards the inferior and ventromedial neuropils." [FBC:BrainName] synonym: "hVLPF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "horizontal VLP fascicle" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100341 name: vertical ventrolateral protocerebral fascicle (Drosophila) namespace: fly_anatomy.ontology def: "The vertical ventrolateral protocerebral fascicle emerges from cells in the lateral cell body region and terminates in the superior lateral protocerebrum." [FBC:BrainName] synonym: "vVLPF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "vertical VLP fascicle" RELATED [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100342 name: median equatorial fascicle (Drosophila) namespace: fly_anatomy.ontology def: "This large fascicle emerges from cells in the medial posterior cortex region below the mushroom body calyx and branches out at the fan-shaped body." [FBC:BrainName] comment: BrainName changed the name of the median equatorial fascicle from protocerebral bridge-lateral protuberance tract because the fascicle contains many fibers not derived from the protocerebral bridge. synonym: "MEF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "protocerebral bridge - lateral protuberance tract" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100343 name: lateral equatorial fascicle (Drosophila) namespace: fly_anatomy.ontology def: "Running lateral to the median equatorial fascicle, this thinner tract emerges from the lateral posterior cortex region and ends in the inferior-most part of the inferior clamp." [FBC:BrainName] synonym: "LEF" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100344 name: posterior cerebro-cervical fascicle (Drosophila) namespace: fly_anatomy.ontology def: "The posterior cerebro-cervical fascicle derives from the superior lateral part of the cervical connective and terminates in the inferior fiber system." [FBC:BrainName] synonym: "pCCF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "posterior CCF" EXACT [] synonym: "posterior cerebrocervical fascicle" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100345 name: medial cerebro-cervical fascicle (Drosophila) namespace: fly_anatomy.ontology def: "The medial cerebro-cervical fascicle derives from the superior medial part of the cervical connective and ends in the medial part of the subesophageal ganglion." [FBC:BrainName] synonym: "mCCF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "medial CCF" EXACT [] synonym: "medial cerebrocervical fascicle" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100346 name: anterior cerebro-cervical fascicle (Drosophila) namespace: fly_anatomy.ontology def: "The anterior cerebro-cervical fascicle derives from the inferior medial part of the cervical connective and projects towards the saddle and the inferior ventrolateral protocerebrum and converges on the inferior fiber system." [FBC:BrainName] synonym: "aCCF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "anterior CCF" EXACT [] synonym: "anterior cerebrocervical fascicle" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100347 name: lateral cerebro-cervical fascicle (Drosophila) namespace: fly_anatomy.ontology def: "The lateral cerebro-cervical fascicle derives from the inferior lateral part of the cervical connective and projects towards the lateral surface of the saddle and inferior ventrolateral protocerebrum." [FBC:BrainName] synonym: "lCCF" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "lateral CCF" EXACT [] synonym: "lateral cerebrocervical fascicle" EXACT [] is_a: FBbt:00007426 ! ipsilateral tract (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100348 name: fiber system (Drosophila) namespace: fly_anatomy.ontology def: "Area of the brain where fascicles from various directions meet and merge. They are largely or completely devoid of synapses." [FBC:BrainName] synonym: "fibre system" EXACT [] is_a: UBERON:0005162 ! multi-cell-component structure relationship: part_of FBbt:00040004 ! tract neuropil (Drosophila) [Term] id: FBbt:00100349 name: superior fiber system (Drosophila) namespace: fly_anatomy.ontology def: "The superior fiber system is a prominent fiber system in the superior brain. It lies dorsolateral to the fan-shaped body and anterior to the superior part of the medial antennal lobe-protocerebral tract." [FBC:BrainName] synonym: "SFS" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "superior fibre system" EXACT [] is_a: FBbt:00100348 ! fiber system (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100350 name: inferior fiber system (Drosophila) namespace: fly_anatomy.ontology def: "The inferior fiber system is a large fiber system in the inferior brain, lying inferior-posterior to the antennal lobe." [FBC:BrainName] synonym: "IFS" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "inferior fibre system" EXACT [] is_a: FBbt:00100348 ! fiber system (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100351 name: superior antennal lobe commissure (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most of two commissures connecting the antennal lobes and running in front of the ellipsoid body." [FBC:BrainName] synonym: "inter-antennal lobe tract" EXACT [FBC:BrainName] synonym: "interantennal lobe tract" EXACT [] synonym: "sALC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "superior AL commissure" EXACT [] is_a: FBbt:00003979 ! antennal commissure (Drosophila) [Term] id: FBbt:00100352 name: inferior antennal lobe commissure (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most of two commissures connecting the antennal lobes and running in front of the ellipsoid body." [FBC:BrainName] synonym: "iALC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "inferior AL commissure" EXACT [] synonym: "inter-antennal lobe tract" EXACT [] synonym: "interantennal lobe tract" EXACT [] is_a: FBbt:00003979 ! antennal commissure (Drosophila) [Term] id: FBbt:00100354 name: superior ellipsoid commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure lying above the ellipsoid body connecting the superior medial protocerebrum, superior intermediate protocerebrum, superior clamp and inferior clamp." [FBC:BrainName] synonym: "SEC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "supra ellipsoid tract" RELATED [] synonym: "supra-ellipsoid tract" RELATED [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100355 name: posterior posteriolateral protocerebral commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure running above the esophagus and below the inferior bridge, connecting the middle levels of the posteriolateral protocerebrum." [FBC:BrainName] synonym: "pPLPC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "posterior PLP commissure" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100356 name: inferior VLP commissure (Drosophila) namespace: fly_anatomy.ontology def: "Commissure lying posterior and inferior to the `great commissure` (FBbt:00007080) and anterior to the `posterior optic commissure` (FBbt:00007427), and connects the inferior ventrolateral protocerebrum (FBbt:00045027) of both hemispheres." [FBC:BrainName] synonym: "IVLP commissure" EXACT [] synonym: "IVLPC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "inferior ventrolateral protocerebrum commissure" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100357 name: superior AMMC commissure (Drosophila) namespace: fly_anatomy.ontology def: "Component of the great commissure. It branches off anteriorly from the `great commissure` (FBbt:00007080), posterior to the `epaulette` (FBbt:00040040), and ends in the AMMC." [FBC:BrainName] synonym: "sAMMC commissure" EXACT [] synonym: "sAMMCC" EXACT BRAIN_NAME_ABV [FBC:BrainName] synonym: "superior AMMCC" EXACT [] synonym: "superior antennal mechanosensory and motor center commissure" EXACT [] is_a: UBERON:0001020 ! commissure relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100358 name: subesophageal ganglion serotonergic SE neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell body is located in one of 3 clusters on either side of the ventral midline in the ventral nerve cord of the labial segment." [FlyBase:FBrf0048551] synonym: "SE neuron" EXACT [FlyBase:FBrf0048551] synonym: "SE subesophageal ganglion neuron" EXACT [] synonym: "subesophageal ganglion SE neuron" EXACT [] synonym: "subesophageal ganglion neuron" RELATED [FlyBase:FBrf0048551] is_a: FBbt:00001972 ! subesophageal ganglion neuron (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00100359 name: serotonergic SP neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonin positive neuron located in one of two groups in the supraesophageal ganglion, in either the anterodorsal cortex (SP1) or slightly more posteriorly but also in the dorsal cortex region (SP2) (Valles and White, 1988)." [FlyBase:FBrf0048551] synonym: "sp" RELATED [] synonym: "supraesophageal ganglion neuron" RELATED [] is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00001366 ! supraesophageal ganglion neuron (Drosophila) [Term] id: FBbt:00100360 name: thoracic T neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell body is located in one of three clusters either side of the ventral midline in the pro-, meso- and metathoracic neuromeres in adults, and within the first, second and third segment of larvae (Valles and White, 1988)." [FlyBase:FBrf0048551] synonym: "T neuron" EXACT [FlyBase:FBrf0048551] is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00001983 ! thoracic neuron (Drosophila) [Term] id: FBbt:00100361 name: lateral Kolbchen lbd (Drosophila) namespace: fly_anatomy.ontology def: "Laterally located club-like sensory structure found in the mesothoracic and metathoracic segments of the larva." [FlyBase:FBrf0045359] synonym: "lateral black dot" EXACT [FlyBase:FBrf0041814] is_a: FBbt:00005199 ! Kolbchen (Drosophila) relationship: part_of FBbt:00007399 ! embryonic/larval T2/3 lateral sensory cluster (Drosophila) [Term] id: FBbt:00100362 name: antennal lobe hub (Drosophila) namespace: fly_anatomy.ontology def: "Central, non-glomerular region of the adult antennal lobe. It is distinguished from the antennal lobe glomeruli in that olfactory receptor neurons do not terminate here, though antennal lobe projection neurons and many local neurons run through this area. The density of synapses is lower than in the antennal lobe glomeruli." [FBC:BrainName] synonym: "ALH" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00100363 name: superior bulb (Drosophila) namespace: fly_anatomy.ontology def: "Region of the bulb that lies in a superior position between the pedunculus and the ellipsoid body. It contains many small glomeruli." [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003682 ! bulb (Drosophila) [Term] id: FBbt:00100364 name: inferior bulb (Drosophila) namespace: fly_anatomy.ontology def: "Region of the bulb that lies in an inferior position between the pedunculus and the ellipsoid body. It contains many small glomeruli." [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003682 ! bulb (Drosophila) [Term] id: FBbt:00100365 name: anterior bulb (Drosophila) namespace: fly_anatomy.ontology def: "Region of the bulb that lies beneath the pedunculus, close to the somata of the ellipsoid body neurons." [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003682 ! bulb (Drosophila) [Term] id: FBbt:00100366 name: plexiform lamina (Drosophila) namespace: fly_anatomy.ontology def: "The main part of the lamina that does not contain the terminals of photoreceptors from dorsal rim ommatidia." [FBC:BrainName] synonym: "PLLA" EXACT BRAIN_NAME_ABV [FBC:BrainName] is_a: FBbt:00040006 ! synaptic neuropil subdomain (Drosophila) relationship: part_of FBbt:00003708 ! lamina (Drosophila) [Term] id: FBbt:00100367 name: adult antennal lobe projection neuron DA4l adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DA4l. This neuron is born from the fifth division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729] subset: olfactory_system_draft ! adult olfactory system model synonym: "DA4l adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100368 name: adult uniglomerular antennal lobe projection neuron adPN (Drosophila) namespace: fly_anatomy.ontology def: "An adult uniglomerular antennal lobe projection neuron that is derived from the antero-dorsal antennal lobe neuroblast. All of these neurons have axons that fasciculate with the inner antenno-cerebral tract (iACT) and innervate the mushroom body calyx (via a collateral) and the lateral horn." [FlyBase:FBrf0141667, FlyBase:FBrf0146917, FlyBase:FBrf0205814, FlyBase:FBrf0211729] comment: Generalizations about fasciculation and innervation patterns are safe here because the entire lineage has been analyzed. See Yu et al., 2010 for details. subset: hidden_assertion ! Stanza contains hidden assertion. is_a: FBbt:00003991 ! unilateral ACT relay interneuron (Drosophila) is_a: FBbt:00007438 ! adult antennal lobe projection neuron adPN (Drosophila) is_a: FBbt:00007440 ! adult uniglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100369 name: adult multiglomerular antennal lobe projection neuron adPN (Drosophila) namespace: fly_anatomy.ontology def: "An adult uniglomerular antennal lobe projection neuron that is derived from the antero-dorsal antennal lobe neuroblast. All of these neurons have axons that fasciculate with the inner antenno-cerebral tract (iACT) and innervate the lateral horn." [FlyBase:FBrf0211729] comment: Generalizations about fasciculation and innervation patterns are safe here because the entire lineage has been analyzed. See Yu et al., 2010 for details. is_a: FBbt:00007438 ! adult antennal lobe projection neuron adPN (Drosophila) is_a: FBbt:00007441 ! adult multiglomerular antennal lobe projection neuron (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100370 name: multiglomerular antennal lobe projection neuron L1 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Multiglomerular adult antennal lobe projection neuron of the adPN lineage. It is born from the 18th larval division of the antero-dorsal antennal lobe neuroblast, after the division that produced VC3 adPN. Its innervation targets include parts of glomeruli DC3, VC3 and VM4." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g003] comment: See doi:10.1371/journal.pbio.1000461.g003 for image. synonym: "poly[L1] adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100369 ! adult multiglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100371 name: multiglomerular antennal lobe projection neuron L2 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Multiglomerular adult antennal lobe projection neuron of the adPN lineage. It is born from the 19th larval division of the antero-dorsal antennal lobe neuroblast, after the division that produced L1 adPN. Its innervation targets include parts of glomeruli VM4 and VL2p." [FlyBase:FBrf0211729doi:10.1371/journal.pbio.1000461.g003] comment: See doi:10.1371/journal.pbio.1000461.g003 for image. synonym: "poly[L2] adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100369 ! adult multiglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100372 name: multiglomerular antennal lobe projection neuron L3 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Multiglomerular adult antennal lobe projection neuron of the adPN lineage. It is born from the 20th larval division of the antero-dorsal antennal lobe neuroblast, after the division that produces L2 adPN. Its dendrites innervate glomeruli VL2p, VL2a and DL1l." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g003] comment: See doi:10.1371/journal.pbio.1000461.g003 for image. synonym: "poly[L3] adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100369 ! adult multiglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100373 name: multiglomerular antennal lobe projection neuron L4 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Multiglomerular adult antennal lobe projection neuron of the adPN lineage. It is born from the 21st larval division of the antero-dorsal antennal lobe neuroblast, after the division that produces L3 adPN. Its innervation targets include parts of glomeruli VL2a, Dl1l, DL2v and DL2d." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g003] comment: See doi:10.1371/journal.pbio.1000461.g003 for image. synonym: "poly[L4] adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100369 ! adult multiglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100374 name: multiglomerular antennal lobe projection neuron emb adPN (Drosophila) namespace: fly_anatomy.ontology def: "Multiglomerular adult antennal lobe projection neuron of the adPN lineage. It is born from the antero-dorsal neuroblast, from the 12th embryonic division of the antero-dorsal antennal lobe neuroblast after the division that produce DC1 adPN." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: See doi:10.1371/journal.pbio.1000461.g004 for image. synonym: "poly[emb] adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100369 ! adult multiglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100375 name: antennal lobe glomerulus DL1 lateral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Lateral region of antennal lobe glomerulus DL1." [FlyBase:FBrf0211729] synonym: "DL1l" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003968 ! antennal lobe glomerulus DL1 (Drosophila) [Term] id: FBbt:00100376 name: antennal lobe glomerulus DL2 ventral compartment (Drosophila) namespace: fly_anatomy.ontology def: "Ventral-most compartment of glomerulus DL2. It lies on the ventromedial margin of the dorsal compartment and immediately ventral to glomerulus DL1." [FlyBase:FBrf0211729] synonym: "DL2v" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003969 ! antennal lobe glomerulus DL2 (Drosophila) [Term] id: FBbt:00100377 name: antennal lobe glomerulus DL2 dorsal compartment (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal-most compartment of antennal lobe glomerulus DL2. It lies at the dorsoventral margin of the ventral compartment and ventral to glomerulus DA1." [FlyBase:FBrf0211729] synonym: "DL2d" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00007094 ! antennal lobe glomerulus compartment (Drosophila) relationship: part_of FBbt:00003969 ! antennal lobe glomerulus DL2 (Drosophila) [Term] id: FBbt:00100378 name: adult antennal lobe projection neuron VM4 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM4. This neuron is born from the sixth division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (VM4)" EXACT [FlyBrain_NDB:10438] synonym: "VM4 adPN" EXACT [FlyBase:FBrf0211729] xref: FlyBrain_NDB:10438 is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100379 name: adult antennal lobe projection neuron VM6+VP1 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM6+VP1. This neuron is born from the seventh division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. Perhaps should not be classified as uniglomerular? subset: olfactory_system_draft ! adult olfactory system model synonym: " adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100380 name: adult antennal lobe projection neuron VL2a adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VL2a. This neuron is born from the tenth division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (VL2a)" EXACT [FlyBrain_NDB:10435] synonym: "VL2a adPN" EXACT [FlyBase:FBrf0211729] xref: FlyBrain_NDB:10435 is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100381 name: adult antennal lobe projection neuron DM4 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DM4. This neuron is born from the 15th division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004.nFor image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "DM4 adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100382 name: adult antennal lobe projection neuron DL4 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage (embryonic born) whose dendrites innervate only antennal lobe glomerulus DL4. Neurons of this class are born during the 20th and final division of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "DL4 adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100383 name: adult antennal lobe projection neuron VC4 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VC4. Neurons of this class are derived from the 14th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "VC4 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100384 name: adult antennal lobe projection neuron DA3 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage (embryonic born) whose dendrites innervate only antennal lobe glomerulus DA3. Neurons of this class are born during the 2nd larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "DA3 adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100385 name: adult antennal lobe projection neuron VM5d adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM5d. Neurons of this class are derived from the 15th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "VM5d adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100386 name: adult antennal lobe projection neuron VM5v adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VM5v. Neurons of this class are derived from the 15th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g002. subset: olfactory_system_draft ! adult olfactory system model synonym: "VM5v adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100387 name: adult antennal lobe projection neuron VC3 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus VC3. Neurons of this class are derived from the 17th larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g003] comment: For image, see doi:10.1371/journal.pbio.1000461.g003. subset: olfactory_system_draft ! adult olfactory system model synonym: "ORN (VC3m)" EXACT [FlyBrain_NDB:10432] synonym: "VC3 adPN" EXACT [] xref: FlyBrain_NDB:10432 is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100388 name: adult antennal lobe projection neuron DL2v adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL2v. Neurons of this class are derived from the 22nd larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g003] comment: For image, see doi:10.1371/journal.pbio.1000461.g003. subset: olfactory_system_draft ! adult olfactory system model synonym: "DL2v adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100389 name: adult antennal lobe projection neuron DL2d adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage whose dendrites innervate only antennal lobe glomerulus DL2d. Neurons of this class are derived from the 23rd larval division of the antero-dorsal antennal lobe neuroblast (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g002] comment: For image, see doi:10.1371/journal.pbio.1000461.g003. subset: olfactory_system_draft ! adult olfactory system model synonym: "DL2d adPN" EXACT [FlyBase:FBrf0211729] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100390 name: dopaminergic medial neuron (Drosophila) namespace: fly_anatomy.ontology def: "Dopaminergic neuron located along the midline in each segment of the larval ventral nerve cord." [FlyBase:FBrf0100717] synonym: "dopamine medial neuron" EXACT [] is_a: FBbt:00001446 ! embryonic/larval neuron (Drosophila) is_a: FBbt:00005131 ! dopaminergic neuron (Drosophila) relationship: part_of UBERON:0000934 ! ventral nerve cord [Term] id: FBbt:00100391 name: serotonergic SE2 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Serotonergic neuron whose cell body is located in one of 3 clusters on either side of the ventral midline in the ventral nerve cord of the maxillary segment. Axons from this cluster cross the midline in the maxillary segment. In the adult they are located in the posterior-lateral subesophageal ganglion." [FlyBase:FBrf0048551] comment: Disambiguation: P.Taghert has confirmed that the serotonin-expressing SE2 cells are a distinct, non-overlapping cell population to the FMRFamide-expressing SE2 cells. subset: cur ! cur synonym: "SE2 neuron" EXACT [] synonym: "subesophageal ganglion SE neuron 2" EXACT [] synonym: "subesophageal ganglion neuron 2" EXACT [] is_a: CL:0000850 ! serotonergic neuron is_a: FBbt:00100358 ! subesophageal ganglion serotonergic SE neuron (Drosophila) relationship: part_of FBbt:00000013 ! maxillary segment (Drosophila) [Term] id: FBbt:00100392 name: FMRFamide SE3 neuron (Drosophila) namespace: fly_anatomy.ontology def: "Bilaterally paired (Kolhekar et al., 1997) FMRFamide expressing interneuron of the subesophageal neuromere. They are located more posteriorly than the FMRFamide SE2 neurons (Schneider et al., 1993)." [FlyBase:FBrf0059164] comment: Disambiguation: P.Taghert has confirmed that the FMRFamide-expressing SE3 cells are a distinct, non-overlapping cell population to the serotonergic SE3 cells. subset: cur ! cur synonym: "SE3 neuron" RELATED [] synonym: "subesophageal ganglion SE neuron 3" EXACT [] synonym: "subesophageal ganglion neuron 3" EXACT [] is_a: CL:0000099 ! interneuron is_a: FBbt:00001972 ! subesophageal ganglion neuron (Drosophila) [Term] id: FBbt:00100393 name: terminal organ ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Ganglion of the larval terminal organ. It contains the cell bodies of approximately 32-33 neurons (Python and Stocker, 2002), dendrites from which terminate in the terminal organ, and axons from which travel to the larval brain by way of the maxillary nerve." [FlyBase:FBrf0147119] synonym: "TOG" EXACT [FlyBase:FBrf0147119] synonym: "ganglion of the TO" EXACT [FlyBase:FBrf0147119] is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) [Term] id: FBbt:00100394 name: ventral organ ganglion (Drosophila) namespace: fly_anatomy.ontology def: "Ganglion that contains the cell bodies of neurons associated with the larval ventral organ. It connects to the central nervous system via the maxillary nerve." [FlyBase:FBrf0147119] is_a: UBERON:0000045 ! ganglion relationship: part_of FBbt:00001735 ! larval antennal segment (Drosophila) [Term] id: FBbt:00100395 name: antennal intermediate sensillum I2 (Drosophila) namespace: fly_anatomy.ontology def: "Intermediate sized sensilla of antennal segment 3 that contains two receptor cells." [FlyBase:FBrf0141649] synonym: "I-2" RELATED [] is_a: FBbt:00007359 ! sensillum intermedia of antennal segment 3 (Drosophila) [Term] id: FBbt:00100396 name: antennal intermediate sensillum I3 (Drosophila) namespace: fly_anatomy.ontology def: "Intermediate sized sensillum of the third antennal segment that contains three receptor cells." [FlyBase:FBrf0141649] synonym: "I-3" RELATED [FlyBase:FBrf0141649] is_a: FBbt:00067015 ! antennal intermediate sensillum ai1 (Drosophila) [Term] id: FBbt:00100397 name: tyraminergic neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any neuron (FBbt:00005106) that releases as a neurotransmitter, some tyramine (CHEBI:15760)." [FBC:auto_generated_definition] is_a: FBbt:00007368 ! aminergic neuron (Drosophila) [Term] id: FBbt:00100398 name: larval antennal lobe glomerulus 22c (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 22c is located at the ventrolateral edge of the anterior layer of the larval antennal lobe (LAL). It lies ventrolateral to glomerulus 24a, and lateral to glomerulus 42b. It is innervated by axons from larval olfactory receptor neuron Or22c (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "22c" RELATED [] synonym: "larval antennal lobe glomerulus 22c" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100399 name: larval antennal lobe glomerulus 24a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 24a is centrally located in the anterior layer of the larval antennal lobe (LAL). It lies immediately lateral to glomerulus 42a, dorsomedial to glomerulus 22c, and dorsolateral to glomerulus 42b. It is innervated by axons from larval olfactory receptor neuron Or24a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "24a" RELATED [] synonym: "larval antennal lobe glomerulus 24a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100400 name: larval antennal lobe glomerulus 42a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 42a is centrally located at the medial edge the anterior layer of the larval antennal lobe (LAL). It lies immediately medial to glomerulus 24a, and dorsomedial to glomerulus 42b. It is innervated by axons from larval olfactory receptor neuron Or42a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "42a" RELATED [] synonym: "larval antennal lobe glomerulus 42a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100401 name: larval antennal lobe glomerulus 42b (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 42b is located in the anterior layer of the larval antennal lobe (LAL). It lies ventromedial to glomerulus 24a, medial to glomerulus 22c, and ventrolateral to glomerulus 42a. It is innervated by axons from larval olfactory receptor neuron Or42b (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "42b" RELATED [] synonym: "larval antennal lobe glomerulus 42b" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100402 name: larval antennal lobe glomerulus 45b (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 45b is located along the lateral edge of the middle layer of the larval antennal lobe (LAL). It lies immediately dorsal to glomerulus 94b, and lateral to glomerulus 33b/47a. It is innervated by axons from larval olfactory receptor neuron Or45b (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "45b" RELATED [] synonym: "larval antennal lobe glomerulus 45b" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100403 name: larval antennal lobe glomerulus 94b (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 94b is located along the lateral edge of the middle layer of the larval antennal lobe (LAL). It lies immediately ventral to glomerulus 45b, and ventrolateral to glomerulus 33b/47a. It is innervated by axons from larval olfactory receptor neuron Or94b (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "94b" RELATED [] synonym: "larval antennal lobe glomerulus 94b" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100404 name: larval antennal lobe glomerulus 33a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 33a is located in the middle layer of the larval antennal lobe (LAL). It lies dorsolateral to glomerulus 59a, dorsomedial to glomerulus 45b, and dorsal to glomerulus 33b/47a. It is innervated by axons from larval olfactory receptor neuron Or33a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "33a" RELATED [] synonym: "larval antennal lobe glomerulus 33a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100405 name: larval antennal lobe glomerulus 33b/47a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 33b/47a is located in the middle layer of the larval antennal lobe (LAL). It lies medial to glomeruli 45b and 94b. It is innervated by axons from larval olfactory receptor neuron Or33b/Or47a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "33b/47a" RELATED [] synonym: "larval antennal lobe glomerulus 33b/47a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100406 name: larval antennal lobe glomerulus 67b (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 67b is located along the lateral edge of the middle layer of the larval antennal lobe (LAL). It lies immediately lateral to glomerulus 35a, and ventral to glomerulus 33b/47a. It is innervated by axons from larval olfactory receptor neuron Or67b (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "67b" RELATED [] synonym: "larval antennal lobe glomerulus 67b" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100407 name: larval antennal lobe glomerulus 59a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 59a is centrally located along the dorsal edge of the middle layer of the larval antennal lobe (LAL). It lies dorsomedial to glomerulus 33a, and lateral to glomerulus 83a. It is innervated by axons from larval olfactory receptor neuron Or59a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "59a" RELATED [] synonym: "larval antennal lobe glomerulus 59a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100408 name: larval antennal lobe glomerulus 83a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 83a is located at the dorsomedial edge of the middle layer of the larval antennal lobe (LAL). It lies medial to glomerulus 59a, and dorsomedial to glomerulus 85c. It is innervated by axons from larval olfactory receptor neuron Or83a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "83a" RELATED [] synonym: "larval antennal lobe glomerulus 83a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100409 name: larval antennal lobe glomerulus 35a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 35a is located along the ventral edge of the middle layer of the larval antennal lobe (LAL). It lies ventral to glomerulus 85c, and medial to glomerulus 67b. It is innervated by axons from larval olfactory receptor neuron Or35a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "35a" RELATED [] synonym: "larval antennal lobe glomerulus 35a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100410 name: larval antennal lobe glomerulus 63a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 63a is located at the dorsolateral edge of the posterior layer of the larval antennal lobe (LAL). It lies dorsolateral to glomerulus 49a, and is innervated by axons from larval olfactory receptor neuron Or63a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "63a" RELATED [] synonym: "larval antennal lobe glomerulus 63a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100411 name: larval antennal lobe glomerulus 30a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 30a is located at the ventrolateral edge of the posterior layer of the larval antennal lobe (LAL). It lies ventrolateral to glomerulus 82a. It is innervated by axons from larval olfactory receptor neuron Or30a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "30a" RELATED [] synonym: "larval antennal lobe glomerulus 30a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100412 name: larval antennal lobe glomerulus 49a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 49a is located in the posterior layer of the larval antennal lobe (LAL). It lies ventromedial to glomerulus 63a, and dorsal to glomerulus 82a. It is innervated by axons from larval olfactory receptor neuron Or49a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "49a" RELATED [] synonym: "larval antennal lobe glomerulus 49a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100413 name: larval antennal lobe glomerulus 82a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 82a is located in the posterior layer of the larval antennal lobe (LAL). It lies dorsomedial to glomerulus 30a, lateral to glomerulus 45a, and ventral to glomerulus 49a. It is innervated by axons from larval olfactory receptor neuron Or82a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "82a" RELATED [] synonym: "larval antennal lobe glomerulus 82a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100414 name: larval antennal lobe glomerulus 45a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 45a is centrally located in the posterior layer of the larval antennal lobe (LAL). It lies medial to glomerulus 82a, and lateral to glomerulus 13a. It is innervated by axons from larval olfactory receptor neuron Or45a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "45a" RELATED [] synonym: "larval antennal lobe glomerulus 45a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100415 name: larval antennal lobe glomerulus 13a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 13a is located in the posterior layer of the larval antennal lobe (LAL). It lies medial to glomerulus 45a, and ventrolateral to glomerulus 1a. It is innervated by axons from larval olfactory receptor neuron Or13a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "13a" RELATED [] synonym: "larval antennal lobe glomerulus 13a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100416 name: larval antennal lobe glomerulus 1a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 1a is located at the dorsomedial edge of the posterior layer of the larval antennal lobe (LAL). It lies dorsomedial to glomerulus 13a, and dorsomedial to glomerulus 74a. It is innervated by axons from larval olfactory receptor neuron Or1a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "1a" RELATED [] synonym: "larval antennal lobe glomerulus 1a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100417 name: larval antennal lobe glomerulus 74a (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 74a is located at the ventromedial edge of the posterior layer of the larval antennal lobe (LAL). It lies immediately ventral to glomerulus 13a. It is innervated by axons from larval olfactory receptor neuron Or74a (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "74a" RELATED [] synonym: "larval antennal lobe glomerulus 74a" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100418 name: larval olfactory receptor neuron Or1a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or1a (FBgn0029521)." [FlyBase:FBrf0208205] synonym: "ORN (Or1a)" EXACT [] synonym: "larval ORN Or1a" EXACT [] synonym: "larval odorant receptor neuron Or1a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100419 name: larval olfactory receptor neuron Or13a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or13a (FBgn0030715)." [FlyBase:FBrf0208205] synonym: "ORN (Or13a)" EXACT [] synonym: "larval ORN Or13a" EXACT [] synonym: "larval odorant receptor neuron Or13a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100420 name: larval olfactory receptor neuron Or22c (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or22c (FBgn0026396)." [FlyBase:FBrf0208205] synonym: "ORN (Or22c)" EXACT [] synonym: "larval ORN Or22c" EXACT [] synonym: "larval odorant receptor neuron Or22c" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100421 name: larval olfactory receptor neuron Or24a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or24a (FBgn0026394)." [FlyBase:FBrf0208205] synonym: "ORN (Or24a)" EXACT [] synonym: "larval ORN Or24a" EXACT [] synonym: "larval odorant receptor neuron Or24a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100422 name: larval olfactory receptor neuron Or30a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or30a (FBgn0032096)." [FlyBase:FBrf0208205] synonym: "ORN (Or30a)" EXACT [] synonym: "larval ORN Or30a" EXACT [] synonym: "larval odorant receptor neuron Or30a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100423 name: larval olfactory receptor neuron Or33a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or33a (FBgn0026392)." [FlyBase:FBrf0208205] synonym: "ORN (Or33a)" EXACT [] synonym: "larval ORN Or33a" EXACT [] synonym: "larval odorant receptor neuron Or33a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100424 name: larval olfactory receptor neuron Or33b/Or47a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or33b (FBgn0026391) and Or47a (FBgn0026386)." [FlyBase:FBrf0208205] synonym: "ORN (Or33b)" EXACT [] synonym: "larval ORN Or33b" EXACT [] synonym: "larval odorant receptor neuron Or33b" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100425 name: larval olfactory receptor neuron Or35a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or35a (FBgn0028946)." [FlyBase:FBrf0208205] synonym: "ORN (Or35a)" EXACT [] synonym: "larval ORN Or35a" EXACT [] synonym: "larval odorant receptor neuron Or35a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100426 name: larval olfactory receptor neuron Or42a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or42a (FBgn0033041)." [FlyBase:FBrf0208205] synonym: "ORN (Or42a)" EXACT [] synonym: "larval ORN Or42a" EXACT [] synonym: "larval odorant receptor neuron Or42a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100427 name: larval olfactory receptor neuron Or42b (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or42b (FBgn0033043)." [FlyBase:FBrf0208205] synonym: "ORN (Or42b)" EXACT [] synonym: "larval ORN Or42b" EXACT [] synonym: "larval odorant receptor neuron Or42b" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100428 name: larval olfactory receptor neuron Or45a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or45a (FBgn0033404)." [FlyBase:FBrf0208205] synonym: "ORN (Or45a)" EXACT [] synonym: "larval ORN Or45a" EXACT [] synonym: "larval odorant receptor neuron Or45a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100429 name: larval olfactory receptor neuron Or45b (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or45b (FBgn0033422)." [FlyBase:FBrf0208205] synonym: "ORN (Or45b)" EXACT [] synonym: "larval ORN Or45b" EXACT [] synonym: "larval odorant receptor neuron Or45b" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100430 name: larval olfactory receptor neuron Or47a namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or47a (FBgn0026386)." [FlyBase:FBrf0208205] is_obsolete: true synonym: "ORN (Or47a)" EXACT [] synonym: "larval ORN Or47a" EXACT [] synonym: "larval odorant receptor neuron Or47a" EXACT [] [Term] id: FBbt:00100431 name: larval olfactory receptor neuron Or49a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or49a (FBgn0033727)." [FlyBase:FBrf0208205] synonym: "ORN (Or49a)" EXACT [] synonym: "larval ORN Or49a" EXACT [] synonym: "larval odorant receptor neuron Or49a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100432 name: larval olfactory receptor neuron Or59a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or59a (FBgn0026384)." [FlyBase:FBrf0208205] synonym: "ORN (Or59a)" EXACT [] synonym: "larval ORN Or59a" EXACT [] synonym: "larval odorant receptor neuron Or59a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100433 name: larval olfactory receptor neuron Or63a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or63a (FBgn0035382)." [FlyBase:FBrf0208205] synonym: "ORN (Or63a)" EXACT [] synonym: "larval ORN Or63a" EXACT [] synonym: "larval odorant receptor neuron Or63a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100434 name: larval olfactory receptor neuron Or67b (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or67b (FBgn0036019)." [FlyBase:FBrf0208205] synonym: "ORN (Or67b)" EXACT [] synonym: "larval ORN Or67b" EXACT [] synonym: "larval odorant receptor neuron Or67b" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100435 name: larval olfactory receptor neuron Or74a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or74a (FBgn0036709)." [FlyBase:FBrf0208205] synonym: "ORN (Or74a)" EXACT [] synonym: "larval ORN Or74a" EXACT [] synonym: "larval odorant receptor neuron Or74a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100436 name: larval olfactory receptor neuron Or82a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or82a (FBgn0041621)." [FlyBase:FBrf0208205] synonym: "ORN (Or82a)" EXACT [] synonym: "larval ORN Or82a" EXACT [] synonym: "larval odorant receptor neuron Or82a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100437 name: larval olfactory receptor neuron Or83a (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or83a (FBgn0037322)." [FlyBase:FBrf0208205] synonym: "ORN (Or83a)" EXACT [] synonym: "larval ORN Or83a" EXACT [] synonym: "larval odorant receptor neuron Or83a" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100438 name: larval olfactory receptor neuron Or85c (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or85c (FBgn0037591)." [FlyBase:FBrf0208205] synonym: "ORN (Or85c)" EXACT [] synonym: "larval ORN Or85c" EXACT [] synonym: "larval odorant receptor neuron Or85c" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100439 name: larval olfactory receptor neuron Or94b (Drosophila) namespace: fly_anatomy.ontology def: "Larval olfactory receptor neuron (ORN) that expresses Or94b (FBgn0039034)." [FlyBase:FBrf0208205] synonym: "ORN (Or94b)" EXACT [] synonym: "larval ORN Or94b" EXACT [] synonym: "larval odorant receptor neuron Or94b" EXACT [] is_a: FBbt:00007388 ! embryonic/larval olfactory receptor neuron (Drosophila) relationship: part_of UBERON:0002548 ! larva [Term] id: FBbt:00100440 name: larval antennal lobe glomerulus 85c (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus 85c is located in the middle layer of the larval antennal lobe (LAL). It lies dorsal to glomerulus 35a and ventromedial to glomerulus 59a. It is innervated by axons from larval olfactory receptor neuron Or85c (Masuda-Nakagawa et al., 2009)." [FlyBase:FBrf0208205] synonym: "85c" RELATED [] synonym: "larval antennal lobe glomerulus 85c" EXACT [] is_a: FBbt:00007153 ! embryonic/larval antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007127 ! embryonic/larval antennal lobe (Drosophila) [Term] id: FBbt:00100441 name: larval MB calyx glomerulus L3 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located dorsal and slightly lateral to the midline of the larval mushroom body calyx. It lies posteriolateral to calyx glomerulus D1 and lateral to calyx glomerulus D3. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 94b." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100442 name: larval MB calyx glomerulus L4 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located in the anteriolateral corner of the larval mushroom body calyx. It lies anterior to calyx glomerulus L5 and ventrolateral to calyx glomerulus D2. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 22c." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100443 name: larval MB calyx glomerulus L6 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located along the lateral edge of the larval mushroom body calyx. It lies ventral to calyx glomerulus L2 and posteriodorsal to calyx glomerulus L5. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 30a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100444 name: larval MB calyx glomerulus L8 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is centrally located in the larval mushroom body calyx. It lies medial to calyx glomerulus L7 and posterior to calyx glomerulus L11. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 1a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100445 name: larval MB calyx glomerulus L9 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located posteriorly in the larval mushroom body calyx. It lies medially to calyx glomerulus A5 and anterior to calyx glomerulus V5. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 42b." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100446 name: larval MB calyx glomerulus L10 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located ventrolaterally in the larval mushroom body calyx. It lies ventral to calyx glomerulus L7 and posterior to calyx glomerulus L5. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 85c." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100447 name: larval MB calyx glomerulus L11 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located centrolaterally in the larval mushroom body calyx. It lies anterior to calyx glomerulus L8 and medial to calyx glomerulus L6. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 45a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100448 name: larval MB calyx glomerulus M6 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located ventromedial and slightly posterior in the larval mushroom body calyx. It lies anteroventral to calyx glomerulus A3. It is innervated by an extrinsic neuron that arborizes close to larval antennal lobe glomerulus 59a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100449 name: larval MB calyx glomerulus V1 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located anteroventral in the larval mushroom body calyx. It lies lateral to calyx glomerulus V9 and ventral to calyx glomerulus L4. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 35a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100450 name: larval MB calyx glomerulus V9 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located anteroventral in the larval mushroom body calyx. It lies medial to calyx glomerulus V1. Extrinsic neurons connect this glomerulus to larval antennal lobe glomerulus 42a." [FlyBase:FBrf0208205, FlyBase:FBrf0211879] is_a: UBERON:0001047 ! neural glomerulus [Term] id: FBbt:00100451 name: larval MB calyx glomerulus M5 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the larval mushroom body calyx. It is located posteriomedial to the larval mushroom body calyx L1." [FlyBase:FBrf0191451] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100452 name: larval MB calyx glomerulus A5 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus that is located ventrolateral in the larval mushroom body calyx. It lies immediately ventral to MB calyx glomerulus A1." [FlyBase:FBrf0208205] is_a: FBbt:00007224 ! larval mushroom body calyx glomerulus (Drosophila) relationship: part_of FBbt:00007191 ! calyx of larval mushroom body (Drosophila) [Term] id: FBbt:00100453 name: larval uniglomerular projection neuron 1a-A4 (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 1a. It projects to larval mushroom body calyx glomerulus A4." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100474 ! larval uniglomerular projection neuron 1a (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100454 name: larval uniglomerular projection neuron 1a-A4+L8 (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 1a. It projects to larval mushroom body calyx glomeruli A4 and L8." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100474 ! larval uniglomerular projection neuron 1a (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100455 name: larval uniglomerular projection neuron 13a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 13a. It projects to larval mushroom body calyx glomerulus L1." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100456 name: larval uniglomerular projection neuron 22c (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 22c. It projects to larval mushroom body calyx glomerulus L4." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100457 name: larval uniglomerular projection neuron 24a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 24a. It projects to larval mushroom body calyx glomerulus L2." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100458 name: larval uniglomerular projection neuron 30a-L6 (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 30a. It projects to larval mushroom body calyx glomerulus L6." [FlyBase:FBrf0208205] synonym: "larval uniglomerular projection neuron 30a" RELATED [] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100479 ! larval uniglomerular projection neuron 30a (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100459 name: larval uniglomerular projection neuron 30a-M4 (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 30a. It projects to larval mushroom body calyx glomerulus M4." [FlyBase:FBrf0208205] synonym: "larval uniglomerular projection neuron 30a" RELATED [] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100479 ! larval uniglomerular projection neuron 30a (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100460 name: larval uniglomerular projection neuron 33a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 33a. It projects to larval mushroom body calyx glomerulus I3." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100461 name: larval uniglomerular projection neuron 33b/47a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 33b/47a. It projects to larval mushroom body calyx glomerulus D1." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100462 name: larval uniglomerular projection neuron 35a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 35a. It projects to larval mushroom body calyx glomerulus V1." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100463 name: larval uniglomerular projection neuron 42a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 42a. It projects to larval mushroom body calyx glomerulus V9." [FlyBase:FBrf0208205] is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100464 name: larval uniglomerular projection neuron 42b (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 42b. It projects to larval mushroom body calyx glomerulus L9." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100465 name: larval uniglomerular projection neuron 45a-A3 (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 45a. It projects to larval mushroom body calyx glomerulus A3." [FlyBase:FBrf0208205] comment: Masuda-Nakagawa et al., (2009), describe several examples of single cell clones of projection neurons innervating larval antennal lobe glomerulus 45a and projects to both MB calyx glomeruli A3 and L11. However, they also show a single example that only innervates MB calyx glomeruli A3. is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100475 ! larval uniglomerular projection neuron 45a (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100466 name: larval uniglomerular projection neuron 45a-A3+L11 (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 45a. It projects to larval mushroom body calyx glomeruli A3 and L11." [FlyBase:FBrf0208205] comment: Masuda-Nakagawa et al., (2009), describe several examples of single cell clones that innervate both MB calyx glomeruli A3 and L11. However, they also show a single example that only innervates MB calyx glomeruli A3. is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100475 ! larval uniglomerular projection neuron 45a (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100467 name: larval uniglomerular projection neuron 45b (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 45b. It projects to larval mushroom body calyx glomerulus D4." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100468 name: larval uniglomerular projection neuron 49a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 49a. It projects to larval mushroom body calyx glomerulus D3." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100469 name: larval uniglomerular projection neuron 59a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 59a. It projects to larval mushroom body calyx glomerulus A5." [FlyBase:FBrf0208205] comment: Masuda-Nakagawa et al., (2009), describe a single example of a projection neuron that connects larval antennal lobe glomerulus 59a to MB calyx glomeruli A4 and L8, or to A3 and L11. They comment that this pattern is not consistent with other examples, and as such we will not create a term for this projection neuron without further evidence of its veracity. is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100470 name: larval uniglomerular projection neuron 82a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 82a. It projects to larval mushroom body calyx glomerulus A1." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100471 name: larval uniglomerular projection neuron 83a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 83a. It projects to larval mushroom body calyx glomerulus M3." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100472 name: larval uniglomerular projection neuron 85c (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 85c. It projects to larval mushroom body calyx glomerulus L10." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100473 name: larval uniglomerular projection neuron 94b (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 94b. It projects to larval mushroom body calyx glomerulus L3." [FlyBase:FBrf0208205] is_a: FBbt:00100227 ! mushroom body extrinsic neuron (Drosophila) is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100474 name: larval uniglomerular projection neuron 1a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 1a." [FlyBase:FBrf0208205] is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100475 name: larval uniglomerular projection neuron 45a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 45a." [FlyBase:FBrf0208205] is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100476 name: antennal lobe glomerulus 1 (Drosophila) namespace: fly_anatomy.ontology def: "Glomerulus of the adult antennal lobe located on the same frontal plane as glomerulus DM3 (a landmark glomerulus). It lies ventral to glomerulus DM3 and lateral to glomerulus DM2." [FlyBase:FBrf0107836] comment: Note: This glomerulus not found in all samples when it was originally categorised, so may not be present in all animals. is_a: FBbt:00003925 ! antennal lobe glomerulus (Drosophila) [Term] id: FBbt:00100477 name: embryonic/larval cholinergic antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "An embryonic/larval antennal lobe projection neuron that is cholinergic. These neurons constitute about 50% of the embryonic/larval antennal lobe projection neurons that have an anterodorsally located soma (Python and Stocker, 2002)." [FlyBase:FBrf0152159, FlyBase:FBrf0187327] is_a: FBbt:00007173 ! cholinergic neuron (Drosophila) is_a: FBbt:00007225 ! embryonic/larval antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100478 name: embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) namespace: fly_anatomy.ontology def: "Any uniglomerular antennal lobe projection neuron (FBbt:00007383) that is part of some embryonic/larval brain (FBbt:00001920)." [FBC:auto_generated_definition, FlyBase:FBrf0187327, FlyBase:FBrf0208205] is_a: FBbt:00007225 ! embryonic/larval antennal lobe projection neuron (Drosophila) is_a: FBbt:00007383 ! uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100479 name: larval uniglomerular projection neuron 30a (Drosophila) namespace: fly_anatomy.ontology def: "Larval projection neuron whose dendrites innervate larval antennal lobe glomerulus 30a." [FlyBase:FBrf0208205] is_a: FBbt:00100478 ! embryonic/larval uniglomerular antennal lobe projection neuron (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100480 name: lobula columnar neuron Lcn9 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron whose cell body lies in the lateral cell body region. The axon of Lcn9 fasciculates in the anterior optic tract with Lcn6 and terminate in the central part of the dorsal-posterior ventrolateral protocerebrum. Dendrites arborize in lobula layers 3, 4, 5 and 6." [FlyBase:FBrf0193607] synonym: "LC9" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00100481 name: adult antennal lobe projection neuron VM3 adPN (Drosophila) namespace: fly_anatomy.ontology def: "Antennal lobe projection neuron from the ad neuroblast lineage (embryonic born) whose dendrites innervate only antennal lobe glomerulus VM3. Neurons of this class are born during the 17th and 19th divisions of the antero-dorsal antennal lobe neuroblast during embryogenesis (Yu et al., 2010)." [FlyBase:FBrf0211729, doi:10.1371/journal.pbio.1000461.g004] comment: For image, see doi:10.1371/journal.pbio.1000461.g004. subset: olfactory_system_draft ! adult olfactory system model synonym: "VM3 adPN" EXACT [] is_a: FBbt:00100368 ! adult uniglomerular antennal lobe projection neuron adPN (Drosophila) relationship: develops_from FBbt:00067346 ! antero-dorsal AL neuroblast (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) [Term] id: FBbt:00100482 name: lobula columnar neuron Lcn10 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron whose cell body lies in the lateral cell body region. Its axon crosses ipsilaterally along the anterior optic tract, projecting to the optic tubercle. It arborizes in lobula layers 3, 4, 5 and 6." [FlyBase:FBrf0193607] comment: Otsuna and Ito (2006) suggest that there could be three subgroups of Lcn10 neurons (termed A, B and C) based on high-level magnification differences in fibers innervating the optic tubercle. synonym: "LC10" EXACT [FlyBase:FBrf0193607] synonym: "LCN" RELATED [FlyBase:FBrf0039192] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00100483 name: lobula columnar neuron Lcn11 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron whose cell body lies in the dorsal area of the lateral cell body region. It arborizes in lobula layers 2, 3 and 4, and terminates in the posteriolateral part of the ventrolateral protocerebrum. There are 36-40 cells in this class." [FlyBase:FBrf0193607] synonym: "LC11" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00100484 name: lobula columnar neuron Lcn12 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron whose cell body lies in the anterior-ventral area of the lateral cell body region. It has synaptic varicosities in lobula layers 3 and 4, and terminates in the ventrolateral protocerebrum. There are 30-35 cells in this class." [FlyBase:FBrf0193607] synonym: "LC12" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00100485 name: lobula columnar neuron Lcn13 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that arborizes in lobula layers 3, 4 and 5, and terminates in the posteriolateral protocerebrum. There are 16-17 cells in this class, and they have their cell bodies in the anterior ventral area of the lateral cell body region." [FlyBase:FBrf0193607] synonym: "LC13" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) [Term] id: FBbt:00100486 name: lobula columnar neuron Lcn14 (Drosophila) namespace: fly_anatomy.ontology def: "An extrinsic columnar neuron that projects across the great commissure and contacts the surface of the lobula, but does not penetrate into any of its layers. There are 32-38 neurons in this group, and they have their cell bodies in the mid-dorsal area of the lateral cell body region." [FlyBase:FBrf0193607] synonym: "LC14" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003870 ! lobula columnar neuron (Drosophila) is_a: FBbt:00007407 ! great commissural interneuron (Drosophila) [Term] id: FBbt:00100487 name: lobula tangential neuron Lt11 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron whose cell body is located in the anterior dorsal area of the lateral cell body region. It forms varicosities in lobula layers 3, 4 and 5, and in the ventrolateral protocerebrum." [FlyBase:FBrf0193607] synonym: "LT11" EXACT [FlyBase:FBrf0193607] synonym: "lobular tangential neuron Lt11" EXACT [] is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00100488 name: lobula tangential neuron Lt12 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron whose cell body is located in the anterior area of the lateral cell body region. The cell body fiber bifurcates at the neck of the lobula. The branch towards the lobula arborizes at the posterior edge of the lobula and enters the neuropil in lobula layer 4. The branch towards the central brain projects along the lobula/lobula-plate bundle and terminates in the medial ventrolateral protocerebrum." [FlyBase:FBrf0193607] synonym: "LT12" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00100489 name: lobula tangential neuron Lt31 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron whose cell body is located in the central brain cortex, posterior to the posterior lateral protocerebrum (plpr). The cell body fiber runs anteriorly through the plpr neuropil and bifurcates in the ventrolateral protocerebrum. The lateral branch makes a turn and runs ventroposterior towards the neck of the lobula. From there the neuron forms extensive tree-like branches in lobula layer 4. The medial branch makes a right-angle turn to run ventroposterior towards the posterior plpr. It forms terminals in the area that is close to the position of the cell body. There is only a single neuron in this class." [FlyBase:FBrf0193607] synonym: "LT31" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00100490 name: lobula tangential neuron Lt32 (Drosophila) namespace: fly_anatomy.ontology def: "A lobula tangential neuron whose cell body is located lateral to the esophageal foramen. The cell body fiber runs posteriorly along the esophagus and turns upwards near the posterior end of the brain where it forms a Y-shaped branch. One branch runs laterally to project to the lobula, and the other crosses the midline to innervate the contralateral lobula. Along the trajectory towards the lobula, the fiber forms another collateral branch which innervates the posterior lateral protocerebrum. The main branch reaches the lobula and forms extensive tree-like arborizations with varicosities in lobula layers 5 and 6. There is only one neuron per brain hemisphere in this group." [FlyBase:FBrf0193607] synonym: "LT32" EXACT [FlyBase:FBrf0193607] is_a: FBbt:00003859 ! lobula tangential neuron (Drosophila) [Term] id: FBbt:00100491 name: abdominal medial-most cell body glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most cell body glia of the embryonic/larval abdominal hemineuromere. There is only one of these per hemineuromere." [PMID:21438012] comment: The medial-most cell body glial cells are likely the VUM-support cells described by Klambt and Goodman (1991), and Menne and Klambt (1994). synonym: "abdominal MM-CBG" EXACT [] synonym: "abdominal VUM support cell" RELATED [FlyBase:FBrf0054242] synonym: "abdominal VUM-support cell" RELATED [FlyBase:FBrf0054242] synonym: "abdominal medial most cell body glial cell" EXACT [] is_a: FBbt:00001299 ! medial-most cell body glial cell (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00100492 name: thoracic medial-most cell body glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Medial-most cell body glia of the embryonic/larval thoracic hemineuromere. There are two of these per hemineuromere." [PMID:21438012] synonym: "thoracic MM-CBG" EXACT [] synonym: "thoracic VUM support cell" RELATED [FlyBase:FBrf0054242] synonym: "thoracic VUM-support cell" RELATED [FlyBase:FBrf0054242] synonym: "thoracic medial most cell body glial cell" EXACT [] is_a: FBbt:00001299 ! medial-most cell body glial cell (Drosophila) relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) [Term] id: FBbt:00100493 name: thoracic medial-most cell body glial cell 1 (Drosophila) namespace: fly_anatomy.ontology def: "Anterior-most of the two thoracic medial-most cell body glial cells." [PMID:21438012] synonym: "thoracic MM-CBG" RELATED [] synonym: "thoracic VUM support cell" RELATED [FlyBase:FBrf0054242] synonym: "thoracic VUM-support cell" RELATED [FlyBase:FBrf0054242] synonym: "thoracic medial most cell body glial cell" RELATED [] is_a: FBbt:00100492 ! thoracic medial-most cell body glial cell (Drosophila) relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) [Term] id: FBbt:00100494 name: thoracic medial-most cell body glial cell 2 (Drosophila) namespace: fly_anatomy.ontology def: "Posterior-most of the two thoracic medial-most cell body glial cells." [PMID:21438012] synonym: "thoracic MM-CBG" RELATED [] synonym: "thoracic VUM support cell" RELATED [FlyBase:FBrf0054242] synonym: "thoracic VUM-support cell" RELATED [FlyBase:FBrf0054242] synonym: "thoracic medial most cell body glial cell" RELATED [] is_a: FBbt:00100492 ! thoracic medial-most cell body glial cell (Drosophila) relationship: part_of FBbt:00000166 ! embryonic thorax (Drosophila) relationship: part_of FBbt:00001741 ! larval thorax (Drosophila) [Term] id: FBbt:00100495 name: nerve root glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Neuropil associated glial cell that lies along the nerve roots." [PMID:21438012] is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00007602 ! nerve root (Drosophila) [Term] id: FBbt:00100496 name: medial segmental nerve root glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Segmental nerve root glial cell located along the longitudinal axis of the segmental nerve. There are two cells in this class that lie in tandem covering several branches of the nerve root and, unlike the medial intersegmental nerve glial cells, are slightly detached from the neuropil proper." [PMID:21438012] is_a: FBbt:00001307 ! segmental nerve root glial cell (Drosophila) [Term] id: FBbt:00100497 name: adult glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell that is part of the adult." [FlyBase:FBrf0206543, PMID:21438012] synonym: "glia" RELATED [] is_a: CL:0000124 ! glial cell (sensu Nematoda and Protostomia) relationship: part_of FBbt:00003559 ! adult nervous system (Drosophila) [Term] id: FBbt:00100499 name: adult CNS glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell that is part of the adult central nervous system." [FlyBase:FBrf0206543] is_a: FBbt:00001256 ! CNS glial cell (Drosophila) is_a: FBbt:00100497 ! adult glial cell (Drosophila) relationship: part_of FBbt:00003623 ! adult central nervous system (Drosophila) [Term] id: FBbt:00100500 name: adult surface associated glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the adult that is associated with the surface of the brain." [FlyBase:FBrf0206543, PMID:20109517] is_a: FBbt:00005152 ! glial cell of the perineurium (Drosophila) is_a: FBbt:00100499 ! adult CNS glial cell (Drosophila) [Term] id: FBbt:00100501 name: adult cortex associated glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the adult that is associated with the cortex of the brain." [FlyBase:FBrf0206543] synonym: "cell body glial cell" RELATED [PMID:21438012] synonym: "cortex glial cell" RELATED [] is_a: FBbt:00001297 ! cortex associated CNS glial cell (Drosophila) is_a: FBbt:00100499 ! adult CNS glial cell (Drosophila) relationship: part_of FBbt:00003625 ! adult brain cortex (Drosophila) relationship: part_of FBbt:00100503 ! glial mesh (Drosophila) [Term] id: FBbt:00100502 name: adult neuropil associated glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the adult that is associated with a neuropil of the brain. There are approximately 200 neuropil associated glial cells per hemisphere of the adult brain (Hartenstein, 2011)." [FlyBase:FBrf0206543, PMID:21438012] is_a: FBbt:00100499 ! adult CNS glial cell (Drosophila) relationship: part_of UBERON:0002606 ! neuropil [Term] id: FBbt:00100503 name: glial mesh (Drosophila) namespace: fly_anatomy.ontology def: "Mesh-like structure composed of glial cells and covering the cortex of the adult brain. It is composed of glial cells that locally elaborate and enwrap neuronal cell bodies." [FlyBase:FBrf0206543] is_a: FBbt:00100313 ! multicellular structure (Drosophila) [Term] id: FBbt:00100504 name: ensheathing neuropil associated glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the adult brain that elaborates along the outer surface of its associated neuropil. Glia of this class may also surround neuropil bundles such as commissures or tracts." [FlyBase:FBrf0206543] comment: Edwards and Meinertzhagen (2010) state that the ensheathing neuropil glia does not include glia that ensheath tracts that project between neuropils. This is because, although they are morphologically similar, those glia do not have their cell bodies within the neuropil nor do they associate with synapses. synonym: "ensheathing glial cell" EXACT [] synonym: "fibrous lamellar neuropil associated glial cell" EXACT [] synonym: "neuropil ensheathing glial cell" EXACT [] is_a: FBbt:00100502 ! adult neuropil associated glial cell (Drosophila) [Term] id: FBbt:00100505 name: reticular neuropil associated glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Neuropil associated glial cell of the adult brain that has a dendritic morphology which elaborates inside the associated neuropil." [FlyBase:FBrf0206543] comment: Named as 'astrocyte-like' due to their resemblance to vertebrate astrocytes (Awasaki et al., 2008). However, Hartenstein (2011) suggests that use of potentially unwarranted homologies with vertebrate cell types should be avoided. synonym: "astrocyte-like neuropil associated glial cell" EXACT [FlyBase:FBrf0206543] synonym: "astrocyte-like neuropile associated glial cell" EXACT [] synonym: "dendritic neuropil associated glial cell" EXACT [] synonym: "reticular neuropil-associated glial cell" EXACT [PMID:21438012] is_a: FBbt:00100502 ! adult neuropil associated glial cell (Drosophila) [Term] id: FBbt:00100506 name: adult brain perineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Small, oblong-shaped glial cell that is part of the (outer) perineurial sheath layer on the surface of the adult brain. It is located on top of the basal glial cell layer that is composed of the subperineurial glial cells." [FlyBase:FBrf0206543, PMID:20109517] comment: The perineurial glial cells develop post-embryonically, in a non-GCM manner, and are thus likely to function only in the blood-brain-barrier of the adult (Edwards and Meinertzhagen, 2010). is_a: FBbt:00007597 ! CNS perineurial sheath glial cell (Drosophila) is_a: FBbt:00100499 ! adult CNS glial cell (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) relationship: part_of FBbt:00007089 ! perineurial sheath (Drosophila) [Term] id: FBbt:00100507 name: adult brain subperineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Large, sheet-like glial cell that is a component of the basal glial layer of the adult brain surface. It is located below the apical glial layer that is composed of the perineurial glial cells." [FlyBase:FBrf0206543, PMID:20109517] synonym: "adult brain basal glial cell" RELATED [] synonym: "adult brain subperineurial glia" RELATED [] synonym: "adult brain subperineurial surface associated glial cell" EXACT [FlyBase:FBrf0206543] is_a: FBbt:00007605 ! CNS subperineurial glial cell (Drosophila) is_a: FBbt:00100499 ! adult CNS glial cell (Drosophila) relationship: part_of FBbt:00003624 ! adult brain (Drosophila) relationship: part_of UBERON:0000202 ! glial blood brain barrier [Term] id: FBbt:00100508 name: adult satellite glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Satellite glial cell of the adult brain." [FlyBase:FBrf0096428, FlyBase:FBrf0206739, PMID:21438012] is_a: FBbt:00005723 ! satellite glial cell (Drosophila) is_a: FBbt:00100501 ! adult cortex associated glial cell (Drosophila) [Term] id: FBbt:00100509 name: embryonic/larval satellite glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Satellite glial cell of the embryonic/larval brain." [FlyBase:FBrf0096428, FlyBase:FBrf0206739, PMID:21438012] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00005723 ! satellite glial cell (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00100510 name: embryonic/larval CNS perineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the perineurial glial sheath in the embryonic/larval CNS." [PMID:20109517, PMID:21438012] comment: The perineurial glial cells develop post-embryonically (Edwards and Meinertzhagen, 2010). synonym: "embryonic/larval perineurial glial cell" RELATED [] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00007597 ! CNS perineurial sheath glial cell (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) relationship: part_of FBbt:00007089 ! perineurial sheath (Drosophila) [Term] id: FBbt:00100511 name: embryonic/larval PNS perineurial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the embryonic/larval peripheral nervous system that ensheathes axons and dendrites. The perineurial layer of glial cell lie on top of the inner, subperineurial glial cells (Banerjee et al., 2006)." [FlyBase:FBrf0191040, PMID:21438012] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001320 ! PNS glial cell (Drosophila) is_a: FBbt:00005153 ! perineurial sheath glial cell (Drosophila) relationship: part_of FBbt:00005893 ! embryonic/larval peripheral nervous system (Drosophila) relationship: part_of FBbt:00007089 ! perineurial sheath (Drosophila) [Term] id: FBbt:00100513 name: adult epithelial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial glial cell of the adult." [FlyBase:FBrf0055906, FlyBase:FBrf0134808, FlyBase:FBrf0209968] is_a: FBbt:00005721 ! epithelial glial cell (Drosophila) is_a: FBbt:00100504 ! ensheathing neuropil associated glial cell (Drosophila) is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00100514 name: embryonic/larval epithelial glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Epithelial glial cell of the embryo/larva." [FlyBase:FBrf0055906, FlyBase:FBrf0134808, FlyBase:FBrf0209968] is_a: FBbt:00001303 ! neuropil associated CNS glial cell (Drosophila) is_a: FBbt:00005721 ! epithelial glial cell (Drosophila) [Term] id: FBbt:00100515 name: adult marginal glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Marginal glial cell of the adult." [FlyBase:FBrf0055906, FlyBase:FBrf0134808] is_a: FBbt:00005722 ! marginal glial cell (Drosophila) is_a: FBbt:00100502 ! adult neuropil associated glial cell (Drosophila) [Term] id: FBbt:00100516 name: embryonic/larval marginal glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Marginal glial cell that is part of the embryonic/larval brain." [FlyBase:FBrf0055906, FlyBase:FBrf0134808] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001303 ! neuropil associated CNS glial cell (Drosophila) is_a: FBbt:00005722 ! marginal glial cell (Drosophila) relationship: part_of FBbt:00001920 ! embryonic/larval brain (Drosophila) [Term] id: FBbt:00100517 name: adult optic lobe glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the adult that is associated with the optic lobe." [FlyBase:FBrf0096428, PMID:20109517] is_a: FBbt:00100499 ! adult CNS glial cell (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00100518 name: embryonic/larval distal satellite glial cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0055906, FlyBase:FBrf0210316] is_a: FBbt:00100509 ! embryonic/larval satellite glial cell (Drosophila) [Term] id: FBbt:00100519 name: fenestrated glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface glial cell of the adult optic lobe. The fenestrated glia form a layer overlying the pseudocartridge glial cell layer and contact the basement membrane." [PMID:20109517] comment: In the literature, fenestrated and pseudocartridge glial cells are often grouped as subtypes of subretinal glial cells. However, Edwards and Meinertzhagen (2010) argue that this is incorrect, and that these cell types should be regarded as distinct cell types. This differentiation is based on anatomical uniqueness and distinct functions. Indeed, they propose the abolition of the term 'subretinal glial cell' in favour of fenestrated and pseudocartridge glial cells. is_a: FBbt:00004210 ! subretinal glial cell (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00100520 name: pseudocartridge glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Surface glial cell of the adult optic lobe. The pseudocartridge glial cells form a glial layer beneath the distal fenestrated glial cells." [PMID:20109517] comment: In the literature, fenestrated and pseudocartridge glial cells are often grouped as subtypes of subretinal glial cells. However, Edwards and Meinertzhagen (2010) argue that this is incorrect, and that these cell types should be regarded as distinct cell types. This differentiation is based on anatomical uniqueness and distinct functions. Indeed, they propose the abolition of the term 'subretinal glial cell' in favour of fenestrated and pseudocartridge glial cells. synonym: "subretinal glial cell" RELATED [] is_a: FBbt:00004210 ! subretinal glial cell (Drosophila) relationship: part_of UBERON:0006795 ! arthropod optic lobe [Term] id: FBbt:00100521 name: embryonic/larval wrapping glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the embryonic/larval eye disc that lies above the outgrowing photoreceptor axons and ensheathes bundles of axons extending through the optic stalk (Hummel et al., 2002; Edwards and Hartenstein, 2010). The wrapping glial cells are, in turn, surrounded and wrapped by surface glial cells." [FlyBase:FBrf0145174, FlyBase:FBrf0201162, FlyBase:FBrf0210316] comment: Wrapping glia differ from the surface glia of the optic stalk in that they are delayed in migrating to the eye disc, and are not involved in directing photoreceptor axons towards the optic stalk (Hummel et al., 2002; Edwards and Meinertzhagen, 2010; Silies et al., 2007). Wrapping glial cells are associated with Bolwig's nerve, but do not wrap it (Silies et al., 2007). synonym: "embryonic/larval wrapping glia" EXACT [] is_a: FBbt:00001252 ! surface associated glial cell (Drosophila) is_a: FBbt:00001320 ! PNS glial cell (Drosophila) relationship: part_of FBbt:00001768 ! eye disc (Drosophila) relationship: part_of FBbt:00001931 ! embryonic/larval optic stalk (Drosophila) [Term] id: FBbt:00100522 name: embryonic/larval optic stalk surface glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell associated with the optic stalk that separates the R cells axons from the eye disc and hemolymph. The surface glial cells envelop the wrapping glia (Hummel et al., 2002)." [FlyBase:FBrf0145174, FlyBase:FBrf0201162, FlyBase:FBrf0210316] is_a: FBbt:00001252 ! surface associated glial cell (Drosophila) is_a: FBbt:00001320 ! PNS glial cell (Drosophila) relationship: part_of FBbt:00001931 ! embryonic/larval optic stalk (Drosophila) [Term] id: FBbt:00100523 name: adult distal satellite glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Satellite glial cell of the adult optic lobe. It lies in a glial layer beneath the pseudocartridge glial cell layer, and above the proximal satellite glial cell layer. It ensheathes cell bodies of monopolar neurons of the lamina cortex." [PMID:20109517] synonym: "rind satellite glial cell" RELATED [] is_a: FBbt:00100508 ! adult satellite glial cell (Drosophila) [Term] id: FBbt:00100524 name: adult proximal satellite glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Satellite glial cell of the adult optic lobe. It is located in a layer between the distal satellite glial layer and the epithelial glia. These glial cells invest the photoreceptor axon bundles and the necks of monopolar neurons." [PMID:20109517] synonym: "proximal glial cell" RELATED [] is_a: FBbt:00100508 ! adult satellite glial cell (Drosophila) [Term] id: FBbt:00100525 name: adult optic chiasm glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell of the adult fly that is located in the optic chiasm (Tix et al., 1997). Members of this group of glial cells are arranged in rows between successive dorsoventral sheets of intercrossing fibers of the outer and inner chiasmata (Edwards and Meinertzhagen, 2010; Tix et al., 1997)." [FlyBase:FBrf0096428, FlyBase:FBrf0210316] is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of FBbt:00003921 ! optic chiasm (Drosophila) [Term] id: FBbt:00100526 name: adult outer optic chiasm giant glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Large glial cell located in the outer optic chiasm of the adult optic lobe. It extends many cytoplasmic processes that enwraps fiber bundles at and near the sites of axonal intersection (Tix et al., 1997)." [FlyBase:FBrf0096428] synonym: "adult outer optic chiasm large glial cell" EXACT [] synonym: "giant glial cell" BROAD [] is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of FBbt:00005810 ! first optic chiasm (Drosophila) [Term] id: FBbt:00100527 name: adult inner optic chiasm giant glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Large glial cell of the inner optic chiasm of the adult optic lobe. It extends many cytoplasmic processes that enwraps fiber bundles at and near the sites of axonal intersection (Tix et al., 1997)." [FlyBase:FBrf0096428] synonym: "adult inner optic chiasm large glial cell" EXACT [] synonym: "giant glial cell" BROAD [] is_a: FBbt:00100517 ! adult optic lobe glial cell (Drosophila) relationship: part_of FBbt:00003922 ! second optic chiasm (Drosophila) [Term] id: FBbt:00100528 name: distal medulla glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell located proximal to the marginal glial cells. They elaborate long processes and wrap R cell axons in the medulla, which stop precisely at the base of expanded R8 and R7 growth cones. They also extend processes to the bottom of the lamina furrow (Poeck et al., 2001)." [FlyBase:FBrf0134808] subset: cur ! cur synonym: "medulla glial cell" RELATED [] synonym: "meg" RELATED [FlyBase:FBrf0134808] is_a: FBbt:00005738 ! medulla neuropil glial cell (Drosophila) [Term] id: FBbt:00100529 name: embryonic/larval carpet glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Very large glial cell of the embryonic/larval eye disc. There are two per eye disc, each covering approximately half of the differentiated part of the disc, with their nuclei generally being found at the posterior end of the imaginal disc, but always posterior to the differentiating neurons. The glial substrate formed by the carpet glia separates the basal-most migrating glia from the more apical ones (Silies et al., 2007)." [FlyBase:FBrf0201162, FlyBase:FBrf0210316] is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001256 ! CNS glial cell (Drosophila) relationship: part_of FBbt:00001768 ! eye disc (Drosophila) relationship: part_of FBbt:00001919 ! embryonic/larval central nervous system (Drosophila) [Term] id: FBbt:00100530 name: embryonic/larval eye disc marginal glial cell (Drosophila) namespace: fly_anatomy.ontology def: "Glial cell located at the margins of the eye disc, showing an elongated, clapboard-like shape (Silies et al., 2007; Edwards and Meinertzhagen, 2010)." [FlyBase:FBrf0201162, FlyBase:FBrf0210316] comment: DISAMBIGUATION: The eye disc marginal glial cells are not to be confused with the neuropil associated marginal glial cells located at the base of the lamina in the adult. is_a: FBbt:00001251 ! embryonic/larval glial cell (Drosophila) is_a: FBbt:00001252 ! surface associated glial cell (Drosophila) relationship: part_of FBbt:00001768 ! eye disc (Drosophila) relationship: part_of FBbt:00001911 ! embryonic/larval nervous system (Drosophila) [Term] id: FBbt:00100531 name: antennal lobe glomerulus DC4 (Drosophila) namespace: fly_anatomy.ontology def: "Dorsal glomerulus of the adult antennal lobe. It lies ventral to glomerulus DM3 and posterior to DC2 and DC1, and is innervated by coeloconic olfactory receptor neurons (Couto et al., 2005)." [FlyBase:FBrf0187305, FlyBase:FBrf0212455] is_a: FBbt:00067500 ! adult antennal lobe glomerulus (Drosophila) relationship: part_of FBbt:00007401 ! adult antennal lobe (Drosophila) [Term] id: FBbt:00100532 name: type I neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast that asymmetrically divides to produce a large daughter neuroblast cell and a smaller GMC cell that generates two daughter neurons." [FlyBase:FBrf0207387] is_a: CL:0000031 ! neuroblast [Term] id: FBbt:00100533 name: type II neuroblast (Drosophila) namespace: fly_anatomy.ontology def: "Neuroblast that asymmetrically divides to produce a large daughter neuroblast cell and a smaller GMC cell that can generate up to ten daughter neurons (Boone and Doe, 2008)." [FlyBase:FBrf0204899, FlyBase:FBrf0207387, FlyBase:FBrf0209927, PMID:18284664] is_a: CL:0000031 ! neuroblast [Term] id: FBbt:00100534 name: embryonic/larval dMP2 ILP7 neuron (Drosophila) namespace: fly_anatomy.ontology def: "A dMP2 neuron that expresses ILP7. All dMP2 neurons that survive in the larva (those in A6-9) are of this type. There are two per segment. All project to the hindgut. These projections have ILP7 positive swellings associated with circular visceral muscle. Their terminals are also sites of ILP7 localization." [FlyBase:FBrf0204880] synonym: "dMP2 ILP7 expressing neuron" EXACT [] is_a: CL:0000381 ! neurosecretory neuron is_a: FBbt:00001987 ! abdominal neuron (Drosophila) relationship: part_of FBbt:00000171 ! embryonic abdomen (Drosophila) relationship: part_of FBbt:00001746 ! larval abdomen (Drosophila) [Term] id: FBbt:00100535 name: dMP2 ILP7 neuron of abdominal segment 6 (Drosophila) namespace: fly_anatomy.ontology def: "dMP2 neuron located in embryonic/larval abdominal segment 6, and which expresses ILP7." [FlyBase:FBrf0204880] is_a: FBbt:00100534 ! embryonic/larval dMP2 ILP7 neuron (Drosophila) relationship: part_of FBbt:00000027 ! abdominal segment 6 (Drosophila) [Term] id: FBbt:00100536 name: dMP2 ILP7 neuron of abdominal segment 7 (Drosophila) namespace: fly_anatomy.ontology def: "dMP2 neuron located in embryonic/larval abdominal segment 7, and which expresses ILP7." [FlyBase:FBrf0204880] is_a: FBbt:00100534 ! embryonic/larval dMP2 ILP7 neuron (Drosophila) relationship: part_of FBbt:00000028 ! abdominal segment 7 (Drosophila) [Term] id: FBbt:00100537 name: dMP2 ILP7 neuron of abdominal segment 8 (Drosophila) namespace: fly_anatomy.ontology def: "dMP2 neuron located in embryonic/larval abdominal segment 8, and which expresses ILP7." [FlyBase:FBrf0204880] is_a: FBbt:00001995 ! A8 neuron (Drosophila) is_a: FBbt:00100534 ! embryonic/larval dMP2 ILP7 neuron (Drosophila) relationship: part_of FBbt:00000029 ! abdominal segment 8 (Drosophila) [Term] id: FBbt:00100538 name: dMP2 ILP7 neuron of abdominal segment 9 (Drosophila) namespace: fly_anatomy.ontology def: "dMP2 neuron located in embryonic/larval abdominal segment 9, and which expresses ILP7." [FlyBase:FBrf0204880] is_a: FBbt:00100534 ! embryonic/larval dMP2 ILP7 neuron (Drosophila) relationship: part_of FBbt:00000030 ! abdominal segment 9 (Drosophila) [Term] id: FBbt:00100539 name: adult dMP2 ILP7 neuron (Drosophila) namespace: fly_anatomy.ontology def: "An adult dMP2 neuron that expresses ILP7. There are two per abdominal segment, all projecting to the hindgut. These projections have ILP7 positive swellings and connect to the anterior intestines and the rectum. Their terminals are also sites of ILP7 localization (Miguel-Aliaga et al., 2008)." [FlyBase:FBrf0204880] comment: The adult dMP2 ILP7 neurons probably develops form the embryonic/larval dMP2 ILP7 neurons, though some remodelling occurs (Miguel-Aliaga et al., 2008). is_a: CL:0000381 ! neurosecretory neuron relationship: part_of FBbt:00004052 ! thoracico-abdominal ganglion (Drosophila) [Term] id: FBbt:00105220 name: lateral head epidermis (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00014203 ! lateral head epidermis primordium (Drosophila) relationship: part_of FBbt:00005743 ! embryonic dorsal pouch (Drosophila) [Term] id: FBbt:00105515 name: adult eye primordium late (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS-VH] subset: cur ! cur is_a: FBbt:10005249 ! adult eye primordium (Drosophila) is_a: UBERON:0001048 ! primordium relationship: develops_from FBbt:00005515 ! adult eye primordium early (Drosophila) [Term] id: FBbt:00110000 name: mushroom body alpha lobe segment (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of mushroom body perpendicular to the alpha lobe axis whose boundaries correspond to the boundaries of terminal arborization of mushroom body extrinsic neurons." [FBC:DOS, FlyBase:FBrf0205263] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00110001 name: mushroom body alpha' lobe segment (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of mushroom body perpendicular to the alpha' lobe axis whose boundaries correspond to the boundaries of terminal arborization of mushroom body extrinsic neurons." [FBC:DOS, FlyBase:FBrf0205263] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00110002 name: mushroom body gamma lobe segment (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of mushroom body perpendicular to the gamma lobe axis whose boundaries correspond to the boundaries of terminal arborization of mushroom body extrinsic neurons." [FBC:DOS, FlyBase:FBrf0205263] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003695 ! mushroom body gamma-lobe (Drosophila) [Term] id: FBbt:00110003 name: mushroom body beta lobe segment (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of mushroom body perpendicular to the beta lobe axis whose boundaries correspond to the boundaries of terminal arborization of mushroom body extrinsic neurons." [FBC:DOS, FlyBase:FBrf0205263] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003693 ! mushroom body beta-lobe (Drosophila) [Term] id: FBbt:00110004 name: mushroom body alpha lobe stratum (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of the mushroom body alpha lobe along its longitudinal axis." [FlyBase:FBrf0205263] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003690 ! mushroom body alpha-lobe (Drosophila) [Term] id: FBbt:00110005 name: mushroom body beta lobe stratum (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of the mushroom body beta lobe along its longitudinal axis." [FlyBase:FBrf0205263] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003693 ! mushroom body beta-lobe (Drosophila) [Term] id: FBbt:00110006 name: mushroom body alpha' lobe stratum (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of the mushroom body alpha' lobe along its longitudinal axis." [FlyBase:FBrf0205263] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003691 ! mushroom body alpha'-lobe (Drosophila) [Term] id: FBbt:00110008 name: mushroom body beta' lobe stratum (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of the mushroom body beta' lobe along its longitudinal axis." [FlyBase:FBrf0205263] is_a: FBbt:00040008 ! synaptic neuropil layer (Drosophila) relationship: part_of FBbt:00003694 ! mushroom body beta'-lobe (Drosophila) [Term] id: FBbt:00110009 name: mushroom body beta' lobe segment (Drosophila) namespace: fly_anatomy.ontology def: "Subdivision of mushroom body perpendicular to the beta' lobe axis whose boundaries correspond to the boundaries of terminal arborization of mushroom body extrinsic neurons." [FBC:DOS, FlyBase:FBrf0205263] is_a: FBbt:00040069 ! synaptic neuropil segment (Drosophila) relationship: part_of FBbt:00003694 ! mushroom body beta'-lobe (Drosophila) [Term] id: FBbt:01000119 name: anterior ectoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005427 ! ectoderm anlage (Drosophila) [Term] id: FBbt:01000122 name: posterior ectoderm anlage (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0007688 ! anlage relationship: part_of FBbt:00005427 ! ectoderm anlage (Drosophila) [Term] id: FBbt:01000595 name: abdominal ventral acute muscle 1 founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cluster II muscle founder cell" RELATED [FlyBase:FBrf0183937] is_a: FBbt:00005084 ! muscle founder cell (Drosophila) relationship: part_of FBbt:00000172 ! embryonic abdominal segment (Drosophila) [Term] id: FBbt:01000596 name: abdominal ventral acute muscle 2 founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cluster II muscle founder cell" RELATED [FlyBase:FBrf0183937] is_a: FBbt:00005084 ! muscle founder cell (Drosophila) relationship: part_of FBbt:00000172 ! embryonic abdominal segment (Drosophila) [Term] id: FBbt:01000597 name: abdominal ventral acute muscle 3 founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cluster II muscle founder cell" RELATED [FlyBase:FBrf0183937] is_a: FBbt:00005084 ! muscle founder cell (Drosophila) relationship: part_of FBbt:00000172 ! embryonic abdominal segment (Drosophila) [Term] id: FBbt:01000611 name: abdominal dorsal oblique muscle 3 founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cluster III muscle founder cell" RELATED [FlyBase:FBrf0183937] is_a: FBbt:00005084 ! muscle founder cell (Drosophila) relationship: part_of FBbt:00000172 ! embryonic abdominal segment (Drosophila) [Term] id: FBbt:01000615 name: abdominal lateral oblique muscle 1 founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cluster I muscle founder cell" RELATED [FlyBase:FBrf0183937] is_a: FBbt:00005084 ! muscle founder cell (Drosophila) relationship: part_of FBbt:00000172 ! embryonic abdominal segment (Drosophila) [Term] id: FBbt:01000625 name: abdominal dorsal transverse muscle 1 founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cluster III muscle founder cell" RELATED [FlyBase:FBrf0183937] is_a: FBbt:00005084 ! muscle founder cell (Drosophila) relationship: part_of FBbt:00000172 ! embryonic abdominal segment (Drosophila) [Term] id: FBbt:01000632 name: abdominal ventral transverse muscle 1 founder cell (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "cluster I muscle founder cell" RELATED [FlyBase:FBrf0183937] is_a: FBbt:00005084 ! muscle founder cell (Drosophila) relationship: part_of FBbt:00000172 ! embryonic abdominal segment (Drosophila) [Term] id: FBbt:01004296 name: sex comb tooth (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00004296 ! sex comb (Drosophila) [Term] id: FBbt:01004450 name: metathoracic tarsal bristle (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur is_a: FBbt:00004408 ! metathoracic bristle (Drosophila) is_a: FBbt:00004420 ! metathoracic leg sensillum (Drosophila) is_a: FBbt:00005182 ! microchaeta (Drosophila) relationship: part_of FBbt:00004712 ! metathoracic tarsal segment (Drosophila) [Term] id: FBbt:01004878 name: presumptive nurse cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:DOS] subset: RD ! terms for rd test ontology subset: cur ! cur is_a: FBbt:00057012 ! female germline cell (Drosophila) relationship: develops_from FBbt:00004877 ! cystocyte (Drosophila) relationship: part_of FBbt:00004866 ! germarium (Drosophila) [Term] id: FBbt:01005220 name: denticle row (Drosophila) namespace: fly_anatomy.ontology def: "Individual row of denticles in a denticle belt." [FlyBase:FBrf0089570] subset: cur ! cur is_a: FBbt:00007245 ! cuticular specialization (Drosophila) relationship: part_of FBbt:00005201 ! denticle belt (Drosophila) [Term] id: FBbt:01005747 name: embryonic ventral trunk epidermis (Drosophila) namespace: fly_anatomy.ontology subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00016007 ! ventral trunk epidermis primordium (Drosophila) relationship: part_of FBbt:00005747 ! embryonic ventral epidermis (Drosophila) [Term] id: FBbt:02000000 name: dorsal margin ommatidium (Drosophila) namespace: fly_anatomy.ontology def: "An ommatidial subtype located in a single row at the dorsal margin of the eye. This ommatidial subtype is specialised to detect the e-vector of polarized sunlight." [FlyBase:FBrf0180690] subset: cur ! cur is_a: UBERON:0000971 ! ommatidium [Term] id: FBbt:02000001 name: yellow ommatidium (Drosophila) namespace: fly_anatomy.ontology def: "Ommatidial subtype with stochastic distribution throughout the retina making up about 30% of all ommatidia. This ommatidial subtype is specialised to detect short wavelengths (UV + blue)." [FlyBase:FBrf0180690] subset: cur ! cur is_a: UBERON:0000971 ! ommatidium [Term] id: FBbt:02000002 name: pale ommatidium (Drosophila) namespace: fly_anatomy.ontology def: "Ommatidial subtype with stochastic distribution throughout the retina, making up about 70% of all ommatidia. This ommatidial subtype is specialised to detect longer wavelengths (UV + green) than yellow ommatidia." [FlyBase:FBrf0180690] subset: cur ! cur is_a: UBERON:0000971 ! ommatidium [Term] id: FBbt:02000003 name: photoreceptor cell R8 of yellow ommatidium (Drosophila) namespace: fly_anatomy.ontology def: "Any photoreceptor cell R8 (FBbt:00004227) that is part of some yellow ommatidium (FBbt:02000001)." [FBC:auto_generated_definition, FlyBase:FBrf0180690] subset: cur ! cur is_a: FBbt:00004227 ! photoreceptor cell R8 (Drosophila) relationship: part_of FBbt:02000001 ! yellow ommatidium (Drosophila) [Term] id: FBbt:02000004 name: photoreceptor cell R8 of pale ommatidium (Drosophila) namespace: fly_anatomy.ontology def: "Any photoreceptor cell R8 (FBbt:00004227) that is part of some pale ommatidium (FBbt:02000002)." [FBC:auto_generated_definition, FlyBase:FBrf0180690] subset: cur ! cur is_a: FBbt:00004227 ! photoreceptor cell R8 (Drosophila) relationship: part_of FBbt:02000002 ! pale ommatidium (Drosophila) [Term] id: FBbt:02000005 name: photoreceptor cell R7 of yellow ommatidium (Drosophila) namespace: fly_anatomy.ontology def: "Any photoreceptor cell R7 (FBbt:00004225) that is part of some yellow ommatidium (FBbt:02000001)." [FBC:auto_generated_definition, FlyBase:FBrf0180690] subset: cur ! cur is_a: FBbt:00004225 ! photoreceptor cell R7 (Drosophila) relationship: part_of FBbt:02000001 ! yellow ommatidium (Drosophila) [Term] id: FBbt:02000006 name: photoreceptor cell R7 of pale ommatidium (Drosophila) namespace: fly_anatomy.ontology def: "Any photoreceptor cell R7 (FBbt:00004225) that is part of some pale ommatidium (FBbt:02000002)." [FBC:auto_generated_definition, FlyBase:FBrf0180690] subset: cur ! cur is_a: FBbt:00004225 ! photoreceptor cell R7 (Drosophila) relationship: part_of FBbt:02000002 ! pale ommatidium (Drosophila) [Term] id: FBbt:10000445 name: primary segmental branch (Drosophila) namespace: fly_anatomy.ontology def: "A primary branch of the tracheal system." [FBC:DOS] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00017011 ! primary segmental branch primordium (Drosophila) relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: FBbt:10005220 name: embryonic secondary branch (Drosophila) namespace: fly_anatomy.ontology def: "A secondary branch of the tracheal system." [FBC:DOS] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:00017025 ! secondary branch/tracheole primordium (Drosophila) relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: FBbt:10005245 name: embryonic ventral longitudinal trunk namespace: fly_anatomy.ontology is_obsolete: true consider: FBbt:00000233 ! embryonic/larval lateral trunk (Drosophila) comment: Not clear what, if anything, this corresponds to. There are only two longitudinal trunks in the embryonic/larval tracheal system - dorsal and lateral. Perhaps could correspond to lateral tunk? (FBbt:00000233) subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur [Term] id: FBbt:10005247 name: excretory star cell (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00100318 ! somatic cell (Drosophila) relationship: develops_from FBbt:00017016 ! excretory star cell primordium (Drosophila) relationship: part_of UBERON:0001054 ! Malpighian tubule [Term] id: FBbt:10005248 name: spiracle primordium (Drosophila) namespace: fly_anatomy.ontology subset: cur ! cur synonym: "spiracle specific anlage" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of FBbt:00005569 ! presumptive embryonic/larval tracheal system (Drosophila) [Term] id: FBbt:10005249 name: adult eye primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FlyBase:FBrf0089570] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 Eye" RELATED [FBC:ds555] is_a: FBbt:00001648 ! embryonic imaginal precursor (Drosophila) [Term] id: FBbt:10005326 name: denticle field anlage (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "A DenBl" RELATED [FBC:ds555] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0007688 ! anlage relationship: develops_from FBbt:00005533 ! ventral epidermis primordium (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:10005329 name: posterior midgut primordium (Drosophila) namespace: fly_anatomy.ontology alt_id: FBbt:00000448 alt_id: FBbt:00005251 def: "The primordium that will develop into the anterior midgut of both larva and adult. This forms from the endodermal component of the amnioproctodeal invagination when it undergoes an epithelial-to-mesenchymal transition during stage 10 and so becomes distinct from the hindgut primordium with which it was previously contiguous. This primordium forms two lobes that extend laterally on either side of the yolk. During early stage 11, the interstitial cell precursors delaminate from the tip of the primordium. During stage 11/12 the precursors of the adult posterior midgut become distinct and the remaining primordium undergoes a mesenchymal to epithelial transition after which (during stage 12) fusion of anterior and posterior midgut primordia begins, forming the fused midgut primordium." [FlyBase:FBrf0089570] comment: This primordium may be temporally subdivided into the inclusive posterior midgut primordium, including adult midgut progenitors and the posterior midgut primordium proper, that contains only progenitors of the embryonic/larval midgut. However, the proper primordium exists only briefly during stage 12 and so we have chosen not to represent it in this ontology. Please use 'posterior midgut primordium' for both cases. subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur synonym: "P1 antEndoP" RELATED [FBC:ds555] synonym: "midgut posterior body" RELATED [] synonym: "postMGP2" RELATED [] synonym: "posterior midgut inclusive primordium" NARROW [] synonym: "posterior midgut proper primordium" NARROW [] is_a: FBbt:00005624 ! embryonic/larval midgut primordium (Drosophila) is_a: FBbt:00025995 ! posterior endoderm derivative (Drosophila) relationship: develops_from FBbt:00005560 ! posterior endoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) [Term] id: FBbt:10005336 name: esophageal visceral muscle primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00025999 ! head mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000127 ! head mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:10005342 name: cephalic vascular primordium (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: FBbt:00025999 ! head mesoderm derivative (Drosophila) relationship: develops_from FBbt:00000127 ! head mesoderm (Drosophila) relationship: part_of FBbt:00004450 ! late extended germ band embryo (Drosophila) relationship: part_of FBbt:00005331 ! dorsal closure embryo (Drosophila) [Term] id: FBbt:10005349 name: cephalic vascular remnant (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:10005342 ! cephalic vascular primordium (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:10005369 name: esophageal visceral muscle (Drosophila) namespace: fly_anatomy.ontology def: "." [FBC:VH] subset: EmbDevSlim ! EmbDevSlim subset: cur ! cur is_a: UBERON:0001062 ! anatomical entity relationship: develops_from FBbt:10005336 ! esophageal visceral muscle primordium (Drosophila) relationship: part_of UBERON:0008816 ! embryonic head [Term] id: FBbt:10005989 name: cystic bulge (Drosophila) namespace: fly_anatomy.ontology def: "Individualisation of spermatids takes place within this bulge - a membrane-cytoskeletal complex that resolves the shared membrane of the spermatid bundle into individual membranes encasing each spermatid and which progresses along the entire length of the spermatid bundle, from head to tail." [FlyBase:FBrf0064778, FlyBase:FBrf0158862] subset: cur ! cur synonym: "individualization complex" RELATED [] is_a: UBERON:0001062 ! anatomical entity relationship: part_of FBbt:00005320 ! individualization stage spermatid (Drosophila) [Term] id: EHDAA2:0000002 name: human embryo (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000922 ! embryo relationship: part_of UBERON:0004716 ! conceptus [Term] id: EHDAA2:0000003 name: human conceptus extraembryonic component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0000085 ! morula relationship: part_of UBERON:0000085 ! morula relationship: part_of UBERON:0004716 ! conceptus [Term] id: EHDAA2:0000032 name: 1st arch mandibular ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0007237 ! 1st arch mandibular component [Term] id: EHDAA2:0000033 name: 1st arch mandibular endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0007122 ! pharyngeal pouch 1 relationship: develops_from UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0007237 ! 1st arch mandibular component relationship: part_of UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0009722 ! entire pharyngeal arch endoderm [Term] id: EHDAA2:0000036 name: 1st arch mandibular mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme [Term] id: EHDAA2:0000039 name: 1st arch maxillary ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004108 ! frontonasal process epithelium (embryonic human) relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0007238 ! 1st arch maxillary component [Term] id: EHDAA2:0000040 name: 1st arch maxillary endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0007122 ! pharyngeal pouch 1 relationship: develops_from UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0007238 ! 1st arch maxillary component relationship: part_of UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0009722 ! entire pharyngeal arch endoderm [Term] id: EHDAA2:0000043 name: 1st arch maxillary mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme [Term] id: EHDAA2:0000046 name: 1st arch maxillary-mandibular groove ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0006846 ! groove relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: EHDAA2:0000048 name: future external epithelium of eardrum (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005872 ! 1st arch pharyngeal cleft relationship: part_of UBERON:0001691 ! external ear [Term] id: EHDAA2:0000058 name: 2nd arch pouch endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0003066 ! hyoid arch relationship: part_of UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0009722 ! entire pharyngeal arch endoderm [Term] id: EHDAA2:0000067 name: 2nd arch mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0005689 ! 2nd arch mesenchyme [Term] id: EHDAA2:0000082 name: 3rd arch mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0005690 ! 3rd arch mesenchyme [Term] id: EHDAA2:0000089 name: 4th arch pharyngeal groove ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0003115 ! pharyngeal arch 4 [Term] id: EHDAA2:0000097 name: 4th arch mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0005691 ! 4th arch mesenchyme [Term] id: EHDAA2:0000101 name: rhombencephalic vesicle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: EHDAA2:0000113 name: allantoic diverticulum (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0001504 ! extraembryonic allantois (embryonic human) relationship: part_of EHDAA2:0004588 ! internal anal region (embryonic human) relationship: part_of UBERON:0001008 ! excretory system [Term] id: EHDAA2:0000115 name: amnioblasts (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007573 ! migrating epithelium relationship: develops_from UBERON:0008780 ! inner cell mass derived epiblast relationship: part_of UBERON:0008780 ! inner cell mass derived epiblast [Term] id: EHDAA2:0000120 name: amniotic duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0000301 ! amniotic cavity relationship: part_of UBERON:0000301 ! amniotic cavity [Term] id: EHDAA2:0000121 name: anal pit (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003249 ! pit (embryonic human) [Term] id: EHDAA2:0000135 name: aortic valve leaflet mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004186 ! aortico-pulmonary spiral septum mesenchyme (embryonic human) relationship: part_of EHDAA2:0002165 ! valve mesenchyme (embryonic human) relationship: part_of UBERON:0002137 ! aortic valve [Term] id: EHDAA2:0000151 name: atlas cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0004005 ! atlas pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000240 ! cervical vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0000154 name: atrial region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000948 ! heart [Term] id: EHDAA2:0000156 name: auditory hillocks associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: develops_from UBERON:0009584 ! 1st arch mandibular mesenchyme relationship: part_of UBERON:0006208 ! auditory hillocks [Term] id: EHDAA2:0000157 name: auditory hillocks surface epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0006208 ! auditory hillocks [Term] id: EHDAA2:0000162 name: axis cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0004002 ! vertebra C6 pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000240 ! cervical vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0000169 name: mitral valve leaflet endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0002062 ! endocardial cushion relationship: part_of UBERON:0002135 ! mitral valve relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0000170 name: early biliary bud (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0009550 ! endoderm of foregut-midgut junction relationship: part_of UBERON:0002423 ! hepatobiliary system relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: EHDAA2:0000177 name: yolk sac blood islands (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004700 ! developing mesenchymal structure (embryonic human) relationship: develops_from UBERON:0003316 ! mesenchyme of yolk sac relationship: part_of UBERON:0003316 ! mesenchyme of yolk sac [Term] id: EHDAA2:0000185 name: brain venous system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000467 ! anatomical system relationship: develops_from EHDAA2:0004541 ! head and neck venous capillary plexus (embryonic human) relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0009141 ! craniocervical region vein [Term] id: EHDAA2:0000207 name: caecum associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009478 ! associated mesenchyme of midgut relationship: part_of UBERON:0001153 ! caecum [Term] id: EHDAA2:0000214 name: cardiogenic splanchnopleure (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of UBERON:0004873 ! splanchnopleure [Term] id: EHDAA2:0000226 name: CNS cranial ganglion (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0003339 ! ganglion of central nervous system [Term] id: EHDAA2:0000230 name: early cerebellum primordium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001048 ! primordium relationship: develops_from EHDAA2:0004325 ! early rhombomere 01 lateral wall (embryonic human) relationship: part_of EHDAA2:0004325 ! early rhombomere 01 lateral wall (embryonic human) [Term] id: EHDAA2:0000231 name: cerebellum primordium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0010092 ! future metencephalon [Term] id: EHDAA2:0000235 name: paleopallium mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001986 ! telencephalon mantle layer (embryonic human) relationship: part_of EHDAA2:0004663 ! paleopallium (embryonic human) [Term] id: EHDAA2:0000236 name: paleopallium cortex marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001988 ! telencephalon marginal layer (embryonic human) relationship: part_of EHDAA2:0004663 ! paleopallium (embryonic human) [Term] id: EHDAA2:0000237 name: paleopallium cortex ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001996 ! telencephalon ventricular layer (embryonic human) relationship: part_of EHDAA2:0004663 ! paleopallium (embryonic human) [Term] id: EHDAA2:0000240 name: cervical vertebral cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: EHDAA2:0000241 name: cervical vertebral pre-cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: EHDAA2:0000244 name: left ventricle chordae tendinae (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007475 ! matrix-based tissue relationship: develops_from UBERON:0009713 ! endocardium of left ventricle relationship: part_of EHDAA2:0002178 ! left ventricle (embryonic human) relationship: part_of UBERON:0002135 ! mitral valve relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0000254 name: clavicle bone primordium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003258 ! bone condensation (embryonic human) is_a: UBERON:0002514 ! intramembranous bone relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: EHDAA2:0000259 name: coccygeal skeleton (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: EHDAA2:0000260 name: coccygeal vertebral cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of EHDAA2:0000259 ! coccygeal skeleton (embryonic human) [Term] id: EHDAA2:0000265 name: cocycgeal vertebral pre-cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of EHDAA2:0000259 ! coccygeal skeleton (embryonic human) [Term] id: EHDAA2:0000270 name: primitive heart tube common atrial chamber endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001981 ! blood vessel relationship: develops_from UBERON:0002063 ! sinus venosus relationship: part_of EHDAA2:0000426 ! primitive heart tube endocardium (embryonic human) [Term] id: EHDAA2:0000277 name: left atrium auricular region endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000284 ! left atrium future auricular region endocardium (embryonic human) relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0006630 ! left atrium auricular region [Term] id: EHDAA2:0000281 name: left atrium endocardiium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000270 ! primitive heart tube common atrial chamber endocardium (embryonic human) relationship: part_of UBERON:0002079 ! left atrium relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0000283 name: left atrium future auricular region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002079 ! left atrium [Term] id: EHDAA2:0000284 name: left atrium future auricular region endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000281 ! left atrium endocardiium (embryonic human) relationship: part_of EHDAA2:0000283 ! left atrium future auricular region (embryonic human) relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0000285 name: left atrium future auricular region heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from UBERON:0003380 ! cardiac muscle of left atrium relationship: part_of EHDAA2:0000283 ! left atrium future auricular region (embryonic human) relationship: part_of UBERON:0002349 ! myocardium [Term] id: EHDAA2:0000292 name: right atrium auricular region endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000299 ! right atrium future auricular region endocardium (embryonic human) relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0006631 ! right atrium auricular region [Term] id: EHDAA2:0000298 name: right atrium future auricular region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002078 ! right atrium [Term] id: EHDAA2:0000299 name: right atrium future auricular region endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0009129 ! right atrium endocardium relationship: part_of EHDAA2:0000298 ! right atrium future auricular region (embryonic human) relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0000309 name: common hepatic artery cystic branch (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0005436 ! common hepatic artery relationship: part_of UBERON:0005436 ! common hepatic artery [Term] id: EHDAA2:0000317 name: cornea posterior epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000487 ! simple squamous epithelium relationship: develops_from EHDAA2:0000318 ! corneal stroma mesenchyme (embryonic human) relationship: part_of UBERON:0000964 ! cornea relationship: part_of UBERON:0005638 ! anterior chamber epithelium [Term] id: EHDAA2:0000318 name: corneal stroma mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0003314 ! eye mesenchyme relationship: part_of UBERON:0000964 ! cornea [Term] id: EHDAA2:0000321 name: costal pre-cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: EHDAA2:0000335 name: polar trophectoderm cytotrophoblast (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0000486 ! multilaminar epithelium relationship: develops_from UBERON:0006280 ! polar trophectoderm relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0000336 name: mural trophectoderm cytotrophoblast (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0000486 ! multilaminar epithelium relationship: develops_from UBERON:0006265 ! mural trophectoderm relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0000338 name: degenerating mesonephros (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003127 ! apoptosing developing anatomical structure (embryonic human) relationship: develops_from UBERON:0000080 ! mesonephros relationship: part_of UBERON:0001008 ! excretory system [Term] id: EHDAA2:0000341 name: dermomyotome 01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001849 ! somite 01 (embryonic human) relationship: part_of EHDAA2:0003444 ! head dermomyotome group (embryonic human) [Term] id: EHDAA2:0000342 name: dermomyotome 02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001850 ! somite 02 (embryonic human) relationship: part_of EHDAA2:0003444 ! head dermomyotome group (embryonic human) [Term] id: EHDAA2:0000343 name: dermomyotome 03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001851 ! somite 03 (embryonic human) relationship: part_of EHDAA2:0003444 ! head dermomyotome group (embryonic human) [Term] id: EHDAA2:0000344 name: dermomyotome 04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001852 ! somite 04 (embryonic human) relationship: part_of EHDAA2:0003444 ! head dermomyotome group (embryonic human) [Term] id: EHDAA2:0000345 name: dermomyotome 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001853 ! somite 05 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000346 name: dermomyotome 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001854 ! somite 06 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000347 name: dermomyotome 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001855 ! somite 07 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000348 name: dermomyotome 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001856 ! somite 08 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000349 name: dermomyotome 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001857 ! somite 09 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000350 name: dermomyotome 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001858 ! somite 10 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000351 name: dermomyotome 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001859 ! somite 11 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000352 name: dermomyotome 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001860 ! somite 12 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000353 name: dermomyotome 13 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001861 ! somite 13 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000354 name: dermomyotome 14 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001862 ! somite 14 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000355 name: dermomyotome 15 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001863 ! somite 15 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000356 name: dermomyotome 16 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001864 ! somite 16 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000357 name: dermomyotome 17 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001865 ! somite 17 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000358 name: dermomyotome 18 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001866 ! somite 18 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000359 name: dermomyotome 19 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001867 ! somite 19 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000360 name: dermomyotome 20 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001868 ! somite 20 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000361 name: dermomyotome 21 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001869 ! somite 21 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000362 name: dermomyotome 22 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001870 ! somite 22 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000363 name: dermomyotome 23 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001871 ! somite 23 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000364 name: dermomyotome 24 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001872 ! somite 24 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000365 name: dermomyotome 25 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001873 ! somite 25 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000366 name: dermomyotome 26 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001874 ! somite 26 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000367 name: dermomyotome 27 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001875 ! somite 27 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000368 name: dermomyotome 28 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001876 ! somite 28 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000369 name: dermomyotome 29 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001877 ! somite 29 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000370 name: dermomyotome 30 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001878 ! somite 30 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000371 name: dermomyotome 31 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001879 ! somite 31 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000372 name: dermomyotome 32 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001880 ! somite 32 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000373 name: dermomyotome 33 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001881 ! somite 33 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000374 name: dermomyotome 34 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001882 ! somite 34 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000375 name: dermomyotome 35 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001883 ! somite 35 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000376 name: dermomyotome 36 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001884 ! somite 36 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000377 name: dermomyotome 37 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001885 ! somite 37 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000378 name: dermomyotome 38 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001886 ! somite 38 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000379 name: dermomyotome 39 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0004290 ! dermomyotome relationship: develops_from EHDAA2:0001887 ! somite 39 (embryonic human) relationship: part_of EHDAA2:0003426 ! trunk and cervical dermomyotome group (embryonic human) [Term] id: EHDAA2:0000389 name: diencephalon future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000390 ! diencephalon primary meninx future arachnoid layer (embryonic human) relationship: part_of EHDAA2:0004316 ! future arachnoid layer (embryonic human) relationship: part_of UBERON:0003290 ! meninx of diencephalon [Term] id: EHDAA2:0000390 name: diencephalon primary meninx future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000401 ! diencephalon primary meninx (embryonic human) relationship: part_of EHDAA2:0000401 ! diencephalon primary meninx (embryonic human) relationship: part_of EHDAA2:0004316 ! future arachnoid layer (embryonic human) [Term] id: EHDAA2:0000391 name: diencephalon future dura mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000392 ! diencephalon primary meninx future dura mater (embryonic human) relationship: part_of UBERON:0003290 ! meninx of diencephalon relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0000392 name: diencephalon primary meninx future dura mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of EHDAA2:0000401 ! diencephalon primary meninx (embryonic human) relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0000393 name: diencephalon future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of EHDAA2:0004315 ! future subarachnoid space (embryonic human) relationship: part_of UBERON:0003290 ! meninx of diencephalon [Term] id: EHDAA2:0000394 name: diencephalon primary meninx future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of EHDAA2:0000401 ! diencephalon primary meninx (embryonic human) relationship: part_of EHDAA2:0004315 ! future subarachnoid space (embryonic human) [Term] id: EHDAA2:0000398 name: diencephalon marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004465 ! diencephalon D1 mantle layer (embryonic human) relationship: develops_from EHDAA2:0004466 ! diencephalon D2 mantle layer (embryonic human) relationship: part_of UBERON:0005591 ! diencephalon lateral wall [Term] id: EHDAA2:0000401 name: diencephalon primary meninx (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007529 ! loose mesenchyme tissue relationship: part_of EHDAA2:0004453 ! primary meninx (embryonic human) relationship: part_of UBERON:0003290 ! meninx of diencephalon [Term] id: EHDAA2:0000403 name: diencephalon ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004464 ! diencephalon D1 ventricular layer (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of UBERON:0005591 ! diencephalon lateral wall [Term] id: EHDAA2:0000405 name: digital region apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0006872 ! handplate apical ectodermal ridge relationship: part_of UBERON:0002389 ! hand digit [Term] id: EHDAA2:0000426 name: primitive heart tube endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0004067 ! endocardiogenic tissue (embryonic human) relationship: part_of UBERON:0005498 ! primitive heart tube [Term] id: EHDAA2:0000427 name: primitive heart tube myocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004139 ! cardiogenic plate relationship: part_of UBERON:0005498 ! primitive heart tube [Term] id: EHDAA2:0000438 name: early endolymphatic appendage (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0003051 ! ear vesicle [Term] id: EHDAA2:0000447 name: epiploic foramen of Winslow (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004111 ! anatomical conduit [Term] id: EHDAA2:0000449 name: epithalamus mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004466 ! diencephalon D2 mantle layer (embryonic human) relationship: part_of UBERON:0001899 ! epithalamus [Term] id: EHDAA2:0000450 name: epithalamus ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of UBERON:0001899 ! epithalamus [Term] id: EHDAA2:0000455 name: erector spinae pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0003897 ! axial muscle [Term] id: EHDAA2:0000458 name: extensor leg muscle group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0004466 ! musculature of leg [Term] id: EHDAA2:0000459 name: extensor pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0001499 ! muscle of arm [Term] id: EHDAA2:0000467 name: external intercostal pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of EHDAA2:0000843 ! intercostal pre-muscle mass (embryonic human) [Term] id: EHDAA2:0000470 name: external oblique pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0002461 ! anterior abdominal wall muscle [Term] id: EHDAA2:0000471 name: extraembryonic arterial system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of EHDAA2:0000478 ! extraembryonic vascular system (embryonic human) [Term] id: EHDAA2:0000472 name: extraembryonic cavities (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0000478 name: extraembryonic vascular system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0000479 name: extraembryonic venous system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of EHDAA2:0000478 ! extraembryonic vascular system (embryonic human) [Term] id: EHDAA2:0000494 name: acoustico-facial VII-VIII ganglion complex (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from EHDAA2:0001554 ! pro-rhombomere b neural crest (embryonic human) relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of EHDAA2:0000226 ! CNS cranial ganglion (embryonic human) [Term] id: EHDAA2:0000501 name: female labial swelling (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: EHDAA2:0000502 name: female nephric duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0003074 ! mesonephric duct relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: EHDAA2:0000503 name: female nephric duct lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005082 ! tube lumen [Term] id: EHDAA2:0000504 name: female paramesonephric duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0004048 ! early paramesonephric duct (embryonic human) relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: EHDAA2:0000505 name: female primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: EHDAA2:0004054 ! reproductive cell population (embryonic human) relationship: develops_from EHDAA2:0001536 ! indifferent gonad primordial germ cells (embryonic human) relationship: part_of UBERON:0000992 ! female gonad [Term] id: EHDAA2:0000509 name: fibula pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003468 ! lower leg mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme [Term] id: EHDAA2:0000512 name: finger 1 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005227 ! hand digit epithelium relationship: part_of UBERON:0001463 ! hand digit 1 [Term] id: EHDAA2:0000513 name: finger 1 mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0005257 ! hand digit mesenchyme relationship: part_of UBERON:0001463 ! hand digit 1 [Term] id: EHDAA2:0000514 name: finger 1 metacarpus cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0000515 ! finger 1 metacarpus pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000513 ! finger 1 mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand [Term] id: EHDAA2:0000515 name: finger 1 metacarpus pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of EHDAA2:0000513 ! finger 1 mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand [Term] id: EHDAA2:0000516 name: finger 1 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of EHDAA2:0000513 ! finger 1 mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand [Term] id: EHDAA2:0000520 name: finger 2 metacarpus cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0000521 ! finger 2 metacarpus pre-cartilage condensation (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005692 ! finger 2 mesenchyme [Term] id: EHDAA2:0000521 name: finger 2 metacarpus pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005692 ! finger 2 mesenchyme [Term] id: EHDAA2:0000522 name: finger 2 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005692 ! finger 2 mesenchyme [Term] id: EHDAA2:0000526 name: finger 3 metacarpus cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0000527 ! finger 3 metacarpus pre-cartilage condensation (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005693 ! finger 3 mesenchyme [Term] id: EHDAA2:0000527 name: finger 3 metacarpus pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005693 ! finger 3 mesenchyme [Term] id: EHDAA2:0000528 name: finger 3 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005693 ! finger 3 mesenchyme [Term] id: EHDAA2:0000532 name: finger 4 metacarpus cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0000533 ! finger 4 metacarpus pre-cartilage condensation (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005694 ! finger 4 mesenchyme [Term] id: EHDAA2:0000533 name: finger 4 metacarpus pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005694 ! finger 4 mesenchyme [Term] id: EHDAA2:0000534 name: finger 4 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005694 ! finger 4 mesenchyme [Term] id: EHDAA2:0000538 name: finger 5 metacarpus cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0000539 ! finger 5 metacarpus pre-cartilage condensation (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005695 ! finger 5 mesenchyme [Term] id: EHDAA2:0000539 name: finger 5 metacarpus pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005695 ! finger 5 mesenchyme [Term] id: EHDAA2:0000540 name: finger 5 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003472 ! handplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001442 ! skeleton of hand relationship: part_of UBERON:0005695 ! finger 5 mesenchyme [Term] id: EHDAA2:0000541 name: first polar body (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0000542 name: flexor leg muscle group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0004466 ! musculature of leg [Term] id: EHDAA2:0000543 name: flexor pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0001499 ! muscle of arm [Term] id: EHDAA2:0000558 name: lower foregut region associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of EHDAA2:0004068 ! lower foregut region (embryonic human) [Term] id: EHDAA2:0000561 name: foregut duodenum associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000558 ! lower foregut region associated mesenchyme (embryonic human) relationship: part_of UBERON:0003286 ! duodenum of foregut [Term] id: EHDAA2:0000574 name: foregut-midgut junction gland (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: EHDAA2:0000578 name: frontonasal process (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0004066 ! frontonasal prominence [Term] id: EHDAA2:0000592 name: brain neural ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0002346 ! neurectoderm relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: EHDAA2:0000597 name: future crura (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0001286 ! oesophagus associated mesenchyme (embryonic human) relationship: part_of UBERON:0010084 ! future diaphragm [Term] id: EHDAA2:0000601 name: future diencephalon D2 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000665 ! prosencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0004427 ! future diencephalon D2 neuromere (embryonic human) [Term] id: EHDAA2:0000602 name: future diencephalon D2 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000665 ! prosencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0004427 ! future diencephalon D2 neuromere (embryonic human) [Term] id: EHDAA2:0000605 name: future diencephalon D2 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000665 ! prosencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0004427 ! future diencephalon D2 neuromere (embryonic human) [Term] id: EHDAA2:0000612 name: inferior vena cava post-hepatic part (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0006296 ! subcardinal vein relationship: develops_from UBERON:0006300 ! supracardinal vein relationship: part_of UBERON:0001072 ! inferior vena cava [Term] id: EHDAA2:0000613 name: inferior vena cava pre-hepatic part (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0001728 ! hepato-cardiac vein right (embryonic human) relationship: part_of UBERON:0001072 ! inferior vena cava [Term] id: EHDAA2:0000615 name: mesencephalon (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "Midbrain before the development of nerve cells (staging from O'Rahilly & Muller)." [EHDAA2:JB] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000955 ! brain [Term] id: EHDAA2:0000616 name: mesencephalon floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0000615 ! mesencephalon (embryonic human) [Term] id: EHDAA2:0000617 name: mesencephalon lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000620 ! mesencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0000615 ! mesencephalon (embryonic human) [Term] id: EHDAA2:0000620 name: mesencephalon neural fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0000615 ! mesencephalon (embryonic human) [Term] id: EHDAA2:0000621 name: mesencephalon roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000620 ! mesencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0000615 ! mesencephalon (embryonic human) [Term] id: EHDAA2:0000625 name: future metencephalon alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of EHDAA2:0000626 ! future metencephalon mantle layer (embryonic human) [Term] id: EHDAA2:0000626 name: future metencephalon mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000635 ! future metencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0000635 ! future metencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000627 name: future metencephalon marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: part_of EHDAA2:0000635 ! future metencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000628 name: future metencephalon ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: part_of EHDAA2:0000635 ! future metencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000629 name: future metencephalon basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of EHDAA2:0000626 ! future metencephalon mantle layer (embryonic human) [Term] id: EHDAA2:0000634 name: future metencephalon floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: part_of UBERON:0010092 ! future metencephalon [Term] id: EHDAA2:0000635 name: future metencephalon lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of UBERON:0010092 ! future metencephalon [Term] id: EHDAA2:0000637 name: future metencephalon roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: part_of UBERON:0010092 ! future metencephalon [Term] id: EHDAA2:0000638 name: future metencephalon sulcus limitans (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0006846 ! groove [Term] id: EHDAA2:0000642 name: future myelencephalon alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of EHDAA2:0000647 ! future myelencephalon mantle layer (embryonic human) [Term] id: EHDAA2:0000647 name: future myelencephalon mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of EHDAA2:0000651 ! future myelencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000648 name: future myelencephalon marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: part_of EHDAA2:0000651 ! future myelencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000649 name: future myelencephalon ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: part_of EHDAA2:0000651 ! future myelencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000650 name: future myelencephalon floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: part_of UBERON:0010096 ! future myelencephalon [Term] id: EHDAA2:0000651 name: future myelencephalon lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of UBERON:0010096 ! future myelencephalon [Term] id: EHDAA2:0000652 name: future myelencephalon roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: part_of UBERON:0010096 ! future myelencephalon [Term] id: EHDAA2:0000653 name: future myelencephalon sulcus limitans (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0006846 ! groove relationship: part_of EHDAA2:0000651 ! future myelencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000662 name: future telencephalon floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000663 ! future telencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0004424 ! future telencephalon (embryonic human) [Term] id: EHDAA2:0000663 name: future telencephalon lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000665 ! prosencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0004424 ! future telencephalon (embryonic human) [Term] id: EHDAA2:0000665 name: prosencephalon neural fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of UBERON:0006240 ! future forebrain [Term] id: EHDAA2:0000672 name: future sigmoid sinus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0006282 ! primary head vein relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: EHDAA2:0000677 name: early spinal cord meningeal covering (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of UBERON:0002360 ! meninx relationship: part_of UBERON:0003292 ! meninx of spinal cord [Term] id: EHDAA2:0000690 name: hindbrain future tentorium cerebelli (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000753 ! hindbrain primary meninx future dura mater (embryonic human) relationship: part_of UBERON:0003291 ! meninx of hindbrain relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0000691 name: hindbrain primary meninx future tentorium cerebelli (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0000693 name: dorsal thalamus mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004466 ! diencephalon D2 mantle layer (embryonic human) relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: EHDAA2:0000694 name: dorsal thalamus marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000693 ! dorsal thalamus mantle layer (embryonic human) relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: EHDAA2:0000695 name: dorsal thalamus ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: EHDAA2:0000715 name: gluteal muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002036 ! striated muscle tissue relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0004470 ! musculature of pelvic girdle [Term] id: EHDAA2:0000717 name: indifferent gonad associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0005323 ! mesonephric mesenchyme relationship: part_of UBERON:0009117 ! indifferent gonad [Term] id: EHDAA2:0000718 name: indifferent gonad mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from EHDAA2:0004047 ! mesonephros mesothelium (embryonic human) relationship: part_of UBERON:0009117 ! indifferent gonad [Term] id: EHDAA2:0000730 name: handplate epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0003372 ! forelimb bud ectoderm relationship: part_of UBERON:0002398 ! hand [Term] id: EHDAA2:0000737 name: head somite group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: develops_from UBERON:0009617 ! head paraxial mesenchyme relationship: part_of UBERON:0009617 ! head paraxial mesenchyme [Term] id: EHDAA2:0000750 name: hindbrain future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000751 ! hindbrain primary meninx future arachnoid layer (embryonic human) relationship: part_of EHDAA2:0004316 ! future arachnoid layer (embryonic human) relationship: part_of UBERON:0003291 ! meninx of hindbrain [Term] id: EHDAA2:0000751 name: hindbrain primary meninx future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0004316 ! future arachnoid layer (embryonic human) [Term] id: EHDAA2:0000752 name: hindbrain future dura mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000753 ! hindbrain primary meninx future dura mater (embryonic human) relationship: part_of UBERON:0003291 ! meninx of hindbrain relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0000753 name: hindbrain primary meninx future dura mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0000754 name: hindbrain future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of EHDAA2:0004315 ! future subarachnoid space (embryonic human) relationship: part_of UBERON:0003291 ! meninx of hindbrain [Term] id: EHDAA2:0000755 name: hindbrain primary meninx future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: develops_from EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0000773 ! hindbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0004315 ! future subarachnoid space (embryonic human) [Term] id: EHDAA2:0000758 name: early isthmus floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0004349 ! isthmus primordium floor plate (embryonic human) relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary [Term] id: EHDAA2:0000759 name: early isthmus lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary [Term] id: EHDAA2:0000760 name: early isthmus mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004351 ! isthmus primordium lateral wall (embryonic human) relationship: part_of EHDAA2:0000759 ! early isthmus lateral wall (embryonic human) [Term] id: EHDAA2:0000761 name: early isthmus marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004351 ! isthmus primordium lateral wall (embryonic human) relationship: part_of EHDAA2:0000627 ! future metencephalon marginal layer (embryonic human) relationship: part_of EHDAA2:0000759 ! early isthmus lateral wall (embryonic human) [Term] id: EHDAA2:0000765 name: early isthmus roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004350 ! isthmus primordium roof plate (embryonic human) relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary [Term] id: EHDAA2:0000766 name: early isthmus ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004351 ! isthmus primordium lateral wall (embryonic human) relationship: part_of EHDAA2:0000628 ! future metencephalon ventricular layer (embryonic human) relationship: part_of EHDAA2:0000759 ! early isthmus lateral wall (embryonic human) [Term] id: EHDAA2:0000771 name: future hindbrain pia mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0002361 ! pia mater relationship: part_of UBERON:0010091 ! future hindbrain meninges [Term] id: EHDAA2:0000773 name: hindbrain primary meninx (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of EHDAA2:0004453 ! primary meninx (embryonic human) relationship: part_of UBERON:0003291 ! meninx of hindbrain [Term] id: EHDAA2:0000775 name: hindbrain venous sinus group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0005720 ! hindbrain venous system [Term] id: EHDAA2:0000793 name: hyoid cartilage (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010254 ! 2nd arch mesenchyme from neural crest relationship: develops_from UBERON:0010255 ! 3rd arch mesenchyme from neural crest relationship: part_of UBERON:0001557 ! upper respiratory tract relationship: part_of UBERON:0004288 ! skeleton [Term] id: EHDAA2:0000795 name: hyoid pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0000067 ! 2nd arch mesenchyme from head mesenchyme (embryonic human) relationship: part_of UBERON:0002376 ! muscle of head [Term] id: EHDAA2:0000800 name: hypopharyngeal eminence associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0005690 ! 3rd arch mesenchyme relationship: develops_from UBERON:0005691 ! 4th arch mesenchyme relationship: part_of UBERON:0010057 ! hypopharyngeal eminence [Term] id: EHDAA2:0000801 name: hypopharyngeal eminence epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005665 ! 3rd arch endoderm relationship: develops_from UBERON:0007125 ! pharyngeal pouch 4 relationship: part_of UBERON:0010057 ! hypopharyngeal eminence [Term] id: EHDAA2:0000803 name: hypothalamus mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004466 ! diencephalon D2 mantle layer (embryonic human) relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: EHDAA2:0000804 name: hypothalamus marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000803 ! hypothalamus mantle layer (embryonic human) relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: EHDAA2:0000805 name: hypothalamus ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: EHDAA2:0000806 name: iliac anastomosis (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0006296 ! subcardinal vein relationship: develops_from UBERON:0009140 ! right subcardinal vein relationship: part_of UBERON:0004344 ! cardinal vein [Term] id: EHDAA2:0000808 name: iliac cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from UBERON:0006247 ! iliac cartilage condensation relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle [Term] id: EHDAA2:0000810 name: iliac sac (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0005610 ! iliac vein relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: EHDAA2:0000823 name: inferior parathyroid associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010255 ! 3rd arch mesenchyme from neural crest relationship: part_of UBERON:0006755 ! inferior parathyroid gland [Term] id: EHDAA2:0000824 name: inferior parathyroid epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000486 ! multilaminar epithelium relationship: develops_from UBERON:0010025 ! dorsal part of pharyngeal pouch 3 relationship: part_of UBERON:0006755 ! inferior parathyroid gland [Term] id: EHDAA2:0000833 name: otic capsule pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001346 ! otocyst pre-vestibular region associated mesenchyme (embryonic human) relationship: develops_from EHDAA2:0004123 ! early endolymphatic appendage associated mesenchyme (embryonic human) relationship: part_of UBERON:0001846 ! internal ear [Term] id: EHDAA2:0000839 name: interatrial septum foramen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004111 ! anatomical conduit [Term] id: EHDAA2:0000843 name: intercostal pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0003897 ! axial muscle [Term] id: EHDAA2:0000845 name: interdigital region between fingers 1 and 2 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000730 ! handplate epithelium (embryonic human) relationship: part_of UBERON:0006026 ! interdigital region between fingers 1 and 2 [Term] id: EHDAA2:0000848 name: interdigital region between fingers 2 and 3 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000730 ! handplate epithelium (embryonic human) relationship: part_of UBERON:0006029 ! interdigital region between fingers 2 and 3 [Term] id: EHDAA2:0000851 name: interdigital region between fingers 3 and 4 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000730 ! handplate epithelium (embryonic human) relationship: part_of UBERON:0006032 ! interdigital region between fingers 3 and 4 [Term] id: EHDAA2:0000854 name: interdigital region between fingers 4 and 5 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000730 ! handplate epithelium (embryonic human) relationship: part_of UBERON:0006035 ! interdigital region between fingers 4 and 5 [Term] id: EHDAA2:0000857 name: interdigital region between toes 1 and 2 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0006038 ! interdigital region between toes 1 and 2 [Term] id: EHDAA2:0000860 name: interdigital region between toes 2 and 3 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0006041 ! interdigital region between toes 2 and 3 [Term] id: EHDAA2:0000863 name: interdigital region between toes 3 and 4 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0006044 ! interdigital region between toes 3 and 4 [Term] id: EHDAA2:0000866 name: interdigital region between toes 4 and 5 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0006047 ! interdigital region between toes 4 and 5 [Term] id: EHDAA2:0000869 name: intermaxillary process mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0009204 ! medial nasal process mesenchyme relationship: develops_from UBERON:0009205 ! lateral nasal process mesenchyme relationship: part_of UBERON:0009714 ! intermaxillary process [Term] id: EHDAA2:0000870 name: intermaxillary process surface ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005233 ! medial-nasal process ectoderm relationship: develops_from UBERON:0009206 ! lateral nasal process surface ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0009714 ! intermaxillary process [Term] id: EHDAA2:0000876 name: internal intercostal pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of EHDAA2:0000843 ! intercostal pre-muscle mass (embryonic human) [Term] id: EHDAA2:0000894 name: jugular sac (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0009771 ! precardinal vein left relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: EHDAA2:0000912 name: lateral lingual swelling associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009584 ! 1st arch mandibular mesenchyme relationship: part_of UBERON:0006757 ! lateral lingual swelling [Term] id: EHDAA2:0000915 name: lateral migration pathway NC-derived mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007530 ! migrating mesenchyme population relationship: develops_from EHDAA2:0001251 ! trunk neural ectoderm (embryonic human) relationship: develops_from UBERON:0007214 ! mesenchyme derived from trunk neural crest relationship: part_of UBERON:0007214 ! mesenchyme derived from trunk neural crest [Term] id: EHDAA2:0000923 name: myelencephalon lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000651 ! future myelencephalon lateral wall (embryonic human) relationship: part_of UBERON:0005290 ! myelencephalon [Term] id: EHDAA2:0000924 name: myelencephalon alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0000930 ! myelencephalon mantle layer (embryonic human) [Term] id: EHDAA2:0000926 name: myelencephalon marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000648 ! future myelencephalon marginal layer (embryonic human) relationship: part_of EHDAA2:0000923 ! myelencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000927 name: myelencephalon ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0000649 ! future myelencephalon ventricular layer (embryonic human) relationship: part_of EHDAA2:0000923 ! myelencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000929 name: myelencephalon basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0009579 ! myelencephalon basal plate relationship: part_of EHDAA2:0000930 ! myelencephalon mantle layer (embryonic human) [Term] id: EHDAA2:0000930 name: myelencephalon mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of EHDAA2:0000923 ! myelencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0000933 name: latissimus dorsi pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0008713 ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: EHDAA2:0000937 name: extraembryonic umbilical artery left (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001637 ! artery relationship: develops_from EHDAA2:0003242 ! connecting stalk blood islands (embryonic human) relationship: part_of EHDAA2:0000471 ! extraembryonic arterial system (embryonic human) relationship: part_of UBERON:0007807 ! connecting stalk blood vessels [Term] id: EHDAA2:0000938 name: extraembryonic umbilical vein left (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0003242 ! connecting stalk blood islands (embryonic human) relationship: part_of EHDAA2:0000479 ! extraembryonic venous system (embryonic human) relationship: part_of UBERON:0007807 ! connecting stalk blood vessels [Term] id: EHDAA2:0000939 name: extraembryonic vitelline artery left (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001637 ! artery relationship: develops_from EHDAA2:0004510 ! angioblast clusters (embryonic human) relationship: part_of EHDAA2:0000471 ! extraembryonic arterial system (embryonic human) [Term] id: EHDAA2:0000940 name: extraembryonic vitelline vein left (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004510 ! angioblast clusters (embryonic human) relationship: part_of EHDAA2:0000479 ! extraembryonic venous system (embryonic human) [Term] id: EHDAA2:0000942 name: hepato-cardiac vein left (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0005460 ! left vitelline vein relationship: part_of EHDAA2:0004543 ! body veins (embryonic human) relationship: part_of UBERON:0002423 ! hepatobiliary system [Term] id: EHDAA2:0000946 name: left lung caudal lobe associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009602 ! left lung associated mesenchyme relationship: part_of UBERON:0008953 ! lower lobe of left lung [Term] id: EHDAA2:0000947 name: left lung caudal lobe bronchiole (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000949 ! left lung caudal lobe epithelium (embryonic human) relationship: part_of EHDAA2:0004095 ! left lung caudal lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000949 name: left lung caudal lobe epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from UBERON:0005673 ! left lung endothelium relationship: part_of EHDAA2:0004095 ! left lung caudal lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000950 name: left lung caudal lobe lobar bronchus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000949 ! left lung caudal lobe epithelium (embryonic human) relationship: develops_from UBERON:0002340 ! epithelium of main bronchus relationship: part_of EHDAA2:0004095 ! left lung caudal lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000951 name: left lung caudal lobe segmental bronchi (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000949 ! left lung caudal lobe epithelium (embryonic human) relationship: part_of EHDAA2:0004095 ! left lung caudal lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000952 name: left lung caudal lobe segmental bronchus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000949 ! left lung caudal lobe epithelium (embryonic human) relationship: part_of EHDAA2:0004095 ! left lung caudal lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000954 name: left lung cranial lobe associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009602 ! left lung associated mesenchyme relationship: part_of UBERON:0008952 ! upper lobe of left lung [Term] id: EHDAA2:0000955 name: left lung cranial lobe bronchiole (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000957 ! left lung cranial lobe epithelium (embryonic human) relationship: part_of EHDAA2:0004096 ! left lung cranial lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000957 name: left lung cranial lobe epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from UBERON:0005673 ! left lung endothelium relationship: part_of EHDAA2:0004096 ! left lung cranial lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000958 name: left lung cranial lobe lobar bronchus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000957 ! left lung cranial lobe epithelium (embryonic human) relationship: part_of EHDAA2:0004096 ! left lung cranial lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000959 name: left lung cranial lobe segmental bronchi (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000957 ! left lung cranial lobe epithelium (embryonic human) relationship: part_of EHDAA2:0004096 ! left lung cranial lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000960 name: left lung cranial lobe segmental bronchus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0000957 ! left lung cranial lobe epithelium (embryonic human) relationship: part_of EHDAA2:0004096 ! left lung cranial lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0000968 name: left venous valve (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0005208 ! right atrium valve [Term] id: EHDAA2:0000969 name: vitelline arterial plexus left (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0000939 ! extraembryonic vitelline artery left (embryonic human) relationship: part_of UBERON:0006002 ! vitelline artery [Term] id: EHDAA2:0000970 name: vitelline artery left (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from EHDAA2:0000939 ! extraembryonic vitelline artery left (embryonic human) relationship: develops_from EHDAA2:0000969 ! vitelline arterial plexus left (embryonic human) relationship: part_of UBERON:0006002 ! vitelline artery [Term] id: EHDAA2:0000980 name: early lens fibres (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0005656 ! lens vesicle epithelium relationship: part_of UBERON:0005426 ! lens vesicle [Term] id: EHDAA2:0000993 name: levator scapulae pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0008713 ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: EHDAA2:0000994 name: limb system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000467 ! anatomical system relationship: part_of EHDAA2:0000002 ! human embryo (embryonic human) [Term] id: EHDAA2:0001003 name: liver left lobe primitive bare area (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0006984 ! anatomical surface [Term] id: EHDAA2:0001006 name: liver right caudate lobe hepatic sinusoids (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of UBERON:0001117 ! caudate lobe of liver [Term] id: EHDAA2:0001007 name: liver right caudate lobe parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0001176 ! right hepatic duct relationship: part_of UBERON:0001117 ! caudate lobe of liver [Term] id: EHDAA2:0001011 name: liver right lobe primitive bare area (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0006984 ! anatomical surface [Term] id: EHDAA2:0001013 name: liver right quadrate lobe hepatic sinusoids (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of UBERON:0001116 ! quadrate lobe of liver [Term] id: EHDAA2:0001014 name: liver right quadrate lobe parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0001176 ! right hepatic duct relationship: part_of UBERON:0001116 ! quadrate lobe of liver [Term] id: EHDAA2:0001035 name: lower limb bud mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001120 ! mesenchyme from somatopleure (embryonic human) relationship: part_of UBERON:0002103 ! hindlimb [Term] id: EHDAA2:0001038 name: lumbar vertebral cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] id: EHDAA2:0001039 name: lumbar vertebral pre-cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] id: EHDAA2:0001049 name: male genital swelling (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: EHDAA2:0001050 name: male nephric duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0003074 ! mesonephric duct relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: EHDAA2:0001051 name: male nephric duct lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005082 ! tube lumen [Term] id: EHDAA2:0001052 name: male paramesonephric duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0004048 ! early paramesonephric duct (embryonic human) relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: EHDAA2:0001053 name: male primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) is_a: EHDAA2:0004054 ! reproductive cell population (embryonic human) relationship: develops_from EHDAA2:0001536 ! indifferent gonad primordial germ cells (embryonic human) relationship: part_of UBERON:0000473 ! testis [Term] id: EHDAA2:0001060 name: mandibular artery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0001616 ! maxillary artery relationship: part_of EHDAA2:0004521 ! head arteries (embryonic human) [Term] id: EHDAA2:0001063 name: manubrium sterni pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0000975 ! sternum [Term] id: EHDAA2:0001075 name: medial migration pathway NC-derived mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007530 ! migrating mesenchyme population relationship: develops_from EHDAA2:0001251 ! trunk neural ectoderm (embryonic human) relationship: develops_from UBERON:0007214 ! mesenchyme derived from trunk neural crest relationship: part_of UBERON:0007214 ! mesenchyme derived from trunk neural crest [Term] id: EHDAA2:0001083 name: median lingual swelling associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009584 ! 1st arch mandibular mesenchyme relationship: part_of UBERON:0006756 ! median lingual swelling [Term] id: EHDAA2:0001085 name: median lingual swelling epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000033 ! 1st arch mandibular endoderm (embryonic human) relationship: part_of UBERON:0006756 ! median lingual swelling [Term] id: EHDAA2:0001090 name: medulla oblongata alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000924 ! myelencephalon alar plate (embryonic human) relationship: part_of UBERON:0005240 ! basal plate medulla oblongata [Term] id: EHDAA2:0001091 name: medulla oblongata marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000926 ! myelencephalon marginal layer (embryonic human) relationship: part_of EHDAA2:0001098 ! medulla oblongata lateral wall (embryonic human) [Term] id: EHDAA2:0001094 name: medulla oblongata basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000929 ! myelencephalon basal plate (embryonic human) relationship: part_of UBERON:0005240 ! basal plate medulla oblongata [Term] id: EHDAA2:0001096 name: medulla oblongata ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0000927 ! myelencephalon ventricular layer (embryonic human) relationship: part_of EHDAA2:0001098 ! medulla oblongata lateral wall (embryonic human) [Term] id: EHDAA2:0001098 name: medulla oblongata lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000923 ! myelencephalon lateral wall (embryonic human) relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: EHDAA2:0001102 name: mesencephalic vesicle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: EHDAA2:0001103 name: midbrain vesicle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: develops_from EHDAA2:0001102 ! mesencephalic vesicle (embryonic human) relationship: part_of UBERON:0001891 ! midbrain [Term] id: EHDAA2:0001120 name: mesenchyme from somatopleure (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0006258 ! lateral plate mesenchyme [Term] id: EHDAA2:0001122 name: mesenchyme from splanchnopleure (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of UBERON:0006258 ! lateral plate mesenchyme [Term] id: EHDAA2:0001124 name: mesenteric sac (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0001138 ! superior mesenteric vein relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: EHDAA2:0001129 name: mesonephric artery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0005599 ! common dorsal aorta relationship: part_of EHDAA2:0004503 ! body arteries (embryonic human) relationship: part_of UBERON:0000080 ! mesonephros [Term] id: EHDAA2:0001141 name: metanephros drainage component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from UBERON:0000084 ! ureteric bud relationship: part_of UBERON:0000081 ! metanephros [Term] id: EHDAA2:0001142 name: metanephros excretory component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000081 ! metanephros [Term] id: EHDAA2:0001143 name: metanephros induced blastemal cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003131 ! developing structure with stem cells (embryonic human) relationship: develops_from UBERON:0003220 ! metanephric mesenchyme relationship: part_of UBERON:0000081 ! metanephros [Term] id: EHDAA2:0001145 name: metanephros medullary stroma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0001143 ! metanephros induced blastemal cells (embryonic human) relationship: part_of UBERON:0000081 ! metanephros [Term] id: EHDAA2:0001146 name: metanephros medullary tubules (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0001516 ! primitive nephrons (embryonic human) relationship: part_of EHDAA2:0001142 ! metanephros excretory component (embryonic human) relationship: part_of EHDAA2:0001145 ! metanephros medullary stroma (embryonic human) [Term] id: EHDAA2:0001147 name: metanephros primitive collecting ducts (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from UBERON:0000084 ! ureteric bud relationship: part_of EHDAA2:0001141 ! metanephros drainage component (embryonic human) [Term] id: EHDAA2:0001150 name: pons alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004370 ! rhombomere 01 alar plate (embryonic human) relationship: develops_from EHDAA2:0004387 ! rhombomere 03 alar plate (embryonic human) relationship: develops_from EHDAA2:0004389 ! rhombomere 02 alar plate (embryonic human) relationship: develops_from EHDAA2:0004391 ! early isthmus alar plate (embryonic human) relationship: part_of UBERON:0005239 ! basal plate metencephalon [Term] id: EHDAA2:0001151 name: cerebellum mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004370 ! rhombomere 01 alar plate (embryonic human) relationship: develops_from EHDAA2:0004391 ! early isthmus alar plate (embryonic human) relationship: part_of EHDAA2:0004404 ! cerebellum lateral wall (embryonic human) [Term] id: EHDAA2:0001152 name: cerebellum marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000761 ! early isthmus marginal layer (embryonic human) relationship: develops_from EHDAA2:0001643 ! rhombomere 01 marginal layer (embryonic human) relationship: part_of EHDAA2:0004404 ! cerebellum lateral wall (embryonic human) [Term] id: EHDAA2:0001153 name: cerebellum ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0000766 ! early isthmus ventricular layer (embryonic human) relationship: develops_from EHDAA2:0001646 ! rhombomere 01 ventricular layer (embryonic human) relationship: part_of EHDAA2:0004404 ! cerebellum lateral wall (embryonic human) [Term] id: EHDAA2:0001155 name: pons basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004371 ! rhombomere 01 basal plate (embryonic human) relationship: develops_from EHDAA2:0004388 ! rhombomere 03 basal plate (embryonic human) relationship: develops_from EHDAA2:0004390 ! rhombomere 02 basal plate (embryonic human) relationship: part_of UBERON:0005239 ! basal plate metencephalon [Term] id: EHDAA2:0001157 name: pons ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001646 ! rhombomere 01 ventricular layer (embryonic human) relationship: develops_from EHDAA2:0001656 ! rhombomere 02 ventricular layer (embryonic human) relationship: develops_from EHDAA2:0001666 ! rhombomere 03 ventricular layer (embryonic human) relationship: part_of EHDAA2:0001159 ! pons lateral wall (embryonic human) [Term] id: EHDAA2:0001159 name: pons lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of UBERON:0000988 ! pons [Term] id: EHDAA2:0001165 name: midbrain future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001166 ! midbrain primary meninx future arachnoid layer (embryonic human) relationship: part_of EHDAA2:0004316 ! future arachnoid layer (embryonic human) relationship: part_of UBERON:0003288 ! meninx of midbrain [Term] id: EHDAA2:0001166 name: midbrain primary meninx future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001176 ! midbrain primary meninx (embryonic human) relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of EHDAA2:0001176 ! midbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0004316 ! future arachnoid layer (embryonic human) [Term] id: EHDAA2:0001167 name: midbrain future dura mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001168 ! midbrain primary meninx future dura mater (embryonic human) relationship: part_of UBERON:0003288 ! meninx of midbrain relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0001168 name: midbrain primary meninx future dura mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001176 ! midbrain primary meninx (embryonic human) relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of EHDAA2:0001176 ! midbrain primary meninx (embryonic human) relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0001169 name: midbrain future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of EHDAA2:0004315 ! future subarachnoid space (embryonic human) relationship: part_of UBERON:0003288 ! meninx of midbrain [Term] id: EHDAA2:0001170 name: midbrain primary meninx future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: develops_from EHDAA2:0001176 ! midbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0001176 ! midbrain primary meninx (embryonic human) relationship: part_of EHDAA2:0004315 ! future subarachnoid space (embryonic human) [Term] id: EHDAA2:0001173 name: midbrain marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: part_of UBERON:0005495 ! midbrain lateral wall [Term] id: EHDAA2:0001176 name: midbrain primary meninx (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007529 ! loose mesenchyme tissue relationship: part_of EHDAA2:0004453 ! primary meninx (embryonic human) relationship: part_of UBERON:0003288 ! meninx of midbrain [Term] id: EHDAA2:0001178 name: midbrain ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: part_of UBERON:0005495 ! midbrain lateral wall [Term] id: EHDAA2:0001184 name: middle sacral vein (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004526 ! body venous capillary plexus (embryonic human) relationship: part_of EHDAA2:0004543 ! body veins (embryonic human) [Term] id: EHDAA2:0001190 name: midgut duodenum associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009478 ! associated mesenchyme of midgut relationship: part_of UBERON:0003287 ! duodenum of midgut [Term] id: EHDAA2:0001216 name: myelencephalon floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000650 ! future myelencephalon floor plate (embryonic human) relationship: part_of UBERON:0005290 ! myelencephalon [Term] id: EHDAA2:0001218 name: myelencephalon roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000652 ! future myelencephalon roof plate (embryonic human) relationship: part_of UBERON:0005290 ! myelencephalon [Term] id: EHDAA2:0001231 name: nasal mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0000869 ! intermaxillary process mesenchyme (embryonic human) relationship: develops_from UBERON:0009204 ! medial nasal process mesenchyme relationship: develops_from UBERON:0009205 ! lateral nasal process mesenchyme relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: EHDAA2:0001235 name: nasal surface ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000870 ! intermaxillary process surface ectoderm (embryonic human) relationship: develops_from UBERON:0005233 ! medial-nasal process ectoderm relationship: develops_from UBERON:0009206 ! lateral nasal process surface ectoderm relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: EHDAA2:0001240 name: nasopharynx associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010046 ! entire pharyngeal arch associated mesenchyme relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: EHDAA2:0001244 name: nephric duct lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005082 ! tube lumen relationship: part_of UBERON:0003074 ! mesonephric duct [Term] id: EHDAA2:0001245 name: nephric vesicles (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0005113 ! metanephric cortex relationship: part_of UBERON:0005113 ! metanephric cortex [Term] id: EHDAA2:0001250 name: neural tube neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0004053 ! migrating developing tissue (embryonic human) relationship: develops_from EHDAA2:0004669 ! neural tube lateral wall (embryonic human) relationship: part_of UBERON:0002342 ! neural crest [Term] id: EHDAA2:0001251 name: trunk neural ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0002346 ! neurectoderm relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: EHDAA2:0001254 name: neural tube (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0005062 ! neural fold relationship: part_of UBERON:0002240 ! spinal cord [Term] id: EHDAA2:0001259 name: neural tube lateral wall alar column (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0005883 ! neural tube lateral wall mantle layer [Term] id: EHDAA2:0001260 name: spinal cord lateral wall basal column (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0005496 ! neural tube lateral wall relationship: part_of UBERON:0005883 ! neural tube lateral wall mantle layer [Term] id: EHDAA2:0001263 name: spinal cord lateral wall marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0005496 ! neural tube lateral wall [Term] id: EHDAA2:0001267 name: spinal cord lateral wall ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from UBERON:0005496 ! neural tube lateral wall relationship: part_of UBERON:0005496 ! neural tube lateral wall [Term] id: EHDAA2:0001276 name: early nucleus pulposus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0002328 ! notochord relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: EHDAA2:0001280 name: obturator internis (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002036 ! striated muscle tissue relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0004470 ! musculature of pelvic girdle [Term] id: EHDAA2:0001283 name: occipital neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007530 ! migrating mesenchyme population relationship: develops_from EHDAA2:0001567 ! pro-rhombomere d neural crest (embryonic human) relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: EHDAA2:0001286 name: oesophagus associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000558 ! lower foregut region associated mesenchyme (embryonic human) relationship: part_of UBERON:0001043 ! esophagus [Term] id: EHDAA2:0001290 name: olfactory cortex mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001986 ! telencephalon mantle layer (embryonic human) relationship: part_of UBERON:0002894 ! olfactory cortex [Term] id: EHDAA2:0001291 name: olfactory cortx marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001988 ! telencephalon marginal layer (embryonic human) relationship: part_of UBERON:0002894 ! olfactory cortex [Term] id: EHDAA2:0001292 name: olfactory cortex ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001996 ! telencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0002894 ! olfactory cortex [Term] id: EHDAA2:0001305 name: optic cup intraretinal space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004620 ! lumen of epithelial sac (embryonic human) [Term] id: EHDAA2:0001319 name: optic stalk fissure (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0006846 ! groove [Term] id: EHDAA2:0001323 name: retinal disc (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from UBERON:0004128 ! optic vesicle relationship: part_of UBERON:0004128 ! optic vesicle [Term] id: EHDAA2:0001334 name: otic neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007530 ! migrating mesenchyme population relationship: develops_from UBERON:0003849 ! mesencephalic neural crest relationship: part_of UBERON:0003099 ! cranial neural crest [Term] id: EHDAA2:0001345 name: otocyst pre-vestibular region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0003051 ! ear vesicle [Term] id: EHDAA2:0001346 name: otocyst pre-vestibular region associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009500 ! associated mesenchyme of otocyst relationship: part_of EHDAA2:0001345 ! otocyst pre-vestibular region (embryonic human) [Term] id: EHDAA2:0001347 name: otocyst pre-vestibular region epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0005641 ! otocyst epithelium relationship: part_of EHDAA2:0001345 ! otocyst pre-vestibular region (embryonic human) [Term] id: EHDAA2:0001352 name: conus cordis (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001981 ! blood vessel relationship: develops_from EHDAA2:0000426 ! primitive heart tube endocardium (embryonic human) relationship: part_of EHDAA2:0000426 ! primitive heart tube endocardium (embryonic human) [Term] id: EHDAA2:0001355 name: outflow tract endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from EHDAA2:0001352 ! conus cordis (embryonic human) relationship: develops_from UBERON:0002061 ! truncus arteriosus relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0004145 ! outflow tract [Term] id: EHDAA2:0001356 name: outflow tract future ascending aorta (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001355 ! outflow tract endocardium (embryonic human) relationship: develops_from EHDAA2:0004187 ! aortico-pulmonary spiral septum endocardium (embryonic human) relationship: part_of EHDAA2:0001355 ! outflow tract endocardium (embryonic human) [Term] id: EHDAA2:0001357 name: outflow tract future pulmonary artery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001355 ! outflow tract endocardium (embryonic human) relationship: develops_from EHDAA2:0004187 ! aortico-pulmonary spiral septum endocardium (embryonic human) relationship: part_of EHDAA2:0001355 ! outflow tract endocardium (embryonic human) [Term] id: EHDAA2:0001369 name: pancreas body dorsal duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0001372 ! dorsal pancreas duct (embryonic human) relationship: part_of UBERON:0001150 ! body of pancreas [Term] id: EHDAA2:0001372 name: dorsal pancreas duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from EHDAA2:0001385 ! pancreas dorsal primordium duct bud (embryonic human) relationship: part_of UBERON:0009708 ! dorsal pancreas [Term] id: EHDAA2:0001373 name: dorsal pancreas parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0001372 ! dorsal pancreas duct (embryonic human) relationship: develops_from EHDAA2:0001386 ! pancreas dorsal primordium parenchyma (embryonic human) relationship: part_of UBERON:0009708 ! dorsal pancreas [Term] id: EHDAA2:0001375 name: dorsal pancreas head (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002365 ! exocrine gland relationship: develops_from UBERON:0009708 ! dorsal pancreas relationship: part_of UBERON:0001069 ! head of pancreas [Term] id: EHDAA2:0001376 name: dorsal pancreas head parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0001373 ! dorsal pancreas parenchyma (embryonic human) relationship: develops_from UBERON:0005429 ! accessory pancreatic duct relationship: part_of EHDAA2:0001375 ! dorsal pancreas head (embryonic human) [Term] id: EHDAA2:0001377 name: ventral pancreas head (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002365 ! exocrine gland relationship: develops_from UBERON:0009709 ! ventral pancreas relationship: part_of UBERON:0001069 ! head of pancreas [Term] id: EHDAA2:0001380 name: ventral pancreas head duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from EHDAA2:0001396 ! ventral pancreas duct (embryonic human) relationship: part_of EHDAA2:0001377 ! ventral pancreas head (embryonic human) [Term] id: EHDAA2:0001381 name: ventral pancreas head parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0001380 ! ventral pancreas head duct (embryonic human) relationship: develops_from EHDAA2:0001394 ! ventral pancreas parenchyma (embryonic human) relationship: part_of EHDAA2:0001377 ! ventral pancreas head (embryonic human) [Term] id: EHDAA2:0001385 name: pancreas dorsal primordium duct bud (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0009497 ! epithelium of foregut-midgut junction relationship: part_of UBERON:0003923 ! dorsal pancreatic bud [Term] id: EHDAA2:0001386 name: pancreas dorsal primordium parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0001385 ! pancreas dorsal primordium duct bud (embryonic human) relationship: part_of UBERON:0003923 ! dorsal pancreatic bud [Term] id: EHDAA2:0001388 name: pancreas ventral primordium parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0001389 ! pancreas ventral primordium duct bud (embryonic human) relationship: part_of UBERON:0003924 ! ventral pancreatic bud [Term] id: EHDAA2:0001389 name: pancreas ventral primordium duct bud (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0009497 ! epithelium of foregut-midgut junction relationship: part_of UBERON:0003924 ! ventral pancreatic bud [Term] id: EHDAA2:0001391 name: pancreas tail dorsal pancreatic duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from EHDAA2:0001372 ! dorsal pancreas duct (embryonic human) relationship: part_of UBERON:0001151 ! tail of pancreas [Term] id: EHDAA2:0001394 name: ventral pancreas parenchyma (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0001388 ! pancreas ventral primordium parenchyma (embryonic human) relationship: develops_from EHDAA2:0001396 ! ventral pancreas duct (embryonic human) relationship: part_of UBERON:0009709 ! ventral pancreas [Term] id: EHDAA2:0001396 name: ventral pancreas duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from EHDAA2:0001389 ! pancreas ventral primordium duct bud (embryonic human) relationship: part_of UBERON:0009709 ! ventral pancreas [Term] id: EHDAA2:0001406 name: greater sac parietal mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0005669 ! peritoneal cavity mesothelium relationship: part_of UBERON:0005449 ! greater sac [Term] id: EHDAA2:0001407 name: parietal omental bursa mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0005669 ! peritoneal cavity mesothelium relationship: part_of UBERON:0001341 ! lesser sac [Term] id: EHDAA2:0001408 name: parietal pericardial cavity mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0001074 ! pericardial cavity [Term] id: EHDAA2:0001412 name: parietal pleural cavity mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0003390 ! mesothelium of pleural cavity [Term] id: EHDAA2:0001414 name: parotid gland primordium epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0004134 ! upper jaw epithelium from ectoderm (embryonic human) relationship: part_of UBERON:0008801 ! parotid gland primordium [Term] id: EHDAA2:0001415 name: parotid gland primordium mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0003323 ! mesenchyme of upper jaw relationship: part_of UBERON:0008801 ! parotid gland primordium [Term] id: EHDAA2:0001423 name: pectoral pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0008713 ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: EHDAA2:0001432 name: pelvic splanchnic parasympathetic nerve (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001021 ! nerve relationship: develops_from EHDAA2:0004200 ! sacral parasympathetic ganglia (embryonic human) relationship: develops_from EHDAA2:0004301 ! trunk segmental spinal nerves (embryonic human) relationship: part_of UBERON:0004293 ! parasympathetic nerve [Term] id: EHDAA2:0001468 name: pinna pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0003325 ! mesenchyme of pinna relationship: part_of UBERON:0001757 ! pinna [Term] id: EHDAA2:0001472 name: pituitary primordium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0003293 ! gland of oral region [Term] id: EHDAA2:0001478 name: pleuropericardial canal mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0006277 ! pleuropericardial canals [Term] id: EHDAA2:0001482 name: pleuroperitoneal canal mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0006279 ! pleuroperitoneal canal [Term] id: EHDAA2:0001495 name: early premaxilla (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002514 ! intramembranous bone relationship: develops_from EHDAA2:0004601 ! maxillary process mesenchyme from neural crest (embryonic human) relationship: part_of UBERON:0003277 ! skeleton of upper jaw relationship: part_of UBERON:0009526 ! maxillary process mesenchyme [Term] id: EHDAA2:0001497 name: prevertebral ganglia (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: develops_from EHDAA2:0001972 ! primordial sympathetic ganglia (embryonic human) relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: EHDAA2:0001503 name: primary yolk sac cavity (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004620 ! lumen of epithelial sac (embryonic human) [Term] id: EHDAA2:0001504 name: extraembryonic allantois (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0001040 ! yolk sac relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0001514 name: primitive marginal sinus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0006282 ! primary head vein relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: EHDAA2:0001516 name: primitive nephrons (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0001245 ! nephric vesicles (embryonic human) relationship: part_of UBERON:0005113 ! metanephric cortex [Term] id: EHDAA2:0001519 name: primitive pelvis of ureter (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0001147 ! metanephros primitive collecting ducts (embryonic human) relationship: part_of EHDAA2:0001141 ! metanephros drainage component (embryonic human) [Term] id: EHDAA2:0001524 name: primitive straight sinus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0006282 ! primary head vein relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: EHDAA2:0001528 name: primitive transverse sinus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0006282 ! primary head vein relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: EHDAA2:0001533 name: primitive heart tube visceral pericardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of UBERON:0005498 ! primitive heart tube [Term] id: EHDAA2:0001536 name: indifferent gonad primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004054 ! reproductive cell population (embryonic human) relationship: develops_from EHDAA2:0004050 ! gonadal ridge primordial germ cells (embryonic human) relationship: part_of UBERON:0009117 ! indifferent gonad [Term] id: EHDAA2:0001537 name: hindgut primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007530 ! migrating mesenchyme population relationship: develops_from EHDAA2:0001539 ! allantois primordial germ cells (embryonic human) relationship: part_of UBERON:0001046 ! hindgut [Term] id: EHDAA2:0001539 name: allantois primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004054 ! reproductive cell population (embryonic human) is_a: UBERON:0007530 ! migrating mesenchyme population relationship: develops_from EHDAA2:0001541 ! yolk sac primordial germ cells (embryonic human) relationship: part_of EHDAA2:0001504 ! extraembryonic allantois (embryonic human) [Term] id: EHDAA2:0001541 name: yolk sac primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004054 ! reproductive cell population (embryonic human) relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0003316 ! mesenchyme of yolk sac [Term] id: EHDAA2:0001542 name: axial vein of lower limb (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004532 ! lower limb vascular plexus (embryonic human) relationship: part_of EHDAA2:0004527 ! limb veins (embryonic human) relationship: part_of UBERON:0002103 ! hindlimb [Term] id: EHDAA2:0001543 name: axial vein of upper limb (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004531 ! upper limb vascular plexus (embryonic human) relationship: part_of EHDAA2:0004527 ! limb veins (embryonic human) relationship: part_of UBERON:0002102 ! forelimb [Term] id: EHDAA2:0001544 name: pro-rhombomere a (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0004321 ! pro-rhombomere group (embryonic human) [Term] id: EHDAA2:0001545 name: pro-rhombomere a floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001544 ! pro-rhombomere a (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0001546 name: pro-rhombomere a lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001549 ! pro-rhombomere a neural fold (embryonic human) relationship: part_of EHDAA2:0001544 ! pro-rhombomere a (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0001548 name: pro-rhombomere a neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001549 ! pro-rhombomere a neural fold (embryonic human) relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: EHDAA2:0001549 name: pro-rhombomere a neural fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001544 ! pro-rhombomere a (embryonic human) [Term] id: EHDAA2:0001550 name: pro-rhombomere a roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001544 ! pro-rhombomere a (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0001551 name: pro-rhombomere b (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0004321 ! pro-rhombomere group (embryonic human) [Term] id: EHDAA2:0001552 name: pro-rhombomere b floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001551 ! pro-rhombomere b (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0001553 name: pro-rhombomere b lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of EHDAA2:0001551 ! pro-rhombomere b (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0001554 name: pro-rhombomere b neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001555 ! pro-rhombomere b neural fold (embryonic human) relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: EHDAA2:0001555 name: pro-rhombomere b neural fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001551 ! pro-rhombomere b (embryonic human) [Term] id: EHDAA2:0001556 name: pro-rhombomere b roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001551 ! pro-rhombomere b (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0001557 name: pro-rhombomere c (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0004321 ! pro-rhombomere group (embryonic human) [Term] id: EHDAA2:0001558 name: pro-rhombomere c floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001557 ! pro-rhombomere c (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0001559 name: pro-rhombomere c lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001561 ! pro-rhombomere c neural fold (embryonic human) relationship: part_of EHDAA2:0001557 ! pro-rhombomere c (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0001560 name: pro-rhombomere c neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001561 ! pro-rhombomere c neural fold (embryonic human) relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: EHDAA2:0001561 name: pro-rhombomere c neural fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001557 ! pro-rhombomere c (embryonic human) [Term] id: EHDAA2:0001562 name: pro-rhombomere c roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001557 ! pro-rhombomere c (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0001563 name: pro-rhombomere d (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0004321 ! pro-rhombomere group (embryonic human) [Term] id: EHDAA2:0001564 name: pro-rhombomere d floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001563 ! pro-rhombomere d (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0001565 name: pro-rhombomere d lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001568 ! pro-rhombomere d neural fold (embryonic human) relationship: part_of EHDAA2:0001563 ! pro-rhombomere d (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0001567 name: pro-rhombomere d neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001568 ! pro-rhombomere d neural fold (embryonic human) relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: EHDAA2:0001568 name: pro-rhombomere d neural fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: part_of EHDAA2:0001563 ! pro-rhombomere d (embryonic human) [Term] id: EHDAA2:0001573 name: pubic cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from UBERON:0006285 ! pubic cartilage condensation relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle [Term] id: EHDAA2:0001578 name: pulmonary valve leaflet mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004186 ! aortico-pulmonary spiral septum mesenchyme (embryonic human) relationship: part_of EHDAA2:0002165 ! valve mesenchyme (embryonic human) relationship: part_of UBERON:0002146 ! pulmonary valve [Term] id: EHDAA2:0001581 name: stomach pyloric region associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001916 ! early stomach associated mesenchyme (embryonic human) relationship: part_of UBERON:0001166 ! pylorus [Term] id: EHDAA2:0001586 name: radius pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: EHDAA2:0001593 name: rectum associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004591 ! internal anal region mesenchyme (embryonic human) relationship: part_of UBERON:0001052 ! rectum [Term] id: EHDAA2:0001597 name: remnant of posterior cardinal vein (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0002065 ! postcardinal vein relationship: develops_from UBERON:0009139 ! right posterior cardinal vein relationship: part_of UBERON:0004344 ! cardinal vein [Term] id: EHDAA2:0001598 name: adenohypophysial stem (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005154 ! epithelial cord relationship: develops_from UBERON:0005356 ! Rathke's pouch relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: EHDAA2:0001610 name: hindgut part of future large intestine (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004582 ! early hindgut (embryonic human) relationship: part_of UBERON:0001046 ! hindgut [Term] id: EHDAA2:0001611 name: hindgut part of future large intestine associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009503 ! associated mesenchyme of hindgut relationship: part_of EHDAA2:0001610 ! hindgut part of future large intestine (embryonic human) [Term] id: EHDAA2:0001613 name: hindgut part of future large intestine epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0003353 ! epithelium of hindgut relationship: part_of EHDAA2:0001610 ! hindgut part of future large intestine (embryonic human) relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: EHDAA2:0001614 name: hindgut part of future large intestine dorsal mesentery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007529 ! loose mesenchyme tissue relationship: develops_from EHDAA2:0001611 ! hindgut part of future large intestine associated mesenchyme (embryonic human) relationship: part_of EHDAA2:0001610 ! hindgut part of future large intestine (embryonic human) relationship: part_of UBERON:0001046 ! hindgut relationship: part_of UBERON:0002296 ! dorsal mesentery [Term] id: EHDAA2:0001615 name: future jejunum & ileum (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004563 ! early midgut region (embryonic human) relationship: part_of UBERON:0001045 ! midgut [Term] id: EHDAA2:0001616 name: future jejunum & ileum associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009478 ! associated mesenchyme of midgut relationship: part_of EHDAA2:0001615 ! future jejunum & ileum (embryonic human) [Term] id: EHDAA2:0001619 name: future jejunum & ileum epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0003352 ! epithelium of midgut relationship: part_of EHDAA2:0001615 ! future jejunum & ileum (embryonic human) relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: EHDAA2:0001623 name: rest of stomach (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000945 ! stomach [Term] id: EHDAA2:0001624 name: rest of stomach associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001916 ! early stomach associated mesenchyme (embryonic human) relationship: part_of EHDAA2:0001623 ! rest of stomach (embryonic human) [Term] id: EHDAA2:0001625 name: rest of stomach epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0001276 ! epithelium of stomach relationship: part_of EHDAA2:0001623 ! rest of stomach (embryonic human) relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: EHDAA2:0001626 name: reticulum (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from EHDAA2:0000336 ! mural trophectoderm cytotrophoblast (embryonic human) relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0001630 name: rhombencephalon (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000955 ! brain [Term] id: EHDAA2:0001632 name: isthmus primordium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001639 ! early rhombomere 01 (embryonic human) relationship: part_of EHDAA2:0001630 ! rhombencephalon (embryonic human) [Term] id: EHDAA2:0001636 name: rhomboid pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0008713 ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: EHDAA2:0001639 name: early rhombomere 01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001544 ! pro-rhombomere a (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001642 name: rhombomere 01 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004325 ! early rhombomere 01 lateral wall (embryonic human) relationship: part_of EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0000626 ! future metencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005567 ! rhombomere 1 lateral wall [Term] id: EHDAA2:0001643 name: rhombomere 01 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004378 ! early rhombomere 01 marginal layer (embryonic human) relationship: part_of EHDAA2:0000627 ! future metencephalon marginal layer (embryonic human) relationship: part_of UBERON:0005567 ! rhombomere 1 lateral wall [Term] id: EHDAA2:0001646 name: rhombomere 01 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004325 ! early rhombomere 01 lateral wall (embryonic human) relationship: part_of EHDAA2:0000628 ! future metencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005567 ! rhombomere 1 lateral wall [Term] id: EHDAA2:0001649 name: early rhombomere 02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001544 ! pro-rhombomere a (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001652 name: rhombomere 02 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004326 ! early rhombomere 02 lateral wall (embryonic human) relationship: part_of EHDAA2:0000626 ! future metencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005571 ! rhombomere 2 lateral wall [Term] id: EHDAA2:0001653 name: rhombomere 02 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004379 ! early rhombomere 02 marginal layer (embryonic human) relationship: part_of EHDAA2:0000627 ! future metencephalon marginal layer (embryonic human) relationship: part_of UBERON:0005571 ! rhombomere 2 lateral wall [Term] id: EHDAA2:0001656 name: rhombomere 02 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004326 ! early rhombomere 02 lateral wall (embryonic human) relationship: part_of EHDAA2:0000628 ! future metencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005571 ! rhombomere 2 lateral wall [Term] id: EHDAA2:0001659 name: early rhombomere 03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001544 ! pro-rhombomere a (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001662 name: rhombomere 03 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004328 ! early rhombomere 03 lateral wall (embryonic human) relationship: part_of EHDAA2:0000626 ! future metencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005574 ! rhombomere 3 lateral wall [Term] id: EHDAA2:0001663 name: rhombomere 03 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004328 ! early rhombomere 03 lateral wall (embryonic human) relationship: part_of EHDAA2:0000627 ! future metencephalon marginal layer (embryonic human) relationship: part_of EHDAA2:0004380 ! early rhombomere 03 marginal layer (embryonic human) relationship: part_of UBERON:0005574 ! rhombomere 3 lateral wall [Term] id: EHDAA2:0001666 name: rhombomere 03 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from UBERON:0005574 ! rhombomere 3 lateral wall relationship: part_of EHDAA2:0000628 ! future metencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005574 ! rhombomere 3 lateral wall [Term] id: EHDAA2:0001669 name: early rhombomere 04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001551 ! pro-rhombomere b (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001672 name: rhombomere 04 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004327 ! early rhombomere 04 lateral wall (embryonic human) relationship: part_of EHDAA2:0000647 ! future myelencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005577 ! rhombomere 4 lateral wall [Term] id: EHDAA2:0001673 name: rhombomere 04 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004381 ! early rhombomere 04 marginal layer (embryonic human) relationship: part_of EHDAA2:0000648 ! future myelencephalon marginal layer (embryonic human) relationship: part_of UBERON:0005577 ! rhombomere 4 lateral wall [Term] id: EHDAA2:0001676 name: rhombomere 04 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004327 ! early rhombomere 04 lateral wall (embryonic human) relationship: part_of EHDAA2:0000649 ! future myelencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005577 ! rhombomere 4 lateral wall [Term] id: EHDAA2:0001679 name: early rhombomere 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001557 ! pro-rhombomere c (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001682 name: rhombomere 05 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004329 ! early rhombomere 05 lateral wall (embryonic human) relationship: part_of EHDAA2:0000647 ! future myelencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005580 ! rhombomere 5 lateral wall [Term] id: EHDAA2:0001683 name: rhombomere 05 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004382 ! early rhombomere 05 marginal layer (embryonic human) relationship: part_of EHDAA2:0000648 ! future myelencephalon marginal layer (embryonic human) relationship: part_of UBERON:0005580 ! rhombomere 5 lateral wall [Term] id: EHDAA2:0001686 name: rhombomere 05 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004329 ! early rhombomere 05 lateral wall (embryonic human) relationship: part_of EHDAA2:0000649 ! future myelencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005580 ! rhombomere 5 lateral wall [Term] id: EHDAA2:0001689 name: early rhombomere 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001557 ! pro-rhombomere c (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001692 name: rhombomere 06 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004330 ! early rhombomere 06 lateral wall (embryonic human) relationship: part_of EHDAA2:0000647 ! future myelencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005583 ! rhombomere 6 lateral wall [Term] id: EHDAA2:0001693 name: rhombomere 06 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004383 ! early rhombomere 06 marginal layer (embryonic human) relationship: part_of EHDAA2:0000648 ! future myelencephalon marginal layer (embryonic human) relationship: part_of UBERON:0005583 ! rhombomere 6 lateral wall [Term] id: EHDAA2:0001696 name: rhombomere 06 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004330 ! early rhombomere 06 lateral wall (embryonic human) relationship: part_of EHDAA2:0000649 ! future myelencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005583 ! rhombomere 6 lateral wall [Term] id: EHDAA2:0001699 name: early rhombomere 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001557 ! pro-rhombomere c (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001702 name: rhombomere 07 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004331 ! early rhombomere 07 lateral wall (embryonic human) relationship: part_of EHDAA2:0000647 ! future myelencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005586 ! rhombomere 7 lateral wall [Term] id: EHDAA2:0001703 name: rhombomere 07 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004384 ! early rhombomere 07 marginal layer (embryonic human) relationship: part_of EHDAA2:0000648 ! future myelencephalon marginal layer (embryonic human) relationship: part_of UBERON:0005586 ! rhombomere 7 lateral wall [Term] id: EHDAA2:0001706 name: rhombomere 07 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004331 ! early rhombomere 07 lateral wall (embryonic human) relationship: part_of EHDAA2:0000649 ! future myelencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005586 ! rhombomere 7 lateral wall [Term] id: EHDAA2:0001708 name: early rhombomere 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001563 ! pro-rhombomere d (embryonic human) relationship: part_of EHDAA2:0004320 ! early rhombomere group (embryonic human) [Term] id: EHDAA2:0001711 name: rhombomere 08 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004332 ! early rhombomere 08 lateral wall (embryonic human) relationship: part_of EHDAA2:0000647 ! future myelencephalon mantle layer (embryonic human) relationship: part_of UBERON:0005589 ! rhombomere 8 lateral wall [Term] id: EHDAA2:0001712 name: rhombomere 08 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004385 ! early rhombomere 08 marginal layer (embryonic human) relationship: part_of EHDAA2:0000648 ! future myelencephalon marginal layer (embryonic human) relationship: part_of UBERON:0005589 ! rhombomere 8 lateral wall [Term] id: EHDAA2:0001715 name: rhombomere 08 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004332 ! early rhombomere 08 lateral wall (embryonic human) relationship: part_of EHDAA2:0000649 ! future myelencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0005589 ! rhombomere 8 lateral wall [Term] id: EHDAA2:0001721 name: extraembryonic umbilical artery right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001637 ! artery relationship: develops_from EHDAA2:0003242 ! connecting stalk blood islands (embryonic human) relationship: part_of EHDAA2:0000471 ! extraembryonic arterial system (embryonic human) relationship: part_of UBERON:0007807 ! connecting stalk blood vessels [Term] id: EHDAA2:0001722 name: extraembryonic umbilical vein right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0003242 ! connecting stalk blood islands (embryonic human) relationship: part_of EHDAA2:0000479 ! extraembryonic venous system (embryonic human) relationship: part_of UBERON:0007807 ! connecting stalk blood vessels [Term] id: EHDAA2:0001723 name: extraembryonic vitelline artery right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001637 ! artery relationship: develops_from EHDAA2:0004510 ! angioblast clusters (embryonic human) relationship: part_of EHDAA2:0000471 ! extraembryonic arterial system (embryonic human) [Term] id: EHDAA2:0001724 name: extraembryonic vitelline vein right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004510 ! angioblast clusters (embryonic human) relationship: part_of EHDAA2:0000479 ! extraembryonic venous system (embryonic human) [Term] id: EHDAA2:0001728 name: hepato-cardiac vein right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0005471 ! right umbilical vein relationship: develops_from UBERON:0005472 ! right vitelline vein relationship: part_of EHDAA2:0004543 ! body veins (embryonic human) relationship: part_of UBERON:0002423 ! hepatobiliary system [Term] id: EHDAA2:0001732 name: right lung accessory lobe associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009603 ! right lung associated mesenchyme relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: EHDAA2:0001737 name: right lung accessory lobe segmental bronchi (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0005655 ! right lung accessory lobe epithelium relationship: part_of EHDAA2:0004099 ! right lung accessory lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0001741 name: right lung caudal lobe associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009603 ! right lung associated mesenchyme relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: EHDAA2:0001745 name: right lung caudal lobe segmental bronchi (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0005640 ! right lung caudal lobe epithelium relationship: part_of EHDAA2:0004098 ! right lung caudal lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0001748 name: right lung cranial lobe associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009603 ! right lung associated mesenchyme relationship: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: EHDAA2:0001753 name: right lung cranial lobe segmental bronchi (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0005639 ! right lung cranial lobe epithelium relationship: part_of EHDAA2:0004097 ! right lung cranial lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0001764 name: vitelline arterial plexus right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0001723 ! extraembryonic vitelline artery right (embryonic human) relationship: part_of UBERON:0006002 ! vitelline artery [Term] id: EHDAA2:0001765 name: vitelline artery right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from EHDAA2:0001723 ! extraembryonic vitelline artery right (embryonic human) relationship: develops_from EHDAA2:0001764 ! vitelline arterial plexus right (embryonic human) relationship: part_of UBERON:0006002 ! vitelline artery [Term] id: EHDAA2:0001773 name: sacral vertebral cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0001774 ! sacral vertebral pre-cartilage condensation group (embryonic human) relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: EHDAA2:0001774 name: sacral vertebral pre-cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: EHDAA2:0001780 name: sclerotome 01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003441 ! head sclerotome (embryonic human) relationship: develops_from EHDAA2:0001849 ! somite 01 (embryonic human) relationship: part_of EHDAA2:0003442 ! head sclerotome group (embryonic human) [Term] id: EHDAA2:0001782 name: sclerotome 02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003441 ! head sclerotome (embryonic human) relationship: develops_from EHDAA2:0001850 ! somite 02 (embryonic human) relationship: part_of EHDAA2:0003442 ! head sclerotome group (embryonic human) [Term] id: EHDAA2:0001783 name: sclerotome 03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003441 ! head sclerotome (embryonic human) relationship: develops_from EHDAA2:0001851 ! somite 03 (embryonic human) relationship: part_of EHDAA2:0003442 ! head sclerotome group (embryonic human) [Term] id: EHDAA2:0001784 name: sclerotome 04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003441 ! head sclerotome (embryonic human) relationship: develops_from EHDAA2:0001852 ! somite 04 (embryonic human) relationship: part_of EHDAA2:0003442 ! head sclerotome group (embryonic human) [Term] id: EHDAA2:0001785 name: sclerotome 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001853 ! somite 05 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001786 name: sclerotome 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001854 ! somite 06 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001787 name: sclerotome 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001855 ! somite 07 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001788 name: sclerotome 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001856 ! somite 08 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001789 name: sclerotome 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001857 ! somite 09 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001790 name: sclerotome 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001858 ! somite 10 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001791 name: sclerotome 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001859 ! somite 11 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001792 name: sclerotome 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001860 ! somite 12 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001793 name: sclerotome 13 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001861 ! somite 13 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001794 name: sclerotome 14 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001862 ! somite 14 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001795 name: sclerotome 15 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001863 ! somite 15 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001796 name: sclerotome 16 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001864 ! somite 16 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001797 name: sclerotome 17 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001865 ! somite 17 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001798 name: sclerotome 18 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001866 ! somite 18 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001799 name: sclerotome 19 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001867 ! somite 19 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001800 name: sclerotome 20 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001868 ! somite 20 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001801 name: sclerotome 21 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001869 ! somite 21 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001802 name: sclerotome 22 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001870 ! somite 22 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001803 name: sclerotome 23 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001871 ! somite 23 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001804 name: sclerotome 24 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001872 ! somite 24 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001805 name: sclerotome 25 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001873 ! somite 25 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001806 name: sclerotome 26 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001874 ! somite 26 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001807 name: sclerotome 27 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001875 ! somite 27 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001808 name: sclerotome 28 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001876 ! somite 28 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001809 name: sclerotome 29 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001877 ! somite 29 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001810 name: sclerotome 30 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001878 ! somite 30 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001811 name: sclerotome 31 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001879 ! somite 31 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001812 name: sclerotome 32 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001880 ! somite 32 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001813 name: sclerotome 33 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001881 ! somite 33 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001814 name: sclerotome 34 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001882 ! somite 34 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001815 name: sclerotome 35 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001883 ! somite 35 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001816 name: sclerotome 36 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001884 ! somite 36 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001817 name: sclerotome 37 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001885 ! somite 37 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001818 name: sclerotome 38 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001886 ! somite 38 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001819 name: sclerotome 39 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003257 ! trunk sclerotome (embryonic human) relationship: develops_from EHDAA2:0001887 ! somite 39 (embryonic human) relationship: part_of EHDAA2:0003427 ! trunk and cervical sclerotome group (embryonic human) [Term] id: EHDAA2:0001820 name: second polar body (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0001821 name: secondary yolk sac cavity (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004620 ! lumen of epithelial sac (embryonic human) [Term] id: EHDAA2:0001831 name: septum transversum mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0004161 ! septum transversum [Term] id: EHDAA2:0001833 name: serratus anterior pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0003897 ! axial muscle [Term] id: EHDAA2:0001845 name: skin basal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000014 ! zone of skin [Term] id: EHDAA2:0001848 name: trunk and cervical somite group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: EHDAA2:0001849 name: somite 01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005594 ! head somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from EHDAA2:0002108 ! unsegmented head paraxial mesenchyme (embryonic human) relationship: part_of EHDAA2:0000737 ! head somite group (embryonic human) [Term] id: EHDAA2:0001850 name: somite 02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005594 ! head somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from EHDAA2:0002108 ! unsegmented head paraxial mesenchyme (embryonic human) relationship: part_of EHDAA2:0000737 ! head somite group (embryonic human) [Term] id: EHDAA2:0001851 name: somite 03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005594 ! head somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from EHDAA2:0002108 ! unsegmented head paraxial mesenchyme (embryonic human) relationship: part_of EHDAA2:0000737 ! head somite group (embryonic human) [Term] id: EHDAA2:0001852 name: somite 04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005594 ! head somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from EHDAA2:0002108 ! unsegmented head paraxial mesenchyme (embryonic human) relationship: part_of EHDAA2:0000737 ! head somite group (embryonic human) [Term] id: EHDAA2:0001853 name: somite 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001854 name: somite 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001855 name: somite 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001856 name: somite 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001857 name: somite 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001858 name: somite 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001859 name: somite 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001860 name: somite 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001861 name: somite 13 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001862 name: somite 14 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001863 name: somite 15 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001864 name: somite 16 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001865 name: somite 17 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001866 name: somite 18 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001867 name: somite 19 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001868 name: somite 20 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001869 name: somite 21 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001870 name: somite 22 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001871 name: somite 23 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001872 name: somite 24 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001873 name: somite 25 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001874 name: somite 26 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001875 name: somite 27 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001876 name: somite 28 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001877 name: somite 29 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001878 name: somite 30 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001879 name: somite 31 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001880 name: somite 32 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001881 name: somite 33 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001882 name: somite 34 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001883 name: somite 35 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001884 name: somite 36 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001885 name: somite 37 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001886 name: somite 38 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001887 name: somite 39 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0005598 ! trunk somite is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0009618 ! trunk paraxial mesenchyme relationship: part_of EHDAA2:0001848 ! trunk and cervical somite group (embryonic human) [Term] id: EHDAA2:0001892 name: spinal cord future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000677 ! early spinal cord meningeal covering (embryonic human) relationship: part_of EHDAA2:0004316 ! future arachnoid layer (embryonic human) relationship: part_of UBERON:0003292 ! meninx of spinal cord [Term] id: EHDAA2:0001893 name: spinal cord future dura mater (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000677 ! early spinal cord meningeal covering (embryonic human) relationship: part_of UBERON:0003292 ! meninx of spinal cord relationship: part_of UBERON:0010115 ! future dura mater [Term] id: EHDAA2:0001894 name: spinal cord future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: part_of EHDAA2:0004315 ! future subarachnoid space (embryonic human) relationship: part_of UBERON:0003292 ! meninx of spinal cord [Term] id: EHDAA2:0001901 name: spinal neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001251 ! trunk neural ectoderm (embryonic human) relationship: part_of UBERON:0002342 ! neural crest relationship: part_of UBERON:0007214 ! mesenchyme derived from trunk neural crest [Term] id: EHDAA2:0001902 name: spinal peripheral nervous system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: EHDAA2:0001907 name: squamous part of temporal bone primordium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002514 ! intramembranous bone relationship: develops_from EHDAA2:0004421 ! mesenchyme from future diencephalic neural crest (embryonic human) relationship: develops_from EHDAA2:0004442 ! mesenchyme from mesencephalic neural crest (embryonic human) relationship: part_of UBERON:0004339 ! calvaria [Term] id: EHDAA2:0001913 name: sterno-mastoid pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0002376 ! muscle of head [Term] id: EHDAA2:0001916 name: early stomach associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000558 ! lower foregut region associated mesenchyme (embryonic human) relationship: part_of UBERON:0000945 ! stomach [Term] id: EHDAA2:0001920 name: stomach fundus associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001916 ! early stomach associated mesenchyme (embryonic human) relationship: part_of UBERON:0001160 ! fundus of stomach [Term] id: EHDAA2:0001931 name: stomatodaeum rest of ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000930 ! stomodeum [Term] id: EHDAA2:0001936 name: sublingual gland primordium epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: develops_from EHDAA2:0004133 ! lower jaw epithelium from endoderm (embryonic human) relationship: part_of UBERON:0006297 ! sublingual gland primordium [Term] id: EHDAA2:0001956 name: superior parathyroid associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010256 ! 4th arch mesenchyme from neural crest relationship: part_of UBERON:0006749 ! superior parathyroid gland [Term] id: EHDAA2:0001957 name: superior parathyroid epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000486 ! multilaminar epithelium relationship: develops_from UBERON:0007125 ! pharyngeal pouch 4 relationship: part_of UBERON:0006749 ! superior parathyroid gland [Term] id: EHDAA2:0001963 name: supra-occipital pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003451 ! head mesenchyme from head sclerotome (embryonic human) relationship: part_of UBERON:0001703 ! neurocranium [Term] id: EHDAA2:0001972 name: primordial sympathetic ganglia (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: develops_from EHDAA2:0001075 ! medial migration pathway NC-derived mesenchyme (embryonic human) relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: EHDAA2:0001974 name: polar trophectoderm syncytiotrophoblast (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003248 ! syncytium (embryonic human) is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from UBERON:0006280 ! polar trophectoderm relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0001977 name: tarsus cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0001978 ! tarsus pre-cartilage condensation (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0003328 ! mesenchyme of footplate [Term] id: EHDAA2:0001978 name: tarsus pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0003328 ! mesenchyme of footplate [Term] id: EHDAA2:0001979 name: telencephalic sinus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0006282 ! primary head vein relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: EHDAA2:0001986 name: telencephalon mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0005561 ! telencephalon lateral wall relationship: part_of UBERON:0005561 ! telencephalon lateral wall [Term] id: EHDAA2:0001988 name: telencephalon marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from UBERON:0005561 ! telencephalon lateral wall relationship: part_of UBERON:0005561 ! telencephalon lateral wall [Term] id: EHDAA2:0001989 name: telencephalon medium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: EHDAA2:0001993 name: telencephalon primary meninx (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007529 ! loose mesenchyme tissue relationship: develops_from EHDAA2:0004421 ! mesenchyme from future diencephalic neural crest (embryonic human) relationship: develops_from EHDAA2:0004442 ! mesenchyme from mesencephalic neural crest (embryonic human) relationship: part_of EHDAA2:0004453 ! primary meninx (embryonic human) relationship: part_of UBERON:0003289 ! meninx of telencephalon [Term] id: EHDAA2:0001996 name: telencephalon ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from UBERON:0005561 ! telencephalon lateral wall relationship: part_of UBERON:0005561 ! telencephalon lateral wall [Term] id: EHDAA2:0002005 name: teres major pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0008713 ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: EHDAA2:0002006 name: terminal-vomeronasal neural-crest-derived mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007530 ! migrating mesenchyme population relationship: develops_from EHDAA2:0004421 ! mesenchyme from future diencephalic neural crest (embryonic human) relationship: develops_from EHDAA2:0004442 ! mesenchyme from mesencephalic neural crest (embryonic human) relationship: part_of UBERON:0005253 ! head mesenchyme [Term] id: EHDAA2:0002008 name: testis mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) is_a: UBERON:0001136 ! mesothelium relationship: develops_from EHDAA2:0000718 ! indifferent gonad mesothelium (embryonic human) relationship: part_of UBERON:0000473 ! testis [Term] id: EHDAA2:0002014 name: thoracic vertebral cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: EHDAA2:0002015 name: thoracic vertebral pre-cartilage condensation group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: EHDAA2:0002016 name: thryoglossal duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005154 ! epithelial cord relationship: develops_from UBERON:0003091 ! thyroid primordium relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: EHDAA2:0002018 name: thymus mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0002024 ! thymus primordium mesenchyme (embryonic human) relationship: part_of UBERON:0002370 ! thymus [Term] id: EHDAA2:0002024 name: thymus primordium mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010255 ! 3rd arch mesenchyme from neural crest relationship: part_of UBERON:0005562 ! thymus primordium [Term] id: EHDAA2:0002025 name: thymus primordium epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0007124 ! pharyngeal pouch 3 relationship: develops_from UBERON:0010026 ! ventral part of pharyngeal pouch 3 relationship: part_of UBERON:0005562 ! thymus primordium [Term] id: EHDAA2:0002036 name: tibia pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003468 ! lower leg mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme [Term] id: EHDAA2:0002038 name: toe 1 epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0003248 ! epithelium of footplate relationship: part_of UBERON:0003631 ! foot digit 1 [Term] id: EHDAA2:0002039 name: toe 1 mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0003328 ! mesenchyme of footplate relationship: part_of UBERON:0003631 ! foot digit 1 [Term] id: EHDAA2:0002040 name: toe 1 metatarsal pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of EHDAA2:0002039 ! toe 1 mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot [Term] id: EHDAA2:0002041 name: toe 1 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of EHDAA2:0002039 ! toe 1 mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot [Term] id: EHDAA2:0002045 name: toe 2 metatarsal pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005696 ! toe 2 mesenchyme [Term] id: EHDAA2:0002046 name: toe 2 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005696 ! toe 2 mesenchyme [Term] id: EHDAA2:0002050 name: toe 3 metatarsal pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005697 ! toe 3 mesenchyme [Term] id: EHDAA2:0002051 name: toe 3 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005697 ! toe 3 mesenchyme [Term] id: EHDAA2:0002055 name: toe 4 metatarsal pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005698 ! toe 4 mesenchyme [Term] id: EHDAA2:0002056 name: toe 4 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005698 ! toe 4 mesenchyme [Term] id: EHDAA2:0002060 name: toe 5 metatarsal pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005699 ! toe 5 mesenchyme [Term] id: EHDAA2:0002061 name: toe 5 phalanx pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003462 ! footplate mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0001445 ! skeleton of foot relationship: part_of UBERON:0005699 ! toe 5 mesenchyme [Term] id: EHDAA2:0002075 name: transverospinalis (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002036 ! striated muscle tissue relationship: develops_from EHDAA2:0002076 ! transverospinalis pre-muscle mass (embryonic human) relationship: part_of UBERON:0003897 ! axial muscle [Term] id: EHDAA2:0002076 name: transverospinalis pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0003897 ! axial muscle [Term] id: EHDAA2:0002079 name: trapezius pre-muscle mass (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: part_of UBERON:0008713 ! pectoral girdle and thoracic body wall skeletal muscle [Term] id: EHDAA2:0002100 name: ulna pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: EHDAA2:0002104 name: ultimobranchial body associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010257 ! 6th arch mesenchyme from neural crest relationship: part_of UBERON:0003092 ! ultimobranchial body [Term] id: EHDAA2:0002108 name: unsegmented head paraxial mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0009617 ! head paraxial mesenchyme [Term] id: EHDAA2:0002109 name: trunk unsegmented mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: EHDAA2:0002120 name: upper jaw future lip (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004599 ! maxillary process ectoderm (embryonic human) relationship: part_of UBERON:0001709 ! upper jaw [Term] id: EHDAA2:0002144 name: urogenital sinus pelvic part (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space [Term] id: EHDAA2:0002145 name: urogenital sinus phallic part (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space [Term] id: EHDAA2:0002146 name: urogenital sinus vesical part (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space [Term] id: EHDAA2:0002157 name: vagal X nerve (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001021 ! nerve relationship: develops_from EHDAA2:0004648 ! superior jugular ganglion (embryonic human) relationship: develops_from UBERON:0005363 ! inferior vagus X ganglion relationship: develops_from UBERON:0010126 ! future nucleus ambiguus relationship: develops_from UBERON:0010127 ! future dorsal motor nucleus of vagus relationship: part_of UBERON:0001785 ! cranial nerve [Term] id: EHDAA2:0002158 name: vagal X ganglion (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from UBERON:0005428 ! vagal neural crest relationship: part_of EHDAA2:0000226 ! CNS cranial ganglion (embryonic human) [Term] id: EHDAA2:0002159 name: vagal X inferior ganglion (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from EHDAA2:0002158 ! vagal X ganglion (embryonic human) relationship: part_of EHDAA2:0002158 ! vagal X ganglion (embryonic human) [Term] id: EHDAA2:0002161 name: vagal X nerve trunk recurrent laryngeal branch (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001021 ! nerve relationship: develops_from UBERON:0006308 ! vagal X nerve trunk relationship: part_of UBERON:0006308 ! vagal X nerve trunk [Term] id: EHDAA2:0002163 name: vagal X superior ganglion (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from EHDAA2:0002158 ! vagal X ganglion (embryonic human) relationship: part_of EHDAA2:0002158 ! vagal X ganglion (embryonic human) [Term] id: EHDAA2:0002165 name: valve mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0009751 ! cardiac mesenchyme [Term] id: EHDAA2:0002178 name: left ventricle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: EHDAA2:0002205 name: lung mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0003390 ! mesothelium of pleural cavity [Term] id: EHDAA2:0002218 name: early yolk sac stalk (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0003257 ! yolk sac endoderm relationship: part_of EHDAA2:0004563 ! early midgut region (embryonic human) [Term] id: EHDAA2:0002219 name: yolk sac stalk (embryonic human) namespace: http://www.xspan.org/obo.owl# synonym: "vitello-intestinal duct" RELATED [] is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0002218 ! early yolk sac stalk (embryonic human) relationship: part_of EHDAA2:0001615 ! future jejunum & ileum (embryonic human) [Term] id: EHDAA2:0002223 name: glandular system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003093 ! non-connected functional system (embryonic human) relationship: part_of UBERON:0000467 ! anatomical system [Term] id: EHDAA2:0003013 name: single-cell tissue (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000013 def: "Anatomical structure composed of a single cell." [AEO:MAH] is_a: UBERON:0000479 ! tissue [Term] id: EHDAA2:0003068 name: columnar epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000068 alt_id: CARO:0000068 def: "Unilaminar epithelium that consists of a single layer of columnar cells." [AEO:MAH] is_a: UBERON:0000490 ! unilaminar epithelium [Term] id: EHDAA2:0003093 name: non-connected functional system (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000093 alt_id: FBbt:00007278 def: "An anatomical group whose component structures share a common function." [JB:DEF] is_a: UBERON:0000477 ! anatomical cluster [Term] id: EHDAA2:0003126 name: larval anatomical structure (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000126 def: "An anatomical structure present in the larval form of an animal." [JB:DEF] is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0003127 name: apoptosing developing anatomical structure (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000127 def: "An embryonic anatomical structure undergoing apoptosis." [JB:DEF] is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0003129 name: functioning and developing embryonic structure (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000129 def: "An embryonic structure that displaysa physiological function." [JB:DEF] is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0003131 name: developing structure with stem cells (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000131 def: "Embryonic structure that contain stem cells which may contribute to its future maintenance or to that of another tissue." [JB:DEF] is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0003132 name: transitional embryonic anatomical structure (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000132 def: "A simple embryonic anatomical entity that will develop into one or more other structures." [JB:DEF] is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0003153 name: mesenchymal tissue with stem cells (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000153 is_a: EHDAA2:0003187 ! multi-tissue structure with stem cells (embryonic human) [Term] id: EHDAA2:0003162 name: ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000162 is_a: UBERON:0003102 ! surface structure [Term] id: EHDAA2:0003173 name: surface sense organ (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000173 def: "Multicellular anatomical structure with largely bona fide boundary that extends outwards from or is part of the organism surface and transduces some sensory stimulus to the nervous system." [JB:DEF] is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0007029 ! surface [Term] id: EHDAA2:0003174 name: gender-specific anatomical structure (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000174 def: "An anatomical structure present only in a specific gender." [JB:DEF] is_a: UBERON:0000061 ! anatomical structure [Term] id: EHDAA2:0003175 name: male anatomical structure (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000175 def: "An anatomical structure of the body present only in males." [JB:DEF] is_a: EHDAA2:0003174 ! gender-specific anatomical structure (embryonic human) [Term] id: EHDAA2:0003176 name: female anatomical structure (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000176 def: "An anatomical structure present only in females." [JB:DEF] is_a: EHDAA2:0003174 ! gender-specific anatomical structure (embryonic human) [Term] id: EHDAA2:0003179 name: joint-associated cartilage (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000179 is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0002217 ! synovial joint relationship: part_of UBERON:0002513 ! endochondral bone [Term] id: EHDAA2:0003180 name: non-joint-associated cartilage (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000180 is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0001434 ! skeletal system [Term] id: EHDAA2:0003185 name: exoskeletal tissue (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000185 is_a: UBERON:0007475 ! matrix-based tissue [Term] id: EHDAA2:0003187 name: multi-tissue structure with stem cells (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000187 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: EHDAA2:0003188 name: acellular fluid anatomical entity (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000188 def: "An acellular fluid portion of organism substance that is produced by the organism for some non-waste purpose." [JB:DEF] is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: EHDAA2:0003189 name: epithelial tissue with stem cells (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000189 is_a: EHDAA2:0003187 ! multi-tissue structure with stem cells (embryonic human) [Term] id: EHDAA2:0003238 name: trophoblastic lacunae (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004619 ! enclosed anatomical space (embryonic human) relationship: part_of EHDAA2:0000478 ! extraembryonic vascular system (embryonic human) [Term] id: EHDAA2:0003240 name: tail bud surface ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0002533 ! tail bud [Term] id: EHDAA2:0003242 name: connecting stalk blood islands (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0005667 ! connecting stalk mesoderm relationship: part_of UBERON:0002331 ! umbilical cord [Term] id: EHDAA2:0003243 name: primary yolk sac endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0008945 ! extraembryonic endoderm relationship: part_of UBERON:0008853 ! parietal yolk sac [Term] id: EHDAA2:0003244 name: chorionic epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000336 ! mural trophectoderm cytotrophoblast (embryonic human) relationship: part_of UBERON:0003124 ! chorion [Term] id: EHDAA2:0003246 name: primary yolk sac mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0005728 ! extraembryonic mesoderm relationship: part_of UBERON:0008853 ! parietal yolk sac [Term] id: EHDAA2:0003247 name: blood cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000479 ! tissue relationship: develops_from EHDAA2:0003452 ! liver haemangioblasts (embryonic human) relationship: develops_from EHDAA2:0004506 ! haematoblasts (embryonic human) relationship: part_of UBERON:0000178 ! blood [Term] id: EHDAA2:0003248 name: syncytium (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000203 def: "An anatomical entity of a single or a few multinucleated structures." [AEO:JB, CL:0000228] is_a: UBERON:0000479 ! tissue [Term] id: EHDAA2:0003249 name: pit (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000204 def: "An roughly circular indentation in a surface." [AEO:JB] is_a: UBERON:0003102 ! surface structure [Term] id: EHDAA2:0003255 name: row (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000210 alt_id: FBbt:00100152 def: "Anatomical group whose component structures are arranged in a row." [DBft:DOS] is_a: UBERON:0000480 ! anatomical group [Term] id: EHDAA2:0003256 name: non-connected developing functional system (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000211 alt_id: FBbt:0004003 def: "The sum of all the anlagen and primordia that will develop into a single functional system." [FBbt:DOS] is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0003257 name: trunk sclerotome (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000212 def: "The mesenchymal derivative of a somite that will migrate to surround the neural tube and form vertebrae." [AEO:JB] is_a: UBERON:0003089 ! sclerotome [Term] id: EHDAA2:0003258 name: bone condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: AEO:0000213 def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:JB] is_a: UBERON:0005856 ! mesenchymal condensation relationship: part_of UBERON:0001434 ! skeletal system [Term] id: EHDAA2:0003260 name: vertebra C3 cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003265 ! vertebra C3 pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000240 ! cervical vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003261 name: vertebra C4 cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0004003 ! vertebra C7 pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000240 ! cervical vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003262 name: vertebra C5 cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0004001 ! vertebra C5 pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000240 ! cervical vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003263 name: vertebra C6 cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0004002 ! vertebra C6 pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000240 ! cervical vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003264 name: vertebra C7 cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0004003 ! vertebra C7 pre-cartilage condensation (embryonic human) relationship: part_of EHDAA2:0000240 ! cervical vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003265 name: vertebra C3 pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0001787 ! sclerotome 07 (embryonic human) relationship: develops_from EHDAA2:0001788 ! sclerotome 08 (embryonic human) relationship: part_of EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003266 name: rib pre-cartilage condensation 01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001792 ! sclerotome 12 (embryonic human) relationship: develops_from EHDAA2:0001793 ! sclerotome 13 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003267 name: rib pre-cartilage condensation 02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001793 ! sclerotome 13 (embryonic human) relationship: develops_from EHDAA2:0001794 ! sclerotome 14 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003268 name: rib pre-cartilage condensation 03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001794 ! sclerotome 14 (embryonic human) relationship: develops_from EHDAA2:0001795 ! sclerotome 15 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003269 name: rib pre-cartilage condensation 04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001795 ! sclerotome 15 (embryonic human) relationship: develops_from EHDAA2:0001796 ! sclerotome 16 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003270 name: rib pre-cartilage condensation 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001796 ! sclerotome 16 (embryonic human) relationship: develops_from EHDAA2:0001797 ! sclerotome 17 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003271 name: rib pre-cartilage condensation 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001797 ! sclerotome 17 (embryonic human) relationship: develops_from EHDAA2:0001798 ! sclerotome 18 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003272 name: rib pre-cartilage condensation 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001798 ! sclerotome 18 (embryonic human) relationship: develops_from EHDAA2:0001799 ! sclerotome 19 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003273 name: rib pre-cartilage condensation 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001799 ! sclerotome 19 (embryonic human) relationship: develops_from EHDAA2:0001800 ! sclerotome 20 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003274 name: rib pre-cartilage condensation 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001800 ! sclerotome 20 (embryonic human) relationship: develops_from EHDAA2:0001801 ! sclerotome 21 (embryonic human) relationship: develops_from EHDAA2:0003309 ! thoracic vertebral pre-cartilage condensation T08 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003275 name: rib pre-cartilage condensation 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001801 ! sclerotome 21 (embryonic human) relationship: develops_from EHDAA2:0001802 ! sclerotome 22 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003276 name: rib pre-cartilage condensation 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001802 ! sclerotome 22 (embryonic human) relationship: develops_from EHDAA2:0001803 ! sclerotome 23 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003277 name: rib pre-cartilage condensation 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001803 ! sclerotome 23 (embryonic human) relationship: develops_from EHDAA2:0001804 ! sclerotome 24 (embryonic human) relationship: part_of UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA2:0003278 name: rib cartilage condensation 01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003266 ! rib pre-cartilage condensation 01 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003279 name: rib cartilage condensation 02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003267 ! rib pre-cartilage condensation 02 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003280 name: rib cartilage condensation 03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003268 ! rib pre-cartilage condensation 03 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003281 name: rib cartilage condensation 04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003269 ! rib pre-cartilage condensation 04 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003282 name: rib cartilage condensation 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003270 ! rib pre-cartilage condensation 05 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003283 name: rib cartilage condensation 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003271 ! rib pre-cartilage condensation 06 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003284 name: rib cartilage condensation 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003272 ! rib pre-cartilage condensation 07 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003285 name: rib cartilage condensation 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003273 ! rib pre-cartilage condensation 08 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003286 name: rib cartilage condensation 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003274 ! rib pre-cartilage condensation 09 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003287 name: rib cartilage condensation 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003275 ! rib pre-cartilage condensation 10 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003288 name: rib cartilage condensation 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003276 ! rib pre-cartilage condensation 11 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003289 name: rib cartilage condensation 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003277 ! rib pre-cartilage condensation 12 (embryonic human) relationship: part_of UBERON:0006288 ! rib cartilage condensation [Term] id: EHDAA2:0003290 name: vertebral cartilage condensation T01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003302 ! thoracic vertebral pre-cartilage condensation T01 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003291 name: vertebral cartilage condensation T02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003303 ! thoracic vertebral pre-cartilage condensation T02 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003292 name: vertebral cartilage condensation T03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003304 ! thoracic vertebral pre-cartilage condensation T03 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003293 name: vertebral cartilage condensation T04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003305 ! thoracic vertebral pre-cartilage condensation T04 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003294 name: vertebral cartilage condensation T05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003306 ! thoracic vertebral pre-cartilage condensation T05 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003295 name: vertebral cartilage condensation T06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003307 ! thoracic vertebral pre-cartilage condensation T06 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003296 name: vertebral cartilage condensation T07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003308 ! thoracic vertebral pre-cartilage condensation T07 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003297 name: vertebral cartilage condensation T08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003309 ! thoracic vertebral pre-cartilage condensation T08 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003298 name: vertebral cartilage condensation T09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003310 ! thoracic vertebral pre-cartilage condensation T09 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003299 name: vertebral cartilage condensation T10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003311 ! thoracic vertebral pre-cartilage condensation T10 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003300 name: vertebral cartilage condensation T11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003312 ! thoracic vertebral pre-cartilage condensation T11 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003301 name: vertebral cartilage condensation T12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003313 ! thoracic vertebral pre-cartilage condensation T12 (embryonic human) relationship: part_of EHDAA2:0002014 ! thoracic vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003302 name: thoracic vertebral pre-cartilage condensation T01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001792 ! sclerotome 12 (embryonic human) relationship: develops_from EHDAA2:0001793 ! sclerotome 13 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003303 name: thoracic vertebral pre-cartilage condensation T02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001793 ! sclerotome 13 (embryonic human) relationship: develops_from EHDAA2:0001794 ! sclerotome 14 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003304 name: thoracic vertebral pre-cartilage condensation T03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001794 ! sclerotome 14 (embryonic human) relationship: develops_from EHDAA2:0001795 ! sclerotome 15 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003305 name: thoracic vertebral pre-cartilage condensation T04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001795 ! sclerotome 15 (embryonic human) relationship: develops_from EHDAA2:0001796 ! sclerotome 16 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003306 name: thoracic vertebral pre-cartilage condensation T05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001796 ! sclerotome 16 (embryonic human) relationship: develops_from EHDAA2:0001797 ! sclerotome 17 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003307 name: thoracic vertebral pre-cartilage condensation T06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001797 ! sclerotome 17 (embryonic human) relationship: develops_from EHDAA2:0001798 ! sclerotome 18 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003308 name: thoracic vertebral pre-cartilage condensation T07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001798 ! sclerotome 18 (embryonic human) relationship: develops_from EHDAA2:0001799 ! sclerotome 19 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003309 name: thoracic vertebral pre-cartilage condensation T08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001799 ! sclerotome 19 (embryonic human) relationship: develops_from EHDAA2:0001800 ! sclerotome 20 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003310 name: thoracic vertebral pre-cartilage condensation T09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001800 ! sclerotome 20 (embryonic human) relationship: develops_from EHDAA2:0001801 ! sclerotome 21 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003311 name: thoracic vertebral pre-cartilage condensation T10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001801 ! sclerotome 21 (embryonic human) relationship: develops_from EHDAA2:0001802 ! sclerotome 22 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003312 name: thoracic vertebral pre-cartilage condensation T11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001802 ! sclerotome 22 (embryonic human) relationship: develops_from EHDAA2:0001803 ! sclerotome 23 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003313 name: thoracic vertebral pre-cartilage condensation T12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001803 ! sclerotome 23 (embryonic human) relationship: develops_from EHDAA2:0001804 ! sclerotome 24 (embryonic human) relationship: part_of EHDAA2:0002015 ! thoracic vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003314 name: costal pre-cartilage condensation 01 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003266 ! rib pre-cartilage condensation 01 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003315 name: costal pre-cartilage condensation 02 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003267 ! rib pre-cartilage condensation 02 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003316 name: costal pre-cartilage condensation 03 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003268 ! rib pre-cartilage condensation 03 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003317 name: costal pre-cartilage condensation 04 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003269 ! rib pre-cartilage condensation 04 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003318 name: costal pre-cartilage condensation 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003270 ! rib pre-cartilage condensation 05 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003319 name: costal pre-cartilage condensation 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003271 ! rib pre-cartilage condensation 06 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003320 name: costal pre-cartilage condensation 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003272 ! rib pre-cartilage condensation 07 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003321 name: costal pre-cartilage condensation 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003273 ! rib pre-cartilage condensation 08 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003322 name: costal pre-cartilage condensation 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003274 ! rib pre-cartilage condensation 09 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003323 name: costal pre-cartilage condensation 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003275 ! rib pre-cartilage condensation 10 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003324 name: costal pre-cartilage condensation 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003276 ! rib pre-cartilage condensation 11 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003325 name: costal pre-cartilage condensation 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0003277 ! rib pre-cartilage condensation 12 (embryonic human) relationship: part_of EHDAA2:0000321 ! costal pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003326 name: coccygeal vertebral cartilage condensation CC1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003330 ! coccygeal vertebral pre-cartilage condensation CC1 (embryonic human) relationship: part_of EHDAA2:0000260 ! coccygeal vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003327 name: coccygeal vertebral cartilage condensation CC2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003331 ! coccygeal vertebral pre-cartilage condensation CC2 (embryonic human) relationship: part_of EHDAA2:0000260 ! coccygeal vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003328 name: coccygeal vertebral cartilage condensation CC3 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003332 ! coccygeal vertebral pre-cartilage condensation CC3 (embryonic human) relationship: part_of EHDAA2:0000260 ! coccygeal vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003329 name: coccygeal vertebral cartilage condensation CC4 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003333 ! coccygeal vertebral pre-cartilage condensation CC4 (embryonic human) relationship: part_of EHDAA2:0000260 ! coccygeal vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003330 name: coccygeal vertebral pre-cartilage condensation CC1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001814 ! sclerotome 34 (embryonic human) relationship: develops_from EHDAA2:0001815 ! sclerotome 35 (embryonic human) relationship: part_of EHDAA2:0000265 ! cocycgeal vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003331 name: coccygeal vertebral pre-cartilage condensation CC2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001815 ! sclerotome 35 (embryonic human) relationship: develops_from EHDAA2:0001816 ! sclerotome 36 (embryonic human) relationship: part_of EHDAA2:0000265 ! cocycgeal vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003332 name: coccygeal vertebral pre-cartilage condensation CC3 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001816 ! sclerotome 36 (embryonic human) relationship: develops_from EHDAA2:0001817 ! sclerotome 37 (embryonic human) relationship: part_of EHDAA2:0000265 ! cocycgeal vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003333 name: coccygeal vertebral pre-cartilage condensation CC4 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001817 ! sclerotome 37 (embryonic human) relationship: develops_from EHDAA2:0001818 ! sclerotome 38 (embryonic human) relationship: part_of EHDAA2:0000265 ! cocycgeal vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003334 name: lumbar vertebral cartilage condensation L1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003339 ! lumbar vertebral pre-cartilage condensation L1 (embryonic human) relationship: part_of EHDAA2:0001038 ! lumbar vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003335 name: lumbar vertebral cartilage condensation L2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003340 ! lumbar vertebral pre-cartilage condensation L2 (embryonic human) relationship: part_of EHDAA2:0001038 ! lumbar vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003336 name: lumbar vertebral cartilage condensation L3 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003341 ! lumbar vertebral pre-cartilage condensation L3 (embryonic human) relationship: part_of EHDAA2:0001038 ! lumbar vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003337 name: lumbar vertebral cartilage condensation L4 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003342 ! lumbar vertebral pre-cartilage condensation L4 (embryonic human) relationship: part_of EHDAA2:0001038 ! lumbar vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003338 name: lumbar vertebral cartilage condensation L5 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003343 ! lumbar vertebral pre-cartilage condensation L5 (embryonic human) relationship: part_of EHDAA2:0001038 ! lumbar vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003339 name: lumbar vertebral pre-cartilage condensation L1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001804 ! sclerotome 24 (embryonic human) relationship: develops_from EHDAA2:0001805 ! sclerotome 25 (embryonic human) relationship: part_of EHDAA2:0001039 ! lumbar vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003340 name: lumbar vertebral pre-cartilage condensation L2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001805 ! sclerotome 25 (embryonic human) relationship: develops_from EHDAA2:0001806 ! sclerotome 26 (embryonic human) relationship: part_of EHDAA2:0001039 ! lumbar vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003341 name: lumbar vertebral pre-cartilage condensation L3 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001806 ! sclerotome 26 (embryonic human) relationship: develops_from EHDAA2:0001807 ! sclerotome 27 (embryonic human) relationship: part_of EHDAA2:0001039 ! lumbar vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003342 name: lumbar vertebral pre-cartilage condensation L4 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001807 ! sclerotome 27 (embryonic human) relationship: develops_from EHDAA2:0001808 ! sclerotome 28 (embryonic human) relationship: part_of EHDAA2:0001039 ! lumbar vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003343 name: lumbar vertebral pre-cartilage condensation L5 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001808 ! sclerotome 28 (embryonic human) relationship: develops_from EHDAA2:0001809 ! sclerotome 29 (embryonic human) relationship: part_of EHDAA2:0001039 ! lumbar vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003344 name: sacral vertebral pre-cartilage condensation S1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001809 ! sclerotome 29 (embryonic human) relationship: develops_from EHDAA2:0001810 ! sclerotome 30 (embryonic human) relationship: part_of EHDAA2:0001774 ! sacral vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003345 name: sacral vertebral pre-cartilage condensation S2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001810 ! sclerotome 30 (embryonic human) relationship: develops_from EHDAA2:0001811 ! sclerotome 31 (embryonic human) relationship: part_of EHDAA2:0001774 ! sacral vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003346 name: sacral vertebral pre-cartilage condensation S3 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001811 ! sclerotome 31 (embryonic human) relationship: develops_from EHDAA2:0001812 ! sclerotome 32 (embryonic human) relationship: part_of EHDAA2:0001774 ! sacral vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003347 name: sacral vertebral pre-cartilage condensation S4 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001812 ! sclerotome 32 (embryonic human) relationship: develops_from EHDAA2:0001813 ! sclerotome 33 (embryonic human) relationship: part_of EHDAA2:0001774 ! sacral vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003348 name: sacral vertebral pre-cartilage condensation S5 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001813 ! sclerotome 33 (embryonic human) relationship: develops_from EHDAA2:0001814 ! sclerotome 34 (embryonic human) relationship: part_of EHDAA2:0001774 ! sacral vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003349 name: sacral vertebral cartilage condensation S1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003344 ! sacral vertebral pre-cartilage condensation S1 (embryonic human) relationship: part_of EHDAA2:0001773 ! sacral vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003350 name: sacral vertebral cartilage condensation S2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003345 ! sacral vertebral pre-cartilage condensation S2 (embryonic human) relationship: part_of EHDAA2:0001773 ! sacral vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003351 name: sacral vertebral cartilage condensation S3 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003346 ! sacral vertebral pre-cartilage condensation S3 (embryonic human) relationship: part_of EHDAA2:0001773 ! sacral vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003352 name: sacral vertebral cartilage condensation S4 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003347 ! sacral vertebral pre-cartilage condensation S4 (embryonic human) relationship: part_of EHDAA2:0001773 ! sacral vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003353 name: sacral vertebral cartilage condensation S5 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003348 ! sacral vertebral pre-cartilage condensation S5 (embryonic human) relationship: part_of EHDAA2:0001773 ! sacral vertebral cartilage condensation group (embryonic human) [Term] id: EHDAA2:0003354 name: dermatome 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000345 ! dermomyotome 05 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003355 name: myotome 05 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000345 ! dermomyotome 05 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003356 name: dermatome 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000346 ! dermomyotome 06 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003357 name: myotome 06 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000346 ! dermomyotome 06 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003358 name: myotome 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000347 ! dermomyotome 07 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003359 name: dermatome 07 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000347 ! dermomyotome 07 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003360 name: dermatome 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000348 ! dermomyotome 08 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003361 name: myotome 08 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000348 ! dermomyotome 08 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003362 name: dermatome 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000349 ! dermomyotome 09 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003363 name: myotome 09 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000349 ! dermomyotome 09 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003364 name: myotome 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000350 ! dermomyotome 10 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003365 name: dermatome 10 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000350 ! dermomyotome 10 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003366 name: dermatome 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000351 ! dermomyotome 11 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003367 name: myotome 11 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000351 ! dermomyotome 11 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003368 name: dermatome 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000352 ! dermomyotome 12 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003369 name: myotome 12 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000352 ! dermomyotome 12 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003370 name: dermatome 13 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000353 ! dermomyotome 13 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003371 name: myotome 13 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000353 ! dermomyotome 13 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003372 name: dermatome 14 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000354 ! dermomyotome 14 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003373 name: myotome 14 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000354 ! dermomyotome 14 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003374 name: myotome 15 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000355 ! dermomyotome 15 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003375 name: dermatome 15 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000355 ! dermomyotome 15 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003376 name: dermatome 16 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000356 ! dermomyotome 16 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003377 name: myotome 16 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000356 ! dermomyotome 16 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003378 name: myotome 17 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000357 ! dermomyotome 17 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003379 name: dermatome 17 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000357 ! dermomyotome 17 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003380 name: dermatome 18 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000358 ! dermomyotome 18 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003381 name: myotome 18 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000358 ! dermomyotome 18 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003382 name: myotome 19 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000359 ! dermomyotome 19 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003383 name: dermatome 19 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000359 ! dermomyotome 19 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003384 name: myotome 20 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000360 ! dermomyotome 20 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003385 name: dermatome 20 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000360 ! dermomyotome 20 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003386 name: myotome 21 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000361 ! dermomyotome 21 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003387 name: dermatome 21 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000361 ! dermomyotome 21 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003388 name: dermatome 22 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000362 ! dermomyotome 22 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003389 name: myotome 22 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000362 ! dermomyotome 22 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003390 name: myotome 23 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000363 ! dermomyotome 23 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003391 name: dermatome 23 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000363 ! dermomyotome 23 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003392 name: myotome 24 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000364 ! dermomyotome 24 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003393 name: dermatome 24 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000364 ! dermomyotome 24 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003394 name: myotome 25 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000365 ! dermomyotome 25 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003395 name: dermatome 25 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000365 ! dermomyotome 25 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003396 name: dermatome 26 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000366 ! dermomyotome 26 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003397 name: myotome 26 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000366 ! dermomyotome 26 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003398 name: myotome 27 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000367 ! dermomyotome 27 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003399 name: dermatome 27 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000367 ! dermomyotome 27 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003400 name: myotome 28 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000368 ! dermomyotome 28 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003401 name: dermatome 28 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000368 ! dermomyotome 28 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003402 name: myotome 29 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000369 ! dermomyotome 29 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003403 name: dermatome 29 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000369 ! dermomyotome 29 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003404 name: dermatome 30 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000370 ! dermomyotome 30 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003405 name: myotome 30 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000370 ! dermomyotome 30 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003406 name: dermatome 31 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000371 ! dermomyotome 31 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003407 name: myotome 31 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000371 ! dermomyotome 31 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003408 name: myotome 32 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000372 ! dermomyotome 32 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003409 name: dermatome 32 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000372 ! dermomyotome 32 (embryonic human) [Term] id: EHDAA2:0003410 name: dermatome 33 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000373 ! dermomyotome 33 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003411 name: myotome 33 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000373 ! dermomyotome 33 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003412 name: myotome 34 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000374 ! dermomyotome 34 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003413 name: dermatome 34 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000374 ! dermomyotome 34 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003414 name: myotome 35 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000375 ! dermomyotome 35 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003415 name: dermatome 35 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000375 ! dermomyotome 35 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003416 name: myotome 36 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000376 ! dermomyotome 36 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003417 name: dermatome 36 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000376 ! dermomyotome 36 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003418 name: myotome 37 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000377 ! dermomyotome 37 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003419 name: dermatome 37 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000377 ! dermomyotome 37 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003420 name: myotome 38 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000378 ! dermomyotome 38 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003421 name: dermatome 38 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000378 ! dermomyotome 38 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003422 name: myotome 39 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003432 ! trunk myotome (embryonic human) relationship: develops_from EHDAA2:0000379 ! dermomyotome 39 (embryonic human) relationship: part_of EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) [Term] id: EHDAA2:0003423 name: dermatome 39 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: EHDAA2:0003429 ! trunk dermatome (embryonic human) relationship: develops_from EHDAA2:0000379 ! dermomyotome 39 (embryonic human) relationship: part_of EHDAA2:0003424 ! trunk and cervical dermatome group (embryonic human) [Term] id: EHDAA2:0003424 name: trunk and cervical dermatome group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: EHDAA2:0003425 name: trunk and cervical myotome group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: EHDAA2:0003426 name: trunk and cervical dermomyotome group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: EHDAA2:0003427 name: trunk and cervical sclerotome group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: EHDAA2:0003429 name: trunk dermatome (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004016 ! dermatome [Term] id: EHDAA2:0003430 name: head dermatome (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004016 ! dermatome [Term] id: EHDAA2:0003432 name: trunk myotome (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003082 ! myotome [Term] id: EHDAA2:0003433 name: head myotome (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003082 ! myotome [Term] id: EHDAA2:0003434 name: head dermomyotome (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000486 ! multilaminar epithelium [Term] id: EHDAA2:0003441 name: head sclerotome (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003089 ! sclerotome [Term] id: EHDAA2:0003442 name: head sclerotome group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0009617 ! head paraxial mesenchyme [Term] id: EHDAA2:0003444 name: head dermomyotome group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0009617 ! head paraxial mesenchyme [Term] id: EHDAA2:0003448 name: sphenoid greater wing pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0004421 ! mesenchyme from future diencephalic neural crest (embryonic human) relationship: develops_from EHDAA2:0004442 ! mesenchyme from mesencephalic neural crest (embryonic human) relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation [Term] id: EHDAA2:0003449 name: sphenoid lesser wing pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0004421 ! mesenchyme from future diencephalic neural crest (embryonic human) relationship: develops_from EHDAA2:0004442 ! mesenchyme from mesencephalic neural crest (embryonic human) relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation [Term] id: EHDAA2:0003450 name: sphenoid greater wing cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0003448 ! sphenoid greater wing pre-cartilage condensation (embryonic human) relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation [Term] id: EHDAA2:0003451 name: head mesenchyme from head sclerotome (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003442 ! head sclerotome group (embryonic human) [Term] id: EHDAA2:0003452 name: liver haemangioblasts (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003131 ! developing structure with stem cells (embryonic human) relationship: develops_from EHDAA2:0001831 ! septum transversum mesenchyme (embryonic human) relationship: part_of UBERON:0002107 ! liver [Term] id: EHDAA2:0003455 name: sinusoid system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0006877 ! vasculature of liver [Term] id: EHDAA2:0003456 name: early liver hepatic sinusoid linings (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001981 ! blood vessel relationship: develops_from EHDAA2:0003452 ! liver haemangioblasts (embryonic human) relationship: develops_from EHDAA2:0004525 ! liver capillary plexus (embryonic human) relationship: part_of EHDAA2:0003455 ! sinusoid system (embryonic human) [Term] id: EHDAA2:0003457 name: liver left lobe hepatic sinusoid linings (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001981 ! blood vessel relationship: develops_from EHDAA2:0003452 ! liver haemangioblasts (embryonic human) relationship: develops_from EHDAA2:0003456 ! early liver hepatic sinusoid linings (embryonic human) relationship: part_of EHDAA2:0003455 ! sinusoid system (embryonic human) relationship: part_of UBERON:0001115 ! left lobe of liver [Term] id: EHDAA2:0003458 name: liver right lobe hepatic sinusoid linings (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001981 ! blood vessel relationship: develops_from EHDAA2:0003452 ! liver haemangioblasts (embryonic human) relationship: develops_from EHDAA2:0003456 ! early liver hepatic sinusoid linings (embryonic human) relationship: part_of EHDAA2:0003455 ! sinusoid system (embryonic human) [Term] id: EHDAA2:0003459 name: liver right quadrate lobe hepatic sinusoid linings (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001981 ! blood vessel relationship: develops_from EHDAA2:0003452 ! liver haemangioblasts (embryonic human) relationship: develops_from EHDAA2:0003457 ! liver left lobe hepatic sinusoid linings (embryonic human) relationship: develops_from EHDAA2:0003458 ! liver right lobe hepatic sinusoid linings (embryonic human) relationship: part_of EHDAA2:0003458 ! liver right lobe hepatic sinusoid linings (embryonic human) relationship: part_of UBERON:0001114 ! right lobe of liver relationship: part_of UBERON:0001116 ! quadrate lobe of liver [Term] id: EHDAA2:0003460 name: liver right caudate lobe hepatic sinusoid linings (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001981 ! blood vessel relationship: develops_from EHDAA2:0003452 ! liver haemangioblasts (embryonic human) relationship: part_of EHDAA2:0003458 ! liver right lobe hepatic sinusoid linings (embryonic human) relationship: part_of UBERON:0001117 ! caudate lobe of liver [Term] id: EHDAA2:0003461 name: footplate mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003463 ! lower limb bud mesenchyme from myotomes (embryonic human) relationship: part_of UBERON:0003328 ! mesenchyme of footplate [Term] id: EHDAA2:0003462 name: footplate mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003464 ! lower limb bud mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0003328 ! mesenchyme of footplate [Term] id: EHDAA2:0003463 name: lower limb bud mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003398 ! myotome 27 (embryonic human) relationship: develops_from EHDAA2:0003400 ! myotome 28 (embryonic human) relationship: develops_from EHDAA2:0003402 ! myotome 29 (embryonic human) relationship: part_of EHDAA2:0001035 ! lower limb bud mesenchyme (embryonic human) [Term] id: EHDAA2:0003464 name: lower limb bud mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0001120 ! mesenchyme from somatopleure (embryonic human) relationship: part_of EHDAA2:0001035 ! lower limb bud mesenchyme (embryonic human) [Term] id: EHDAA2:0003466 name: hip mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003464 ! lower limb bud mesenchyme from somatopleure mesenchyme (embryonic human) relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: EHDAA2:0003467 name: hip mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003425 ! trunk and cervical myotome group (embryonic human) relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: EHDAA2:0003468 name: lower leg mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0005259 ! lower leg mesenchyme [Term] id: EHDAA2:0003469 name: lower leg mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003463 ! lower limb bud mesenchyme from myotomes (embryonic human) relationship: part_of UBERON:0005259 ! lower leg mesenchyme [Term] id: EHDAA2:0003470 name: upper limb bud mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0003413 ! forelimb bud mesenchyme [Term] id: EHDAA2:0003471 name: upper limb bud mesenchyeme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003377 ! myotome 16 (embryonic human) relationship: develops_from EHDAA2:0003378 ! myotome 17 (embryonic human) relationship: develops_from EHDAA2:0003381 ! myotome 18 (embryonic human) relationship: part_of UBERON:0003413 ! forelimb bud mesenchyme [Term] id: EHDAA2:0003472 name: handplate mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003470 ! upper limb bud mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0009523 ! mesenchyme of handplate [Term] id: EHDAA2:0003473 name: handplate mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003471 ! upper limb bud mesenchyeme from myotomes (embryonic human) relationship: part_of UBERON:0009523 ! mesenchyme of handplate [Term] id: EHDAA2:0003474 name: forearm mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003471 ! upper limb bud mesenchyeme from myotomes (embryonic human) relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: EHDAA2:0003475 name: forearm mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003470 ! upper limb bud mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: EHDAA2:0003476 name: upper arm mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003470 ! upper limb bud mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0005258 ! upper arm mesenchyme [Term] id: EHDAA2:0003477 name: upper arm mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003471 ! upper limb bud mesenchyeme from myotomes (embryonic human) relationship: part_of UBERON:0005258 ! upper arm mesenchyme [Term] id: EHDAA2:0003478 name: upper leg mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003463 ! lower limb bud mesenchyme from myotomes (embryonic human) relationship: part_of UBERON:0005254 ! upper leg mesenchyme [Term] id: EHDAA2:0003479 name: upper leg mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003464 ! lower limb bud mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0005254 ! upper leg mesenchyme [Term] id: EHDAA2:0003480 name: carpal region mesenchyme from myotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003471 ! upper limb bud mesenchyeme from myotomes (embryonic human) relationship: part_of UBERON:0003319 ! mesenchyme of carpal region [Term] id: EHDAA2:0003481 name: carpal region mesenchyme from somatopleure mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0003470 ! upper limb bud mesenchyme from somatopleure mesenchyme (embryonic human) relationship: part_of UBERON:0003319 ! mesenchyme of carpal region [Term] id: EHDAA2:0003482 name: toe 1 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0005719 ! footplate apical ectodermal ridge relationship: part_of UBERON:0003631 ! foot digit 1 [Term] id: EHDAA2:0003483 name: toe 2 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0005719 ! footplate apical ectodermal ridge relationship: part_of UBERON:0003632 ! foot digit 2 [Term] id: EHDAA2:0003484 name: toe 3 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0005719 ! footplate apical ectodermal ridge relationship: part_of UBERON:0003633 ! foot digit 3 [Term] id: EHDAA2:0003485 name: toe 4 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0005719 ! footplate apical ectodermal ridge relationship: part_of UBERON:0003634 ! foot digit 4 [Term] id: EHDAA2:0003486 name: toe 5 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0005719 ! footplate apical ectodermal ridge relationship: part_of UBERON:0003635 ! foot digit 5 [Term] id: EHDAA2:0003487 name: finger 1 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000405 ! digital region apical ectodermal ridge (embryonic human) relationship: part_of UBERON:0001463 ! hand digit 1 [Term] id: EHDAA2:0003488 name: finger 2 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000405 ! digital region apical ectodermal ridge (embryonic human) relationship: part_of UBERON:0003622 ! hand digit 2 [Term] id: EHDAA2:0003489 name: finger 3 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000405 ! digital region apical ectodermal ridge (embryonic human) relationship: part_of UBERON:0003623 ! hand digit 3 [Term] id: EHDAA2:0003490 name: finger 4 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000405 ! digital region apical ectodermal ridge (embryonic human) relationship: part_of UBERON:0003624 ! hand digit 4 [Term] id: EHDAA2:0003491 name: finger 5 apical ectodermal ridge (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000405 ! digital region apical ectodermal ridge (embryonic human) relationship: part_of UBERON:0003625 ! hand digit 5 [Term] id: EHDAA2:0003494 name: diaphragm body wall component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0010084 ! future diaphragm [Term] id: EHDAA2:0004000 name: vertebra C4 pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0001788 ! sclerotome 08 (embryonic human) relationship: develops_from EHDAA2:0001789 ! sclerotome 09 (embryonic human) relationship: part_of EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0004001 name: vertebra C5 pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0001789 ! sclerotome 09 (embryonic human) relationship: develops_from EHDAA2:0001790 ! sclerotome 10 (embryonic human) relationship: part_of EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0004002 name: vertebra C6 pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0001790 ! sclerotome 10 (embryonic human) relationship: develops_from EHDAA2:0001791 ! sclerotome 11 (embryonic human) relationship: part_of EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0004003 name: vertebra C7 pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from EHDAA2:0001791 ! sclerotome 11 (embryonic human) relationship: develops_from EHDAA2:0001792 ! sclerotome 12 (embryonic human) relationship: part_of EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0004004 name: axis pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001786 ! sclerotome 06 (embryonic human) relationship: develops_from EHDAA2:0001787 ! sclerotome 07 (embryonic human) relationship: part_of EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0004005 name: atlas pre-cartilage condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from EHDAA2:0001785 ! sclerotome 05 (embryonic human) relationship: develops_from EHDAA2:0001786 ! sclerotome 06 (embryonic human) relationship: part_of EHDAA2:0000241 ! cervical vertebral pre-cartilage condensation group (embryonic human) [Term] id: EHDAA2:0004006 name: mesonephros primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004053 ! migrating developing tissue (embryonic human) relationship: develops_from EHDAA2:0001537 ! hindgut primordial germ cells (embryonic human) relationship: part_of UBERON:0000080 ! mesonephros [Term] id: EHDAA2:0004007 name: cloacal membrane ectodermal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0006217 ! cloacal membrane [Term] id: EHDAA2:0004008 name: cloacal membrane endodermal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0009846 ! embryonic cloacal epithelium relationship: part_of UBERON:0003929 ! gut epithelium relationship: part_of UBERON:0006217 ! cloacal membrane [Term] id: EHDAA2:0004009 name: cloacal fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of EHDAA2:0004589 ! external anal region (embryonic human) [Term] id: EHDAA2:0004010 name: cloacal fold epithelial component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of EHDAA2:0004009 ! cloacal fold (embryonic human) relationship: part_of EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: EHDAA2:0004011 name: cloacal fold mesenchymal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001120 ! mesenchyme from somatopleure (embryonic human) relationship: part_of EHDAA2:0004009 ! cloacal fold (embryonic human) [Term] id: EHDAA2:0004012 name: anal fold (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004009 ! cloacal fold (embryonic human) relationship: part_of EHDAA2:0004589 ! external anal region (embryonic human) [Term] id: EHDAA2:0004013 name: anal fold epithelial component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004010 ! cloacal fold epithelial component (embryonic human) relationship: develops_from EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of EHDAA2:0004012 ! anal fold (embryonic human) relationship: part_of EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) [Term] id: EHDAA2:0004014 name: anal fold mesenchymal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004011 ! cloacal fold mesenchymal component (embryonic human) relationship: part_of EHDAA2:0004012 ! anal fold (embryonic human) [Term] id: EHDAA2:0004016 name: perineum ectodermal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004010 ! cloacal fold epithelial component (embryonic human) relationship: part_of EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of UBERON:0002356 ! perineum relationship: part_of UBERON:0002416 ! integumental system [Term] id: EHDAA2:0004017 name: perineum mesenchymal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004011 ! cloacal fold mesenchymal component (embryonic human) relationship: part_of UBERON:0002356 ! perineum [Term] id: EHDAA2:0004019 name: anal membrane ectodermal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004007 ! cloacal membrane ectodermal component (embryonic human) relationship: develops_from EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of UBERON:0009195 ! anal membrane [Term] id: EHDAA2:0004023 name: urogenital fold epithelial component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004010 ! cloacal fold epithelial component (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0004876 ! urogenital ridge [Term] id: EHDAA2:0004024 name: urogenital fold mesenchymal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0004011 ! cloacal fold mesenchymal component (embryonic human) relationship: part_of UBERON:0004876 ! urogenital ridge [Term] id: EHDAA2:0004026 name: urogenital membrane ectodermal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004007 ! cloacal membrane ectodermal component (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0006307 ! urogenital membrane [Term] id: EHDAA2:0004027 name: urogenital membrane endodermal component (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004008 ! cloacal membrane endodermal component (embryonic human) relationship: part_of UBERON:0006307 ! urogenital membrane relationship: part_of UBERON:0009844 ! urogenital sinus lumen [Term] id: EHDAA2:0004030 name: tricuspid valve leaflet mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004163 ! atrioventricular cushion mesenchyme (embryonic human) relationship: part_of EHDAA2:0002165 ! valve mesenchyme (embryonic human) relationship: part_of UBERON:0002134 ! tricuspid valve [Term] id: EHDAA2:0004031 name: tricuspid valve leaflet endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000281 ! left atrium endocardiium (embryonic human) relationship: part_of UBERON:0002134 ! tricuspid valve relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0004034 name: genital tubercle mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0001120 ! mesenchyme from somatopleure (embryonic human) relationship: part_of UBERON:0005876 ! genital tubercle [Term] id: EHDAA2:0004035 name: genital tubercle epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0005876 ! genital tubercle [Term] id: EHDAA2:0004036 name: clitoris epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004035 ! genital tubercle epithelium (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0002411 ! clitoris [Term] id: EHDAA2:0004037 name: clitoris mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0004034 ! genital tubercle mesenchyme (embryonic human) relationship: part_of UBERON:0002411 ! clitoris [Term] id: EHDAA2:0004038 name: penis mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0004034 ! genital tubercle mesenchyme (embryonic human) relationship: part_of UBERON:0000989 ! penis [Term] id: EHDAA2:0004040 name: female labial swelling mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0001120 ! mesenchyme from somatopleure (embryonic human) relationship: part_of EHDAA2:0000501 ! female labial swelling (embryonic human) [Term] id: EHDAA2:0004041 name: female labial swelling epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of EHDAA2:0000501 ! female labial swelling (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: EHDAA2:0004042 name: male genital swelling mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) relationship: develops_from EHDAA2:0001120 ! mesenchyme from somatopleure (embryonic human) relationship: part_of EHDAA2:0001049 ! male genital swelling (embryonic human) [Term] id: EHDAA2:0004043 name: male genital swelling epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003175 ! male anatomical structure (embryonic human) relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of EHDAA2:0001049 ! male genital swelling (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: EHDAA2:0004045 name: ovary mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003176 ! female anatomical structure (embryonic human) is_a: UBERON:0001136 ! mesothelium relationship: develops_from EHDAA2:0000718 ! indifferent gonad mesothelium (embryonic human) relationship: part_of UBERON:0000992 ! female gonad [Term] id: EHDAA2:0004047 name: mesonephros mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0005669 ! peritoneal cavity mesothelium relationship: part_of UBERON:0000080 ! mesonephros [Term] id: EHDAA2:0004048 name: early paramesonephric duct (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from EHDAA2:0004047 ! mesonephros mesothelium (embryonic human) relationship: part_of UBERON:0000080 ! mesonephros [Term] id: EHDAA2:0004050 name: gonadal ridge primordial germ cells (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004053 ! migrating developing tissue (embryonic human) relationship: develops_from EHDAA2:0004006 ! mesonephros primordial germ cells (embryonic human) relationship: part_of UBERON:0005294 ! genital ridge [Term] id: EHDAA2:0004053 name: migrating developing tissue (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "A simple coherent tissue or a localized population of similar cells that are actively migrating." [JB:def] is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0004054 name: reproductive cell population (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "Primordial germ cells and their derivatives." [JB:def] is_a: UBERON:0000479 ! tissue [Term] id: EHDAA2:0004055 name: 5-7 cervical nephrotomes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007503 ! epithelial vesicle relationship: develops_from UBERON:0005494 ! intermediate mesenchyme relationship: part_of UBERON:0002120 ! pronephros [Term] id: EHDAA2:0004056 name: urorectal septum mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0004591 ! internal anal region mesenchyme (embryonic human) relationship: part_of UBERON:0005760 ! urorectal septum [Term] id: EHDAA2:0004057 name: urorectal septum epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0009846 ! embryonic cloacal epithelium relationship: part_of UBERON:0005760 ! urorectal septum [Term] id: EHDAA2:0004059 name: bladder mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0004056 ! urorectal septum mesenchyme (embryonic human) relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: EHDAA2:0004064 name: primary interventricular foramen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004111 ! anatomical conduit [Term] id: EHDAA2:0004066 name: primitive heart tube lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space [Term] id: EHDAA2:0004067 name: endocardiogenic tissue (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from EHDAA2:0000214 ! cardiogenic splanchnopleure (embryonic human) relationship: part_of EHDAA2:0004147 ! cardiac system (embryonic human) [Term] id: EHDAA2:0004068 name: lower foregut region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001041 ! foregut [Term] id: EHDAA2:0004070 name: respiratory primordium epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0008947 ! respiratory primordium [Term] id: EHDAA2:0004071 name: respiratory primordium associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of UBERON:0008947 ! respiratory primordium [Term] id: EHDAA2:0004078 name: 6th arch mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of UBERON:0010031 ! 6th arch mesenchyme [Term] id: EHDAA2:0004079 name: 6th arch endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0003117 ! pharyngeal arch 6 relationship: part_of UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0009722 ! entire pharyngeal arch endoderm [Term] id: EHDAA2:0004080 name: 6th arch ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0003117 ! pharyngeal arch 6 [Term] id: EHDAA2:0004086 name: epiglottis epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005666 ! 4th arch endoderm relationship: part_of UBERON:0000388 ! epiglottis [Term] id: EHDAA2:0004087 name: epiglottis associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0005691 ! 4th arch mesenchyme relationship: part_of UBERON:0000388 ! epiglottis [Term] id: EHDAA2:0004090 name: lung bud epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from EHDAA2:0004070 ! respiratory primordium epithelium (embryonic human) relationship: part_of UBERON:0000118 ! lung bud [Term] id: EHDAA2:0004091 name: lung bud associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004093 ! respiratory primordium associated mesenchyme from splanchnopleure (embryonic human) relationship: part_of UBERON:0000118 ! lung bud [Term] id: EHDAA2:0004092 name: respiratory primordium associated mesenchyme from pharyngeal arch mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0005691 ! 4th arch mesenchyme relationship: develops_from UBERON:0010031 ! 6th arch mesenchyme relationship: part_of EHDAA2:0004071 ! respiratory primordium associated mesenchyme (embryonic human) [Term] id: EHDAA2:0004093 name: respiratory primordium associated mesenchyme from splanchnopleure (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of EHDAA2:0004071 ! respiratory primordium associated mesenchyme (embryonic human) [Term] id: EHDAA2:0004094 name: right lung caudal lobe bronchiole (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0005640 ! right lung caudal lobe epithelium relationship: part_of EHDAA2:0004098 ! right lung caudal lobe respiratory tree (embryonic human) [Term] id: EHDAA2:0004095 name: left lung caudal lobe respiratory tree (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: part_of UBERON:0008953 ! lower lobe of left lung [Term] id: EHDAA2:0004096 name: left lung cranial lobe respiratory tree (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: part_of UBERON:0008952 ! upper lobe of left lung [Term] id: EHDAA2:0004097 name: right lung cranial lobe respiratory tree (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: EHDAA2:0004098 name: right lung caudal lobe respiratory tree (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: EHDAA2:0004099 name: right lung accessory lobe respiratory tree (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007501 ! arborizing epithelial duct system relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: EHDAA2:0004105 name: nasal sac (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003249 ! pit (embryonic human) [Term] id: EHDAA2:0004106 name: nasal conchae mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009205 ! lateral nasal process mesenchyme relationship: part_of UBERON:0001762 ! nasal concha [Term] id: EHDAA2:0004107 name: nasal conchae epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005384 ! nasal cavity epithelium relationship: part_of UBERON:0001762 ! nasal concha relationship: part_of UBERON:0005384 ! nasal cavity epithelium [Term] id: EHDAA2:0004108 name: frontonasal process epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of EHDAA2:0000578 ! frontonasal process (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: EHDAA2:0004110 name: optic system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0000020 ! sense organ [Term] id: EHDAA2:0004111 name: optic vesicle proximal part (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0004128 ! optic vesicle relationship: part_of UBERON:0004128 ! optic vesicle [Term] id: EHDAA2:0004113 name: opthalmic vein (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004541 ! head and neck venous capillary plexus (embryonic human) relationship: part_of EHDAA2:0004110 ! optic system (embryonic human) relationship: part_of UBERON:0009141 ! craniocervical region vein [Term] id: EHDAA2:0004120 name: future membranous labyrinth lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004619 ! enclosed anatomical space (embryonic human) relationship: develops_from EHDAA2:0004121 ! otocyst lumen (embryonic human) [Term] id: EHDAA2:0004121 name: otocyst lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004620 ! lumen of epithelial sac (embryonic human) relationship: develops_from UBERON:0006273 ! otic pit [Term] id: EHDAA2:0004122 name: early endolymphatic appendage epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0005641 ! otocyst epithelium relationship: part_of EHDAA2:0000438 ! early endolymphatic appendage (embryonic human) [Term] id: EHDAA2:0004123 name: early endolymphatic appendage associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009500 ! associated mesenchyme of otocyst relationship: part_of EHDAA2:0000438 ! early endolymphatic appendage (embryonic human) [Term] id: EHDAA2:0004124 name: pancreas dorsal primordium mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001122 ! mesenchyme from splanchnopleure (embryonic human) relationship: part_of UBERON:0003923 ! dorsal pancreatic bud [Term] id: EHDAA2:0004125 name: pancreas ventral primordium mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0001122 ! mesenchyme from splanchnopleure (embryonic human) relationship: develops_from EHDAA2:0001831 ! septum transversum mesenchyme (embryonic human) relationship: part_of UBERON:0003924 ! ventral pancreatic bud [Term] id: EHDAA2:0004126 name: ventral pancreas head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004131 ! ventral pancreas mesenchyme (embryonic human) relationship: part_of EHDAA2:0001377 ! ventral pancreas head (embryonic human) [Term] id: EHDAA2:0004127 name: dorsal pancreas head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004128 ! dorsal pancreas mesenchyme (embryonic human) relationship: part_of EHDAA2:0001375 ! dorsal pancreas head (embryonic human) [Term] id: EHDAA2:0004128 name: dorsal pancreas mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004124 ! pancreas dorsal primordium mesenchyme (embryonic human) relationship: part_of UBERON:0009708 ! dorsal pancreas [Term] id: EHDAA2:0004129 name: pancreas body mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004128 ! dorsal pancreas mesenchyme (embryonic human) relationship: part_of UBERON:0001150 ! body of pancreas [Term] id: EHDAA2:0004130 name: pancreas tail mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004128 ! dorsal pancreas mesenchyme (embryonic human) relationship: part_of UBERON:0001151 ! tail of pancreas [Term] id: EHDAA2:0004131 name: ventral pancreas mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004125 ! pancreas ventral primordium mesenchyme (embryonic human) relationship: part_of UBERON:0009709 ! ventral pancreas [Term] id: EHDAA2:0004132 name: lower jaw epithelium from ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004137 ! oral epithelium from ectoderm (embryonic human) relationship: develops_from EHDAA2:0004600 ! mandibular process ectoderm (embryonic human) relationship: part_of EHDAA2:0004137 ! oral epithelium from ectoderm (embryonic human) relationship: part_of UBERON:0003236 ! epithelium of lower jaw [Term] id: EHDAA2:0004133 name: lower jaw epithelium from endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004136 ! oral epithelium from endoderm (embryonic human) relationship: part_of EHDAA2:0004136 ! oral epithelium from endoderm (embryonic human) relationship: part_of UBERON:0003236 ! epithelium of lower jaw [Term] id: EHDAA2:0004134 name: upper jaw epithelium from ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004108 ! frontonasal process epithelium (embryonic human) relationship: develops_from EHDAA2:0004137 ! oral epithelium from ectoderm (embryonic human) relationship: develops_from EHDAA2:0004599 ! maxillary process ectoderm (embryonic human) relationship: develops_from UBERON:0005233 ! medial-nasal process ectoderm relationship: develops_from UBERON:0009206 ! lateral nasal process surface ectoderm relationship: part_of UBERON:0003235 ! epithelium of upper jaw [Term] id: EHDAA2:0004135 name: upper jaw epithelium from endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004136 ! oral epithelium from endoderm (embryonic human) relationship: part_of UBERON:0003235 ! epithelium of upper jaw [Term] id: EHDAA2:0004136 name: oral epithelium from endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0007690 ! early pharyngeal endoderm relationship: part_of UBERON:0002424 ! oral epithelium [Term] id: EHDAA2:0004137 name: oral epithelium from ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001931 ! stomatodaeum rest of ectoderm (embryonic human) relationship: part_of UBERON:0002424 ! oral epithelium [Term] id: EHDAA2:0004140 name: adenohypophysis lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005082 ! tube lumen relationship: develops_from UBERON:0009974 ! lumen of Rathke's pouch [Term] id: EHDAA2:0004144 name: heart-associated blood vessels (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of EHDAA2:0004147 ! cardiac system (embryonic human) [Term] id: EHDAA2:0004146 name: primitive heart tube jelly (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000476 ! acellular anatomical structure relationship: develops_from EHDAA2:0000427 ! primitive heart tube myocardium (embryonic human) relationship: part_of UBERON:0005498 ! primitive heart tube [Term] id: EHDAA2:0004147 name: cardiac system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: EHDAA2:0004148 name: outflow tract neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0007529 ! loose mesenchyme tissue relationship: develops_from UBERON:0010255 ! 3rd arch mesenchyme from neural crest relationship: develops_from UBERON:0010256 ! 4th arch mesenchyme from neural crest relationship: develops_from UBERON:0010257 ! 6th arch mesenchyme from neural crest relationship: part_of UBERON:0009751 ! cardiac mesenchyme [Term] id: EHDAA2:0004149 name: atrioventricular region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000948 ! heart [Term] id: EHDAA2:0004151 name: atrioventricular canal region jelly (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000476 ! acellular anatomical structure relationship: develops_from EHDAA2:0004146 ! primitive heart tube jelly (embryonic human) relationship: part_of EHDAA2:0004149 ! atrioventricular region (embryonic human) [Term] id: EHDAA2:0004152 name: atrioventicular pre-cushion mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0002348 ! epicardium relationship: part_of EHDAA2:0004149 ! atrioventricular region (embryonic human) relationship: part_of UBERON:0009751 ! cardiac mesenchyme [Term] id: EHDAA2:0004156 name: left ventrical heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from EHDAA2:0000427 ! primitive heart tube myocardium (embryonic human) relationship: part_of EHDAA2:0002178 ! left ventricle (embryonic human) relationship: part_of UBERON:0002349 ! myocardium [Term] id: EHDAA2:0004157 name: right ventrical heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from EHDAA2:0000427 ! primitive heart tube myocardium (embryonic human) relationship: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0002349 ! myocardium [Term] id: EHDAA2:0004159 name: interatrial septum primum heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from EHDAA2:0000427 ! primitive heart tube myocardium (embryonic human) relationship: part_of UBERON:0002349 ! myocardium relationship: part_of UBERON:0004154 ! septum primum [Term] id: EHDAA2:0004160 name: interatrial septum secundum heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from UBERON:0003379 ! cardiac muscle of right atrium relationship: part_of UBERON:0002349 ! myocardium relationship: part_of UBERON:0004155 ! septum secundum [Term] id: EHDAA2:0004161 name: heart tissues (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0000948 ! heart [Term] id: EHDAA2:0004163 name: atrioventricular cushion mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0004152 ! atrioventicular pre-cushion mesenchyme (embryonic human) relationship: part_of UBERON:0002062 ! endocardial cushion relationship: part_of UBERON:0009751 ! cardiac mesenchyme [Term] id: EHDAA2:0004165 name: atrioventricular region endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000426 ! primitive heart tube endocardium (embryonic human) relationship: part_of EHDAA2:0004149 ! atrioventricular region (embryonic human) relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0004166 name: atrioventricular region heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from EHDAA2:0000427 ! primitive heart tube myocardium (embryonic human) relationship: part_of EHDAA2:0004149 ! atrioventricular region (embryonic human) relationship: part_of UBERON:0002349 ! myocardium [Term] id: EHDAA2:0004167 name: mitral valve leaflet mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004163 ! atrioventricular cushion mesenchyme (embryonic human) relationship: part_of EHDAA2:0002165 ! valve mesenchyme (embryonic human) relationship: part_of UBERON:0002135 ! mitral valve [Term] id: EHDAA2:0004168 name: left atrium auricular region heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from EHDAA2:0000285 ! left atrium future auricular region heart muscle (embryonic human) relationship: part_of UBERON:0002349 ! myocardium relationship: part_of UBERON:0006630 ! left atrium auricular region [Term] id: EHDAA2:0004169 name: right atrium auricular region heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from EHDAA2:0004170 ! right atrium future auricular region heart muscle (embryonic human) relationship: part_of UBERON:0002349 ! myocardium relationship: part_of UBERON:0006631 ! right atrium auricular region [Term] id: EHDAA2:0004170 name: right atrium future auricular region heart muscle (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from UBERON:0003379 ! cardiac muscle of right atrium relationship: part_of EHDAA2:0000298 ! right atrium future auricular region (embryonic human) relationship: part_of UBERON:0002349 ! myocardium [Term] id: EHDAA2:0004171 name: interatrial septum primum endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000426 ! primitive heart tube endocardium (embryonic human) relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0004154 ! septum primum [Term] id: EHDAA2:0004172 name: interatrial septum secundum endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0009129 ! right atrium endocardium relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0004155 ! septum secundum [Term] id: EHDAA2:0004173 name: left venous valve leaflet mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0002348 ! epicardium relationship: part_of EHDAA2:0000968 ! left venous valve (embryonic human) relationship: part_of EHDAA2:0002165 ! valve mesenchyme (embryonic human) [Term] id: EHDAA2:0004174 name: left venous valve leaflet endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0009129 ! right atrium endocardium relationship: part_of EHDAA2:0000968 ! left venous valve (embryonic human) relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0004175 name: right venous valve leaflet endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0009129 ! right atrium endocardium relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0010189 ! right atrium venous valve [Term] id: EHDAA2:0004176 name: right venous valve leaflet mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0002348 ! epicardium relationship: part_of EHDAA2:0002165 ! valve mesenchyme (embryonic human) relationship: part_of UBERON:0010189 ! right atrium venous valve [Term] id: EHDAA2:0004177 name: inferior vena cava valve leaflet mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004176 ! right venous valve leaflet mesenchyme (embryonic human) relationship: develops_from UBERON:0002348 ! epicardium relationship: part_of EHDAA2:0002165 ! valve mesenchyme (embryonic human) relationship: part_of UBERON:0005485 ! valve of inferior vena cava [Term] id: EHDAA2:0004178 name: inferior vena cava valve leaflet endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004175 ! right venous valve leaflet endocardium (embryonic human) relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0005485 ! valve of inferior vena cava [Term] id: EHDAA2:0004179 name: aortic valve leaflet endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001356 ! outflow tract future ascending aorta (embryonic human) relationship: part_of UBERON:0002137 ! aortic valve relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0004180 name: pulmonary valve leaflet endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001357 ! outflow tract future pulmonary artery (embryonic human) relationship: part_of UBERON:0002146 ! pulmonary valve relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0004181 name: heart lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space [Term] id: EHDAA2:0004186 name: aortico-pulmonary spiral septum mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004148 ! outflow tract neural crest (embryonic human) relationship: part_of UBERON:0006207 ! aortico-pulmonary spiral septum relationship: part_of UBERON:0009751 ! cardiac mesenchyme [Term] id: EHDAA2:0004187 name: aortico-pulmonary spiral septum endocardium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001355 ! outflow tract endocardium (embryonic human) relationship: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0006207 ! aortico-pulmonary spiral septum [Term] id: EHDAA2:0004200 name: sacral parasympathetic ganglia (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from EHDAA2:0001075 ! medial migration pathway NC-derived mesenchyme (embryonic human) relationship: part_of UBERON:0001808 ! parasympathetic ganglion [Term] id: EHDAA2:0004201 name: enteric nervous system ganglia (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion is_a: UBERON:0000480 ! anatomical group relationship: develops_from EHDAA2:0001075 ! medial migration pathway NC-derived mesenchyme (embryonic human) relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: EHDAA2:0004204 name: optic nervous system (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000467 ! anatomical system relationship: part_of EHDAA2:0004110 ! optic system (embryonic human) [Term] id: EHDAA2:0004205 name: branchial placode group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: EHDAA2:0004206 name: epibranchial placode 1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007497 ! developing epithelial placode relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of EHDAA2:0004205 ! branchial placode group (embryonic human) [Term] id: EHDAA2:0004207 name: epibranchial placode 2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007497 ! developing epithelial placode relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of EHDAA2:0004205 ! branchial placode group (embryonic human) [Term] id: EHDAA2:0004208 name: epibranchial placode 3 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007497 ! developing epithelial placode relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of EHDAA2:0004205 ! branchial placode group (embryonic human) [Term] id: EHDAA2:0004300 name: trunk dorsal root ganglions (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) is_a: UBERON:0000045 ! ganglion relationship: develops_from EHDAA2:0001901 ! spinal neural crest (embryonic human) relationship: part_of UBERON:0000044 ! dorsal root ganglion [Term] id: EHDAA2:0004301 name: trunk segmental spinal nerves (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001021 ! nerve relationship: develops_from EHDAA2:0001901 ! spinal neural crest (embryonic human) relationship: develops_from EHDAA2:0004300 ! trunk dorsal root ganglions (embryonic human) relationship: part_of UBERON:0001780 ! spinal nerve [Term] id: EHDAA2:0004302 name: cervical mesenchyme from cervical neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: develops_from EHDAA2:0001250 ! neural tube neural crest (embryonic human) relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: EHDAA2:0004303 name: cervical lateral migration pathway NC-derived mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0004302 ! cervical mesenchyme from cervical neural crest (embryonic human) relationship: part_of EHDAA2:0004302 ! cervical mesenchyme from cervical neural crest (embryonic human) [Term] id: EHDAA2:0004304 name: cervical medial migration pathway NC-derived (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) relationship: develops_from EHDAA2:0004302 ! cervical mesenchyme from cervical neural crest (embryonic human) relationship: part_of EHDAA2:0004302 ! cervical mesenchyme from cervical neural crest (embryonic human) [Term] id: EHDAA2:0004306 name: myelencephalon nucleus ambiguus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004307 ! early nucleus ambiguus (embryonic human) relationship: part_of EHDAA2:0000929 ! myelencephalon basal plate (embryonic human) [Term] id: EHDAA2:0004307 name: early nucleus ambiguus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003132 ! transitional embryonic anatomical structure (embryonic human) is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0010126 ! future nucleus ambiguus relationship: part_of EHDAA2:0004414 ! rhombomere 07 basal plate (embryonic human) relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004308 name: early trochlear nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004392 ! early isthmus basal plate (embryonic human) relationship: part_of EHDAA2:0004392 ! early isthmus basal plate (embryonic human) [Term] id: EHDAA2:0004309 name: early abducens nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) relationship: part_of EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) [Term] id: EHDAA2:0004313 name: vestibular VIII ganglion complex (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from UBERON:0002827 ! auditory ganglion relationship: part_of EHDAA2:0000226 ! CNS cranial ganglion (embryonic human) [Term] id: EHDAA2:0004314 name: spiral ganglion (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from UBERON:0005428 ! vagal neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] id: EHDAA2:0004315 name: future subarachnoid space (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004619 ! enclosed anatomical space (embryonic human) relationship: part_of UBERON:0002360 ! meninx [Term] id: EHDAA2:0004316 name: future arachnoid layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002360 ! meninx [Term] id: EHDAA2:0004320 name: early rhombomere group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: develops_from EHDAA2:0004321 ! pro-rhombomere group (embryonic human) relationship: part_of EHDAA2:0001630 ! rhombencephalon (embryonic human) [Term] id: EHDAA2:0004321 name: pro-rhombomere group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of EHDAA2:0001630 ! rhombencephalon (embryonic human) [Term] id: EHDAA2:0004322 name: rhombencephalon lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0004321 ! pro-rhombomere group (embryonic human) relationship: part_of EHDAA2:0001630 ! rhombencephalon (embryonic human) [Term] id: EHDAA2:0004323 name: rhombencephalon roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004321 ! pro-rhombomere group (embryonic human) relationship: part_of EHDAA2:0001630 ! rhombencephalon (embryonic human) [Term] id: EHDAA2:0004324 name: rhombencephalon floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001630 ! rhombencephalon (embryonic human) relationship: part_of EHDAA2:0001630 ! rhombencephalon (embryonic human) [Term] id: EHDAA2:0004325 name: early rhombomere 01 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001546 ! pro-rhombomere a lateral wall (embryonic human) relationship: part_of EHDAA2:0001639 ! early rhombomere 01 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004326 name: early rhombomere 02 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001546 ! pro-rhombomere a lateral wall (embryonic human) relationship: part_of EHDAA2:0001649 ! early rhombomere 02 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004327 name: early rhombomere 04 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001553 ! pro-rhombomere b lateral wall (embryonic human) relationship: part_of EHDAA2:0001669 ! early rhombomere 04 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004328 name: early rhombomere 03 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001546 ! pro-rhombomere a lateral wall (embryonic human) relationship: part_of EHDAA2:0001659 ! early rhombomere 03 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004329 name: early rhombomere 05 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001559 ! pro-rhombomere c lateral wall (embryonic human) relationship: part_of EHDAA2:0001679 ! early rhombomere 05 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004330 name: early rhombomere 06 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001559 ! pro-rhombomere c lateral wall (embryonic human) relationship: part_of EHDAA2:0001689 ! early rhombomere 06 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004331 name: early rhombomere 07 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001559 ! pro-rhombomere c lateral wall (embryonic human) relationship: part_of EHDAA2:0001699 ! early rhombomere 07 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004332 name: early rhombomere 08 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0001565 ! pro-rhombomere d lateral wall (embryonic human) relationship: part_of EHDAA2:0001708 ! early rhombomere 08 (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004333 name: early rhombomere 08 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001569 ! pro-rhombomere d roof plate (embryonic human) relationship: part_of EHDAA2:0001708 ! early rhombomere 08 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004334 name: early rhombomere 07 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001562 ! pro-rhombomere c roof plate (embryonic human) relationship: part_of EHDAA2:0001699 ! early rhombomere 07 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004335 name: early rhombomere 06 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001562 ! pro-rhombomere c roof plate (embryonic human) relationship: part_of EHDAA2:0001689 ! early rhombomere 06 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004336 name: early rhombomere 05 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001562 ! pro-rhombomere c roof plate (embryonic human) relationship: part_of EHDAA2:0001679 ! early rhombomere 05 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004337 name: early rhombomere 04 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001556 ! pro-rhombomere b roof plate (embryonic human) relationship: part_of EHDAA2:0001669 ! early rhombomere 04 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004338 name: early rhombomere 03 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001550 ! pro-rhombomere a roof plate (embryonic human) relationship: part_of EHDAA2:0001659 ! early rhombomere 03 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004339 name: early rhombomere 02 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001550 ! pro-rhombomere a roof plate (embryonic human) relationship: part_of EHDAA2:0001649 ! early rhombomere 02 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004340 name: early rhombomere 01 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001569 ! pro-rhombomere d roof plate (embryonic human) relationship: part_of EHDAA2:0001639 ! early rhombomere 01 (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004341 name: early rhombomere 01 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001545 ! pro-rhombomere a floor plate (embryonic human) relationship: part_of EHDAA2:0001639 ! early rhombomere 01 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004342 name: early rhombomere 02 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001545 ! pro-rhombomere a floor plate (embryonic human) relationship: part_of EHDAA2:0001649 ! early rhombomere 02 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004343 name: early rhombomere 03 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001545 ! pro-rhombomere a floor plate (embryonic human) relationship: part_of EHDAA2:0001659 ! early rhombomere 03 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004344 name: early rhombomere 04 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001552 ! pro-rhombomere b floor plate (embryonic human) relationship: part_of EHDAA2:0001669 ! early rhombomere 04 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004345 name: early rhombomere 05 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001558 ! pro-rhombomere c floor plate (embryonic human) relationship: part_of EHDAA2:0001679 ! early rhombomere 05 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004346 name: early rhombomere 06 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001558 ! pro-rhombomere c floor plate (embryonic human) relationship: part_of EHDAA2:0001689 ! early rhombomere 06 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004347 name: early rhombomere 07 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001558 ! pro-rhombomere c floor plate (embryonic human) relationship: part_of EHDAA2:0001699 ! early rhombomere 07 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004348 name: early rhombomere 08 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0001564 ! pro-rhombomere d floor plate (embryonic human) relationship: part_of EHDAA2:0001708 ! early rhombomere 08 (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004349 name: isthmus primordium floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0004341 ! early rhombomere 01 floor plate (embryonic human) relationship: part_of EHDAA2:0001632 ! isthmus primordium (embryonic human) relationship: part_of EHDAA2:0004324 ! rhombencephalon floor plate (embryonic human) [Term] id: EHDAA2:0004350 name: isthmus primordium roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004340 ! early rhombomere 01 roof plate (embryonic human) relationship: part_of EHDAA2:0001632 ! isthmus primordium (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004351 name: isthmus primordium lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0004325 ! early rhombomere 01 lateral wall (embryonic human) relationship: part_of EHDAA2:0001632 ! isthmus primordium (embryonic human) relationship: part_of EHDAA2:0004322 ! rhombencephalon lateral wall (embryonic human) [Term] id: EHDAA2:0004352 name: mesomere group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0001891 ! midbrain [Term] id: EHDAA2:0004353 name: mesomere M1 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of EHDAA2:0004352 ! mesomere group (embryonic human) [Term] id: EHDAA2:0004354 name: mesomere M2 (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of EHDAA2:0004352 ! mesomere group (embryonic human) [Term] id: EHDAA2:0004355 name: mesomere M1 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0001178 ! midbrain ventricular layer (embryonic human) relationship: part_of EHDAA2:0004366 ! mesomere M1 lateral wall (embryonic human) [Term] id: EHDAA2:0004356 name: mesomere M1 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: develops_from UBERON:0005495 ! midbrain lateral wall relationship: part_of EHDAA2:0004366 ! mesomere M1 lateral wall (embryonic human) relationship: part_of UBERON:0009581 ! midbrain mantle layer [Term] id: EHDAA2:0004357 name: mesomere M1 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0001173 ! midbrain marginal layer (embryonic human) relationship: part_of EHDAA2:0004366 ! mesomere M1 lateral wall (embryonic human) [Term] id: EHDAA2:0004358 name: mesomere M2 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0001178 ! midbrain ventricular layer (embryonic human) relationship: part_of EHDAA2:0004367 ! mesomere M2 lateral wall (embryonic human) [Term] id: EHDAA2:0004359 name: mesomere M2 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0001173 ! midbrain marginal layer (embryonic human) relationship: part_of EHDAA2:0004367 ! mesomere M2 lateral wall (embryonic human) [Term] id: EHDAA2:0004360 name: mesomere M2 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0004367 ! mesomere M2 lateral wall (embryonic human) relationship: part_of UBERON:0009581 ! midbrain mantle layer [Term] id: EHDAA2:0004363 name: future spinal cord lumen (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005082 ! tube lumen relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: EHDAA2:0004364 name: mesomere M1 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000621 ! mesencephalon roof plate (embryonic human) relationship: part_of EHDAA2:0004353 ! mesomere M1 (embryonic human) relationship: part_of UBERON:0003299 ! roof plate of midbrain [Term] id: EHDAA2:0004365 name: mesomere M1 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000616 ! mesencephalon floor plate (embryonic human) relationship: part_of EHDAA2:0004353 ! mesomere M1 (embryonic human) relationship: part_of UBERON:0003307 ! floor plate of midbrain [Term] id: EHDAA2:0004366 name: mesomere M1 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0004353 ! mesomere M1 (embryonic human) [Term] id: EHDAA2:0004367 name: mesomere M2 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000617 ! mesencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0004354 ! mesomere M2 (embryonic human) [Term] id: EHDAA2:0004368 name: mesomere M2 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000616 ! mesencephalon floor plate (embryonic human) relationship: part_of EHDAA2:0004354 ! mesomere M2 (embryonic human) relationship: part_of UBERON:0003307 ! floor plate of midbrain [Term] id: EHDAA2:0004369 name: mesomere M2 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000621 ! mesencephalon roof plate (embryonic human) relationship: part_of EHDAA2:0004354 ! mesomere M2 (embryonic human) relationship: part_of UBERON:0003299 ! roof plate of midbrain [Term] id: EHDAA2:0004370 name: rhombomere 01 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0001642 ! rhombomere 01 mantle layer (embryonic human) relationship: part_of EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001642 ! rhombomere 01 mantle layer (embryonic human) [Term] id: EHDAA2:0004371 name: rhombomere 01 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0001642 ! rhombomere 01 mantle layer (embryonic human) relationship: part_of EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) relationship: part_of EHDAA2:0001642 ! rhombomere 01 mantle layer (embryonic human) [Term] id: EHDAA2:0004372 name: mesomere M1 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0005495 ! midbrain lateral wall relationship: part_of EHDAA2:0004356 ! mesomere M1 mantle layer (embryonic human) [Term] id: EHDAA2:0004373 name: mesomere M1 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0005495 ! midbrain lateral wall relationship: part_of EHDAA2:0004356 ! mesomere M1 mantle layer (embryonic human) [Term] id: EHDAA2:0004374 name: midbrain alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004372 ! mesomere M1 alar plate (embryonic human) relationship: develops_from EHDAA2:0004376 ! mesomere M2 alar plate (embryonic human) relationship: part_of UBERON:0009581 ! midbrain mantle layer [Term] id: EHDAA2:0004375 name: midbrain basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004373 ! mesomere M1 basal plate (embryonic human) relationship: develops_from EHDAA2:0004377 ! mesomere M2 basal plate (embryonic human) relationship: part_of UBERON:0009581 ! midbrain mantle layer [Term] id: EHDAA2:0004376 name: mesomere M2 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004367 ! mesomere M2 lateral wall (embryonic human) relationship: part_of EHDAA2:0004360 ! mesomere M2 mantle layer (embryonic human) [Term] id: EHDAA2:0004377 name: mesomere M2 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004367 ! mesomere M2 lateral wall (embryonic human) relationship: part_of EHDAA2:0004360 ! mesomere M2 mantle layer (embryonic human) [Term] id: EHDAA2:0004378 name: early rhombomere 01 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004325 ! early rhombomere 01 lateral wall (embryonic human) relationship: part_of EHDAA2:0004325 ! early rhombomere 01 lateral wall (embryonic human) [Term] id: EHDAA2:0004379 name: early rhombomere 02 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004326 ! early rhombomere 02 lateral wall (embryonic human) relationship: part_of EHDAA2:0004326 ! early rhombomere 02 lateral wall (embryonic human) [Term] id: EHDAA2:0004380 name: early rhombomere 03 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004328 ! early rhombomere 03 lateral wall (embryonic human) relationship: part_of EHDAA2:0004328 ! early rhombomere 03 lateral wall (embryonic human) [Term] id: EHDAA2:0004381 name: early rhombomere 04 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004327 ! early rhombomere 04 lateral wall (embryonic human) relationship: part_of EHDAA2:0004327 ! early rhombomere 04 lateral wall (embryonic human) [Term] id: EHDAA2:0004382 name: early rhombomere 05 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004329 ! early rhombomere 05 lateral wall (embryonic human) relationship: part_of EHDAA2:0004329 ! early rhombomere 05 lateral wall (embryonic human) [Term] id: EHDAA2:0004383 name: early rhombomere 06 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004330 ! early rhombomere 06 lateral wall (embryonic human) relationship: part_of EHDAA2:0004330 ! early rhombomere 06 lateral wall (embryonic human) [Term] id: EHDAA2:0004384 name: early rhombomere 07 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004331 ! early rhombomere 07 lateral wall (embryonic human) relationship: part_of EHDAA2:0004331 ! early rhombomere 07 lateral wall (embryonic human) [Term] id: EHDAA2:0004385 name: early rhombomere 08 marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004332 ! early rhombomere 08 lateral wall (embryonic human) relationship: part_of EHDAA2:0004332 ! early rhombomere 08 lateral wall (embryonic human) [Term] id: EHDAA2:0004386 name: isthmus primordium marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004378 ! early rhombomere 01 marginal layer (embryonic human) relationship: part_of EHDAA2:0004351 ! isthmus primordium lateral wall (embryonic human) [Term] id: EHDAA2:0004387 name: rhombomere 03 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0001662 ! rhombomere 03 mantle layer (embryonic human) relationship: part_of EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001662 ! rhombomere 03 mantle layer (embryonic human) [Term] id: EHDAA2:0004388 name: rhombomere 03 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0001662 ! rhombomere 03 mantle layer (embryonic human) relationship: part_of EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) relationship: part_of EHDAA2:0001662 ! rhombomere 03 mantle layer (embryonic human) [Term] id: EHDAA2:0004389 name: rhombomere 02 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0001652 ! rhombomere 02 mantle layer (embryonic human) relationship: part_of EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001652 ! rhombomere 02 mantle layer (embryonic human) [Term] id: EHDAA2:0004390 name: rhombomere 02 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0001652 ! rhombomere 02 mantle layer (embryonic human) relationship: part_of EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) relationship: part_of EHDAA2:0001652 ! rhombomere 02 mantle layer (embryonic human) [Term] id: EHDAA2:0004391 name: early isthmus alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000760 ! early isthmus mantle layer (embryonic human) relationship: part_of EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0000760 ! early isthmus mantle layer (embryonic human) [Term] id: EHDAA2:0004392 name: early isthmus basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000760 ! early isthmus mantle layer (embryonic human) relationship: part_of EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) relationship: part_of EHDAA2:0000760 ! early isthmus mantle layer (embryonic human) [Term] id: EHDAA2:0004393 name: early isthmus cerebellar primordium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000760 ! early isthmus mantle layer (embryonic human) relationship: part_of EHDAA2:0000231 ! cerebellum primordium (embryonic human) relationship: part_of EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0004391 ! early isthmus alar plate (embryonic human) [Term] id: EHDAA2:0004395 name: isthmus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001895 ! metencephalon [Term] id: EHDAA2:0004396 name: isthmus floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000758 ! early isthmus floor plate (embryonic human) relationship: part_of EHDAA2:0004395 ! isthmus (embryonic human) [Term] id: EHDAA2:0004397 name: isthmus lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of EHDAA2:0004395 ! isthmus (embryonic human) [Term] id: EHDAA2:0004398 name: isthmus marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000761 ! early isthmus marginal layer (embryonic human) relationship: part_of EHDAA2:0004397 ! isthmus lateral wall (embryonic human) disjoint_from: EHDAA2:0004399 ! isthmus mantle layer (embryonic human) disjoint_from: EHDAA2:0004400 ! isthmus ventricular layer (embryonic human) [Term] id: EHDAA2:0004399 name: isthmus mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0000760 ! early isthmus mantle layer (embryonic human) relationship: part_of EHDAA2:0004397 ! isthmus lateral wall (embryonic human) disjoint_from: EHDAA2:0004398 ! isthmus marginal layer (embryonic human) disjoint_from: EHDAA2:0004400 ! isthmus ventricular layer (embryonic human) [Term] id: EHDAA2:0004400 name: isthmus ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0000766 ! early isthmus ventricular layer (embryonic human) relationship: part_of EHDAA2:0004397 ! isthmus lateral wall (embryonic human) disjoint_from: EHDAA2:0004398 ! isthmus marginal layer (embryonic human) disjoint_from: EHDAA2:0004399 ! isthmus mantle layer (embryonic human) [Term] id: EHDAA2:0004401 name: cerebellum roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000765 ! early isthmus roof plate (embryonic human) relationship: develops_from UBERON:0005568 ! rhombomere 1 roof plate relationship: part_of UBERON:0002037 ! cerebellum [Term] id: EHDAA2:0004402 name: isthmus basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004392 ! early isthmus basal plate (embryonic human) relationship: part_of EHDAA2:0004399 ! isthmus mantle layer (embryonic human) [Term] id: EHDAA2:0004403 name: isthmus alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004391 ! early isthmus alar plate (embryonic human) relationship: part_of EHDAA2:0004399 ! isthmus mantle layer (embryonic human) [Term] id: EHDAA2:0004404 name: cerebellum lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of UBERON:0002037 ! cerebellum [Term] id: EHDAA2:0004405 name: pons choroid plexus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure [Term] id: EHDAA2:0004406 name: pons choroid plexus capillaries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from UBERON:0005720 ! hindbrain venous system relationship: part_of EHDAA2:0004405 ! pons choroid plexus (embryonic human) [Term] id: EHDAA2:0004407 name: pons choroid plexus epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0001157 ! pons ventricular layer (embryonic human) relationship: part_of EHDAA2:0004405 ! pons choroid plexus (embryonic human) [Term] id: EHDAA2:0004408 name: rhombomere 04 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004327 ! early rhombomere 04 lateral wall (embryonic human) relationship: part_of EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001672 ! rhombomere 04 mantle layer (embryonic human) [Term] id: EHDAA2:0004409 name: rhombomere 04 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004327 ! early rhombomere 04 lateral wall (embryonic human) relationship: part_of EHDAA2:0001672 ! rhombomere 04 mantle layer (embryonic human) relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004410 name: rhombomere 05 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004329 ! early rhombomere 05 lateral wall (embryonic human) relationship: part_of EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001682 ! rhombomere 05 mantle layer (embryonic human) [Term] id: EHDAA2:0004411 name: rhombomere 05 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004329 ! early rhombomere 05 lateral wall (embryonic human) relationship: part_of EHDAA2:0001682 ! rhombomere 05 mantle layer (embryonic human) relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004412 name: rhombomere 06 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004330 ! early rhombomere 06 lateral wall (embryonic human) relationship: part_of EHDAA2:0001692 ! rhombomere 06 mantle layer (embryonic human) relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004413 name: rhombomere 06 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004330 ! early rhombomere 06 lateral wall (embryonic human) relationship: part_of EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001692 ! rhombomere 06 mantle layer (embryonic human) [Term] id: EHDAA2:0004414 name: rhombomere 07 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004331 ! early rhombomere 07 lateral wall (embryonic human) relationship: part_of EHDAA2:0001702 ! rhombomere 07 mantle layer (embryonic human) relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004415 name: rhombomere 07 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004331 ! early rhombomere 07 lateral wall (embryonic human) relationship: part_of EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001702 ! rhombomere 07 mantle layer (embryonic human) [Term] id: EHDAA2:0004416 name: rhombomere 08 basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004332 ! early rhombomere 08 lateral wall (embryonic human) relationship: part_of EHDAA2:0001711 ! rhombomere 08 mantle layer (embryonic human) relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004417 name: rhombomere 08 alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004332 ! early rhombomere 08 lateral wall (embryonic human) relationship: part_of EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0001711 ! rhombomere 08 mantle layer (embryonic human) [Term] id: EHDAA2:0004421 name: mesenchyme from future diencephalic neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: develops_from UBERON:0003851 ! diencephalon neural crest relationship: part_of UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: EHDAA2:0004424 name: future telencephalon (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006240 ! future forebrain [Term] id: EHDAA2:0004425 name: future telencephalon medium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000663 ! future telencephalon lateral wall (embryonic human) relationship: part_of EHDAA2:0004424 ! future telencephalon (embryonic human) [Term] id: EHDAA2:0004426 name: future diencephalon D1 neuromere (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006222 ! future diencephalon [Term] id: EHDAA2:0004427 name: future diencephalon D2 neuromere (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006222 ! future diencephalon [Term] id: EHDAA2:0004428 name: future diencephalon D1 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000665 ! prosencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0004426 ! future diencephalon D1 neuromere (embryonic human) [Term] id: EHDAA2:0004429 name: future diencephalon D1 chiasmatic plate (embryonic human) namespace: http://www.xspan.org/obo.owl# synonym: "future diencephalon D1 floor plate" EXACT [] is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000665 ! prosencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0004426 ! future diencephalon D1 neuromere (embryonic human) [Term] id: EHDAA2:0004430 name: future diencephalon D1 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000665 ! prosencephalon neural fold (embryonic human) relationship: part_of EHDAA2:0004426 ! future diencephalon D1 neuromere (embryonic human) [Term] id: EHDAA2:0004432 name: non-optic region of D1 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0004428 ! future diencephalon D1 lateral wall (embryonic human) relationship: part_of EHDAA2:0004428 ! future diencephalon D1 lateral wall (embryonic human) [Term] id: EHDAA2:0004433 name: optic sulcus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0006846 ! groove [Term] id: EHDAA2:0004434 name: neurohypohysial region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004435 ! early neurohypohysial region (embryonic human) relationship: part_of EHDAA2:0004460 ! diencephalon D2 floor plate (embryonic human) relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: EHDAA2:0004435 name: early neurohypohysial region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000601 ! future diencephalon D2 floor plate (embryonic human) relationship: part_of EHDAA2:0000601 ! future diencephalon D2 floor plate (embryonic human) relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: EHDAA2:0004436 name: future telencephalon medium anterior wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: part_of EHDAA2:0004425 ! future telencephalon medium (embryonic human) [Term] id: EHDAA2:0004437 name: future telencephalon medium floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: part_of EHDAA2:0004425 ! future telencephalon medium (embryonic human) [Term] id: EHDAA2:0004438 name: commisural plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0004437 ! future telencephalon medium floor plate (embryonic human) relationship: part_of EHDAA2:0001989 ! telencephalon medium (embryonic human) [Term] id: EHDAA2:0004439 name: telencephalon medium anterior wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004436 ! future telencephalon medium anterior wall (embryonic human) relationship: part_of EHDAA2:0001989 ! telencephalon medium (embryonic human) [Term] id: EHDAA2:0004440 name: ependymal fluid (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003188 ! acellular fluid anatomical entity (embryonic human) [Term] id: EHDAA2:0004441 name: cerbrospnal fluid (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003188 ! acellular fluid anatomical entity (embryonic human) [Term] id: EHDAA2:0004442 name: mesenchyme from mesencephalic neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004700 ! developing mesenchymal structure (embryonic human) relationship: develops_from UBERON:0003849 ! mesencephalic neural crest relationship: part_of UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: EHDAA2:0004444 name: early amygdaloid body (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000235 ! paleopallium mantle layer (embryonic human) relationship: part_of EHDAA2:0000235 ! paleopallium mantle layer (embryonic human) [Term] id: EHDAA2:0004445 name: telencephalon basal area (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: EHDAA2:0004446 name: telencephalon basal area mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0001986 ! telencephalon mantle layer (embryonic human) relationship: part_of EHDAA2:0004445 ! telencephalon basal area (embryonic human) [Term] id: EHDAA2:0004447 name: telencephalon basal area marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001988 ! telencephalon marginal layer (embryonic human) relationship: part_of EHDAA2:0004445 ! telencephalon basal area (embryonic human) [Term] id: EHDAA2:0004448 name: telencephalon basal area ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001996 ! telencephalon ventricular layer (embryonic human) relationship: part_of EHDAA2:0004445 ! telencephalon basal area (embryonic human) [Term] id: EHDAA2:0004451 name: lateral ventricle choroid plexus capillaries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0004452 ! telencephalon pia mater capillaries (embryonic human) relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle [Term] id: EHDAA2:0004452 name: telencephalon pia mater capillaries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0000185 ! brain venous system (embryonic human) [Term] id: EHDAA2:0004453 name: primary meninx (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0002360 ! meninx [Term] id: EHDAA2:0004454 name: diencephalon D1 neuromere (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: EHDAA2:0004455 name: diencephalon D2 neuromere (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: EHDAA2:0004456 name: diencephalon D1 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0004428 ! future diencephalon D1 lateral wall (embryonic human) relationship: part_of EHDAA2:0004454 ! diencephalon D1 neuromere (embryonic human) [Term] id: EHDAA2:0004457 name: diencephalon D1 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004430 ! future diencephalon D1 roof plate (embryonic human) relationship: part_of EHDAA2:0004454 ! diencephalon D1 neuromere (embryonic human) [Term] id: EHDAA2:0004458 name: diencephalon D1 chiasmatic plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0004429 ! future diencephalon D1 chiasmatic plate (embryonic human) relationship: part_of EHDAA2:0004454 ! diencephalon D1 neuromere (embryonic human) [Term] id: EHDAA2:0004459 name: diencephalon D2 roof plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000605 ! future diencephalon D2 roof plate (embryonic human) relationship: part_of EHDAA2:0004455 ! diencephalon D2 neuromere (embryonic human) [Term] id: EHDAA2:0004460 name: diencephalon D2 floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from EHDAA2:0000601 ! future diencephalon D2 floor plate (embryonic human) relationship: part_of EHDAA2:0004455 ! diencephalon D2 neuromere (embryonic human) [Term] id: EHDAA2:0004463 name: diencephalon D2 lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from EHDAA2:0000602 ! future diencephalon D2 lateral wall (embryonic human) relationship: part_of EHDAA2:0004455 ! diencephalon D2 neuromere (embryonic human) [Term] id: EHDAA2:0004464 name: diencephalon D1 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004456 ! diencephalon D1 lateral wall (embryonic human) relationship: part_of EHDAA2:0004456 ! diencephalon D1 lateral wall (embryonic human) [Term] id: EHDAA2:0004465 name: diencephalon D1 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004456 ! diencephalon D1 lateral wall (embryonic human) relationship: develops_from EHDAA2:0004464 ! diencephalon D1 ventricular layer (embryonic human) relationship: part_of EHDAA2:0004456 ! diencephalon D1 lateral wall (embryonic human) [Term] id: EHDAA2:0004466 name: diencephalon D2 mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004463 ! diencephalon D2 lateral wall (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of EHDAA2:0004463 ! diencephalon D2 lateral wall (embryonic human) [Term] id: EHDAA2:0004467 name: diencephalon D2 ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004463 ! diencephalon D2 lateral wall (embryonic human) relationship: part_of EHDAA2:0004463 ! diencephalon D2 lateral wall (embryonic human) [Term] id: EHDAA2:0004468 name: hypothalamic cell cord (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004656 ! differentiating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004463 ! diencephalon D2 lateral wall (embryonic human) relationship: part_of EHDAA2:0004463 ! diencephalon D2 lateral wall (embryonic human) [Term] id: EHDAA2:0004471 name: ventral thalamus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0010225 ! thalamic complex [Term] id: EHDAA2:0004472 name: synencephalon (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004463 ! diencephalon D2 lateral wall (embryonic human) relationship: part_of UBERON:0001894 ! diencephalon [Term] id: EHDAA2:0004473 name: midbrain sulcus limitans (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0006846 ! groove [Term] id: EHDAA2:0004476 name: tegmentum marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001173 ! midbrain marginal layer (embryonic human) relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: EHDAA2:0004477 name: tegmentum ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001178 ! midbrain ventricular layer (embryonic human) relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: EHDAA2:0004478 name: tegmentum mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: EHDAA2:0004479 name: tegmentum basal plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004375 ! midbrain basal plate (embryonic human) relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: EHDAA2:0004480 name: tectum ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001178 ! midbrain ventricular layer (embryonic human) relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: EHDAA2:0004481 name: tectum marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001173 ! midbrain marginal layer (embryonic human) relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: EHDAA2:0004482 name: tectum mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0009581 ! midbrain mantle layer relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: EHDAA2:0004483 name: tectum alar plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004374 ! midbrain alar plate (embryonic human) relationship: part_of EHDAA2:0004482 ! tectum mantle layer (embryonic human) [Term] id: EHDAA2:0004484 name: tegmentum oculomotor nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0001715 ! oculomotor nuclear complex relationship: part_of EHDAA2:0004478 ! tegmentum mantle layer (embryonic human) [Term] id: EHDAA2:0004485 name: tectum trigeminal sensory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004627 ! midbrain trigeminal sensory nucleus (embryonic human) relationship: part_of EHDAA2:0004482 ! tectum mantle layer (embryonic human) [Term] id: EHDAA2:0004486 name: tegmentum oculomotor III nerve (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001021 ! nerve relationship: develops_from UBERON:0001643 ! oculomotor nerve relationship: part_of EHDAA2:0004478 ! tegmentum mantle layer (embryonic human) [Term] id: EHDAA2:0004487 name: synencephalon mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004466 ! diencephalon D2 mantle layer (embryonic human) relationship: part_of EHDAA2:0004472 ! synencephalon (embryonic human) [Term] id: EHDAA2:0004489 name: synencephalon ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of EHDAA2:0004472 ! synencephalon (embryonic human) [Term] id: EHDAA2:0004490 name: subthalamus mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004466 ! diencephalon D2 mantle layer (embryonic human) relationship: part_of UBERON:0001900 ! subthalamus [Term] id: EHDAA2:0004491 name: subthalamus marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004490 ! subthalamus mantle layer (embryonic human) relationship: part_of UBERON:0001900 ! subthalamus [Term] id: EHDAA2:0004492 name: subthalamus ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of UBERON:0001900 ! subthalamus [Term] id: EHDAA2:0004493 name: ventral thalamus mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004466 ! diencephalon D2 mantle layer (embryonic human) relationship: part_of EHDAA2:0004471 ! ventral thalamus (embryonic human) [Term] id: EHDAA2:0004494 name: ventral thalamus marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004493 ! ventral thalamus mantle layer (embryonic human) relationship: part_of EHDAA2:0004471 ! ventral thalamus (embryonic human) [Term] id: EHDAA2:0004495 name: ventral thalamus ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004467 ! diencephalon D2 ventricular layer (embryonic human) relationship: part_of EHDAA2:0004471 ! ventral thalamus (embryonic human) [Term] id: EHDAA2:0004497 name: archipallium mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001986 ! telencephalon mantle layer (embryonic human) relationship: part_of UBERON:0002961 ! archicortex [Term] id: EHDAA2:0004498 name: archipallium ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001996 ! telencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0002961 ! archicortex [Term] id: EHDAA2:0004499 name: archipallium marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001988 ! telencephalon marginal layer (embryonic human) relationship: part_of UBERON:0002961 ! archicortex [Term] id: EHDAA2:0004500 name: axillary sac (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0001587 ! subclavian vein relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: EHDAA2:0004502 name: lumbar sac (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0005610 ! iliac vein relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: EHDAA2:0004503 name: body arteries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0000468 ! multi-cellular organism relationship: part_of UBERON:0001637 ! artery [Term] id: EHDAA2:0004506 name: haematoblasts (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004700 ! developing mesenchymal structure (embryonic human) relationship: develops_from EHDAA2:0000177 ! yolk sac blood islands (embryonic human) relationship: part_of EHDAA2:0000177 ! yolk sac blood islands (embryonic human) relationship: part_of UBERON:0003316 ! mesenchyme of yolk sac [Term] id: EHDAA2:0004510 name: angioblast clusters (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004700 ! developing mesenchymal structure (embryonic human) relationship: develops_from EHDAA2:0000177 ! yolk sac blood islands (embryonic human) relationship: part_of UBERON:0003316 ! mesenchyme of yolk sac [Term] id: EHDAA2:0004511 name: subepicardial vasculoplexus capillaries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from UBERON:0002348 ! epicardium relationship: part_of EHDAA2:0004144 ! heart-associated blood vessels (embryonic human) relationship: part_of UBERON:0007798 ! vascular system [Term] id: EHDAA2:0004513 name: fused midline dorsal aorta (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0005613 ! left dorsal aorta relationship: develops_from UBERON:0005622 ! right dorsal aorta relationship: part_of UBERON:0010191 ! aortic system [Term] id: EHDAA2:0004515 name: 4th arch artery right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0010256 ! 4th arch mesenchyme from neural crest relationship: part_of UBERON:0003115 ! pharyngeal arch 4 relationship: part_of UBERON:0004363 ! aortic arch [Term] id: EHDAA2:0004516 name: 6th arch artery right (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003117 ! pharyngeal arch 6 relationship: develops_from UBERON:0010257 ! 6th arch mesenchyme from neural crest relationship: part_of UBERON:0004363 ! aortic arch [Term] id: EHDAA2:0004517 name: stapedial artery definitive (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0001532 ! internal carotid artery relationship: part_of EHDAA2:0004521 ! head arteries (embryonic human) relationship: part_of UBERON:0001756 ! middle ear [Term] id: EHDAA2:0004521 name: head arteries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001637 ! artery [Term] id: EHDAA2:0004522 name: heart associated arteries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of EHDAA2:0004144 ! heart-associated blood vessels (embryonic human) relationship: part_of EHDAA2:0004503 ! body arteries (embryonic human) [Term] id: EHDAA2:0004523 name: heart associated veins (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of EHDAA2:0004144 ! heart-associated blood vessels (embryonic human) relationship: part_of EHDAA2:0004543 ! body veins (embryonic human) [Term] id: EHDAA2:0004524 name: limb arteries (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0002101 ! limb [Term] id: EHDAA2:0004525 name: liver capillary plexus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0004526 ! body venous capillary plexus (embryonic human) relationship: part_of UBERON:0006877 ! vasculature of liver [Term] id: EHDAA2:0004526 name: body venous capillary plexus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0004540 ! embryonic venous capillary plexus (embryonic human) relationship: develops_from UBERON:0004873 ! splanchnopleure relationship: part_of EHDAA2:0004540 ! embryonic venous capillary plexus (embryonic human) [Term] id: EHDAA2:0004527 name: limb veins (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: EHDAA2:0004529 name: marginal vein of lower limb (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004532 ! lower limb vascular plexus (embryonic human) relationship: part_of EHDAA2:0004527 ! limb veins (embryonic human) relationship: part_of UBERON:0002103 ! hindlimb [Term] id: EHDAA2:0004530 name: marginal vein of upper limb (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from EHDAA2:0004531 ! upper limb vascular plexus (embryonic human) relationship: part_of EHDAA2:0004527 ! limb veins (embryonic human) relationship: part_of UBERON:0002102 ! forelimb [Term] id: EHDAA2:0004531 name: upper limb vascular plexus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0004540 ! embryonic venous capillary plexus (embryonic human) relationship: part_of EHDAA2:0004527 ! limb veins (embryonic human) relationship: part_of EHDAA2:0004540 ! embryonic venous capillary plexus (embryonic human) relationship: part_of UBERON:0002102 ! forelimb [Term] id: EHDAA2:0004532 name: lower limb vascular plexus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from EHDAA2:0004540 ! embryonic venous capillary plexus (embryonic human) relationship: part_of EHDAA2:0004527 ! limb veins (embryonic human) relationship: part_of EHDAA2:0004540 ! embryonic venous capillary plexus (embryonic human) relationship: part_of UBERON:0002103 ! hindlimb [Term] id: EHDAA2:0004533 name: azygous vein (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0008268 ! right supracardinal vein relationship: part_of EHDAA2:0004543 ! body veins (embryonic human) [Term] id: EHDAA2:0004540 name: embryonic venous capillary plexus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: EHDAA2:0004541 name: head and neck venous capillary plexus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0005629 ! vascular plexus relationship: develops_from UBERON:0006904 ! mesenchyme derived from head mesoderm relationship: part_of EHDAA2:0004540 ! embryonic venous capillary plexus (embryonic human) relationship: part_of UBERON:0009141 ! craniocervical region vein [Term] id: EHDAA2:0004543 name: body veins (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: EHDAA2:0004545 name: right ventricle chordae tendinae (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007475 ! matrix-based tissue relationship: develops_from UBERON:0009712 ! endocardium of right ventricle relationship: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0002134 ! tricuspid valve relationship: part_of UBERON:0002165 ! endocardium [Term] id: EHDAA2:0004546 name: zygote (embryonic human) namespace: http://www.xspan.org/obo.owl# synonym: "fertilized human egg" EXACT [] is_a: EHDAA2:0003013 ! single-cell tissue (embryonic human) relationship: part_of UBERON:0004716 ! conceptus [Term] id: EHDAA2:0004547 name: third polar body (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of EHDAA2:0000003 ! human conceptus extraembryonic component (embryonic human) [Term] id: EHDAA2:0004549 name: oroonasal membrane respiratory epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000487 ! simple squamous epithelium relationship: develops_from EHDAA2:0004552 ! nasal fin respiratory epithelium (embryonic human) relationship: part_of UBERON:0005385 ! nasal cavity respiratory epithelium relationship: part_of UBERON:0009672 ! oronasal membrane [Term] id: EHDAA2:0004550 name: oroonasal membrane oral epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000487 ! simple squamous epithelium relationship: develops_from EHDAA2:0004551 ! nasal fin oral epithelium (embryonic human) relationship: part_of UBERON:0002424 ! oral epithelium relationship: part_of UBERON:0009672 ! oronasal membrane [Term] id: EHDAA2:0004551 name: nasal fin oral epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004137 ! oral epithelium from ectoderm (embryonic human) relationship: part_of EHDAA2:0004137 ! oral epithelium from ectoderm (embryonic human) relationship: part_of UBERON:0009671 ! nasal fin [Term] id: EHDAA2:0004552 name: nasal fin respiratory epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005385 ! nasal cavity respiratory epithelium relationship: part_of UBERON:0009671 ! nasal fin [Term] id: EHDAA2:0004553 name: laryngopharyngeal cavity (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0010064 ! open anatomical space relationship: develops_from UBERON:0006272 ! oronasal cavity relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: EHDAA2:0004555 name: nasopharyngeal cavity (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004617 ! open cavity (embryonic human) relationship: develops_from UBERON:0006272 ! oronasal cavity [Term] id: EHDAA2:0004559 name: gut mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of EHDAA2:0004565 ! gut tissues (embryonic human) [Term] id: EHDAA2:0004562 name: appendix associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0000207 ! caecum associated mesenchyme (embryonic human) relationship: part_of UBERON:0001154 ! appendix [Term] id: EHDAA2:0004563 name: early midgut region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0001045 ! midgut [Term] id: EHDAA2:0004564 name: midgut part of future large intestine (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004563 ! early midgut region (embryonic human) relationship: part_of UBERON:0001045 ! midgut [Term] id: EHDAA2:0004565 name: gut tissues (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001555 ! digestive tract [Term] id: EHDAA2:0004568 name: early foregut endoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0000925 ! endoderm relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: EHDAA2:0004571 name: laryngopharynx associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010046 ! entire pharyngeal arch associated mesenchyme relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: EHDAA2:0004573 name: foregut mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0005669 ! peritoneal cavity mesothelium relationship: part_of EHDAA2:0004559 ! gut mesothelium (embryonic human) relationship: part_of UBERON:0001041 ! foregut [Term] id: EHDAA2:0004576 name: midgut mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from UBERON:0005669 ! peritoneal cavity mesothelium relationship: part_of EHDAA2:0004559 ! gut mesothelium (embryonic human) relationship: part_of UBERON:0001045 ! midgut [Term] id: EHDAA2:0004577 name: midgut part of future large intestine epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003914 ! epithelial tube relationship: develops_from UBERON:0003352 ! epithelium of midgut relationship: part_of EHDAA2:0004564 ! midgut part of future large intestine (embryonic human) relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: EHDAA2:0004578 name: midgut part of future large intestine associated mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0009478 ! associated mesenchyme of midgut relationship: part_of EHDAA2:0004564 ! midgut part of future large intestine (embryonic human) [Term] id: EHDAA2:0004579 name: midgut part of future large intestine mesentery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007529 ! loose mesenchyme tissue relationship: develops_from EHDAA2:0004578 ! midgut part of future large intestine associated mesenchyme (embryonic human) relationship: part_of EHDAA2:0004564 ! midgut part of future large intestine (embryonic human) relationship: part_of UBERON:0003284 ! mesentery of midgut [Term] id: EHDAA2:0004580 name: coecum mesentery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001153 ! caecum relationship: develops_from EHDAA2:0004562 ! appendix associated mesenchyme (embryonic human) relationship: part_of UBERON:0003284 ! mesentery of midgut [Term] id: EHDAA2:0004581 name: future jejunum & ileum mesentery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007529 ! loose mesenchyme tissue relationship: develops_from EHDAA2:0001616 ! future jejunum & ileum associated mesenchyme (embryonic human) relationship: part_of EHDAA2:0001615 ! future jejunum & ileum (embryonic human) relationship: part_of UBERON:0003284 ! mesentery of midgut [Term] id: EHDAA2:0004582 name: early hindgut (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001046 ! hindgut [Term] id: EHDAA2:0004583 name: foregut dorsal mesentery (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003255 ! row (embryonic human) relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0002296 ! dorsal mesentery [Term] id: EHDAA2:0004584 name: hindgut mesothelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0001136 ! mesothelium relationship: develops_from EHDAA2:0001122 ! mesenchyme from splanchnopleure (embryonic human) relationship: part_of EHDAA2:0004559 ! gut mesothelium (embryonic human) relationship: part_of UBERON:0001046 ! hindgut [Term] id: EHDAA2:0004588 name: internal anal region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001353 ! anal region [Term] id: EHDAA2:0004589 name: external anal region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001353 ! anal region [Term] id: EHDAA2:0004590 name: anal region membranes (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001353 ! anal region [Term] id: EHDAA2:0004591 name: internal anal region mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0006258 ! lateral plate mesenchyme relationship: part_of EHDAA2:0004588 ! internal anal region (embryonic human) [Term] id: EHDAA2:0004592 name: external anal region surface ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of EHDAA2:0004589 ! external anal region (embryonic human) relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: EHDAA2:0004593 name: rest of external anal region surface ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) relationship: part_of EHDAA2:0004592 ! external anal region surface ectoderm (embryonic human) [Term] id: EHDAA2:0004594 name: peri-arterial mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010255 ! 3rd arch mesenchyme from neural crest relationship: develops_from UBERON:0010256 ! 4th arch mesenchyme from neural crest relationship: develops_from UBERON:0010257 ! 6th arch mesenchyme from neural crest relationship: part_of EHDAA2:0004522 ! heart associated arteries (embryonic human) [Term] id: EHDAA2:0004595 name: thyroid mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010254 ! 2nd arch mesenchyme from neural crest relationship: develops_from UBERON:0010255 ! 3rd arch mesenchyme from neural crest relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: EHDAA2:0004597 name: membranous interventricular septum mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from EHDAA2:0004186 ! aortico-pulmonary spiral septum mesenchyme (embryonic human) relationship: part_of UBERON:0004666 ! interventricular septum membranous part [Term] id: EHDAA2:0004599 name: maxillary process ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000039 ! 1st arch maxillary ectoderm (embryonic human) relationship: part_of UBERON:0005868 ! maxillary prominence [Term] id: EHDAA2:0004600 name: mandibular process ectoderm (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000032 ! 1st arch mandibular ectoderm (embryonic human) relationship: part_of UBERON:0005867 ! mandibular prominence [Term] id: EHDAA2:0004601 name: maxillary process mesenchyme from neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0010253 ! 1st arch maxillary mesenchyme from neural crest relationship: part_of UBERON:0009526 ! maxillary process mesenchyme [Term] id: EHDAA2:0004602 name: maxillary process mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0000043 ! 1st arch maxillary mesenchyme from head mesenchyme (embryonic human) relationship: part_of UBERON:0009526 ! maxillary process mesenchyme [Term] id: EHDAA2:0004603 name: mandibular process mesenchyme from neural crest (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from UBERON:0010252 ! 1st arch mandibular mesenchyme from neural crest relationship: part_of UBERON:0006905 ! mandibular process mesenchyme [Term] id: EHDAA2:0004604 name: mandibular process mesenchyme from head mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0003104 ! mesenchyme relationship: develops_from EHDAA2:0000036 ! 1st arch mandibular mesenchyme from head mesenchyme (embryonic human) relationship: part_of UBERON:0006905 ! mandibular process mesenchyme [Term] id: EHDAA2:0004607 name: upper jaw region (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000166 ! oral opening [Term] id: EHDAA2:0004608 name: primary palate bone (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002514 ! intramembranous bone relationship: develops_from UBERON:0005705 ! primary palate mesenchyme relationship: part_of UBERON:0002244 ! premaxilla [Term] id: EHDAA2:0004609 name: primary palate epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0005659 ! primary palate epithelium relationship: part_of UBERON:0002244 ! premaxilla [Term] id: EHDAA2:0004612 name: copula epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from UBERON:0007123 ! pharyngeal pouch 2 relationship: part_of UBERON:0010034 ! copula linguae [Term] id: EHDAA2:0004613 name: copula associared mesenchyme (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0010034 ! copula linguae [Term] id: EHDAA2:0004617 name: open cavity (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "An open anatomical space that is mainly bounded but has an opening to another cavity or to the outside." [AEO:0000215] is_a: UBERON:0010064 ! open anatomical space [Term] id: EHDAA2:0004619 name: enclosed anatomical space (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "An anatomical space with no opening to another space or to the exterior." [AEO:0000222] is_a: UBERON:0000464 ! anatomical space [Term] id: EHDAA2:0004620 name: lumen of epithelial sac (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "The anatomical space within a single epithelial sac." [AEO:000079] is_a: EHDAA2:0004619 ! enclosed anatomical space (embryonic human) [Term] id: EHDAA2:0004625 name: accessory XI ganglion (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from EHDAA2:0001567 ! pro-rhombomere d neural crest (embryonic human) relationship: part_of EHDAA2:0000226 ! CNS cranial ganglion (embryonic human) [Term] id: EHDAA2:0004626 name: trigeminal nucleus group (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000480 ! anatomical group [Term] id: EHDAA2:0004627 name: midbrain trigeminal sensory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of EHDAA2:0004626 ! trigeminal nucleus group (embryonic human) relationship: part_of UBERON:0009581 ! midbrain mantle layer [Term] id: EHDAA2:0004629 name: trigeminal medullary sensory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004634 ! trigeminal myelencephalon sensory nucleus (embryonic human) relationship: part_of EHDAA2:0001090 ! medulla oblongata alar plate (embryonic human) relationship: part_of EHDAA2:0004626 ! trigeminal nucleus group (embryonic human) [Term] id: EHDAA2:0004630 name: trigeminal pontine motor nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004631 ! early trigeminal pontine motor nucleus (embryonic human) relationship: part_of EHDAA2:0001155 ! pons basal plate (embryonic human) relationship: part_of EHDAA2:0004626 ! trigeminal nucleus group (embryonic human) [Term] id: EHDAA2:0004631 name: early trigeminal pontine motor nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0009579 ! myelencephalon basal plate relationship: part_of EHDAA2:0004626 ! trigeminal nucleus group (embryonic human) relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004632 name: early trigeminal pontine sensory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0000625 ! future metencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0004626 ! trigeminal nucleus group (embryonic human) [Term] id: EHDAA2:0004633 name: early trigeminal myelencephalon sensory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0000642 ! future myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0004626 ! trigeminal nucleus group (embryonic human) [Term] id: EHDAA2:0004634 name: trigeminal myelencephalon sensory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004633 ! early trigeminal myelencephalon sensory nucleus (embryonic human) relationship: part_of EHDAA2:0000924 ! myelencephalon alar plate (embryonic human) relationship: part_of EHDAA2:0004626 ! trigeminal nucleus group (embryonic human) [Term] id: EHDAA2:0004636 name: early hypoglossal nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0009579 ! myelencephalon basal plate relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004637 name: myelencephalon hypoglossal XII nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004636 ! early hypoglossal nucleus (embryonic human) relationship: part_of EHDAA2:0000929 ! myelencephalon basal plate (embryonic human) [Term] id: EHDAA2:0004640 name: early facial nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0010123 ! future facial nucleus relationship: part_of EHDAA2:0004412 ! rhombomere 06 basal plate (embryonic human) [Term] id: EHDAA2:0004642 name: early inferior salivatory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0010124 ! future inferior salivatory nucleus relationship: part_of EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) [Term] id: EHDAA2:0004645 name: early superior salivatory nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0010125 ! future superior salivatory nucleus relationship: part_of EHDAA2:0000629 ! future metencephalon basal plate (embryonic human) [Term] id: EHDAA2:0004648 name: superior jugular ganglion (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000045 ! ganglion relationship: develops_from UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: part_of EHDAA2:0000226 ! CNS cranial ganglion (embryonic human) [Term] id: EHDAA2:0004651 name: early dorsal motor nucleus of vagus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from UBERON:0009579 ! myelencephalon basal plate relationship: develops_from UBERON:0010127 ! future dorsal motor nucleus of vagus relationship: part_of UBERON:0009579 ! myelencephalon basal plate [Term] id: EHDAA2:0004652 name: myelencephalon dorsal motor nucleus of vagus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004651 ! early dorsal motor nucleus of vagus (embryonic human) relationship: part_of EHDAA2:0000929 ! myelencephalon basal plate (embryonic human) [Term] id: EHDAA2:0004653 name: developing epithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "An epithelium within an embryo or larva that is undergoing a major developmental change." [AEO:JB] xref: AEO:0001007 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0004655 name: proliferating neuroepithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "An epithelium that is undergoing proliferation to provide large numbers of neuronal cells." [AEO:JB] xref: AEO:0001009 is_a: UBERON:0004022 ! embryonic neuroepithelium [Term] id: EHDAA2:0004656 name: differentiating neuroepithelium (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells." [AEO:JB] xref: AEO:0001010 is_a: UBERON:0004022 ! embryonic neuroepithelium [Term] id: EHDAA2:0004657 name: neuronal white matter (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "Neuronal tissue composed predominantly of axons." [AEO:JB] xref: AEO:0001011 is_a: UBERON:0003714 ! neural tissue [Term] id: EHDAA2:0004659 name: neuronal column (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "An extended columnar domain of predominantly neuronal tissue in the central nervous system." [AEO:JB] xref: AEO:0001013 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: EHDAA2:0004660 name: differentiating neuronal condensation (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "A compact group of cells differentiating to become a ganglion or a neuronal nucleus." [AEO:JB] xref: AEO:0001014 is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0004663 name: paleopallium (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: EHDAA2:0004664 name: neopallium mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001986 ! telencephalon mantle layer (embryonic human) relationship: part_of UBERON:0001950 ! neocortex [Term] id: EHDAA2:0004665 name: neopallium ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0001996 ! telencephalon ventricular layer (embryonic human) relationship: part_of UBERON:0001950 ! neocortex [Term] id: EHDAA2:0004666 name: neopallium marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001988 ! telencephalon marginal layer (embryonic human) relationship: part_of UBERON:0001950 ! neocortex [Term] id: EHDAA2:0004667 name: epithalamus marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0000449 ! epithalamus mantle layer (embryonic human) relationship: part_of UBERON:0001899 ! epithalamus [Term] id: EHDAA2:0004668 name: neural tube floor plate (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0003068 ! columnar epithelium (embryonic human) relationship: develops_from UBERON:0005062 ! neural fold relationship: part_of EHDAA2:0001254 ! neural tube (embryonic human) [Term] id: EHDAA2:0004669 name: neural tube lateral wall (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0004022 ! embryonic neuroepithelium relationship: develops_from UBERON:0005062 ! neural fold relationship: part_of EHDAA2:0001254 ! neural tube (embryonic human) [Term] id: EHDAA2:0004700 name: developing mesenchymal structure (embryonic human) namespace: http://www.xspan.org/obo.owl# def: "An early mesenchymal structure that will undergo a substantial change in its differentiated state. [AEO:JB]." [AEO:0001015] is_a: UBERON:0005423 ! developing anatomical structure [Term] id: EHDAA2:0004702 name: olfactory bulb mantle layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004656 ! differentiating neuroepithelium (embryonic human) relationship: develops_from EHDAA2:0004446 ! telencephalon basal area mantle layer (embryonic human) relationship: part_of EHDAA2:0004705 ! olfactory bulb (embryonic human) [Term] id: EHDAA2:0004703 name: olfactory bulb marginal layer (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004447 ! telencephalon basal area marginal layer (embryonic human) relationship: part_of EHDAA2:0004705 ! olfactory bulb (embryonic human) [Term] id: EHDAA2:0004704 name: olfactory bulb ventricular layer (embryonic human) namespace: http://www.xspan.org/obo.owl# alt_id: EHDAA2:0001294 is_a: EHDAA2:0004655 ! proliferating neuroepithelium (embryonic human) is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from EHDAA2:0004448 ! telencephalon basal area ventricular layer (embryonic human) relationship: part_of EHDAA2:0004705 ! olfactory bulb (embryonic human) [Term] id: EHDAA2:0004705 name: olfactory bulb (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of EHDAA2:0004445 ! telencephalon basal area (embryonic human) [Term] id: EHDAA2:0004706 name: red nucleus (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004478 ! tegmentum mantle layer (embryonic human) relationship: part_of EHDAA2:0004478 ! tegmentum mantle layer (embryonic human) [Term] id: EHDAA2:0004708 name: nucleus of the diagonal band (embryonic human) namespace: http://www.xspan.org/obo.owl# is_a: UBERON:0002020 ! gray matter of neuraxis relationship: develops_from EHDAA2:0004446 ! telencephalon basal area mantle layer (embryonic human) relationship: part_of EHDAA2:0004446 ! telencephalon basal area mantle layer (embryonic human) [Term] id: EHDAA2:0001156 name: pons marginal layer (embryonic human) namespace: human_developmental_anatomy_ontology is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0001643 ! rhombomere 01 marginal layer (embryonic human) relationship: develops_from EHDAA2:0001653 ! rhombomere 02 marginal layer (embryonic human) relationship: develops_from EHDAA2:0001663 ! rhombomere 03 marginal layer (embryonic human) relationship: part_of EHDAA2:0001159 ! pons lateral wall (embryonic human) [Term] id: EHDAA2:0001569 name: pro-rhombomere d roof plate (embryonic human) namespace: human_developmental_anatomy_ontology is_a: UBERON:0000490 ! unilaminar epithelium relationship: develops_from EHDAA2:0000592 ! brain neural ectoderm (embryonic human) relationship: develops_from EHDAA2:0001550 ! pro-rhombomere a roof plate (embryonic human) relationship: develops_from EHDAA2:0001556 ! pro-rhombomere b roof plate (embryonic human) relationship: part_of EHDAA2:0001563 ! pro-rhombomere d (embryonic human) relationship: part_of EHDAA2:0004323 ! rhombencephalon roof plate (embryonic human) [Term] id: EHDAA2:0004084 name: oropharynx associated mesenchyme (embryonic human) namespace: human_developmental_anatomy_ontology is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: develops_from UBERON:0010046 ! entire pharyngeal arch associated mesenchyme relationship: part_of UBERON:0001729 ! oropharynx [Term] id: EHDAA2:0004488 name: synencephalon marginal layer (embryonic human) namespace: human_developmental_anatomy_ontology is_a: EHDAA2:0004657 ! neuronal white matter (embryonic human) relationship: develops_from EHDAA2:0004487 ! synencephalon mantle layer (embryonic human) relationship: part_of EHDAA2:0004472 ! synencephalon (embryonic human) [Term] id: GO:0003674 name: molecular_function namespace: molecular_function alt_id: GO:0005554 def: "Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions." [GOC:go_curators] comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. Note that when this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "molecular function" EXACT [] synonym: "molecular function unknown" NARROW [] disjoint_from: GO:0005575 ! cellular_component disjoint_from: GO:0008150 ! biological_process property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0004871 name: signal transducer activity namespace: molecular_function alt_id: GO:0005062 alt_id: GO:0009369 alt_id: GO:0009370 def: "Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response." [GOC:go_curators] comment: Ligands do NOT have the molecular function 'signal transducer activity'. subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity" NARROW [] synonym: "quorum sensing response regulator activity" NARROW [] synonym: "quorum sensing signal generator activity" NARROW [] is_a: GO:0060089 ! molecular transducer activity relationship: part_of GO:0007165 ! signal transduction property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0004872 name: receptor activity namespace: molecular_function alt_id: GO:0019041 def: "Combining with an extracellular or intracellular messenger to initiate a change in cell activity." [GOC:ceb, ISBN:0198506732] subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "receptor guanylate cyclase activity" NARROW [] synonym: "viral antireceptor activity" NARROW [] is_a: GO:0003674 ! molecular_function property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0004888 name: transmembrane signaling receptor activity namespace: molecular_function alt_id: GO:0004926 def: "Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity." [GOC:go_curators, Wikipedia:Transmembrane_receptor] subset: gosubset_prok ! Prokaryotic GO subset synonym: "non G protein coupled 7TM receptor activity" NARROW [] synonym: "non-G-protein coupled 7TM receptor activity" NARROW [] synonym: "non-G-protein-coupled 7TM receptor activity" NARROW [] synonym: "transmembrane receptor activity" BROAD [GOC:bf, GOC:signaling] is_a: GO:0038023 ! signaling receptor activity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0004930 name: G-protein coupled receptor activity namespace: molecular_function alt_id: GO:0001622 alt_id: GO:0001623 alt_id: GO:0001624 alt_id: GO:0001625 alt_id: GO:0016526 def: "Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:bf, Wikipedia:GPCR, http://www.iuphar-db.org] subset: gosubset_prok ! Prokaryotic GO subset synonym: "EBV-induced receptor" NARROW [] synonym: "Epstein-Barr Virus-induced receptor activity" NARROW [] synonym: "G protein coupled receptor activity" EXACT [] synonym: "G protein linked receptor activity" EXACT [] synonym: "G-protein coupled receptor activity, unknown ligand" NARROW [] synonym: "G-protein linked receptor activity" EXACT [] synonym: "G-protein-coupled receptor activity" EXACT [] synonym: "GPCR activity" EXACT [] synonym: "Mas proto-oncogene receptor activity" NARROW [] synonym: "RDC1 receptor activity" NARROW [] synonym: "SREB receptor" NARROW [] synonym: "ligand-dependent GPCR activity" EXACT [] synonym: "orphan G protein coupled receptor activity" NARROW [] synonym: "orphan G-protein coupled receptor activity" NARROW [] synonym: "orphan GPCR activity" NARROW [] synonym: "receptor activity, G-protein coupled" EXACT [GOC:bf] synonym: "super conserved receptor expressed in brain receptor activity" NARROW [] xref: Reactome:REACT_100062 xref: Reactome:REACT_100632 xref: Reactome:REACT_101654 xref: Reactome:REACT_108337 xref: Reactome:REACT_108705 xref: Reactome:REACT_109480 xref: Reactome:REACT_109715 xref: Reactome:REACT_110075 xref: Reactome:REACT_1430 xref: Reactome:REACT_15298 xref: Reactome:REACT_28243 xref: Reactome:REACT_29193 xref: Reactome:REACT_29686 xref: Reactome:REACT_30471 xref: Reactome:REACT_32708 xref: Reactome:REACT_32983 xref: Reactome:REACT_34075 xref: Reactome:REACT_637 xref: Reactome:REACT_77079 xref: Reactome:REACT_78692 xref: Reactome:REACT_79526 xref: Reactome:REACT_85249 xref: Reactome:REACT_85989 xref: Reactome:REACT_86240 xref: Reactome:REACT_92494 xref: Reactome:REACT_95526 xref: Reactome:REACT_97825 xref: Reactome:REACT_98882 xref: Wikipedia:GPCR is_a: GO:0004888 ! transmembrane signaling receptor activity relationship: part_of GO:0007186 ! G-protein coupled receptor signaling pathway property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005044 name: scavenger receptor activity namespace: molecular_function def: "Combining with any modified low-density lipoprotein (LDL) or other polyanionic ligand and delivering the ligand into the cell via endocytosis. Ligands include acetylated and oxidized LDL, Gram-positive and Gram-negative bacteria, apoptotic cells, beta-amyloid fibrils, and advanced glycation end products (AGEs)." [GOC:bf, PMID:11790542, PMID:12379907, PMID:12621157, PMID:20981357] comment: Note that many gene products that are called scavenger receptors have a broad range of potential ligands and also can be annotated to 'pattern recognition receptor activity ; GO:0008329' or its child terms, or to 'lipoprotein receptor activity ; GO:0030228' or its child terms. For receptors that transduce a signal rather than endocytose their ligand, consider instead the terms 'signaling receptor activity ; GO:0038023' and its children. subset: gosubset_prok ! Prokaryotic GO subset synonym: "macrophage receptor activity" NARROW [] is_a: GO:0038024 ! cargo receptor activity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005102 name: receptor binding namespace: molecular_function def: "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." [GOC:bf, GOC:ceb, ISBN:0198506732] subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "receptor ligand" NARROW [] synonym: "receptor-associated protein activity" RELATED [] xref: Wikipedia:Ligand_(biochemistry) is_a: GO:0005515 ! protein binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005215 name: transporter activity namespace: molecular_function alt_id: GO:0005478 def: "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." [GOC:ai, GOC:dgf] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_metagenomics ! Metagenomics GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "small-molecule carrier or transporter" RELATED [] xref: Reactome:REACT_6315 is_a: GO:0003674 ! molecular_function relationship: part_of GO:0006810 ! transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005488 name: binding namespace: molecular_function def: "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732] comment: For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "ligand" NARROW [] xref: Wikipedia:Binding_(molecular) is_a: GO:0003674 ! molecular_function property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0005515 name: protein binding namespace: molecular_function alt_id: GO:0045308 def: "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." [GOC:go_curators] subset: goslim_aspergillus ! Aspergillus GO slim subset: goslim_candida ! Candida GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: gosubset_prok ! Prokaryotic GO subset synonym: "alpha-2 macroglobulin receptor-associated protein activity" RELATED [] synonym: "protein amino acid binding" EXACT [] synonym: "protein degradation tagging activity" RELATED [] synonym: "protein folding chaperone" NARROW [GOC:dph, GOC:mah, GOC:tb] synonym: "protein tagging activity" RELATED [] xref: Reactome:REACT_100287 xref: Reactome:REACT_101129 xref: Reactome:REACT_102084 xref: Reactome:REACT_102457 xref: Reactome:REACT_103972 xref: Reactome:REACT_104029 xref: Reactome:REACT_104599 xref: Reactome:REACT_105776 xref: Reactome:REACT_105895 xref: Reactome:REACT_106168 xref: Reactome:REACT_106189 xref: Reactome:REACT_107402 xref: Reactome:REACT_108283 xref: Reactome:REACT_109392 xref: Reactome:REACT_110419 xref: Reactome:REACT_110570 xref: Reactome:REACT_15321 xref: Reactome:REACT_15325 xref: Reactome:REACT_15355 xref: Reactome:REACT_15417 xref: Reactome:REACT_15419 xref: Reactome:REACT_15506 xref: Reactome:REACT_15541 xref: Reactome:REACT_20509 xref: Reactome:REACT_20539 xref: Reactome:REACT_28794 xref: Reactome:REACT_30571 xref: Reactome:REACT_30672 xref: Reactome:REACT_31305 xref: Reactome:REACT_31537 xref: Reactome:REACT_31641 xref: Reactome:REACT_31648 xref: Reactome:REACT_32973 xref: Reactome:REACT_33135 xref: Reactome:REACT_34719 xref: Reactome:REACT_6923 xref: Reactome:REACT_6945 xref: Reactome:REACT_78382 xref: Reactome:REACT_78466 xref: Reactome:REACT_79634 xref: Reactome:REACT_80470 xref: Reactome:REACT_80778 xref: Reactome:REACT_83147 xref: Reactome:REACT_83165 xref: Reactome:REACT_83532 xref: Reactome:REACT_85250 xref: Reactome:REACT_85858 xref: Reactome:REACT_85975 xref: Reactome:REACT_87187 xref: Reactome:REACT_87374 xref: Reactome:REACT_87652 xref: Reactome:REACT_88068 xref: Reactome:REACT_88138 xref: Reactome:REACT_88223 xref: Reactome:REACT_89261 xref: Reactome:REACT_90027 xref: Reactome:REACT_90105 xref: Reactome:REACT_90666 xref: Reactome:REACT_91560 xref: Reactome:REACT_92029 xref: Reactome:REACT_93175 xref: Reactome:REACT_93938 xref: Reactome:REACT_94522 xref: Reactome:REACT_94808 xref: Reactome:REACT_95241 xref: Reactome:REACT_95561 xref: Reactome:REACT_95647 xref: Reactome:REACT_96236 xref: Reactome:REACT_96264 xref: Reactome:REACT_98028 xref: Reactome:REACT_98807 is_a: GO:0005488 ! binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008289 name: lipid binding namespace: molecular_function def: "Interacting selectively and non-covalently with a lipid." [GOC:ai] subset: goslim_candida ! Candida GO slim subset: goslim_generic ! Generic GO slim subset: goslim_pir ! PIR GO slim subset: goslim_plant ! Plant GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0005488 ! binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008509 name: anion transmembrane transporter activity namespace: molecular_function def: "Catalysis of the transfer of a negatively charged ion from one side of a membrane to the other." [GOC:dgf, GOC:mtg_transport, ISBN:0815340729] subset: gosubset_prok ! Prokaryotic GO subset synonym: "anion transporter activity" EXACT [] xref: Reactome:REACT_100348 xref: Reactome:REACT_102329 xref: Reactome:REACT_106026 xref: Reactome:REACT_6188 xref: Reactome:REACT_79542 xref: Reactome:REACT_86643 xref: Reactome:REACT_87003 xref: Reactome:REACT_88207 xref: Reactome:REACT_90836 xref: Reactome:REACT_93989 xref: Reactome:REACT_96294 xref: Reactome:REACT_99908 is_a: GO:0015075 ! ion transmembrane transporter activity relationship: part_of GO:0006820 ! anion transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0008527 name: taste receptor activity namespace: molecular_function def: "Combining with soluble compounds to initiate a change in cell activity. These receptors are responsible for the sense of taste." [GOC:dph] synonym: "gustatory receptor" EXACT [] is_a: GO:0004930 ! G-protein coupled receptor activity relationship: part_of GO:0050912 ! detection of chemical stimulus involved in sensory perception of taste property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015075 name: ion transmembrane transporter activity namespace: molecular_function def: "Catalysis of the transfer of an ion from one side of a membrane to the other." [GOC:dgf, GOC:mtg_transport, ISBN:0815340729] subset: gosubset_prok ! Prokaryotic GO subset synonym: "ion transporter activity" EXACT [] is_a: GO:0022891 ! substrate-specific transmembrane transporter activity relationship: part_of GO:0034220 ! ion transmembrane transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015103 name: inorganic anion transmembrane transporter activity namespace: molecular_function def: "Catalysis of the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage." [GOC:ai] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0008509 ! anion transmembrane transporter activity relationship: part_of GO:0015698 ! inorganic anion transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0015106 name: bicarbonate transmembrane transporter activity namespace: molecular_function def: "Catalysis of the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-." [GOC:ai] is_a: GO:0015103 ! inorganic anion transmembrane transporter activity relationship: part_of GO:0015701 ! bicarbonate transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022857 name: transmembrane transporter activity namespace: molecular_function alt_id: GO:0005386 alt_id: GO:0015646 def: "Enables the transfer of a substance from one side of a membrane to the other." [GOC:mtg_transport, ISBN:0815340729] subset: goslim_generic ! Generic GO slim subset: goslim_yeast ! Yeast GO slim subset: gosubset_prok ! Prokaryotic GO subset xref: Reactome:REACT_100033 xref: Reactome:REACT_106735 xref: Reactome:REACT_111088 xref: Reactome:REACT_111933 xref: Reactome:REACT_113047 xref: Reactome:REACT_113116 xref: Reactome:REACT_113829 xref: Reactome:REACT_114161 xref: Reactome:REACT_19288 xref: Reactome:REACT_77235 xref: Reactome:REACT_81225 xref: Reactome:REACT_88503 xref: Reactome:REACT_91849 xref: Reactome:REACT_94185 is_a: GO:0005215 ! transporter activity relationship: part_of GO:0055085 ! transmembrane transport property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022891 name: substrate-specific transmembrane transporter activity namespace: molecular_function def: "Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other." [GOC:jid, GOC:mtg_transport, ISBN:0815340729] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0022857 ! transmembrane transporter activity is_a: GO:0022892 ! substrate-specific transporter activity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0022892 name: substrate-specific transporter activity namespace: molecular_function def: "Enables the directed movement of a specific substance or group of related substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." [GOC:mtg_transport] subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0005215 ! transporter activity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0023029 name: MHC class Ib protein binding namespace: molecular_function def: "Interacting selectively with major histocompatibility complex class Ib molecules." [GOC:mtg_signal] is_a: GO:0042287 ! MHC protein binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0032394 name: MHC class Ib receptor activity namespace: molecular_function def: "Combining with an MHC class Ib protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families." [GOC:add, GOC:signaling, ISBN:0781735149] comment: Note that this term is intended for annotation of gene products that act as receptors for MHC class Ib protein complexes, not for components of the MHC class Ib protein complexes themselves. synonym: "T cell receptor activity" RELATED [] synonym: "alpha-beta T cell receptor activity" RELATED [] synonym: "gamma-delta T cell receptor activity" RELATED [] is_a: GO:0004888 ! transmembrane signaling receptor activity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0038023 name: signaling receptor activity namespace: molecular_function def: "Receiving a signal and transmitting the signal in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response." [GOC:bf, GOC:signaling] comment: Note that this term and its child terms are intended for receptors that are directly coupled to a signal transduction pathway. This term should therefore not be used to annotate decoy receptors and other proteins that bind a signal but do not pass the signal on. This term can be used to annotate dependence receptors that transduce a signal when a ligand is withdrawn (in this case, signal withdrawal is considered to be the initiating signal), or receptors that signal at a basal level in the absence of a bound agonist. For receptors that mediate transport of a substance into the cell by receptor-mediated endocytosis, consider instead the term 'cargo receptor activity ; GO:0038024' and its children. synonym: "receptor activity involved in signal transduction" EXACT [GOC:bf] is_a: GO:0004871 ! signal transducer activity is_a: GO:0004872 ! receptor activity property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0038024 name: cargo receptor activity namespace: molecular_function def: "Combining selectively with an extracellular macromolecule and delivering the macromolecule into the cell via endocytosis." [GOC:bf, GOC:signaling, PMID:15239958] comment: Note that this term and its child terms are intended for receptors that bind to and internalize molecules by receptor-mediated endocytosis. For receptors that are coupled to a signal transduction pathway, consider instead the term 'signaling receptor activity ; GO:0038023' and its children. synonym: "endocytic receptor activity" RELATED [GOC:signaling, ISBN:0123645387, PMID:12671190] synonym: "receptor activity involved in ligand uptake" EXACT [PMID:12671190] synonym: "receptor activity involved in receptor-mediated endocytosis" EXACT [GOC:bf] synonym: "transport receptor activity" RELATED [GOC:signaling] is_a: GO:0004872 ! receptor activity relationship: part_of GO:0006898 ! receptor-mediated endocytosis property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0042287 name: MHC protein binding namespace: molecular_function def: "Interacting selectively and non-covalently with major histocompatibility complex molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation." [GOC:jl] comment: Note that this term does not include binding to the antigen peptide bound to the MHC protein, for this also annotate to 'peptide antigen binding ; GO:0042605' or one of its children. synonym: "major histocompatibility complex binding" EXACT [] synonym: "major histocompatibility complex ligand" NARROW [] is_a: GO:0005102 ! receptor binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0043208 name: glycosphingolipid binding namespace: molecular_function def: "Interacting selectively and non-covalently with glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide." [GOC:jl] is_a: GO:0046625 ! sphingolipid binding is_a: GO:0051861 ! glycolipid binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0045233 name: natural killer cell receptor activity namespace: molecular_function def: "OBSOLETE. A receptor found on the surface of natural killer cells which binds Class I MHC antigens and is required for activation of NK activity. It belongs to the Ly49i family." [GOC:ebc] is_obsolete: true consider: GO:0002769 consider: GO:0004888 ! transmembrane signaling receptor activity consider: GO:0030101 ! natural killer cell activation comment: This term was made obsolete because the receptor is defined based on its cellular expression pattern, and the definition is inaccurate: receptors on natural killer cells can either activate or inhibit natural killer (NK) cell-mediated cytotoxicity. synonym: "Ly49i" NARROW [] synonym: "NK cell receptor activity" EXACT [] property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0046625 name: sphingolipid binding namespace: molecular_function def: "Interacting selectively and non-covalently with sphingolipids, a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid)." [ISBN:0198506732] is_a: GO:0008289 ! lipid binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0051861 name: glycolipid binding namespace: molecular_function def: "Interacting selectively and non-covalently with a glycolipid, any compound containing one or more monosaccharide residues bound by a glycosidic linkage to a hydrophobic group such as an acylglycerol, a sphingoid, a ceramide (N-acylsphingoid) or a prenyl phosphate." [http://www.chem.qmul.ac.uk/iupac/misc/glylp.html#2.1] is_a: GO:0008289 ! lipid binding property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0060089 name: molecular transducer activity namespace: molecular_function def: "The molecular function that accepts an input of one form and creates an output of a different form." [GOC:mtg_MIT_16mar07] subset: goslim_pir ! PIR GO slim subset: gosubset_prok ! Prokaryotic GO subset is_a: GO:0003674 ! molecular_function property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: PATO:0000001 name: quality namespace: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities." [PATOC:GVG] synonym: "trait" EXACT [] property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000050 name: life span namespace: quality def: "A time quality inhering in a bearer by virtue of the bearer's expected maximum age." [PATOC:GVG] subset: attribute_slim ! Attribute slim is_a: PATO:0000165 ! time property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000051 name: morphology namespace: quality def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG] subset: attribute_slim ! Attribute slim is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000052 name: shape namespace: quality alt_id: PATO:0001647 def: "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." [PATOC:GVG] comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. subset: attribute_slim ! Attribute slim synonym: "relational shape quality" EXACT [] is_a: PATO:0000051 ! morphology property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000068 name: qualitative namespace: quality comment: TODO: define this or obsolete it and move children somewhere else. is_a: PATO:0000001 ! quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000069 name: deviation(from_normal) namespace: quality def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [PATOC:GVG] subset: attribute_slim ! Attribute slim is_a: PATO:0000068 ! qualitative property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000117 name: size namespace: quality def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [WordNet:WordNet] subset: attribute_slim ! Attribute slim subset: scalar_slim ! Scalar slim is_a: PATO:0000051 ! morphology property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000141 name: structure namespace: quality alt_id: PATO:0001452 def: "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [PATOC:GVG] subset: attribute_slim ! Attribute slim synonym: "relational structural quality" EXACT [] is_a: PATO:0000051 ! morphology property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000165 name: time namespace: quality def: "A quality in which events occur in sequence." [PATOC:GVG] subset: attribute_slim ! Attribute slim subset: scalar_slim ! Scalar slim is_a: PATO:0001018 ! physical quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000261 name: maturity namespace: quality def: "A quality of a single physical entity which is held by a bearer when the latter exhibits complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: attribute_slim ! Attribute slim is_a: PATO:0001995 ! organismal quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000406 name: curved namespace: quality def: "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend." [WordNet:WordNet] subset: cell_quality ! cell_quality subset: value_slim ! Value slim synonym: "bowing" NARROW [] synonym: "curled" RELATED [] is_a: PATO:0001591 ! curvature property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000411 name: circular namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center." [thefreedictionary.com:thefreedictionary.com] subset: cell_quality ! cell_quality subset: value_slim ! Value slim synonym: "round" EXACT [] synonym: "rounded" EXACT [] is_a: PATO:0000947 ! elliptic property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000461 name: normal namespace: quality def: "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average." [PATOC:GVG] subset: abnormal_slim ! Abnormal/normal slim subset: value_slim ! Value slim synonym: "average" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000586 name: increased size namespace: quality alt_id: PATO:0001202 def: "A size quality which is relatively high." [PATOC:GVG] subset: value_slim ! Value slim synonym: "big" RELATED [] synonym: "enlarged" RELATED [] synonym: "expanded" RELATED [] synonym: "great" RELATED [] synonym: "large" RELATED [] is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000587 name: decreased size namespace: quality def: "A size quality which is relatively low." [PATOC:GVG] subset: value_slim ! Value slim synonym: "hypoplasia" NARROW [] synonym: "small" RELATED [] synonym: "tiny" RELATED [] synonym: "underdeveloped" NARROW [] is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000947 name: elliptic namespace: quality def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section." [PATOC:GVG] subset: cell_quality ! cell_quality subset: value_slim ! Value slim synonym: "ellipse-shaped" EXACT [] synonym: "ellipsoid" EXACT [] synonym: "elliptical" EXACT [] synonym: "oval" RELATED [] synonym: "ovoid" RELATED [] is_a: PATO:0002318 ! superelliptic property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001018 name: physical quality namespace: quality alt_id: PATO:0002079 def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] subset: attribute_slim ! Attribute slim synonym: "relational physical quality" EXACT [] xref: Wikipedia:Physical_property is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001241 name: physical object quality namespace: quality alt_id: PATO:0001237 alt_id: PATO:0001238 def: "A quality which inheres in a continuant." [PATOC:GVG] comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. synonym: "monadic quality of a continuant" EXACT [] synonym: "monadic quality of an object" NARROW [] synonym: "monadic quality of continuant" NARROW [] synonym: "multiply inhering quality of a physical entity " EXACT [] synonym: "quality of a continuant" EXACT [] synonym: "quality of a single physical entity" EXACT [] synonym: "quality of an object" EXACT [] synonym: "quality of continuant" EXACT [] xref: snap:Quality is_a: PATO:0000001 ! quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001374 name: ploidy namespace: quality def: "A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism." [Wikipedia:http://en.wikipedia.org/wiki/Ploidy] subset: attribute_slim ! Attribute slim is_a: PATO:0001396 ! cellular quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001375 name: haploid namespace: quality def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes." [Wikipedia:http://en.wikipedia.org/wiki/Haploid] subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0001393 ! euploid property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001393 name: euploid namespace: quality def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes." [Wikipedia:http://en.wikipedia.org/wiki/Euploid] subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0001374 ! ploidy property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001394 name: diploid namespace: quality def: "A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father." [Wikipedia:http://en.wikipedia.org/wiki/Diploid] comment: The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy. subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0001393 ! euploid property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001396 name: cellular quality namespace: quality def: "A monadic quality of continuant that exists at the cellular level of organisation." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001397 name: cellular potency namespace: quality def: "A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types." [PATOC:GVG] subset: attribute_slim ! Attribute slim subset: disposition_slim ! Disposition slim is_a: PATO:0001396 ! cellular quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001400 name: unipotent namespace: quality def: "A cellular potency that is the capacity to produce only one differentiated cell type." [Wikipedia:http://en.wikipedia.org/wiki/Unipotent] comment: Unipotent cells have the quality of self-renewal which distinguishes them from non-stem cells. subset: cell_quality ! cell_quality subset: disposition_slim ! Disposition slim subset: value_slim ! Value slim is_a: PATO:0001397 ! cellular potency property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001401 name: oligopotent namespace: quality def: "A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity." [PATOC:MAH] comment: Less potent than multipotent, often thought of as precursor or progenitor cell status. subset: cell_quality ! cell_quality subset: disposition_slim ! Disposition slim subset: value_slim ! Value slim is_a: PATO:0001397 ! cellular potency property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001402 name: multipotent namespace: quality def: "A cellular potency that is the capacity to form multiple differentiated cell types." [Wikipedia:http://en.wikipedia.org/wiki/Multipotent] subset: cell_quality ! cell_quality subset: disposition_slim ! Disposition slim subset: value_slim ! Value slim is_a: PATO:0001397 ! cellular potency property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001404 name: nucleate quality namespace: quality def: "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei." [PATOC:GVG] subset: attribute_slim ! Attribute slim is_a: PATO:0001396 ! cellular quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001405 name: anucleate namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus." [Biology-online:Biology-online] subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0001404 ! nucleate quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001406 name: binucleate namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei." [Biology-online:Biology-online] subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0001908 ! multinucleate property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001407 name: mononucleate namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus." [Biology-online:Biology-online] subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0001404 ! nucleate quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001501 name: immature namespace: quality def: "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: value_slim ! Value slim synonym: "underdeveloped" RELATED [] is_a: PATO:0000261 ! maturity property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001591 name: curvature namespace: quality def: "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending." [WordNet:WordNet] subset: attribute_slim ! Attribute slim is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001604 name: decreased life span namespace: quality def: "A life span which is relatively low." [PATO:GVG] synonym: "low life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002303 ! decreased object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001789 name: domed namespace: quality def: "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome." [PATOC:GVG] subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0000406 ! curved property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001857 name: concave namespace: quality def: "A shape quality in a bearer by virtue of the bearer's curving inward." [WordNet:WordNet] subset: cell_quality ! cell_quality subset: value_slim ! Value slim is_a: PATO:0002005 ! concavity property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001873 name: cylindrical namespace: quality alt_id: PATO:0001203 def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section." [PATOC:MAH] subset: cell_quality ! cell_quality subset: value_slim ! Value slim synonym: "rod-like" EXACT [] synonym: "rod-shaped" EXACT [] synonym: "tubulate" EXACT [] is_a: PATO:0002007 ! convex 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001874 name: discoid namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter." [PATOC:cjm] subset: cell_quality ! cell_quality subset: value_slim ! Value slim synonym: "disc-shaped" EXACT [] synonym: "disk-shaped" EXACT [] is_a: PATO:0001873 ! cylindrical property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001908 name: multinucleate namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus." [PATOC:GVG] subset: value_slim ! Value slim is_a: PATO:0001404 ! nucleate quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001987 name: saccular namespace: quality def: "A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance." [PATOC:MAH] subset: value_slim ! Value slim synonym: "sacular" EXACT [] is_a: PATO:0002014 ! structure, cavities property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001995 name: organismal quality namespace: quality def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002005 name: concavity namespace: quality def: "Surface shape that refers to the inward or outward curvature of the surface." [PATOC:MAH] subset: attribute_slim ! Attribute slim is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002006 name: 2-D shape namespace: quality def: "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." [PATOC:CJM] subset: attribute_slim ! Attribute slim synonym: "2-D projection" RELATED [] synonym: "cross-sectional" RELATED [] is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002007 name: convex 3-D shape namespace: quality def: "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave." [PATOC:CJM] comment: Use this term or an is_a child of this term when the entire shape of the object is known. subset: attribute_slim ! Attribute slim xref: Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002014 name: structure, cavities namespace: quality def: "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas." [PATOC:GVG] subset: attribute_slim ! Attribute slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002039 name: biconcave namespace: quality def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] subset: value_slim ! Value slim is_a: PATO:0001857 ! concave property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002078 name: hollow namespace: quality def: "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within." [url:http://www.merriam-webster.com/dictionary/hollow] subset: value_slim ! Value slim is_a: PATO:0002014 ! structure, cavities property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002099 name: differentiated namespace: quality def: "A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type." [PATOC:GVG] subset: value_slim ! Value slim is_a: PATO:0001397 ! cellular potency property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002266 name: 3-D shape namespace: quality def: "A shape that inheres in a 3 dimensional entity." [PATOC:OREGON] is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002300 name: increased quality namespace: quality def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002301 name: decreased quality namespace: quality def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002303 name: decreased object quality namespace: quality def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002305 name: increased object quality namespace: quality def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002318 name: superelliptic namespace: quality def: "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt" [wiktionary:superellipse] synonym: "LamC) curve" EXACT [] is_a: PATO:0002006 ! 2-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: UBERON:0000000 name: processual entity namespace: uberon def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity] subset: upper_level ! abstract upper-level terms not directly useful for analysis disjoint_from: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000002 name: uterine cervix namespace: uberon def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix] comment: This class was created automatically from a combination of ontologies. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "canalis cervicis uteri" EXACT [FMA:17740, FMA:TA] synonym: "cervical canal" EXACT [] synonym: "cervical canal of uterus" EXACT [] synonym: "cervix" EXACT [] synonym: "cervix of uterus" EXACT [] synonym: "cervix uteri" EXACT [EMAPA:29927] synonym: "neck of uterus" EXACT [] synonym: "uterine cervix" EXACT [] xref: BTO:0001421 xref: EFO:0000979 xref: EMAPA:29927 xref: EV:0100114 xref: FMA:17740 xref: GAID:376 xref: MA:0000392 xref: MAT:0000292 xref: MESH:A.05.360.319.679.256 xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA xref: SCTID:245494008 xref: VHOG:0001359 is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0000003 name: naris namespace: uberon def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [UBERON:MAH] comment: consistency notes: we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure. Taxon notes: in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: upper_ontology_conflict ! Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0000311 xref: EHDAA2:0001225 xref: EHDAA:9083 xref: EMAPA:17847 xref: MA:0000282 xref: SCTID:272650008 xref: TAO:0000550 xref: VHOG:0000663 xref: ZFA:0000550 xref: galen:Naris is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000161 ! orifice is_a: UBERON:0003102 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! surface structure relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0000004 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! olfactory apparatus relationship: part_of UBERON:0000004 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory apparatus [Term] id: UBERON:0000004 name: olfactory apparatus namespace: uberon def: "a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)." [Wikipedia:Nose] comment: TODO - distinguish generic olfactory apparatus from nose; we have olfactory organ for the generic organ - add new class 'olfactory structure'? subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "nasal sac" EXACT SENSU [ZFA:0000047] synonym: "nose" EXACT [] synonym: "peripheral olfactory organ" EXACT [] synonym: "proboscis" RELATED [] xref: BTO:0000840 xref: EFO:0000828 xref: EHDAA2:0001274 xref: EHDAA:1502 xref: EMAPA:16542 xref: EV:0100037 xref: EV:0100370 xref: FMA:46472 xref: GAID:77 xref: MA:0000281 xref: MAT:0000139 xref: MESH:A.01.456.505.733 xref: MIAA:0000139 xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA xref: SCTID:181195007 xref: TAO:0000047 xref: ZFA:0000047 xref: galen:Nose xref: ncithesaurus:Nose is_a: UBERON:0002268 ! olfactory organ relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0004089 ! midface relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! olfactory system relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory system [Term] id: UBERON:0000005 name: chemosensory organ namespace: uberon subset: functional_classification ! functional_classification subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0005726 ! chemosensory system [Term] id: UBERON:0000006 name: islet of Langerhans namespace: uberon def: "Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells." [Wikipedia:Islet_of_Langerhans] comment: A primitive exocrine pancreas can be found in holocephalan cartilaginous fish; a pancreatic duct directly ending in the gut lumen is connected to a glandular structure made of exocrine cells and associated with cell islets, which comprises three different hormone-producing cell types: insulin, somatostatin and glucagon (Yui and Fujita, 1986)[PMID:16417468] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "island of Langerhans" RELATED [BTO:0000991] synonym: "island of pancreas" RELATED [BTO:0000991] synonym: "islets of langerhans" RELATED [] synonym: "pancreatic insula" EXACT [] synonym: "pancreatic islet" EXACT [] xref: AAO:0010406 xref: BTO:0000991 xref: EFO:0000856 xref: EMAPA:19246 xref: EMAPA:19247 xref: EMAPA:19248 xref: EV:0100130 xref: FMA:16016 xref: GAID:324 xref: MA:0000127 xref: MAT:0000076 xref: MESH:A.03.734.414 xref: MIAA:0000076 xref: VHOG:0000646 xref: XAO:0000159 xref: ncithesaurus:Islet_of_Langerhans is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000016 ! endocrine pancreas [Term] id: UBERON:0000007 name: pituitary gland namespace: uberon def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator] comment: Taxon notes: The lamprey possesses a distinct pituitary organ and hormones, the ascidian does not show distinct evidence of them [Sower S, Freamat M, Kavanaugh S. The origins of the vertebrate hypothalamicbpituitarybgonadal (HPG) and hypothalamicbpituitarybthyroid (HPT) endocrine systems: new insights from lampreys. Gen Comp Endocrinol 2009;161:20-9] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "glandula pituitaria" RELATED [BTO:0001073] synonym: "hypophysis" RELATED [ZFA:0000118] synonym: "hypophysis cerebri" RELATED [MA:0000176] synonym: "pituitary" EXACT [BTO:0001073] synonym: "pituitary body" EXACT [BTO:0001073] xref: AAO:0010536 xref: BM:Die-Hy-HY xref: BTO:0001073 xref: EFO:0000857 xref: EHDAA2:0001471 xref: EHDAA:2183 xref: EHDAA:4477 xref: EMAPA:16647 xref: EMAPA:16898 xref: EV:0100132 xref: FMA:13889 xref: GAID:457 xref: MA:0000176 xref: MAT:0000077 xref: MESH:A.06.407.747 xref: MIAA:0000077 xref: NIF_GrossAnatomy:birnlex_1353 xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA xref: SCTID:181125003 xref: TAO:0000118 xref: VHOG:0000143 xref: XAO:0000017 xref: ZFA:0000118 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png xref: ncithesaurus:Pituitary_Gland is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010133 ! neuroendocrine gland relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0000009 name: submucosa namespace: uberon def: "A layer of dense irregular connective tissue in the gastrointestinal tract that supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle (fibers running circularly within layer of longitudinal muscle). [WP,unvetted]." [Wikipedia:Submucosa] comment: see comments re FMA for mucosa subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "organ submucosa" EXACT [FMA:85391] synonym: "region of submucosa" EXACT [FMA:85392] synonym: "submucosa of organ" EXACT [FMA:85391] synonym: "submucosa of region of organ" EXACT [FMA:85392] synonym: "submucous layer" RELATED [BTO:0002107] synonym: "tela submucosa" RELATED [BTO:0002107] xref: BTO:0002107 xref: FMA:85391 xref: FMA:85392 xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png xref: ncithesaurus:Submucosa is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0000010 name: peripheral nervous system namespace: uberon def: "Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system" [FB:gg, OMD:peripheral+nervous+system, Wikipedia:Peripheral_nervous_system, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "PNS" RELATED [] xref: AAO:0000429 xref: BILA:0000081 xref: BTO:0001028 xref: EFO:0000891 xref: EHDAA2:0001445 xref: EHDAA:2893 xref: EMAPA:16665 xref: EMAPA:18370 xref: EV:0100335 xref: FBbt:00005098 xref: FMA:9903 xref: GAID:715 xref: MA:0000218 xref: MAT:0000338 xref: MESH:A.08.800 xref: MIAA:0000338 xref: NIF_GrossAnatomy:birnlex_1111 xref: SCTID:362292005 xref: TAO:0000142 xref: VHOG:0000399 xref: XAO:0000178 xref: ZFA:0000142 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png xref: ncithesaurus:Peripheral_Nervous_System is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system property_value: "spatially_disjoint_from" UBERON:0001017 [Term] id: UBERON:0000011 name: parasympathetic nervous system namespace: uberon def: "The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]." [Wikipedia:Parasympathetic_nervous_system] comment: Development notes: has developmental contribution from NC in verteberates (RCN:2012) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "PNS - parasympathetic" EXACT [] synonym: "parasympathetic part of autonomic division of nervous system" EXACT [] synonym: "pars parasympathica divisionis autonomici systematis nervosi" EXACT [FMA:9907, FMA:TA] xref: AAO:0010488 xref: BTO:0001833 xref: EFO:0000894 xref: EHDA:10096 xref: EHDAA2:0001402 xref: EHDAA:4655 xref: EMAPA:17270 xref: FMA:9907 xref: GAID:708 xref: MA:0000223 xref: MAT:0000101 xref: MESH:A.08.800.050.600 xref: MIAA:0000101 xref: NIF_GrossAnatomy:birnlex_2517 xref: SCTID:362496006 xref: TAO:0001575 xref: VHOG:0000755 xref: ZFA:0001575 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: ncithesaurus:Parasympathetic_Nervous_System is_a: UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0000012 name: somatic nervous system namespace: uberon def: "The part of the peripheral nervous system consisting of efferent nerves responsible for stimulating muscle contraction, including all the neurons connected with skeletal muscles, skin, and sense organs[WP, modified]." [Wikipedia:Somatic_nervous_system] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "PNS - somatic" EXACT [] synonym: "somatic nervous system, somatic division" EXACT [NIF_GrossAnatomy:nlx_anat_100301] synonym: "somatic peripheral nervous system" EXACT [NIF_GrossAnatomy:nlx_anat_100301] xref: EFO:0000892 xref: EFO:0000898 xref: FMA:9904 xref: MA:0002850 xref: MAT:0000099 xref: MAT:0000342 xref: MIAA:0000099 xref: MIAA:0000342 xref: NIF_GrossAnatomy:nlx_anat_100301 xref: WBbt:0005760 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0000013 name: sympathetic nervous system namespace: uberon def: "The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [Wikipedia:Sympathetic_nervous_system] comment: Development notes: has developmental contribution from NC in verteberates (RCN:2012) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pars sympathica divisionis autonomici systematis nervosi" EXACT [FMA:9906, FMA:TA] synonym: "sympathetic nervous system" EXACT [] synonym: "sympathetic part of autonomic division of nervous system" EXACT [] xref: AAO:0010487 xref: BTO:0001832 xref: EFO:0000893 xref: EHDAA2:0001971 xref: EHDAA:3769 xref: EMAPA:16985 xref: FMA:9906 xref: GAID:710 xref: MA:0000225 xref: MESH:A.08.800.050.800 xref: MIAA:0000100 xref: NIF_GrossAnatomy:birnlex_2516 xref: SCTID:362484004 xref: TAO:0001576 xref: VHOG:0000384 xref: ZFA:0001576 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: ncithesaurus:Sympathetic_Nervous_System is_a: UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0000014 name: zone of skin namespace: uberon def: "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin] comment: we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive synonym: "portion of skin" EXACT [] synonym: "region of skin" EXACT [] synonym: "skin" EXACT [MA:0000151] synonym: "skin region" EXACT [] synonym: "skin zone" EXACT [] xref: EHDAA2:0001844 xref: EHDAA:6530 xref: EV:0100152 xref: FMA:86166 xref: GAID:933 xref: MA:0000151 xref: MAT:0000284 xref: MESH:A.17.815 xref: MIAA:0000284 xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA xref: SCTID:20795001 xref: VHOG:0000860 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0000015 name: anatomical boundary namespace: uberon def: "Structural anatomical relation which holds between each anatomical entity of one to three dimensions and some immaterial anatomical entity of one lower dimension such that the latter demarcates (delimits) the former from its neighborhood." [FMA:256502] synonym: "anatomical boundary entity" EXACT [FMA:50705] xref: AEO:0000192 xref: FMA:50705 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0000016 name: endocrine pancreas namespace: uberon def: "The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]." [GOC:GO, Wikipedia:Endocrine_pancreas] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "endocrine pancreas" EXACT [] synonym: "endocrine part of pancreas" RELATED [BTO:0000650] synonym: "islets of Langerhans" RELATED [] synonym: "pars endocrina pancreatis" EXACT [] xref: BTO:0000650 xref: EV:0100129 xref: FMA:16018 xref: MA:0001582 xref: MESH:A.03.734.414 xref: SCTID:361339003 xref: TAO:0001260 xref: VHOG:0000049 xref: ZFA:0001260 xref: ncithesaurus:Endocrine_Pancreas is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus is_a: UBERON:0002368 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! endocrine gland relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0000017 name: exocrine pancreas namespace: uberon def: "The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]. The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:GO, Wikipedia:Exocrine_pancreas] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "exocrine pancreas" EXACT [] synonym: "exocrine part of pancreas" RELATED [BTO:0000434] synonym: "pars exocrina pancreatis" EXACT [] xref: AAO:0010407 xref: BTO:0000434 xref: EV:0100093 xref: FMA:16017 xref: MA:0002415 xref: SCTID:248202004 xref: TAO:0001249 xref: VHOG:0000048 xref: XAO:0000137 xref: ZFA:0001249 xref: ncithesaurus:Exocrine_Pancreas is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus is_a: UBERON:0002365 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! exocrine gland relationship: part_of UBERON:0001264 ! pancreas relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0000018 name: compound eye namespace: uberon def: "A light sensing organ composed of ommatidia" [FB:gg, Wikipedia:Compound_eye] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Facettenauge" RELATED [BTO:0001921] synonym: "Komplexauge" RELATED [BTO:0001921] synonym: "adult compound eye" RELATED [] synonym: "insect eye" RELATED [] synonym: "zusammengesetztes Auge" RELATED [BTO:0001921] xref: BTO:0001921 xref: FBbt:00004508 xref: HAO:0000217 xref: TGMA:0000024 is_a: UBERON:0000970 ! eye relationship: part_of UBERON:0003153 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! head capsule [Term] id: UBERON:0000019 name: camera-type eye namespace: uberon alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181 def: "The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid." [GO:0043010, Image:http://genome.cshlp.org/content/14/8/1555/F1.large.jpg, Image:http://www.pnas.org/content/94/6/2098/F1.large.jpg] comment: AO notes: FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ). MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "camera-type eye plus associated structures" RELATED [] synonym: "eye" BROAD [FMA:54448] synonym: "orbital part of face" EXACT [FMA:54448] synonym: "orbital region" EXACT [FMA:54448] synonym: "regio orbitalis" EXACT [FMA:54448, FMA:TA] synonym: "vertebrate eye" NARROW [] xref: AAO:0010340 xref: BTO:0004688 xref: EHDAA2:0000484 xref: EHDAA:936 xref: EMAPA:16198 xref: FMA:54448 xref: MA:0000261 xref: NIF_GrossAnatomy:birnlex_1169 xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA xref: SCTID:181143004 xref: TAO:0000107 xref: VHOG:0000275 xref: XAO:0000179 xref: ZFA:0000107 xref: ncithesaurus:Eye is_a: UBERON:0000047 ! simple eye is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0004088 ! ocular region relationship: part_of UBERON:0001017 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! central nervous system [Term] id: UBERON:0000020 name: sense organ namespace: uberon def: "An organ that is part of a sense organ system." [Wikipedia:Sense_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Sinnesorgan" RELATED [BTO:0000202] synonym: "organ of sense organ system" EXACT [OBOL:automatic] synonym: "organ of sensory organ system" EXACT [OBOL:automatic] synonym: "organ of sensory system" EXACT [OBOL:automatic] synonym: "sense organ system organ" EXACT [OBOL:automatic] synonym: "sensillum" NARROW [WBbt:0006929] synonym: "sensor" RELATED [] synonym: "sensory organ" EXACT [] synonym: "sensory organ system organ" EXACT [OBOL:automatic] synonym: "sensory system organ" EXACT [OBOL:automatic] xref: AEO:0000094 xref: BTO:0000202 xref: EHDAA2:0001824 xref: EHDAA:500 xref: EMAPA:16192 xref: FBbt:00005155 xref: GAID:63 xref: HAO:0000930 xref: MA:0000017 xref: MESH:A.09 xref: SCTID:244485009 xref: VHOG:0001407 xref: WBbt:0006929 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png is_a: UBERON:0000062 ! organ [Term] id: UBERON:0000021 name: cutaneous appendage namespace: uberon def: "Appendage that protrudes from the skin." [UBERON:cjm] comment: examples: hair, nail (FMA); feather, claw, hoof, horn, wattle, spur, beak, scale(?), antler, bristle. Mammary glands develop by similar mechanisms, and their is an argument for including them here (e.g. PMID:20484386), but they don't fit the current definition. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "epidermal appendage" NARROW [] synonym: "epidermal growth" RELATED [] synonym: "skin appendage" EXACT [FMA:71012] xref: FMA:71012 xref: SCTID:276160000 is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0000022 name: feather namespace: uberon def: "one of the epidermal growths that form the distinctive outer covering, or plumage, on birds. Feathers are formed in tiny follicles in the epidermis, or outer skin layer, that produce keratin proteins. The N2-keratins in feathers, beaks and claws b and the claws, scales and shells of reptiles b are composed of protein strands hydrogen-bonded into N2-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the N1-keratins of mammalian hair, horns and hoof. The exact signals that induce the growth of feathers on the skin are not known but it has been found that the transcription factor cDermo-1 induces the growth of feathers on skin and scales on the leg." [Wikipedia:Feather] comment: They are among the characteristics that distinguish the extant Aves from other living groups. Feathers have also been noticed in those Theropoda which have been termed feathered dinosaurs. Although feathers cover most parts of the body of birds, they arise only from certain well-defined tracts on the skin. They aid in flight, thermal insulation, waterproofing and coloration that helps in communication and protection subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000447 xref: EFO:0000955 xref: GAID:1214 xref: MAT:0000156 xref: MESH:A.13.370 xref: OpenCyc:Mx4rvVjW-5wpEbGdrcN5Y29ycA xref: SCTID:410027006 xref: http://upload.wikimedia.org/wikipedia/commons/4/41/Parts_of_feather_modified.jpg is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0000023 name: wing namespace: uberon def: "Appendage that is used to produce lift for flight through the air." [Wikipedia:Wing] comment: This class is not monophyletic. See also: GO:0007629 subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001463 xref: EFO:0000885 xref: GAID:1217 xref: MAT:0000202 xref: MESH:A.13.395.823 xref: MIAA:0000202 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0000024 name: forelimb wing namespace: uberon def: "Forelimb that is used to produce lift for flight through the air." [] comment: TODO - check specific definition of forelimb is_a: UBERON:0000023 ! wing is_a: UBERON:0002102 ! forelimb property_value: "homologous_to" UBERON:0002102 [Term] id: UBERON:0000025 name: tube namespace: uberon def: "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790] synonym: "epithelial or endothelial tube" EXACT [] xref: galen:Tube is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000026 name: appendage namespace: uberon def: "Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage] comment: GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "limbs/digits/tail" RELATED [MP:0000001] xref: AEO:0000193 xref: BILA:0000018 xref: CARO:0010003 xref: EFO:0000799 xref: EHDAA2:0003193 xref: EV:0100155 xref: FBbt:00007000 xref: HAO:0000144 xref: MAT:0000023 xref: MIAA:0000023 xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA xref: VAO:0000075 xref: XAO:0000218 xref: ncithesaurus:Appendage is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002097 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! skin of body relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0000029 name: lymph node namespace: uberon def: "Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system. The lymph node is surrounded by a fibrous capsule, and inside the lymph node the fibrous capsule extends to form trabeculae. The substance of the lymph node is divided into the outer cortex and the inner medulla surrounded by the former all around except for at the hilum, where the medulla comes in direct contact with the surface. Thin reticular fibers, elastin and reticular fibers form a supporting meshwork called reticular network (RN) inside the node, within which the white blood cells (WBCs), most prominently, lymphocytes are tightly packed as follicles in the cortex. Elsewhere, there are only occasional WBCs. The RN provides not just the structural support, but also provide surface for adhesion of the dendritic cells, macrophages and lymphocytes. It allows for exchange of material with blood through the high endothelial venules and provides the growth and regulatory factors necessary for activation and maturation of immune cells[WP]." [GAID:947, Wikipedia:Lymph_node] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: BTO:0000784 xref: EFO:0000872 xref: EV:0100050 xref: FMA:5034 xref: GAID:947 xref: MA:0000139 xref: MAT:0000442 xref: MESH:A.15.382.520.604.412 xref: OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA xref: SCTID:181756000 xref: VHOG:0001273 xref: ZFA:0005318 xref: galen:Lymphnode xref: ncithesaurus:Lymph_Node is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0000030 name: lamina propria namespace: uberon def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lamina propria mucosa" EXACT [] synonym: "lamina propria mucosae" EXACT [] synonym: "tunica propria" RELATED [BTO:0002330] xref: BTO:0002330 xref: FMA:62517 xref: SCTID:298225002 xref: ncithesaurus:Lamina_Propria is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0000031 name: lamina propria of trachea namespace: uberon synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria of windpipe" EXACT [OBOL:automatic] synonym: "trachea lamina propria" EXACT [] synonym: "trachea lamina propria mucosa" EXACT [OBOL:automatic] synonym: "trachea lamina propria mucosae" EXACT [OBOL:automatic] synonym: "tracheal lamina propria" EXACT [] synonym: "windpipe lamina propria" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosa" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosae" EXACT [OBOL:automatic] xref: MA:0001858 xref: ncithesaurus:Trachea_Lamina_Propria is_a: UBERON:0004779 ! respiratory system lamina propria is_a: UBERON:0009644 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! trachea non-cartilage connective tissue relationship: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0000032 name: cranial structure namespace: uberon def: "skeletal element that is part of a cranium." [UBERON:automatic] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms is_a: UBERON:0004765 ! skeletal element [Term] id: UBERON:0000033 name: head namespace: uberon alt_id: UBERON:FBbt_00000004-FBbt_00003007-FMA_46565-FMA_7154-FMA_87596-MA_0000023-MA_0000316-MIAA_0000017-MIAA_0000149-MIAA_0000294-MIAA_0000340-WBbt_0005739-XAO_0003024-ZFA_0000737-ZFA_0001114 def: "The head is the anterior-most division of the body [GO]." [GO:0060322, Wikipedia:Head] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adult head" NARROW [] synonym: "cephalic area" RELATED [SPD:0000016] synonym: "head (volume)" EXACT [FMA:7154] xref: AAO:0010335 xref: AEO:0000106 xref: BILA:0000115 xref: BTO:0000282 xref: EFO:0000964 xref: EHDAA2:0003106 xref: FBbt:00000004 xref: FMA:7154 xref: GAID:61 xref: HAO:0000397 xref: MA:0000023 xref: MAT:0000294 xref: MESH:A.01.456 xref: MIAA:0000294 xref: NIF_GrossAnatomy:birnlex_1230 xref: OpenCyc:Mx4rEOLm4rgPEdmAAAACs6hRjg xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA xref: SCTID:302548004 xref: SPD:0000016 xref: TAO:0001114 xref: TGMA:0000002 xref: WBbt:0005739 xref: XAO:0003024 xref: ZFA:0001114 xref: galen:Head xref: ncithesaurus:Head is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000153 ! anterior region of body relationship: part_of UBERON:0007811 ! craniocervical region property_value: "spatially_disjoint_from" UBERON:0000948 property_value: "spatially_disjoint_from" UBERON:0002100 [Term] id: UBERON:0000035 name: primary ovarian follicle namespace: uberon synonym: "folliculus ovaricus primarius" EXACT [] synonym: "ovary primary follicle" EXACT [MA:0002907] synonym: "preantral follicle of ovary" EXACT [] synonym: "primary egg follicle" RELATED [] synonym: "primary follicle of ovary" EXACT [FMA:18634] xref: BTO:0000410 xref: EMAPA:19284 xref: FMA:18634 xref: MA:0002907 xref: SCTID:258665002 is_a: UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000036 name: secondary ovarian follicle namespace: uberon synonym: "antral follice" EXACT [GO:0001547] synonym: "antral follicle of ovary" EXACT [] synonym: "antral ovarian follice" EXACT [GO:0001547] synonym: "folliculus ovaricus secondarius" EXACT [] synonym: "ovary antral follicle" EXACT [MA:0002909] synonym: "ovary secondary follicle" EXACT [MA:0002908] synonym: "secondary egg follicle" RELATED [] synonym: "secondary follicle of ovary" EXACT [] xref: EMAPA:29862 xref: FMA:18637 xref: MA:0002908 xref: MA:0002909 is_a: UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000037 name: tertiary ovarian follicle namespace: uberon def: "Ovarian follicle is the basic unit of female reproductive biology and is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte. These eggs/ova are only developed once every menstrual cycle (i. e, once a month). [WP,unvetted]." [Wikipedia:Graafian_follicle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Graafian follicle" EXACT [] synonym: "folliculi ovarici vesiculosi" EXACT [FMA:18641, FMA:TA] synonym: "folliculus ovaricus tertiarius" EXACT [] synonym: "folliculus ovaricus tertiarius (vesiculosus)" EXACT [FMA:18641] synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT [] synonym: "tertiary egg follicle" RELATED [] synonym: "tertiary follicle of ovary" EXACT [FMA:18641] synonym: "vesicular follicle of ovary" EXACT [FMA:18641] synonym: "vesicular ovarian follicle" EXACT [FMA:18641] xref: EMAPA:30763 xref: FMA:18641 xref: SCTID:362261008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG xref: ncithesaurus:Graafian_Follicle is_a: UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000038 name: follicular fluid namespace: uberon def: "The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes." [MESH:D015571, Wikipedia:Follicular_fluid] comment: Follicular fluid is a liquid which fills the follicular antrum and surrounds the ovum in an ovarian follicle. This fluid is rich in hyaluronic acid. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "antral fluid, ovarian follicle" RELATED [] synonym: "liquor follicularis" EXACT [FMA:18665] synonym: "liquor folliculi" EXACT [] synonym: "ovarian follicular fluid" RELATED [BTO:0004383] synonym: "ovary follicle fluid" EXACT [MA:0002511] synonym: "ovary follicular fluid" RELATED [BTO:0004383] xref: BTO:0004383 xref: FMA:18665 xref: GAID:372 xref: MA:0002511 xref: MESH:A.05.360.319.114.630.535.150 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png xref: ncithesaurus:Ovarian_Follicle_Fluid is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0006537 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! female reproductive system fluid/secretion relationship: part_of UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000039 name: follicular antrum namespace: uberon def: "Region of ovarian follicle filled with follicular fluid." [Wikipedia:Follicular_antrum, http://en.wikipedia.org/wiki/Follicular_antrum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "antral cavity" EXACT [FMA:18675] synonym: "antrum folliculare" EXACT [FMA:18675] xref: FMA:18675 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000040 name: Leydig's organ namespace: uberon def: "A hemopoietic organ found in elasmobranchs. Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus." [Wikipedia:Leydig's_organ, http://www.elasmo-research.org/education/topics/p_blood_cells.htm] comment: Taxon notes: Found in elasmobranchs (sharks and rays) but with some exceptions. Phenotype notes: Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus). Structure notes: divided into dorsal and ventral patches, gradation varies between species. Lacks erythroblasts and fat cells[Honma 1983] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0000041 name: dermal denticle namespace: uberon def: "Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VAO]. small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water[WP]." [VAO:0000079, Wikipedia:Dermal_denticle] comment: TODO check dentin def // Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "placoid scale" EXACT [] xref: VAO:0000079 is_a: UBERON:0004756 ! dermal skeletal element [Term] id: UBERON:0000042 name: serous membrane namespace: uberon def: "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]." [Wikipedia:Serosa, Wikipedia:Serous_membrane] comment: TODO - add generic membrane parent? TODO - split into serosa and serous membrane? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "serosa" EXACT [] synonym: "tunica serosa" EXACT [FMA:9581] synonym: "wall of serous sac" EXACT [FMA:9581] xref: FMA:45637 xref: FMA:9581 xref: GAID:19 xref: MESH:A.10.615.789 xref: SCTID:362878009 xref: ZFA:0005425 xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png xref: ncithesaurus:Serosa is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004457 ! cavity lining [Term] id: UBERON:0000043 name: tendon namespace: uberon def: "A fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons are similar to ligaments except that ligaments join one bone to another. Tendons and muscles work together and can only exert a pulling force." [BTO:0000421, OMD:connective+tissue, OMD:tendon, Wikipedia:Tendon, http://en.wikipedia.org/wiki/Tendon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sinew" RELATED [Wikipedia:Tendon] xref: AEO:0000091 xref: BTO:0001356 xref: EFO:0000952 xref: EHDAA2:0003091 xref: EMAPA:25053 xref: EV:0100149 xref: FMA:9721 xref: GAID:276 xref: MA:0000115 xref: MESH:A.02.880 xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA xref: SCTID:256667004 xref: VAO:0000073 xref: VHOG:0001286 xref: XAO:0000173 xref: galen:Tendon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Achilles-tendon.jpg/200px-Achilles-tendon.jpg xref: ncithesaurus:Tendon is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007846 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dense regular collagenous tissue relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: develops_from UBERON:0003089 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! sclerotome [Term] id: UBERON:0000044 name: dorsal root ganglion namespace: uberon def: "ganglion on the dorsal root of each spinal nerve that is one of a series of ganglia lodging cell bodies of sensory neurons[BTO]. Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves[..]. one on the posterior root of each spinal nerve, composed of unipolar nerve cell bodies of the sensory neurons of the nerve[TFD]." [Wikipedia:Dorsal_root_ganglion] comment: Development notes: The sensory ganglia of spinal nerves arise only from the neural crest, whereas many sensory ganglia of the bdorsalb cranial nerves arise from epibranchial placodes as well as the neural crest[doi: 10.1093/icb/icn065]. Other ontology notes: FMA treats dorsal root ganglion and spinal ganglion as equivalent labels. MA is the only ontology to introduce two classes here (also EHDAA2) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "DRG" RELATED [] synonym: "dorsal root ganglia" RELATED PLURAL [] synonym: "dorsal root ganglion" EXACT [BTO:0001264] synonym: "ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264] synonym: "ganglion spinale" RELATED [BTO:0001264] synonym: "ganglion spinalis" EXACT [FMA:5888] synonym: "spinal ganglion" EXACT [FMA:5888] xref: AAO:0011032 xref: BTO:0001264 xref: EFO:0000900 xref: EHDAA2:0000418 xref: EHDAA2:0001897 xref: EHDAA:2899 xref: EMAPA:16668 xref: EMAPA:18372 xref: EV:0100373 xref: FMA:5888 xref: MA:0000231 xref: MA:0000232 xref: MAT:0000162 xref: MIAA:0000162 xref: NIF_GrossAnatomy:birnlex_2596 xref: SCTID:244455004 xref: TAO:0000200 xref: VHOG:0000222 xref: XAO:0000210 xref: ZFA:0000200 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/DRG_Chicken_e7.jpg/200px-DRG_Chicken_e7.jpg xref: ncithesaurus:Dorsal_Root_Ganglion is_a: UBERON:0001800 ! sensory ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system is_a: UBERON:0007134 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! trunk ganglion [Term] id: UBERON:0000045 name: ganglion namespace: uberon alt_id: UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200 def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [Wikipedia:Ganglion] comment: TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ganglia" RELATED [] synonym: "neural ganglion" RELATED [BTO:0000497] xref: AAO:0010426 xref: AEO:0000135 xref: BTO:0000497 xref: EFO:0000899 xref: EHDAA2:0003135 xref: EHDAA:2897 xref: EHDAA:4662 xref: EHDAA:5621 xref: EHDAA:918 xref: EV:0100372 xref: FBbt:00005137 xref: FMA:5884 xref: MA:0002406 xref: MAT:0000207 xref: MAT:0000343 xref: MESH:A.08.340 xref: MIAA:0000207 xref: MIAA:0000343 xref: NIF_GrossAnatomy:nlx_anat_100302 xref: TAO:0000190 xref: TGMA:0001016 xref: VHOG:0000156 xref: WBbt:0005189 xref: XAO:0000209 xref: ZFA:0000190 xref: ncithesaurus:Ganglion is_a: UBERON:0000479 ! tissue is_a: UBERON:0003714 ! neural tissue relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0000010 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! peripheral nervous system relationship: part_of UBERON:0000010 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! peripheral nervous system disjoint_from: UBERON:0002420 ! basal ganglion [Term] id: UBERON:0000046 name: stemma namespace: uberon def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes] is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000047 name: simple eye namespace: uberon def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: TGMA:0000729 is_a: UBERON:0000970 ! eye [Term] id: UBERON:0000048 name: pinhole eye namespace: uberon def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye] subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000049 name: spherical lensed eye namespace: uberon def: "simple eye that consists of a lens of one refractive index" [Wikipepedia:Eye#Spherical_lensed_eye] subset: grouping_class ! Subset consisting of classes creating for grouping purposes is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000050 name: simple eye with multiple lenses namespace: uberon def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [Wikipedia:Eye#Multiple_lenses] subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000051 name: fornix of vagina namespace: uberon def: "There are three named fornices: The posterior fornix is the larger recess, behind the cervix. It is close to the rectouterine pouch. There are two smaller recesses in front and at the sides: the anterior fornix is close to the vesicouterine pouch. the lateral fornix[WP,unvetted]." [Wikipedia:Fornix_vaginae] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fornix" BROAD [] synonym: "fornix vaginae" EXACT [FMA:19985, FMA:TA] synonym: "vaginal fornix" EXACT [] xref: FMA:19985 xref: SCTID:245475003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: ncithesaurus:Vaginal_Fornix is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000996 ! vagina disjoint_from: UBERON:0000052 ! fornix of brain [Term] id: UBERON:0000052 name: fornix of brain namespace: uberon def: "The fornix (Latin, 'vault' or 'arch') is a C-shaped bundle of fibres in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. [WP,unvetted]." [Wikipedia:Fornix_of_brain] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brain fornix" EXACT [] synonym: "cerebral fornix" EXACT [] synonym: "fornix" BROAD [] synonym: "fornix of neuraxis" EXACT [FMA:83865] synonym: "neuraxis fornix" EXACT [FMA:83865] xref: FMA:83865 xref: MA:0002747 xref: NIF_GrossAnatomy:birnlex_705 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png xref: ncithesaurus:Cerebral_Fornix is_a: UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0000053 name: macula lutea namespace: uberon def: "Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea[WP]. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)" [MESH:A.09.371.729.522, Wikipedia:Macula_lutea] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "macula" RELATED [] synonym: "macula flava retinae" RELATED [BTO:0003015] synonym: "macula retinae" RELATED [BTO:0003015] synonym: "maculae" RELATED [] xref: BTO:0003015 xref: EV:0100349 xref: FMA:58637 xref: GAID:909 xref: MA:0001306 xref: MESH:A.09.371.729.522 xref: NIF_GrossAnatomy:birnlex_2540 xref: SCTID:362517001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png xref: ncithesaurus:Macula is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina disjoint_from: UBERON:0000054 ! macula [Term] id: UBERON:0000054 name: macula namespace: uberon def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern." [NULL:Macula_of_saccule, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "macula" EXACT [] synonym: "maculae" EXACT PLURAL [] synonym: "sensory macula" EXACT [ZFA:0000386] synonym: "sensory patch" EXACT [ZFA:0000386] xref: GAID:777 xref: TAO:0000386 xref: ZFA:0000386 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0000055 name: vessel namespace: uberon def: "A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm] comment: compare with UBERON:0008782 subset: grouping_class ! Subset consisting of classes creating for grouping purposes is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000056 name: ureter namespace: uberon def: "The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.[GO]. Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: There are only two ureters, the right and the left ureters." [GO:0090189, Wikipedia:Ureter] subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "metanephric duct" RELATED [ISBN10:0073040584, VHOG:0000605] xref: AAO:0010254 xref: BTO:0001409 xref: EFO:0000930 xref: EHDAA2:0002139 xref: EHDAA:9341 xref: EMAPA:17950 xref: EV:0100097 xref: FMA:9704 xref: GAID:438 xref: MA:0000378 xref: MAT:0000120 xref: MESH:A.05.810.776 xref: MIAA:0000120 xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA xref: SCTID:302511008 xref: VHOG:0000605 xref: XAO:0000144 xref: galen:Ureter xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png xref: ncithesaurus:Ureter is_a: UBERON:0000025 ! tube is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvis organ is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001008 ! excretory system relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0000057 name: urethra namespace: uberon def: "A tube which connects the urinary bladder to the outside of the body. In males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening. The external urethral sphincter is a striated muscle that allows voluntary control over urination." [Wikipedia:Urethra] comment: This class was created automatically from a combination of ontologies subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001426 xref: EFO:0000931 xref: EMAPA:30901 xref: EV:0100099 xref: FMA:19667 xref: GAID:390 xref: MA:0000379 xref: MAT:0000121 xref: MESH:A.05.360.444.492.726 xref: MIAA:0000121 xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA xref: SCTID:302513006 xref: VHOG:0001264 xref: XAO:0000153 xref: galen:Urethra xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: ncithesaurus:Urethra is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0005179 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pelvis organ relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: UBERON:0000058 name: duct namespace: uberon def: "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171] comment: TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anatomical duct" EXACT [] synonym: "exocrine duct" RELATED [] synonym: "exocrine gland duct" RELATED [] xref: FMA:30320 xref: XAO:0004000 xref: ZFA:0005171 xref: galen:Duct xref: ncithesaurus:Duct is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000059 name: large intestine namespace: uberon def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)] subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "intestinum crassum" RELATED [BTO:0000706] xref: AAO:0010396 xref: BTO:0000706 xref: EFO:0000840 xref: EMAPA:19252 xref: EV:0100077 xref: FMA:7201 xref: GAID:306 xref: MA:0000333 xref: MESH:A.03.492.411.495 xref: MIAA:0000046 xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA xref: SCTID:181254001 xref: VHOG:0000054 xref: XAO:0000131 xref: galen:LargeIntestine xref: ncithesaurus:Large_Intestine is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0000060 name: anatomical wall namespace: uberon alt_id: UBERON:0009915 def: "Anatomical organ component enclosing an organ cavity." [FMA:82482] comment: merged FMA organ wall in to this class synonym: "wall" EXACT [] synonym: "wall of organ" EXACT [FMA:82482] xref: EMAPA:25036 xref: FMA:82482 xref: galen:Wall is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000061 name: anatomical structure namespace: uberon alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094 def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "biological structure" EXACT [] xref: AAO:0010825 xref: AEO:0000003 xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: FBbt:00007001 xref: FMA:67135 xref: GAID:781 xref: HAO:0000003 xref: MA:0003000 xref: MESH:A.13 xref: SCTID:362889002 xref: TAO:0000037 xref: TGMA:0001823 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000062 name: organ namespace: uberon def: "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)] comment: note that CARO does not include a generic 'organ' class, only simple and compound organ xref: BILA:0000053 xref: EFO:0000634 xref: FMA:67498 xref: MA:0003001 xref: NIF_GrossAnatomy:birnlex_4 xref: OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA xref: ncithesaurus:Organ is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000467 ! anatomical system [Term] id: UBERON:0000063 name: organ segment namespace: uberon def: "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140] synonym: "organ region with fixed fiat boundary" EXACT [FMA:86140] synonym: "segment of organ" EXACT [FMA:86140] xref: FMA:86140 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000064 name: organ part namespace: uberon def: "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472] subset: disjointness_axiom_removed ! A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology. subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "cardinal organ part" EXACT [] xref: EFO:0000635 xref: FMA:82472 xref: SCTID:91717005 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000062 ! organ [Term] id: UBERON:0000065 name: respiratory tract namespace: uberon def: "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm] xref: EHDAA2:0001606 xref: EHDAA:1568 xref: EHDAA:2219 xref: EMAPA:16737 xref: MESH:A.04 xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA xref: SCTID:361110005 xref: VHOG:0000393 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000066 name: fully formed stage namespace: uberon def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. " [UBERON:cjm] synonym: "adult stage" BROAD [] synonym: "fully formed animal stage" EXACT [] synonym: "juvenile-adult stage" EXACT [] xref: BTO:0001043 xref: FBdv:00005369 xref: WBls:0000041 is_a: UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0000067 name: embryo stage part namespace: uberon def: "A stage that is part of the embryo stage." [UBERON:cjm] synonym: "embryonic stage part" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000068 name: embryo stage namespace: uberon def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." [] synonym: "embryogenesis" RELATED [] synonym: "embryonic stage" EXACT [] xref: EV:0300001 xref: FBdv:00005289 xref: OGES:000000 xref: OGES:000022 xref: SCTID:296280003 xref: XAO:1000012 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000104 ! life cycle disjoint_from: UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0000069 name: larval stage namespace: uberon def: "a distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva] comment: It is a misunderstanding that the larval form always reflects the group's evolutionary history. It could be the case, but often the larval stage has evolved secondarily, as in insects. In these cases the larval form might differ more from the group's common origin than the adult form[WP]. Uberon includes clade-specific subclasses. synonym: "ammocoete" NARROW SENSU [Wikipedia:Larva] synonym: "ammocoete stage" NARROW SENSU [Wikipedia:Larva] synonym: "bipinnaria" NARROW SENSU [Wikipedia:Larva] synonym: "bipinnaria stage" NARROW SENSU [Wikipedia:Larva] synonym: "caterpillar" NARROW SENSU [Wikipedia:Larva] synonym: "caterpillar stage" NARROW SENSU [Wikipedia:Larva] synonym: "glochidium" NARROW SENSU [Wikipedia:Larva] synonym: "glochidium stage" NARROW SENSU [Wikipedia:Larva] synonym: "grub" NARROW SENSU [Wikipedia:Larva] synonym: "grub stage" NARROW SENSU [Wikipedia:Larva] synonym: "larva" RELATED [] synonym: "larva stage" EXACT [] synonym: "leptocephalus" NARROW SENSU [Wikipedia:Larva] synonym: "leptocephalus stage" NARROW SENSU [Wikipedia:Larva] synonym: "maggot" NARROW SENSU [Wikipedia:Larva] synonym: "maggot stage" NARROW SENSU [Wikipedia:Larva] synonym: "naiad, nymph" NARROW SENSU [Wikipedia:Larva] synonym: "naiad, nymph stage" NARROW SENSU [Wikipedia:Larva] synonym: "nauplius" NARROW SENSU [Wikipedia:Larva] synonym: "nauplius stage" NARROW SENSU [Wikipedia:Larva] synonym: "nymph" NARROW SENSU [Wikipedia:Larva] synonym: "nymph stage" NARROW SENSU [Wikipedia:Larva] synonym: "planula" NARROW SENSU [Wikipedia:Larva] synonym: "planula stage" NARROW SENSU [Wikipedia:Larva] synonym: "trochophore" NARROW SENSU [Wikipedia:Larva] synonym: "trochophore stage" NARROW SENSU [Wikipedia:Larva] synonym: "veliger" NARROW SENSU [Wikipedia:Larva] synonym: "veliger stage" NARROW SENSU [Wikipedia:Larva] synonym: "wriggler" NARROW SENSU [Wikipedia:Larva] synonym: "wriggler stage" NARROW SENSU [Wikipedia:Larva] synonym: "zoea" NARROW SENSU [Wikipedia:Larva] synonym: "zoea stage" NARROW SENSU [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000915 xref: BTO:0000954 xref: EFO:0001303 xref: OGES:000008 is_a: UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0000070 name: pupal stage namespace: uberon def: "A life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa] synonym: "pupa stage" EXACT [] xref: FBdv:00005349 is_a: UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0000071 name: death stage namespace: uberon def: "End of the life of an organism." [XAO:0000437] comment: AO notes - ncit:Death is an outcome synonym: "death" EXACT [] xref: XAO:0000437 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000072 name: segment of respiratory tract namespace: uberon def: "An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic] comment: Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole synonym: "respiratory tract" RELATED [MA:0000434] xref: MA:0000434 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0000073 name: regional part of nervous system namespace: uberon def: "An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic] comment: grouping class synonym: "part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157] xref: NIF_GrossAnatomy:birnlex_1157 xref: SCTID:25087005 xref: ncithesaurus:Nervous_System_Part is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0000074 name: renal glomerulus namespace: uberon def: "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus] comment: ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. TODO - split glomerulus and glomerular tuft? DONE. GUDMAP: 'Together, the Bowmanbs capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule? subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "glomerular capillary tuft" RELATED [ZFA:0001288] synonym: "glomerular tuft" RELATED [] synonym: "glomerulus" BROAD [] synonym: "malphigian glomerulus" RELATED [BTO:0000530] synonym: "renal corpuscle" RELATED [] xref: AAO:0010388 xref: BTO:0000530 xref: EFO:0003667 xref: EV:0100386 xref: FMA:15624 xref: MA:0001657 xref: MESH:A.05.810.453.736.520 xref: XAO:0000146 xref: ZFA:0001288 xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png xref: ncithesaurus:Glomerulus is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001229 ! renal corpuscle relationship: part_of UBERON:0005322 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! mesonephric nephron disjoint_from: UBERON:0001047 ! neural glomerulus [Term] id: UBERON:0000075 name: subdivision of skeletal system namespace: uberon comment: note we consciously merge the two FMA classes below synonym: "skeletal system part" RELATED [] synonym: "skeletal system subdivision" EXACT [FMA:85544] synonym: "skeleton part" RELATED [] synonym: "subdivision of skeleton" RELATED [] synonym: "subdivision of skeleton (in vivo)" EXACT [FMA:23879] xref: FMA:23879 xref: FMA:85544 xref: SCTID:118966000 xref: galen:ComplexSkeletalStructure xref: ncithesaurus:Skeletal_System_Part is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001434 ! skeletal system [Term] id: UBERON:0000076 name: external ectoderm namespace: uberon def: "The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm] comment: Editor note: merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube). synonym: "surface ectoderm" EXACT [] xref: EHDAA2:0001968 xref: EHDAA:1494 xref: EHDAA:350 xref: EHDAA:4784 xref: EHDAA:4790 xref: EHDAA:4796 xref: EHDAA:7860 xref: EMAPA:16096 xref: EMAPA:16539 xref: FMA:87656 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png xref: ncithesaurus:Surface_Ectoderm is_a: UBERON:0000923 ! germ layer relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0000077 name: mixed endoderm/mesoderm-derived structure namespace: uberon def: "An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm] comment: Grouping term for query purposes. subset: grouping_class ! Subset consisting of classes creating for grouping purposes is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0000078 name: mixed ectoderm/mesoderm/endoderm-derived structure namespace: uberon def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm] comment: Grouping term for query purposes subset: grouping_class ! Subset consisting of classes creating for grouping purposes is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0000079 name: male reproductive system namespace: uberon def: "the organs associated with producing offspring in the gender that produces spermatozoa." [MP:0001145] synonym: "genitalia of male organism" EXACT [OBOL:automatic] synonym: "male genital organ" RELATED [BTO:0000082] synonym: "male genital system" EXACT [FMA:45664] synonym: "male genitalia" EXACT [] synonym: "male genitals" EXACT [] synonym: "male organism genitalia" EXACT [OBOL:automatic] synonym: "male organism reproductive system" EXACT [OBOL:automatic] synonym: "male reproductive tract" RELATED [MA:0000396] synonym: "reproductive system of male organism" EXACT [OBOL:automatic] synonym: "systema genitale masculinum" RELATED [BTO:0000082] xref: BTO:0000082 xref: EFO:0000970 xref: EHDAA2:0001054 xref: EHDAA:8136 xref: EMAPA:17968 xref: EV:0100101 xref: FBbt:00004927 xref: FMA:45664 xref: GAID:386 xref: HAO:0000505 xref: MA:0000396 xref: MESH:A.05.360.444 xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA xref: SCTID:361340001 xref: TGMA:0000634 xref: VHOG:0000725 xref: WBbt:0008423 xref: XAO:0000155 xref: ncithesaurus:Male_Reproductive_System is_a: UBERON:0000990 ! reproductive system relationship: part_of UBERON:0003101 ! male organism disjoint_from: UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000080 name: mesonephros namespace: uberon def: "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros] comment: By contrast to the pronephros, the histological features of the mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP] comment: Taxon notes: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain[WP] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Wolffian body" EXACT [BTO:0001542, GOC:yaf, MESH:A.16.254.500, Wikipedia:Mesonephros] synonym: "mesonephric kidney" EXACT [XAO:0000141] synonym: "mesonephroi" EXACT PLURAL [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "opisthonephros" RELATED [VHOG:0000038, XAO:0000141] synonym: "opisto nephros" RELATED [] synonym: "opistonephros" RELATED [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] xref: BTO:0001542 xref: EFO:0000928 xref: EHDAA2:0001130 xref: EHDAA:1581 xref: EHDAA:5903 xref: EMAPA:16744 xref: EMAPA:27644 xref: FMA:72171 xref: GAID:1308 xref: MESH:A.16.254.500 xref: SCTID:308799002 xref: VHOG:0000038 xref: XAO:0000141 xref: ZFA:0000529 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray986.png/200px-Gray986.png xref: ncithesaurus:Mesonephros is_a: UBERON:0002113 ! kidney relationship: part_of UBERON:0002323 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! body cavity relationship: part_of UBERON:0002405 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! immune system [Term] id: UBERON:0000081 name: metanephros namespace: uberon def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis." [GO:0001656, Wikipedia:Metanephros#Metanephros] comment: TODO check developmental relationships subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "definite kidney" RELATED [BTO:0001543] synonym: "definitive kidney" RELATED [BTO:0001543] synonym: "hind kidney" RELATED [BTO:0001543] synonym: "metanephron" EXACT [BTO:0001543] xref: BTO:0001543 xref: EHDAA2:0001137 xref: EHDAA:3089 xref: EHDAA:5911 xref: EMAPA:17207 xref: EMAPA:17373 xref: FMA:72172 xref: SCTID:308797000 xref: VHOG:0000039 xref: ncithesaurus:Metanephros is_a: UBERON:0002113 ! kidney [Term] id: UBERON:0000082 name: adult mammalian kidney namespace: uberon is_a: UBERON:0002113 ! kidney [Term] id: UBERON:0000083 name: mesonephric tubule namespace: uberon def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules] comment: TODO check xref: AAO:0010389 xref: EHDAA2:0001134 xref: EMAPA:27588 xref: EMAPA:27659 xref: VHOG:0000500 xref: XAO:0000148 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005103 ! mesonephric epithelium is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0005322 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! mesonephric nephron [Term] id: UBERON:0000084 name: ureteric bud namespace: uberon def: "a protrusion from the mesonephric duct during the development of the urinary and reproductive organs. It later develops into the adult kidney, except for the nephrons, which, in contrast, originate from the metanephric blastema[WP]. epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]" [MP:0010979, PMID:19828308, Wikipedia:Ureteric_bud] synonym: "diverticulum" RELATED [BTO:0001646] synonym: "metanephric bud" RELATED [BTO:0001646] synonym: "metanephric diverticulum" RELATED [Wikipedia:Metanephros#Metanephros] xref: BTO:0001646 xref: EHDAA2:0002140 xref: EHDAA:3091 xref: EHDAA:5917 xref: EMAPA:17209 xref: EMAPA:17376 xref: SCTID:361528000 xref: VHOG:0000541 xref: ncithesaurus:Metanephric_Diverticulum is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0007499 ! epithelial sac relationship: part_of UBERON:0003074 ! mesonephric duct [Term] id: UBERON:0000085 name: morula namespace: uberon def: "An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida[WP] The compacted embryo before cavity formation." [Wikipedia:Morula] xref: BTO:0001508 xref: EHDAA2:0000005 xref: GAID:1295 xref: MESH:A.16.254.270.550 xref: SCTID:361474003 xref: XAO:1000029 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png xref: ncithesaurus:Morula is_a: UBERON:0000307 ! blastula is_a: UBERON:0000922 ! embryo [Term] id: UBERON:0000086 name: zona pellucida namespace: uberon def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "oolemma" RELATED [BTO:0003135] synonym: "pellucid zone" RELATED [BTO:0003135] synonym: "striated membrane" RELATED [BTO:0003135] synonym: "vitelline envelope" RELATED [] synonym: "vitelline membrane" RELATED [] synonym: "zona radiata" RELATED [BTO:0003135] synonym: "zona striata" RELATED [BTO:0003135] xref: BTO:0003135 xref: EHDAA2:0002220 xref: EHDAA:31 xref: EHDAA:62 xref: EMAPA:16035 xref: EMAPA:16049 xref: FMA:18674 xref: GAID:410 xref: MA:0001715 xref: MESH:A.05.360.490.690.950 xref: ZFA:0001111 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png xref: ncithesaurus:Zona_Pellucida is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! female gonad relationship: part_of UBERON:0001305 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! ovarian follicle [Term] id: UBERON:0000087 name: inner cell mass namespace: uberon def: "Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed 'blastocyst cavity', as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast." [Wikipedia:Inner_cell_mass] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. synonym: "embryoblast" RELATED [] synonym: "pluriblast" RELATED [] xref: EFO:0000547 xref: EHDAA2:0000830 xref: EHDAA:40 xref: EMAPA:16041 xref: FMA:86557 xref: SCTID:361456007 xref: VHOG:0000742 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png xref: ncithesaurus:Inner_Cell_Mass is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000088 name: trophoblast namespace: uberon def: "Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg." [Wikipedia:Trophoblast] comment: Development notes: The postimplantation derivatives of the trophectoderm, which make up most of the fetal part of the placenta[PMID:19829370] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. synonym: "trophoblast layer" RELATED [MP:0005031] synonym: "trophoderm" RELATED [BTO:0001079] xref: BTO:0001079 xref: EV:0100120 xref: FMA:83029 xref: GAID:1152 xref: MESH:A.11.936 xref: SCTID:362839005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000358 ! blastocyst [Term] id: UBERON:0000089 name: hypoblast namespace: uberon def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm" [Wikipedia:Hypoblast, ZFIN:curator] comment: this term groups together disparate structures with different relationships. TODO - consider relationship to UBERON:0000091 subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mesendoderm" EXACT [ZFIN:ZDB-PUB-961014-576] xref: AAO:0000229 xref: AAO:0010619 xref: BTO:0003953 xref: EFO:0001930 xref: MAT:0000418 xref: MIAA:0000418 xref: TAO:0000117 xref: VHOG:0001222 xref: XAO:0003044 xref: ZFA:0000117 xref: http://upload.wikimedia.org/wikipedia/commons/0/02/Cell_differentiation_gastrula.PNG xref: ncithesaurus:Hypoblast is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0000923 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! germ layer relationship: part_of UBERON:0004750 ! blastoderm relationship: develops_from CL:0000000 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cell relationship: part_of UBERON:0002541 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! germ ring [Term] id: UBERON:0000090 name: blastocele namespace: uberon def: "fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis." [Wikipedia:Blastocele] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. synonym: "blastocoele" EXACT [] synonym: "blastocoelic cavity" EXACT [EHDAA2:0000175] synonym: "blastocyst cavity" EXACT [] synonym: "cleavage cavity" EXACT [] synonym: "segmentation cavity" EXACT [] xref: AAO:0010433 xref: EHDAA2:0000175 xref: EHDAA:50 xref: EMAPA:16044 xref: SCTID:361455006 xref: VHOG:0000811 xref: XAO:0000294 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Blastocyst.gif/200px-Blastocyst.gif is_a: UBERON:0002553 ! anatomical cavity property_value: "dubious_for_taxon" NCBITaxon:7955 [Term] id: UBERON:0000091 name: bilaminar disc namespace: uberon def: "the epiblast and the hypoblast, evolved from the embryoblast" [Wikipedia:Bilaminar_disc] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. synonym: "bilaminary embryonic disc" EXACT [] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray21.png/200px-Gray21.png xref: ncithesaurus:Bilaminar_Embryonic_Disc is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000092 name: post-embryonic stage namespace: uberon def: "stage succeeding embryo, including mature structure" [UBERON:cjm] synonym: "postembryonic" RELATED [] synonym: "postembryonic stage" EXACT [] xref: OGES:000010 xref: OGES:000014 xref: OGES:000024 xref: WBls:0000022 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000093 name: sulcus namespace: uberon def: "a depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)] is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000094 name: membrane organ namespace: uberon def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145] synonym: "membrane of organ" EXACT [] xref: FMA:7145 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0000095 name: cardiac neural crest namespace: uberon def: "portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]" [Wikipedia:Cardiac_neural_crest] comment: AO notes - ZFA treats this as a subtype of NC. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac neural crest complex" RELATED [Wikipedia:Cardiac_neural_crest] synonym: "complexus cristae neuralis cardiacus" RELATED [Wikipedia:Cardiac_neural_crest] xref: XAO:0004190 xref: ZFA:0001648 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0000100 name: blastopore namespace: uberon def: "Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore." [Wikipedia:Blastopore] comment: In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. subset: metazoa_core ! core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out xref: AAO:0000045 xref: BTO:0001695 xref: XAO:0000208 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0004735 ! archenteron relationship: part_of UBERON:0004879 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! marginal zone of embryo property_value: "dubious_for_taxon" NCBITaxon:7955 property_value: "homologous_to" FBbt:00000123 [Term] id: UBERON:0000101 name: lobe of lung namespace: uberon def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO] synonym: "lung lobe" EXACT [] synonym: "pulminory lobe" EXACT [] synonym: "pulmonary lobe" EXACT [FMA:7311] xref: FMA:7311 xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA xref: SCTID:245524004 xref: galen:LobeOfLung xref: ncithesaurus:Lung_Lobe is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000102 name: lung vasculature namespace: uberon def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] synonym: "lung vascular network" EXACT [OBOL:automatic] synonym: "pulmonary vasculature" EXACT [FMA:73750] synonym: "vascular network of lung" EXACT [OBOL:automatic] synonym: "vasculature of lung" EXACT [OBOL:automatic] xref: FMA:73750 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0000103 name: life cycle stage boundary namespace: uberon def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [UBERON:cjm] subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "life cycle stage transition event" EXACT [] synonym: "life cycle stage transition instant" EXACT [] xref: span:ProcessBoundary is_a: UBERON:0000000 ! processual entity disjoint_from: UBERON:0000105 ! life cycle stage [Term] id: UBERON:0000104 name: life cycle namespace: uberon def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [UBERON:cjm] subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "life" EXACT [] synonym: "lifespan" EXACT [] xref: FBdv_root:00000000 xref: OGES:000011 xref: ncithesaurus:Life is_a: UBERON:0000105 ! life cycle stage [Term] id: UBERON:0000105 name: life cycle stage namespace: uberon def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:cjm] subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "developmental stage" EXACT [] synonym: "stage" NARROW [] xref: BILS:0000105 xref: EFO:0000399 xref: WBls:0000002 xref: XAO:1000000 xref: ZFS:0100000 xref: ncithesaurus:Developmental_Stage is_a: UBERON:0000000 ! processual entity [Term] id: UBERON:0000106 name: zygote stage namespace: uberon def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [Wikipedia:Zygote] synonym: "1-cell stage" EXACT [] synonym: "fertilized egg stage" EXACT [BTO:0000854] synonym: "one cell stage" EXACT [] xref: BILS:0000106 xref: EHDAA:27 xref: EMAPA:16033 xref: VHOG:0000745 xref: XAO:1000001 xref: ZFS:0000001 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000107 name: cleavage stage namespace: uberon def: "The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)] xref: BILS:0000107 xref: EFO:0001290 xref: MESH:A.16.254.270 xref: OGES:000015 xref: OGES:000020 xref: XAO:1000004 is_a: UBERON:0000067 ! embryo stage part relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000108 name: blastula stage namespace: uberon def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] xref: BILS:0000108 xref: EFO:0001282 xref: GAID:1294 xref: OGES:000003 xref: OGES:000016 xref: OGES:000021 xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg xref: XAO:1000003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000109 name: gastrula stage namespace: uberon def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369] xref: BILS:0000109 xref: EFO:0001296 xref: FBdv:00005317 xref: OGES:000004 xref: OGES:000019 xref: XAO:1000005 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000110 name: neurula stage namespace: uberon def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841] xref: BILS:0000110 xref: XAO:1000006 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000111 name: organogenesis stage namespace: uberon def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis] synonym: "segmentation stage" RELATED [] xref: BILS:0000111 xref: OGES:000005 xref: OGES:000032 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000112 name: juvenile stage namespace: uberon def: "The stage of being a sexually immature adult animal." [XAO:1000010] xref: BILS:0000112 xref: BTO:0002168 xref: EFO:0001300 xref: EV:0300051 xref: OGES:000009 xref: XAO:1000010 xref: ZFS:0000042 xref: ZFS:0000043 is_a: UBERON:0000105 ! life cycle stage is_a: UBERON:0000113 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! post-juvenile adult stage relationship: part_of UBERON:0000066 ! fully formed stage [Term] id: UBERON:0000113 name: post-juvenile adult stage namespace: uberon alt_id: UBERON:MIAA_0000403-XAO_1000009 def: "The stage of being a sexually mature adult animal." [UBERON:cjm] synonym: "adult stage" BROAD [] xref: BILS:0000113 xref: BTO:0001043 xref: EV:0300064 xref: EV:0300070 xref: MIAA:0000403 xref: OGES:000026 xref: OGES:000027 xref: XAO:1000009 xref: ZFS:0000044 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000066 ! fully formed stage [Term] id: UBERON:0000114 name: lung connective tissue namespace: uberon def: "A portion of connective tissue that is part of a lung [Obol]." [OBOL:automatic] synonym: "connective tissue of lung" EXACT [OBOL:automatic] synonym: "lung interstitial tissue" RELATED [MA:0001782] synonym: "lung portion of connective tissue" EXACT [OBOL:automatic] synonym: "lung textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lung" EXACT [OBOL:automatic] synonym: "textus connectivus of lung" EXACT [OBOL:automatic] xref: MA:0001782 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003570 ! respiratory system connective tissue is_a: UBERON:0003593 ! thoracic cavity connective tissue [Term] id: UBERON:0000115 name: lung epithelium namespace: uberon def: "the epithelial layer of the lung." [MP:0006382] synonym: "epithelial tissue of lung" EXACT [OBOL:automatic] synonym: "epithelium of lung" EXACT [OBOL:automatic] synonym: "lung epithelial tissue" EXACT [OBOL:automatic] synonym: "pulmonary epithelium" RELATED [BTO:0001653] xref: BTO:0001653 xref: MA:0001783 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004802 ! respiratory tract epithelium [Term] id: UBERON:0000116 name: lung saccule namespace: uberon def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0000117 name: respiratory tube namespace: uberon def: "A tube in the respiratory tract." [GO:0030323] is_a: UBERON:0000025 ! tube is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0000118 name: lung bud namespace: uberon def: "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds] synonym: "lung bud" RELATED PLURAL [] synonym: "primary lung bud" RELATED [GO:0060572] synonym: "respiratory diverticulum" RELATED [Wikipedia:Lung_buds] xref: BTO:0001643 xref: EHDAA2:0004089 xref: SCTID:361427007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png xref: ncithesaurus:Respiratory_Diverticulum is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0000119 name: cell layer namespace: uberon def: "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm] synonym: "cell sheath" RELATED [] synonym: "layer of cells" EXACT [] is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0000120 name: blood brain barrier namespace: uberon def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier] synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: NIF_Subcellular:nlx_subcell_100205 xref: ncithesaurus:Blood-Brain_Barrier is_a: UBERON:0000119 ! cell layer [Term] id: UBERON:0000121 name: perineurium namespace: uberon def: "Connective tissue surrounding a fascicle." [Wikipedia:Perineurium] xref: BTO:0003153 xref: FMA:52585 xref: NIF_GrossAnatomy:nlx_anat_090205 xref: SCTID:362299001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png xref: ncithesaurus:Perineurium is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0000122 name: neuron projection bundle namespace: uberon alt_id: UBERON:0005163 def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBC:DOS, FBbt:00005099] synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [FBbt:00005099] synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 xref: FBbt:00005099 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0005162 ! multi-cell-component structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000123 name: endoneurium namespace: uberon def: "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus." [Wikipedia:Endodeurium] xref: FMA:52586 xref: NIF_GrossAnatomy:nlx_anat_090202 xref: SCTID:15931004 xref: ncithesaurus:Endoneurium is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0000124 name: epineurium namespace: uberon def: "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues." [Wikipedia:Epineurium] xref: BTO:0003154 xref: FMA:12234 xref: NIF_GrossAnatomy:nlx_anat_090203 xref: SCTID:64482002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png xref: ncithesaurus:Epineurium is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0000125 name: neural nucleus namespace: uberon def: "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO]." [GO:0048857, GO_REF:0000021, Wikipedia:Nucleus_(neuroanatomy)] comment: do not include NIF_Subcellular:sao1702920020 Nucleus. Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in \"subcortical\" because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in \"relatively compact\" and \"distiguishable by histology\" because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate. synonym: "neuraxis nucleus" EXACT [FMA:83686] synonym: "nucleus" BROAD [] synonym: "nucleus of neuraxis" RELATED [] xref: FMA:83686 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000126 name: cranial nerve nucleus namespace: uberon def: "collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves." [Wikipedia:Cranial_nerve_nucleus] synonym: "cranial neural nucleus" EXACT [FMA:54501] synonym: "nucleus of cranial nerve" EXACT [] xref: FMA:54501 xref: SCTID:280160003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0000127 name: facial nucleus namespace: uberon comment: FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial nucleus is distinct from facial motor nucleus. synonym: "facial VII motor nucleus" RELATED [MA:0001014] synonym: "facial VII nucleus" EXACT [MA:0001014] synonym: "facial nerve nucleus" EXACT [] synonym: "nucleus of facial nerve" EXACT [FMA:54572] xref: BM:Pons-VII xref: EHDAA2:0004638 xref: EV:0100267 xref: FMA:54572 xref: MA:0001014 xref: SCTID:280166009 xref: VHOG:0001412 xref: ncithesaurus:Facial_Nerve_Nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0000128 name: olivary body namespace: uberon def: "prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei" [Wikipedia:Olivary_body] synonym: "olive" RELATED [] synonym: "olive body" EXACT [] xref: BTO:0002299 xref: SCTID:279293003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0000130 name: transverse foramen namespace: uberon def: "Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves." [Wikipedia:Transverse_foramen] synonym: "foramen transversarium" EXACT [Wikipedia:Transverse_foramen] synonym: "foramen transversarium of cervical vertebra" EXACT [FMA:23998] synonym: "transverse foramen of cervical vertebra" EXACT [FMA:23997] xref: FMA:23997 xref: SCTID:280735005 is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000144 name: trochlea of humerus namespace: uberon def: "The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna." [Wikipedia:Trochlea_of_humerus] synonym: "humeral trochlea" EXACT [FMA:23370] xref: FMA:23370 xref: SCTID:282817004 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004404 ! distal epiphysis of humerus [Term] id: UBERON:0000151 name: pectoral fin namespace: uberon def: "The paired pectoral fins are located on each side, usually just behind the operculum, and are homologous to the forelimbs of tetrapods." [Wikipedia:Pectoral_fin#Fins] comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. The Actinopterygii (ray finned fish) pectoral and pelvic fins aren't homologous as fore- or hindlimbs to those of tetrapods, whereas those of the Sarcopterygii (lobe finned fish) are in fact homologous. xref: BTO:0004653 xref: SCTID:416982006 xref: TAO:0001161 xref: ZFA:0001161 is_a: UBERON:0002534 ! pectoral/pelvic fin is_a: UBERON:0004710 ! limb/fin of anterior region of body relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0000152 name: pelvic fin namespace: uberon def: "The paired pelvic or ventral fins are located ventrally below the pectoral fins. They are homologous to the hindlimbs of tetrapods. The pelvic fin assists the fish in going up or down through the water, turning sharply, and stopping quickly." [Wikipedia:Pectoral_fin#Fins] comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. xref: BTO:0004651 xref: EFO:0003644 xref: TAO:0001184 xref: ZFA:0001184 is_a: UBERON:0002534 ! pectoral/pelvic fin is_a: UBERON:0004709 ! limb/fin of posterior region of body relationship: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0000153 name: anterior region of body namespace: uberon is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000154 name: posterior region of body namespace: uberon is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000155 name: theca cell layer namespace: uberon def: "A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase." [Wikipedia:Theca_of_follicle] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "layer of theca cells" EXACT [] synonym: "theca cell layer of ovarian follicle" EXACT [] synonym: "theca folliculi" RELATED [] synonym: "theca of follicle" EXACT [] synonym: "thecal cell layer" EXACT [ZFA:0001113] xref: BTO:0002853 xref: EFO:0003629 xref: FMA:18656 xref: TAO:0001113 xref: ZFA:0001113 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000156 name: theca externa namespace: uberon alt_id: UBERON:0005182 def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa] synonym: "external coat of theca folliculi" RELATED [BTO:0002852] synonym: "ovary theca externa" EXACT [MA:0001713] synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657] synonym: "tunica externa of theca folliculi" EXACT [FMA:18657] synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852] xref: BTO:0002852 xref: FMA:18657 xref: MA:0001713 xref: SCTID:258767003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Mature_Graffian_follicle.jpg/200px-Mature_Graffian_follicle.jpg is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000155 ! theca cell layer [Term] id: UBERON:0000157 name: theca interna namespace: uberon alt_id: UBERON:0005183 def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna] synonym: "internal coat of capsule of graafian follicle" RELATED [BTO:0002851] synonym: "ovary theca interna" EXACT [MA:0001714] synonym: "theca interna (folliculus ovaricus tertiarius)" EXACT [FMA:18658] synonym: "tunica interna of theca folliculi" EXACT [FMA:18658] synonym: "tunica interna thecae folliculi" RELATED [BTO:0002851] xref: BTO:0002851 xref: FMA:18658 xref: MA:0001714 xref: SCTID:258869006 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000155 ! theca cell layer [Term] id: UBERON:0000158 name: membranous layer namespace: uberon synonym: "membranous organ component" EXACT [FMA:82500] xref: FMA:82500 is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0000159 name: anal canal namespace: uberon def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [Wikipedia:Anal_canal] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adult alimentary canal" RELATED [] synonym: "anal canal" EXACT [] synonym: "anal canal viewed anatomically" EXACT [] synonym: "anal pad" RELATED [] synonym: "anatomical anal canal" EXACT [] synonym: "anus" RELATED [] synonym: "canalis analis" RELATED [BTO:0001978] synonym: "cloaca" RELATED [] synonym: "cloacal chamber" RELATED [] synonym: "mesenteron" RELATED [] synonym: "pars analis recti" RELATED [BTO:0001978] xref: BTO:0001978 xref: EMAPA:18256 xref: FMA:15703 xref: MA:0000330 xref: SCTID:245438008 xref: TGMA:0001022 xref: galen:AnalCanal xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray1078.png/200px-Gray1078.png xref: ncithesaurus:Anal_Canal is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001353 ! anal region relationship: part_of UBERON:0006866 ! terminal part of digestive tract [Term] id: UBERON:0000160 name: intestine namespace: uberon alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338 def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine] comment: MA also has a class MA:0001524 bowel, not clear how this is different subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bowel" EXACT [] xref: AAO:0000246 xref: ANISEED:1235303 xref: BTO:0000648 xref: EFO:0000834 xref: EV:0100071 xref: FMA:7199 xref: GAID:295 xref: MA:0000328 xref: MA:0001524 xref: MESH:A.03.492.411 xref: MIAA:0000043 xref: SCTID:256876008 xref: TAO:0001338 xref: VHOG:0000056 xref: WBbt:0005772 xref: XAO:0000129 xref: ZFA:0001338 xref: galen:Intestine xref: ncithesaurus:Intestine is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005172 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! abdomen organ relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! gastrointestinal system relationship: part_of UBERON:0002075 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! viscus [Term] id: UBERON:0000161 name: orifice namespace: uberon def: "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724] comment: in FMA, this is an anatomical conduit *space*, rather than anatomical conduit subset: upper_ontology_conflict ! Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision. synonym: "anatomical orifice" EXACT [FMA:3724] synonym: "anatomical ostium" EXACT [FMA:3724] synonym: "hilum" NARROW [] xref: FMA:3724 xref: SCTID:91837002 is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000162 name: cloaca namespace: uberon def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP] synonym: "cloacal chamber" RELATED [] synonym: "vent" RELATED [] xref: AAO:0000095 xref: GAID:1206 xref: MESH:A.13.223 xref: SCTID:362857006 xref: VHOG:0001186 xref: WBbt:0005774 xref: XAO:0000244 xref: ZFA:0000330 xref: ncithesaurus:Cloaca is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0004122 ! genitourinary system relationship: part_of UBERON:0002533 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! tail bud [Term] id: UBERON:0000163 name: embryonic cloaca namespace: uberon def: "Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)] comment: compare UBERON:0000162 cloaca synonym: "cloaca" RELATED SENSU [] xref: EHDAA2:0000256 xref: EHDAA:4895 xref: EMAPA:27573 xref: EMAPA:27638 is_a: UBERON:0000162 ! cloaca is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0000164 name: primitive urogenital sinus namespace: uberon def: "Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Urogenital_sinus] comment: Note that the term \"urogenital sinus\" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP] synonym: "UGS" EXACT [MP:0010116] synonym: "fetal UGS" EXACT [PMID:18977204] synonym: "urogenital sinus" EXACT [MP:0010116] xref: EHDAA2:0004060 xref: EHDAA:5029 xref: EHDAA:5919 xref: EMAPA:17211 xref: EMAPA:17379 xref: SCTID:50961009 xref: VHOG:0000414 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png xref: ncithesaurus:Urogenital_Sinus is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000163 ! embryonic cloaca relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0000165 name: mouth namespace: uberon def: "First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth] comment: TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adult mouth" EXACT [] synonym: "cavitas oris" RELATED [BTO:0001090] synonym: "cavum oris" RELATED [BTO:0001090] synonym: "mouth cavity" RELATED [BTO:0001090] synonym: "oral vestibule" RELATED [BTO:0001090] synonym: "regio oralis" EXACT [FMA:49184, FMA:TA] synonym: "rima oris" RELATED [BTO:0001090] synonym: "stoma" RELATED [] synonym: "vestibule of mouth" RELATED [BTO:0001090] synonym: "vestibulum oris" RELATED [BTO:0001090] xref: AAO:0010355 xref: BTO:0001090 xref: EFO:0000825 xref: FBbt:00003126 xref: FMA:49184 xref: GAID:75 xref: MA:0002474 xref: MAT:0000038 xref: MESH:A.01.456.505.631 xref: MIAA:0000038 xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA xref: TADS:0000040 xref: TAO:0000547 xref: TGMA:0000131 xref: VHOG:0000812 xref: XAO:0003029 xref: ZFA:0000547 xref: galen:Mouth xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0003143 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! pupa relationship: part_of UBERON:0004089 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! midface [Term] id: UBERON:0000166 name: oral opening namespace: uberon def: "The opening of the head through which food passes into the body." [NLM:mouth] comment: note MA includes as parts of 'oral region' the tongue, tonsils, etc, so an equivalence to the oral opening itself may not be appropriate. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adult mouth" RELATED [] synonym: "mouth" RELATED [] synonym: "oral fissure" EXACT [FMA:59806] synonym: "oral orifice" EXACT [FMA:59806] synonym: "oral part of face" EXACT [] synonym: "oral region" EXACT [] synonym: "orofacial cavity" RELATED [] synonym: "subdivision of mouth" EXACT [] xref: BTO:0004698 xref: EHDAA2:0001326 xref: EHDAA:542 xref: EMAPA:16262 xref: FMA:59806 xref: MA:0000341 xref: TAO:0000590 xref: TGMA:0000131 xref: VHOG:0000280 xref: ZFA:0000590 is_a: UBERON:0000161 ! orifice is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0005409 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system [Term] id: UBERON:0000167 name: oral cavity namespace: uberon subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "buccal cavity" EXACT [FMA:20292] synonym: "cavity of mouth" EXACT [] xref: AAO:0000053 xref: AAO:0000960 xref: EFO:0001975 xref: EHDAA2:0001324 xref: EHDAA:6970 xref: EMAPA:17411 xref: EV:0100057 xref: FMA:20292 xref: HAO:0000669 xref: SCTID:181220002 xref: TAO:0001027 xref: TGMA:0000102 xref: VHOG:0000188 xref: WBbt:0005255 xref: XAO:0000126 xref: ZFA:0001027 xref: ncithesaurus:Oral_Cavity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0000166 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! oral opening [Term] id: UBERON:0000168 name: segment of colon namespace: uberon def: "An organ segment that is part of a colon [Obol]." [OBOL:automatic] xref: FMA:222905 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0000170 name: pair of lungs namespace: uberon synonym: "lungs" EXACT [] synonym: "lungs pair" EXACT [] synonym: "pulmones" EXACT [FMA:68877, FMA:TA] synonym: "set of lungs" EXACT [] xref: BTO:0000763 xref: EFO:0000934 xref: FMA:68877 xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA xref: ncithesaurus:Lung is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0000171 name: respiration organ namespace: uberon def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585] subset: functional_classification ! functional_classification subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic] synonym: "breathing organ" EXACT [] synonym: "gas exchange organ" RELATED [] synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "organ of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory organ" EXACT [] synonym: "respiratory system organ" EXACT [OBOL:automatic] xref: EMAPA:17607 xref: SCTID:272626006 xref: SPD:0000428 xref: TGMA:0001247 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000172 name: vomit namespace: uberon def: "Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose." [ENVO:00000338] xref: ENVO:00000338 xref: OpenCyc:Mx4rvViQTJwpEbGdrcN5Y29ycA xref: galen:Vomitus xref: ncithesaurus:Vomitus is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000173 name: amniotic fluid namespace: uberon def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided." [ENVO:02000021] synonym: "acqua amnii" RELATED [BTO:0000068] synonym: "liquor amnii" RELATED [BTO:0000068] xref: BTO:0000068 xref: ENVO:02000021 xref: EV:0100123 xref: GAID:1155 xref: MA:0002893 xref: MESH:A.12.098 xref: VHOG:0001267 xref: ncithesaurus:Amniotic_Fluid is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000174 name: excreta namespace: uberon alt_id: UBERON:0000324 alt_id: UBERON:0007550 alt_id: UBERON:BTO_0000491-FMA_9674 def: "Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body." [ENVO:02000022] synonym: "excretion" EXACT [BTO:0000491] synonym: "waste substance" EXACT [AEO:0000184] xref: AEO:0000184 xref: BTO:0000491 xref: EHDAA2:0003184 xref: ENVO:02000022 xref: FMA:9674 xref: galen:Excretion is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000175 name: pleural effusion namespace: uberon def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] comment: cede to MPATH? Note the ncit class is under finding. xref: ENVO:02000033 xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw xref: ncithesaurus:Pleural_Effusion is_a: UBERON:0001087 ! pleural fluid [Term] id: UBERON:0000176 name: oronasal secretion namespace: uberon def: "Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035] xref: ENVO:02000035 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000177 name: pus namespace: uberon def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038] comment: AO notes: biospecimen in NCIT xref: ENVO:02000038 xref: OpenCyc:Mx4rvVjG6ZwpEbGdrcN5Y29ycA xref: galen:Pus xref: ncithesaurus:Pus is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000178 name: blood namespace: uberon def: "Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid)." [FMA:9670, Wikipedia:Blood] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "portion of blood" EXACT [] synonym: "vertebrate blood" EXACT [] synonym: "whole blood" RELATED [BTO:0000089] xref: AAO:0000046 xref: BTO:0000089 xref: EFO:0000296 xref: EHDAA2:0000176 xref: EHDAA:418 xref: EMAPA:16332 xref: ENVO:02000027 xref: EV:0100047 xref: FMA:9670 xref: GAID:965 xref: MA:0000059 xref: MESH:A.12.207.152 xref: MIAA:0000315 xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA xref: TAO:0000007 xref: VHOG:0000224 xref: XAO:0000124 xref: ZFA:0000007 xref: galen:Blood xref: ncithesaurus:Blood is_a: UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0000179 name: haemolymphatic fluid namespace: uberon def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." [] synonym: "blood or blood analog" RELATED [] synonym: "haematological system portion of organism substance" EXACT [OBOL:automatic] synonym: "haemopoietic system portion of organism substance" EXACT [OBOL:automatic] synonym: "hematopoietic system portion of organism substance" EXACT [OBOL:automatic] synonym: "organa haemopoietica portion of organism substance" EXACT [OBOL:automatic] synonym: "portion of organism substance of haematological system" EXACT [OBOL:automatic] synonym: "portion of organism substance of haemopoietic system" EXACT [OBOL:automatic] synonym: "portion of organism substance of hematopoietic system" EXACT [OBOL:automatic] synonym: "portion of organism substance of organa haemopoietica" EXACT [OBOL:automatic] is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000180 name: lateral lumbar region of abdomen namespace: uberon def: "a region of the posterior torso (lower back) beneath the ribs and above the ilium." [Wikipedia:Abdomen#9-region_scheme, Wikipedia:Flank] synonym: "flank" EXACT [FMA:14603] synonym: "lateral region" EXACT [FMA:14603] synonym: "lateral region of abdomen" EXACT [FMA:14603] synonym: "latus" EXACT [FMA:14603] synonym: "regio lateralis" EXACT [FMA:14603] xref: FMA:14603 xref: SCTID:243329008 xref: galen:Flank xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1220.png is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0000199 name: neck of radius namespace: uberon def: "the narrow part of the shaft of the radius just below the head." [http://www.medilexicon.com/medicaldictionary.php?t=58913] synonym: "radial neck" EXACT [FMA:23479] xref: FMA:23479 xref: SCTID:181942005 xref: galen:NeckOfRadius is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004413 ! proximal epiphysis of radius [Term] id: UBERON:0000200 name: gyrus namespace: uberon def: "A ridge, generally surrounded by one or more sulci." [Wikipedia:Gyrus] synonym: "cerebral gyrus" EXACT [BTO:0002495] synonym: "gyri" RELATED PLURAL [BTO:0002495] synonym: "gyri of cerebrum" RELATED PLURAL [BTO:0002495] synonym: "gyrus of cerebrum" RELATED [BTO:0002495] synonym: "gyrus of neuraxis" EXACT [FMA:83874] xref: BTO:0002495 xref: FMA:83874 xref: SCTID:279165009 xref: ncithesaurus:Cerebral_Gyrus is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0000201 name: endothelial blood brain barrier namespace: uberon def: "A blood brain barrier that is composed of endothelial cells." [UBERON:cjm] xref: NIF_Subcellular:nlx_subcell_100205 is_a: UBERON:0000120 ! blood brain barrier [Term] id: UBERON:0000202 name: glial blood brain barrier namespace: uberon def: "A blood brain barrier composed of glial cells." [UBERON:cjm] xref: FBbt:00007091 is_a: UBERON:0000120 ! blood brain barrier [Term] id: UBERON:0000203 name: pallium namespace: uberon def: "Roof region of the telencephalon[GO]. In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus." [GO:0021543, Wikipedia:Pallium_(neuroanatomy)] comment: Editor note: check comparative anatomy subset: developmental_classification ! developmental_classification xref: SCTID:369224000 xref: ZFA:0007007 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0000204 name: ventral telencephalon namespace: uberon def: "Base region of the telencephalon." [GO:0021544, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, GO_REF:0000021, PMID:12626695] comment: note that the term subpallium sometimes refers specifically to the avian structure subset: developmental_classification ! developmental_classification synonym: "area ventralis telencephali" EXACT [ZFA:0000304] synonym: "subpallium" NARROW [BTO:0003401, GO:0021544, ZFA:0000304] xref: BTO:0003401 xref: EFO:0003522 xref: ZFA:0000304 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0000205 name: echinoderm gill namespace: uberon def: "Respiration in the Echinodermata (includes starfish and sea urchins) is carried out using a very primitive version of gills called papulli. These are thin protuberances on the surface of the body containing diverticula of the water vascular system." [] synonym: "papulli" EXACT [] is_a: UBERON:0002535 ! gill [Term] id: UBERON:0000206 name: pharyngeal gill namespace: uberon def: "Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury." [Wikipedia:Gill#Vertebrate_gills] xref: ANISEED:1235300 is_a: UBERON:0002535 ! gill [Term] id: UBERON:0000207 name: compound eye corneal lens namespace: uberon def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] synonym: "acellular lens" RELATED [] xref: FBbt:00004199 xref: TADS:0000304 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005389 ! transparent eye structure relationship: part_of UBERON:0000018 ! compound eye relationship: part_of UBERON:0000971 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ommatidium disjoint_from: UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0000208 name: cellular lens namespace: uberon is_obsolete: true replaced_by: UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0000209 name: tetrapod frontal bone namespace: uberon alt_id: UBERON:FMA_9613-MA_0001469-ZFA_0000486 def: "In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities." [Wikipedia:Frontal_bone] comment: The parietal bone in teleost fish is the homolog of the frontal bone in tetrapods. In the mouse the parietal originates from cephalic paraxial mesoderm (Jiang 2000; Morriss-Kay 2001), whereas in the chicken it is traced back to either mesodermal (Noden 1978) or neural crest (Couly 1992, 1993). synonym: "frontal" NARROW [AAO:0000206] synonym: "frontal bone" NARROW [FMA:52734, MA:0001466] xref: AAO:0000206 xref: EMAPA:19016 xref: FMA:52734 xref: GAID:226 xref: MA:0001466 xref: MESH:A.02.835.232.781.375 xref: VHOG:0001324 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray136.png/200px-Gray136.png xref: ncithesaurus:Frontal_Bone is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004766 ! cranial bone is_a: UBERON:0003465 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! chondrocranium bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0000210 name: tetrapod parietal bone namespace: uberon alt_id: UBERON:FMA_52734-MA_0001466-ZFA_0000514 def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [Wikipedia:Parietal_bone, ZFA:0000514] comment: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods synonym: "frontal bone" NARROW [TAO:0000514] synonym: "os parietale" RELATED [Wikipedia:Parietal_bone] synonym: "parietal" NARROW SENSU [AAO:0000390] synonym: "parietal bone" NARROW SENSU [FMA:9613] synonym: "teleost frontal bone" NARROW [TAO:0000514] xref: AAO:0000390 xref: EMAPA:18715 xref: FMA:9613 xref: GAID:229 xref: MA:0001469 xref: MESH:A.02.835.232.781.651 xref: VHOG:0001324 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray132.png/200px-Gray132.png xref: ncithesaurus:Parietal_Bone is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004766 ! cranial bone is_a: UBERON:0003465 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! chondrocranium bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0000211 name: ligament namespace: uberon def: "Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA]." [FMA:21496, Wikipedia:Ligament] comment: Note this groups both skeletal and non-skeletal ligaments. What is called a \"ligament\" in many AOs is actually a skeletal ligament subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ligament organ" EXACT [FMA:21496] xref: EFO:0001966 xref: FMA:21496 xref: MA:0000113 xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA xref: SCTID:182358004 xref: VHOG:0001272 xref: XAO:0004031 xref: galen:Ligament xref: ncithesaurus:Ligament is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0007846 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dense regular collagenous tissue [Term] id: UBERON:0000212 name: toilet claw namespace: uberon def: "specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw] is_a: UBERON:0001705 ! nail [Term] id: UBERON:0000218 name: vertebral arch of axis namespace: uberon synonym: "vertebral foramen of second cervical vertebra" EXACT [] xref: FMA:24053 is_a: UBERON:0008434 ! cervical vertebral arch [Term] id: UBERON:0000219 name: vertebral foramen of atlas namespace: uberon def: "." [Wikipedia:Atlas_(anatomy)#Vertebral_foramen] synonym: "vertebral foramen of first cervical vertebra" EXACT [] xref: FMA:24293 xref: SCTID:281228008 is_a: UBERON:0008429 ! cervical vertebral foramen [Term] id: UBERON:0000220 name: atlanto-occipital joint namespace: uberon def: "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoC6ccipital membrane; Anterior atlantoC6ccipital membrane; Lateral atlantoC6ccipital" [Wikipedia:Atlanto-occipital_joint] synonym: "articulatio atlanto-occipitalis" EXACT [FMA:24939] synonym: "craniovertebral joint" EXACT [FMA:24939] xref: FMA:24939 xref: SCTID:361831006 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0000221 name: supraauricular point namespace: uberon def: "a craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620] synonym: "supra-auricular part of head" EXACT [FMA:224222] xref: FMA:224222 is_a: UBERON:0006983 ! anatomical point [Term] id: UBERON:0000301 name: amniotic cavity namespace: uberon alt_id: UBERON:BTO_0000025-FMA_63941 def: "The amniotic cavity is formed by the fusion of the parts of the amniotic fold, which first makes its appearance at the cephalic extremity, and subsequently at the caudal end and sides of the embryo. As the amniotic fold rises and fuses over the dorsal aspect of the embryo, the amniotic cavity is formed. [WP,unvetted]." [Wikipedia:Amniotic_cavity] xref: BTO:0000025 xref: EHDAA2:0000119 xref: EHDAA:83 xref: EMAPA:16079 xref: FMA:63941 xref: SCTID:280366002 xref: VHOG:0000855 xref: ncithesaurus:Amniotic_Cavity is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000303 name: adductor longus namespace: uberon alt_id: UBERON:BTO_0000029-FMA_22441 def: "The adductor longus muscle is a muscle of the human body. It is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP]." [Wikipedia:Adductor_longus_muscle] synonym: "adductor longus muscle" EXACT [] synonym: "long adductor muscle" RELATED [BTO:0000029] synonym: "musculus adductor longus" RELATED [BTO:0000029] xref: BTO:0000029 xref: FMA:22441 xref: SCTID:181686003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG is_a: UBERON:0000952 ! adductor muscle is_a: UBERON:0004252 ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0000304 name: tendon sheath namespace: uberon alt_id: UBERON:BTO_0000051-FMA_76715 def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [Wikipedia:Tendon_sheath] comment: TODO: add layer relations xref: BTO:0000051 xref: FMA:76715 xref: SCTID:361885006 is_a: UBERON:0002018 ! synovial membrane [Term] id: UBERON:0000305 name: amnion namespace: uberon alt_id: UBERON:BTO_0000065-FMA_80223 def: "A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called bAmniotab; but not in amphibians and fish (Ichthyopsida), which are consequently termed bAnamniotab. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion] xref: BTO:0000065 xref: EHDAA2:0000116 xref: EHDAA:136 xref: EMAPA:16109 xref: EV:0100122 xref: FMA:80223 xref: GAID:1298 xref: MESH:A.16.254.403.277 xref: SCTID:181457005 xref: VHOG:0000721 xref: ncithesaurus:Amnion is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane [Term] id: UBERON:0000307 name: blastula namespace: uberon alt_id: UBERON:0007011 alt_id: UBERON:BTO_0000128-FMA_83041 def: "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] comment: TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula subset: inconsistent_with_fma ! classes that have some inconsistency with FMA synonym: "blastosphere" RELATED [Wikipedia:Blastula] synonym: "blastula embryo" EXACT [BILA:0000059] xref: BILA:0000059 xref: BTO:0000128 xref: GAID:1294 xref: MESH:A.16.254.270.274 xref: OGEM:000006 xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png is_a: UBERON:0000922 ! embryo [Term] id: UBERON:0000309 name: body wall namespace: uberon alt_id: UBERON:BTO_0000139-FMA_10427 def: "the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385] synonym: "Koerperwand" RELATED [BTO:0000139] synonym: "trunk wall" EXACT [FMA:10427] synonym: "wall of trunk" EXACT [FMA:10427] xref: BTO:0000139 xref: FMA:10427 xref: SCTID:281483004 xref: galen:BodyWall is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0000310 name: breast namespace: uberon alt_id: UBERON:BTO_0000149-FMA_9601 def: "The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primatebs body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast] synonym: "mammary part of chest" EXACT [FMA:9601] synonym: "mammary region" EXACT [FMA:9601] xref: BTO:0000149 xref: EV:0100124 xref: FMA:9601 xref: GAID:33 xref: MESH:A.01.236 xref: OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA xref: SCTID:181131000 xref: galen:Breast xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Closeup_of_female_breast.jpg/200px-Closeup_of_female_breast.jpg xref: ncithesaurus:Breast is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0000311 name: extensor muscle namespace: uberon alt_id: UBERON:BTO_0000151-FMA_74561 def: "A muscle that, upon contraction, tends to straighten a joint or limb. The antagonist of a flexor muscle[BTO]. Any of the muscles that increase the angle between members of a limb, as by straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus (bone of the upper arm) along the back of the forearm to the metacarpal bones at the back of the hand[Britannica]" [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle] synonym: "extensor" RELATED [] xref: BTO:0000151 xref: FMA:75000 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0000312 name: inner cambium layer of periosteum namespace: uberon alt_id: UBERON:BTO_0000170-FMA_234358 synonym: "cambial layer" EXACT [FMA:234358] synonym: "cambial layer of periosteum" EXACT [FMA:234358] synonym: "cambium" EXACT [] synonym: "cambium layer of periosteum" EXACT [FMA:234358] synonym: "inner cambial layer of periosteum" EXACT [FMA:234358] synonym: "osteogenic layer of periosteum" EXACT [Wikipedia:Periosteum] xref: FMA:234358 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0000313 name: tibial cartilage namespace: uberon alt_id: UBERON:BTO_0000207-FMA_33923 def: "A cartilage that is part of a tibia [Obol]." [OBOL:automatic] synonym: "cartilage of tibia" EXACT [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004270 ! lower leg connective tissue is_a: UBERON:0007391 ! hind limb/fin cartilage [Term] id: UBERON:0000314 name: cecum mucosa namespace: uberon alt_id: UBERON:BTO_0000213-FMA_14998 def: "A mucosa that is part of a cecum [Obol]." [OBOL:automatic] synonym: "Cecal mucosa" EXACT [FMA:14998] synonym: "caecum mucosa" EXACT [OBOL:automatic] synonym: "caecum mucosa of organ" EXACT [OBOL:automatic] synonym: "caecum mucous membrane" EXACT [OBOL:automatic] synonym: "caecum organ mucosa" EXACT [OBOL:automatic] synonym: "cecum mucosa of organ" EXACT [OBOL:automatic] synonym: "cecum mucous membrane" EXACT [OBOL:automatic] synonym: "cecum organ mucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucosa of organ" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucous membrane" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of caecum" EXACT [OBOL:automatic] synonym: "mucosa of cecum" EXACT [OBOL:automatic] synonym: "mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of caecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of cecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "mucous membrane of caecum" EXACT [OBOL:automatic] synonym: "mucous membrane of cecum" EXACT [OBOL:automatic] synonym: "mucous membrane of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "organ mucosa of caecum" EXACT [OBOL:automatic] synonym: "organ mucosa of cecum" EXACT [OBOL:automatic] synonym: "organ mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] xref: BTO:0000213 xref: FMA:14998 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000317 ! colonic mucosa [Term] id: UBERON:0000315 name: subarachnoid space namespace: uberon alt_id: UBERON:BTO_0000230-FMA_83716 def: "the space between the arachnoid and dura mater that is traversed by fibrous trabeculae and contains cerebrospinal fluid." [MP:0009027, Wikipedia:Subarachnoid_space] synonym: "cavitas subarachnoidea" RELATED [BTO:0000230] synonym: "spatium leptomeningeum" RELATED [BTO:0000230] synonym: "spatium subarachnoideum" RELATED [BTO:0000230] synonym: "subarachnoid cavity" RELATED [BTO:0000230] xref: BTO:0000230 xref: EMAPA:18211 xref: EMAPA:19053 xref: EMAPA:19054 xref: EMAPA:19055 xref: EMAPA:25079 xref: FMA:83716 xref: GAID:689 xref: MESH:A.08.186.566.166.686 xref: SCTID:362311001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray769.png/200px-Gray769.png is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000316 name: cervical mucus namespace: uberon alt_id: UBERON:BTO_0000242-FMA_83689 def: "Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [Wikipedia:Cervix#Cervical_mucus, Wikipedia:Mucus#Reproductive_system] synonym: "cervix mucus" EXACT [Obol:automatic] xref: BTO:0000242 xref: FMA:83689 xref: MESH:A.12.200.503.339 is_a: UBERON:0000912 ! mucus [Term] id: UBERON:0000317 name: colonic mucosa namespace: uberon alt_id: UBERON:0003347 alt_id: UBERON:0004981 alt_id: UBERON:BTO_0000271-FMA_14984 def: "A mucosa that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon mucosa" EXACT [FMA:14984] synonym: "colon mucosa of organ" EXACT [OBOL:automatic] synonym: "colon mucous membrane" EXACT [OBOL:automatic] synonym: "colon organ mucosa" EXACT [OBOL:automatic] synonym: "colonic mucous membrane" EXACT [FMA:14984] synonym: "large bowel mucosa" EXACT [OBOL:automatic] synonym: "large bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "large bowel mucous membrane" EXACT [OBOL:automatic] synonym: "large bowel organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of colon" EXACT [FMA:14984] synonym: "mucosa of large bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of colon" EXACT [OBOL:automatic] synonym: "mucosa of organ of large bowel" EXACT [OBOL:automatic] synonym: "mucosa of segment of colon" EXACT [FMA:85388] synonym: "mucous membrane of colon" EXACT [OBOL:automatic] synonym: "mucous membrane of large bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of colon" EXACT [OBOL:automatic] synonym: "organ mucosa of large bowel" EXACT [OBOL:automatic] xref: BTO:0000271 xref: EFO:0003038 xref: EMAPA:27375 xref: FMA:14984 xref: FMA:85388 xref: SCTID:362157008 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0000319 name: cytotrophoblast namespace: uberon alt_id: UBERON:BTO_0000322-FMA_83039 def: "The cytotrophoblast (or layer of Langhans) is the inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [Wikipedia:Cytotrophoblast] synonym: "Langhans' layer" RELATED [BTO:0000322] synonym: "cellular trophoblast" EXACT [FMA:83039] synonym: "cytotrophoblastic cell" RELATED [FMA:83039] synonym: "cytotrophoblastic cell layer" EXACT [UBERON:cjm] xref: BTO:0000322 xref: EHDAA:127 xref: EHDAA:152 xref: EHDAA:89 xref: EMAPA:16067 xref: FMA:83039 xref: SCTID:308841008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray36.png/200px-Gray36.png xref: ncithesaurus:Cytotrophoblast is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 ! trophoblast [Term] id: UBERON:0000320 name: duodenal mucosa namespace: uberon alt_id: UBERON:0003348 alt_id: UBERON:BTO_0000367-FMA_14942 def: "A mucosa that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "Doudenal mucosa" EXACT [FMA:14942] synonym: "Duodenal mucous membrane" EXACT [FMA:14942] synonym: "duodenum mucosa" RELATED [BTO:0000367] synonym: "mucosa of duodenum" EXACT [OBOL:automatic] synonym: "mucous membrane of duodenum" EXACT [OBOL:automatic] xref: BTO:0000367 xref: EMAPA:27235 xref: FMA:14942 xref: SCTID:362146003 is_a: UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0000322 name: cerebral lobe namespace: uberon alt_id: UBERON:BTO_0000445-FMA_77800 comment: set/singular synonym: "Cerebral lobes" EXACT [FMA:77800] synonym: "Cerebral lobes set" EXACT [FMA:77800] synonym: "lobi cerebri" EXACT [FMA:77800, FMA:TA] xref: BTO:0000445 xref: FMA:77800 xref: SCTID:272632001 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0000323 name: late embryo namespace: uberon alt_id: UBERON:BTO_0000449-FMA_63919 comment: TODO - check fetus/embryo. WP: An embryo is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus. synonym: "embryo late growth stage" RELATED [BTO:0000449] synonym: "embryo late stage" RELATED [BTO:0000449] synonym: "fetus" NARROW [BTO:0000449] xref: BTO:0000449 xref: EFO:0001323 xref: FMA:63919 xref: GAID:552 xref: MESH:A.16.378 xref: OpenCyc:Mx4rvZfC2ZwpEbGdrcN5Y29ycA xref: SCTID:83418008 xref: ncithesaurus:Fetus is_a: UBERON:0000922 ! embryo [Term] id: UBERON:0000325 name: gastric gland namespace: uberon alt_id: UBERON:BTO_0000503-FMA_14919 def: "any of the branched tubules in the inner lining of the stomach that secrete gastric juice and protective mucus." [] subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0000503 xref: FMA:14919 is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003294 ! gland of foregut relationship: part_of UBERON:0006924 ! stomach glandular epithelium [Term] id: UBERON:0000326 name: pancreatic juice namespace: uberon alt_id: UBERON:BTO_0000504-FMA_62973 def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157] synonym: "succus pancreaticus" RELATED [BTO:0000504] xref: BTO:0000504 xref: FMA:62973 xref: GAID:1166 xref: MESH:A.12.200.567 is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0000328 name: gut wall namespace: uberon alt_id: UBERON:BTO_0000547-FMA_45653 synonym: "wall of gut" EXACT [FMA:45653] xref: BTO:0000547 xref: FMA:45653 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0000329 name: hair root namespace: uberon alt_id: UBERON:BTO_0000555-FMA_70730 def: "The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [BTO:0000555, Wikipedia:Hair_root] synonym: "root of hair" EXACT [FMA:70730] xref: BTO:0000555 xref: FMA:70730 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray944.png/200px-Gray944.png xref: ncithesaurus:Hair_Root is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001037 ! strand of hair [Term] id: UBERON:0000331 name: ileal mucosa namespace: uberon alt_id: UBERON:BTO_0000619-FMA_14956 def: "A mucosa that is part of a ileum [Obol]." [OBOL:automatic] synonym: "Ileal mucous membrane" EXACT [FMA:14956] synonym: "Ileum mucosa" EXACT [FMA:14956] synonym: "ileum mucosa" EXACT [OBOL:automatic] synonym: "ileum mucosa of organ" EXACT [OBOL:automatic] synonym: "ileum mucous membrane" EXACT [OBOL:automatic] synonym: "ileum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of ileum" EXACT [OBOL:automatic] synonym: "mucosa of organ of ileum" EXACT [OBOL:automatic] synonym: "mucous membrane of ileum" EXACT [OBOL:automatic] synonym: "organ mucosa of ileum" EXACT [OBOL:automatic] xref: BTO:0000619 xref: FMA:14956 xref: SCTID:85458007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0000332 name: yellow bone marrow namespace: uberon alt_id: UBERON:BTO_0000635-FMA_74596 synonym: "fat marrow" RELATED [BTO:0000635] synonym: "medulla ossium flava" RELATED [BTO:0000635] synonym: "yellow marrow" RELATED [BTO:0000635] xref: BTO:0000635 xref: FMA:74596 xref: SCTID:5023006 is_a: UBERON:0002371 ! bone marrow [Term] id: UBERON:0000333 name: intestinal gland namespace: uberon alt_id: UBERON:BTO_0000640-FMA_15052 def: "A gland that is part of a intestinal mucosa [Obol]." [OBOL:automatic] comment: TODO check UBERON:0001983 subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "Glandula intestinalis" EXACT [FMA:15052] synonym: "Lieberkuehn`s gland" RELATED [BTO:0000640] synonym: "bowel mucosa gland" EXACT [OBOL:automatic] synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic] synonym: "bowel mucous membrane gland" EXACT [OBOL:automatic] synonym: "bowel organ mucosa gland" EXACT [OBOL:automatic] synonym: "crypt of Lieberkuehn" RELATED [BTO:0000640] synonym: "gland of Lieberkuehn" RELATED [BTO:0000640] synonym: "gland of bowel mucosa" EXACT [OBOL:automatic] synonym: "gland of bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "gland of bowel mucous membrane" EXACT [OBOL:automatic] synonym: "gland of bowel organ mucosa" EXACT [OBOL:automatic] synonym: "gland of intestinal mucosa" EXACT [OBOL:automatic] synonym: "gland of intestine mucosa" EXACT [OBOL:automatic] synonym: "gland of intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "gland of intestine mucous membrane" EXACT [OBOL:automatic] synonym: "gland of intestine organ mucosa" EXACT [OBOL:automatic] synonym: "gland of mucosa of bowel" EXACT [OBOL:automatic] synonym: "gland of mucosa of intestine" EXACT [OBOL:automatic] synonym: "gland of mucosa of organ of bowel" EXACT [OBOL:automatic] synonym: "gland of mucosa of organ of intestine" EXACT [OBOL:automatic] synonym: "gland of mucous membrane of bowel" EXACT [OBOL:automatic] synonym: "gland of mucous membrane of intestine" EXACT [OBOL:automatic] synonym: "gland of organ mucosa of bowel" EXACT [OBOL:automatic] synonym: "gland of organ mucosa of intestine" EXACT [OBOL:automatic] synonym: "intestinal mucosa gland" EXACT [OBOL:automatic] synonym: "intestine mucosa gland" EXACT [OBOL:automatic] synonym: "intestine mucosa of organ gland" EXACT [OBOL:automatic] synonym: "intestine mucous membrane gland" EXACT [OBOL:automatic] synonym: "intestine organ mucosa gland" EXACT [OBOL:automatic] synonym: "mucosa of bowel gland" EXACT [OBOL:automatic] synonym: "mucosa of intestine gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of bowel gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestine gland" EXACT [OBOL:automatic] synonym: "mucous membrane of bowel gland" EXACT [OBOL:automatic] synonym: "mucous membrane of intestine gland" EXACT [OBOL:automatic] synonym: "organ mucosa of bowel gland" EXACT [OBOL:automatic] synonym: "organ mucosa of intestine gland" EXACT [OBOL:automatic] xref: BTO:0000640 xref: FMA:15052 xref: SCTID:266297002 is_a: UBERON:0002530 ! gland is_a: UBERON:0003408 ! gland of gut relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0000341 name: throat namespace: uberon alt_id: UBERON:BTO_0000828-FMA_228738 def: "In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [Wikipedia:Throat] xref: BTO:0000828 xref: FMA:228738 xref: OpenCyc:Mx4rwQtO_JwpEbGdrcN5Y29ycA xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Throat_Diagram.png/200px-Throat_Diagram.png xref: ncithesaurus:Throat is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0000344 name: mucosa namespace: uberon alt_id: UBERON:BTO_0000886-FMA_85355 def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [Wikipedia:Mucous_membrane] comment: Editor note: - check - mucosa vs region of mucosa. In FMA these are subtypes of Mucosa: Mucosa of gallbladder, tongue, .... The following are subtypes of Region of mucosa: Mucosa of zone of stomach, trachea, bronchus, dorsum of tongue.... Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately synonym: "mucosa of organ" EXACT [FMA:85355] synonym: "mucosa of organ part" EXACT [FMA:85358] synonym: "mucosal region" EXACT [FMA:85358] synonym: "mucous membrane" EXACT [FMA:85355] synonym: "organ mucosa" EXACT [FMA:85355] synonym: "region of mucosa" RELATED [FMA:85358] synonym: "tunica mucosa" RELATED [BTO:0000886] xref: AEO:0000199 xref: BTO:0000886 xref: EHDAA2:0003234 xref: EV:0100382 xref: FMA:85355 xref: FMA:85358 xref: GAID:297 xref: MESH:A.10.615.550 xref: OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA xref: SCTID:361693009 xref: galen:Mucosa xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png xref: ncithesaurus:Mucosa is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0000345 name: myelin namespace: uberon alt_id: UBERON:BTO_0000894-FMA_62977 def: "a dielectric (electrically insulating) material that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath." [Wikipedia:Myelin] comment: editor note: cede to other ontology. Retired in ncit xref: BTO:0000894 xref: FMA:62977 xref: ncithesaurus:Myelin is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000346 name: myelin membrane namespace: uberon alt_id: UBERON:BTO_0000895-FMA_73417 comment: BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell synonym: "myelinated plasma membrane of Schwann cell" EXACT [FMA:73417] xref: BTO:0000895 xref: FMA:73417 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0000347 name: myelin sheath namespace: uberon alt_id: UBERON:BTO_0000900-FMA_62983 def: "the insulating envelope that surrounds nerve fibers or axons." [MP:0003871] synonym: "medullary sheath" RELATED [BTO:0000900] xref: BTO:0000900 xref: FMA:62983 xref: GAID:731 xref: GO:0043209 xref: MESH:A.08.637.600.500 xref: ncithesaurus:Myelin_Sheath is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0000348 name: ophthalmic nerve namespace: uberon alt_id: UBERON:BTO_0000926-FMA_52621 def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [MP:0009798] synonym: "First division of fifth cranial nerve" EXACT [FMA:52621] synonym: "First division of trigeminal nerve" EXACT [FMA:52621] synonym: "Nervus ophthalmicus (V1)" EXACT [FMA:52621] synonym: "Nervus ophthalmicus (Va)" EXACT [FMA:52621] synonym: "Ophthalmic division [V1]" EXACT [FMA:52621] synonym: "Ophthalmic division [Va]" EXACT [FMA:52621] synonym: "Ophthalmic division of fifth cranial nerve" EXACT [FMA:52621] synonym: "Ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621] synonym: "Ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621] synonym: "Ophthalmic nerve [V1]" EXACT [FMA:52621] synonym: "Ophthalmic nerve [Va]" EXACT [FMA:52621] synonym: "nervus ophthalmicus [v1]" EXACT [FMA:52621, FMA:TA] synonym: "nervus ophthalmicus [va]" EXACT [FMA:52621, FMA:TA] synonym: "ophthalmic division" RELATED [BTO:0000926] synonym: "trigeminal V nerve ophthalmic division" EXACT [MA:0001104] xref: BTO:0000926 xref: EHDAA2:0002088 xref: EHDAA:3744 xref: EMAPA:17800 xref: FMA:52621 xref: GAID:837 xref: MA:0001104 xref: MESH:A.08.800.800.120.760.650 xref: OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA xref: SCTID:280210000 xref: VHOG:0001349 xref: ncithesaurus:Ophthalmic_Nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0000349 name: limbic system namespace: uberon alt_id: UBERON:BTO_0000928-FMA_242000 def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system] comment: obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity. xref: BTO:0000928 xref: FMA:242000 xref: GAID:615 xref: MESH:A.08.186.211.577 xref: OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA xref: SCTID:361342009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Brain_limbicsystem.jpg/200px-Brain_limbicsystem.jpg is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0000351 name: nuchal ligament namespace: uberon alt_id: UBERON:BTO_0000952-FMA_13427 synonym: "Ligament of neck" EXACT [FMA:13427] synonym: "ligamentum nuchae" EXACT [FMA:13427] xref: BTO:0000952 xref: EMAPA:19207 xref: FMA:13427 xref: SCTID:166962007 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0000353 name: parenchyma namespace: uberon alt_id: UBERON:BTO_0000999-FMA_45732 def: "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]." [Wikipedia:Parenchyma] xref: EHDAA:3015 xref: EHDAA:3905 xref: EHDAA:3999 xref: EHDAA:4005 xref: EHDAA:6899 xref: EHDAA:6903 xref: EHDAA:6994 xref: EHDAA:8086 xref: EHDAA:9182 xref: EHDAA:9190 xref: EHDAA:9196 xref: EHDAA:9202 xref: FMA:45732 xref: ncithesaurus:Parenchyma is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000355 name: pharyngeal mucosa namespace: uberon alt_id: UBERON:0003344 alt_id: UBERON:BTO_0001047-FMA_55031 def: "A mucosa that is part of a pharynx [Obol]." [OBOL:automatic] synonym: "Mucous membrane of pharynx" EXACT [FMA:55031] synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047] synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic] synonym: "pharynx mucosa" EXACT [OBOL:automatic] synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa pharyngea" EXACT [FMA:55031, FMA:TA] xref: BTO:0001047 xref: EMAPA:26957 xref: EMAPA:26965 xref: FMA:55031 xref: SCTID:362121003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004785 ! respiratory system mucosa [Term] id: UBERON:0000358 name: blastocyst namespace: uberon alt_id: UBERON:BTO_0001099-FMA_83041 def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst] synonym: "blastula" RELATED [FMA:83041] xref: BTO:0001099 xref: EFO:0000295 xref: EV:0100394 xref: FMA:83041 xref: GAID:1153 xref: MESH:A.16.254.085 xref: OGEM:000006 xref: SCTID:308837009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png xref: ncithesaurus:Blastocyst is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000307 ! blastula [Term] id: UBERON:0000359 name: preputial gland namespace: uberon alt_id: UBERON:BTO_0001111-FMA_71652 def: "An exocrine gland that are located in front of the genitals of some mammals (including mice) and produce pheromones[WP]." [Wikipedia:Preputial_gland] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "glandulae preputiales" EXACT [FMA:71652, FMA:TA] synonym: "preputial glands" EXACT [FMA:71652] synonym: "preputial glands set" EXACT [FMA:71652] xref: FMA:71652 xref: SCTID:278916008 xref: ncithesaurus:Prepucial_Gland_MMHCC is_a: UBERON:0001821 ! sebaceous gland [Term] id: UBERON:0000360 name: rectal gland namespace: uberon alt_id: UBERON:BTO_0001157-FMA_15724 is_obsolete: true consider: UBERON:0004757 ! rectal gland consider: UBERON:0004758 ! salt gland consider: UBERON:0004759 ! salt gland of cranial region consider: UBERON:0004760 ! gland of anal canal [Term] id: UBERON:0000361 name: red bone marrow namespace: uberon alt_id: UBERON:BTO_0001160-FMA_74595 synonym: "medulla ossium rubra" RELATED [BTO:0001160] synonym: "red marrow" RELATED [BTO:0001160] xref: BTO:0001160 xref: FMA:74595 xref: SCTID:75330005 is_a: UBERON:0002371 ! bone marrow [Term] id: UBERON:0000362 name: renal medulla namespace: uberon alt_id: UBERON:BTO_0001167-FMA_86327 def: "The renal medulla is the innermost part of the kidney. The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla (latin renes medulla = kidney middle) contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water. [WP,unvetted]." [Wikipedia:Renal_medulla] synonym: "kidney medulla" EXACT [OBOL:automatic] synonym: "medulla of kidney" EXACT [OBOL:automatic] synonym: "medulla renalis" EXACT [FMA:74268, FMA:TA] synonym: "medullary pyramids" EXACT [FMA:74268] synonym: "pyramides renales" EXACT [FMA:74268, FMA:TA] synonym: "renal marrow" RELATED [BTO:0001167] synonym: "renal medullae" EXACT [FMA:86327] synonym: "renal medullae set" EXACT [FMA:86327] synonym: "renal pyramids" EXACT [FMA:74268] synonym: "renal pyramids set" EXACT [FMA:74268] xref: BTO:0001167 xref: EMAPA:19279 xref: FMA:74268 xref: GAID:425 xref: MA:0000373 xref: MESH:A.05.810.453.466 xref: SCTID:30737000 xref: galen:MedullaOfKidney xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg xref: ncithesaurus:Renal_Medulla is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000958 ! medulla is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0000363 name: reticuloendothelial system namespace: uberon alt_id: UBERON:BTO_0001174-FMA_84189 def: "A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES. A lymphoma of the reticuloendothelial system is called reticuloendotheliosis[WP]." [Wikipedia:Reticuloendothelial_system] synonym: "RES" EXACT [Wikipedia:Reticuloendothelial_system] synonym: "lymphoreticular" RELATED [BioMart:BioMart] synonym: "lymphoreticular system" EXACT [Wikipedia:Reticuloendothelial_system] synonym: "mononuclear phagocyte system" EXACT [FMA:84189] xref: BTO:0001174 xref: EV:0100048 xref: FMA:84189 xref: GAID:1004 xref: MESH:A.15.382.812 xref: SCTID:278874002 xref: ncithesaurus:Reticuloendothelial_System is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0000364 name: rootlet namespace: uberon alt_id: UBERON:BTO_0001192-FMA_76787 is_obsolete: true synonym: "Rootlets" EXACT [FMA:76787] synonym: "Rootlets set" EXACT [FMA:76787] synonym: "fila radicularia" EXACT [FMA:76787, FMA:TA] xref: BTO:0001192 xref: FMA:76787 [Term] id: UBERON:0000365 name: urothelium namespace: uberon alt_id: UBERON:BTO_0001245-FMA_67695 def: "The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium] comment: consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium' synonym: "uroepithelium" EXACT [FMA:67695] xref: BTO:0003906 xref: EMAPA:28089 xref: FMA:67695 xref: GAID:935 xref: MESH:A.10.272.850 xref: SCTID:57789003 xref: ncithesaurus:Urothelium is_a: UBERON:0005910 ! transitional epithelium is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0000366 name: flexor muscle namespace: uberon alt_id: UBERON:BTO_0001257-FMA_74559 def: "A muscle that when contracted acts to bend a joint or limb in the body." [BTO:0001257] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "flexor" RELATED [] xref: BTO:0001257 xref: FMA:74559 xref: FMA:74999 xref: ZFA:0005271 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0001134 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! skeletal muscle tissue relationship: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0000368 name: adductor brevis namespace: uberon alt_id: UBERON:BTO_0001288-FMA_22442 def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [Wikipedia:Adductor_brevis_muscle] synonym: "Musculus adductos brevis" EXACT [FMA:22442] synonym: "adductor brevis muscle" EXACT [] xref: BTO:0001288 xref: FMA:22442 xref: OpenCyc:Mx4rv13lfJwpEbGdrcN5Y29ycA xref: SCTID:181687007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004252 ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0000369 name: corpus striatum namespace: uberon alt_id: UBERON:BTO_0001311-FMA_77616 def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum] comment: The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum synonym: "striate body" RELATED [BTO:0001311] synonym: "striated body" RELATED [BTO:0001311] xref: BTO:0001311 xref: EFO:0000381 xref: EMAPA:17549 xref: EV:0100184 xref: FMA:77616 xref: GAID:667 xref: MESH:A.08.186.211.730.885.105.487 xref: SCTID:279318005 xref: VHOG:0001175 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray656.png/200px-Gray656.png xref: ncithesaurus:Corpus_Striatum is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0002420 ! basal ganglion [Term] id: UBERON:0000370 name: adductor magnus namespace: uberon alt_id: UBERON:BTO_0001312-FMA_22443 def: "The adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP]." [Wikipedia:Adductor_magnus_muscle] synonym: "adductor magnus muscle" EXACT [] xref: BTO:0001312 xref: FMA:22443 xref: OpenCyc:Mx4rvuSd6JwpEbGdrcN5Y29ycA xref: SCTID:181688002 xref: galen:AdductorMagnus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004252 ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0000371 name: syncytiotrophoblast namespace: uberon alt_id: UBERON:BTO_0001335-FMA_83040 def: "outer syncytial layer of the trophoblast." [Wikipedia:Syncytiotrophoblast] synonym: "syncytial trophoblast" EXACT [FMA:83040] synonym: "syntrophoblast" RELATED [] synonym: "syntrophoblast layer" EXACT [ISBN10:0073040584] xref: BTO:0001335 xref: EHDAA:129 xref: EHDAA:91 xref: EMAPA:16068 xref: FMA:83040 xref: SCTID:256965005 xref: ncithesaurus:Syncytiotrophoblast is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 ! trophoblast relationship: part_of UBERON:0004364 ! ectoplacental cone [Term] id: UBERON:0000372 name: extensor digitorum brevis namespace: uberon alt_id: UBERON:BTO_0001337-FMA_51140 def: "a muscle on the upper surface of the foot that helps extend digits 2 through 4." [Wikipedia:Extensor_digitorum_brevis_muscle] synonym: "extensor digitorum brevis muscle" EXACT [] xref: BTO:0001337 xref: FMA:51140 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray441.png/200px-Gray441.png is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0001498 ! muscle of foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0000373 name: tapetum of corpus callosum namespace: uberon alt_id: UBERON:BTO_0001350-FMA_77208 def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]" [Wikipedia:Tapetum_of_corpus_callosum] comment: not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis synonym: "tapetum" BROAD INCONSISTENT [FMA:77208] xref: FMA:77208 xref: SCTID:279312006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0000375 name: mandibular nerve namespace: uberon alt_id: UBERON:BTO_0001375-FMA_52996 def: "the motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [MP:0009800, Wikipedia:Mandibular_nerve] synonym: "Inferior maxillary nerve" EXACT [FMA:52996] synonym: "Mandibular division [V3]" EXACT [FMA:52996] synonym: "Mandibular division [Vc]" EXACT [FMA:52996] synonym: "Mandibular division of fifth cranial nerve" EXACT [FMA:52996] synonym: "Mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996] synonym: "Mandibular nerve [V3]" EXACT [FMA:52996] synonym: "Mandibular nerve [Vc]" EXACT [FMA:52996] synonym: "Nervus mandibularis [Vc; V3]" EXACT [FMA:52996] synonym: "Third division of fifth cranial nerve" EXACT [FMA:52996] synonym: "Third division of trigeminal nerve" EXACT [FMA:52996] synonym: "nervus mandibularis" RELATED [BTO:0001375] synonym: "nervus mandibularis [v3]" EXACT [FMA:52996, FMA:TA] synonym: "nervus mandibularis [vc]" EXACT [FMA:52996, FMA:TA] synonym: "trigeminal V nerve mandibular division" EXACT [MA:0001101] xref: BTO:0001375 xref: EHDAA2:0002086 xref: FMA:52996 xref: GAID:834 xref: MA:0001101 xref: MESH:A.08.800.800.120.760.500 xref: OpenCyc:Mx4rvcQKSpwpEbGdrcN5Y29ycA xref: SCTID:280212008 xref: VHOG:0001345 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray781.png/200px-Gray781.png xref: ncithesaurus:Inferior_Maxillary_Nerve is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001021 ! nerve is_a: UBERON:0004732 ! segmental subdivision of nervous system [Term] id: UBERON:0000376 name: hindlimb stylopod namespace: uberon alt_id: UBERON:BTO_0001376-FMA_24967 def: "In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]." [Wikipedia:Thigh] comment: Naming conventions for pod terms under discussion within phenoscape group synonym: "Proximal segment of free lower limb" EXACT [FMA:24967] synonym: "hind limb stylopod" EXACT [OBOL:automatic] synonym: "hindlimb stylopod" EXACT [OBOL:automatic] synonym: "hindlimb stylopodium" EXACT [OBOL:automatic] synonym: "inferior member stylopod" EXACT [OBOL:automatic] synonym: "lower extremity stylopod" EXACT [OBOL:automatic] synonym: "stylopod of hind limb" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "stylopod of inferior member" EXACT [OBOL:automatic] synonym: "stylopod of lower extremity" EXACT [OBOL:automatic] synonym: "stylopod of lower limb" EXACT [] synonym: "thigh" EXACT [] synonym: "upper leg" EXACT [MA:0000052] xref: BTO:0001376 xref: EFO:0001943 xref: EHDAA2:0002130 xref: EHDAA:5171 xref: EHDAA:6200 xref: EMAPA:17499 xref: FMA:24967 xref: GAID:50 xref: MA:0000052 xref: MESH:A.01.378.610.750 xref: OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA xref: SCTID:302544002 xref: VHOG:0000349 xref: galen:Thigh xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4b/Gray1238.png/200px-Gray1238.png xref: ncithesaurus:Thigh is_a: UBERON:0002472 ! stylopod is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0000377 name: maxillary nerve namespace: uberon alt_id: UBERON:BTO_0001378-FMA_52724 def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve] synonym: "Maxillary division [V2]" EXACT [FMA:52724] synonym: "Maxillary division [Vb]" EXACT [FMA:52724] synonym: "Maxillary division of fifth cranial nerve" EXACT [FMA:52724] synonym: "Maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724] synonym: "Maxillary nerve [V2]" EXACT [FMA:52724] synonym: "Maxillary nerve [Vb]" EXACT [FMA:52724] synonym: "Nervus maxillaris (Vb; V2)" EXACT [FMA:52724] synonym: "Second division of fifth cranial nerve" EXACT [FMA:52724] synonym: "Second division of trigeminal nerve" EXACT [FMA:52724] synonym: "nervus maxillaris" RELATED [BTO:0001378] synonym: "nervus maxillaris [v2]" EXACT [FMA:52724, FMA:TA] synonym: "nervus maxillaris [vb]" EXACT [FMA:52724, FMA:TA] synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103] xref: BTO:0001378 xref: EHDAA2:0002087 xref: FMA:52724 xref: GAID:836 xref: MA:0001103 xref: MESH:A.08.800.800.120.760.550 xref: OpenCyc:Mx4rvWNU9JwpEbGdrcN5Y29ycA xref: SCTID:280211001 xref: VHOG:0001346 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001021 ! nerve is_a: UBERON:0004732 ! segmental subdivision of nervous system [Term] id: UBERON:0000378 name: tongue muscle namespace: uberon alt_id: UBERON:BTO_0001386-FMA_46689 def: "the muscular portion of the tongue." [MP:0004136, Wikipedia:Muscles_of_tongue] synonym: "muscle of tongue" EXACT [FMA:46689] xref: BTO:0001386 xref: FMA:46689 xref: SCTID:244781004 xref: ncithesaurus:Tongue_Muscle is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0000379 name: tracheal mucosa namespace: uberon alt_id: UBERON:BTO_0001390-FMA_7471 synonym: "Mucous membrane of trachea" EXACT [FMA:7471] synonym: "Tracheal mucous membrane" EXACT [FMA:7471] synonym: "Tunica mucosa (tracheae)" EXACT [FMA:7471] synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic] synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic] synonym: "mucosa of trachea" EXACT [OBOL:automatic] synonym: "mucosa of windpipe" EXACT [OBOL:automatic] synonym: "mucous membrane of trachea" EXACT [OBOL:automatic] synonym: "mucous membrane of windpipe" EXACT [OBOL:automatic] synonym: "organ mucosa of trachea" EXACT [OBOL:automatic] synonym: "organ mucosa of windpipe" EXACT [OBOL:automatic] synonym: "trachea mucosa" EXACT [OBOL:automatic] synonym: "trachea mucosa of organ" EXACT [OBOL:automatic] synonym: "trachea mucous membrane" EXACT [OBOL:automatic] synonym: "trachea organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa tracheae" EXACT [FMA:7471, FMA:TA] synonym: "windpipe mucosa" EXACT [OBOL:automatic] synonym: "windpipe mucosa of organ" EXACT [OBOL:automatic] synonym: "windpipe mucous membrane" EXACT [OBOL:automatic] synonym: "windpipe organ mucosa" EXACT [OBOL:automatic] xref: BTO:0001390 xref: FMA:7471 xref: SCTID:660006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004785 ! respiratory system mucosa [Term] id: UBERON:0000380 name: tuber namespace: uberon alt_id: UBERON:BTO_0001400-FMA_75430 is_obsolete: true comment: undefined in FMA. BTO and MIAA refers to plant structure only xref: BTO:0001400 xref: EFO:0001015 xref: FMA:75430 xref: OpenCyc:Mx4raeDj5Cw8QdiT7e8pb2JzAA [Term] id: UBERON:0000381 name: detrusor namespace: uberon alt_id: UBERON:BTO_0001453-FMA_68018 def: "The outer largely longitudinally arranged musculature of the bladder wall[BTO]. The fibers of the detrusor muscle arise from the posterior surface of the body of the pubis in both sexes (musculi pubovesicales), and in the male from the adjacent part of the prostate and its capsule. These fibers pass, in a more or less longitudinal manner, up the inferior surface of the bladder, over its apex, and then descend along its fundus to become attached to the prostate in the male, and to the front of the vagina in the female. At the sides of the bladder the fibers are arranged obliquely and intersect one another[WP]." [BTO:0001453, Wikipedia:Detrusor_urinae_muscle] synonym: "detrusor muscle" EXACT [BTO:0001453] synonym: "detrusor muscle of bladder" EXACT [EMAPA:28637] synonym: "detrusor urinae muscle" EXACT [Wikipedia:Detrusor_urinae_muscle] synonym: "muscularis propria of the urinary bladder" EXACT [Wikipedia:Detrusor_urinae_muscle] synonym: "urinary bladder detrussor smooth muscle" RELATED [MA:0001698] xref: BTO:0001453 xref: EMAPA:28637 xref: FMA:68018 xref: MA:0001698 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004228 ! urinary bladder smooth muscle relationship: part_of UBERON:0001256 ! wall of urinary bladder [Term] id: UBERON:0000382 name: apocrine sweat gland namespace: uberon alt_id: UBERON:BTO_0001458-FMA_59155 def: "Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. In humans, apocrine sweat glands are found only in certain locations of the body: the axillae (armpits), the areola of the nipples, and the genitoanal region. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]." [Wikipedia:Apocrine_sweat_glands] comment: A note of confusion is the difference between apocrine secretion and apocrine sweat gland. Apocrine secretion refers to the apical loss of a cell's membrane to create cell blebs, thus creating a secretory product. Apocrine sweat gland refers to a structure, not a secretion process. Apocrine sweat glands actually use a merocrine type secretion, or that mediated by exocytosis of secretory granules. When \"apocrine gland\" is used without the word sweat, it is often referring to the gland which uses merocrine secretion, and not the secretion method. The important difference in apocrine sweat gland structure is its larger lumen, compared to the more narrow lumen of the eccrine sweat gland. subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0001458 xref: FMA:59155 xref: MESH:A.10.336.899.206 xref: SCTID:399916008 xref: ncithesaurus:Apocrine_Sweat_Gland is_a: UBERON:0001820 ! sweat gland is_a: UBERON:0008974 ! apocrine gland [Term] id: UBERON:0000383 name: musculature of body namespace: uberon alt_id: UBERON:BTO_0001485-FMA_72954 def: "The sum of all muscles in the body. There is only one set of muscles per organism" [GOC:cjm] comment: we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA synonym: "Set of muscles of body" EXACT [FMA:72954] synonym: "muscle system" EXACT [] synonym: "muscle system of body" EXACT [] synonym: "muscular system" EXACT [FMA:72954] synonym: "musculature system" EXACT [BILA:0000088] synonym: "muskelsystem" RELATED [BTO:0001485] synonym: "set of all muscles" EXACT [FMA:72954] synonym: "vertebrate muscular system" EXACT [BTO:0001369] xref: AAO:0000307 xref: BILA:0000088 xref: BTO:0001369 xref: BTO:0001485 xref: EFO:0000801 xref: FBbt:00005069 xref: FMA:72954 xref: MA:0002888 xref: MAT:0000025 xref: MIAA:0000025 xref: VAO:0000033 xref: XAO:0004042 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0000385 name: labial gland namespace: uberon alt_id: UBERON:BTO_0001548-FMA_71613 is_obsolete: true comment: the label 'labial gland' refers to two distinct classes. From the BTO def: 1. One of the small tubular mucous and serous glands lying beneath the mucous membrane of the lips.n2. A salivary gland, or modification thereof, opening at the base of the labium in certain insects. synonym: "Labial glands" EXACT [FMA:71613] synonym: "Labial glands set" EXACT [FMA:71613] synonym: "glandulae labiales" EXACT [FMA:71613, FMA:TA] xref: BTO:0001548 xref: FMA:71613 xref: HAO:0000449 [Term] id: UBERON:0000387 name: meniscus namespace: uberon alt_id: UBERON:BTO_0001592-FMA_76690 def: "crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)] synonym: "articular disc" EXACT [FMA:76690] xref: BTO:0001592 xref: EV:0100145 xref: FMA:76690 xref: galen:Meniscus xref: ncithesaurus:Meniscus is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000388 name: epiglottis namespace: uberon alt_id: UBERON:BTO_0001628-FMA_55130 def: "a flap of elastic cartilage tissue covered with a mucous membrane, attached to the entrance of the larynx. It projects obliquely upwards behind the tongue and the hyoid bone, pointing dorsally." [Wikipedia:Epiglottis] comment: Editor note: refine definition to better distinguish cartilage from the whole structure xref: BTO:0001628 xref: EHDAA2:0004081 xref: EMAPA:18289 xref: FMA:55130 xref: GAID:111 xref: MESH:A.02.165.507.411 xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA xref: SCTID:245502004 xref: ncithesaurus:Epiglottis is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0000389 name: lens cortex namespace: uberon alt_id: UBERON:BTO_0001632-FMA_58970 synonym: "cortex of lens" EXACT [FMA:58970] xref: BTO:0001632 xref: FMA:58970 xref: MESH:A.09.371.509.225 xref: SCTID:280626006 is_a: UBERON:0001851 ! cortex is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0000390 name: lens nucleus namespace: uberon alt_id: UBERON:BTO_0001633-FMA_58971 def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633] comment: editor note: needs checked; cf nucleus in GO synonym: "nucleus of lens" EXACT [FMA:58971] xref: BTO:0001633 xref: FMA:58971 xref: MESH:A.09.371.509.670 xref: SCTID:280628007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0000391 name: leptomeninx namespace: uberon alt_id: UBERON:BTO_0001634-FMA_231515 def: "pia mater or arachnoid mater." [Wikipedia:Leptomeninges] comment: AO notes: in FMA/NIF this is a superclass of PM/AM - in BTO it is the mereological sum. We go with superclass here, as we are naming the class in the singular. Editor notes: check relationship to secondary meninx subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634] synonym: "leptomeninges" EXACT PLURAL [NIF_GrossAnatomy:nlx_anat_090207] synonym: "pia-arachnoid" RELATED [BTO:0001634] xref: BTO:0001634 xref: FMA:231515 xref: NIF_GrossAnatomy:nlx_anat_090207 xref: SCTID:362303006 xref: ncithesaurus:Leptomeninges is_a: UBERON:0002360 ! meninx [Term] id: UBERON:0000392 name: longissimus namespace: uberon alt_id: UBERON:BTO_0001648-FMA_77178 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus] synonym: "musculus longissimus" RELATED [BTO:0001648] xref: BTO:0001648 xref: FMA:77178 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000395 name: cochlear ganglion namespace: uberon alt_id: UBERON:BTO_0001688-FMA_53445 def: "group of nerve cells that serve the sense of hearing by sending a representation of sound from the cochlea to the brain. The cell bodies of the spiral ganglion neurons are found in the spiral structure of the cochlea[WP]. the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]." [MP:0002855, Wikipedia:Spiral_ganglion] synonym: "Corti's ganglion" EXACT [FMA:53445] synonym: "ganglion cochlearis" RELATED [BTO:0001688] synonym: "ganglion of Corti" EXACT [FMA:53445] synonym: "ganglion spirale cochleae" RELATED [BTO:0001688] synonym: "spiral ganglion" EXACT [FMA:53445] synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688] synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085] xref: BTO:0001688 xref: EHDAA2:0002198 xref: FMA:53445 xref: GAID:722 xref: MA:0001085 xref: MESH:A.08.340.390.800 xref: SCTID:368955007 xref: VHOG:0001183 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray903.png/200px-Gray903.png is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002827 ! auditory ganglion relationship: part_of UBERON:0006723 ! cochlear modiolus [Term] id: UBERON:0000396 name: vallate papilla namespace: uberon alt_id: UBERON:0002927 alt_id: UBERON:BTO_0001705-FMA_71449 alt_id: UBERON:NIF_GrossAnatomy_birnlex_4106_2-MA_0001594 def: "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongue" [BTO:0001705, Wikipedia:Circumvallate_papilla] synonym: "Vallate papilla of tongue" EXACT [] synonym: "circumvallate papilla" EXACT [MA:0001594] synonym: "circumvallate papilla of tongue" EXACT [FMA:54822] synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA] xref: BTO:0001705 xref: EMAPA:18271 xref: EMAPA:18654 xref: EMAPA:18871 xref: FMA:54822 xref: MA:0001594 xref: NIF_GrossAnatomy:birnlex_4106_2 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1015.png/200px-Gray1015.png xref: ncithesaurus:Circumvallate_Papilla is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0000397 name: colonic epithelium namespace: uberon alt_id: UBERON:BTO_0001709-FMA_17302 def: "An epithelium that is part of a colon [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Colon epithelium" EXACT [FMA:17302] synonym: "colon epithelial tissue" EXACT [OBOL:automatic] synonym: "colon epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of colon" EXACT [OBOL:automatic] synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic] synonym: "epithelium of colon" EXACT [OBOL:automatic] synonym: "epithelium of large bowel" EXACT [OBOL:automatic] synonym: "large bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "large bowel epithelium" EXACT [OBOL:automatic] synonym: "posterior intestine epithelium" EXACT [ZFA:0005128] xref: BTO:0001709 xref: FMA:17302 xref: SCTID:42978003 xref: ZFA:0005128 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0001278 ! epithelium of large intestine [Term] id: UBERON:0000398 name: sternal cartilage namespace: uberon alt_id: UBERON:BTO_0001721-FMA_32567 synonym: "cartilage of sternum" EXACT [FMA:32567] synonym: "cartilago costalis" RELATED [BTO:0001721] xref: BTO:0001721 xref: FMA:32567 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003837 ! thoracic segment connective tissue [Term] id: UBERON:0000399 name: jejunal mucosa namespace: uberon alt_id: UBERON:0003349 alt_id: UBERON:BTO_0001742-FMA_14949 def: "A mucosa that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal mucous membrane" EXACT [FMA:14949] synonym: "jejunum mucosa" EXACT [FMA:14949] synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic] synonym: "jejunum mucous membrane" EXACT [OBOL:automatic] synonym: "jejunum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of jejunum" EXACT [FMA:14949] synonym: "mucosa of organ of jejunum" EXACT [OBOL:automatic] synonym: "mucous membrane of jejunum" EXACT [OBOL:automatic] synonym: "organ mucosa of jejunum" EXACT [OBOL:automatic] xref: BTO:0001742 xref: EMAPA:27109 xref: EMAPA:27347 xref: FMA:14949 xref: SCTID:362151009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0000400 name: jejunal epithelium namespace: uberon alt_id: UBERON:BTO_0001743-FMA_17232 xref: BTO:0001743 xref: FMA:17232 xref: SCTID:57300004 is_a: UBERON:0001902 ! epithelium of small intestine relationship: part_of UBERON:0008343 ! intestinal villus of jejunum [Term] id: UBERON:0000401 name: mandibular ramus namespace: uberon alt_id: UBERON:BTO_0001751-FMA_52828 def: "The ramus of the mandible (perpendicular portion) is quadrilateral in shape, and has two surfaces, four borders, and two processes[WP]." [Wikipedia:Ramus_of_the_mandible] synonym: "lower ramus" RELATED [Wikipedia:Ramus_of_the_mandible] synonym: "mandible ramus" EXACT [MA:0002815] synonym: "rami mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible] synonym: "ramus mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible] synonym: "ramus of mandible" EXACT [FMA:52828] xref: BTO:0001751 xref: EMAPA:25100 xref: FMA:52828 xref: MA:0002815 xref: SCTID:361739000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0000402 name: nasal vestibule namespace: uberon alt_id: UBERON:BTO_0001761-FMA_59644 def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule] synonym: "vestibular part of nasal cavity" EXACT [FMA:59644] synonym: "vestibulum nasale" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED [BTO:0001761] xref: BTO:0001761 xref: FMA:59644 xref: SCTID:278940000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray994.png/200px-Gray994.png is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0000403 name: scalp namespace: uberon alt_id: UBERON:BTO_0001809-FMA_46494 def: "The scalp is the anatomical area bordered by the face anteriorly and the neck to the sides and posteriorly. [WP,unvetted]." [Wikipedia:Scalp] xref: BTO:0001809 xref: FMA:46494 xref: GAID:80 xref: MESH:A.01.456.810 xref: OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA xref: SCTID:181480002 xref: galen:Scalp xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Double_cowlick.jpg/200px-Double_cowlick.jpg is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0000407 name: sympathetic trunk namespace: uberon alt_id: UBERON:BTO_0001834-FMA_6258 def: "One of a a paired bundle of nerve fibers that run from the base of the skull to the coccyx." [Wikipedia:Sympathetic_trunk] synonym: "gangliated cord" EXACT [Wikipedia:Sympathetic_trunk] synonym: "sympathetic chain" EXACT [FMA:6258] synonym: "sympathetic ganglionic chain" EXACT [Wikipedia:Sympathetic_trunk] xref: AAO:0010791 xref: BTO:0001834 xref: EV:0100374 xref: FMA:6258 xref: SCTID:181099004 xref: XAO:0000211 is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0001021 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! nerve relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0000408 name: vertebral ganglion namespace: uberon alt_id: UBERON:BTO_0001835-FMA_6572 synonym: "Intermediate ganglion" EXACT [FMA:6572] xref: BTO:0001835 xref: FMA:6572 xref: SCTID:176596009 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0000409 name: serous gland namespace: uberon alt_id: UBERON:BTO_0001837-FMA_62889 def: "glands that secrete watery albuminous material that often contains enzymes." [MP:0008052] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0001837 xref: FMA:62889 is_a: UBERON:0002365 ! exocrine gland [Term] id: UBERON:0000410 name: bronchial mucosa namespace: uberon alt_id: UBERON:BTO_0001846-FMA_62652 def: "A mucosa that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "Mucous membrane of bronchus" EXACT [FMA:62652] synonym: "bronchi mucosa" EXACT [OBOL:automatic] synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchi mucous membrane" EXACT [OBOL:automatic] synonym: "bronchi organ mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchial trunk mucous membrane" EXACT [OBOL:automatic] synonym: "bronchial trunk organ mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic] synonym: "tunica mucosa bronchi" EXACT [FMA:62652, FMA:TA] xref: BTO:0001846 xref: FMA:62652 xref: SCTID:30802009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004785 ! respiratory system mucosa [Term] id: UBERON:0000411 name: visual cortex namespace: uberon alt_id: UBERON:BTO_0001857-FMA_242644 def: "Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735] comment: Editor note: merge with primary visual cortex? FMA and BTO treat as distinct synonym: "V1" RELATED [Wikipedia:Visual_cortex] synonym: "striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735] xref: BTO:0001857 xref: EFO:0000916 xref: EV:0100171 xref: FMA:242644 xref: GAID:679 xref: MESH:A.08.186.211.730.885.213.571.735 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0000412 name: dermal papilla namespace: uberon alt_id: UBERON:BTO_0001858-FMA_70737 def: "small, nipple-like extensions (or interdigitations) of the dermis into the epidermis. They can be observed at the surface of the skin in hands and feet as epidermal or papillary ridges (colloquially known as fingerprints). The dermal papillae nourishes all hair follicles and bring food and oxygen to the lower layers of epidermal cells. The pattern of ridges they produce in hands and feet are inherited features that are developed before birth. They remain unaltered (except size) throughout life, and are therefore used for fingerprints. The dermal papillae are part of the uppermost layer of the dermis, the papillary dermis, and the ridges they form greatly increase the surface area between the dermis and epidermis. Because the dermis' main function is to support the epidermis, this greatly increases the exchange of oxygen, nutrients, and waste products between these two layers. Additionally, the increase in surface area prevent the dermal and epidermal layers from separating from each others by strengthening the junction between them. With age, the papillae tend to flatten and sometimes increase in numbers. Dermal papillae also play a pivotal role in hair formation, growth and, cycling" [Wikipedia:Dermal_papillae] synonym: "DPC" RELATED [BTO:0001858] synonym: "dermal papilla cell" RELATED [BTO:0001858] synonym: "dermal papillae" EXACT PLURAL [] synonym: "follicular papilla" EXACT [FMA:70737] synonym: "hair follicle dermal papilla" RELATED [MP:0010687] synonym: "papilla corii" RELATED [BTO:0001858] synonym: "papilla dermatis" RELATED [BTO:0001858] synonym: "papilla dermis" RELATED [BTO:0001858] synonym: "papilla of corium" RELATED [BTO:0001858] synonym: "skin papilla" RELATED [BTO:0001858] xref: BTO:0001858 xref: FMA:70737 xref: SCTID:320101005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Skin.jpg/200px-Skin.jpg xref: ncithesaurus:Dermal_Papilla is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001992 ! papillary layer of dermis [Term] id: UBERON:0000414 name: mucous gland namespace: uberon alt_id: UBERON:BTO_0001979-FMA_62888 def: "Mucous glands, found in several different parts of the body, typically stain lighter than serous glands during standard histological preparation. Most are multicellular, but goblet cell are single-celled glands. [WP,unvetted]." [Wikipedia:Mucous_gland] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "glandula mucosa" RELATED [BTO:0001979] synonym: "muciparous gland" RELATED [BTO:0001979] xref: AAO:0010601 xref: BTO:0001979 xref: FMA:62888 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png is_a: UBERON:0002365 ! exocrine gland [Term] id: UBERON:0000415 name: artery wall namespace: uberon alt_id: UBERON:BTO_0002009-FMA_14155 def: "An anatomical wall that is part of an artery [Obol]." [OBOL:automatic] synonym: "Arterial wall" EXACT [FMA:14155] synonym: "wall of artery" EXACT [FMA:14155] xref: BTO:0002009 xref: FMA:14155 xref: galen:ArterialWall is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0000416 name: subdural space namespace: uberon alt_id: UBERON:BTO_0002082-FMA_83803 def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, PMID:8421539, Wikipedia:Subdural_space] comment: Consider obsoleting - see PMID:8421539 synonym: "cavum subdurale" RELATED [BTO:0002082] synonym: "spatium subdurale" RELATED [BTO:0002082] synonym: "subdural cavity" RELATED [BTO:0002082] synonym: "subdural cleavage" RELATED [BTO:0002082] synonym: "subdural cleft" RELATED [BTO:0002082] xref: BTO:0002082 xref: FMA:83803 xref: GAID:692 xref: MESH:A.08.186.566.395.687 xref: SCTID:362308002 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000417 name: primitive endoderm namespace: uberon alt_id: UBERON:0003226 alt_id: UBERON:BTO_0002123-FMA_85520 subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. xref: BTO:0002123 xref: EHDAA:44 xref: EHDAA:79 xref: EMAPA:16051 xref: EMAPA:16063 xref: FMA:85520 is_a: UBERON:0000925 ! endoderm [Term] id: UBERON:0000418 name: tubercle namespace: uberon alt_id: UBERON:BTO_0002173-FMA_75429 is_obsolete: true [Term] id: UBERON:0000420 name: myoepithelium namespace: uberon alt_id: UBERON:BTO_0002308-FMA_67805 def: "An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]." [CL:0000185, Wikipedia:Myoepithelial_cell] synonym: "myo-epithelium" EXACT [FMA:67805] xref: BTO:0002308 xref: FMA:67805 is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0000423 name: eccrine sweat gland namespace: uberon alt_id: UBERON:BTO_0002323-FMA_59154 subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "eccrine gland" EXACT [FMA:59154] xref: BTO:0002323 xref: FMA:59154 xref: GAID:945 xref: MESH:A.10.336.899.480 xref: SCTID:361699008 xref: ncithesaurus:Eccrine_Sweat_Gland is_a: UBERON:0001820 ! sweat gland [Term] id: UBERON:0000424 name: gastric pit namespace: uberon alt_id: UBERON:0000425 alt_id: UBERON:BTO_0002364-FMA_62947 def: "Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits." [Wikipedia:Gastric_pits] synonym: "foveola gastrica" RELATED [BTO:0002364] synonym: "foveolae gastricae" EXACT PLURAL [FMA:76583, FMA:TA] synonym: "gastric foveola" EXACT [FMA:62947] xref: BTO:0002364 xref: FMA:62947 xref: SCTID:268426007 xref: ncithesaurus:Gastric_Pit is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001199 ! mucosa of stomach [Term] id: UBERON:0000426 name: extravillous trophoblast namespace: uberon alt_id: UBERON:BTO_0002366-FMA_86561 synonym: "intermediate trophoblast" EXACT [FMA:86561] synonym: "interstitial trophoblast" RELATED [BTO:0002366] xref: BTO:0002366 xref: FMA:86561 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000427 name: cytotrophoblastic cell namespace: uberon is_obsolete: true xref: ncithesaurus:Cytotrophoblastic_Cell [Term] id: UBERON:0000428 name: prostate epithelium namespace: uberon alt_id: UBERON:0002452 alt_id: UBERON:BTO_0002397-FMA_66812 def: "the prostate epithelium." [MP:0001168] comment: TODO - check 2 FMA IDs synonym: "epithelial tissue of prostate" EXACT [OBOL:automatic] synonym: "epithelial tissue of prostate gland" EXACT [OBOL:automatic] synonym: "epithelium of prostate" EXACT [OBOL:automatic] synonym: "epithelium of prostate gland" EXACT [OBOL:automatic] synonym: "epithelium of prostatic gland" EXACT [FMA:79643] synonym: "prostate epithelial tissue" EXACT [OBOL:automatic] synonym: "prostate gland epithelial tissue" EXACT [OBOL:automatic] synonym: "prostate gland epithelium" EXACT [] synonym: "prostatic epithelium" EXACT [FMA:66812] synonym: "prostatic gland epithelium" EXACT [] xref: BTO:0002397 xref: FMA:66812 xref: FMA:79643 xref: MA:0001737 xref: ncithesaurus:Prostatic_Epithelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0000429 name: enteric plexus namespace: uberon alt_id: UBERON:BTO_0002437-FMA_77597 def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437] comment: TODO - add subserosal plexus? synonym: "enteric nerve plexus" EXACT [FMA:77597] synonym: "plexus entericus" EXACT [BTO:0002437] synonym: "plexus nervosus entericus" EXACT [FMA:77597, FMA:TA] synonym: "sympathetic enteric nerve plexus" EXACT [FMA:77597] xref: BTO:0002437 xref: FMA:77597 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0000430 name: ventral intermediate nucleus of thalamus namespace: uberon alt_id: UBERON:BTO_0002469-FMA_84347 def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "nucleus ventralis intermedius thalami" RELATED [BTO:0002469] xref: BTO:0002469 xref: EV:0100208 xref: FMA:84347 xref: ZFA:0000370 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus is_a: UBERON:0002776 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! ventral nuclear group relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0000431 name: ventral medial complex of thalamus namespace: uberon alt_id: UBERON:BTO_0002470-FMA_77795 synonym: "nuclei ventrales mediales thalami" RELATED [BTO:0002470] synonym: "ventral medial complex of thalamus" EXACT [FMA:77795] synonym: "ventral medial nuclei of thalamus" EXACT [FMA:77795] xref: BTO:0002470 xref: FMA:77795 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0000432 name: endopeduncular nucleus namespace: uberon alt_id: UBERON:BTO_0002475-FMA_77691 def: "A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human." [MESH:A.08.186.211.730.385.800.240] comment: The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN] synonym: "entopeduncular nucleus" RELATED [] synonym: "nucleus endopeduncularis" RELATED [BTO:0002475] synonym: "nucleus entopeduncularis" RELATED [] xref: BTO:0002475 xref: FMA:77691 xref: MESH:A.08.186.211.730.385.800.240 xref: SCTID:82705008 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0009641 ! ansa lenticularis [Term] id: UBERON:0000433 name: posterior paraventricular nucleus of thalamus namespace: uberon alt_id: UBERON:BTO_0002477-FMA_76961 synonym: "dorsal paraventricular nucleus of thalamus" EXACT [FMA:76961] synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002477] xref: BTO:0002477 xref: FMA:76961 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0000434 name: anterior paraventricular nucleus of thalamus namespace: uberon alt_id: UBERON:BTO_0002478-FMA_76962 synonym: "nucleus paraventricularis anterior thalami" RELATED [BTO:0002478] synonym: "ventral paraventricular nucleus of thalamus" EXACT [FMA:76962] xref: BTO:0002478 xref: FMA:76962 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0000435 name: lateral tuberal nucleus namespace: uberon alt_id: UBERON:BTO_0002481-FMA_62336 def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481] synonym: "Lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "Lateral tuberal nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1206] synonym: "nuclei tuberales laterales" RELATED [BTO:0002481] xref: ABA:TU xref: BM:TU xref: BTO:0002481 xref: EV:0100240 xref: FMA:62336 xref: NIF_GrossAnatomy:birnlex_1206 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0000437 name: arachnoid barrier layer namespace: uberon alt_id: UBERON:BTO_0002498-FMA_231559 def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498] xref: BTO:0002498 xref: FMA:231559 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000438 name: set of arachnoid trabecula namespace: uberon alt_id: UBERON:BTO_0002500-FMA_77761 is_obsolete: true synonym: "Arachnoid trabeculae set" EXACT [FMA:77761] synonym: "trabeculae arachnoideae" EXACT [FMA:77761, FMA:TA] xref: BTO:0002500 xref: FMA:77761 [Term] id: UBERON:0000439 name: arachnoid trabecula namespace: uberon alt_id: UBERON:BTO_0002500-FMA_83979 def: "a small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue." [GO:0060343] synonym: "trabecula arachnoideum" RELATED [] xref: BTO:0002500 xref: FMA:83979 is_a: UBERON:0000440 ! trabecula is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000440 name: trabecula namespace: uberon alt_id: UBERON:BTO_0002501-FMA_85273 def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, Wikipedia:Trabecula] subset: grouping_class ! Subset consisting of classes creating for grouping purposes xref: BTO:0002501 xref: FMA:85273 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000442 name: right testicular vein namespace: uberon alt_id: UBERON:BTO_0002679-FMA_14341 def: "A vein that drains the left pampiniform plexus and empties into the left renal vein." [Dorlands_Medical_Dictionary:MerckSource] synonym: "vena testicularis (adrenalis) dextra" EXACT [FMA:14341] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002679 xref: FMA:14341 xref: MA:0002220 xref: SCTID:53500001 is_a: UBERON:0001144 ! testicular vein [Term] id: UBERON:0000443 name: left testicular vein namespace: uberon alt_id: UBERON:BTO_0002680-FMA_14345 def: "A vein that drains the right pampiniform plexus and empties into the inferior vena cava." [Dorlands_Medical_Dictionary:MerckSource] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002680 xref: FMA:14345 xref: MA:0002219 xref: SCTID:90988008 is_a: UBERON:0001144 ! testicular vein [Term] id: UBERON:0000444 name: lymphoid follicle namespace: uberon alt_id: UBERON:BTO_0002684-FMA_55222 synonym: "folliculus lymphaticus" RELATED [BTO:0002684] synonym: "lymph node follicle" EXACT [MA:0000742] synonym: "lymphatic follicle" RELATED [BTO:0002684] synonym: "lymphatic nodule" RELATED [BTO:0002684] synonym: "lymphoid nodule" EXACT [FMA:55222] synonym: "nodular lymphoid tissue" EXACT [FMA:55222] synonym: "nodulus lymphaticus" RELATED [BTO:0002684] synonym: "nodulus lymphoideus" RELATED [BTO:0002684] xref: BTO:0002684 xref: FMA:55222 xref: MA:0000742 xref: SCTID:64626006 xref: ncithesaurus:Lymphoid_Follicle is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0000445 name: habenular trigone namespace: uberon alt_id: UBERON:BTO_0002700-FMA_74868 def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [Wikipedia:Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies synonym: "trigone of habenulae" RELATED [BTO:0002700] synonym: "trigonum habenulae" RELATED [BTO:0002700] xref: BTO:0002700 xref: FMA:74868 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0000446 name: septum of telencephalon namespace: uberon alt_id: UBERON:BTO_0002705-FMA_61842 def: "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]." [FMA:61842] synonym: "area septalis" EXACT [FMA:61842, FMA:TA] synonym: "septal area" EXACT [FMA:61842] synonym: "septum" BROAD [NIF_GrossAnatomy:birnlex_963] synonym: "septum (NN)" EXACT [FMA:61842] synonym: "telencephalon septum" EXACT [FMA:61842] xref: BTO:0002705 xref: FMA:61842 xref: MA:0000924 xref: MESH:A.08.186.211.577.750 xref: NIF_GrossAnatomy:birnlex_963 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0000449 name: decidual cell namespace: uberon alt_id: UBERON:BTO_0002770-FMA_86480 def: "Before the fertilized ovum reaches the uterus, the mucous membrane of the body of the uterus undergoes important changes and is then known as the decidua. The thickness and vascularity of the mucous membrane are greatly increased; its glands are elongated and open on its free surface by funnel-shaped orifices, while their deeper portions are tortuous and dilated into irregular spaces. The interglandular tissue is also increased in quantity, and is crowded with large round, oval, or polygonal cells, termed decidual cells. Their enlargement is due to glycogen and lipid accumulation in the cytoplasm allowing these cells to provide a rich source of nutrition for the developing embryo. [WP,unvetted]." [Wikipedia:Decidual_cells] comment: request from CL xref: BTO:0002770 xref: FMA:86480 xref: ncithesaurus:Decidual_Cell is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0000450 name: corpus albicans namespace: uberon alt_id: UBERON:BTO_0002784-FMA_18620 synonym: "Corpus albicans of ovary" EXACT [FMA:18620] synonym: "corpus fibrosum" RELATED [BTO:0002784] xref: BTO:0002784 xref: EMAPA:29888 xref: FMA:18620 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000451 name: prefrontal cortex namespace: uberon alt_id: UBERON:BTO_0002807-FMA_224850 def: "The prefrontal cortex (PFC) is the anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas. This brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals. The most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes). Many authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. [WP,unvetted]." [Wikipedia:Prefrontal_cortex] comment: TODO - check MA synonym: "frontal association cortex" RELATED ATTRIBUTION_REQUIRED [MA:0000906] synonym: "prefrontal association complex" RELATED [BTO:0002807] synonym: "prefrontal association cortex" EXACT [FMA:224850] xref: BTO:0002807 xref: EFO:0001384 xref: FMA:224850 xref: GAID:676 xref: MA:0000906 xref: MESH:A.08.186.211.730.885.213.270.700 xref: NIF_GrossAnatomy:nlx_anat_090801 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray726-Brodman-prefrontal.svg/200px-Gray726-Brodman-prefrontal.svg.png is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0000453 name: decidua basalis namespace: uberon alt_id: UBERON:BTO_0002819-FMA_86477 def: "Region between the blastocyst and the myometrium." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] comment: development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity synonym: "decidua serotina" RELATED [BTO:0002819] xref: BTO:0002819 xref: EFO:0001918 xref: FMA:86477 xref: MA:0002905 xref: SCTID:362841006 xref: ncithesaurus:Decidua_Basalis is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002450 ! decidua [Term] id: UBERON:0000454 name: cerebral subcortex namespace: uberon alt_id: UBERON:BTO_0002858-FMA_242188 synonym: "Cerebral medulla" EXACT [FMA:242188] synonym: "subcortex" RELATED [BTO:0002858] xref: BTO:0002858 xref: FMA:242188 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000456 name: bodily secretion namespace: uberon alt_id: UBERON:0006540 alt_id: UBERON:BTO_0002979-FMA_9675 def: "Body substance in a liquid or semisolid state produced by an exocrine gland. Example: saliva, sebum, blood, plasma, semen, urine." [FMA:9675] comment: AO notes: BTO has two distunct classes, with exocrine glandular secretion a subtype of secretion - however, all examples in BTO directly under secretion appear to be exocrine gland secretions synonym: "exocrine gland fluid" RELATED [] synonym: "exocrine gland fluid or secretion" RELATED [] synonym: "exocrine gland fluid/secretion" EXACT [MA:0002504] synonym: "exocrine gland secretion" RELATED [] synonym: "external secretion" RELATED [BTO:0002977] synonym: "secreted substance" EXACT [] synonym: "secretion" EXACT [FMA:9675] xref: BTO:0002977 xref: BTO:0002979 xref: FMA:9675 xref: MA:0002504 xref: MESH:A.12.200 xref: galen:Secretion xref: ncithesaurus:Exocrine_Gland_Fluid_or_Secretion is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000457 name: cavernous artery namespace: uberon alt_id: UBERON:BTO_0002996-FMA_70527 synonym: "Cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527] synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT [FMA:70527, FMA:TA] xref: BTO:0002996 xref: FMA:70527 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001637 ! artery [Term] id: UBERON:0000458 name: endocervix namespace: uberon alt_id: UBERON:BTO_0003002-FMA_86485 xref: BTO:0003002 xref: FMA:86485 xref: SCTID:264460007 xref: ncithesaurus:Endocervix is_a: UBERON:0000063 ! organ segment [Term] id: UBERON:0000459 name: uterine wall namespace: uberon alt_id: UBERON:BTO_0003083-FMA_17560 def: "An anatomical wall that is part of a uterus [Obol]." [OBOL:automatic] synonym: "anatomical wall of uterus" EXACT [OBOL:automatic] synonym: "uterus anatomical wall" EXACT [OBOL:automatic] synonym: "uterus wall" EXACT [OBOL:automatic] synonym: "wall of uterus" EXACT [OBOL:automatic] xref: BTO:0003083 xref: FMA:17560 xref: SCTID:245485002 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0000460 name: major vestibular gland namespace: uberon alt_id: UBERON:BTO_0003115-FMA_9598 def: "Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication." [Wikipedia:Bartholin's_glands] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "Bartholin's gland" EXACT [FMA:9598] synonym: "Duverney's gland" EXACT [FMA:9598] synonym: "Tiedemann's gland" EXACT [FMA:9598] synonym: "Vulvovaginal gland" EXACT [FMA:9598] synonym: "glandula vestibularis major" RELATED [BTO:0003115] synonym: "greater vestibular gland" RELATED [MA:0002936] synonym: "greater vestibular glands of bartholin" RELATED [Wikipedia:Bartholin%27s_gland] xref: BTO:0003115 xref: FMA:9598 xref: GAID:384 xref: MA:0002936 xref: MESH:A.05.360.319.887.220 xref: SCTID:362244005 is_a: UBERON:0002530 ! gland is_a: UBERON:0003297 ! gland of integumental system is_a: UBERON:0005398 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! female reproductive gland relationship: part_of UBERON:0002416 ! integumental system disjoint_from: UBERON:0010048 ! Duvernoy's gland property_value: "homologous_to" UBERON:0002366 [Term] id: UBERON:0000461 name: minor vestibular gland namespace: uberon alt_id: UBERON:BTO_0003116-FMA_20019 def: "Small mucous glands opening upon the vestibular mucous membrane between the urethral and the vaginal orifice." [BTO:0003116] comment: Editors note: compare with Skene's gland. Structure notes: check and part_of relationships to mammalian vulva / urethra subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "Guerin's gland" RELATED [BTO:0003116] synonym: "Schueller's gland" RELATED [BTO:0003116] synonym: "female urethral gland" BROAD [EMAPA:29653] synonym: "glandula vestibular minor" EXACT [FMA:20019] synonym: "glandula vestibulares minor" RELATED [BTO:0003116] synonym: "lesser vestibular gland" EXACT [FMA:20019] synonym: "paraurethral gland" RELATED [BTO:0003116] synonym: "periurethral gland" RELATED [BTO:0003116] synonym: "skene's gland" RELATED [BTO:0003116] synonym: "urethral gland of female urethra" RELATED [BTO:0003116] xref: BTO:0003116 xref: FMA:20019 xref: SCTID:279869001 is_a: UBERON:0002530 ! gland is_a: UBERON:0005398 ! female reproductive gland is_a: UBERON:0010187 ! female urethral gland relationship: part_of UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0001334 ! female urethra [Term] id: UBERON:0000462 name: villus namespace: uberon is_obsolete: true [Term] id: UBERON:0000463 name: portion of organism substance namespace: uberon alt_id: UBERON:CARO_0000004-FBbt_00007019 def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "body fluid or substance" EXACT [MA:0002450] synonym: "body substance" EXACT [FMA:9669] synonym: "organism substance" EXACT [] synonym: "portion of body substance" EXACT [FMA:9669] xref: AAO:0010839 xref: AEO:0000004 xref: BILA:0000004 xref: CARO:0000004 xref: EHDAA2:0003004 xref: FBbt:00007019 xref: FMA:9669 xref: HAO:0000004 xref: MA:0002450 xref: SPD:0000008 xref: TGMA:0001824 xref: XAO:0004001 xref: ZFA:0001487 xref: galen:BodySubstance xref: ncithesaurus:Body_Fluid_or_Substance is_a: UBERON:0000465 ! material anatomical entity relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0000464 name: anatomical space namespace: uberon alt_id: UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643 def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010110 xref: AEO:0000005 xref: BILA:0000005 xref: CARO:0000005 xref: EHDAA2:0003005 xref: FBbt:00007017 xref: FMA:5897 xref: HAO:0000005 xref: TAO:0001668 xref: TGMA:0001825 xref: XAO:0003190 xref: ZFA:0001643 is_a: UBERON:0000466 ! immaterial anatomical entity disjoint_from: UBERON:0006800 ! anatomical line [Term] id: UBERON:0000465 name: material anatomical entity namespace: uberon alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487 def: "Anatomical entity that has mass." [CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010264 xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 xref: FBbt:00007016 xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 xref: TGMA:0001826 is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000466 name: immaterial anatomical entity namespace: uberon alt_id: UBERON:CARO_0000007-FBbt_00007015 def: "Anatomical entity that has no mass." [CARO:MAH] subset: disjointness_axiom_removed ! A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology. subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "immaterial physical anatomical entity" EXACT [FMA:67112] xref: AAO:0010265 xref: AEO:0000007 xref: BILA:0000007 xref: CARO:0000007 xref: EHDAA2:0003007 xref: FBbt:00007015 xref: FMA:67112 xref: HAO:0000007 xref: TGMA:0001827 is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000467 name: anatomical system namespace: uberon alt_id: UBERON:CARO_0000011-XAO_0003002-ZFA_0001439 alt_id: UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176 def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "body system" EXACT [NIF_GrossAnatomy:birnlex_14] synonym: "organ system" EXACT [] synonym: "system" BROAD [GO:0048731] xref: AAO:0000007 xref: AEO:0000011 xref: BILA:0000011 xref: CARO:0000011 xref: EHDAA2:0001330 xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 xref: FBbt:00004856 xref: FMA:7149 xref: HAO:0000011 xref: MA:0000003 xref: NIF_GrossAnatomy:birnlex_14 xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ xref: SCTID:278195005 xref: TAO:0001439 xref: TGMA:0001831 xref: WBbt:0005746 xref: XAO:0003002 xref: ZFA:0001439 xref: galen:AnatomicalSystem xref: ncithesaurus:Organ_System is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0000468 name: multi-cellular organism namespace: uberon alt_id: UBERON:CARO_0000012-XAO_0003004 def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism] comment: TODO - split body and mc organism? body continues after death stage subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "Koerper" RELATED [BTO:0001489] synonym: "TS28" RELATED [MA:0002405] synonym: "adult mouse" EXACT [MA:0002405] synonym: "body" EXACT [] synonym: "organism" EXACT [] synonym: "whole body" EXACT [BTO:0001489] synonym: "whole organism" EXACT [] xref: AAO:0010026 xref: AEO:0000103 xref: AEO:0000191 xref: BILA:0000012 xref: BTO:0001489 xref: CARO:0000012 xref: EFO:0002906 xref: EHDAA2:0003103 xref: EHDAA2:0003191 xref: EHDAA:1 xref: EHDAA:9178 xref: EMAPA:25765 xref: EV:0100016 xref: FBbt:00000001 xref: FMA:256135 xref: HAO:0000012 xref: MA:0002405 xref: NIF_GrossAnatomy:birnlex_18 xref: TADS:0000001 xref: TAO:0001094 xref: TGMA:0001832 xref: VHOG:0000671 xref: WBbt:0007833 xref: XAO:0003004 xref: ZFA:0001094 xref: galen:Organism xref: ncithesaurus:Whole_Organism is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000470 name: cell part namespace: uberon alt_id: UBERON:CARO_0000014-FBbt_00007012-FMA_86454 def: "Anatomical structure that is a direct part of the cell." [CARO:MAH] comment: todo - move metadata to GO and obsolete this class. Note the inconsistency between the usage of the label 'cell component' in GO and CARO subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "cell component" RELATED [CARO:0000014] xref: AAO:0010271 xref: BILA:0000014 xref: CARO:0000014 xref: FBbt:00007012 xref: FMA:86454 xref: GO:0044464 xref: HAO:0000014 xref: NIF_Subcellular:sao-1337158144 xref: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA xref: TGMA:0001834 xref: ncithesaurus:Cell_Part is_a: UBERON:0000061 ! anatomical structure relationship: part_of CL:0000000 ! cell [Term] id: UBERON:0000471 name: compound organ component namespace: uberon alt_id: UBERON:CARO_0000019-XAO_0003039-ZFA_0001489 def: "Multi-tissue structure that is part of a compound organ." [CARO:0000019, CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010017 xref: AEO:0000019 xref: BILA:0000019 xref: CARO:0000019 xref: EHDAA2:0003019 xref: HAO:0000019 xref: TAO:0001489 xref: TGMA:0001835 xref: XAO:0003039 xref: ZFA:0001489 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000472 name: simple organ namespace: uberon alt_id: UBERON:CARO_0000021-XAO_0003038-ZFA_0001492 def: "Multi-tissue structure that is not part of a compound organ." [CARO:0000021, CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010051 xref: AEO:0000190 xref: BILA:0000021 xref: CARO:0000021 xref: EHDAA2:0003190 xref: HAO:0000021 xref: TAO:0001492 xref: TGMA:0001836 xref: XAO:0003038 xref: ZFA:0001492 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000473 name: testis namespace: uberon alt_id: UBERON:0002117 alt_id: UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598 def: "gonad of a male animal, produces and releases sperm." [Wikipedia:Testis] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "genitalia of male organism gonad" EXACT [OBOL:automatic] synonym: "genitalia of male organism gonada" EXACT [OBOL:automatic] synonym: "gonad of genitalia of male organism" EXACT [OBOL:automatic] synonym: "gonad of male genitalia" EXACT [OBOL:automatic] synonym: "gonad of male genitals" EXACT [OBOL:automatic] synonym: "gonad of male organism genitalia" EXACT [OBOL:automatic] synonym: "gonad of male organism reproductive system" EXACT [OBOL:automatic] synonym: "gonad of male reproductive system" EXACT [OBOL:automatic] synonym: "gonad of reproductive system of male organism" EXACT [OBOL:automatic] synonym: "gonada of genitalia of male organism" EXACT [OBOL:automatic] synonym: "gonada of male genitalia" EXACT [OBOL:automatic] synonym: "gonada of male genitals" EXACT [OBOL:automatic] synonym: "gonada of male organism genitalia" EXACT [OBOL:automatic] synonym: "gonada of male organism reproductive system" EXACT [OBOL:automatic] synonym: "gonada of male reproductive system" EXACT [OBOL:automatic] synonym: "gonada of reproductive system of male organism" EXACT [OBOL:automatic] synonym: "male genitalia gonad" EXACT [OBOL:automatic] synonym: "male genitalia gonada" EXACT [OBOL:automatic] synonym: "male genitals gonad" EXACT [OBOL:automatic] synonym: "male gonad" EXACT [OBOL:automatic] synonym: "male organism genitalia gonad" EXACT [OBOL:automatic] synonym: "male organism genitalia gonada" EXACT [OBOL:automatic] synonym: "male organism reproductive system gonad" EXACT [OBOL:automatic] synonym: "male organism reproductive system gonada" EXACT [OBOL:automatic] synonym: "male reproductive system gonad" EXACT [OBOL:automatic] synonym: "male reproductive system gonada" EXACT [OBOL:automatic] synonym: "orchis" RELATED [BTO:0001363] synonym: "reproductive system of male organism gonad" EXACT [OBOL:automatic] synonym: "reproductive system of male organism gonada" EXACT [OBOL:automatic] synonym: "testes" RELATED PLURAL [] synonym: "testicle" EXACT [FMA:7210] synonym: "testiculus" RELATED [BTO:0001363] xref: AAO:0000606 xref: BILA:0000124 xref: BTO:0001363 xref: EFO:0000984 xref: EHDAA2:0002007 xref: EHDAA:8146 xref: EMAPA:17972 xref: EV:0100102 xref: FBbt:00004928 xref: FMA:7210 xref: GAID:396 xref: HAO:0001007 xref: MA:0000411 xref: MAT:0000132 xref: MESH:A.05.360.444.849 xref: MIAA:0000132 xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA xref: SCTID:181431007 xref: TAO:0000598 xref: VHOG:0000252 xref: WBbt:0006794 xref: XAO:0000157 xref: ZFA:0000598 xref: galen:Testis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Gray1144.png/200px-Gray1144.png xref: ncithesaurus:Testis is_a: UBERON:0000991 ! gonad is_a: UBERON:0003135 ! male reproductive organ relationship: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0000949 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! endocrine system disjoint_from: UBERON:0000992 ! female gonad disjoint_from: UBERON:0009117 ! indifferent gonad [Term] id: UBERON:0000474 name: female reproductive system namespace: uberon alt_id: UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303 def: "The organs of the female reproductive system." [Wikipedia:Female_genitalia] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "female genital system" RELATED [] synonym: "female genitalia" RELATED [] synonym: "female organism genitalia" EXACT [OBOL:automatic] synonym: "female organism reproductive system" EXACT [OBOL:automatic] synonym: "female reproductive tract" RELATED [MA:0000381] synonym: "genitalia of female organism" EXACT [OBOL:automatic] synonym: "gynaecological tissue" RELATED [BTO:0000083] synonym: "reproductive system of female organism" EXACT [OBOL:automatic] synonym: "systema genitale femininum" RELATED [BTO:0000083] xref: BTO:0000083 xref: EFO:0000969 xref: EHDAA2:0000506 xref: EHDAA:8116 xref: EMAPA:17959 xref: EV:0100110 xref: FBbt:00004864 xref: FMA:45663 xref: GAID:364 xref: HAO:0000324 xref: MA:0000381 xref: MESH:A.05.360.319 xref: MIAA:0000028 xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA xref: TGMA:0000635 xref: VHOG:0000726 xref: WBbt:0006748 xref: XAO:0000156 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png xref: ncithesaurus:Female_Reproductive_System is_a: UBERON:0000990 ! reproductive system relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0000475 name: organism subdivision namespace: uberon alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308 def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part] comment: Editor note: revise after CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "body part" RELATED [] synonym: "body region" RELATED [FMA:7153] synonym: "cardinal body part" RELATED [FMA:7153] xref: AAO:0010053 xref: AEO:0000032 xref: BILA:0000032 xref: CARO:0000032 xref: EFO:0000808 xref: EHDAA2:0003032 xref: FBbt:00007009 xref: FMA:7153 xref: HAO:0000032 xref: MA:0002433 xref: MAT:0000293 xref: MESH:A.01 xref: MIAA:0000293 xref: OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA xref: TAO:0001308 xref: TGMA:0001840 xref: XAO:0003013 xref: ZFA:0001308 xref: galen:BodyPart xref: ncithesaurus:Body_Part is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0000476 name: acellular anatomical structure namespace: uberon alt_id: UBERON:CARO_0000040-FBbt_00007013-FMA_63863-ZFA_0000382 def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010268 xref: AEO:0000040 xref: BILA:0000040 xref: CARO:0000040 xref: EHDAA2:0003040 xref: FBbt:00007013 xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 xref: TGMA:0001841 xref: XAO:0003162 xref: ZFA:0000382 is_a: UBERON:0000061 ! anatomical structure disjoint_from: UBERON:0000480 ! anatomical group [Term] id: UBERON:0000477 name: anatomical cluster namespace: uberon alt_id: UBERON:CARO_0000041-FMA_49443-ZFA_0001478 def: "Anatomical group that has its parts adjacent to one another." [CARO:MAH] subset: disjointness_axiom_removed ! A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology. subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010009 xref: AEO:0000041 xref: BILA:0000041 xref: CARO:0000041 xref: EHDAA2:0003041 xref: FBbt:00007277 xref: FMA:49443 xref: HAO:0000041 xref: TADS:0000605 xref: TAO:0001478 xref: TGMA:0001842 xref: XAO:0003160 xref: ZFA:0001478 is_a: UBERON:0000480 ! anatomical group [Term] id: UBERON:0000478 name: extraembryonic structure namespace: uberon alt_id: UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020 def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH] comment: see also conceptus extraembryonic component in EHDAA2 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "extra-embryonic structure" EXACT [] synonym: "extraembryonic component" RELATED [] synonym: "extraembryonic tissue" RELATED [] xref: AAO:0010020 xref: AEO:0000042 xref: BILA:0000042 xref: CARO:0000042 xref: EHDAA2:0003042 xref: EHDAA:46 xref: EMAPA:16042 xref: FBbt:00005835 xref: FMA:85537 xref: HAO:0000042 xref: SCTID:314908006 xref: TAO:0000020 xref: TGMA:0001843 xref: VHOG:0000292 xref: XAO:0004005 xref: ZFA:0000020 xref: ncithesaurus:Extraembryonic_Structure is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo disjoint_from: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000479 name: tissue namespace: uberon alt_id: UBERON:CARO_0000043-FBbt_00007003-XAO_0003040-ZFA_0001477 def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, FMA:9637] comment: This class was sourced from CARO, which was initially sourced from FMA. Nomenclature changes have been made. Note also AEO introduces a class AEO:0000013 'single-cell tissue' subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "portion of tissue" EXACT [CARO:0000043] synonym: "simple tissue" EXACT [AEO:0000043] synonym: "tissue portion" EXACT [] xref: AAO:0000607 xref: AAO:0010054 xref: AEO:0000043 xref: BILA:0000043 xref: CARO:0000043 xref: EHDAA2:0003043 xref: FBbt:00007003 xref: FMA:9637 xref: HAO:0000043 xref: MA:0003002 xref: MESH:A.10 xref: NIF_GrossAnatomy:birnlex_19 xref: TAO:0001477 xref: TGMA:0001844 xref: WBbt:0005729 xref: XAO:0003040 xref: ZFA:0001477 xref: galen:Tissue xref: ncithesaurus:Tissue is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000480 name: anatomical group namespace: uberon alt_id: UBERON:CARO_0000054-XAO_0003001-ZFA_0001512 def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010008 xref: AEO:0000054 xref: BILA:0000054 xref: CARO:0000054 xref: EHDAA2:0003054 xref: HAO:0000054 xref: TAO:0001512 xref: TGMA:0001846 xref: XAO:0003001 xref: ZFA:0001512 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000481 name: multi-tissue structure namespace: uberon alt_id: UBERON:CARO_0000055-FBbt_00007010-XAO_0003037-ZFA_0001488 def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010048 xref: AEO:0000055 xref: BILA:0000055 xref: CARO:0000055 xref: EHDAA2:0003055 xref: FBbt:00007010 xref: HAO:0000055 xref: TAO:0001488 xref: TGMA:0001847 xref: XAO:0003037 xref: ZFA:0001488 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000482 name: basal lamina namespace: uberon alt_id: UBERON:CARO_0000065-FMA_62918-ZFA_0001485 def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [CARO:MAH, Wikipedia:Basal_lamina] comment: TODO - use GO. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "basal lamina of connective tissue" EXACT [] xref: AAO:0010269 xref: AEO:0000065 xref: BILA:0000065 xref: CARO:0000065 xref: EHDAA2:0003065 xref: FMA:62918 xref: GO:0005605 xref: HAO:0000065 xref: MESH:A.10.272.220 xref: NIF_Subcellular:sao1397492660 xref: TAO:0001485 xref: TGMA:0001850 xref: WBbt:0005756 xref: XAO:0003163 xref: ZFA:0001485 xref: ncithesaurus:Basal_Lamina is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0000483 name: epithelium namespace: uberon alt_id: UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486 def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "epithelial tissue" EXACT [] synonym: "portion of epithelium" EXACT [FMA:9639] xref: AAO:0000144 xref: AAO:0010055 xref: AEO:0000066 xref: BILA:0000066 xref: BTO:0000416 xref: CARO:0000066 xref: EHDAA2:0003066 xref: FBbt:00007005 xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 xref: MESH:A.10.272 xref: SCTID:31610004 xref: TAO:0001486 xref: VHOG:0000387 xref: XAO:0003045 xref: ZFA:0001486 xref: ncithesaurus:Epithelium is_a: UBERON:0000119 ! cell layer [Term] id: UBERON:0000484 name: simple cuboidal epithelium namespace: uberon alt_id: UBERON:CARO_0000067-FMA_45566-ZFA_0001497 def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "epithelium simplex cuboideum" EXACT [] xref: AAO:0010064 xref: AEO:0000067 xref: BILA:0000067 xref: CARO:0000067 xref: EHDAA2:0003067 xref: FMA:45566 xref: HAO:0000067 xref: TAO:0001497 xref: XAO:0004009 xref: ZFA:0001497 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray1133.png/200px-Gray1133.png xref: ncithesaurus:Simple_Cuboidal_Epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010077 ! cuboidal epithelium [Term] id: UBERON:0000485 name: simple columnar epithelium namespace: uberon alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496 def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Simple_columnar_epithelium] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "columnar epithlium" EXACT [AEO:0000068] synonym: "epithelium simplex columnare" EXACT [] synonym: "simple columnar epithelium" EXACT [] xref: AAO:0010063 xref: AEO:0000068 xref: BILA:0000068 xref: CARO:0000068 xref: FBbt:00007027 xref: FMA:45567 xref: HAO:0000068 xref: TAO:0001496 xref: XAO:0004008 xref: ZFA:0001496 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray1059.png/200px-Gray1059.png xref: ncithesaurus:Simple_Columnar_Epithelium is_a: UBERON:0000490 ! unilaminar epithelium [Term] id: UBERON:0000486 name: multilaminar epithelium namespace: uberon alt_id: UBERON:CARO_0000069-FMA_45562-ZFA_0001494 def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Stratified_epithelium] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "laminated epithelium" RELATED [BTO:0002074] synonym: "stratified epithelium" EXACT [] xref: AAO:0010059 xref: AEO:0000069 xref: BILA:0000069 xref: BTO:0002074 xref: CARO:0000069 xref: EHDAA2:0003069 xref: FMA:45562 xref: HAO:0000069 xref: SCTID:309044005 xref: TAO:0001494 xref: XAO:0004006 xref: ZFA:0001494 xref: ncithesaurus:Stratified_Epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000487 name: simple squamous epithelium namespace: uberon alt_id: UBERON:CARO_0000070-FMA_45565-ZFA_0001498 def: "Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA]" [CARO:MAH, FMA:45565, Wikipedia:Simple_squamous_epithelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "epithelium simplex squamosum" EXACT [] xref: AAO:0010066 xref: AEO:0000070 xref: BILA:0000070 xref: BTO:0002073 xref: CARO:0000070 xref: EHDAA2:0003070 xref: FMA:45565 xref: HAO:0000070 xref: TAO:0001498 xref: XAO:0004010 xref: ZFA:0001498 xref: ncithesaurus:Simple_Squamous_Epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0006914 ! squamous epithelium [Term] id: UBERON:0000488 name: atypical epithelium namespace: uberon alt_id: UBERON:CARO_0000071-FMA_61741-ZFA_0001493 def: "Epithelium that consists of epithelial cells not arranged in one ore more layers." [CARO:MAH] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "heterogenous epithelium" EXACT [] xref: AAO:0010057 xref: AEO:0000071 xref: BILA:0000071 xref: CARO:0000071 xref: EHDAA2:0003071 xref: FMA:61741 xref: HAO:0000071 xref: TAO:0001493 xref: XAO:0004004 xref: ZFA:0001493 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000489 name: cavitated compound organ namespace: uberon alt_id: UBERON:CARO_0000072-ZFA_0001490 def: "Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010016 xref: AEO:0000072 xref: BILA:0000072 xref: CARO:0000072 xref: EHDAA2:0003072 xref: HAO:0000072 xref: TAO:0001490 xref: TGMA:0001857 xref: XAO:0003165 xref: ZFA:0001490 is_a: UBERON:0003103 ! compound organ [Term] id: UBERON:0000490 name: unilaminar epithelium namespace: uberon alt_id: UBERON:CARO_0000073-FMA_45561-ZFA_0001495 def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]" [CARO:MAH, FMA:45561] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "simple epithelium" EXACT [] xref: AAO:0010062 xref: AEO:0000073 xref: BILA:0000073 xref: BTO:0002073 xref: CARO:0000073 xref: EHDAA2:0003073 xref: FMA:45561 xref: HAO:0000073 xref: SCTID:309043004 xref: TAO:0001495 xref: XAO:0004007 xref: ZFA:0001495 xref: ncithesaurus:Simple_Epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000491 name: solid compound organ namespace: uberon alt_id: UBERON:CARO_0000074-ZFA_0001491 def: "Compound organ that does not contain macroscopic anatomical spaces." [CARO:MAH] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010019 xref: AEO:0000074 xref: BILA:0000074 xref: CARO:0000074 xref: EHDAA2:0003074 xref: HAO:0000074 xref: TAO:0001491 xref: TGMA:0001859 xref: XAO:0003164 xref: ZFA:0001491 is_a: UBERON:0003103 ! compound organ [Term] id: UBERON:0000569 name: ileocecal valve namespace: uberon def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [Wikipedia:Ileocecal_valve] synonym: "Tulp's valve" RELATED [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973] xref: FMA:15973 xref: SCTID:362153007 xref: galen:IleocecalValve xref: ncithesaurus:Ileocecal_Valve is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003978 ! valve is_a: UBERON:0004590 ! sphincter muscle relationship: part_of UBERON:0001073 ! ileocecal junction [Term] id: UBERON:0000642 name: suspensory ligament of duodenum namespace: uberon def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum] comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] synonym: "musculus suspensorius duodeni" EXACT [FMA:20509] synonym: "suspensory muscle of duodenum" EXACT [FMA:20509] xref: FMA:20509 xref: SCTID:279979000 is_a: UBERON:0008841 ! suspensory ligament [Term] id: UBERON:0000711 name: splenius capitis namespace: uberon def: "The splenius capitis is a broad, straplike muscle in the back of the neck. It pulls on the base of the skull from vertebrae in the neck and upper thorax. It arises from the lower half of the ligamentum nuchC&, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebrC&. The fibers of the muscle are directed upward and lateralward and are inserted, under cover of the Sternocleidomastoideus, into the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line. The Splenius Capitis muscle is innervated by the dorsal rami of spinal nerves C3-C4. The splenius muscle is a prime mover for head extension. The splenius capitis can also allow lateral flexion and rotation of the cervical spine." [Wikipedia:Splenius_capitis_muscle] synonym: "splenius capitis muscle" EXACT [Wikipedia:Splenius_capitis_muscle] xref: FMA:22653 xref: SCTID:244850004 is_a: UBERON:0002252 ! splenius [Term] id: UBERON:0000908 name: hippocampal commissure namespace: uberon alt_id: UBERON:Commissure-MA_0002723 def: "The lateral portions of the body of the fornix are joined by a thin triangular lamina, named the psalterium (lyra). This lamina contains some transverse fibers that connect the two hippocampi across the middle line and constitute the commissure of fornix (hippocampal commissure)." [Wikipedia:Hippocampal_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "commissura hippocampi" EXACT [FMA:61970, FMA:TA] synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix] synonym: "commissure of fornix of forebrain" EXACT [FMA:61970] synonym: "delta fornicis" EXACT [MP:0008221] synonym: "dorsal hippocampal commissure" EXACT [FMA:61970] synonym: "fornical commissure" EXACT [FMA:61970] synonym: "fornix commissure" EXACT [FMA:61970] synonym: "hippocampus commissure" EXACT [MP:0008221] xref: FMA:61970 xref: MA:0002723 xref: NIF_GrossAnatomy:birnlex_746 xref: SCTID:369115003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0005340 ! dorsal telencephalic commissure is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0002316 ! white matter relationship: part_of UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0000910 name: chyme namespace: uberon alt_id: UBERON:ENVO_02000026-FMA_62961 def: "Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes." [Wikipedia:Chyme] synonym: "chymus" EXACT [ENVO:02000026] xref: ENVO:02000026 xref: FMA:62961 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000911 name: chyle namespace: uberon alt_id: UBERON:ENVO_02000030-FMA_61403 def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [Wikipedia:Chyle, http://wordnet.princeton.edu/perl/webwn?s=chyle] xref: ENVO:02000030 xref: FMA:61403 xref: GAID:1187 xref: MESH:A.12.207.630.350 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000912 name: mucus namespace: uberon alt_id: UBERON:ENVO_02000040-FMA_66938 def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus] xref: ENVO:02000040 xref: FMA:66938 xref: GAID:1164 xref: MESH:A.12.200.503 xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA xref: galen:Mucus xref: ncithesaurus:Mucus is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0000913 name: interstitial fluid namespace: uberon alt_id: UBERON:ENVO_02000042-FMA_9673 def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [FMA:9673, Wikipedia:Interstitial_fluid] synonym: "intercellular fluid" EXACT [ENVO:02000042] synonym: "tissue fluid" EXACT [ENVO:02000042] xref: ENVO:02000042 xref: FMA:9673 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000914 name: organismal segment namespace: uberon alt_id: UBERON:FBbt_00000003-FMA_11367-MIAA_0000271 def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segmentation_(biology)] comment: editor note: review this post-CARO2 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "segment" EXACT [FBbt:00000003] xref: FBbt:00000003 xref: HAO:0000929 xref: MAT:0000271 xref: MIAA:0000271 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000915 name: thoracic segment of trunk namespace: uberon alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 def: "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] comment: todo - taxonomic constraints. Originally this was defined loosely to include insect thorax but the value of such a high-level grouping class is dubious. Note that FMA distinsguishes between thorax and thoracic region of trunk subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "thorax" RELATED [MA:0000022] synonym: "upper body" RELATED [] xref: FMA:259209 xref: MA:0000022 xref: SCTID:302551006 is_a: UBERON:0009569 ! subdivision of trunk property_value: "spatially_disjoint_from" UBERON:0000026 property_value: "spatially_disjoint_from" UBERON:0000033 property_value: "spatially_disjoint_from" UBERON:0002417 [Term] id: UBERON:0000916 name: abdomen namespace: uberon alt_id: UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298 def: "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen] comment: Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "abdominopelvic region" EXACT [FMA:9577] synonym: "abdominopelvis" EXACT [FMA:9577] synonym: "adult abdomen" RELATED [] synonym: "belly" RELATED [] xref: BTO:0000020 xref: EFO:0000968 xref: EV:0100011 xref: FMA:9577 xref: GAID:16 xref: MA:0000029 xref: MAT:0000298 xref: MESH:A.01.047 xref: MIAA:0000298 xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA xref: SCTID:302553009 xref: galen:Abdomen is_a: UBERON:0009569 ! subdivision of trunk relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0000917 name: abdominal segment namespace: uberon alt_id: UBERON:FBbt_00000021-SPD_0000055 is_obsolete: true consider: UBERON:0002417 ! abdominal segment of trunk synonym: "segment of abdomen" EXACT [OBOL:automatic] xref: FBbt:00000021 xref: HAO:0000016 xref: SPD:0000055 [Term] id: UBERON:0000918 name: yolk namespace: uberon alt_id: UBERON:FBbt_00000035-MIAA_0000335-XAO_0000281 def: "The nutritive substance contained in the egg." [FB:gg] is_obsolete: true consider: GO:0060417 consider: UBERON:0007378 ! egg yolk synonym: "vegetal yolk mass" BROAD [] synonym: "yolk cell" RELATED [] xref: BTO:0000371 xref: FBbt:00000035 xref: GO:0060417 xref: MAT:0000335 xref: MIAA:0000335 xref: TAO:0000084 xref: XAO:0000281 xref: ZFA:0000084 [Term] id: UBERON:0000919 name: lipid droplet namespace: uberon alt_id: UBERON:FBbt_00000037-FMA_62962 is_obsolete: true replaced_by: GO:0005811 xref: FBbt:00000037 xref: FMA:62962 xref: GO:0005811 [Term] id: UBERON:0000920 name: egg chorion namespace: uberon alt_id: UBERON:FBbt_00000038-FMA_80224-ZFA_0000329 alt_id: UBERON:FMA_18674-MA_0001715 def: "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [GO:0042600, Wikipedia:Chorion_(egg)] subset: dubious_grouping ! Indicates that subclasses in AOs may be inappropriately linked subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "chorion" RELATED [] synonym: "chorion (egg)" EXACT [] xref: FBbt:00000038 xref: TAO:0000329 xref: TGMA:0000681 xref: ZFA:0000329 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of CL:0000025 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! egg disjoint_from: UBERON:0003124 ! chorion [Term] id: UBERON:0000921 name: pronucleus namespace: uberon alt_id: UBERON:FBbt_00000048-FMA_84673 def: "." [Wikipedia:Pronucleus] is_obsolete: true replaced_by: GO:0045120 xref: FBbt:00000048 xref: FMA:84673 xref: GO:0045120 [Term] id: UBERON:0000922 name: embryo namespace: uberon alt_id: UBERON:FBbt_00000052-FMA_69068-MIAA_0000019-XAO_0000113 def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo] comment: Obsoleted in ZFA. Note that embryo is not classified as an embryonic structure - an embryonic structure is only the parts of an embryo subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "developing organism" RELATED [BILA:0000056] synonym: "developmental tissue" RELATED [] synonym: "embryonic organism" EXACT [BILA:0000056] xref: AAO:0011035 xref: AEO:0000169 xref: BILA:0000056 xref: BTO:0000379 xref: EFO:0001367 xref: EHDAA2:0003236 xref: EHDAA:38 xref: EMAPA:16039 xref: FBbt:00000052 xref: FMA:69068 xref: GAID:963 xref: MAT:0000226 xref: MESH:A.16.254 xref: MIAA:0000019 xref: OGEM:000001 xref: OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA xref: SCTID:57991002 xref: XAO:0000113 xref: ZFA:0000103 xref: ncithesaurus:Embryo is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000468 ! multi-cellular organism relationship: develops_from CL:0000365 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! zygote [Term] id: UBERON:0000923 name: germ layer namespace: uberon alt_id: UBERON:FBbt_00000110-FMA_69069 alt_id: UBERON:XAO_0003011-ZFA_0001122 def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer] comment: Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[RCN:2012] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "embryonic germ layer" RELATED [] synonym: "embryonic germ layers" RELATED [] synonym: "embryonic tissue" BROAD [FMA:69069] synonym: "germinal layer" EXACT [ncithesaurus:Germinal_Layer] synonym: "primary germ layer" NARROW [GO:0001704, ZFA:0001122] xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: FBbt:00000110 xref: FMA:69069 xref: GAID:1303 xref: MESH:A.16.254.425 xref: TAO:0001122 xref: VHOG:0001223 xref: XAO:0003011 xref: ZFA:0001122 xref: ncithesaurus:Embryonic_Tissue xref: ncithesaurus:Germinal_Layer is_a: UBERON:0000479 ! tissue is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0001048 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! primordium relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0000924 name: ectoderm namespace: uberon alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016 def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "embryonic ectoderm" EXACT [VHOG:0000153] xref: AAO:0000137 xref: BILA:0000036 xref: BTO:0000315 xref: EFO:0000414 xref: EHDAA2:0000428 xref: EMAPA:16069 xref: EV:0100003 xref: FBbt:00000111 xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 xref: MAT:0000173 xref: MESH:A.16.254.425.273 xref: MIAA:0000173 xref: SCTID:362851007 xref: TAO:0000016 xref: VHOG:0000153 xref: XAO:0000001 xref: ZFA:0000016 xref: ncithesaurus:Ectoderm is_a: UBERON:0000923 ! germ layer relationship: develops_from UBERON:0008781 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blastodisc derived epiblast [Term] id: UBERON:0000925 name: endoderm namespace: uberon alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017 def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "entoderm" RELATED [] xref: AAO:0000139 xref: BILA:0000038 xref: BTO:0000800 xref: EFO:0002545 xref: EHDAA2:0000436 xref: EV:0100005 xref: FBbt:00000125 xref: FMA:69071 xref: GAID:1305 xref: MAT:0000175 xref: MESH:A.16.254.425.407 xref: MIAA:0000175 xref: SCTID:362855003 xref: TAO:0000017 xref: VHOG:0000154 xref: XAO:0000090 xref: ZFA:0000017 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray10.png/200px-Gray10.png xref: ncithesaurus:Endoderm is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000926 name: mesoderm namespace: uberon alt_id: UBERON:0003263 alt_id: UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041 def: "The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm] comment: Taxon notes: sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[http://www.nature.com/nature/journal/v466/n7307/full/nature09201.html]. Mesoderm may not be homologous across verteberates[RCN:2012] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "entire mesoderm" RELATED [SCTID:362854004, UBERON:cjm] synonym: "mesodermal mantle" RELATED [] xref: AAO:0000304 xref: BILA:0000037 xref: BTO:0000839 xref: EFO:0001981 xref: EHDAA2:0001128 xref: EHDAA:124 xref: EHDAA:140 xref: EHDAA:154 xref: EHDAA:160 xref: EHDAA:168 xref: EHDAA:183 xref: EV:0100006 xref: FBbt:00000126 xref: FMA:69072 xref: GAID:522 xref: MAT:0000174 xref: MESH:A.16.254.425.660 xref: MIAA:0000174 xref: SCTID:362854004 xref: TAO:0000041 xref: VHOG:0000152 xref: XAO:0000050 xref: ZFA:0000041 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Mesoderm.png/200px-Mesoderm.png xref: ncithesaurus:Mesoderm is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000927 name: mesectoderm namespace: uberon alt_id: UBERON:FBbt_00000136-MIAA_0000243 def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570] comment: Split term? The part of the mesenchyme derived from ectoderm, especially from the embryonic neural crest from which the pigment cells, meninges, and most of the branchial cartilages develop.[TFD] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "MesEc" RELATED [] xref: FBbt:00000136 xref: MAT:0000243 xref: MIAA:0000243 is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000928 name: embryonic segment namespace: uberon alt_id: UBERON:FBbt_00000154-MIAA_0000244 comment: This class was created automatically from a combination of ontologies synonym: "segment - embryonic" EXACT [] xref: FBbt:00000154 xref: MAT:0000244 xref: MIAA:0000244 is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0000929 name: pharyngeal branch namespace: uberon alt_id: UBERON:FBbt_00000394-FMA_6234 def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_branch_of_vagus_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [] synonym: "pharyngeal branch of vagus" EXACT [] synonym: "pharyngeal branch of vagus nerve" EXACT [] synonym: "ramus pharyngealis nervi vagalis" EXACT [] synonym: "ramus pharyngeus" EXACT [FMA:6234, FMA:TA] synonym: "tenth cranial nerve pharyngeal branch" EXACT [] synonym: "vagal pharyngeal branch" EXACT [] synonym: "vagus nerve pharyngeal branch" EXACT [] xref: FMA:6234 xref: SCTID:280298006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001005 ! respiratory airway relationship: part_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0000930 name: stomodeum namespace: uberon alt_id: UBERON:FBbt_00000439-ZFA_0001290 def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth[ZFA]. In humans, a depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland. The stomodeum is lined by ectoderm, and is separated from the anterior end of the fore-gut by the buccopharyngeal membrane. This membrane is devoid of mesoderm, being formed by the apposition of the stomodeal ectoderm with the fore-gut endoderm; at the end of the third week it disappears, and thus a communication is established between the mouth and the future pharynx[WP]. The anterior part of the embryonic digestive system deriving from the stomodeal invagination of the ectoderm[FBbt]." [Wikipedia:Stomodeum] comment: Editor note: consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence. Taxon note: This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity. subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mouth primordium" EXACT [XAO:0000269] synonym: "primitive oral cavity" EXACT [UBERON:cjm] synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum] synonym: "stomodaeum" EXACT [] xref: BTO:0004224 xref: EHDAA2:0001929 xref: EMAPA:16263 xref: FBbt:00000439 xref: TGMA:0000135 xref: XAO:0000269 xref: ZFA:0001290 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray977.png/200px-Gray977.png xref: ncithesaurus:Stomodeum is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0001048 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! primordium relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! primitive gut relationship: part_of UBERON:0001555 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive tract [Term] id: UBERON:0000931 name: proctodeum namespace: uberon alt_id: UBERON:FBbt_00000440-WBbt_0006795 def: "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage[ZFA]. A proctodeum is the back ectodermal part of an alimentary canal. It is created during embryogenesis by a folding of the outer body wall[WP]." [Wikipedia:Proctodeum] comment: removed WBbt:0006795 - junction between the alimentary and genital tracts in the male. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "proctodaeum" EXACT [] xref: AAO:0011087 xref: FBbt:00000440 xref: SCTID:298233001 xref: TAO:0000066 xref: VHOG:0000139 xref: XAO:0001019 xref: ZFA:0000066 xref: ncithesaurus:Proctodeum is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0007026 ! primitive gut relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ectoderm relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! digestive system relationship: part_of UBERON:0001555 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive tract [Term] id: UBERON:0000932 name: ventral longitudinal muscle namespace: uberon alt_id: UBERON:FBbt_00000482-WBbt_0005814 is_obsolete: true comment: originally unified on basis of terminological similarity xref: FBbt:00000482 xref: WBbt:0005814 [Term] id: UBERON:0000933 name: pharyngeal muscle namespace: uberon alt_id: UBERON:FBbt_00000487-FMA_46619-MA_0001797 def: "A muscle that forms part of the pharynx." [GO:0043282] comment: todo - add asserted children and check logical definition against these; e.g. is stylopharyngeus part of the pharynx? synonym: "muscle of pharynx" EXACT [] synonym: "muscle organ of pharynx" EXACT [OBOL:automatic] synonym: "musculus pharyngis" RELATED [BTO:0001048] synonym: "pharynx muscle" EXACT [] synonym: "pharynx muscle organ" EXACT [OBOL:automatic] xref: BTO:0001048 xref: FMA:46619 xref: GAID:154 xref: MA:0001797 xref: MESH:A.02.633.567.800 xref: SCTID:244798004 xref: ZFA:0000172 xref: ncithesaurus:Pharyngeal_Muscle is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0002376 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle of head relationship: part_of UBERON:0004467 ! musculature of pharynx relationship: part_of UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal arch 3-7 [Term] id: UBERON:0000934 name: ventral nerve cord namespace: uberon alt_id: UBERON:FBbt_00001102-MIAA_0000339-WBbt_0005829 def: "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." [BTO:0002328, GO:0007419, WB:Paper00000938, Wikipedia:Ventral_nerve_cord] comment: The ventral nerve cords make up the nervous system of some phyla of the invertebrates, particularly within the nematodes, annelids and the arthropods. It usually consists of cerebral ganglia anteriorly with the nerve cords running down the ventral ('belly', as opposed to back) plane of the organism. This characteristic is important in qualifying the difference compared to the chordates, which have a dorsal nerve cord. Ventral nerve cords from anterior to posterior (the thoracic and abdominal tagma in the arthropods) are made up of segmented ganglia that are connected by a tract of nerve fibers passing from one side to the other of the nerve cord called commissures. The complete system bears some likeness to a rope ladder. In some animals the bilateral ganglia are fused into a single large ganglion per segment. This characteristic is found mostly in the insects. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ventral cord" EXACT [GO:0007419] xref: BTO:0002328 xref: EFO:0000896 xref: FBbt:00001102 xref: MAT:0000339 xref: MIAA:0000339 xref: WBbt:0005829 is_a: UBERON:0005053 ! nerve cord is_a: UBERON:0000045 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ganglion relationship: develops_from UBERON:0002346 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! neurectoderm [Term] id: UBERON:0000935 name: anterior commissure namespace: uberon alt_id: UBERON:FBbt_00001105-FMA_61961-MA_0002722-ZFA_0001108 def: "bundle of nerve fibers (white matter), connecting the two cerebral hemispheres across the midline, and placed in front of the columns of the fornix. The great majority of fibers connecting the two hemispheres travel through the corpus callosum, which is over 10 times larger than the anterior commissure, and other routes of communication pass through the hippocampal commissure or, indirectly, via subcortical connections. Nevertheless, the anterior commissure is a significant pathway that can be clearly distinguished in the brains of all mammals." [Wikipedia:Anterior_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "commissura anterior" RELATED [] synonym: "commissura rostral" RELATED [] synonym: "commissura rostralis" EXACT [] synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure] synonym: "rostral commissure" RELATED [] xref: BM:Tel-AC xref: BTO:0002169 xref: EMAPA:19038 xref: FMA:61961 xref: MA:0002722 xref: NIF_GrossAnatomy:Class_4 xref: SCTID:369119009 xref: TAO:0001108 xref: ZFA:0001108 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray744.png/200px-Gray744.png xref: ncithesaurus:Anterior_Commissure is_a: UBERON:0002473 ! intercerebral commissure is_a: UBERON:0005341 ! ventral commissure [Term] id: UBERON:0000936 name: posterior commissure namespace: uberon alt_id: UBERON:FBbt_00001120-FMA_62072-MA_0002743-ZFA_0000320 def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP].Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [Wikipedia:Posterior_commissure, ZFA:0000320] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caudal commissure" EXACT [FMA:62072, ZFA:0000320] synonym: "epithalamic commissure" EXACT [FMA:62072] xref: BM:MB-Tec-PC xref: FMA:62072 xref: MA:0002743 xref: NIF_GrossAnatomy:birnlex_1026 xref: TAO:0000320 xref: ZFA:0000320 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png xref: ncithesaurus:Posterior_Commissure is_a: UBERON:0001020 ! commissure is_a: UBERON:0005970 ! brain commissure is_a: UBERON:0003544 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! brain white matter is_a: UBERON:0003931 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic white matter relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0000937 name: proneural cluster namespace: uberon alt_id: UBERON:FBbt_00001135-ZFA_0000068 is_obsolete: true comment: obsoleted because inconsistencies arise due to ZFA term being both embryonic and extraembryonic synonym: "proneural clusters" RELATED [ZFA:0000068] xref: FBbt:00001135 xref: ZFA:0000068 [Term] id: UBERON:0000939 name: imaginal disc namespace: uberon alt_id: UBERON:FBbt_00001761-MIAA_0000064 def: "A tissue in the larva which gives rise to the adult external cuticle." [FB:gg, Wikipedia:Imaginal_disc] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "imaginal disk" RELATED [] xref: BTO:0004658 xref: FBbt:00001761 xref: MAT:0000064 xref: MIAA:0000064 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0005423 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! developing anatomical structure [Term] id: UBERON:0000941 name: cranial nerve II namespace: uberon alt_id: UBERON:FBbt_00001956-FMA_50863-MA_0001097-XAO_0000188-ZFA_0000435 def: "Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFIN:curator] comment: AO notes: (relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon. Structure notes: We are consistent here with the FMA in considering CN-II continuous with the retina. Editor notes: - determine the precise relationship between CN II and the CNS subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "02 optic nerve" EXACT [AAO:0010345] synonym: "CN-II" RELATED [ZFA:0000435] synonym: "cranial II" EXACT [] synonym: "nervus opticus" EXACT [] synonym: "nervus opticus [II]" EXACT [FMA:50863, FMA:TA] synonym: "optic II" EXACT [EHDAA2:0001313] synonym: "optic II nerve" EXACT [EHDAA2:0001313] synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435] synonym: "optic nerve [II]" EXACT [] synonym: "second cranial nerve" EXACT [] xref: AAO:0010345 xref: EHDAA2:0001313 xref: EHDAA:6788 xref: EMAPA:17575 xref: EMAPA:17846 xref: FMA:50863 xref: GAID:831 xref: MA:0001097 xref: MESH:A.08.800.800.120.680 xref: NIF_GrossAnatomy:birnlex_1640 xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA xref: SCTID:180938001 xref: TAO:0000435 xref: VHOG:0000543 xref: XAO:0000188 xref: ZFA:0000435 xref: ncithesaurus:Optic_Nerve is_a: UBERON:0002464 ! nerve trunk is_a: UBERON:0004904 ! nerve connecting eye with brain relationship: part_of UBERON:0002104 ! visual system relationship: part_of UBERON:0003931 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic white matter [Term] id: UBERON:0000942 name: frontal nerve namespace: uberon alt_id: UBERON:FBbt_00002630-FMA_52638 def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebrC& superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:52638 xref: SCTID:280219004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/45/Gray787.png/200px-Gray787.png xref: ncithesaurus:Frontal_Nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0000943 name: labial sensillum namespace: uberon alt_id: UBERON:FBbt_00002721-WBbt_0005107 is_obsolete: true xref: FBbt:00002721 xref: WBbt:0005107 [Term] id: UBERON:0000944 name: dorsal branch namespace: uberon alt_id: UBERON:FBbt_00003051-FMA_76733 is_obsolete: true synonym: "dorsal vein" EXACT [] synonym: "ramus dorsalis" EXACT [FMA:76733, FMA:TA] xref: FBbt:00003051 xref: FMA:76733 [Term] id: UBERON:0000945 name: stomach namespace: uberon alt_id: UBERON:FBbt_00003138-FMA_7148-MA_0000353-MIAA_0000051-XAO_0000128 def: "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium." [ISBN10:0073040584, UBERON:cjm, Wikipedia:Stomach] comment: Taxon notes: We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa -- Stomach#In_other_animals subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior intestine" RELATED [] synonym: "gaster" RELATED [BTO:0001307] synonym: "mesenteron" RELATED [] synonym: "stomach" RELATED [] synonym: "ventriculus" RELATED [] xref: AAO:0000579 xref: ANISEED:1235297 xref: BTO:0001307 xref: EFO:0000837 xref: EHDAA2:0001915 xref: EHDAA:2993 xref: EMAPA:17021 xref: EMAPA:18889 xref: EV:0100070 xref: FMA:7148 xref: GAID:293 xref: MA:0000353 xref: MAT:0000051 xref: MESH:A.03.492.766 xref: MIAA:0000051 xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA xref: SCTID:181246003 xref: TAO:0002121 xref: VHOG:0000408 xref: XAO:0000128 xref: galen:Stomach xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Stomach_diagram.svg/200px-Stomach_diagram.svg.png xref: ncithesaurus:Stomach is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0010039 ! food storage organ is_a: UBERON:0005172 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! abdomen organ relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0002075 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! viscus [Term] id: UBERON:0000946 name: cardial valve namespace: uberon alt_id: UBERON:FBbt_00003140-FMA_7110-MA_0000086-ZFA_0005065 def: "Flap of tissue that prevents regurgitation of blood from the ventricles to the atria or from the pulmonary arteries or aorta to the ventricles." [Wikipedia:Cardiac_valve] comment: Terminology notes: Rector et al: One might be tempted to define bheart valveb equivalently to bvalve in the heartb, and bvalveb as a bstructure which functions as a valveb. But this combination results in the bforamen ovaleb being classified as a kind of bheart valveb, since it is undoubtedly located in the heart and functions as a valve subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac valve" RELATED [] synonym: "heart valve" EXACT [] synonym: "heart valves" RELATED [] synonym: "stomodaeal valve" RELATED [] synonym: "valve of heart" EXACT [] xref: BTO:0000564 xref: EMAPA:17869 xref: EV:0100024 xref: FMA:7110 xref: GAID:176 xref: MA:0000086 xref: MESH:A.07.541.510 xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA xref: SCTID:181285005 xref: TAO:0005065 xref: VHOG:0000818 xref: XAO:0004126 xref: ZFA:0005065 xref: galen:HeartValve xref: ncithesaurus:Cardiac_Valve is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000948 ! heart disjoint_from: UBERON:0004754 ! foramen ovale of heart [Term] id: UBERON:0000947 name: aorta namespace: uberon alt_id: UBERON:FBbt_00003153-FMA_3734-MA_0000062-MA_0000476-MIAA_0000035-XAO_0003010-ZFA_0000014 def: "Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [Wikipedia:Aorta] comment: Editor notes: This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae. Taxon notes: All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches[WP]. subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal aorta" NARROW SENSU [Wikipedia:Aorta#In_other_animals, ZFA:0000014] synonym: "trunk of aortic tree" EXACT [] synonym: "trunk of systemic arterial tree" EXACT [] xref: AAO:0010213 xref: BTO:0000135 xref: EFO:0000265 xref: EMAPA:18601 xref: EV:0100027 xref: FMA:3734 xref: GAID:469 xref: MA:0000062 xref: MAT:0000035 xref: MESH:A.07.231.114.056 xref: MIAA:0000035 xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA xref: SCTID:181298001 xref: VHOG:0001523 xref: XAO:0003010 xref: galen:Aorta xref: ncithesaurus:Aorta is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0003473 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! thoracic cavity artery relationship: part_of UBERON:0004571 ! systemic arterial system relationship: part_of UBERON:0010191 ! aortic system [Term] id: UBERON:0000948 name: heart namespace: uberon alt_id: UBERON:FBbt_00003154-FMA_7088-MA_0000072-MIAA_0000036-XAO_0000064-ZFA_0000114 def: "a myogenic muscular organ found in the cardiovascular system. It is responsible for pumping blood throughout the blood vessels by repeated, rhythmic contractions. The vertebrate heart is composed of cardiac muscle, which is an involuntary striated muscle tissue found only in this organ, and connective tissue. Primitive fish have a four-chambered heart; however, the chambers are arranged sequentially so that this primitive heart is quite unlike the four-chambered hearts of mammals and birds. The first chamber is the sinus venosus, which collects de-oxygenated blood, from the body, through the hepatic and cardinal veins. From here, blood flows into the atrium and then to the powerful muscular ventricle where the main pumping action takes place. The fourth and final chamber is the conus arteriosus which contains several valves and sends blood to the ventral aorta. The ventral aorta delivers blood to the gills where it is oxygenated and flows, through the dorsal aorta, into the rest of the body. (In tetrapods, the ventral aorta has divided in two; one half forms the ascending aorta, while the other forms the pulmonary artery. In the adult fish, the four chambers are not arranged in a straight row but, instead, form an S-shape with the latter two chambers lying above the former two. This relatively simpler pattern is found in cartilaginous fish and in the more primitive ray-finned fish. In teleosts, the conus arteriosus is very small and can more accurately be described as part of the aorta rather than of the heart proper. The conus arteriosus is not present in any amniotes which presumably having been absorbed into the ventricles over the course of evolution. Similarly, while the sinus venosus is present as a vestigial structure in some reptiles and birds, it is otherwise absorbed into the right atrium and is no longer distinguishable[WP]." [Wikipedia:Heart] comment: note that we use the term 'circulatory organ' for the generic class. Taxon notes:\" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepi- thelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)\" doi:10.1101/gad.1485706 subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Herz" RELATED [BTO:0000562] synonym: "chambered heart" EXACT [UBERON:cjm] synonym: "vertebrate heart" EXACT [] xref: AAO:0010210 xref: BILA:0000020 xref: BTO:0000562 xref: EFO:0000815 xref: EHDAA2:0000738 xref: EHDAA:420 xref: EMAPA:16105 xref: EV:0100018 xref: FMA:7088 xref: GAID:174 xref: MA:0000072 xref: MAT:0000036 xref: MESH:A.07.541 xref: MIAA:0000036 xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA xref: SCTID:302509004 xref: TAO:0000114 xref: VHOG:0000276 xref: XAO:0000064 xref: ZFA:0000114 xref: galen:Heart xref: ncithesaurus:Heart is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007100 ! circulatory organ relationship: part_of UBERON:0004535 ! cardiovascular system relationship: part_of UBERON:0002075 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! viscus relationship: part_of UBERON:0002100 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! trunk relationship: part_of UBERON:0002323 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! body cavity [Term] id: UBERON:0000949 name: endocrine system namespace: uberon alt_id: UBERON:FBbt_00003214-FBbt_00005068-FMA_9668-MA_0000012-XAO_0000158-ZFA_0001158 def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "endocrine glandular system" EXACT [EHDAA2:0002224] synonym: "endocrine system" EXACT [] synonym: "systema endocrinum" EXACT [] xref: AAO:0010279 xref: EFO:0002969 xref: EHDAA2:0002224 xref: EV:0100128 xref: FBbt:00005068 xref: FMA:9668 xref: GAID:439 xref: MA:0000012 xref: MESH:A.06 xref: SCTID:278876000 xref: TAO:0001158 xref: VHOG:0000098 xref: XAO:0000158 xref: ZFA:0001158 xref: ncithesaurus:Endocrine_System is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0000950 name: gracilis namespace: uberon alt_id: UBERON:FBbt_00003277-FMA_43882-MA_0002311 def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gracilis muscle" EXACT [BTO:0000536] xref: BTO:0000536 xref: FMA:43882 xref: MA:0002311 xref: OpenCyc:Mx4rv7If8pwpEbGdrcN5Y29ycA xref: SCTID:181689005 xref: galen:Gracilis xref: ncithesaurus:Gracilis is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0000951 name: rotator muscle namespace: uberon alt_id: UBERON:FBbt_00003314-FMA_23081 comment: This class was created automatically from a combination of ontologies xref: FMA:23081 xref: SCTID:244872002 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000952 name: adductor muscle namespace: uberon alt_id: UBERON:FBbt_00003317-FMA_74998 def: "Muscle that causes adduction can be called an adductor muscle. For example in biology, the muscle or muscles in the interior of a bivalve mollusk which serve to close the valves are called adductor muscles, and the large foot to shell muscle in gastropods such as the abalone and limpet is also known as an adductor muscle[WP]. A muscle that brings a body part closer to the sagittal plane of the body[ZFA, WikipediaLAdduction]." [Wikipedia:Adductor_muscle] comment: TODO - add functional xp definition. TODO - check MA. Note this is a structural relation in FMA subset: functional_classification ! functional_classification subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adductor" RELATED [] synonym: "adductor group (leg)" EXACT [MA:0002267] xref: BTO:0000030 xref: FBbt:00003317 xref: FMA:74998 xref: MA:0002267 xref: SCTID:181670005 xref: ZFA:0005268 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0001134 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! skeletal muscle tissue [Term] id: UBERON:0000953 name: visceral muscle namespace: uberon alt_id: UBERON:FBbt_00003525-MIAA_0000303-XAO_0000175 def: "involuntary non-striated muscle." [Wikipedia:Smooth_muscle] is_obsolete: true comment: terminological note: GO uses visceral and smooth interchangeably synonym: "adult visceral muscle" RELATED [] synonym: "smooth muscle" EXACT [] [Term] id: UBERON:0000954 name: intestine muscle namespace: uberon alt_id: UBERON:FBbt_00003537-WBbt_0005796 def: "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653] is_obsolete: true subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intestinal muscle" EXACT [] xref: BTO:0000643 xref: FBbt:00003537 xref: WBbt:0005796 [Term] id: UBERON:0000955 name: brain namespace: uberon alt_id: UBERON:FBbt_00003624-FBbt_00005095-FMA_50801-MA_0000168-MIAA_0000098-MIAA_0000341-WBbt_0005440-XAO_0000010-ZFA_0000008 def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals.[1] Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [Wikipedia:Brain] comment: include synganglion? subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "encephalon" RELATED [BTO:0000142] synonym: "synganglion" RELATED [] xref: AAO:0010478 xref: ABA:Brain xref: BILA:0000135 xref: BTO:0000142 xref: EFO:0000302 xref: EHDAA2:0000183 xref: EHDAA:2641 xref: EHDAA:6485 xref: EMAPA:16894 xref: EV:0100164 xref: FBbt:00005095 xref: FMA:50801 xref: GAID:571 xref: MA:0000168 xref: MAT:0000098 xref: MESH:A.08.186.211 xref: MIAA:0000098 xref: NIF_GrossAnatomy:birnlex_796 xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA xref: SCTID:258335003 xref: TAO:0000008 xref: VHOG:0000157 xref: XAO:0000010 xref: ZFA:0000008 xref: galen:Brain xref: ncithesaurus:Brain is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0001049 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural tube [Term] id: UBERON:0000956 name: cerebral cortex namespace: uberon alt_id: UBERON:FBbt_00003625-FMA_61830-MA_0000185-MIAA_0000108 def: "The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2b4 mm (0.08b0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted]." [Wikipedia:Cerebral_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brain cortex" RELATED [BTO:0000233] synonym: "cortex of cerebral hemisphere" EXACT [] synonym: "pallium of the brain" RELATED [BTO:0000233] xref: ABA:CTX xref: BM:Tel-Cx xref: BTO:0000233 xref: EFO:0000328 xref: EHDAA2:0000234 xref: EHDAA:5464 xref: EMAPA:17544 xref: EV:0100166 xref: FMA:61830 xref: GAID:629 xref: MA:0000185 xref: MAT:0000108 xref: MESH:A.08.186.211.730.885.213 xref: MIAA:0000108 xref: NIF_GrossAnatomy:birnlex_1494 xref: SCTID:362880003 xref: VHOG:0000722 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Cerebral_Cortex_location.jpg/200px-Cerebral_Cortex_location.jpg xref: ncithesaurus:Cortex is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000203 ! pallium relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0000957 name: lamina namespace: uberon alt_id: UBERON:FBbt_00003708-FMA_67265 def: "Any thin layer or plate." [Wikipedia:Lamina] comment: TODO - merge with cell layer? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0000958 name: medulla namespace: uberon alt_id: UBERON:FBbt_00003748-FMA_61108 def: "Middle part of an organ (as opposed to the cortex)[WP]." [Wikipedia:Medulla] comment: This class is used in a very general sense subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BM:Me xref: FMA:61108 xref: galen:Medulla is_a: UBERON:0000471 ! compound organ component [Term] id: UBERON:0000959 name: optic chiasma namespace: uberon alt_id: UBERON:FBbt_00003921-FMA_62045-MA_0001098-ZFA_0000556 def: "Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts.[FMA]" [FMA:FMA, Wikipedia:Optic_chiasma, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "chiasma opticum" EXACT [FMA:62045, FMA:TA] synonym: "decussation of optic nerve fibers" EXACT [] synonym: "optic chiasm" EXACT [] xref: AAO:0010622 xref: BM:Tel-OCX xref: EHDAA2:0001302 xref: EHDAA:10227 xref: EMAPA:17603 xref: FMA:62045 xref: GAID:832 xref: MA:0001098 xref: MESH:A.08.800.800.120.680.600 xref: NIF_GrossAnatomy:birnlex_1416 xref: SCTID:244453006 xref: TAO:0000556 xref: VHOG:0000190 xref: XAO:0004071 xref: ZFA:0000556 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/1543%2CVisalius%27OpticChiasma.jpg/200px-1543%2CVisalius%27OpticChiasma.jpg is_a: UBERON:0002464 ! nerve trunk is_a: UBERON:0003931 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic white matter relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0000960 name: pharyngeal nerve namespace: uberon alt_id: UBERON:FBbt_00004021-FMA_77524-WBbt_0005441 def: "OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]." [Wikipedia:Pharyngeal_nerve] is_obsolete: true subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FBbt:00004021 xref: FMA:77524 xref: WBbt:0005441 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray780.png/200px-Gray780.png [Term] id: UBERON:0000961 name: thoracic ganglion namespace: uberon alt_id: UBERON:FBbt_00004052-FMA_6471-MA_0001159 def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [Wikipedia:Thoracic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion thoracicum splanchnicum" EXACT [FMA:6471, FMA:TA] synonym: "thoracic paravertebral ganglion" EXACT [] synonym: "thoracic splanchnic ganglion" EXACT [] synonym: "thoracic sympathetic ganglion" EXACT [] synonym: "thorax ganglion" EXACT [OBOL:automatic] xref: BTO:0001831 xref: EHDAA:4664 xref: EMAPA:17158 xref: FMA:6471 xref: MA:0001159 xref: RETIRED_EHDAA2:0002012 xref: SCTID:181102004 xref: VHOG:0000515 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray849.png/200px-Gray849.png xref: ncithesaurus:Thoracic_Ganglion is_a: UBERON:0001807 ! paravertebral ganglion [Term] id: UBERON:0000962 name: cervical nerve namespace: uberon alt_id: UBERON:FBbt_00004053-FMA_5859 def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. ) Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cervical nerve tree" EXACT [] synonym: "cervical spinal nerve" EXACT [] xref: FMA:5859 xref: NIF_GrossAnatomy:nlx_anat_20090207 xref: SCTID:360497008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray795.png/200px-Gray795.png xref: ncithesaurus:Cervical_Nerve is_a: UBERON:0001780 ! spinal nerve is_a: UBERON:0003439 ! trunk nerve relationship: part_of UBERON:0000961 ! thoracic ganglion [Term] id: UBERON:0000963 name: head sensillum namespace: uberon alt_id: UBERON:FBbt_00004114-MIAA_0000204 comment: This class was created automatically from a combination of ontologies xref: FBbt:00004114 xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0000033 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! head [Term] id: UBERON:0000964 name: cornea namespace: uberon alt_id: UBERON:FBbt_00004191-FMA_58238-MA_0000266-XAO_0000180-ZFA_0000640 def: "transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power." [Wikipedia:Cornea] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "tunica cornea" RELATED [] xref: AAO:0010344 xref: BTO:0000286 xref: EFO:0000377 xref: EHDAA2:0000316 xref: EHDAA:10199 xref: EMAPA:17161 xref: EV:0100341 xref: FMA:58238 xref: GAID:892 xref: MA:0000266 xref: MESH:A.09.371.060.217 xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA xref: SCTID:181162001 xref: TAO:0000640 xref: VHOG:0000164 xref: XAO:0000180 xref: ZFA:0000640 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Cornea is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0000965 name: lens of camera-type eye namespace: uberon alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035 def: "Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)] comment: Taxon notes: This class excludes compound eye corneal lenses. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "camera-type eye lens" EXACT [GO:0002088] synonym: "crystalline lens" RELATED [BTO:0000723] synonym: "eye lens" EXACT SENSU [] synonym: "lens" EXACT SENSU [] synonym: "lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29] synonym: "ocular lens" RELATED [BTO:0000723] xref: AAO:0010348 xref: BTO:0000723 xref: EHDAA:9057 xref: EMAPA:17838 xref: EV:0100343 xref: FMA:58241 xref: MA:0000275 xref: MAT:0000141 xref: MESH:A.09.371.509 xref: MIAA:0000141 xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0000975 xref: SCTID:181169005 xref: TAO:0000035 xref: VHOG:0000169 xref: XAO:0000008 xref: ZFA:0000035 xref: ncithesaurus:Crystalline_Lens is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005389 ! transparent eye structure relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0000966 name: retina namespace: uberon alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152 def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator] comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Netzhaut" RELATED [BTO:0001175] synonym: "inner layer of eyeball" EXACT [] synonym: "tunica interna of eyeball" EXACT [] xref: AAO:0010352 xref: BTO:0001175 xref: EFO:0000832 xref: EHDAA2:0001627 xref: EHDAA:4757 xref: EMAPA:17168 xref: EV:0100348 xref: FMA:58301 xref: GAID:755 xref: MA:0000276 xref: MAT:0000142 xref: MESH:A.09.371.729 xref: MIAA:0000142 xref: NIF_GrossAnatomy:birnlex_1153 xref: NIF_GrossAnatomy:birnlex_1156 xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA xref: SCTID:181171005 xref: TAO:0000152 xref: VHOG:0000229 xref: XAO:0000009 xref: ZFA:0000152 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png xref: ncithesaurus:Retina is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005388 ! photoreceptor array relationship: part_of UBERON:0001802 ! posterior segment of eyeball relationship: part_of UBERON:0005743 ! central nervous system plus retina [Term] id: UBERON:0000967 name: adult thoracic sensillum namespace: uberon alt_id: UBERON:FBbt_00004245-MIAA_0000205 def: "An arthropod sensillum that is part of a thorax [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arthropod sensillum of thorax" EXACT [OBOL:automatic] synonym: "sensillum of thorax" EXACT [OBOL:automatic] synonym: "thoracic sensillum" EXACT [] synonym: "thorax arthropod sensillum" EXACT [OBOL:automatic] synonym: "thorax sensillum" EXACT [OBOL:automatic] xref: FBbt:00004245 xref: MAT:0000205 xref: MIAA:0000205 is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:0005181 ! thoracic segment organ relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0000968 name: adult abdominal sensillum namespace: uberon alt_id: UBERON:FBbt_00004461-MIAA_0000206 comment: This class was created automatically from a combination of ontologies synonym: "abdomen arthropod sensillum" EXACT [OBOL:automatic] synonym: "abdomen sensillum" EXACT [OBOL:automatic] synonym: "abdominal sensillum" EXACT [] synonym: "arthropod sensillum of abdomen" EXACT [OBOL:automatic] synonym: "sensillum of abdomen" EXACT [OBOL:automatic] xref: FBbt:00004461 xref: MAT:0000206 xref: MIAA:0000206 is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0000969 name: joint connecting hardened body parts namespace: uberon alt_id: UBERON:FBbt_00004479-FMA_7493-MA_0001475 xref: HAO:0000982 xref: OpenCyc:Mx4rwP1TTZwpEbGdrcN5Y29ycA is_a: UBERON:0004905 ! joint [Term] id: UBERON:0000970 name: eye namespace: uberon alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107 def: "An organ that detects light." [UBERON:cjm, Wikipedia:Eye, http://en.wikipedia.org/wiki/Eye] comment: Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva, subset: functional_classification ! functional_classification subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "light-detecting organ" RELATED [] synonym: "photoreceptor" BROAD [] synonym: "visual apparatus" RELATED [EV:0100336] xref: BILA:0000017 xref: BTO:0000439 xref: EFO:0000827 xref: EV:0100336 xref: FBbt:00005162 xref: GAID:69 xref: MAT:0000140 xref: MESH:A.01.456.505.420 xref: MIAA:0000140 xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0000971 name: ommatidium namespace: uberon alt_id: UBERON:FBbt_00004510-MIAA_0000143 def: "One of the small facets of the compound eye." [ISBN:3110148986, Wikipedia:Ommatidium] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "omatidium" EXACT [] xref: BTO:0001922 xref: FBbt:00004510 xref: HAO:0000666 xref: MAT:0000143 xref: MIAA:0000143 is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:0000963 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! head sensillum relationship: part_of UBERON:0000018 ! compound eye relationship: part_of UBERON:0005388 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! photoreceptor array [Term] id: UBERON:0000972 name: antenna namespace: uberon alt_id: UBERON:FBbt_00004511-MIAA_0000086 def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, ISBN:3110148986, Wikipedia:Antenna_(biology)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "feeler" RELATED [BTO:0000074] xref: AEO:0000198 xref: BTO:0000074 xref: EFO:0000874 xref: FBbt:00004511 xref: HAO:0000101 xref: MAT:0000086 xref: MIAA:0000086 xref: OpenCyc:Mx4rvVjSAZwpEbGdrcN5Y29ycA xref: TGMA:0000007 is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0000973 name: labrum namespace: uberon alt_id: UBERON:FBbt_00004522-FMA_76808 is_obsolete: true [Term] id: UBERON:0000974 name: neck namespace: uberon alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297 def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck] comment: TODO - generic definition subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AEO:0000108 xref: BTO:0000420 xref: EFO:0000967 xref: EHDAA2:0003108 xref: FMA:7155 xref: GAID:86 xref: MA:0000024 xref: MAT:0000297 xref: MESH:A.01.598 xref: MIAA:0000297 xref: OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA xref: SCTID:302550007 xref: galen:Neck xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg xref: ncithesaurus:Neck is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000153 ! anterior region of body relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0000975 name: sternum namespace: uberon alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331 def: "The sternum or breastbone, in vertebrate anatomy, is a flat bone. It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life." [ISBN:3110148986, Wikipedia:Sternum] comment: Editor note: in EMAPA this is part of the skeleton of pectoral girdle. Here we have a strict spatial disjointness condition between the thorax and appendages so we do not include this subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "breastbone" RELATED [BTO:0001302] synonym: "vertebrate sternum" EXACT [] xref: AAO:0000765 xref: BTO:0001302 xref: EHDAA2:0001914 xref: EHDAA:9561 xref: EMAPA:18344 xref: FMA:7485 xref: GAID:246 xref: MA:0001331 xref: MESH:A.02.835.232.904.766 xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA xref: SCTID:302522007 xref: VHOG:0000856 xref: galen:Sternum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg xref: ncithesaurus:Sternum is_a: UBERON:0001474 ! bone is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0007829 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pectoral girdle bone relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0000976 name: humerus namespace: uberon alt_id: UBERON:FBbt_00004562-FMA_13303-MA_0001356 def: "Paired long bones of endochondral origin that extend from the pectoral girdle to the elbows[AAO, modified]." [AAO:0000679, Wikipedia:Humerus] comment: homologous to proximal metapterygial mesomere [Hall 2007] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000679 xref: EFO:0001398 xref: EMAPA:18468 xref: EMAPA:19106 xref: FMA:13303 xref: GAID:183 xref: MA:0001356 xref: MESH:A.02.835.232.087.412 xref: SCTID:181923006 xref: VHOG:0001158 xref: XAO:0003210 xref: galen:Humerus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg xref: ncithesaurus:Humerus is_a: UBERON:0002495 ! long bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone is_a: UBERON:0002513 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endochondral bone is_a: UBERON:0003461 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! shoulder bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0000977 name: pleura namespace: uberon alt_id: UBERON:FBbt_00004591-FMA_9583-MA_0000433 def: "The delicate serous membrane that lines each half of the thorax of mammals and is folded back over the surface of the lung of the same side[BTO]." [Wikipedia:Pleura] comment: In mouse, is_a cavity lining. In FMA, is_a (viscous) serous membrane subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pleura" RELATED [] synonym: "pleural tissue" RELATED [BTO:0001791] synonym: "wall of pleural sac" EXACT [] xref: BTO:0001791 xref: EFO:0001980 xref: EV:0100044 xref: FMA:9583 xref: GAID:360 xref: MA:0000433 xref: MESH:A.04.716 xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA xref: SCTID:181609007 xref: VHOG:0000394 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png xref: ncithesaurus:Pleural_Tissue is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0009778 ! pleural sac [Term] id: UBERON:0000978 name: leg namespace: uberon alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095 def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb] comment: The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lower extremity" RELATED [MESH:A.01.378.610] synonym: "tetrapod leg" EXACT [] xref: BTO:0000721 xref: EFO:0001411 xref: EHDAA2:0000972 xref: EHDAA:5151 xref: EHDAA:6176 xref: EHDAA:8289 xref: EMAPA:17489 xref: GAID:49 xref: MA:0000047 xref: MESH:A.01.378.610 xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA xref: VHOG:0000345 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006058 ! multi-limb segment region relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0000979 name: tibia namespace: uberon alt_id: UBERON:FBbt_00004642-FMA_24476-MA_0001361 def: "Larger and stronger of the two bones in the leg below the knee in vertebrates and connects the knee with the ankle bones." [Wikipedia:Tibia] comment: Does not include the tibia segment of the arthropod leg FBbt:00004642 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "shankbone" EXACT [Wikipedia:Tibia] synonym: "shinbone" EXACT [Wikipedia:Tibia] xref: AAO:0000890 xref: BTO:0001252 xref: EFO:0003054 xref: EMAPA:18513 xref: EMAPA:19142 xref: FMA:24476 xref: GAID:204 xref: MA:0001361 xref: MESH:A.02.835.232.500.883 xref: OpenCyc:Mx4rvtq3-ZwpEbGdrcN5Y29ycA xref: SCTID:182061009 xref: galen:Tibia xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray260.png/200px-Gray260.png xref: ncithesaurus:Tibia is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! lower leg bone relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0000980 name: trochanter namespace: uberon alt_id: UBERON:FBbt_00004643-FMA_82513 def: "bony prominences near the upper extremity of the femur; there are two in human (greater and lesser trochanters) and three in many other mammalian species (greater, lesser and third); these normally serve as attachment points for hip and thigh muscles[MP]" [Wikipedia:Trochanter] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "femoral trochanter" EXACT [AAO:0000897] synonym: "trochanter of femur" EXACT [] xref: AAO:0000897 xref: FMA:82513 xref: MA:0002821 xref: SCTID:182047004 xref: ncithesaurus:Trochanter is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000981 ! femur [Term] id: UBERON:0000981 name: femur namespace: uberon alt_id: UBERON:FBbt_00004644-FMA_9611-MA_0001359 def: "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur] comment: homologous to proximal metapterygial mesomere [Hall 2007] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "femoral bone" RELATED [BTO:0001284] synonym: "os femorale" RELATED [BTO:0001284] synonym: "os femoris" RELATED [BTO:0001284] synonym: "thigh bone" EXACT [] xref: AAO:0000889 xref: BTO:0001284 xref: EFO:0001396 xref: EMAPA:18514 xref: EMAPA:19143 xref: FMA:9611 xref: GAID:199 xref: MA:0001359 xref: MESH:A.02.835.232.500.247 xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA xref: SCTID:182046008 xref: VHOG:0001159 xref: XAO:0003214 xref: galen:Femur xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray252.png/200px-Gray252.png xref: ncithesaurus:Femur is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 ! bone of hip region is_a: UBERON:0002513 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endochondral bone relationship: part_of UBERON:0000376 ! hindlimb stylopod relationship: part_of UBERON:0001441 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hindlimb skeleton [Term] id: UBERON:0000982 name: skeletal joint namespace: uberon alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596 def: "Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are interconnected by organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint." [FMA:7490, Wikipedia:Joint, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "articular joint" RELATED [BTO:0001686] synonym: "joint" BROAD [FMA:7490] xref: AEO:0000182 xref: BTO:0001686 xref: EFO:0000948 xref: EMAPA:19204 xref: FMA:7490 xref: GAID:102 xref: MA:0000319 xref: MAT:0000188 xref: MESH:A.02.835.583 xref: MIAA:0000188 xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0003182 xref: TAO:0000367 xref: VHOG:0001276 xref: XAO:0000171 xref: ZFA:0001596 xref: galen:Joint xref: ncithesaurus:Joint is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0004905 ! joint relationship: part_of UBERON:0004770 ! articular system [Term] id: UBERON:0000983 name: metatarsus namespace: uberon alt_id: UBERON:FBbt_00004648-FMA_24997-MA_0000049 def: "Limb segment that consists of the long bones of the foot. The metatarsals are analogous to the metacarpal bones of the hand." [Wikipedia:Metatarsus] comment: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hind metapodium" EXACT [AAO:0000221, MA:th, http://en.wiktionary.org/wiki/metapodial] synonym: "metatarsal part of foot" EXACT [] synonym: "metatarsal region" EXACT [] synonym: "regio metatarsalis" EXACT [FMA:24997, FMA:TA] xref: AAO:0000221 xref: FMA:24997 xref: GAID:43 xref: MA:0000049 xref: MESH:A.01.378.610.250.300.480 xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA xref: SCTID:280711000 xref: XAO:0003212 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png is_a: UBERON:0008784 ! lower limb segment is_a: UBERON:0009877 ! metapodium is_a: UBERON:0001474 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! bone relationship: part_of UBERON:0001441 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hindlimb skeleton [Term] id: UBERON:0000984 name: imaginal disc-derived wing namespace: uberon alt_id: UBERON:FBbt_00004729-MIAA_0000202 def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg] comment: TODO: review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adult mesothoracic wing" RELATED [] synonym: "adult metathoracic wing" RELATED [] synonym: "thoracic wing" RELATED [] synonym: "thorax wing" RELATED [OBOL:automatic] synonym: "wing" BROAD SENSU [FBbt:00004729] synonym: "wing of thorax" RELATED [OBOL:automatic] xref: FBbt:00004729 xref: HAO:0001089 xref: TGMA:0000196 is_a: UBERON:0000023 ! wing relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0000985 name: axillary vein namespace: uberon alt_id: UBERON:FBbt_00004754-FMA_13329-MA_0002084 def: "In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery. [WP,unvetted]." [Wikipedia:Axillary_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "subcostal vein" RELATED [] xref: EMAPA:18758 xref: FMA:13329 xref: GAID:527 xref: MA:0002084 xref: MESH:A.07.231.908.077 xref: OpenCyc:Mx4rwLSHK5wpEbGdrcN5Y29ycA xref: SCTID:181389002 xref: galen:AxillaryVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png xref: ncithesaurus:Axillary_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003233 ! epithelium of shoulder is_a: UBERON:0003515 ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0000987 name: haltere namespace: uberon alt_id: UBERON:FBbt_00004783-MIAA_0000203 def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, ISBN:3110148986, Wikipedia:Haltere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "balancer organ" RELATED [] xref: EFO:0000886 xref: FBbt:00004783 xref: MAT:0000203 xref: MIAA:0000203 xref: OpenCyc:Mx4rwL1JcJwpEbGdrcN5Y29ycA is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0000914 ! organismal segment relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0000988 name: pons namespace: uberon alt_id: UBERON:FBbt_00004840-FMA_67943-MA_0000204-MIAA_0000115-ZFA_0001618 def: "Brainstrem structure that has as its parts the pontine tegmentum and basal part of pons[FMA]." [FMA:67943, Wikipedia:Pons] comment: The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pons of Varolius" EXACT [] xref: ABA:P xref: BM:Pons xref: BTO:0001101 xref: EFO:0001394 xref: EHDAA2:0004394 xref: EMAPA:17563 xref: EV:0100253 xref: FMA:67943 xref: GAID:578 xref: MA:0000204 xref: MAT:0000115 xref: MESH:A.08.186.211.132.810.428.600 xref: MIAA:0000115 xref: NIF_GrossAnatomy:birnlex_733 xref: SCTID:279103004 xref: VHOG:0001176 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Gray768.png/200px-Gray768.png is_a: UBERON:0002680 ! regional part of metencephalon relationship: part_of UBERON:0001895 ! metencephalon relationship: part_of UBERON:0002298 ! brainstem property_value: "dubious_for_taxon" NCBITaxon:7955 property_value: "spatially_disjoint_from" UBERON:0001896 [Term] id: UBERON:0000989 name: penis namespace: uberon alt_id: UBERON:FBbt_00004852-FMA_9707-MA_0000408-MIAA_0000186 def: "The penis (plural penises, penes) is an external sexual organ of certain biologically male organisms, in both vertebrates and invertebrates. The penis is a reproductive organ, technically an intromittent organ, and for placental mammals, additionally serves as the external organ of urination. The penis is generally found on mammals and reptiles. [WP,unvetted]." [Wikipedia:Penis] comment: Most male birds (e.g., roosters and turkeys) have a cloaca (also present on the female), but not a penis. Among bird species with a penis are paleognathes (tinamous and ratites), Anatidae (ducks, geese and swans), and a very few other species (such as flamingoes). A bird penis is different in structure from mammal penises, being an erectile expansion of the cloacal wall and being erected by lymph, not blood. It is usually partially feathered and in some species features spines and brush-like filaments, and in flaccid state curls up inside the cloaca[WP] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "phallus" RELATED [] xref: BTO:0000405 xref: EFO:0000987 xref: EHDAA2:0001433 xref: EHDAA:9380 xref: EMAPA:18682 xref: EV:0100107 xref: FMA:9707 xref: GAID:389 xref: MA:0000408 xref: MAT:0000186 xref: MESH:A.05.360.444.492 xref: MIAA:0000186 xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA xref: SCTID:265793009 xref: VHOG:0000727 xref: galen:Penis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Labelled_flaccid_penis.jpg/200px-Labelled_flaccid_penis.jpg xref: ncithesaurus:Penis is_a: UBERON:0008811 ! intromittent organ [Term] id: UBERON:0000990 name: reproductive system namespace: uberon alt_id: UBERON:FBbt_00004857-FMA_7160-MA_0000326-MIAA_0000305-WBbt_0005747-XAO_0000142-ZFA_0000632 def: "Anatomical system that has as its parts the organs concerned with reproduction." [Wikipedia:Reproductive_system] comment: This class was created automatically from a combination of ontologies subset: functional_classification ! functional_classification subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Geschlechtsorgan" RELATED [BTO:0000081] synonym: "animal reproductive system" RELATED [BTO:0000081] synonym: "genital system" RELATED [] synonym: "genitalia" RELATED PLURAL [] synonym: "organa genitalia" RELATED [BTO:0000081] synonym: "reproductive tissue" RELATED [BTO:0000081] xref: AAO:0010258 xref: BILA:0000103 xref: BTO:0000081 xref: EFO:0000809 xref: EHDAA2:0001603 xref: EHDAA:5923 xref: EMAPA:17381 xref: EV:0100100 xref: FBbt:00004826 xref: FBbt:00004857 xref: FMA:7160 xref: GAID:363 xref: HAO:0000374 xref: HAO:0000895 xref: MA:0000326 xref: MIAA:0000305 xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA xref: SCTID:278875001 xref: TAO:0000632 xref: VHOG:0000182 xref: WBbt:0005747 xref: XAO:0000142 xref: ZFA:0000632 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Penis.svg/200px-Penis.svg.png xref: ncithesaurus:Reproductive_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0002075 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! viscus relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm relationship: develops_from UBERON:0005294 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! genital ridge relationship: part_of UBERON:0004122 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! genitourinary system relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0000991 name: gonad namespace: uberon alt_id: UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413 def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator] comment: FMA xref is a 'general anatomical term' subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "gonada" EXACT [] xref: AAO:0000213 xref: BILA:0000123 xref: BTO:0000534 xref: EMAPA:17383 xref: FBbt:00004858 xref: FMA:18250 xref: GAID:368 xref: HAO:0000379 xref: MA:0002420 xref: MESH:A.05.360.576 xref: OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA xref: SCTID:304623008 xref: TAO:0000413 xref: VHOG:0000397 xref: WBbt:0005175 xref: XAO:0003146 xref: ZFA:0000413 xref: ncithesaurus:Gonad is_a: UBERON:0003133 ! reproductive organ relationship: part_of UBERON:0000990 ! reproductive system relationship: part_of UBERON:0002323 ! body cavity relationship: part_of UBERON:0002100 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! trunk [Term] id: UBERON:0000992 name: female gonad namespace: uberon alt_id: UBERON:FBbt_00004865-FMA_7209-MA_0000384-MIAA_0000125-XAO_0000258-ZFA_0000403 def: "Ovum-producing female reproductive organ." [Wikipedia:Ovary] comment: Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[WP]. subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "female organism genitalia gonad" EXACT [OBOL:automatic] synonym: "female organism genitalia gonada" EXACT [OBOL:automatic] synonym: "female organism reproductive system gonad" EXACT [OBOL:automatic] synonym: "female organism reproductive system gonada" EXACT [OBOL:automatic] synonym: "female reproductive system gonad" EXACT [OBOL:automatic] synonym: "female reproductive system gonada" EXACT [OBOL:automatic] synonym: "genitalia of female organism gonad" EXACT [OBOL:automatic] synonym: "genitalia of female organism gonada" EXACT [OBOL:automatic] synonym: "gonad of female organism genitalia" EXACT [OBOL:automatic] synonym: "gonad of female organism reproductive system" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "gonad of genitalia of female organism" EXACT [OBOL:automatic] synonym: "gonad of reproductive system of female organism" EXACT [OBOL:automatic] synonym: "gonada of female organism genitalia" EXACT [OBOL:automatic] synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic] synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic] synonym: "ovaries" RELATED PLURAL [] synonym: "ovary" EXACT [] synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039] synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic] synonym: "reproductive system of female organism gonada" EXACT [OBOL:automatic] xref: AAO:0000371 xref: BILA:0000125 xref: BTO:0000975 xref: EHDAA2:0001360 xref: EHDAA:8124 xref: EMAPA:17962 xref: EV:0100111 xref: FBbt:00004865 xref: FMA:7209 xref: GAID:367 xref: MA:0000384 xref: MESH:A.05.360.319.114.630 xref: MIAA:0000125 xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA xref: SCTID:181464007 xref: TAO:0000403 xref: VHOG:0000251 xref: XAO:0000258 xref: ZFA:0000403 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: ncithesaurus:Ovary is_a: UBERON:0000991 ! gonad is_a: UBERON:0003134 ! female reproductive organ relationship: part_of UBERON:0000949 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! endocrine system disjoint_from: UBERON:0009117 ! indifferent gonad [Term] id: UBERON:0000993 name: oviduct namespace: uberon alt_id: UBERON:FBbt_00004911-FMA_18245-MA_0000385-MIAA_0000126-XAO_0003052-ZFA_0000560 def: "passage from the ovaries to the outside of the body[Wikipedia:Oviduct]." [Wikipedia:Oviduct] comment: note that the more specific class fallopian tube is included, which has mammal-specific relationships subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "salpinx" RELATED [BTO:0000980] synonym: "tuba uterina" RELATED [BTO:0000980] synonym: "tuba uterinae" RELATED [BTO:0000980] synonym: "uterine tube" RELATED [] xref: AAO:0010533 xref: BTO:0000980 xref: EFO:0000974 xref: EMAPA:18984 xref: GAID:366 xref: MAT:0000126 xref: MESH:A.13.706 xref: MIAA:0000126 xref: TAO:0000560 xref: VHOG:0001136 xref: XAO:0003052 xref: ZFA:0000560 xref: ncithesaurus:Oviduct is_a: UBERON:0000025 ! tube is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0000058 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! duct is_a: UBERON:0000058 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! duct relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000994 name: spermathecum namespace: uberon alt_id: UBERON:FBbt_00004921-MIAA_0000168-WBbt_0005319 def: "an organ of the female reproductive tract in insects, some molluscs, oligochaeta worms and certain other invertebrates and vertebrates.[1] Its purpose is to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready.[2] Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation.[3] They are lined with epithelium and are variable in shape; some are thin, heavily coiled tubes, others are vague outpocketings from the main reproductive tract. It is one of the many variations in sexual reproduction[WP]. an accordion-like tube that contains sperm and is the site of oocyte fertilization." [Wikipedia:Spermatheca] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "receptaculum seminis" RELATED [BTO:0001273] synonym: "seminal receptacle" RELATED [] synonym: "spermatheca" RELATED PLURAL [] xref: BTO:0001273 xref: EFO:0000977 xref: FBbt:00004921 xref: HAO:0000945 xref: MAT:0000168 xref: MIAA:0000168 xref: TGMA:0000560 xref: WBbt:0005319 is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0003914 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! epithelial tube relationship: part_of UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0000995 name: uterus namespace: uberon alt_id: UBERON:FBbt_00004924-FMA_17558-MA_0000389-MIAA_0000127-WBbt_0006760 def: "a major female hormone-responsive reproductive sex organ of most mammals including humans. One end, the cervix, opens into the vagina, while the other is connected to one or both fallopian tubes, depending on the species. It is within the uterus that the fetus develops during gestation, usually developing completely in placental mammals such as humans and partially in marsupials such as kangaroos and opossums. Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused[WP]." [Wikipedia:Uterus] comment: Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle \"vagina\" which functions as the birth canal. Marsupial embryos form a choriovitelline \"placenta\" (which can be thought of as something between a monotreme egg and a \"true\" placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream. subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "uterine horn" RELATED [] synonym: "uterine horns" RELATED [] synonym: "womb" RELATED [BTO:0001424] xref: BTO:0001424 xref: EFO:0000975 xref: EMAPA:29915 xref: EV:0100113 xref: FMA:17558 xref: GAID:172 xref: MA:0000389 xref: MAT:0000127 xref: MESH:A.05.360.319.679 xref: MIAA:0000127 xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA xref: SCTID:181452004 xref: VHOG:0001137 xref: galen:Uterus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: ncithesaurus:Uterus is_a: UBERON:0003975 ! internal female genitalia is_a: UBERON:0004175 ! internal reproductive organ relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000996 name: vagina namespace: uberon alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128 def: "a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina] comment: Taxon notes (via vHOG): \"The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria.\" Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000243 xref: EFO:0000976 xref: EMAPA:18986 xref: EV:0100117 xref: FMA:19949 xref: GAID:381 xref: MA:0000394 xref: MAT:0000128 xref: MESH:A.05.360.319.779 xref: MIAA:0000128 xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA xref: SCTID:181441005 xref: VHOG:0001138 xref: galen:Vagina xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg xref: ncithesaurus:Vagina is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003975 ! internal female genitalia relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000997 name: mammalian vulva namespace: uberon alt_id: UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748 def: "external genital organs of the female mammal[WP]." [Wikipedia:Vulva] comment: editor note: todo - add pudendum subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "female pudendum" EXACT [BTO:0003101, FMA:20462] synonym: "mammalian vulva" EXACT [] synonym: "puboperineal region" EXACT [FMA:20462] synonym: "pudendum femininum" EXACT [FMA:20462, FMA:TA] synonym: "skin of female pudendum" EXACT [] synonym: "skin of vulva" EXACT [] synonym: "vulva" EXACT [MA:0000395] xref: BTO:0003101 xref: EFO:0000978 xref: EV:0100118 xref: FMA:20462 xref: GAID:383 xref: MA:0000395 xref: MAT:0000169 xref: MESH:A.05.360.319.887 xref: MIAA:0000169 xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA xref: SCTID:265796001 xref: VHOG:0001458 xref: galen:Vulva xref: ncithesaurus:Vulva is_a: UBERON:0005056 ! external female genitalia relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000998 name: seminal vesicle namespace: uberon alt_id: UBERON:FBbt_00004958-FMA_19386-MA_0000410-MIAA_0000171-WBbt_0006870 def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, Wikipedia:Seminal_vesicle] comment: Function notes: The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70%[2] of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid. subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "glandula seminalis" RELATED [BTO:0001234] synonym: "glandula vesiculosa" RELATED [BTO:0001234] synonym: "gon_male_sves" RELATED [] synonym: "seminal gland" BROAD [] synonym: "vas efferens" RELATED [] synonym: "vesicul%c3%a6 seminales" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicula seminalis" RELATED [BTO:0001234, Wikipedia:Seminal_vesicle] synonym: "vesiculae seminales" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular gland" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular glands" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular seminalis" RELATED [Wikipedia:Seminal_vesicle] xref: AAO:0010788 xref: BTO:0001234 xref: EFO:0000986 xref: EMAPA:19180 xref: EV:0100106 xref: FMA:19386 xref: GAID:394 xref: MA:0000410 xref: MAT:0000171 xref: MESH:A.05.360.444.713 xref: MIAA:0000171 xref: OpenCyc:Mx4rwTtRpJwpEbGdrcN5Y29ycA xref: SCTID:181434004 xref: VHOG:0001379 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png xref: ncithesaurus:Seminal_Vesicle is_a: UBERON:0006868 ! seminal fluid secreting gland relationship: part_of UBERON:0000473 ! testis [Term] id: UBERON:0000999 name: ejaculatory duct namespace: uberon alt_id: UBERON:FBbt_00004965-FMA_19325-MIAA_0000170 def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]." [Wikipedia:Ejaculatory_duct] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ductus ejaculatorii" EXACT PLURAL [BTO:0001580] synonym: "ductus ejaculatorius" EXACT [BTO:0001580] xref: BTO:0001580 xref: EFO:0000985 xref: EMAPA:19088 xref: FMA:19325 xref: GAID:388 xref: MAT:0000170 xref: MESH:A.05.360.444.251 xref: MIAA:0000170 xref: OpenCyc:Mx4rwOt7MJwpEbGdrcN5Y29ycA xref: SCTID:279665005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png xref: ncithesaurus:Ejaculatory_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0001000 name: vas deferens namespace: uberon alt_id: UBERON:FBbt_00004968-FMA_19234-MA_0000413-MIAA_0000129-WBbt_0005337 def: "duct that transports sperm from the testis. In mammals this is from the epididymis." [Wikipedia:Vas_deferens] comment: Taxon notes (from WP): Most vertebrates have some form of duct to transfer the sperm from the testes to the urethra. In cartilaginous fish and amphibians, sperm is carried through the archinephric duct, which also partially helps to transport urine from the kidneys. In teleosts, there is a distinct sperm duct, separate from the ureters, and often called the vas deferens, although probably not truly homologous with that in humans. In cartilaginous fishes, the part of the archinephric duct closest to the testis is coiled up to form an epididymis. Below this are a number of small glands secreting components of the seminal fluid. The final portion of the duct also receives ducts from the kidneys in most species. In amniotes, however, the archinephric duct has become a true vas deferens, and is used only for conducting sperm, never urine. As in cartilaginous fish, the upper part of the duct forms the epididymis. In many species, the vas deferens ends in a small sac for storing sperm. The only vertebrates to lack any structure resembling a vas deferens are the primitive jawless fishes, which release sperm directly into the body cavity, and then into the surrounding water through a simple opening in the body wall. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "deferent duct" EXACT [] synonym: "ductus deferens" EXACT [Wikipedia:Vas_deferens] synonym: "sperm duct" RELATED [] synonym: "vas deferen" EXACT [] synonym: "vasa deferentia" RELATED [] xref: BTO:0001427 xref: EFO:0000981 xref: EMAPA:18681 xref: EV:0100105 xref: FMA:19234 xref: GAID:404 xref: MA:0000413 xref: MESH:A.05.360.444.930 xref: MIAA:0000129 xref: OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA xref: SCTID:245467009 xref: VHOG:0001135 xref: galen:VasDeferens xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png xref: ncithesaurus:Vas_Deferens is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0005352 ! spermatic cord relationship: part_of UBERON:0006947 ! male genital duct [Term] id: UBERON:0001001 name: chitin-based cuticle namespace: uberon alt_id: UBERON:FBbt_00004970 def: "The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]." [UBERON:cjm, Wikipedia:Cuticle#Invertebrate_zoology, https://sourceforge.net/tracker/index.php?func=detail&aid=3348965&group_id=36855&atid=440764] comment: TODO - split from exoskeleton? Also: See above sf item to see if this belongs in GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arthropod cuticle" RELATED [] synonym: "cuticle" NARROW [FBbt:00004970] synonym: "exoskeleton" BROAD [] synonym: "insect cuticle" RELATED [] xref: EFO:0000944 xref: FBbt:00004970 xref: HAO:0000240 xref: MAT:0000150 xref: MIAA:0000150 xref: OpenCyc:Mx4rvVkBTJwpEbGdrcN5Y29ycA is_a: UBERON:0001002 ! cuticle relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0001002 name: cuticle namespace: uberon alt_id: UBERON:FBbt_00004970-MIAA_0000150-WBbt_0005755 def: "tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]." [Wikipedia:Cuticle, http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764] comment: TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle. See also arthropod-anatomy ontology. Note in ncit Cuticle is a plant part subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cuticula" RELATED [BTO:0001600] xref: BTO:0001600 is_a: UBERON:0000476 ! acellular anatomical structure disjoint_from: UBERON:0004882 ! eponychium [Term] id: UBERON:0001003 name: epidermis namespace: uberon alt_id: UBERON:FBbt_00004993-FBbt_00005401-FMA_70596-MA_0000153-MIAA_0000154-WBbt_0005733-XAO_0000028-ZFA_0000105 def: "The outer layer of the skin[WP]. cellular, multilayered epithelium derived from the ectoderm[ZFA]." [ISBN10:0073040584, Wikipedia:Epidermis_(skin)] comment: Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adult epidermis" EXACT [] synonym: "skin" BROAD [] synonym: "vertebrate epidermis" EXACT [] xref: AAO:0000143 xref: BTO:0000404 xref: EFO:0000954 xref: EHDAA2:0001844 xref: EMAPA:17525 xref: EV:0100153 xref: FMA:70596 xref: GAID:932 xref: MA:0000153 xref: MAT:0000154 xref: MESH:A.10.272.497 xref: MIAA:0000154 xref: SCTID:361694003 xref: TAO:0000105 xref: VHOG:0000077 xref: XAO:0000028 xref: ZFA:0000105 xref: ncithesaurus:Epidermis is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007376 ! outer epithelial layer relationship: part_of UBERON:0002097 ! skin of body relationship: part_of UBERON:0002199 ! integument relationship: part_of UBERON:0000014 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! zone of skin [Term] id: UBERON:0001004 name: respiratory system namespace: uberon alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272 def: "Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system] comment: This class was created automatically from a combination of ontologies subset: functional_classification ! functional_classification subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Atmungssystem" RELATED [BTO:0000203] synonym: "apparatus respiratorius" EXACT [] synonym: "apparatus respiratorius " RELATED [BTO:0000203] synonym: "respiratory system" EXACT [] xref: AAO:0000541 xref: BTO:0000203 xref: EFO:0000804 xref: EHDAA2:0001604 xref: EHDAA:2203 xref: EMAPA:16727 xref: EV:0100036 xref: FMA:7158 xref: GAID:78 xref: MA:0000327 xref: MAT:0000030 xref: MESH:A.04 xref: MIAA:0000030 xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA xref: SCTID:278197002 xref: TAO:0000272 xref: VHOG:0000202 xref: XAO:0000117 xref: ZFA:0000272 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Respiratory_system_complete_en.svg/200px-Respiratory_system_complete_en.svg.png xref: ncithesaurus:Respiratory_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0002075 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! viscus disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001005 name: respiratory airway namespace: uberon alt_id: UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118 def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] comment: This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED) subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: SCTID:361380005 is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001006 name: spiracle namespace: uberon alt_id: UBERON:FBbt_00005054-MIAA_0000208 def: "OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [ISBN:3110148986, Wikipedia:Spiracle] is_obsolete: true consider: UBERON:0010019 ! spiracle comment: This class was obsoleted as it grouped together disparate classes. For the fish structure, see UBERON:0010019. The arthropod structure will presumably be added to the arthropod anatomy synonym: "open tracheal system spiracle" NARROW [GO:0035277] synonym: "spiracle of open tracheal system" NARROW [GO:0035277] synonym: "spiracular gland" RELATED [] xref: EFO:0000936 xref: FBbt:00005054 xref: HAO:0000950 xref: MAT:0000208 xref: MIAA:0000208 xref: TGMA:0000578 [Term] id: UBERON:0001007 name: digestive system namespace: uberon alt_id: UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339 def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system] comment: note that many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "alimentary system" RELATED [] synonym: "alimentary tract" RELATED [] synonym: "gastrointestinal system" RELATED [] synonym: "gut" RELATED [] xref: AAO:0000129 xref: BILA:0000082 xref: BTO:0000058 xref: EFO:0000793 xref: EV:0100056 xref: FBbt:00005055 xref: FMA:7152 xref: GAID:278 xref: MA:0002431 xref: MAT:0000018 xref: MESH:A.03 xref: MIAA:0000018 xref: SCTID:278859004 xref: TADS:0000170 xref: TAO:0000339 xref: WBbt:0005748 xref: XAO:0000125 xref: ZFA:0000339 xref: galen:DigestiveSystem xref: ncithesaurus:Digestive_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0002075 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! viscus disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001008 name: excretory system namespace: uberon alt_id: UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163 def: "The excretory system is the system of an organism that mainly performs the function of excretion, the bodily process of discharging wastes. It is responsible for the elimination of wastes produced by the processes that maintain homeostasis." [BILA:0000015, Wikipedia:Excretory_system] comment: In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "renal or urinary system" RELATED [EHDAA:5901] synonym: "renal system" EXACT [GO:0001977] synonym: "renal/urinary system" RELATED [] synonym: "systema urinaria" EXACT [] synonym: "systema urinarium" RELATED [BTO:0003092] synonym: "urinary system" EXACT [] synonym: "urinary tract" RELATED [] xref: AAO:0010257 xref: BILA:0000015 xref: BTO:0003092 xref: EFO:0000803 xref: EHDAA2:0001601 xref: EHDAA:5901 xref: EMAPA:17366 xref: EV:0100095 xref: FBbt:00005056 xref: FMA:7159 xref: GAID:391 xref: MA:0000325 xref: MAT:0000027 xref: MESH:A.05.810 xref: MIAA:0000027 xref: SCTID:362204003 xref: TADS:0000162 xref: TAO:0000163 xref: VHOG:0000723 xref: WBbt:0005736 xref: XAO:0000143 xref: ZFA:0000163 xref: galen:UrinaryTract xref: ncithesaurus:Urinary_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0002075 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! viscus relationship: part_of UBERON:0004122 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! genitourinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001009 name: circulatory system namespace: uberon alt_id: UBERON:FBbt_00005057-FMA_7161-MA_0000010-MIAA_0000016-XAO_0000100-ZFA_0000010 def: "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system] comment: the cardiovascular system and the lymphatic system are parts of the circulatory system subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000959 xref: FBbt:00005057 xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA xref: VHOG:0001248 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001010 name: diaphysis of ulna namespace: uberon synonym: "body of ulna" EXACT [FMA:33760] synonym: "corpus ulnae" EXACT [FMA:33760] synonym: "shaft of ulna" EXACT [FMA:33760] synonym: "ulnar diaphysis" EXACT [FMA:33760] xref: FMA:33760 xref: SCTID:302520004 is_a: UBERON:0004769 ! diaphysis [Term] id: UBERON:0001011 name: hemolymph namespace: uberon alt_id: UBERON:FBbt_00005061-MIAA_0000054 def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [Wikipedia:Hemolymph] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "haemolymph" RELATED [] xref: BTO:0000572 xref: FBbt:00005061 xref: GAID:1220 xref: MAT:0000054 xref: MESH:A.13.453 xref: MIAA:0000054 xref: TGMA:0000000 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0002323 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! body cavity [Term] id: UBERON:0001012 name: head of radius namespace: uberon def: "The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]." [Wikipedia:Head_of_radius] synonym: "radial head" EXACT [FMA:33773] xref: FMA:33773 xref: SCTID:181941003 xref: galen:HeadOfRadius is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001490 ! elbow joint relationship: part_of UBERON:0004413 ! proximal epiphysis of radius [Term] id: UBERON:0001013 name: adipose tissue namespace: uberon alt_id: UBERON:FBbt_00005065-FMA_20110-MA_0000009-MIAA_0000015-XAO_0003049 def: "Dense irregular connective tissue, which predominantly consists of adipocytes. Fat is stored in adipose tissue." [NLM:adipose+tissue, Wikipedia:Adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adipose" RELATED [BTO:0001487] synonym: "bodyfat" RELATED [BTO:0001487] synonym: "fat" EXACT [MA:0000009] synonym: "fat tissue" EXACT [] synonym: "fatty tissue" EXACT [] xref: AAO:0000001 xref: AEO:000020 xref: BTO:0001487 xref: EFO:0000234 xref: EFO:0000790 xref: EHDAA2:0003120 xref: EV:0100381 xref: FMA:20110 xref: GAID:920 xref: MA:0000009 xref: MAT:0000015 xref: MESH:A.10.165.114 xref: MIAA:0000015 xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA xref: SCTID:55603005 xref: VHOG:0001284 xref: XAO:0003049 xref: ZFA:0005345 xref: galen:FattyTissue xref: ncithesaurus:Adipose_Tissue is_a: UBERON:0002384 ! connective tissue disjoint_from: UBERON:0003714 ! neural tissue [Term] id: UBERON:0001014 name: fat body namespace: uberon alt_id: UBERON:FBbt_00005066-FMA_58616-MA_0002481-MIAA_0000096-XAO_0003050 def: "the encapsulated adipose tissue." [MP:0005334] is_obsolete: true consider: UBERON:0003917 ! arthropod fat body synonym: "fat pad" EXACT [] [Term] id: UBERON:0001015 name: musculature namespace: uberon alt_id: UBERON:FBbt_00005069-FMA_30316-FMA_32558-MA_0000015-MIAA_0000025-WBbt_0005737-XAO_0000172-ZFA_0000548-ZFA_0005145 def: "Anatomical system that allows the animal move, includes all muscles[WP]." [BTO:0000887, Wikipedia:Muscular_system, ZFIN:curator] comment: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (not MA:musculature) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "muscle group" EXACT [] synonym: "muscle system" RELATED [] synonym: "muscles" RELATED [] synonym: "muscles set" EXACT [] synonym: "musculature" EXACT [] synonym: "musculature system" RELATED [] synonym: "musculi" EXACT [FMA:32558, FMA:TA] synonym: "set of muscles" EXACT [FMA:32558] synonym: "set of organs" EXACT [] synonym: "set of skeletal muscles" EXACT [MA:0000165] xref: AAO:0011066 xref: BTO:0000887 xref: EFO:0001949 xref: FMA:32558 xref: MA:0000165 xref: OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA xref: TAO:0000548 xref: WBbt:0005737 xref: ZFA:0000548 xref: ncithesaurus:Muscle is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000383 ! musculature of body property_value: "spatially_disjoint_from" UBERON:0001474 [Term] id: UBERON:0001016 name: nervous system namespace: uberon alt_id: UBERON:FBbt_00005093-FMA_7157-MA_0000016-MIAA_0000026-WBbt_0005735-XAO_0000177-ZFA_0000396 def: "a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Nervensystem" RELATED [BTO:0001484] synonym: "nerve net" NARROW [Wikipedia:Nerve_net] xref: AAO:0000324 xref: BILA:0000079 xref: BTO:0001484 xref: EFO:0000802 xref: EHDAA2:0001246 xref: EHDAA:826 xref: EMAPA:16469 xref: EV:0100162 xref: FBbt:00005093 xref: FMA:7157 xref: GAID:466 xref: MA:0000016 xref: MAT:0000026 xref: MESH:A.08 xref: MIAA:0000026 xref: NIF_GrossAnatomy:birnlex_844 xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA xref: SCTID:278196006 xref: TAO:0000396 xref: VHOG:0000402 xref: WBbt:0005735 xref: XAO:0000177 xref: ZFA:0000396 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png xref: ncithesaurus:Nervous_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001017 name: central nervous system namespace: uberon alt_id: UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012 def: "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. The part of the nervous system which in vertebrates consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Neuraxis plus retina[INCF]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator] comment: ZFA retina NOT part_of CNS. XAO excludes retina in text def, retina part_of CNS. MA retina NOT part_of CNS. NIF_GA retina NOT part_of CNS. Fly also excludes it. EFO also excludes it. GO also excludes it. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CNS" EXACT [] synonym: "cerebrospinal axis" EXACT [FMA:55675] synonym: "neuraxis" EXACT [FMA:55675] synonym: "systema nervosum centrale" EXACT [FMA:55675, FMA:TA] xref: AAO:0000090 xref: BILA:0000080 xref: BTO:0000227 xref: EFO:0000908 xref: EHDAA2:0000225 xref: EHDAA:828 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 xref: FBbt:00005094 xref: FMA:55675 xref: GAID:570 xref: MA:0000167 xref: MAT:0000457 xref: MESH:A.08.186 xref: NIF_GrossAnatomy:birnlex_1099 xref: OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA xref: SCTID:278199004 xref: TAO:0000012 xref: VHOG:0000293 xref: XAO:0000215 xref: ZFA:0000012 xref: ncithesaurus:Central_Nervous_System is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0005743 ! central nervous system plus retina relationship: develops_from UBERON:0007284 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive neural plate [Term] id: UBERON:0001018 name: axon tract namespace: uberon alt_id: UBERON:FBbt_00005100-FMA_76739 def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: WP says this is the analog of peripheral nerves in CNS synonym: "neuraxis tract" EXACT [FMA:83847] synonym: "tract" RELATED [] synonym: "tract of neuraxis" EXACT [FMA:83847] xref: EV:0100304 xref: FBbt:00005100 xref: FMA:83847 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0001019 name: fascicle namespace: uberon alt_id: UBERON:FBbt_00005101-FMA_76740 def: "A slender neuron projection bundle[FBbt]." [Wikipedia:Nerve_fascicle] comment: TODO - invert specific? note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fasciculus" EXACT [] synonym: "nerve bundle" EXACT [FMA:12235] synonym: "nerve fasciculus" EXACT [FMA:12235] synonym: "neural fasciculus" EXACT [FMA:12235] xref: BTO:0004101 xref: FBbt:00005101 xref: FMA:12235 xref: NIF_GrossAnatomy:birnlex_872 xref: TGMA:0000088 xref: ncithesaurus:Fascicle is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0001020 name: commissure namespace: uberon alt_id: UBERON:FBbt_00005103-FMA_76741 def: "White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." [ISBN:3110148986, Wikipedia:Commissure, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: *not* the same as FMA:76741 Commissure subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "commissure of neuraxis" EXACT [FMA:83906] synonym: "neuraxis commissure" EXACT [FMA:83906] xref: FBbt:00005103 xref: FMA:83906 xref: NIF_GrossAnatomy:nlx_anat_20090513 xref: OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw xref: TADS:0000201 xref: ncithesaurus:Commissure is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0001021 name: nerve namespace: uberon alt_id: UBERON:FBbt_00005099-FMA_5914 alt_id: UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009 def: "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nerve, ZFA:0007009, ZFIN:curator] comment: check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "neural subtree" RELATED [FMA:65132] xref: AAO:0011070 xref: AEO:0000137 xref: BTO:0000925 xref: EHDAA2:0003137 xref: EHDAA:2851 xref: EHDAA:3776 xref: EHDAA:4657 xref: EV:0100162 xref: FBbt:00005105 xref: FMA:65132 xref: GAID:758 xref: MA:0000217 xref: OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA xref: SCTID:256864008 xref: TAO:0007009 xref: XAO:0003047 xref: ZFA:0007009 xref: galen:Nerve xref: ncithesaurus:Nerve is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0003714 ! neural tissue relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0001022 name: cell body namespace: uberon alt_id: UBERON:FBbt_00005107-FMA_67301 def: "Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus.[FMA]" [FMA:FMA, Wikipedia:Cell_body, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: TODO - use GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cell soma" EXACT [] synonym: "soma" RELATED [] xref: FBbt:00005107 xref: FMA:67301 xref: GO:0043025 xref: NIF_Subcellular:sao1044911821 is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000540 ! neuron [Term] id: UBERON:0001023 name: dendrite namespace: uberon alt_id: UBERON:FBbt_00005110-FMA_67314 def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones." [Wikipedia:Dendrite, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: TODO - use GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FBbt:00005110 xref: FMA:67314 xref: GAID:749 xref: GO:0030425 xref: MESH:A.08.663.256 xref: NIF_Subcellular:sao1211023249 xref: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA xref: TGMA:0001373 xref: ncithesaurus:Dendrite is_a: UBERON:0001024 ! neurite [Term] id: UBERON:0001024 name: neurite namespace: uberon alt_id: UBERON:FBbt_00005113-FMA_61814 def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [Wikipedia:Neurite, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: TODO - use GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FBbt:00005113 xref: FMA:61814 xref: GAID:751 xref: GO:0043005 xref: MESH:A.08.663.256.500 xref: NIF_Subcellular:sao-867568886 is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000540 ! neuron [Term] id: UBERON:0001025 name: synapse namespace: uberon alt_id: UBERON:FBbt_00005114-FMA_67408 def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [Wikipedia:Synapse, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: TODO - use GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "synaptic junction" EXACT [] xref: FBbt:00005114 xref: FMA:67408 xref: GAID:766 xref: GO:0045202 xref: MESH:A.08.850 xref: NIF_Subcellular:sao914572699 xref: SCTID:362298009 xref: ncithesaurus:Synapse is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000540 ! neuron [Term] id: UBERON:0001026 name: motor nerve namespace: uberon alt_id: UBERON:FBbt_00005135-FMA_5867 def: "General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [Wikipedia:Motor_nerve] is_obsolete: true synonym: "efferent nerve" RELATED [] synonym: "nervus motorius" EXACT [] [Term] id: UBERON:0001027 name: sensory nerve namespace: uberon alt_id: UBERON:FBbt_00005136-FMA_5868 def: "General anatomical term applied to nerves in which somatic afferent nerve fibers predominate[FMA]. nerves that receive sensory stimuli made up of nerve fibers, called sensory fibers (mechanoreceptor fibers sense body movement and pressure placed against the body, and nociceptor fibers sense tissue injury)[WP]." [Wikipedia:Sensory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "afferent nerve" RELATED [] synonym: "nervus sensorius" EXACT [] xref: AEO:0000201 xref: EHDAA2:0003200 xref: FBbt:00005136 xref: FMA:5868 xref: OpenCyc:Mx4rv0GdXpwpEbGdrcN5Y29ycA is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001028 name: diaphysis of radius namespace: uberon synonym: "body of radius" EXACT [FMA:33782] synonym: "corpus radii" EXACT [FMA:33782] synonym: "radial diaphysis" EXACT [FMA:33782] synonym: "shaft of radius" EXACT [FMA:33782] xref: FMA:33782 xref: SCTID:302518002 is_a: UBERON:0004769 ! diaphysis [Term] id: UBERON:0001029 name: neuromuscular junction namespace: uberon alt_id: UBERON:FBbt_00005142-FMA_61803 def: "." [Wikipedia:Neuromuscular_junction] comment: TODO - use GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "myoneural junction" EXACT [] xref: FBbt:00005142 xref: FMA:61803 xref: GAID:809 xref: GO:0031594 xref: MESH:A.08.800.550.550.550 xref: NIF_Subcellular:sao1124888485 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0000010 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! peripheral nervous system [Term] id: UBERON:0001030 name: synaptic ribbon namespace: uberon alt_id: UBERON:FBbt_00005143-FMA_67107 comment: TODO - use GO synonym: "ribbon synapse" EXACT [] xref: FBbt:00005143 xref: FMA:67107 xref: NIF_Subcellular:sao1884931180 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0001025 ! synapse relationship: part_of UBERON:0001029 ! neuromuscular junction [Term] id: UBERON:0001031 name: neurilemma namespace: uberon alt_id: UBERON:FBbt_00005151-FMA_62976 def: "thin membranous sheath around a nerve fiber[TFD]." [Wikipedia:Neurilemma, http://www.thefreedictionary.com/neurolemma] comment: FMA def is 'Neural tissue which consists of Schwann cells' which does not fit, but we still use 'neural tissue' here. WP def specifically states Schwann cells, which would restrict it to PNS subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Schwann's membrane" RELATED [BTO:0003048] synonym: "endoneural membrane" RELATED [BTO:0003048] synonym: "neurolemma" EXACT [] synonym: "sheath of Schwann" EXACT [] xref: BTO:0003048 xref: FBbt:00005151 xref: FMA:62976 xref: GAID:730 xref: MESH:A.08.561.600 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Gray631.png/200px-Gray631.png xref: ncithesaurus:Sheath_of_Schwann is_a: UBERON:0003714 ! neural tissue is_a: UBERON:0000476 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! acellular anatomical structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001032 name: sensory system namespace: uberon alt_id: UBERON:FBbt_00005155-FMA_78499-MA_0002442-MIAA_0000031-WBbt_0005832-ZFA_0000282 def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system] comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "organa sensuum" EXACT [FMA:75259, FMA:TA] synonym: "sense organ subsystem" EXACT [] synonym: "sense organs" EXACT [FMA:75259] synonym: "sense organs set" EXACT [FMA:75259] synonym: "sensory organ system" RELATED [] synonym: "sensory subsystem" EXACT [] xref: AAO:0000555 xref: BILA:0000099 xref: EFO:0000805 xref: EHDAA2:0003094 xref: EMAPA:16192 xref: FBbt:00005827 xref: FMA:75259 xref: MA:0002442 xref: MAT:0000031 xref: MESH:A.09 xref: MIAA:0000031 xref: NIF_GrossAnatomy:nlx_anat_090816 xref: TAO:0000282 xref: XAO:0003194 xref: ZFA:0000282 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! nervous system relationship: part_of UBERON:0004456 ! entire sense organ system relationship: part_of UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo relationship: part_of UBERON:0001016 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! nervous system [Term] id: UBERON:0001033 name: gustatory system namespace: uberon alt_id: UBERON:FBbt_00005159-FMA_7194-MA_0002446-MIAA_0000275-ZFA_0001101 def: "A subset of the sensory system for the sensing of taste." [Wikipedia:Gustatory_system] comment: in ZFA and MA this is a subtype of sensory system. we should change sensory system to disambiguate parts and wholes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "gustatory organ system" EXACT [] synonym: "taste system" EXACT [] xref: AAO:0010577 xref: BILA:0000143 xref: EFO:0000830 xref: FMA:7194 xref: MA:0002446 xref: MAT:0000275 xref: MIAA:0000275 xref: NIF_GrossAnatomy:nlx_anat_090803 xref: SCTID:423940004 xref: TAO:0001101 xref: XAO:0003197 xref: ZFA:0001101 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0001032 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! sensory system is_a: UBERON:0001032 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! sensory system is_a: UBERON:0001032 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! sensory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001034 name: photoreceptor namespace: uberon alt_id: UBERON:FBbt_00005162-FMA_85613 def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous" [Wikipedia:Photoreceptor] is_obsolete: true consider: CL:0000210 ! photoreceptor cell xref: BTO:0001060 xref: FBbt:00005162 xref: FMA:85613 xref: GAID:778 [Term] id: UBERON:0001035 name: dento-alveolar joint namespace: uberon alt_id: UBERON:FBbt_00005172-FMA_7495-MA_0001499 def: "Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth.[FMA]" [FMA:FMA, Wikipedia:Gomphosis] comment: This class was created automatically from a combination of ontologies synonym: "dento-alveolar syndesmosis" EXACT [FMA:7495] synonym: "peg-and-socket joint" EXACT [FMA:7495] synonym: "socket" EXACT [FMA:7495] synonym: "syndesmosis dentoalveolaris" EXACT [FMA:7495, FMA:TA] xref: FMA:7495 xref: MA:0001499 xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1003.png/200px-Gray1003.png is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint relationship: part_of UBERON:0001708 ! jaw [Term] id: UBERON:0001037 name: strand of hair namespace: uberon alt_id: UBERON:FBbt_00005182-FMA_53667-MA_0000155-MIAA_0000160 def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [Wikipedia:Hair] comment: this class defines an individual hair. todo - consider fur / coat of fur, which has_part hair. TODO: for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "coat hair" RELATED [] synonym: "coat/ hair" RELATED [] synonym: "fur" RELATED [] synonym: "hair" EXACT [] synonym: "microchaeta" RELATED [] synonym: "quill" RELATED SENSU [] synonym: "setulae" RELATED [] synonym: "vibrissa" RELATED SENSU [] synonym: "whisker" RELATED SENSU [] xref: BTO:0001501 xref: EFO:0000958 xref: EMAPA:18769 xref: EV:0100157 xref: FMA:53667 xref: GAID:71 xref: MA:0000155 xref: MAT:0000160 xref: MESH:A.17.360 xref: MIAA:0000160 xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww xref: SCTID:361702001 xref: VHOG:0001191 xref: ncithesaurus:Hair is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0001038 name: chordotonal organ namespace: uberon alt_id: UBERON:FBbt_00005215-MIAA_0000209 def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament." [FB:FBrf0056378, Wikipedia:Chordotonal_organ] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ch" RELATED [] synonym: "scolopophorous organ" RELATED [] xref: EFO:0000940 xref: FBbt:00005215 xref: MAT:0000209 xref: MIAA:0000209 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0001040 name: yolk sac namespace: uberon alt_id: UBERON:FBbt_00005376-FMA_87180 def: "Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes." [Wikipedia:Yolk_sac] comment: Taxon notes: In therians, a structure homologous to the yolk sac is is present, but contains no yolk platelets. Instead it is filled with fluid [ISBN10:0073040584 \"Vertebrates, Kardong\"] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001471 xref: EFO:0003078 xref: EHDAA2:0002212 xref: EHDAA:164 xref: EMAPA:16085 xref: FMA:87180 xref: GAID:1301 xref: MESH:A.16.254.403.981 xref: SCTID:362845002 xref: VHOG:0000830 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray22.png/200px-Gray22.png xref: ncithesaurus:Yolk_Sac is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane [Term] id: UBERON:0001041 name: foregut namespace: uberon alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232 def: "Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut] comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. subset: developmental_classification ! developmental_classification subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0011042 xref: BILA:0000085 xref: BTO:0000507 xref: EHDAA2:0000557 xref: EHDAA:520 xref: EMAPA:16548 xref: FBbt:00005379 xref: FMA:45616 xref: MA:0001526 xref: SCTID:361409009 xref: TGMA:0001014 xref: VHOG:0000285 xref: XAO:0000232 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png xref: ncithesaurus:Foregut is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0004907 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! lower digestive tract relationship: develops_from UBERON:0004735 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! archenteron [Term] id: UBERON:0001042 name: chordate pharynx namespace: uberon alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056 def: "Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [Wikipedia:Pharynx] comment: Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pharynx" BROAD SENSU [FMA:46688] xref: AAO:0000967 xref: BTO:0001049 xref: EFO:0000836 xref: EHDAA2:0001458 xref: EHDAA:2947 xref: EMAPA:16706 xref: EMAPA:18838 xref: EV:0100065 xref: FMA:46688 xref: GAID:155 xref: MA:0000432 xref: MESH:A.03.867 xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA xref: TAO:0000056 xref: VHOG:0000462 xref: XAO:0003227 xref: ZFA:0000056 xref: galen:Pharynx xref: ncithesaurus:Pharynx is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006562 ! pharynx relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001043 name: esophagus namespace: uberon alt_id: UBERON:FBbt_00005381-FMA_7131-MA_0000352-MIAA_0000048-XAO_0000127-ZFA_0000204 def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [Wikipedia:Esophagus, http://www.rivm.nl/interspeciesinfo/inter/oesophagus/] comment: esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies: The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995) subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "gullet" EXACT [] synonym: "oesophagus" EXACT [] xref: AAO:0000145 xref: ANISEED:1235301 xref: BTO:0000959 xref: EFO:0000835 xref: EHDAA2:0001285 xref: EHDAA:2937 xref: EMAPA:16833 xref: EMAPA:18860 xref: EV:0100069 xref: FBbt:00005381 xref: FMA:7131 xref: GAID:291 xref: MA:0000352 xref: MAT:0000048 xref: MESH:A.03.365 xref: MIAA:0000048 xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA xref: SCTID:181245004 xref: TAO:0000204 xref: VHOG:0000450 xref: XAO:0000127 xref: ZFA:0000204 xref: galen:Esophagus xref: ncithesaurus:Esophagus is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! thoracic cavity organ relationship: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0002224 ! thoracic cavity relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm relationship: part_of UBERON:0005409 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system [Term] id: UBERON:0001044 name: salivary gland namespace: uberon alt_id: UBERON:FBbt_00005382-FMA_9597-MA_0000346-MIAA_0000079 def: "saliva-secreting exocrine glands of the oral cavity[GO]. The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research[WP]." [GO:0007431, Wikipedia:Salivary_gland] comment: currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals.[3] The salivary glands of some species, however, are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands subset: functional_classification ! functional_classification subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001203 xref: EFO:0000859 xref: EHDAA2:0001775 xref: EHDAA:7987 xref: EMAPA:17751 xref: EV:0100059 xref: FBbt:00005382 xref: FMA:9597 xref: GAID:937 xref: MA:0000346 xref: MAT:0000079 xref: MESH:A.10.336.779 xref: MIAA:0000079 xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA xref: SCTID:181236000 xref: VHOG:0000376 xref: galen:SalivaryGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg xref: ncithesaurus:Salivary_Gland is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003293 ! gland of oral region is_a: UBERON:0003294 ! gland of foregut is_a: UBERON:0010047 ! oral gland relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0000167 ! oral cavity relationship: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0001045 name: midgut namespace: uberon alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103 def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut] comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. subset: developmental_classification ! developmental_classification subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BILA:0000086 xref: BTO:0000863 xref: EFO:0001950 xref: EHDAA2:0001185 xref: EHDAA:983 xref: EMAPA:16255 xref: FBbt:00005383 xref: FMA:45617 xref: MA:0001564 xref: SCTID:361410004 xref: TGMA:0001036 xref: VHOG:0000290 xref: XAO:0000103 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg xref: ncithesaurus:Midgut is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0004907 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! lower digestive tract relationship: develops_from UBERON:0004735 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! archenteron [Term] id: UBERON:0001046 name: hindgut namespace: uberon alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104 def: "Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut] comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future (vertebrates have some contribution from NC - RCN:2012). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. subset: developmental_classification ! developmental_classification subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0011052 xref: BILA:0000087 xref: BTO:0000510 xref: EHDAA2:0000779 xref: EHDAA:975 xref: EMAPA:16715 xref: FBbt:00005384 xref: FMA:45618 xref: MA:0001527 xref: SCTID:362856002 xref: TGMA:0001020 xref: VHOG:0000459 xref: XAO:0000104 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png xref: ncithesaurus:Hindgut is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0004907 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! lower digestive tract relationship: develops_from UBERON:0004735 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! archenteron [Term] id: UBERON:0001047 name: neural glomerulus namespace: uberon alt_id: UBERON:FBbt_00005386 def: "Roundish subunit structure of synaptic neuropil, often ensheathed by glial lamellae and reflecting the terminal arborization domain(s) of one or more neurons[FBbt]. Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets[NIF]." [http://ccdb.ucsd.edu/SAO/images/glomerulus_sw_512x512.jpg, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: isa or partof neuropil? TODO. Add to GO? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "glomerulus" BROAD [] xref: FBbt:00005386 xref: NIF_Subcellular:sao587858733 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png xref: ncithesaurus:Glomerulus is_a: UBERON:0002606 ! neuropil [Term] id: UBERON:0001048 name: primordium namespace: uberon alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043 def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bud" RELATED [] synonym: "placode" RELATED [FBbt:00005495] synonym: "rudiment" RELATED [] xref: AEO:0000171 xref: BTO:0001886 xref: EFO:0001652 xref: EHDAA2:0003171 xref: FBbt:00005495 xref: FMA:86589 xref: MAT:0000482 xref: XAO:0003043 xref: ncithesaurus:Primordium is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! embryonic structure [Term] id: UBERON:0001049 name: neural tube namespace: uberon alt_id: UBERON:FBbt_00005554-MIAA_0000069-ZFA_0001135 def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [Wikipedia:Neural_tube] comment: The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium[GO:0021915] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "presumptive central nervous system" RELATED [] xref: AAO:0010617 xref: BTO:0001057 xref: EHDAA2:0001255 xref: EHDAA:2869 xref: EHDAA:908 xref: EMAPA:16164 xref: EMAPA:16530 xref: EMAPA:16757 xref: MAT:0000069 xref: MIAA:0000069 xref: SCTID:362852000 xref: TAO:0001135 xref: VHOG:0000307 xref: XAO:0003204 xref: ZFA:0001135 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Neural_Tube is_a: UBERON:0000025 ! tube is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001050 name: atrium namespace: uberon alt_id: UBERON:FBbt_00005615-FMA_85574-ZFA_0000471 def: "Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus." [FMA:85574] is_obsolete: true consider: UBERON:0002081 ! cardiac atrium comment: obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium xref: FMA:85574 [Term] id: UBERON:0001051 name: hypopharynx namespace: uberon alt_id: UBERON:FBbt_00005751-FMA_54880-MA_0001796 def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "laryngeal pharynx" EXACT [FMA:54877] synonym: "laryngopharynx" EXACT [FMA:54877] synonym: "pars laryngea pharyngis" RELATED [BTO:0001740] xref: BTO:0001740 xref: EFO:0001388 xref: EHDAA2:0004574 xref: EV:0100068 xref: FMA:54880 xref: GAID:338 xref: MA:0001796 xref: MESH:A.03.867.490 xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA xref: SCTID:281490009 xref: VHOG:0000445 xref: ncithesaurus:Hypopharynx is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0001052 name: rectum namespace: uberon alt_id: UBERON:FBbt_00005756-FMA_14544-MA_0000336-MIAA_0000050-WBbt_0005773-XAO_0000238 def: "the final straight portion of the large intestine in some mammals, and the gut in others, terminating in the anus[WP]." [BTO:0001158, Wikipedia:Rectum] comment: Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intestinum rectum" RELATED [BTO:0001158] synonym: "rectal sac" RELATED [] xref: AAO:0010401 xref: BTO:0001158 xref: EFO:0000848 xref: EHDAA2:0001592 xref: EHDAA:5836 xref: EMAPA:17896 xref: EMAPA:18925 xref: EV:0100081 xref: FMA:14544 xref: GAID:311 xref: MA:0000336 xref: MAT:0000050 xref: MESH:A.03.492.411.495.767 xref: MIAA:0000050 xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA xref: SCTID:181261002 xref: VHOG:0000427 xref: WBbt:0005773 xref: XAO:0000238 xref: galen:Rectum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif xref: ncithesaurus:Rectum is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0004907 ! lower digestive tract relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0001053 name: neurohemal organ namespace: uberon alt_id: UBERON:FBbt_00005757-MIAA_0000212 comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 xref: EFO:0000864 xref: FBbt:00005757 xref: MAT:0000212 xref: MIAA:0000212 is_a: UBERON:0000062 ! organ is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001054 name: Malpighian tubule namespace: uberon alt_id: UBERON:FBbt_00005786-MIAA_0000123 def: "The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum[FBbt]. Any of a group of long blind vessels opening into the posterior part of the alimentary canal in most insects and some other arthropods and functioning primarily as excretory organs[BTO]." [ISBN:3110148986, Wikipedia:Malpighian_tubule] comment: Editor note: this will be ceded to the Arthropod Anatomy Ontology subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Malphigian tube" RELATED [BTO:0000810] synonym: "tuba Malpighii" RELATED [BTO:0000810] xref: BTO:0000810 xref: EFO:0000243 xref: FBbt:00001896 xref: FBbt:00005786 xref: GAID:1228 xref: MAT:0000123 xref: MESH:A.13.574 xref: MIAA:0000123 xref: SCTID:41055008 xref: TADS:0000163 xref: TGMA:0001038 is_a: UBERON:0009773 ! renal tubule relationship: part_of UBERON:0002548 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! larva [Term] id: UBERON:0001055 name: ureter namespace: uberon alt_id: UBERON:FBbt_00005793-FMA_19667-FMA_9704-MA_0000378-MA_0000379-MIAA_0000120-MIAA_0000121-WBbt_0004540-WBbt_0005777-XAO_0000144-XAO_0000153 def: "the tube that conducts the urine from the renal pelvis to the bladder." [MP:0000534] is_obsolete: true consider: UBERON:0000056 ! ureter consider: UBERON:0000057 ! urethra [Term] id: UBERON:0001056 name: corpus cardiacum namespace: uberon alt_id: UBERON:FBbt_00005799-MIAA_0000211 comment: This class was created automatically from a combination of ontologies synonym: "corpora cardiaca" RELATED [BTO:0000432] xref: BTO:0000432 xref: EFO:0000380 xref: FBbt:00005799 xref: MAT:0000211 xref: MIAA:0000211 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001057 name: corpus allatum namespace: uberon alt_id: UBERON:FBbt_00005800-MIAA_0000210 def: "A neurosecretory organ forming part of the retrocerebral complex." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: todo - move to arthropod ontology subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "corpora allata" RELATED [BTO:0000291] xref: BTO:0000291 xref: EFO:0000379 xref: FBbt:00005800 xref: MAT:0000210 xref: MESH:A.08.713.100 xref: MIAA:0000210 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001058 name: mushroom body namespace: uberon alt_id: UBERON:FBbt_00005801-MIAA_0000336 def: "Paired neuropils, thought to be crucial to olfactory associative learning and memory. Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [Wikipedia:Mushroom_body, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0002675 xref: EFO:0000925 xref: FBbt:00005801 xref: GAID:1231 xref: MAT:0000336 xref: MESH:A.13.641 xref: MIAA:0000336 is_a: UBERON:0000045 ! ganglion is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003339 ! ganglion of central nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001059 name: pars intercerebralis namespace: uberon alt_id: UBERON:FBbt_00005802-MIAA_0000337 def: "a neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]." [http://en.wiktionary.org/wiki/pars_intercerebralis, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EFO:0000926 xref: FBbt:00005802 xref: MAT:0000337 xref: MIAA:0000337 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! brain [Term] id: UBERON:0001062 name: anatomical entity namespace: uberon alt_id: UBERON:FBbt_root_00000000-FMA_62955 def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AEO:0000000 xref: BILA:0000000 xref: CARO:0000000 xref: EHDAA2:0002229 xref: FBbt_root:00000000 xref: FMA:62955 xref: HAO:0000000 xref: NIF_GrossAnatomy:birnlex_6 xref: TAO:0100000 xref: TGMA:0001822 xref: ZFA:0100000 [Term] id: UBERON:0001063 name: flocculus namespace: uberon alt_id: UBERON:Flocculus-MA_0000992 def: "a small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule[WP]." [Wikipedia:Flocculus_(cerebellar)] comment: Note that flocculus is an exact label for two distinct classes in NIF subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hemispheric lobule X" RELATED INCONSISTENT [NIF_GrossAnatomy:nlx_anat_20081213] xref: ABA:FL xref: FMA:83881 xref: MA:0000992 xref: NIF_GrossAnatomy:birnlex_1329 xref: SCTID:30711003 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! hemisphere of cerebellum property_value: "spatially_disjoint_from" UBERON:0005347 property_value: "spatially_disjoint_from" UBERON:0005348 property_value: "spatially_disjoint_from" UBERON:0005349 property_value: "spatially_disjoint_from" UBERON:0005350 property_value: "spatially_disjoint_from" UBERON:0005351 [Term] id: UBERON:0001064 name: main pancreatic duct namespace: uberon alt_id: UBERON:0005627 alt_id: UBERON:FMA_10419-MA_0000124-ZFA_0001372 def: "a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "canal of Wirsung" RELATED [BTO:0002362] synonym: "chief pancreatic duct" EXACT [FMA:16003] synonym: "duct of Wirsung" EXACT [Wikipedia:Pancreatic_duct] synonym: "hepaticopancreatic duct" RELATED [BTO:0002362] synonym: "pancreatic duct" BROAD [MESH:A.03.734.667] synonym: "ventral pancreatic duct" EXACT [MA:0000126] xref: BTO:0002362 xref: EHDAA:6905 xref: EMAPA:17510 xref: EMAPA:18821 xref: FMA:16003 xref: GAID:337 xref: MA:0000126 xref: MESH:A.03.734.667 xref: RETIRED_EHDAA2:0002177 xref: SCTID:245385001 xref: VHOG:0000256 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1100.png/200px-Gray1100.png xref: ncithesaurus:Pancreatic_Duct is_a: UBERON:0002394 ! bile duct is_a: UBERON:0007329 ! pancreatic duct relationship: part_of UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0001065 name: parotid duct namespace: uberon alt_id: UBERON:FMA_10420-MA_0002697 def: "The parotid duct, also known as Stensen's duct, is the route that saliva takes from the parotid gland into the mouth. It passes through the buccal fat, buccopharyngeal fascia, and buccinator muscle then opens into the vestibule of the mouth opposite the upper second molar tooth. The buccinator acts as a valve that prevents inflation of the duct during blowing. Running along with the duct superiorly is the transverse facial artery and upper buccal nerve; running along with the duct inferiorly is the lower buccal nerve. [WP,unvetted]." [Wikipedia:Parotid_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Stensen's duct" EXACT [] synonym: "Stensens's duct" EXACT [] synonym: "duct of parotid" EXACT [OBOL:automatic] synonym: "duct of parotid gland" EXACT [] synonym: "parotid gland duct" EXACT [OBOL:automatic] synonym: "stenon duct" EXACT [] xref: BTO:0004554 xref: FMA:10420 xref: MA:0002697 xref: SCTID:362175009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray1023.png/200px-Gray1023.png xref: ncithesaurus:Parotid_Duct is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001831 ! parotid gland [Term] id: UBERON:0001066 name: intervertebral disk namespace: uberon alt_id: UBERON:FMA_10446-MA_0000110 def: "cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilaginous joint to allow slight movement of the vertebrae, and acts as a ligament to hold the vertebrae together[WP]." [Wikipedia:Intervertebral_disk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "discus intervertebralis" EXACT [FMA:10446, FMA:TA] synonym: "intervertebral disc" EXACT [] synonym: "intervertebral fibrocartilage" RELATED [BTO:0003625] synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc] synonym: "spinal disk" RELATED [BTO:0003625] xref: BTO:0003625 xref: EFO:0001370 xref: FMA:10446 xref: GAID:105 xref: MA:0000110 xref: MESH:A.02.165.410 xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA xref: SCTID:244570000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray301.png/200px-Gray301.png xref: ncithesaurus:Intervertebral_Disc is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005174 ! back organ is_a: UBERON:0002384 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! connective tissue relationship: part_of UBERON:0001468 ! intervertebral symphysis [Term] id: UBERON:0001067 name: vertebral arch joint namespace: uberon alt_id: UBERON:FMA_10447-MA_0001513 def: "a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Zygapophysial_joint] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "facet joint" EXACT [] synonym: "joint of vertebral arch" EXACT [] synonym: "joint of vertebral articular process" EXACT [] synonym: "zygapophyseal joint" EXACT [] synonym: "zygapophysial joint" EXACT [] xref: FMA:10447 xref: GAID:275 xref: MA:0001513 xref: MESH:A.02.835.583.979 xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA xref: SCTID:89836005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png xref: ncithesaurus:Facet_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0005174 ! back organ relationship: part_of UBERON:0003861 ! vertebral arch [Term] id: UBERON:0001068 name: skin of back namespace: uberon alt_id: UBERON:FMA_10462-MA_0000498 def: "A zone of skin that is part of a back [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "back skin" EXACT [] synonym: "back zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of back" EXACT [OBOL:automatic] xref: FMA:10462 xref: FMA:22985 xref: MA:0000498 xref: SCTID:181492002 is_a: UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0001069 name: head of pancreas namespace: uberon alt_id: UBERON:FMA_10468-MA_0000122 def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [Wikipedia:Head_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pancreas head" EXACT [] synonym: "pancreatic head" EXACT [] synonym: "right extremity of pancreas" EXACT [] xref: EHDAA2:0001374 xref: EMAPA:17507 xref: EMAPA:18820 xref: FMA:10468 xref: MA:0000122 xref: SCTID:362201006 xref: VHOG:0000448 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg xref: ncithesaurus:Head_of_the_Pancreas is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001070 name: external carotid artery namespace: uberon alt_id: UBERON:FMA_10635-MA_0001929-XAO_0000345-ZFA_0005022 def: "In human anatomy, the external carotid artery is a major artery of the head and neck. It arises from the common carotid artery when it bifurcates into the external and internal carotid artery." [Wikipedia:External_carotid_artery, https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722] comment: Taxon notes: not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010416 xref: BTO:0004696 xref: EFO:0001953 xref: EHDAA2:0000461 xref: EMAPA:18611 xref: FMA:10635 xref: GAID:480 xref: MA:0001929 xref: MESH:A.07.231.114.186.200.210 xref: OpenCyc:Mx4rwVJkPZwpEbGdrcN5Y29ycA xref: SCTID:362044002 xref: VHOG:0000265 xref: XAO:0000345 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/External_carotid_a.gif/200px-External_carotid_a.gif xref: ncithesaurus:External_Carotid_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005396 ! carotid artery segment is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001530 ! common carotid artery plus branches relationship: develops_from UBERON:0003118 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! aortic arch 1 [Term] id: UBERON:0001071 name: superficial cervical artery namespace: uberon alt_id: UBERON:FMA_10665-MA_0002052 def: "." [Wikipedia:Superficial_cervical_artery] comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:10665 xref: MA:0002052 xref: SCTID:161746006 xref: ncithesaurus:Superficial_Cervical_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001072 name: inferior vena cava namespace: uberon alt_id: UBERON:FMA_10951-MA_0000480-XAO_0000388 def: "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium." [Wikipedia:Inferior_vena_cava] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "posterior vena cava" EXACT [] synonym: "vena cava inferior" RELATED [BTO:0002682] xref: AAO:0011083 xref: BTO:0002682 xref: EHDAA2:0000611 xref: EMAPA:18416 xref: FMA:10951 xref: GAID:548 xref: MA:0000480 xref: MESH:A.07.231.908.949.648 xref: SCTID:181369003 xref: VHOG:0001194 xref: XAO:0000388 xref: galen:InferiorVenaCava xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray577.png/200px-Gray577.png xref: ncithesaurus:Inferior_Vena_Cava is_a: UBERON:0004087 ! vena cava relationship: develops_from UBERON:0001143 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hepatic vein [Term] id: UBERON:0001073 name: ileocecal junction namespace: uberon alt_id: UBERON:FMA_11338-MA_0000332 comment: This class was created automatically from a combination of ontologies synonym: "ileocaecal junction" EXACT [] xref: FMA:11338 xref: MA:0000332 xref: SCTID:264021000 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001074 name: pericardial cavity namespace: uberon alt_id: UBERON:FMA_11350-MA_0000053 def: "Cavity of serous sac surrounded by serous pericardium.[FMA]" [FMA:FMA, Wikipedia:Pericardial_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cavity of pericardial sac" EXACT [] xref: EHDAA2:0001434 xref: EMAPA:18447 xref: EMAPA:18448 xref: FMA:11350 xref: MA:0000053 xref: SCTID:362027001 xref: VHOG:0000556 xref: ZFA:0001655 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: ncithesaurus:Pericardial_Cavity is_a: UBERON:0002323 ! body cavity relationship: part_of UBERON:0002406 ! pericardial sac [Term] id: UBERON:0001075 name: body of vertebra namespace: uberon alt_id: UBERON:FMA_11945-MA_0001457 def: "The body is the largest part of a vertebra, and is more or less cylindrical in shape. Its upper and lower surfaces are flattened and rough, and give attachment to the intervertebral fibrocartilages, and each presents a rim around its circumference. In front, the body is convex from side to side and concave from above downward. Behind, it is flat from above downward and slightly concave from side to side. Its anterior surface presents a few small apertures, for the passage of nutrient vessels. On the posterior surface is a single large, irregular aperture, or occasionally more than one, for the exit of the basi-vertebral veins from the body of the vertebra. [WP,unvetted]." [Wikipedia:Body_of_vertebra] comment: todo - add subclasses: acoelus, amphicoelus, procoelus, opsithocoelus, heterocoelus; pleurocentrum, intercentrum; todo: add developmental relationships subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "autocentrum" EXACT [ZFA:0000126] synonym: "centrum" EXACT [] synonym: "centrum of vertebra" EXACT [] synonym: "corpus vertebrae" RELATED [Wikipedia:Body_of_vertebra] synonym: "corpus vertebrae (vertebrale)" EXACT [FMA:11945] synonym: "vertebral body" EXACT [FMA:11945] synonym: "vertebral centrum" EXACT [MA:0001457] xref: AAO:0000697 xref: FMA:11945 xref: MA:0001457 xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA xref: SCTID:361745008 xref: SCTID:362867001 xref: ZFA:0000126 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Corpusvertebrae.png/200px-Corpusvertebrae.png xref: ncithesaurus:Vertebral_Body is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0005174 ! back organ relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001076 name: spinous process of vertebra namespace: uberon alt_id: UBERON:FMA_11948-MA_0001455 def: "The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [WP,unvetted]." [Wikipedia:Processus_spinosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "neural spine" RELATED [] synonym: "processus spinosus" EXACT [] synonym: "vertebra spinous process" EXACT [] xref: AAO:0000705 xref: EMAPA:25107 xref: FMA:11948 xref: MA:0001455 xref: SCTID:264259004 xref: ZFA:0001336 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Processusspinosusvertebrae.png/200px-Processusspinosusvertebrae.png is_a: UBERON:0006061 ! process of vertebra relationship: part_of UBERON:0003861 ! vertebral arch [Term] id: UBERON:0001077 name: transverse process of vertebra namespace: uberon alt_id: UBERON:FMA_11949-MA_0001456 def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [Wikipedia:Processus_transversus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "processus transversus" EXACT [] synonym: "transverse process" EXACT [] synonym: "vertebra transverse process" EXACT [] xref: FMA:11949 xref: MA:0001456 xref: SCTID:264238006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Processustransversusvertebrae.PNG/200px-Processustransversusvertebrae.PNG is_a: UBERON:0006061 ! process of vertebra [Term] id: UBERON:0001078 name: pedicle of vertebra namespace: uberon alt_id: UBERON:FMA_11950-MA_0001458 def: "The pedicles are two short, thick processes, which project backward, one on either side, from the upper part of the body, at the junction of its posterior and lateral surfaces. They connect the body of the spinal vertebra to the arch. [WP,unvetted]." [Wikipedia:Pedicle_of_vertebral_arch] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pedicle" BROAD [] synonym: "pedicle of vertebral arch" EXACT [FMA:11950] synonym: "pediculus arcus vertebrae" EXACT [FMA:TA] synonym: "vertebral pedicle" EXACT [FMA:11950] xref: FMA:11950 xref: MA:0001458 xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA xref: SCTID:277422007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Pediculusarcusvertebrae.png/200px-Pediculusarcusvertebrae.png is_a: UBERON:0006061 ! process of vertebra relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001079 name: superior articular process of vertebra namespace: uberon alt_id: UBERON:FMA_11953-MA_0001452 def: "Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra." [AAO:Pugener_and_Maglia_2008] comment: TODO - add distinct classes for hemal vs neural? subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cranial articular process of vertebra" EXACT [] synonym: "neural prezygapophysis" EXACT [ZFA:0001325] synonym: "neural prezygopophyses" EXACT [ZFA:0001325] synonym: "prezygapophysis" EXACT [] synonym: "processus articularis superior" EXACT [] synonym: "vertebra cranial articular process" EXACT [] xref: AAO:0000703 xref: FMA:11953 xref: MA:0001452 xref: SCTID:42424006 xref: ZFA:0001325 xref: http://www.informatics.jax.org/cookbook/figures/figure20.shtml is_a: UBERON:0006062 ! articular process of vertebra relationship: part_of UBERON:0003861 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! vertebral arch [Term] id: UBERON:0001080 name: inferior articular process of vertebra namespace: uberon alt_id: UBERON:FMA_11954-MA_0001451 def: "Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra." [AAO:LAP] comment: TODO - add distinct classes for hemal vs neural? subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caudal articular process of vertebra" EXACT [] synonym: "neural postzygapophysis" NARROW [ZFA:0000681] synonym: "neural postzygopophysis" EXACT [ZFA:0000681] synonym: "postzygapophysis" EXACT [] synonym: "processus articularis inferior" EXACT [] synonym: "processus obliquus posterior" RELATED [AAO:0000702] synonym: "vertebra caudal articular process" EXACT [] xref: AAO:0000702 xref: FMA:11954 xref: MA:0001451 xref: SCTID:30079000 xref: ZFA:0000681 is_a: UBERON:0006062 ! articular process of vertebra relationship: part_of UBERON:0003861 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! vertebral arch [Term] id: UBERON:0001081 name: endocardium of ventricle namespace: uberon alt_id: UBERON:FMA_12148-MA_0000079-ZFA_0001615 def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic] synonym: "endocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "endocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "endocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "endocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle endocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricle endocardium" EXACT [] synonym: "ventricle of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricular endocardium" EXACT [] xref: FMA:12148 xref: MA:0000079 xref: SCTID:192172004 xref: VHOG:0000607 xref: ZFA:0001615 is_a: UBERON:0002165 ! endocardium relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001082 name: epicardium of ventricle namespace: uberon alt_id: UBERON:FMA_12150-ZFA_0005058 def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic] synonym: "cardiac ventricle heart epicardium" EXACT [OBOL:automatic] synonym: "cardiac ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "epicardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "epicardium of heart ventricle" EXACT [OBOL:automatic] synonym: "epicardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "epicardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart epicardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "heart epicardium of heart ventricle" EXACT [OBOL:automatic] synonym: "heart epicardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "heart epicardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle epicardium" EXACT [OBOL:automatic] synonym: "heart ventricle heart epicardium" EXACT [OBOL:automatic] synonym: "heart ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "lower chamber of heart epicardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart heart epicardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "ventricle of heart epicardium" EXACT [OBOL:automatic] synonym: "ventricle of heart heart epicardium" EXACT [OBOL:automatic] synonym: "ventricle of heart visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "ventricular epicardium" EXACT [] synonym: "visceral serous pericardium of heart of cardiac ventricle" EXACT [OBOL:automatic] synonym: "visceral serous pericardium of heart of heart ventricle" EXACT [OBOL:automatic] synonym: "visceral serous pericardium of heart of lower chamber of heart" EXACT [OBOL:automatic] synonym: "visceral serous pericardium of heart of ventricle of heart" EXACT [OBOL:automatic] xref: FMA:12150 xref: TAO:0005058 xref: ZFA:0005058 is_a: UBERON:0002348 ! epicardium relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001083 name: myocardium of ventricle namespace: uberon alt_id: UBERON:FMA_12151-MA_0000082-ZFA_0005061 def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac muscle of cardiac ventricle" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart ventricle" EXACT [OBOL:automatic] synonym: "cardiac muscle of lower chamber of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of ventricle of heart" EXACT [OBOL:automatic] synonym: "cardiac ventricle cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac ventricle heart muscle" EXACT [OBOL:automatic] synonym: "cardiac ventricle heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac ventricle muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac ventricle myocardium" EXACT [OBOL:automatic] synonym: "heart muscle of cardiac ventricle" EXACT [OBOL:automatic] synonym: "heart muscle of heart ventricle" EXACT [OBOL:automatic] synonym: "heart muscle of lower chamber of heart" EXACT [OBOL:automatic] synonym: "heart muscle of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart myocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "heart myocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "heart myocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "heart myocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle cardiac muscle" EXACT [OBOL:automatic] synonym: "heart ventricle heart muscle" EXACT [OBOL:automatic] synonym: "heart ventricle heart myocardium" EXACT [OBOL:automatic] synonym: "heart ventricle muscle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle myocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "lower chamber of heart heart muscle" EXACT [OBOL:automatic] synonym: "lower chamber of heart heart myocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart muscle of heart" EXACT [OBOL:automatic] synonym: "lower chamber of heart myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart of cardiac ventricle" EXACT [OBOL:automatic] synonym: "muscle of heart of heart ventricle" EXACT [OBOL:automatic] synonym: "muscle of heart of lower chamber of heart" EXACT [OBOL:automatic] synonym: "muscle of heart of ventricle of heart" EXACT [OBOL:automatic] synonym: "myocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "myocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "myocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "myocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "ventricle myocardium" EXACT [] synonym: "ventricle of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricle of heart heart muscle" EXACT [OBOL:automatic] synonym: "ventricle of heart heart myocardium" EXACT [OBOL:automatic] synonym: "ventricle of heart muscle of heart" EXACT [OBOL:automatic] synonym: "ventricle of heart myocardium" EXACT [OBOL:automatic] synonym: "ventricular myocardium" EXACT [] xref: EFO:0003088 xref: FMA:12151 xref: MA:0000082 xref: SCTID:192084000 xref: TAO:0005061 xref: VHOG:0000604 xref: ZFA:0005061 is_a: UBERON:0002349 ! myocardium relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001084 name: skin of head namespace: uberon alt_id: UBERON:FMA_12166-MA_0000582 def: "A zone of skin that is part of a head [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "adult head zone of skin" EXACT [OBOL:automatic] synonym: "head skin" EXACT [] synonym: "head zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of adult head" EXACT [OBOL:automatic] synonym: "zone of skin of head" EXACT [OBOL:automatic] xref: FMA:12166 xref: FMA:24756 xref: MA:0000582 xref: SCTID:181484006 xref: ncithesaurus:Head_Skin is_a: UBERON:0000014 ! zone of skin [Term] id: UBERON:0001085 name: skin of trunk namespace: uberon alt_id: UBERON:FMA_12167-MA_0000517 def: "A zone of skin that is part of a trunk [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "torso zone of skin" EXACT [OBOL:automatic] synonym: "trunk skin" EXACT [] synonym: "trunk zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of torso" EXACT [OBOL:automatic] synonym: "zone of skin of trunk" EXACT [OBOL:automatic] xref: FMA:12167 xref: FMA:23093 xref: MA:0000517 xref: SCTID:181489001 xref: ncithesaurus:Skin_of_the_Trunk is_a: UBERON:0000014 ! zone of skin [Term] id: UBERON:0001086 name: articular cartilage namespace: uberon alt_id: UBERON:FMA_12264-MA_0000487-ZFA_0001644 def: "the bones of a synovial joint are covered by this layer of hyaline cartilage that lines the epiphyses of joint end of bone with a smooth, slippery surface that does not bind them together; articular cartilage functions to absorb shock and reduce friction during movement." [Wikipedia:Synovial_joint#Structure] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cartilago articularis" EXACT [] xref: BTO:0001572 xref: EFO:0001902 xref: FMA:12264 xref: GAID:101 xref: MA:0000487 xref: MESH:A.02.165.165 xref: SCTID:305026006 xref: TAO:0001670 xref: ZFA:0001644 xref: galen:ArticularCartilage xref: ncithesaurus:Articular_Cartilage is_a: UBERON:0001994 ! hyaline cartilage is_a: UBERON:0003933 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranial cartilage relationship: part_of UBERON:0000982 ! skeletal joint relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0001087 name: pleural fluid namespace: uberon alt_id: UBERON:FMA_12273-MA_0002532 def: "Transudate contained in the pleural cavity.[FMA]" [FMA:FMA, Wikipedia:Pleural_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0003080 xref: FMA:12273 xref: MA:0002532 xref: MAT:0000500 xref: ncithesaurus:Pleural_Fluid is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001088 name: urine namespace: uberon alt_id: UBERON:FMA_12274-MA_0002545-MIAA_0000058 def: "Excretion in liquid state processed by the kidney.[FMA]" [FMA:FMA, Wikipedia:Urine] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001419 xref: EFO:0001939 xref: ENVO:00002047 xref: FMA:12274 xref: GAID:1189 xref: MA:0002545 xref: MAT:0000058 xref: MESH:A.12.207.927 xref: MIAA:0000058 xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA xref: galen:Urine xref: ncithesaurus:Urine is_a: UBERON:0000174 ! excreta [Term] id: UBERON:0001089 name: sweat namespace: uberon alt_id: UBERON:FMA_12275-MA_0002539 def: "Secretion produced by a sweat gland.[FMA]" [FMA:FMA, Wikipedia:Sweat] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "skin exudate" RELATED [BTO:0001254] xref: BTO:0001254 xref: ENVO:02000025 xref: FMA:12275 xref: GAID:1172 xref: MA:0002539 xref: MESH:A.12.200.849 xref: OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA xref: ncithesaurus:Sweat is_a: UBERON:0000456 ! bodily secretion is_a: UBERON:0006535 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! skin fluid/secretion [Term] id: UBERON:0001090 name: synovial fluid namespace: uberon alt_id: UBERON:FMA_12277-MA_0002544 def: "Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae.[FMA]" [FMA:FMA, Wikipedia:Synovial_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "joint fluid" EXACT [] xref: BTO:0001339 xref: ENVO:02000039 xref: FMA:12277 xref: GAID:265 xref: MA:0002544 xref: MESH:A.02.835.583.443.800.800 xref: ZFA:0005154 xref: galen:SynovialFluid xref: ncithesaurus:Synovial_Fluid is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0007617 ! synovial cavity of joint relationship: part_of UBERON:0002217 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! synovial joint [Term] id: UBERON:0001091 name: calcareous tooth namespace: uberon alt_id: UBERON:FMA_12516-MA_0000348-MIAA_0000041-XAO_0000431-ZFA_0000644-ZFA_0000694 def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [Wikipedia:Tooth, Wikipedia:Tooth_(animal), ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ceratobranchial 5 tooth" NARROW [] synonym: "dentine containing tooth" EXACT [] synonym: "tooth" EXACT [] synonym: "vertebrate tooth" EXACT [] xref: AEO:0000220 xref: BTO:0000397 xref: EFO:0000839 xref: EHDAA2:0004605 xref: EHDAA:8009 xref: EHDAA:8045 xref: EMAPA:17917 xref: EMAPA:17938 xref: EV:0100063 xref: FMA:12516 xref: GAID:1260 xref: MA:0000348 xref: MAT:0000041 xref: MESH:A.14.254.860 xref: MIAA:0000041 xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA xref: SCTID:302214001 xref: TAO:0000694 xref: VHOG:0000127 xref: XAO:0000431 xref: ZFA:0000694 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Teeth_by_David_Shankbone.jpg/200px-Teeth_by_David_Shankbone.jpg xref: ncithesaurus:Tooth is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003913 ! tooth-like structure relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0001708 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! jaw relationship: part_of UBERON:0003128 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cranium [Term] id: UBERON:0001092 name: first cervical vertebra namespace: uberon alt_id: UBERON:FMA_12519-MA_0001421 def: "." [Wikipedia:Atlas_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Atlas (CI)" EXACT [] synonym: "C1" BROAD [] synonym: "C1 vertebra" EXACT [] synonym: "atlas" EXACT [] synonym: "cervical atlas" EXACT [MP:0011576] synonym: "cervical vertebra 1" EXACT [] xref: AAO:0000709 xref: EHDAA:10606 xref: FMA:12519 xref: GAID:236 xref: MA:0001421 xref: MESH:A.02.835.232.834.151.213 xref: ZFA:0001167 xref: ncithesaurus:C1_Vertebra is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0001093 name: second cervical vertebra namespace: uberon alt_id: UBERON:FMA_12520-MA_0001422-ZFA_0000092 def: "second cervical vertebra (C2) of the spine." [Wikipedia:Axis_(anatomy)] comment: note: not the same as ZFA term 'axis' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "C2" BROAD [] synonym: "C2 vertebra" EXACT [] synonym: "axis" RELATED INCONSISTENT [MA:0001422] synonym: "axis (CII)" EXACT [] synonym: "cervical axis" EXACT [MP:0004608] synonym: "cervical vertebra 2" EXACT [MA:0001422] synonym: "vertebra 2" EXACT [ZFA:0001168] xref: EHDAA:10608 xref: FMA:12520 xref: GAID:237 xref: MA:0001422 xref: MESH:A.02.835.232.834.151.383 xref: OpenCyc:Mx4rv-zaJJwpEbGdrcN5Y29ycA xref: ZFA:0001168 xref: ncithesaurus:Axis is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0001094 name: sacral vertebra namespace: uberon alt_id: UBERON:FMA_12526-XAO_0003078 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sacral segment" EXACT [] synonym: "segment of sacrum" EXACT [] xref: EMAPA:18336 xref: FMA:12526 xref: MA:0000313 xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA xref: SCTID:361773005 xref: XAO:0003078 xref: galen:SacralVertebra xref: ncithesaurus:Sacral_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0005179 ! pelvis organ [Term] id: UBERON:0001095 name: caudal vertebra namespace: uberon alt_id: UBERON:FMA_12527-XAO_0003079-ZFA_0000326 def: "bones in the tails or coccyx of mammals. In zebrafish: Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [Wikipedia:Caudal_vertebra, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caudal vertebrae" EXACT PLURAL [] synonym: "tail vertebra" RELATED [MA:0000310] xref: EMAPA:18374 xref: MA:0000310 xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: TAO:0000326 xref: XAO:0003079 xref: ZFA:0000326 is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! abdominal segment bone is_a: UBERON:0006068 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! bone of tail [Term] id: UBERON:0001096 name: wall of esophagus namespace: uberon alt_id: UBERON:FMA_12611-MA_0002691 def: "An anatomical wall that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic] synonym: "anatomical wall of gullet" EXACT [OBOL:automatic] synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic] synonym: "esophageal wall" EXACT [] synonym: "esophagus anatomical wall" EXACT [OBOL:automatic] synonym: "esophagus wall" EXACT [] synonym: "gullet anatomical wall" EXACT [OBOL:automatic] synonym: "gullet wall" EXACT [OBOL:automatic] synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic] synonym: "oesophagus wall" EXACT [OBOL:automatic] synonym: "wall of gullet" EXACT [OBOL:automatic] synonym: "wall of oesophagus" EXACT [OBOL:automatic] xref: FMA:12611 xref: MA:0002691 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0001097 name: axillary lymph node namespace: uberon alt_id: UBERON:FMA_12771-MA_0000735 def: "The Axillary lymph nodes are of large size, vary from twenty to thirty in number, and may be arranged in the following groups: brachial lymph nodes (or 'lateral') pectoral axillary lymph nodes (or 'anterior') subscapular axillary lymph nodes (or 'posterior') central lymph nodes apical lymph nodes (or 'medial' or 'subclavicular') [WP,unvetted]." [Wikipedia:Axillary_lymph_node, Wikipedia:Axillary_lymph_nodes] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "axillary node" EXACT [] xref: FMA:12771 xref: MA:0000735 xref: SCTID:181759007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png xref: ncithesaurus:Axillary_Lymph_Node is_a: UBERON:0003968 ! peripheral lymph node is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001098 name: incisor tooth namespace: uberon alt_id: UBERON:FMA_12823-MA_0000349 def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [Wikipedia:Incisor_tooth] comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight b one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "incisor" EXACT [MA:0000349] xref: BTO:0001741 xref: EHDAA:8011 xref: EHDAA:8047 xref: FMA:12823 xref: GAID:1263 xref: MA:0000349 xref: MESH:A.14.254.860.425 xref: OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA xref: SCTID:420856006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Gray997.png/200px-Gray997.png xref: ncithesaurus:Incisor is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0003672 ! dentition [Term] id: UBERON:0001099 name: subcostal vein namespace: uberon alt_id: UBERON:FMA_12845-MA_0002222 def: "The subcostal vein is a vein in the human body that runs along the bottom of the twelfth rib. It has the same essential qualities as the posterior intercostal veins, except that it cannot be considered intercostal because it is not between two ribs. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:12845 xref: MA:0002222 xref: SCTID:25248001 xref: ncithesaurus:Subcostal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001100 name: pectoralis minor namespace: uberon alt_id: UBERON:FMA_13109-MA_0002355 def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [Wikipedia:Pectoralis_minor] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pectoralis minor muscle" EXACT [] xref: EHDAA2:0001425 xref: EHDAA:8313 xref: EMAPA:18180 xref: FMA:13109 xref: MA:0002355 xref: SCTID:181625002 xref: VHOG:0000902 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Pectoralis_minor.png/200px-Pectoralis_minor.png xref: ncithesaurus:Pectoralis_Minor is_a: UBERON:0001495 ! pectoral muscle [Term] id: UBERON:0001101 name: external jugular vein namespace: uberon alt_id: UBERON:FMA_13110-MA_0002156 def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [Wikipedia:External_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "external jugular" EXACT [EHDAA2:0000468] synonym: "external jugular venous tree" EXACT [] xref: AAO:0010508 xref: EHDAA2:0000468 xref: EHDAA:9887 xref: EMAPA:17875 xref: FMA:13110 xref: MA:0002156 xref: OpenCyc:Mx4rvrm0c5wpEbGdrcN5Y29ycA xref: SCTID:181373000 xref: XAO:0000379 xref: galen:ExternalJugularVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:External_Jugular_Vein is_a: UBERON:0004711 ! jugular vein relationship: develops_from UBERON:0001919 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endothelium of vein [Term] id: UBERON:0001102 name: cartilage of main bronchus namespace: uberon alt_id: UBERON:FMA_13117-MA_0001846 def: "A cartilage that is part of a main bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic] synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic] synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic] synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic] synonym: "cartilaginous ring of main bronchus" EXACT [EMAPA:19092] synonym: "main bronchial cartilage" EXACT [] synonym: "main bronchus cartilage" EXACT [] synonym: "primary bronchus cartilage" EXACT [OBOL:automatic] synonym: "principal bronchus cartilage" EXACT [OBOL:automatic] xref: EMAPA:19092 xref: FMA:13117 xref: MA:0001846 is_a: UBERON:0001956 ! cartilage of bronchus is_a: UBERON:0003590 ! main bronchus connective tissue relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0001103 name: diaphragm namespace: uberon alt_id: UBERON:FMA_13295-MA_0001904 def: "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." [GO:0060539, Wikipedia:Thoracid_diaphragm] comment: The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3] The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution) subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "diaphragm muscle" EXACT [BTO:0000341] synonym: "midriff" RELATED [BTO:0000341] synonym: "phren" RELATED [BTO:0000341] synonym: "thoracic diaphragm" EXACT [] xref: BTO:0000341 xref: EFO:0000937 xref: EHDAA2:0003495 xref: EMAPA:17701 xref: EV:0100376 xref: FMA:13295 xref: GAID:158 xref: MA:0001904 xref: MAT:0000502 xref: MESH:A.02.633.567.900.300 xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA xref: SCTID:181614006 xref: VHOG:0000713 xref: ncithesaurus:Diaphragm is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0002426 ! chest muscle is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0003898 ! skeletal muscle of trunk is_a: UBERON:0004830 ! respiratory system skeletal muscle relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001104 name: anterior jugular vein namespace: uberon alt_id: UBERON:FMA_13318-MA_0002155 def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [Wikipedia:Anterior_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior external jugular vein" EXACT [] xref: FMA:13318 xref: MA:0002155 xref: SCTID:65478008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png xref: ncithesaurus:Anterior_Jugular_Vein is_a: UBERON:0004711 ! jugular vein [Term] id: UBERON:0001105 name: clavicle namespace: uberon alt_id: UBERON:FMA_13321-MA_0001329 def: "In human anatomy, the clavicle or collar bone is classified as a flat bone that makes up part of the shoulder girdle. It receives its name from the Latin clavicula ('little key') because the bone rotates along its axis like a key when the shoulder is abducted. This movement is palpable. In some people, particularly females who may have less fat in this region, the location of the bone is clearly visible as it creates a bulge in the skin. [WP,unvetted]." [Wikipedia:Clavicle] comment: The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X] Note that FMA and MA differ in whether they consider this part of the shoulder subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "collar bone" EXACT [] xref: AAO:0000761 xref: EMAPA:18721 xref: FMA:13321 xref: GAID:182 xref: MA:0001329 xref: MESH:A.02.835.232.087.227 xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA xref: SCTID:181910004 xref: VHOG:0000849 xref: galen:Clavicle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png xref: ncithesaurus:Clavicle is_a: UBERON:0002495 ! long bone is_a: UBERON:0003461 ! shoulder bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0007829 ! pectoral girdle bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: UBERON:0001106 name: cephalic vein namespace: uberon alt_id: UBERON:FMA_13324-MA_0002092 def: "In human anatomy, the cephalic vein is a superficial vein of the upper limb. It is also called the antecubital vein. It communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,unvetted]." [Wikipedia:Cephalic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cephalic vein of forearm" EXACT [] synonym: "vena cephalica antebrachii" EXACT [FMA:13324, FMA:TA] xref: EMAPA:25075 xref: FMA:13324 xref: MA:0002092 xref: OpenCyc:Mx4rwTpbQZwpEbGdrcN5Y29ycA xref: SCTID:181391005 xref: galen:CephalicVein xref: ncithesaurus:Cephalic_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001107 name: sternohyoid namespace: uberon alt_id: UBERON:FMA_13341-MA_0002383-ZFA_0000283 def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid] comment: todo - add taxon restriction subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "sternohyoidei" RELATED [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoideus" RELATED [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoidoid muscle" RELATED [Wikipedia:Sternohyoid_muscle] xref: EMAPA:19271 xref: FMA:13341 xref: MA:0002383 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Sternohyoid_muscle.PNG/200px-Sternohyoid_muscle.PNG xref: ncithesaurus:Sternohyoid is_a: UBERON:0008523 ! infrahyoid muscle [Term] id: UBERON:0001108 name: omohyoid namespace: uberon alt_id: UBERON:FMA_13342-MA_0002348 def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:13342 xref: MA:0002348 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Gray1210.png/200px-Gray1210.png xref: ncithesaurus:Omohyoid is_a: UBERON:0008523 ! infrahyoid muscle [Term] id: UBERON:0001109 name: sternothyroid namespace: uberon alt_id: UBERON:FMA_13343-MA_0002386 def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:19272 xref: FMA:13343 xref: MA:0002386 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Sternothyroideus.png/200px-Sternothyroideus.png xref: ncithesaurus:Sternothyroid is_a: UBERON:0008523 ! infrahyoid muscle [Term] id: UBERON:0001110 name: thyrohyoid namespace: uberon alt_id: UBERON:FMA_13344-MA_0002393 def: "The Thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:19273 xref: EMAPA:25143 xref: FMA:13344 xref: MA:0002393 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Thyrohyoid_muscle.PNG/200px-Thyrohyoid_muscle.PNG xref: ncithesaurus:Thyrohyoid is_a: UBERON:0008523 ! infrahyoid muscle [Term] id: UBERON:0001111 name: intercostal muscle namespace: uberon alt_id: UBERON:FMA_13354-MA_0002324 def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Intercostal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intercostales" EXACT [] xref: EFO:0001368 xref: EHDAA2:0000841 xref: EHDAA:5988 xref: FMA:13354 xref: GAID:159 xref: MA:0002324 xref: MESH:A.02.633.567.900.500 xref: OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA xref: SCTID:181746004 xref: VHOG:0000903 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png xref: ncithesaurus:Intercostal_Muscle is_a: UBERON:0002426 ! chest muscle [Term] id: UBERON:0001112 name: latissimus dorsi namespace: uberon alt_id: UBERON:FMA_13357-MA_0002331 def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]." [Wikipedia:Latissimus_dorsi] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EFO:0003067 xref: EHDAA2:0000932 xref: EHDAA:8307 xref: EMAPA:18178 xref: FMA:13357 xref: MA:0002331 xref: VHOG:0000930 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001113 name: lobe of liver namespace: uberon alt_id: UBERON:FMA_13361-MA_0000360 def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes] comment: editor note: some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts synonym: "hepatic lobe" EXACT [] synonym: "liver lobe" EXACT [] synonym: "lobus hepatis" EXACT [] xref: EMAPA:18306 xref: FMA:13361 xref: MA:0000360 xref: SCTID:245378000 xref: ncithesaurus:Liver_Lobe is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001114 name: right lobe of liver namespace: uberon alt_id: UBERON:FMA_13362-MA_0000363 def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossC&: the porta and the fossC& for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "gall bladder lobe" RELATED SENSU [ZFA:0005173] synonym: "liver right lobe" EXACT [] synonym: "right liver lobe" EXACT [ZFA:0005173] xref: EHDAA2:0001008 xref: EHDAA:4001 xref: EMAPA:18311 xref: FMA:13362 xref: MA:0000363 xref: SCTID:362182008 xref: VHOG:0001424 xref: ZFA:0005173 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: ncithesaurus:Right_Lobe_of_the_Liver is_a: UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001115 name: left lobe of liver namespace: uberon alt_id: UBERON:FMA_13363-MA_0000361 def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "left liver lobe" EXACT [] synonym: "liver left lobe" EXACT [] xref: EHDAA2:0001000 xref: EHDAA:3995 xref: EMAPA:18307 xref: FMA:13363 xref: MA:0000361 xref: SCTID:362183003 xref: VHOG:0001423 xref: ZFA:0005172 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: ncithesaurus:Left_Lobe_of_the_Liver is_a: UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001116 name: quadrate lobe of liver namespace: uberon alt_id: UBERON:FMA_13364-MA_0000365 def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [Wikipedia:Quadrate_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "liver quadrate lobe" EXACT [] synonym: "lobus quadratus" EXACT [] xref: EHDAA2:0001012 xref: EHDAA:8082 xref: EMAPA:18318 xref: FMA:13364 xref: MA:0000365 xref: SCTID:279929003 xref: VHOG:0000509 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: ncithesaurus:Lobus_Quadratus is_a: UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0001117 name: caudate lobe of liver namespace: uberon alt_id: UBERON:FMA_13365-MA_0000364 def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [Wikipedia:Caudate_lobe_of_liver] comment: Editor/taxon notes: Check left vs right in mouse and human subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "couinaud hepatic segment i" EXACT [FMA:13365] synonym: "hepatovenous segment i" EXACT [] synonym: "liver caudate lobe" EXACT [] synonym: "liver caudate process" RELATED [] synonym: "lobus caudatus" EXACT [] synonym: "pars posterior hepatis" EXACT [FMA:13365, FMA:TA] synonym: "posterior hepatic segment i" EXACT [] synonym: "posterior liver" EXACT [] synonym: "posterior part of liver" EXACT [] synonym: "segment i of liver" EXACT [] synonym: "segmentum hepatis i" EXACT [FMA:13365, FMA:TA] synonym: "spiegelian lobe" EXACT [] synonym: "spigel lobe" EXACT [] xref: EHDAA2:0001005 xref: EHDAA:6990 xref: EMAPA:18313 xref: FMA:13365 xref: MA:0000364 xref: SCTID:362184009 xref: VHOG:0000508 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: ncithesaurus:Lobus_Caudatus is_a: UBERON:0001114 ! right lobe of liver relationship: part_of UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0001118 name: lobe of thyroid gland namespace: uberon alt_id: UBERON:FMA_13367-MA_0000131 def: "The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciC&, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids. [WP,unvetted]." [Wikipedia:Lobes_of_thyroid_gland] comment: This class was created automatically from a combination of ontologies synonym: "lobus (glandula thyroidea)" EXACT [] synonym: "thyroid gland lobe" EXACT [] synonym: "thyroid lobe" EXACT [] xref: EHDAA2:0002032 xref: EMAPA:18196 xref: EMAPA:18830 xref: FMA:13367 xref: MA:0000131 xref: SCTID:245537001 xref: VHOG:0000732 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png xref: ncithesaurus:Thyroid_Gland_Lobe is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001119 name: right lobe of thyroid gland namespace: uberon alt_id: UBERON:FMA_13368-MA_0000729 comment: This class was created automatically from a combination of ontologies synonym: "lobus dexter (glandula thyroidea)" EXACT [] synonym: "right thyroid lobe" EXACT [] synonym: "thyroid gland right lobe" EXACT [] xref: EHDAA2:0001759 xref: FMA:13368 xref: MA:0000729 xref: SCTID:170482008 xref: VHOG:0000733 xref: ncithesaurus:Right_Thyroid_Gland_Lobe is_a: UBERON:0001118 ! lobe of thyroid gland [Term] id: UBERON:0001120 name: left lobe of thyroid gland namespace: uberon alt_id: UBERON:FMA_13369-MA_0000728 comment: This class was created automatically from a combination of ontologies synonym: "left thyroid lobe" EXACT [] synonym: "lobus sinister (glandula thyroidea)" EXACT [] synonym: "thyroid gland left lobe" EXACT [] xref: EHDAA2:0000965 xref: FMA:13369 xref: MA:0000728 xref: SCTID:170784008 xref: VHOG:0000734 xref: ncithesaurus:Left_Thyroid_Gland_Lobe is_a: UBERON:0001118 ! lobe of thyroid gland [Term] id: UBERON:0001121 name: longus colli namespace: uberon alt_id: UBERON:FMA_13370-MA_0002341 def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebrC& and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebrC&; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebrC&. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebrC&, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebrC&. [WP,unvetted]." [Wikipedia:Longus_colli] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "longi colli" RELATED [Wikipedia:Longus_colli_muscle] synonym: "longus colli muscle" EXACT [Wikipedia:Longus_colli_muscle] xref: FMA:13370 xref: MA:0002341 xref: SCTID:244836009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Longus_colli.png/200px-Longus_colli.png xref: ncithesaurus:Longus_Colli is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0005178 ! thoracic cavity organ relationship: part_of UBERON:0008818 ! superior mediastinum [Term] id: UBERON:0001122 name: scalenus medius namespace: uberon alt_id: UBERON:FMA_13386-MA_0002370 def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebrC&. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [Wikipedia:Scalenus_medius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "medial scalene muscle" EXACT [] synonym: "middle scalene" EXACT [] synonym: "musculus scalenus medius" EXACT [FMA:13386, FMA:TA] xref: FMA:13386 xref: MA:0002370 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Scalenus_medius.png/200px-Scalenus_medius.png xref: ncithesaurus:Scalenus_Medius is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001123 name: scalenus posterior namespace: uberon alt_id: UBERON:FMA_13387-MA_0002369 def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebrC&, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the Serratus anterior. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [Wikipedia:Scalenus_posterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus scalenus posterior" EXACT [FMA:13387, FMA:TA] synonym: "posterior scalene" EXACT [] synonym: "posterior scalene muscle" EXACT [] synonym: "scalenus dorsalis" EXACT [] xref: FMA:13387 xref: MA:0002369 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f3/Scalenus_posterior.png/200px-Scalenus_posterior.png xref: ncithesaurus:Scalenus_Dorsalis is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001124 name: tetrapod scapula namespace: uberon alt_id: UBERON:FMA_13394-MA_0001330-ZFA_0000583 def: "In human anatomy, the scapula, omo (Medical Latin), or shoulder blade, is the bone that connects the humerus (arm bone) with the clavicle (collar bone). The scapula forms the posterior (back) located part of the shoulder girdle. In humans, it is a flat bone, roughly triangular in shape, placed on a posterolateral aspect of the thoracic cage. [WP,unvetted]." [Wikipedia:Scapula] comment: present in all tetrapods with even vestiges of anterior limbs, e.g., turtles & birds & mammals subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "scapula bone" RELATED [BTO:0001218] synonym: "shoulder blade" EXACT [] xref: AAO:0000751 xref: BTO:0001218 xref: EFO:0001400 xref: EMAPA:18722 xref: FMA:13394 xref: GAID:186 xref: MA:0001330 xref: OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA xref: VHOG:0001398 xref: galen:Scapula xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png xref: ncithesaurus:Scapula is_a: UBERON:0003461 ! shoulder bone is_a: UBERON:0006849 ! scapula relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001125 name: serratus anterior namespace: uberon alt_id: UBERON:FMA_13397-MA_0002378 def: "The serratus anterior is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [Wikipedia:Serratus_anterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Boxer's muscle" EXACT [] synonym: "serratus anterior muscle" EXACT [] synonym: "serratus ventralis" EXACT [] xref: EHDAA2:0001832 xref: EHDAA:9463 xref: EMAPA:18525 xref: FMA:13397 xref: MA:0002378 xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA xref: SCTID:181748003 xref: VHOG:0000679 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Serratus_anterior.png/200px-Serratus_anterior.png xref: ncithesaurus:Serratus_Ventralis is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001126 name: serratus posterior superior namespace: uberon alt_id: UBERON:FMA_13401-MA_0002377 def: "The Serratus posterior superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebrC& and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [Wikipedia:Serratus_posterior_superior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "serratus dorsalis cranialis" EXACT [] synonym: "superior serratus posterior" EXACT [] xref: FMA:13401 xref: MA:0002377 xref: SCTID:244935007 xref: ncithesaurus:Serratus_Dorsalis_Cranialis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001127 name: serratus posterior inferior namespace: uberon alt_id: UBERON:FMA_13402-MA_0002376 def: "The Serratus posterior inferior muscle (or posterior serratus) is a muscle of the human body. [WP,unvetted]." [Wikipedia:Serratus_posterior_inferior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior serratus posterior" EXACT [] synonym: "serratus dorsalis caudalis" EXACT [] xref: FMA:13402 xref: MA:0002376 xref: SCTID:244936008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/200px-Serratus_posterior.PNG xref: ncithesaurus:Serratus_Dorsalis_Caudalis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001128 name: sternocleidomastoid namespace: uberon alt_id: UBERON:FMA_13407-MA_0002384 def: "In human anatomy, the sternocleidomastoid muscle, also known as sternomastoid and commonly abbreviated as SCM, is a paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sternocleidomastoid muscle" EXACT [BTO:0005125] synonym: "sternomastoid" EXACT [] xref: BTO:0005125 xref: EMAPA:25137 xref: FMA:13407 xref: MA:0002384 xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA xref: SCTID:181741009 xref: VHOG:0000853 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray512.png/200px-Gray512.png xref: ncithesaurus:Sternocleidomastoid_Muscle is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001129 name: subscapularis namespace: uberon alt_id: UBERON:FMA_13413-MA_0002388 def: "The Subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [Wikipedia:Subscapularis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "subscapularis muscle" EXACT [] xref: EHDAA2:0001943 xref: EHDAA:8317 xref: EMAPA:18181 xref: FMA:13413 xref: MA:0002388 xref: OpenCyc:Mx4rviCRIJwpEbGdrcN5Y29ycA xref: SCTID:277446000 xref: VHOG:0000850 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png xref: ncithesaurus:Subscapularis is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001130 name: vertebral column namespace: uberon alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559 def: "." [Wikipedia:Vertebral_column] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "backbone" NARROW [FMA:13478] synonym: "columna vertebralis" RELATED [BTO:0000818] synonym: "dorsal spine" RELATED [BTO:0000818] synonym: "spinal column" RELATED [MESH:A.02.835.232.834] synonym: "spine" BROAD [FMA:13478] synonym: "vertebral column skeleton" RELATED [AAO:0000699] xref: AAO:0000699 xref: AAO:0000734 xref: BTO:0000818 xref: EFO:0001369 xref: EHDA:10119 xref: EHDAA:2895 xref: EMAPA:16666 xref: FMA:13478 xref: GAID:106 xref: MA:0002416 xref: MESH:A.02.835.232.834 xref: NIF_Subcellular:sao1145756102 xref: OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA xref: SCTID:44300000 xref: TAO:0001559 xref: VHOG:0001142 xref: XAO:0003074 xref: ZFA:0001559 xref: galen:SpinalColumn xref: ncithesaurus:Vertebral_Column is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0009568 ! trunk region of vertebral column is_a: UBERON:0004247 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! back bone relationship: part_of UBERON:0001137 ! back relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0001131 name: vertebral foramen namespace: uberon alt_id: UBERON:FMA_13479-MA_0001454 def: "In a typical vertebra, the vertebral foramen is the foramen formed by the anterior segment, and the posterior part, the vertebral arch. The vertebral foramen begins at cervical vertebrae #1 and continues inferior to lumbar vertebrae #5. Within this foramen the spinal cord and associated meninges are housed. [WP,unvetted]." [Wikipedia:Vertebral_foramen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "vertebra neural canal" EXACT [] xref: AAO:0000729 xref: FMA:13479 xref: MA:0001454 xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA xref: SCTID:280734009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Foramenvertebrale.png/200px-Foramenvertebrale.png is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001132 name: parathyroid gland namespace: uberon alt_id: UBERON:FMA_13890-MA_0000128-MIAA_0000082-XAO_0000167 def: "The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]. Parathyroid glands control the amount of calcium in the blood and within the bones[WP]." [Wikipedia:Parathyroid_gland] comment: Development notes: table 13.1 of Kardong is used to create the taxon-specific developmental relationships here, although some omissions are made for simplicity. Additional notes: Parathyroid glands are found in all adult tetrapods, although they vary in their number, and in their exact position. Mammals typically have four parathyroids, while other groups typically have six. Fish do not possess parathyroid glands, although the ultimobranchial glands, which are found close to the oesophagus, may have a similar function and could even be homologous with the tetrapod parathyroids. Even these glands are absent in the most primitive vertebrates, the jawless fish, but as these species have no bone in their skeletons, only cartilage, it may be that they have less need to regulate calcium metabolism. The conserved homology of genes and calcium-sensing receptors in fish gills with those in the parathryroid glands of birds and mammals is recognized by evolutionary developmental biology as evolution-using genes and gene networks in novel ways to generate new structures with some similar functions and novel functions[WP]. The parathryoid gland is not formed in fish, but is only found in tetrapods. In humans and chick it emerges from pouches 3 and 4, but in mice it is exclusively generated by the third pouch[PMID:16313389] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "parathyroid" EXACT [] synonym: "parathyroid secreting cell" RELATED [] xref: AAO:0010545 xref: BTO:0000997 xref: EFO:0000862 xref: EV:0100134 xref: FMA:13890 xref: GAID:452 xref: MA:0000128 xref: MAT:0000082 xref: MESH:A.06.407.560 xref: MIAA:0000082 xref: SCTID:181121007 xref: VHOG:0001188 xref: XAO:0000167 xref: ncithesaurus:Parathyroid_Gland is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000949 ! endocrine system relationship: develops_from UBERON:0003092 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ultimobranchial body relationship: develops_from UBERON:0003114 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal arch 3 [Term] id: UBERON:0001133 name: cardiac muscle tissue namespace: uberon alt_id: UBERON:FMA_14068-MA_0002441 def: "Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]." [FMA:14068] comment: check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac muscle" EXACT [] synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic] xref: AAO:0010245 xref: AEO:0000142 xref: BTO:0000199 xref: EHDAA2:0003142 xref: FMA:14068 xref: MA:0002441 xref: ZFA:0005280 xref: galen:CardiacMuscle xref: galen:CardiacMuscleTissue xref: ncithesaurus:Heart_Muscle is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle organ relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002349 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! myocardium disjoint_from: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0001134 name: skeletal muscle tissue namespace: uberon alt_id: UBERON:FMA_14069-MA_0002439 def: "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP]." [Wikipedia:Skeletal_muscle] comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Consider FBbt:00005073 - somatic muscle. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "skeletal muscle" EXACT [] synonym: "skeletal muscle organ" RELATED [] synonym: "skeletal muscle system" RELATED [BTO:0001103] synonym: "somatic muscle" RELATED [BTO:0001103] xref: AAO:0011099 xref: BTO:0001103 xref: EFO:0000888 xref: EHDAA2:0001842 xref: EHDAA:2923 xref: EHDAA:5035 xref: EHDAA:5043 xref: EHDAA:5978 xref: EHDAA:5984 xref: EHDAA:8277 xref: EHDAA:8291 xref: EHDAA:8326 xref: EHDAA:9146 xref: EV:0100377 xref: FMA:14069 xref: GAID:141 xref: MA:0002439 xref: MAT:0000302 xref: MESH:A.02.633.567 xref: MIAA:0000302 xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA xref: SCTID:426215008 xref: VHOG:0000319 xref: XAO:0000174 xref: ZFA:0005277 xref: ncithesaurus:Skeletal_Muscle_Tissue is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle organ is_a: UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! muscle organ relationship: part_of UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! muscle organ [Term] id: UBERON:0001135 name: smooth muscle tissue namespace: uberon alt_id: UBERON:FMA_14070-MA_0002440 def: "Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue] comment: terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "involuntary muscle" EXACT [] synonym: "non-striated muscle" EXACT [] synonym: "smooth muscle" EXACT [] synonym: "textus muscularis nonstriatus" EXACT [FMA:14070, FMA:TA] synonym: "visceral muscle" NARROW SENSU [] synonym: "visceral muscle tissue" NARROW SENSU [] xref: AAO:0010244 xref: AEO:0000141 xref: BTO:0001260 xref: EFO:0000889 xref: EHDAA2:0003141 xref: EMAPA:18923 xref: EV:0100378 xref: FBbt:00003525 xref: FMA:14070 xref: GAID:167 xref: MA:0000166 xref: MAT:0000303 xref: MESH:A.02.633.570 xref: MIAA:0000303 xref: OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA xref: VHOG:0001246 xref: WBbt:0005781 xref: XAO:0000175 xref: ZFA:0005274 xref: galen:SmoothMuscle xref: galen:SmoothMuscleTissue xref: ncithesaurus:Smooth_Muscle_Tissue is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle organ is_a: UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! muscle organ relationship: develops_from UBERON:0003081 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! lateral plate mesoderm relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism disjoint_from: UBERON:0002036 ! striated muscle tissue [Term] id: UBERON:0001136 name: mesothelium namespace: uberon alt_id: UBERON:FMA_14074-MA_0000565 def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri)." [Wikipedia:Mesothelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "meso-epithelium" EXACT [] xref: AEO:0000111 xref: BTO:0002422 xref: EHDAA2:0003111 xref: EHDAA:2331 xref: EHDAA:2339 xref: EHDAA:2349 xref: EHDAA:295 xref: EHDAA:6073 xref: EHDAA:640 xref: EHDAA:646 xref: FMA:14074 xref: MA:0000565 xref: SCTID:361918002 xref: ncithesaurus:Mesothelium is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004458 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! body cavity or lining [Term] id: UBERON:0001137 name: back namespace: uberon alt_id: UBERON:FMA_14181-MA_0000020 def: "In humans: large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body[WP]." [Wikipedia:Back] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "back of body proper" EXACT [FMA:14181] synonym: "back of trunk" EXACT [MA:0000020] xref: BTO:0001713 xref: EFO:0001405 xref: FMA:14181 xref: GAID:30 xref: MA:0000020 xref: MESH:A.01.176 xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA xref: galen:Back xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/432px-Gray-back.PNG/200px-432px-Gray-back.PNG xref: ncithesaurus:Back is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001138 name: superior mesenteric vein namespace: uberon alt_id: UBERON:FMA_14332-MA_0002179 def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Superior_mesenteric_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "upper mesenteric vein" RELATED [BTO:0002783] xref: BTO:0002783 xref: EHDAA2:0001951 xref: EHDAA:5414 xref: EMAPA:18643 xref: FMA:14332 xref: MA:0002179 xref: OpenCyc:Mx4rwFjmM5wpEbGdrcN5Y29ycA xref: SCTID:278031001 xref: VHOG:0000552 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: ncithesaurus:Superior_Mesenteric_Vein is_a: UBERON:0005617 ! mesenteric vein [Term] id: UBERON:0001139 name: common iliac vein namespace: uberon alt_id: UBERON:FMA_14333-MA_0002143 def: "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. [WP,unvetted]." [Wikipedia:Common_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "common iliac venous tree" EXACT [] xref: EMAPA:17874 xref: FMA:14333 xref: MA:0002143 xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA xref: SCTID:181398004 xref: galen:CommonIliacVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif xref: ncithesaurus:Common_Iliac_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0005610 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! iliac vein [Term] id: UBERON:0001140 name: renal vein namespace: uberon alt_id: UBERON:FMA_14334-MA_0002210 def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Renal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "kidney vein" EXACT [OBOL:automatic] synonym: "kidney venous blood vessel" EXACT [MA:0002591] synonym: "renal venous tree" EXACT [] synonym: "vein of kidney" EXACT [OBOL:automatic] xref: BTO:0002681 xref: EHDAA2:0001602 xref: EHDAA:8722 xref: EMAPA:19223 xref: EMAPA:28376 xref: FMA:14334 xref: GAID:544 xref: MA:0002210 xref: MA:0002591 xref: MESH:A.07.231.908.752 xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA xref: SCTID:116358006 xref: galen:RenalVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png xref: ncithesaurus:Renal_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003517 ! kidney blood vessel relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001141 name: right renal vein namespace: uberon alt_id: UBERON:FMA_14335-MA_0002212 comment: This class was created automatically from a combination of ontologies xref: FMA:14335 xref: MA:0002212 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA xref: SCTID:116357001 xref: ncithesaurus:Right_Renal_Vein is_a: UBERON:0001140 ! renal vein [Term] id: UBERON:0001142 name: left renal vein namespace: uberon alt_id: UBERON:FMA_14336-MA_0002211 def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Left_renal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:14336 xref: MA:0002211 xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA xref: SCTID:116356005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png xref: ncithesaurus:Left_Renal_Vein is_a: UBERON:0001140 ! renal vein [Term] id: UBERON:0001143 name: hepatic vein namespace: uberon alt_id: UBERON:FMA_14337-XAO_0000387-ZFA_0000670 def: "In human anatomy, the hepatic veins are the blood vessels that drain de-oxygenated blood from the liver and blood cleaned by the liver into the inferior vena cava. They arise from the substance of the liver, more specifically the central vein of the liver lobule. None of the hepatic veins have valves. [WP,unvetted]." [Wikipedia:Hepatic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "hepatic veins" RELATED [] synonym: "liver vein" EXACT [OBOL:automatic] synonym: "vein of liver" EXACT [OBOL:automatic] synonym: "vena hepatica" EXACT [] xref: AAO:0010216 xref: EMAPA:19221 xref: FMA:14337 xref: GAID:534 xref: MESH:A.07.231.908.380 xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA xref: SCTID:278191001 xref: TAO:0000670 xref: XAO:0000387 xref: ZFA:0000670 xref: galen:HepaticVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png xref: ncithesaurus:Hepatic_Vein is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001638 ! vein is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0006877 ! vasculature of liver relationship: develops_from UBERON:0001919 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endothelium of vein [Term] id: UBERON:0001144 name: testicular vein namespace: uberon alt_id: UBERON:FMA_14344-MA_0002234 def: "The testicular vein (or spermatic vein), the male gonadal vein, carries deoxygenated blood from its corresponding testis to the inferior vena cava or one of its tributaries. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis: the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel. [WP,unvetted]." [Wikipedia:Testicular_vein, https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376] comment: Comment: todo - check testicular vs spermatic vein (MA:0002218) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "male gonadal vein" EXACT [Wikipedia:Testicular_vein] synonym: "spermatic vein" EXACT [Wikipedia:Testicular_vein] synonym: "testicle vein" EXACT [OBOL:automatic] synonym: "testicular venous tree" EXACT [Wikipedia:Testicular_vein] synonym: "vein of testicle" EXACT [OBOL:automatic] synonym: "vena tesicularis" RELATED [BTO:0002678] xref: BTO:0002678 xref: EMAPA:18647 xref: FMA:14344 xref: MA:0002218 xref: MA:0002234 xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA xref: SCTID:264496006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Gray590.png/200px-Gray590.png xref: ncithesaurus:Spermatic_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003848 ! gonadal vein [Term] id: UBERON:0001145 name: ovarian vein namespace: uberon alt_id: UBERON:FMA_14346-MA_0002186 def: "The ovarian vein, the female gonadal vein, carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries. It is the female equivalent of the testicular vein, and is the venous counterpart of the ovarian artery. It can be found in the suspensory ligament of the ovary. It a paired vein, with one supplying each ovary. The right ovarian vein travels through the suspensatory ligament of the ovary and generally joins the inferior vena cava. The left ovarian vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. [WP,unvetted]." [Wikipedia:Ovarian_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic] synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system vein" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system vein" EXACT [OBOL:automatic] synonym: "ovary vein" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonad" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonada" EXACT [OBOL:automatic] synonym: "vein of gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of ovary" EXACT [OBOL:automatic] xref: EMAPA:18644 xref: FMA:14346 xref: MA:0002186 xref: OpenCyc:Mx4rvrST5ZwpEbGdrcN5Y29ycA xref: SCTID:278193003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Ovarschaf.jpg/200px-Ovarschaf.jpg xref: ncithesaurus:Ovarian_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0004911 ! epithelium of female gonad [Term] id: UBERON:0001146 name: suprarenal vein namespace: uberon alt_id: UBERON:FMA_14348-MA_0002229 def: "The Suprarenal veins are two in number: the right ends in the inferior vena cava. the left ends in the left renal or left inferior phrenic vein. They receive blood from the adrenal glands and will sometimes form anastomoses with the inferior phrenic veins. [WP,unvetted]." [Wikipedia:Suprarenal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0001966 xref: EHDAA:8731 xref: FMA:14348 xref: MA:0002229 xref: SCTID:278194009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png xref: ncithesaurus:Suprarenal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001147 name: trunk of peripheral nerve namespace: uberon alt_id: UBERON:FMA_14383-MA_0000229 comment: This class was created automatically from a combination of ontologies synonym: "peripheral nerve trunk" EXACT [] synonym: "peripheral neural trunk" EXACT [] xref: EMAPA:16986 xref: FMA:14383 xref: MA:0000229 is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0000010 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! peripheral nervous system [Term] id: UBERON:0001148 name: median nerve namespace: uberon alt_id: UBERON:FMA_14385-MA_0001168 def: "The median nerve is a nerve in humans and other animals. It is in the upper limb. It is one of the five main nerves originating from the brachial plexus. The median nerve is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1. The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP,unvetted]." [Wikipedia:Median_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0001086 xref: EHDAA:5648 xref: EMAPA:17277 xref: FMA:14385 xref: GAID:843 xref: MA:0001168 xref: MESH:A.08.800.800.720.050.500 xref: OpenCyc:Mx4rwF4HF5wpEbGdrcN5Y29ycA xref: SCTID:181010001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif xref: ncithesaurus:Median_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001149 name: bare area of liver namespace: uberon alt_id: UBERON:FMA_14480-MA_0000359 comment: This class was created automatically from a combination of ontologies synonym: "area nuda (hepar)" EXACT [] synonym: "area nuda hepatis" EXACT [] synonym: "liver bare area" EXACT [] xref: EMAPA:17945 xref: EMAPA:18308 xref: EMAPA:18312 xref: FMA:14480 xref: MA:0000359 xref: SCTID:279965008 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0001150 name: body of pancreas namespace: uberon alt_id: UBERON:FMA_14518-MA_0000121 def: "The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]." [Wikipedia:Body_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pancreas body" EXACT [] synonym: "pancreas corpus" RELATED [] synonym: "pancreatic body" EXACT [] xref: EHDAA2:0001368 xref: EHDAA:9178 xref: EMAPA:17504 xref: EMAPA:18817 xref: FMA:14518 xref: MA:0000121 xref: SCTID:362202004 xref: VHOG:0000451 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg xref: ncithesaurus:Body_of_the_Pancreas is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001151 name: tail of pancreas namespace: uberon alt_id: UBERON:FMA_14519-MA_0000123 def: "The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]." [Wikipedia:Tail_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "left extremity of pancreas" EXACT [FMA:14519] synonym: "pancreas tail" EXACT [] synonym: "pancreatic tail" EXACT [FMA:14519] xref: EHDAA2:0001390 xref: EMAPA:17511 xref: EMAPA:18824 xref: FMA:14519 xref: MA:0000123 xref: SCTID:245382003 xref: VHOG:0000452 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg xref: ncithesaurus:Tail_of_the_Pancreas is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001152 name: cystic duct namespace: uberon alt_id: UBERON:FMA_14539-MA_0000355 def: "The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]." [Wikipedia:Cystic_duct] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: EHDAA2:0000333 xref: EHDAA:3045 xref: EMAPA:16841 xref: FMA:14539 xref: GAID:290 xref: MA:0000355 xref: MESH:A.03.159.183.419 xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA xref: SCTID:245398005 xref: VHOG:0000213 xref: ZFA:0005166 xref: galen:CysticDuct xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png xref: ncithesaurus:Cystic_Duct is_a: UBERON:0003703 ! extrahepatic bile duct relationship: part_of UBERON:0001173 ! biliary tree [Term] id: UBERON:0001153 name: caecum namespace: uberon alt_id: UBERON:FMA_14541-MA_0000334-MIAA_0000288 def: "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum] comment: A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates.[WP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "blind intestine" RELATED [BTO:0000166] synonym: "blindgut" RELATED [BTO:0000166] synonym: "cecum" EXACT [FMA:14541] synonym: "intestinum caecum" RELATED [BTO:0000166] synonym: "intestinum crassum caecum" EXACT [] synonym: "intestinum crassum cecum" RELATED [BTO:0000166] xref: BTO:0000166 xref: EFO:0000850 xref: EHDAA2:0000206 xref: EHDAA:3913 xref: EV:0100397 xref: FMA:14541 xref: GAID:307 xref: MA:0000334 xref: MESH:A.03.492.411.495.209 xref: MIAA:0000288 xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA xref: SCTID:181256004 xref: VHOG:0001559 xref: galen:Cecum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png xref: ncithesaurus:Cecum is_a: UBERON:0009854 ! digestive tract diverticulum relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:0001154 name: appendix namespace: uberon alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287 def: "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [FMA:14542, Wikipedia:Vermiform_appendix] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "apex of cecum" RELATED [] synonym: "appendix vermiformis" EXACT [FMA:14542, FMA:TA] synonym: "caecal appendix" EXACT [] synonym: "vermiform appendix" EXACT [] synonym: "vermix" EXACT [] xref: BTO:0000084 xref: EFO:0000849 xref: EHDAA2:0000588 xref: EV:0100076 xref: EV:0100080 xref: FMA:14542 xref: GAID:308 xref: MA:0001540 xref: MAT:0000287 xref: MESH:A.03.492.411.495.209.290 xref: MIAA:0000287 xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA xref: SCTID:181255000 xref: VHOG:0001306 xref: galen:AppendixVermiformis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray536.png/200px-Gray536.png xref: ncithesaurus:Vermiform_Appendix is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001153 ! caecum relationship: part_of UBERON:0004907 ! lower digestive tract [Term] id: UBERON:0001155 name: colon namespace: uberon alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706 def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [Wikipedia:Colon_(anatomy), ZFIN:curator] comment: TODO: abstract this such that it legitimately covers all vertebrates subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "hindgut" RELATED [] synonym: "large bowel" EXACT [] synonym: "posterior intestine" NARROW [] synonym: "posterior intestine - zebrafish" BROAD [] xref: AAO:0010400 xref: BTO:0000269 xref: EFO:0000361 xref: EHDAA2:0000779 xref: EMAPA:18939 xref: EV:0100079 xref: FMA:14543 xref: GAID:309 xref: MA:0000335 xref: MAP:0000001 xref: MAT:0000526 xref: MESH:A.03.492.411.495.356 xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA xref: SCTID:302508007 xref: TAO:0000706 xref: VHOG:0000648 xref: XAO:0000243 xref: ZFA:0000706 xref: galen:Colon xref: ncithesaurus:Colon is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000059 ! large intestine [Term] id: UBERON:0001156 name: ascending colon namespace: uberon alt_id: UBERON:FMA_14545-MA_0001541-MIAA_0000311 def: "Organ part which is continuous with the cecum proximally and the transverse colon distally.[FMA]" [FMA:FMA, Wikipedia:Ascending_colon] comment: Note that in MA, this is a subclass of colon subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000270 xref: EFO:0000843 xref: FMA:14545 xref: MA:0001541 xref: MAT:0000311 xref: MIAA:0000311 xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA xref: SCTID:362162009 xref: galen:AscendingColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png xref: ncithesaurus:Ascending_Colon is_a: UBERON:0000168 ! segment of colon [Term] id: UBERON:0001157 name: transverse colon namespace: uberon alt_id: UBERON:FMA_14546-MA_0001543-MIAA_0000312 def: "The transverse colon the longest and most movable part of the colon, passes with a downward convexity from the right hypochondrium region across the abdomen, opposite the confines of the epigastric and umbilical zones, into the left hypochondrium region, where it curves sharply on itself beneath the lower end of the spleen, forming the splenic or left colic flexure. The right colic flexure is adjacent to the liver. In its course, it describes an arch, the concavity of which is directed backward and a little upward; toward its splenic end there is often an abrupt U-shaped curve which may descend lower than the main curve. It is almost completely invested by peritoneum, and is connected to the inferior border of the pancreas by a large and wide duplicature of that membrane, the transverse mesocolon. It is in relation, by its upper surface, with the liver and gall-bladder, the greater curvature of the stomach, and the lower end of the spleen; by its under surface, with the small intestine; by its anterior surface, with the anterior layers of the greater omentum and the abdominal parietes; its posterior surface is in relation from right to left with the descending portion of the duodenum, the head of the pancreas, and some of the convolutions of the jejunum and ileum. [WP,unvetted]." [Wikipedia:Transverse_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000272 xref: EFO:0000844 xref: FMA:14546 xref: MA:0001543 xref: MAT:0000312 xref: MIAA:0000312 xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA xref: SCTID:362163004 xref: galen:TransverseColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png xref: ncithesaurus:Transverse_Colon is_a: UBERON:0000168 ! segment of colon [Term] id: UBERON:0001158 name: descending colon namespace: uberon alt_id: UBERON:FMA_14547-MA_0001542-MIAA_0000313 def: "The descending colon of humans passes downward through the left hypochondrium and lumbar regions, along the lateral border of the left kidney. At the lower end of the kidney it turns medialward toward the lateral border of the psoas muscle, and then descends, in the angle between psoas and quadratus lumborum, to the crest of the ilium, where it ends in the sigmoid colon. The peritoneum covers its anterior surface and sides, and therefore the descending colon is described as retroperitoneal. (The transverse colon and sigmoid colon, which are immediately proximal and distal, are intraperitoneal). Its posterior surface is connected by areolar tissue with the lower and lateral part of the left kidney, the aponeurotic origin of the transversus abdominis, and the quadratus lumborum. It is smaller in caliber and more deeply placed than the ascending colon. It has a mesentery in 33% of people, and is therefore more frequently covered with peritoneum on its posterior surface than the ascending colon (which has a mesentery in 25% of people). However, it is less likely to undergo volvulus than the ascending colon. In front of it are some coils of small intestine. [WP,unvetted]." [Wikipedia:Descending_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000641 xref: EFO:0000845 xref: FMA:14547 xref: MA:0001542 xref: MAT:0000313 xref: MIAA:0000313 xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA xref: SCTID:362165006 xref: galen:DescendingColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray1223.png/200px-Gray1223.png xref: ncithesaurus:Descending_Colon is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000168 ! segment of colon [Term] id: UBERON:0001159 name: sigmoid colon namespace: uberon alt_id: UBERON:FMA_14548-MIAA_0000314 def: "the part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [Wikipedia:Sigmoid_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "colon sigmoideum" RELATED [] synonym: "pelvic colon" RELATED [] synonym: "sigmoid colon" RELATED [] synonym: "sigmoid flexure" RELATED [] xref: BTO:0000645 xref: EFO:0000846 xref: FMA:14548 xref: MAT:0000314 xref: MESH:A.03.492.411.495.356.668 xref: MIAA:0000314 xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA xref: SCTID:362166007 xref: galen:SigmoidColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png xref: ncithesaurus:Sigmoid_Colon is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000168 ! segment of colon [Term] id: UBERON:0001160 name: fundus of stomach namespace: uberon alt_id: UBERON:FMA_14559-MA_0001612 def: "The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]." [GO:0014825, ISBN10:0073040584, Wikipedia:Fundus_of_stomach] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fundus gastricus" RELATED [BTO:0000502] synonym: "fundus gastricus (ventricularis)" EXACT [] synonym: "fundus gastricus ventricularis" RELATED [BTO:0000502] synonym: "fundus ventricularis" RELATED [BTO:0000502] synonym: "fundus ventriculi" RELATED [BTO:0000502] synonym: "gastric fundus" EXACT [] synonym: "stomach fundus" EXACT [] xref: BTO:0000502 xref: EFO:0002554 xref: EHDAA2:0001919 xref: EHDAA:4844 xref: FMA:14559 xref: GAID:320 xref: MA:0001612 xref: MESH:A.03.492.766.419 xref: SCTID:362139007 xref: VHOG:0000421 xref: galen:GastricFundus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: ncithesaurus:Fundus_of_the_Stomach is_a: UBERON:0009870 ! zone of stomach [Term] id: UBERON:0001161 name: body of stomach namespace: uberon alt_id: UBERON:FMA_14560-MA_0002559 def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach] comment: Note that we include this as zone of stomach even though it is not distinguished by gland type subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "corpus gastricum" RELATED [BTO:0000505] synonym: "corpus gastricum (ventriculare)" EXACT [] synonym: "corpus ventriculare" RELATED [BTO:0000505] synonym: "corpus ventriculi" RELATED [BTO:0000505] synonym: "gastric body" EXACT [] synonym: "gastric corpus" RELATED [] synonym: "stomach body" EXACT [] xref: BTO:0000505 xref: FMA:14560 xref: MA:0002559 xref: galen:GastricCorpus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: ncithesaurus:Body_of_Stomach is_a: UBERON:0009870 ! zone of stomach [Term] id: UBERON:0001162 name: cardia of stomach namespace: uberon alt_id: UBERON:0004712 alt_id: UBERON:FMA_14561-MA_0001609 def: "The opening of the esophagus into the stomach; also: the part of the stomach adjoining this opening[BTO]. The cardia is the anatomical term for the part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]" [BTO:0000198, Wikipedia:Cardia] comment: Editor notes: We follow Kardong in defining stomach regions by glands. Boundary notes: There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that \"The gastric cardia is now clearly considered to be part of the stomach\"[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP]. synonym: "antrum cardiacum" RELATED [Wikipedia:Cardia] synonym: "cardiac orifice" RELATED [Wikipedia:Cardia] synonym: "cardiac region" RELATED [Wikipedia:Cardia] synonym: "cardiac sphincter" RELATED [Wikipedia:Cardia] synonym: "cardial orifice" RELATED [Wikipedia:Cardia] synonym: "cardial part of stomach" EXACT [] synonym: "esophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "esophageal sphincter%2c lower" RELATED [Wikipedia:Cardia] synonym: "esophageal-cardiac junction" RELATED [Wikipedia:Cardia] synonym: "esophagogastric junction" RELATED [Wikipedia:Cardia] synonym: "gastric cardia" EXACT [] synonym: "gastro-esophageal junction" RELATED [Wikipedia:Cardia] synonym: "gastro-esophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "gastro-oesophageal junction" RELATED [Wikipedia:Cardia] synonym: "gastroesophageal junction" RELATED [Wikipedia:Cardia] synonym: "gastroesophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "lower esophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "pars cardiaca (gaster)" EXACT [] synonym: "pars cardiaca gastricae" EXACT [FMA:14561, FMA:TA] synonym: "stomach cardiac region" EXACT [MA:0001609] xref: BTO:0000198 xref: FMA:14561 xref: GAID:319 xref: MA:0001609 xref: MESH:A.03.492.766.163 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Illu_stomach.jpg/200px-Illu_stomach.jpg xref: ncithesaurus:Cardia is_a: UBERON:0009870 ! zone of stomach [Term] id: UBERON:0001163 name: lesser curvature of stomach namespace: uberon alt_id: UBERON:FMA_14572-MA_0001616 def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [Wikipedia:Lesser_curvature_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "stomach lesser curvature" EXACT [] xref: FMA:14572 xref: MA:0001616 xref: SCTID:362133008 xref: galen:LesserCurvatureOfStomach xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: ncithesaurus:Lesser_Curvature is_a: UBERON:0009870 ! zone of stomach [Term] id: UBERON:0001164 name: greater curvature of stomach namespace: uberon alt_id: UBERON:FMA_14574-MA_0001615 def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [Wikipedia:Greater_curvature_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "stomach greater curvature" EXACT [] xref: FMA:14574 xref: MA:0001615 xref: SCTID:362134002 xref: galen:GreaterCurvatureOfStomach xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: ncithesaurus:Greater_Curvature is_a: UBERON:0009870 ! zone of stomach [Term] id: UBERON:0001165 name: pyloric antrum namespace: uberon alt_id: UBERON:FMA_14579-MA_0001624 def: "Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]." [Wikipedia:Pyloric_antrum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "antrum of Willis" RELATED [BTO:0001732] synonym: "antrum of stomach" EXACT [] synonym: "antrum pylori" RELATED [BTO:0001732] synonym: "antrum pyloricum" RELATED [BTO:0001732] synonym: "gastric antrum" RELATED [BTO:0001732] synonym: "stomach antrum" RELATED [] synonym: "stomach pyloric antrum" EXACT [] xref: BTO:0001732 xref: EFO:0002555 xref: EMAPA:17891 xref: EMAPA:18919 xref: FMA:14579 xref: GAID:332 xref: MA:0001624 xref: MESH:A.03.492.766.716 xref: SCTID:362142001 xref: galen:PyloricAntrum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: ncithesaurus:Antrum_Pylori is_a: UBERON:0009870 ! zone of stomach relationship: part_of UBERON:0001166 ! pylorus [Term] id: UBERON:0001166 name: pylorus namespace: uberon alt_id: UBERON:FMA_14581-MA_0002560 def: "The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]." [Wikipedia:Pylorus] comment: Editor notes: We follow Kardong in defining stomach regions by glands subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pars pylorica gastricae" EXACT [FMA:14581, FMA:TA] synonym: "pyloric part of stomach" EXACT [] synonym: "pyloric region" EXACT [] synonym: "stomach pyloric region" EXACT [EHDAA2:0001580] xref: BTO:0001146 xref: EHDAA2:0001580 xref: EHDAA:4860 xref: EMAPA:17631 xref: EMAPA:18915 xref: FMA:14581 xref: GAID:333 xref: MA:0002560 xref: MESH:A.03.492.766.799 xref: SCTID:362143006 xref: VHOG:0000420 xref: galen:Pylorus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: ncithesaurus:Pylorus is_a: UBERON:0009870 ! zone of stomach [Term] id: UBERON:0001167 name: wall of stomach namespace: uberon alt_id: UBERON:FMA_14582-MA_0002692 def: "An anatomical wall that is part of a stomach [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "gastric wall" EXACT [] synonym: "stomach anatomical wall" EXACT [OBOL:automatic] synonym: "stomach wall" EXACT [] synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "ventriculus wall" EXACT [OBOL:automatic] synonym: "wall of ventriculus" EXACT [OBOL:automatic] xref: FMA:14582 xref: MA:0002692 xref: SCTID:279995000 xref: galen:WallOfStomach is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001168 name: wall of small intestine namespace: uberon alt_id: UBERON:FMA_14615-MA_0002696 def: "An anatomical wall that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic] synonym: "small bowel anatomical wall" EXACT [OBOL:automatic] synonym: "small bowel wall" EXACT [OBOL:automatic] synonym: "small intestinal wall" EXACT [] synonym: "small intestine anatomical wall" EXACT [OBOL:automatic] synonym: "small intestine wall" EXACT [] synonym: "wall of small bowel" EXACT [OBOL:automatic] xref: FMA:14615 xref: MA:0002696 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0001262 ! wall of intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001169 name: wall of large intestine namespace: uberon alt_id: UBERON:FMA_14619-MA_0002695 def: "An anatomical wall that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal wall" EXACT [] synonym: "large intestine anatomical wall" EXACT [OBOL:automatic] synonym: "large intestine wall" EXACT [] xref: FMA:14619 xref: MA:0002695 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0001262 ! wall of intestine relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001170 name: mesentery of small intestine namespace: uberon alt_id: UBERON:FMA_14643-MA_0001555 def: "the peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]." [Wikipedia:Mesentery#Mesentery_.28proper.29] synonym: "mesentery (proper)" EXACT [Wikipedia:Mesentery] synonym: "mesentery proper" EXACT [FMA:14643] synonym: "small intestinal mesentery" EXACT [FMA:14643] synonym: "small intestine mesentery" EXACT [Obol:automatic] xref: FMA:14643 xref: MA:0001555 xref: SCTID:245456008 is_a: UBERON:0001206 ! serosa of small intestine is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0007826 ! peritoneal mesentery [Term] id: UBERON:0001171 name: portal lobule namespace: uberon alt_id: UBERON:FMA_14653-MA_0002498 def: "the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992] comment: This class was created automatically from a combination of ontologies xref: FMA:14653 xref: MA:0002498 xref: ncithesaurus:Portal_Lobule is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001280 ! liver parenchyma [Term] id: UBERON:0001172 name: hepatic acinus namespace: uberon alt_id: UBERON:FMA_14654-MA_0002496 comment: This class was created automatically from a combination of ontologies synonym: "liver acinus" EXACT [] synonym: "portal acinus" EXACT [] xref: FMA:14654 xref: MA:0002496 xref: SCTID:272214009 xref: ncithesaurus:Liver_Acinus is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009842 ! acinus relationship: part_of UBERON:0001171 ! portal lobule relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0001173 name: biliary tree namespace: uberon alt_id: UBERON:FMA_14665-XAO_0000455 def: "Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "biliary tract" EXACT [] xref: AAO:0011020 xref: FMA:14665 xref: GAID:279 xref: MA:0001273 xref: MESH:A.03.159 xref: SCTID:181267003 xref: XAO:0000455 xref: ncithesaurus:Biliary_Tract is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002294 ! biliary system relationship: develops_from UBERON:0008835 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hepatic diverticulum [Term] id: UBERON:0001174 name: common bile duct namespace: uberon alt_id: UBERON:FMA_14667-MA_0001631 def: "a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ductus choledochus (biliaris)" EXACT [] xref: EHDAA2:0000303 xref: EHDAA:3981 xref: EMAPA:17201 xref: FMA:14667 xref: GAID:282 xref: MA:0001631 xref: MESH:A.03.159.183.079.300 xref: SCTID:362199009 xref: VHOG:0000214 xref: ZFA:0005165 xref: galen:CommonBileDuct xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png xref: ncithesaurus:Common_Bile_Duct is_a: UBERON:0003703 ! extrahepatic bile duct relationship: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0005171 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! hepatic duct [Term] id: UBERON:0001175 name: common hepatic duct namespace: uberon alt_id: UBERON:FMA_14668-ZFA_0001100 def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator] comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hepatic duct" RELATED [] xref: EMAPA:19101 xref: FMA:14668 xref: GAID:286 xref: MA:0002660 xref: MESH:A.03.159.183.079.600 xref: SCTID:245403006 xref: VHOG:0000220 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_liver_gallbladder.jpg/200px-Illu_liver_gallbladder.jpg xref: ncithesaurus:Common_Hepatic_Duct is_a: UBERON:0003703 ! extrahepatic bile duct relationship: part_of UBERON:0005604 ! hepatic duct extrahepatic part [Term] id: UBERON:0001176 name: right hepatic duct namespace: uberon alt_id: UBERON:FMA_14669-MA_0001639 def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034] comment: This class was created automatically from a combination of ontologies xref: EHDAA2:0001727 xref: EHDAA:3992 xref: EMAPA:18305 xref: EMAPA:19100 xref: FMA:14669 xref: MA:0001639 xref: SCTID:245401008 xref: VHOG:0000217 xref: ncithesaurus:Right_Hepatic_Duct is_a: UBERON:0003703 ! extrahepatic bile duct relationship: part_of UBERON:0005171 ! hepatic duct [Term] id: UBERON:0001177 name: left hepatic duct namespace: uberon alt_id: UBERON:FMA_14670-MA_0001638 def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035] xref: EHDAA2:0000941 xref: EHDAA:3990 xref: EMAPA:18304 xref: EMAPA:19099 xref: FMA:14670 xref: MA:0001638 xref: SCTID:245400009 xref: VHOG:0000218 xref: ncithesaurus:Left_Hepatic_Duct is_a: UBERON:0003703 ! extrahepatic bile duct relationship: part_of UBERON:0005171 ! hepatic duct [Term] id: UBERON:0001178 name: visceral peritoneum namespace: uberon alt_id: UBERON:FMA_14703-ZFA_0005132 def: "The peritoneum that covers the external surfaces of most abdominal organs." [Wikipedia:Visceral_peritoneum, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: FMA:14703 xref: SCTID:362702003 xref: TAO:0005132 xref: VHOG:0001528 xref: ZFA:0005132 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0001179 name: peritoneal cavity namespace: uberon alt_id: UBERON:FMA_14704-MA_0000054 def: "Cavity of serous sac surrounded by the peritoneum.[FMA]" [FMA:FMA, Wikipedia:Peritoneal_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cavitas peritonealis" RELATED [BTO:0001782] xref: BTO:0001782 xref: EHDAA2:0001446 xref: EMAPA:18452 xref: EMAPA:18454 xref: EMAPA:18461 xref: FMA:14704 xref: GAID:24 xref: MA:0000054 xref: MESH:A.01.047.025.600.678 xref: SCTID:181616008 xref: VHOG:0000852 xref: ncithesaurus:Peritoneal_Cavity is_a: UBERON:0002323 ! body cavity [Term] id: UBERON:0001180 name: superior recess of lesser sac namespace: uberon alt_id: UBERON:FMA_14708-MA_0000447 comment: This class was created automatically from a combination of ontologies synonym: "omental bursa superior recess" EXACT [] synonym: "recessus superior bursae omentalis" EXACT [FMA:14708, FMA:TA] synonym: "recessus superior omentalis" EXACT [] synonym: "superior omental bursa" EXACT [] synonym: "superior recess of omental bursa" EXACT [] xref: EHDAA:2343 xref: FMA:14708 xref: MA:0000447 xref: SCTID:263190002 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0005252 ! omental bursa cavity relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0001181 name: inferior recess of lesser sac namespace: uberon alt_id: UBERON:FMA_14709-MA_0000446 comment: This class was created automatically from a combination of ontologies synonym: "inferior omental bursa" EXACT [] synonym: "inferior recess of omental bursa" EXACT [] synonym: "omental bursa inferior recess" EXACT [] synonym: "recessus inferior bursae omentalis" EXACT [FMA:14709, FMA:TA] synonym: "recessus inferior omentalis" EXACT [] xref: EHDAA:6083 xref: FMA:14709 xref: MA:0000446 xref: SCTID:263261002 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0005252 ! omental bursa cavity relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0001182 name: superior mesenteric artery namespace: uberon alt_id: UBERON:FMA_14749-MA_0002005 def: "In human anatomy, the superior mesenteric artery (SMA) arises from the anterior surface of the abdominal aorta, just inferior to the origin of the celiac trunk, and supplies the intestine from the lower part of the duodenum through two-thirds of the transverse colon, as well as the pancreas. [WP,unvetted]." [Wikipedia:Superior_mesenteric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria mesenterica superior" RELATED [BTO:0002303] synonym: "superior mesenteric arterial tree" EXACT [] xref: BTO:0002303 xref: EHDAA2:0001949 xref: EHDAA:3358 xref: EHDAA:5313 xref: EMAPA:18619 xref: FMA:14749 xref: GAID:502 xref: MA:0002005 xref: MESH:A.07.231.114.565.755 xref: OpenCyc:Mx4rwE5KipwpEbGdrcN5Y29ycA xref: SCTID:362048004 xref: VHOG:0000754 xref: galen:SuperiorMesentericArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray1099.png/200px-Gray1099.png xref: ncithesaurus:Superior_Mesenteric_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005616 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! mesenteric artery [Term] id: UBERON:0001183 name: inferior mesenteric artery namespace: uberon alt_id: UBERON:FMA_14750-MA_0002004 def: "In human anatomy, the inferior mesenteric artery, often abbreviated as IMA, supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria mesenterica inferior" RELATED [BTO:0002302] synonym: "inferior mesenteric arterial tree" EXACT [] xref: BTO:0002302 xref: EHDAA2:0000817 xref: EHDAA:4345 xref: EMAPA:18618 xref: FMA:14750 xref: GAID:501 xref: MA:0002004 xref: MESH:A.07.231.114.565.510 xref: OpenCyc:Mx4rv-t-S5wpEbGdrcN5Y29ycA xref: SCTID:181341006 xref: VHOG:0001116 xref: galen:InferiorMesentericArtery xref: ncithesaurus:Inferior_Mesenteric_Artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005616 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! mesenteric artery [Term] id: UBERON:0001184 name: renal artery namespace: uberon alt_id: UBERON:FMA_14751-MA_0002035-ZFA_0000420 def: "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 B1 0.74 mm using ultrasound, but 5.68 B1 1.19 mm using angiography. [WP,unvetted]." [Wikipedia:Renal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "renal arterial tree" EXACT [] synonym: "renal arteries" RELATED [] xref: AAO:0010223 xref: BTO:0001165 xref: EFO:0002552 xref: EHDAA2:0004100 xref: EHDAA:5321 xref: EHDAA:8594 xref: EMAPA:17862 xref: EMAPA:28373 xref: FMA:14751 xref: GAID:507 xref: MA:0002035 xref: MESH:A.07.231.114.745 xref: OpenCyc:Mx4rveOFHpwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001600 xref: SCTID:181339005 xref: TAO:0000420 xref: ZFA:0000420 xref: galen:RenalArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png xref: ncithesaurus:Renal_Artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0003644 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! kidney arterial blood vessel [Term] id: UBERON:0001185 name: right renal artery namespace: uberon alt_id: UBERON:FMA_14752-MA_0002037 def: "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 B1 0.74 mm using ultrasound, but 5.68 B1 1.19 mm using angiography. [WP,unvetted]." [Wikipedia:Right_renal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "right renal arterial tree" EXACT [] xref: FMA:14752 xref: MA:0002037 xref: OpenCyc:Mx4rtW8I0KgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA xref: SCTID:36800007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png xref: ncithesaurus:Right_Renal_Artery is_a: UBERON:0001184 ! renal artery [Term] id: UBERON:0001186 name: left renal artery namespace: uberon alt_id: UBERON:FMA_14753-MA_0002036 comment: This class was created automatically from a combination of ontologies synonym: "left renal arterial tree" EXACT [] xref: FMA:14753 xref: MA:0002036 xref: OpenCyc:Mx4rtW8I0agEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA xref: SCTID:19215005 xref: ncithesaurus:Left_Renal_Artery is_a: UBERON:0001184 ! renal artery [Term] id: UBERON:0001187 name: testicular artery namespace: uberon alt_id: UBERON:FMA_14758-MA_0002063 def: "The testicular artery (the male gonadal artery, also called the internal spermatic arteries in older texts) is a branch of the abdominal aorta that supplies blood to the testis. It is a paired artery, with one for each of the testes. It is the male equivalent of the ovarian artery. Because the testis is found in a different location than that of its female equivalent, it has a different course than the ovarian artery. They are two slender vessels of considerable length, and arise from the front of the aorta a little below the renal arteries. Each passes obliquely downward and lateralward behind the peritoneum, resting on the Psoas major, the right spermatic lying in front of the inferior vena cava and behind the middle colic and ileocolic arteries and the terminal part of the ileum, the left behind the left colic and sigmoid arteries and the iliac colon. Each crosses obliquely over the ureter and the lower part of the external iliac artery to reach the abdominal inguinal ring, through which it passes, and accompanies the other constituents of the spermatic cord along the inguinal canal to the scrotum, where it becomes tortuous, and divides into several branches. Two or three of these accompany the ductus deferens, and supply the epididymis, anastomosing with the artery of the ductus deferens; others pierce the back part of the tunica albuginea, and supply the substance of the testis. The internal spermatic artery supplies one or two small branches to the ureter, and in the inguinal canal gives one or two twigs to the Cremaster. [WP,unvetted]." [Wikipedia:Testicular_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "testicular arterial tree" EXACT [] xref: EMAPA:18621 xref: FMA:14758 xref: MA:0002063 xref: SCTID:244281003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0001188 name: right testicular artery namespace: uberon alt_id: UBERON:FMA_14759-MA_0002042 comment: This class was created automatically from a combination of ontologies synonym: "right spermatic artery" EXACT [] synonym: "trunk of right testicular arterial tree" EXACT [] xref: FMA:14759 xref: MA:0002042 xref: ncithesaurus:Right_Spermatic_Artery is_a: UBERON:0001187 ! testicular artery is_a: UBERON:0009659 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! spermatic artery [Term] id: UBERON:0001189 name: left testicular artery namespace: uberon alt_id: UBERON:FMA_14760-MA_0002041 comment: This class was created automatically from a combination of ontologies synonym: "left spermatic artery" EXACT [] synonym: "trunk of left testicular arterial tree" EXACT [] xref: FMA:14760 xref: MA:0002041 xref: ncithesaurus:Left_Spermatic_Artery is_a: UBERON:0001187 ! testicular artery is_a: UBERON:0009659 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! spermatic artery [Term] id: UBERON:0001190 name: ovarian artery namespace: uberon alt_id: UBERON:FMA_14761-MA_0002012 def: "In human anatomy, the ovarian artery is a blood vessel that supplies oxygenated blood to the ovary. It arises from the abdominal aorta below the renal artery, and does not pass out of the abdominal cavity. It can be found in the suspensory ligament of the ovary. [WP,unvetted]." [Wikipedia:Ovarian_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ovarian arterial tree" EXACT [] xref: EMAPA:18620 xref: FMA:14761 xref: MA:0002012 xref: OpenCyc:Mx4rwOa9PZwpEbGdrcN5Y29ycA xref: SCTID:244280002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png xref: ncithesaurus:Ovarian_Artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0010192 ! genital artery [Term] id: UBERON:0001191 name: common iliac artery namespace: uberon alt_id: UBERON:FMA_14764-MA_0001972 def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [Wikipedia:Common_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "common iliac arterial tree" EXACT [] xref: BTO:0004665 xref: EHDAA2:0000311 xref: EHDAA:2553 xref: EMAPA:17310 xref: FMA:14764 xref: MA:0001972 xref: OpenCyc:Mx4rvkZ7ZpwpEbGdrcN5Y29ycA xref: SCTID:362050007 xref: XAO:0000361 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Iliac_artery_bifurcation_and_aorta.PNG/200px-Iliac_artery_bifurcation_and_aorta.PNG xref: ncithesaurus:Common_Iliac_Artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005609 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! iliac artery relationship: develops_from UBERON:0005805 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dorsal aorta [Term] id: UBERON:0001192 name: left gastric artery namespace: uberon alt_id: UBERON:FMA_14768-MA_0001961 def: "In human anatomy, the left gastric artery arises from the celiac artery, and runs along the superior portion of the lesser curvature of the stomach. Branches also supply the lower esophagus. The left gastric artery anastomoses with the right gastric artery, which supplies the inferior portion. [WP,unvetted]." [Wikipedia:Left_gastric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gastric artery" EXACT [] xref: FMA:14768 xref: MA:0001961 xref: OpenCyc:Mx4rwMjqKZwpEbGdrcN5Y29ycA xref: SCTID:244267000 xref: galen:LeftGastricArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png xref: ncithesaurus:Gastric_Artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001640 ! celiac artery [Term] id: UBERON:0001193 name: hepatic artery namespace: uberon alt_id: UBERON:FMA_14769-MA_0001963 def: "." [Wikipedia:Hepatic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: BTO:0004307 xref: EMAPA:17859 xref: FMA:14769 xref: GAID:496 xref: MA:0001963 xref: MESH:A.07.231.114.407 xref: OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA xref: SCTID:76015000 xref: ZFA:0005161 xref: galen:HepaticArtery xref: ncithesaurus:Hepatic_Artery is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001194 name: splenic artery namespace: uberon alt_id: UBERON:FMA_14773-MA_0001991 def: "In anatomy, the splenic artery (in the past called the lienal artery) is the blood vessel that supplies oxygenated blood to the spleen. It branches from the celiac artery, and follows a course superior to the pancreas. [WP,unvetted]." [Wikipedia:Splenic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lienal artery" EXACT [] xref: EMAPA:19216 xref: FMA:14773 xref: GAID:510 xref: MA:0001991 xref: MESH:A.07.231.114.814 xref: OpenCyc:Mx4rv0cb2ZwpEbGdrcN5Y29ycA xref: SCTID:244266009 xref: galen:SplenicArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png xref: ncithesaurus:Splenic_Artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001640 ! celiac artery [Term] id: UBERON:0001195 name: inferior pancreaticoduodenal artery namespace: uberon alt_id: UBERON:FMA_14805-MA_0002014 def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [Wikipedia:Inferior_pancreaticoduodenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior pancreatico-duodenal artery" EXACT [] xref: FMA:14805 xref: MA:0002014 xref: SCTID:244273004 xref: ncithesaurus:Inferior_Pancreatico-duodenal_artery is_a: UBERON:0001637 ! artery is_a: UBERON:0009658 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pancreatico-duodenal artery [Term] id: UBERON:0001196 name: middle colic artery namespace: uberon alt_id: UBERON:FMA_14810-MA_0002007 def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingersb breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [Wikipedia:Middle_colic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:14810 xref: MA:0002007 xref: SCTID:244276007 xref: galen:MiddleColicArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Gray537.png/200px-Gray537.png xref: ncithesaurus:Middle_Colic_Artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001182 ! superior mesenteric artery [Term] id: UBERON:0001197 name: ileocolic artery namespace: uberon alt_id: UBERON:FMA_14815-MA_0001970 def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [Wikipedia:Ileocolic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:14815 xref: MA:0001970 xref: SCTID:244279000 xref: galen:IleocolicArtery xref: ncithesaurus:Ileo-colic_Artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001182 ! superior mesenteric artery [Term] id: UBERON:0001198 name: superior suprarenal artery namespace: uberon alt_id: UBERON:FMA_14863-MA_0002057 def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [Wikipedia:Superior_suprarenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "superior adrenal branch of inferior phrenic artery" EXACT [] synonym: "superior suprarenal branch of inferior phrenic artery" EXACT [] xref: FMA:14863 xref: MA:0002057 xref: SCTID:303424001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png xref: ncithesaurus:Superior_Suprarenal_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0005624 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! suprarenal artery [Term] id: UBERON:0001199 name: mucosa of stomach namespace: uberon alt_id: UBERON:FMA_14907-MA_0002683 def: "The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]." [Wikipedia:Gastric_mucosa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Magenschleimhaut" RELATED [BTO:0001308] synonym: "gastric mucosa" EXACT [] synonym: "gastric mucous membrane" EXACT [] synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic] synonym: "mucosa of ventriculus" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach" EXACT [] synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic] synonym: "stomach mucosa" EXACT [] synonym: "stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach mucous membrane" EXACT [OBOL:automatic] synonym: "stomach organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (gaster)" EXACT [] synonym: "tunica mucosa gastricae" EXACT [FMA:14907, FMA:TA] synonym: "tunica mucosa gastris" RELATED [BTO:0001308] synonym: "ventriculus mucosa" EXACT [OBOL:automatic] synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic] synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic] synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic] xref: BTO:0001308 xref: FMA:14907 xref: GAID:321 xref: MA:0002683 xref: MESH:A.03.492.766.440 xref: OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA xref: SCTID:362131005 xref: galen:GastricMucosa xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_stomach2.jpg/200px-Illu_stomach2.jpg xref: ncithesaurus:Gastric_Mucosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0004786 ! gastrointestinal system mucosa is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0001200 name: submucosa of stomach namespace: uberon alt_id: UBERON:FMA_14908-MA_0002685 def: "A submucosa that is part of a stomach [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "gastric submucosa" EXACT [] synonym: "stomach submucosa" EXACT [] synonym: "submucosa of ventriculus" EXACT [OBOL:automatic] synonym: "tela submucosa (gaster)" EXACT [] synonym: "ventriculus submucosa" EXACT [OBOL:automatic] xref: BTO:0002110 xref: FMA:14908 xref: MA:0002685 xref: SCTID:52459002 xref: ncithesaurus:Gastric_Submucosa is_a: UBERON:0000009 ! submucosa is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0001201 name: serosa of stomach namespace: uberon alt_id: UBERON:FMA_14914-MA_0001626 def: "A serous membrane that is part of a wall of stomach [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus serous membrane" EXACT [OBOL:automatic] synonym: "gastric serosa" RELATED [] synonym: "gastric wall serosa" EXACT [OBOL:automatic] synonym: "gastric wall serous membrane" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "serosa of gastric wall" EXACT [OBOL:automatic] synonym: "serosa of stomach anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of stomach wall" EXACT [OBOL:automatic] synonym: "serosa of ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of ventriculus wall" EXACT [OBOL:automatic] synonym: "serosa of wall of stomach" EXACT [OBOL:automatic] synonym: "serosa of wall of ventriculus" EXACT [OBOL:automatic] synonym: "serous coat of stomach" EXACT [] synonym: "serous membrane of anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "serous membrane of gastric wall" EXACT [OBOL:automatic] synonym: "serous membrane of stomach anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of stomach wall" EXACT [OBOL:automatic] synonym: "serous membrane of ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of ventriculus wall" EXACT [OBOL:automatic] synonym: "serous membrane of wall of stomach" EXACT [OBOL:automatic] synonym: "serous membrane of wall of ventriculus" EXACT [OBOL:automatic] synonym: "stomach anatomical wall serosa" EXACT [OBOL:automatic] synonym: "stomach anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "stomach serosa" EXACT [] synonym: "stomach wall serosa" EXACT [OBOL:automatic] synonym: "stomach wall serous membrane" EXACT [OBOL:automatic] synonym: "tunica serosa (gaster)" EXACT [] synonym: "tunica serosa gastricae" EXACT [FMA:14914, FMA:TA] synonym: "ventriculus anatomical wall serosa" EXACT [OBOL:automatic] synonym: "ventriculus anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "ventriculus wall serosa" EXACT [OBOL:automatic] synonym: "ventriculus wall serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of stomach" EXACT [] synonym: "wall of stomach serosa" EXACT [OBOL:automatic] synonym: "wall of stomach serous membrane" EXACT [OBOL:automatic] synonym: "wall of ventriculus serosa" EXACT [OBOL:automatic] synonym: "wall of ventriculus serous membrane" EXACT [OBOL:automatic] xref: FMA:14914 xref: MA:0001626 xref: SCTID:1353004 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0004782 ! gastrointestinal system serosa is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0001202 name: pyloric sphincter namespace: uberon alt_id: UBERON:FMA_14916-XAO_0000457 def: "A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]." [UBERON:cjm] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pyloric valve" EXACT [Wikipedia:Pylorus] xref: AAO:0011093 xref: EMAPA:19251 xref: FMA:14916 xref: MA:0002952 xref: OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA xref: SCTID:268073008 xref: VHOG:0001466 xref: XAO:0000457 xref: ncithesaurus:Pyloric_Sphincter is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004590 ! sphincter muscle [Term] id: UBERON:0001203 name: muscularis mucosae of stomach namespace: uberon alt_id: UBERON:FMA_14924-MA_0002684 comment: This class was created automatically from a combination of ontologies synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT [] synonym: "lamina muscularis of gastric mucosa" EXACT [] synonym: "muscular coat of stomach" EXACT [] synonym: "stomach muscularis mucosa" EXACT [] synonym: "tunica muscularis gastricae" EXACT [FMA:14924, FMA:TA] xref: FMA:14924 xref: MA:0002684 xref: SCTID:64551004 is_a: UBERON:0004222 ! stomach smooth muscle is_a: UBERON:0006676 ! muscularis mucosa [Term] id: UBERON:0001204 name: mucosa of small intestine namespace: uberon alt_id: UBERON:FMA_14933-MA_0002686 def: "A mucosa that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic] synonym: "mucosa of small bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of small intestine" EXACT [] synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic] synonym: "small bowel mucosa" EXACT [OBOL:automatic] synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "small bowel mucous membrane" EXACT [OBOL:automatic] synonym: "small bowel organ mucosa" EXACT [OBOL:automatic] synonym: "small intestinal mucosa" EXACT [] synonym: "small intestine mucosa" EXACT [] synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "small intestine mucous membrane" EXACT [] synonym: "small intestine organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (intestinum tenue)" EXACT [] synonym: "tunica mucosa intestini tenuis" EXACT [FMA:14933, FMA:TA] xref: BTO:0001259 xref: FMA:14933 xref: MA:0002686 xref: SCTID:362144000 xref: ncithesaurus:Small_Intestinal_Mucosa is_a: UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0001168 ! wall of small intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001205 name: submucosa of small intestine namespace: uberon alt_id: UBERON:FMA_14934-MA_0001562 def: "." [Wikipedia:Small_intestinal_submucosa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "small bowel submucosa" EXACT [OBOL:automatic] synonym: "small intestinal submucosa" EXACT [] synonym: "small intestine submucosa" EXACT [] synonym: "submucosa of small bowel" EXACT [OBOL:automatic] synonym: "tela submucosa (intestinum tenue)" EXACT [] xref: FMA:14934 xref: MA:0001562 xref: SCTID:691000 xref: ncithesaurus:Small_Intestinal_Submucosa is_a: UBERON:0000009 ! submucosa is_a: UBERON:0009566 ! intestinal submucosa relationship: part_of UBERON:0001168 ! wall of small intestine [Term] id: UBERON:0001206 name: serosa of small intestine namespace: uberon alt_id: UBERON:FMA_14938-MA_0001558 def: "A serous membrane that is part of a small intestine [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "serosa of small bowel" EXACT [OBOL:automatic] synonym: "serous coat of small intestine" EXACT [] synonym: "serous membrane of small bowel" EXACT [OBOL:automatic] synonym: "serous membrane of small intestine" EXACT [OBOL:automatic] synonym: "small bowel serosa" EXACT [OBOL:automatic] synonym: "small bowel serous membrane" EXACT [OBOL:automatic] synonym: "small intestinal serosa" EXACT [] synonym: "small intestine serosa" EXACT [] synonym: "small intestine serous membrane" EXACT [OBOL:automatic] synonym: "tunica serosa (intestinum tenue)" EXACT [] synonym: "tunica serosa intestini tenuis" EXACT [FMA:14938, FMA:TA] synonym: "visceral peritoneum of small intestine" EXACT [] xref: FMA:14938 xref: MA:0001558 xref: SCTID:8266009 is_a: UBERON:0001243 ! serosa of intestine relationship: part_of UBERON:0001168 ! wall of small intestine relationship: part_of UBERON:0001243 ! serosa of intestine [Term] id: UBERON:0001207 name: mucosa of large intestine namespace: uberon alt_id: UBERON:FMA_14969-MA_0002688 def: "A mucosa that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "large intestinal mucosa" EXACT [] synonym: "large intestine mucosa" EXACT [] synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "large intestine mucous membrane" EXACT [OBOL:automatic] synonym: "large intestine organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic] synonym: "mucous membrane of large intestine" EXACT [] synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic] synonym: "tunica mucosa intestini crassi" EXACT [FMA:14969, FMA:TA] xref: FMA:14969 xref: MA:0002688 xref: ncithesaurus:Large_Intestinal_Mucosa is_a: UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001208 name: submucosa of large intestine namespace: uberon alt_id: UBERON:FMA_14970-MA_0002690 def: "A submucosa that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "large intestinal submucosa" EXACT [] synonym: "large intestine submucosa" EXACT [] xref: BTO:0002111 xref: FMA:14970 xref: MA:0002690 xref: ncithesaurus:Large_Intestinal_Submucosa is_a: UBERON:0000009 ! submucosa is_a: UBERON:0009566 ! intestinal submucosa relationship: part_of UBERON:0001169 ! wall of large intestine [Term] id: UBERON:0001209 name: serosa of large intestine namespace: uberon alt_id: UBERON:FMA_14975-MA_0001546 def: "A serous membrane that is part of a large intestine [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "large intestinal serosa" EXACT [] synonym: "large intestine serosa" EXACT [] synonym: "large intestine serous membrane" EXACT [OBOL:automatic] synonym: "serous coat of large intestine" EXACT [] synonym: "serous membrane of large intestine" EXACT [OBOL:automatic] synonym: "tunica serosa intestini crassi" EXACT [FMA:14975, FMA:TA] synonym: "visceral peritoneum of large intestine" EXACT [] xref: FMA:14975 xref: MA:0001546 is_a: UBERON:0001243 ! serosa of intestine relationship: part_of UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001243 ! serosa of intestine [Term] id: UBERON:0001210 name: muscularis mucosae of small intestine namespace: uberon alt_id: UBERON:FMA_15051-MA_0002687 comment: This class was created automatically from a combination of ontologies synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT [] synonym: "lamina muscularis of small intestine mucous membrane" EXACT [] synonym: "small intestine muscularis mucosa" EXACT [] xref: FMA:15051 xref: MA:0002687 xref: SCTID:36401004 xref: ncithesaurus:Small_Intestinal_Muscularis_Mucosa is_a: UBERON:0001240 ! muscularis mucosae of intestine is_a: UBERON:0004239 ! small intestine smooth muscle relationship: part_of UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine [Term] id: UBERON:0001211 name: Peyer's patch namespace: uberon alt_id: UBERON:FMA_15054-MA_0000137 def: "aggregations of lymphoid tissue that are usually found in the lowest portion of the small intestine ileum in humans; as such, they differentiate the ileum from the duodenum and jejunum // nodular lymphoid structures on the serosal surface of the small intestine." [Wikipedia:Peyer's_patch] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "aggregated lymphoid nodules of small intestine" EXACT [FMA:76466] synonym: "noduli lymphoidei aggregati intestini tenuis" EXACT [FMA:76466, FMA:TA] synonym: "peyer's patches" EXACT [FMA:76466] xref: BTO:0001784 xref: EFO:0001381 xref: EMAPA:19028 xref: FMA:76466 xref: GAID:950 xref: MA:0000137 xref: MESH:A.10.549.598 is_a: UBERON:0001962 ! gut-associated lymphoid tissue relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001212 name: duodenal gland namespace: uberon alt_id: UBERON:FMA_15060-MA_0001551 def: "compound tubular submucosal glands found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]." [Wikipedia:Brunner's_glands] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Brunner's gland" EXACT [FMA:15060] synonym: "gland of Brunner" EXACT [FMA:15060] synonym: "glandula duodenales" RELATED [BTO:0002376] synonym: "glandula duodenales Brunneri" RELATED [BTO:0002376] xref: BTO:0002376 xref: FMA:15060 xref: GAID:314 xref: MA:0001551 xref: MESH:A.03.492.411.620.270.322 xref: SCTID:41298001 xref: ncithesaurus:Brunner_s_Gland is_a: UBERON:0000333 ! intestinal gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001213 name: intestinal villus namespace: uberon alt_id: UBERON:FMA_15072-ZFA_0005125 def: "iny, finger-like projections that protrude from the epithelial lining of the intestinal wall[WP]" [Wikipedia:Intestinal_villus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "intestinal villi" EXACT PLURAL [] synonym: "villi intestinales" EXACT PLURAL [] synonym: "villus" EXACT [BTO:0003121] synonym: "villus intestinalis (intestinum tenue)" EXACT [FMA:15072] xref: BTO:0003121 xref: FMA:15072 xref: SCTID:23230007 xref: TAO:0005125 xref: ZFA:0005125 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg xref: ncithesaurus:Villus is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0001277 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! intestinal epithelium [Term] id: UBERON:0001214 name: pancreatic tributary of splenic vein namespace: uberon alt_id: UBERON:FMA_15388-MA_0002189 def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [Wikipedia:Pancreatic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pancreatic vein" EXACT [] xref: FMA:15388 xref: MA:0002189 xref: SCTID:264492008 xref: ncithesaurus:Pancreatic_Vein is_a: UBERON:0002017 ! portal vein [Term] id: UBERON:0001215 name: inferior mesenteric vein namespace: uberon alt_id: UBERON:FMA_15391-MA_0002178 def: "In human anatomy, the inferior mesenteric vein (IMV) is a blood vessel that drains blood from the large intestine. It usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lower mesenteric vein" RELATED [BTO:0002782] xref: BTO:0002782 xref: EHDAA2:0000819 xref: EHDAA:8712 xref: EMAPA:18642 xref: FMA:15391 xref: MA:0002178 xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA xref: SCTID:281055007 xref: VHOG:0001118 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: ncithesaurus:Inferior_Mesenteric_Vein is_a: UBERON:0005617 ! mesenteric vein [Term] id: UBERON:0001216 name: jejunal vein namespace: uberon alt_id: UBERON:FMA_15402-MA_0002153 def: "The jejunal veins are tributaries of the superior mesenteric vein. [WP,unvetted]." [Wikipedia:Jejunal_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:15402 xref: MA:0002153 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001217 name: ileal vein namespace: uberon alt_id: UBERON:FMA_15405-MA_0002140 comment: This class was created automatically from a combination of ontologies xref: FMA:15405 xref: MA:0002140 xref: ncithesaurus:Ileal_Vein is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001218 name: middle colic vein namespace: uberon alt_id: UBERON:FMA_15406-MA_0002181 def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [Wikipedia:Middle_colic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "vena colica media (intermedia)" EXACT [] xref: FMA:15406 xref: MA:0002181 xref: OpenCyc:Mx4rvywYIpwpEbGdrcN5Y29ycA xref: SCTID:9018004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001219 name: ileocolic vein namespace: uberon alt_id: UBERON:FMA_15408-MA_0002141 def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [Wikipedia:Ileocolic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:15408 xref: MA:0002141 xref: SCTID:36208008 xref: ncithesaurus:Ileocolic_Vein is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001220 name: quadratus lumborum namespace: uberon alt_id: UBERON:FMA_15569-MA_0002362 def: "The Quadratus lumborum is irregular and quadrilateral in shape, and broader below than above. [WP,unvetted]." [Wikipedia:Quadratus_lumborum] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "muscle of posterior abdominal wall" EXACT [] xref: EMAPA:18524 xref: FMA:15569 xref: MA:0002362 xref: OpenCyc:Mx4rvj1wcpwpEbGdrcN5Y29ycA xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray1124.png/200px-Gray1124.png xref: ncithesaurus:Quadratus_Lumborum is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0001221 name: transversus abdominis namespace: uberon alt_id: UBERON:FMA_15570-MA_0002396 def: "The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]." [Wikipedia:Transversus_abdominis] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus transversus abdominis" EXACT [FMA:15570, FMA:TA] synonym: "transverse abdominal" EXACT [] xref: EHDAA2:0002078 xref: EHDAA:8254 xref: EMAPA:18165 xref: FMA:15570 xref: MA:0002396 xref: VHOG:0000845 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_trunk_muscles.jpg/200px-Illu_trunk_muscles.jpg xref: ncithesaurus:Transversus_Abdominis is_a: UBERON:0002461 ! anterior abdominal wall muscle [Term] id: UBERON:0001222 name: right ureter namespace: uberon alt_id: UBERON:FMA_15571-MA_0001685 def: "A ureter that is part of a right side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies xref: FMA:15571 xref: MA:0001685 xref: SCTID:276251000 xref: ncithesaurus:Right_Ureter is_a: UBERON:0000056 ! ureter [Term] id: UBERON:0001223 name: left ureter namespace: uberon alt_id: UBERON:FMA_15572-MA_0001684 def: "A ureter that is part of a left side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies xref: FMA:15572 xref: MA:0001684 xref: SCTID:276340002 xref: ncithesaurus:Left_Ureter is_a: UBERON:0000056 ! ureter [Term] id: UBERON:0001224 name: renal pelvis namespace: uberon alt_id: UBERON:FMA_15575-MA_0000374 def: "funnel-like dilated proximal part of the ureter in the kidney." [Wikipedia:Renal_pelvis] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "kidney pelvis" EXACT [] synonym: "pelvis of ureter" EXACT [] xref: EMAPA:17948 xref: FMA:15575 xref: GAID:426 xref: MA:0000374 xref: MESH:A.05.810.453.537 xref: SCTID:362221007 xref: galen:RenalPelvis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg xref: ncithesaurus:Renal_Pelvis is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0002113 ! kidney disjoint_from: UBERON:0002355 ! pelvis [Term] id: UBERON:0001225 name: cortex of kidney namespace: uberon alt_id: UBERON:FMA_15581-MA_0000372 def: "Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Kidney_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cortex renalis" EXACT [FMA:15581, FMA:TA] synonym: "kidney cortex" EXACT [] synonym: "renal cortex" EXACT [] xref: BTO:0001166 xref: EMAPA:17952 xref: FMA:15581 xref: GAID:424 xref: MA:0000372 xref: MESH:A.05.810.453.324 xref: SCTID:362211004 xref: galen:CortexOfKidney xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg xref: ncithesaurus:Renal_Cortex is_a: UBERON:0001851 ! cortex is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0008987 ! renal parenchyma [Term] id: UBERON:0001226 name: major calyx namespace: uberon alt_id: UBERON:FMA_15613-MA_0001644 def: "The major calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into a minor calyx then into major calyx before passing through the renal pelvis into the ureter. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Major_calyx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "major calix" EXACT [] xref: EMAPA:18677 xref: FMA:15613 xref: MA:0001644 xref: SCTID:1106008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png is_a: UBERON:0006517 ! kidney calyx [Term] id: UBERON:0001227 name: minor calyx namespace: uberon alt_id: UBERON:FMA_15614-MA_0001645 def: "The minor calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into the minor calyx then into the major calyx. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Minor_calyx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "minor calix" EXACT [] xref: EMAPA:18678 xref: FMA:15614 xref: MA:0001645 xref: SCTID:26293004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png is_a: UBERON:0006517 ! kidney calyx [Term] id: UBERON:0001228 name: renal papilla namespace: uberon alt_id: UBERON:FMA_15622-MA_0002730 def: "In the kidney, the renal papilla is the location where the Medullary pyramids empty urine into the renal pelvis. Histologically it is marked by medullary collecting ducts converging to channel the fluid. Transitional epithelium begins to be seen. [WP,unvetted]." [Wikipedia:Renal_papilla] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "kidney papilla" EXACT [MP:0011303] xref: BTO:0003925 xref: FMA:15622 xref: MA:0002730 xref: MESH:A.05.810.453.466 xref: SCTID:362214007 xref: galen:RenalPapilla xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png xref: ncithesaurus:Renal_Papilla is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0001229 name: renal corpuscle namespace: uberon alt_id: UBERON:FMA_15625-MA_0000376 def: "In the kidney, a renal corpuscle is the initial blood-filtering component of a nephron. It consists of two structures: a glomerulus and a Bowman's capsule. The glomerulus is a small tuft of capillaries containing two cell types. Endothelial cells, which have large fenestrae, are not covered by diaphragms. Mesangial cells are modified smooth muscle cells that lie between the capillaries and the glomerulus. They regulate blood flow by their contractile activity and secrete extracellular matrix, prostaglandins, and cytokines. Mesangial cells also have phagocytic activity, removing proteins and other molecules trapped in the glomerular basement membrane or filtration barrier. The Bowman's capsule has an outer parietal layer composed of simple squamous epithelium. The visceral layer, composed of modified simple squamous epithelium, is lined by podocytes. Podocytes have foot processes, pedicels, that wrap around glomerular capillaries. These pedicels interdigitate with pedicels of adjacent podocytes forming filtration slits. The renal corpuscle filtration barrier is composed of: the fenestrated endothelium of glomerular capillaries, the fused basal lamina of endothelial cells and podocytes, and the filtration slits of the podocytes. This barrier permits passage of water, ions, and small molecules from the bloodstream into Bowman's space (the space between the visceral and parietal layers). Large and/or negatively charged proteins are prevented from passing into Bowman's space, thus retaining these proteins in the circulation. The basal lamina is composed of 3 layers: lamina rara externa, lamina densa, and lamina rara interna. The lamina rara externa is adjacent to the podocyte processes. The lamina densa is the central layer consisting of type IV collagen and laminin. This layer acts as a selective macromolecular filter, preventing the passage of large protein molecules into Bowman's space. The lamina rara intena is adjacent to endothelial cells. This layer contains heparan sulfate, a negatively charged glycosaminoglycan that contributes to the electrostatic barrier of the glomerular filter. There are two poles in the renal corpuscle, a vascular pole, and a urinary pole. The vascular pole is where the afferent and efferent arterioles communicate with the glomerulus. The urinary pole is where the corpuscle opens into the lumen of the proximal convoluted tubule. Fluid from blood in the glomerulus is collected in the Bowman's capsule to form 'glomerular filtrate', which is then further processed along the nephron to form urine. [WP,unvetted]." [Wikipedia:Renal_corpuscle] comment: Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Malpighian corpuscle" EXACT [ZFA:0005281] synonym: "corpusculum renale" EXACT [] synonym: "cortical renal corpuscle" RELATED [] synonym: "malphighian corpuscle" RELATED [] synonym: "malphigian corpuscle" EXACT [] xref: BTO:0000333 xref: EV:0100385 xref: FMA:15625 xref: MA:0000376 xref: SCTID:361329009 xref: VHOG:0001262 xref: ZFA:0005281 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Renal_corpuscle.svg/200px-Renal_corpuscle.svg.png xref: ncithesaurus:Renal_Corpuscle is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0001230 name: glomerular capsule namespace: uberon alt_id: UBERON:FMA_15626-MA_0001660 def: "The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]." [Wikipedia:Glomerular_capsule] comment: One fold of the S-shaped body gives rise to Bowmanbs capsule[GUDMAP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "Bowmans capsule" EXACT [KUPO:0001001] xref: AAO:0010526 xref: BTO:0002297 xref: EMAPA:27973 xref: EMAPA:28257 xref: FMA:15626 xref: KUPO:0001001 xref: MA:0001660 xref: SCTID:361331000 xref: ZFA:0005254 xref: ZFA:0005310 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png xref: ncithesaurus:Bowman_s_Capsule is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001229 ! renal corpuscle relationship: part_of UBERON:0002120 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pronephros disjoint_from: UBERON:0002015 ! kidney capsule [Term] id: UBERON:0001231 name: nephron tubule namespace: uberon alt_id: UBERON:0004210 alt_id: UBERON:FMA_15627-ZFA_0001287 def: "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] comment: note that in ISBN10:0073040584 \"Vertebrates, Kardong\", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "kidney tubule" EXACT [GAID:433] synonym: "renal tubule" BROAD [] synonym: "tubulus renalis" EXACT [] synonym: "uriniferous tubule" RELATED [MA:0000377] xref: BTO:0000343 xref: EFO:0003666 xref: EMAPA:27782 xref: EV:0100387 xref: FMA:15627 xref: GAID:433 xref: MA:0000377 xref: MESH:A.05.810.453.736.560 xref: SCTID:361332007 xref: TAO:0001287 xref: ZFA:0001287 xref: ncithesaurus:Renal_Tubule is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0009773 ! renal tubule is_a: UBERON:0006553 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! renal duct [Term] id: UBERON:0001232 name: collecting duct of renal tubule namespace: uberon alt_id: UBERON:FMA_15628-MA_0000371 def: "The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient" [GO:0072044] comment: note that in ISBN10:0073040584 \"Vertebrates, Kardong\", the nephron is adjacent to the collecting tubule, consistent with FMA, but not GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "collecting duct" EXACT [GO:0072044] synonym: "collecting duct system" RELATED [BTO:0000761] synonym: "collecting tubule" RELATED [] synonym: "kidney collecting duct" EXACT [] synonym: "renal collecting tubule" EXACT [FMA:15628] synonym: "tubulus renalis colligens" EXACT [] xref: BTO:0000761 xref: EMAPA:28407 xref: EV:0100391 xref: FMA:15628 xref: GAID:434 xref: MA:0000371 xref: MESH:A.05.810.453.736.560.510 xref: SCTID:28202009 xref: ZFA:0005294 is_a: UBERON:0000058 ! duct is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0001285 ! nephron relationship: part_of UBERON:0007684 ! uriniferous tubule [Term] id: UBERON:0001233 name: right adrenal gland namespace: uberon alt_id: UBERON:FMA_15629-MA_0000719 comment: This class was created automatically from a combination of ontologies synonym: "right suprarenal gland" EXACT [] xref: FMA:15629 xref: MA:0000719 xref: SCTID:281625001 xref: ncithesaurus:Right_Adrenal_Gland is_a: UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001234 name: left adrenal gland namespace: uberon alt_id: UBERON:FMA_15630-MA_0000718 comment: This class was created automatically from a combination of ontologies synonym: "left suprarenal gland" EXACT [] xref: FMA:15630 xref: MA:0000718 xref: SCTID:281626000 xref: ncithesaurus:Left_Adrenal_Gland is_a: UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001235 name: adrenal cortex namespace: uberon alt_id: UBERON:FMA_15632-MA_0000118-XAO_0000165 def: "Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex] comment: Taxon notes: Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adrenal gland cortex" EXACT [] synonym: "cortex (glandula suprarenalis)" EXACT [] synonym: "cortex glandulae suprarenalis" RELATED [BTO:0000045] synonym: "cortex of adrenal gland" EXACT [] synonym: "cortex of suprarenal gland" EXACT [] synonym: "suprarenal" RELATED [] synonym: "suprarenal cortex" EXACT [] xref: AAO:0011009 xref: BTO:0000045 xref: EFO:0000237 xref: EMAPA:18427 xref: EV:0100136 xref: FMA:15632 xref: GAID:447 xref: MA:0000118 xref: MAT:0000494 xref: MESH:A.06.407.071.140 xref: SCTID:362584002 xref: VHOG:0001481 xref: XAO:0000165 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png xref: ncithesaurus:Adrenal_Cortex is_a: UBERON:0001851 ! cortex is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001236 name: adrenal medulla namespace: uberon alt_id: UBERON:FMA_15633-MA_0000119-XAO_0000166 def: "The adrenal medulla is part of the adrenal gland. It is located at the center of the gland, being surrounded by the adrenal cortex. It is the innermost part of the adrenal gland, consisting of cells that secrete epinephrine, norepinephrine, and a small amount of dopamine in response to stimulation by sympathetic preganglionic neurons. Composed mainly of hormone-producing chromaffin cells, the adrenal medulla is the principal site of the conversion of the amino acid tyrosine into the catecholamines adrenaline (epinephrine), noradrenaline (norepinephrine), and dopamine[WP,unvetted]." [Wikipedia:Adrenal_medulla] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adrenal gland medulla" EXACT [] synonym: "chromaffin cells" RELATED [] synonym: "medulla (glandula suprarenalis)" EXACT [] synonym: "medulla glandulae suprarenalis" EXACT [FMA:15633, FMA:TA] synonym: "medulla of adrenal gland" EXACT [OBOL:automatic] synonym: "medulla of glandula suprarenalis" RELATED [BTO:0000049] synonym: "medulla of suprarenal gland" EXACT [] synonym: "suprarenal medulla" EXACT [] xref: AAO:0011010 xref: BTO:0000049 xref: EFO:0000852 xref: EMAPA:18428 xref: EV:0100137 xref: FMA:15633 xref: GAID:451 xref: MA:0000119 xref: MAT:0000495 xref: MESH:A.06.224.161 xref: SCTID:362585001 xref: VHOG:0001378 xref: XAO:0000166 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png xref: ncithesaurus:Adrenal_Medulla is_a: UBERON:0000958 ! medulla is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003083 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! trunk neural crest [Term] id: UBERON:0001237 name: paraaortic body namespace: uberon alt_id: UBERON:FMA_15647-MA_0001137 def: "." [Wikipedia:Organ_of_Zuckerkandl] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "organ of zuckerkandl" EXACT [] synonym: "para-aortic body" RELATED [] synonym: "paraganglia of zuckerkandl" RELATED [] synonym: "paraganglion of Zuckerkandl" EXACT [EMAPA:18223] xref: EMAPA:18223 xref: FMA:15647 xref: GAID:444 xref: MA:0001137 xref: MESH:A.06.224.636 xref: SCTID:276159005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001238 name: lamina propria of small intestine namespace: uberon alt_id: UBERON:FMA_15651-MA_0001554 def: "Lamina propria that is part_of the small intestine." [GOC:Obol] synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of small intestine" EXACT [] synonym: "lamina propria of mucosa of small intestine" EXACT [] synonym: "lamina propria of small bowel" EXACT [OBOL:automatic] synonym: "small bowel lamina propria" EXACT [OBOL:automatic] synonym: "small bowel lamina propria mucosa" EXACT [OBOL:automatic] synonym: "small bowel lamina propria mucosae" EXACT [OBOL:automatic] synonym: "small intestine lamina propria" EXACT [] synonym: "small intestine lamina propria mucosa" EXACT [OBOL:automatic] synonym: "small intestine lamina propria mucosae" EXACT [OBOL:automatic] xref: FMA:15651 xref: MA:0001554 xref: SCTID:63588008 xref: ncithesaurus:Small_Intestinal_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004780 ! gastrointestinal system lamina propria relationship: part_of UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0001239 name: muscularis mucosae of large intestine namespace: uberon alt_id: UBERON:FMA_15655-MA_0002689 comment: This class was created automatically from a combination of ontologies synonym: "lamina muscularis of large intestine mucosa" EXACT [] synonym: "lamina muscularis of large intestine mucous membrane" EXACT [] synonym: "large intestine muscularis mucosa" EXACT [] xref: FMA:15655 xref: MA:0002689 xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa is_a: UBERON:0001240 ! muscularis mucosae of intestine is_a: UBERON:0004220 ! large intestine smooth muscle relationship: part_of UBERON:0001207 ! mucosa of large intestine relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine [Term] id: UBERON:0001240 name: muscularis mucosae of intestine namespace: uberon alt_id: UBERON:FMA_15691-MA_0002694 comment: This class was created automatically from a combination of ontologies synonym: "intestine muscularis mucosa" EXACT [] xref: FMA:15691 xref: MA:0002694 is_a: UBERON:0004221 ! intestine smooth muscle is_a: UBERON:0006676 ! muscularis mucosa relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001241 name: crypt of Lieberkuhn of small intestine namespace: uberon alt_id: UBERON:FMA_15693-MA_0001552 def: "A crypt of lieberkuhn that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "crypt of lieberkuhn of small bowel" EXACT [OBOL:automatic] synonym: "crypt of lieberkuhn of small intestine" EXACT [OBOL:automatic] synonym: "intestinal gland of small bowel" EXACT [OBOL:automatic] synonym: "intestinal gland of small intestine" EXACT [OBOL:automatic] synonym: "lieberkuhn crypt of small bowel" EXACT [OBOL:automatic] synonym: "lieberkuhn crypt of small intestine" EXACT [OBOL:automatic] synonym: "small bowel crypt of lieberkuhn" EXACT [OBOL:automatic] synonym: "small bowel intestinal gland" EXACT [OBOL:automatic] synonym: "small bowel lieberkuhn crypt" EXACT [OBOL:automatic] synonym: "small intestinal crypt of Lieberkuhn" EXACT [] synonym: "small intestine crypt of Lieberkuhn" EXACT [] synonym: "small intestine crypt of lieberkuhn" EXACT [OBOL:automatic] synonym: "small intestine intestinal gland" EXACT [OBOL:automatic] synonym: "small intestine lieberkuhn crypt" EXACT [OBOL:automatic] xref: FMA:15693 xref: MA:0001552 xref: ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn is_a: UBERON:0001983 ! crypt of lieberkuhn relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001242 name: intestinal mucosa namespace: uberon alt_id: UBERON:FMA_15695-MA_0001537 def: "The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bowel mucosa" EXACT [OBOL:automatic] synonym: "bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "bowel mucous membrane" EXACT [OBOL:automatic] synonym: "bowel organ mucosa" EXACT [OBOL:automatic] synonym: "intestine mucosa" EXACT [] synonym: "intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "intestine mucous membrane" EXACT [OBOL:automatic] synonym: "intestine organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bowel" EXACT [OBOL:automatic] synonym: "mucosa of intestine" EXACT [] synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic] synonym: "mucous membrane of bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of intestine" EXACT [OBOL:automatic] synonym: "organ mucosa of bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of intestine" EXACT [OBOL:automatic] xref: BTO:0000642 xref: FMA:15695 xref: GAID:296 xref: MA:0001537 xref: MESH:A.03.492.411.369 xref: SCTID:362080002 xref: ncithesaurus:Intestinal_Mucosa is_a: UBERON:0004786 ! gastrointestinal system mucosa relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001243 name: serosa of intestine namespace: uberon alt_id: UBERON:FMA_15701-MA_0001538 def: "A serous membrane that is part of a wall of intestine [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine serous membrane" EXACT [OBOL:automatic] synonym: "bowel anatomical wall serosa" EXACT [OBOL:automatic] synonym: "bowel anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "bowel wall serosa" EXACT [OBOL:automatic] synonym: "bowel wall serous membrane" EXACT [OBOL:automatic] synonym: "intestinal serosa" EXACT [] synonym: "intestinal wall serosa" EXACT [OBOL:automatic] synonym: "intestinal wall serous membrane" EXACT [OBOL:automatic] synonym: "intestine anatomical wall serosa" EXACT [OBOL:automatic] synonym: "intestine anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "intestine serosa" EXACT [] synonym: "intestine wall serosa" EXACT [OBOL:automatic] synonym: "intestine wall serous membrane" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "serosa of bowel anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of bowel wall" EXACT [OBOL:automatic] synonym: "serosa of intestinal wall" EXACT [OBOL:automatic] synonym: "serosa of intestine anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of intestine wall" EXACT [OBOL:automatic] synonym: "serosa of wall of bowel" EXACT [OBOL:automatic] synonym: "serosa of wall of intestine" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "serous membrane of bowel anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of bowel wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestinal wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestine anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestine wall" EXACT [OBOL:automatic] synonym: "serous membrane of wall of bowel" EXACT [OBOL:automatic] synonym: "serous membrane of wall of intestine" EXACT [OBOL:automatic] synonym: "visceral peritoneum of intestine" EXACT [] synonym: "wall of bowel serosa" EXACT [OBOL:automatic] synonym: "wall of bowel serous membrane" EXACT [OBOL:automatic] synonym: "wall of intestine serosa" EXACT [OBOL:automatic] synonym: "wall of intestine serous membrane" EXACT [OBOL:automatic] xref: FMA:15701 xref: MA:0001538 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004782 ! gastrointestinal system serosa relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001244 name: internal anal sphincter namespace: uberon alt_id: UBERON:FMA_15710-MA_0001534 def: "The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]." [Wikipedia:Internal_anal_sphincter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "circular layer of anal muscularis externa" EXACT [] synonym: "circular layer of muscularis externa of anal canal" EXACT [] synonym: "circular layer of muscularis propria of anal canal" EXACT [] synonym: "circular muscle layer of anal canal" EXACT [] xref: EMAPA:18266 xref: FMA:15710 xref: MA:0001534 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray1079.png/200px-Gray1079.png xref: ncithesaurus:Internal_Anal_Sphincter is_a: UBERON:0004231 ! anal region smooth muscle is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0004916 ! anal sphincter is_a: UBERON:0007521 ! smooth muscle sphincter relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0001245 name: anus namespace: uberon alt_id: UBERON:FMA_15711-MA_0000331-ZFA_0000066 def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator] comment: Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anal orifice" EXACT [] synonym: "proctodeum" RELATED [] xref: BTO:0001680 xref: EV:0100082 xref: FBbt:00001893 xref: FBbt:00003148 xref: FMA:15711 xref: GAID:312 xref: MA:0000331 xref: MESH:A.03.492.411.495.767.288 xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA xref: SCTID:181262009 xref: TADS:0000066 xref: TGMA:0001279 xref: WBbt:0005364 xref: galen:Anus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif xref: ncithesaurus:Anus is_a: UBERON:0000161 ! orifice is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004921 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! subdivision of digestive tract relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0001353 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! anal region relationship: part_of UBERON:0002548 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! larva relationship: part_of UBERON:0003143 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! pupa [Term] id: UBERON:0001246 name: interlobular bile duct namespace: uberon alt_id: UBERON:FMA_15767-MA_0002668 def: "the canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500] comment: This class was created automatically from a combination of ontologies xref: FMA:15767 xref: MA:0002668 xref: SCTID:83488001 xref: ncithesaurus:Interlobular_Bile_Duct is_a: UBERON:0003704 ! intrahepatic bile duct relationship: part_of UBERON:0001279 ! portal triad [Term] id: UBERON:0001247 name: falciform ligament namespace: uberon alt_id: UBERON:FMA_15823-MA_0001622 def: "a ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [Wikipedia:Falciform_ligament] comment: In FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "falciform ligament of liver" EXACT [] synonym: "ligamentum falciforme (hepatis)" EXACT [] synonym: "ligamentum falciforme hepatis" EXACT [FMA:15823, FMA:TA] xref: EHDAA2:0000499 xref: EHDAA:4856 xref: EMAPA:18288 xref: EMAPA:18908 xref: FMA:15823 xref: MA:0001622 xref: SCTID:362705001 xref: VHOG:0000355 xref: ncithesaurus:Falciform_Ligament is_a: UBERON:0002095 ! mesentery is_a: UBERON:0003281 ! mesentery of stomach is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0008845 ! nonskeletal ligament relationship: part_of UBERON:0005626 ! ventral mesogastrium [Term] id: UBERON:0001248 name: hilum of spleen namespace: uberon alt_id: UBERON:FMA_15841-MA_0002670 def: "The Splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [Wikipedia:Splenic_hilum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hilum lienale" EXACT [FMA:15841, FMA:TA] synonym: "hilum splenicum" EXACT [FMA:15841, FMA:TA] synonym: "spleen hilum" EXACT [] synonym: "splenic hilum" EXACT [] xref: EMAPA:19303 xref: FMA:15841 xref: MA:0002670 xref: SCTID:245377005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png xref: ncithesaurus:Splenic_Hilum is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004885 ! hilum [Term] id: UBERON:0001249 name: lymphoid nodule of spleen namespace: uberon alt_id: UBERON:FMA_15843-MA_0002672 def: "A lymphoid nodule that is part_of a spleen" [GOC:Obol] synonym: "lymphatic follicle of spleen" EXACT [] synonym: "lymphoid follicle of spleen" EXACT [] synonym: "lymphoid nodule of spleen" EXACT [OBOL:automatic] synonym: "malpighian body" EXACT [] synonym: "spleen Lymphoid nodule" EXACT [OBOL:automatic] synonym: "spleen lymphoid follicle" EXACT [] synonym: "spleen lymphoid nodule" RELATED [] synonym: "splenic Lymphoid nodule" EXACT [OBOL:automatic] synonym: "splenic lymphatic follicle" EXACT [] xref: FMA:15843 xref: MA:0002672 xref: SCTID:35845000 xref: ncithesaurus:Splenic_Lymphoid_Follicle is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000444 ! lymphoid follicle is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0001959 ! white pulp of spleen relationship: part_of UBERON:0006561 ! non-lymphatic part of lymphoid system [Term] id: UBERON:0001250 name: red pulp of spleen namespace: uberon alt_id: UBERON:FMA_15844-MA_0000756 def: "Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma." [Wikipedia:Red_pulp] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pulpa rubra" EXACT [FMA:15844, FMA:TA] synonym: "red pulp" EXACT [] synonym: "spleen red pulp" EXACT [] synonym: "splenic red pulp" EXACT [] xref: FMA:15844 xref: MA:0000756 xref: SCTID:27579002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png xref: ncithesaurus:Splenic_Red_Pulp is_a: UBERON:1000023 ! spleen pulp [Term] id: UBERON:0001251 name: marginal zone of spleen namespace: uberon alt_id: UBERON:FMA_15852-MA_0000755 def: "region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen." [Wikipedia:Marginal_zone] comment: WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line synonym: "junctional zone of spleen" EXACT [] synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone] synonym: "spleen marginal zone" EXACT [] xref: AAO:0010448 xref: FMA:15852 xref: MA:0000755 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png xref: ncithesaurus:Marginal_Zone is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0002106 ! spleen disjoint_from: UBERON:0004879 ! marginal zone of embryo [Term] id: UBERON:0001252 name: adventitia of ureter namespace: uberon alt_id: UBERON:FMA_15892-MA_0002652 comment: This class was created automatically from a combination of ontologies synonym: "external adventitia of ureter" EXACT [] synonym: "ureter adventitia" EXACT [] synonym: "ureteral adventitia" EXACT [] xref: EMAPA:28114 xref: FMA:15892 xref: MA:0002652 xref: SCTID:392273001 xref: SCTID:47879001 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005742 ! adventitia is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0001253 name: lamina propria of ureter namespace: uberon alt_id: UBERON:FMA_15896-MA_0002653 def: "A lamina propria that is part of a ureter [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "lamina propria mucosa of ureter" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of ureter" EXACT [OBOL:automatic] synonym: "ureter lamina propria" EXACT [] synonym: "ureter lamina propria mucosa" EXACT [OBOL:automatic] synonym: "ureter lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:28841 xref: FMA:15896 xref: MA:0002653 xref: SCTID:2771005 is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0001254 name: urothelium of ureter namespace: uberon alt_id: UBERON:FMA_15897-MA_0002655 synonym: "transitional epithelium of ureter" EXACT [] synonym: "ureter transitional epithelium" EXACT [] synonym: "ureter urothelium" EXACT [] xref: FMA:15897 xref: MA:0002655 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! urothelium [Term] id: UBERON:0001255 name: urinary bladder namespace: uberon alt_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529 def: "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder] comment: editor note: consider adding a 'bladder' grouping class subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bladder" EXACT [] synonym: "excretory canal" BROAD [] xref: AAO:0000623 xref: BTO:0001418 xref: EFO:0000290 xref: EHDAA2:0000174 xref: EHDAA:9328 xref: EMAPA:18321 xref: EV:0100098 xref: FMA:15900 xref: GAID:0000004 xref: MA:0000380 xref: MAT:0000122 xref: MESH:A.05.810.161 xref: MIAA:0000122 xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA xref: SCTID:302512001 xref: VHOG:0000740 xref: XAO:0000154 xref: galen:UrinaryBladder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png xref: ncithesaurus:Bladder is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0002075 ! viscus is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0005179 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pelvis organ relationship: part_of UBERON:0001556 ! lower urinary tract relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0001256 name: wall of urinary bladder namespace: uberon alt_id: UBERON:FMA_15902-MA_0002493 def: "An anatomical wall that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of bladder" EXACT [OBOL:automatic] synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic] synonym: "bladder anatomical wall" EXACT [OBOL:automatic] synonym: "bladder wall" EXACT [OBOL:automatic] synonym: "urinary bladder anatomical wall" EXACT [OBOL:automatic] synonym: "urinary bladder wall" EXACT [] synonym: "wall of bladder" EXACT [OBOL:automatic] xref: BTO:0001462 xref: FMA:15902 xref: MA:0002493 xref: SCTID:362225003 xref: ncithesaurus:Bladder_Wall is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001257 name: trigone of urinary bladder namespace: uberon alt_id: UBERON:FMA_15910-MA_0002492 def: "The trigone is a smooth triangular region of the internal urinary bladder formed by the two ureteral orifices and the internal urethral orifice. The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill. Embryologically, the trigone of the Bladder is derived from the caudal end of mesonephric ducts. In the Female the mesonephric ducts break down but, thus, the Trigone of the Bladder is less prominent but, still present. [WP,unvetted]." [Wikipedia:Trigone_of_urinary_bladder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Lieutaud's trigone" EXACT [] synonym: "deep trigone" EXACT [] synonym: "musculus trigoni vesicae profundus" EXACT [FMA:15910, FMA:TA] synonym: "trigone of bladder" EXACT [] synonym: "trigonum vesicae" EXACT [FMA:15910, FMA:TA] synonym: "urinary bladder trigone" EXACT [] synonym: "vesical trigone" EXACT [] xref: FMA:15910 xref: MA:0002492 xref: SCTID:272663002 xref: galen:TrigoneOfUrinaryBladder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg xref: ncithesaurus:Bladder_Trigone is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001258 name: neck of urinary bladder namespace: uberon alt_id: UBERON:FMA_15912-MA_0002491 def: "The neck of the urinary bladder is the portion of the urinary bladder adjacent to the prostate gland in men. [WP,unvetted]." [Wikipedia:Neck_of_urinary_bladder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bladder neck" EXACT [] synonym: "cervix vesicae" EXACT [FMA:15912, FMA:TA] synonym: "collum vesicae" EXACT [FMA:15912, FMA:TA] synonym: "neck of bladder" EXACT [] synonym: "urinary bladder neck" EXACT [] synonym: "vesical neck" EXACT [] xref: FMA:15912 xref: MA:0002491 xref: SCTID:362227006 xref: galen:UrinaryBladderNeck xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png xref: ncithesaurus:Bladder_Neck is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001259 name: mucosa of urinary bladder namespace: uberon alt_id: UBERON:FMA_15928-MA_0001692 def: "A mucosa that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bladder mucosa" EXACT [] synonym: "bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "bladder mucous membrane" EXACT [OBOL:automatic] synonym: "bladder organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of urinary bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of bladder" EXACT [] synonym: "mucous membrane of urinary bladder" EXACT [] synonym: "organ mucosa of bladder" EXACT [OBOL:automatic] synonym: "organ mucosa of urinary bladder" EXACT [OBOL:automatic] synonym: "tunica mucosa (vesica urinaria)" EXACT [FMA:15928, FMA:TA] synonym: "tunica mucosa vesicae" EXACT [FMA:15928, FMA:TA] synonym: "urinary bladder mucosa" EXACT [] synonym: "urinary bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "urinary bladder mucous membrane" EXACT [OBOL:automatic] synonym: "urinary bladder organ mucosa" EXACT [OBOL:automatic] xref: EFO:0000293 xref: FMA:15928 xref: MA:0001692 xref: SCTID:362224004 xref: galen:MucousMembraneOfUrinaryBladder xref: ncithesaurus:Bladder_Mucosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! mucosa is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001256 ! wall of urinary bladder [Term] id: UBERON:0001260 name: serosa of urinary bladder namespace: uberon alt_id: UBERON:FMA_15932-MA_0001696 def: "A serous membrane that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "bladder serosa" EXACT [] synonym: "bladder serous membrane" EXACT [OBOL:automatic] synonym: "serosa of bladder" EXACT [] synonym: "serous coat of bladder" EXACT [] synonym: "serous coat of urinary bladder" EXACT [] synonym: "serous membrane of bladder" EXACT [OBOL:automatic] synonym: "serous membrane of urinary bladder" EXACT [OBOL:automatic] synonym: "tunica serosa (vesica urinaria)" EXACT [FMA:15932, FMA:TA] synonym: "tunica serosa vesicae" EXACT [FMA:15932, FMA:TA] synonym: "urinary bladder serosa" EXACT [] synonym: "urinary bladder serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of urinary bladder" EXACT [] xref: EMAPA:28661 xref: FMA:15932 xref: MA:0001696 xref: SCTID:5868002 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001256 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! wall of urinary bladder [Term] id: UBERON:0001261 name: lamina propria of urinary bladder namespace: uberon alt_id: UBERON:FMA_15935-MA_0001695 def: "A lamina propria that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bladder lamina propria" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of urinary bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of urinary bladder" EXACT [OBOL:automatic] synonym: "lamina propria of bladder" EXACT [OBOL:automatic] synonym: "urinary bladder lamina propria" EXACT [] synonym: "urinary bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "urinary bladder lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:30088 xref: FMA:15935 xref: MA:0001695 xref: ncithesaurus:Bladder_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001259 ! mucosa of urinary bladder [Term] id: UBERON:0001262 name: wall of intestine namespace: uberon alt_id: UBERON:FMA_15949-MA_0002693 def: "An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "bowel anatomical wall" EXACT [OBOL:automatic] synonym: "bowel wall" EXACT [OBOL:automatic] synonym: "intestinal wall" EXACT [] synonym: "intestine anatomical wall" EXACT [OBOL:automatic] synonym: "intestine wall" EXACT [] synonym: "wall of bowel" EXACT [OBOL:automatic] xref: BTO:0000647 xref: FMA:15949 xref: MA:0002693 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0001263 name: pancreatic acinus namespace: uberon alt_id: UBERON:FMA_16011-MA_0002417 def: "the secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct." [MP:0009145] comment: This class was created automatically from a combination of ontologies synonym: "acinus pancreaticus" EXACT [] synonym: "pancreas acinus" EXACT [] synonym: "pancreatic acini" RELATED PLURAL [] xref: BTO:0000028 xref: FMA:16011 xref: MA:0002417 xref: SCTID:247604006 xref: ncithesaurus:Pancreatic_Acinus is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009842 ! acinus relationship: part_of UBERON:0000017 ! exocrine pancreas relationship: part_of UBERON:0007324 ! pancreatic lobe [Term] id: UBERON:0001264 name: pancreas namespace: uberon alt_id: UBERON:FMA_16017-FMA_16018-FMA_7198-MA_0000120-MA_0001582-MA_0002415-MIAA_0000075-XAO_0000136-XAO_0000137-ZFA_0000140-ZFA_0001249-ZFA_0001260 def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1b2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans[PMID]." [GO:0031016, PMID:16417468, Wikipedia:Pancreas] comment: taxon notes: As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010112 xref: BTO:0000988 xref: EFO:0000855 xref: EHDAA2:0001367 xref: EHDAA:6893 xref: EMAPA:17503 xref: EMAPA:18816 xref: EV:0100092 xref: FMA:7198 xref: GAID:334 xref: MA:0000120 xref: MAT:0000075 xref: MESH:A.03.734 xref: MIAA:0000075 xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA xref: SCTID:181277001 xref: TAO:0000140 xref: VHOG:0000050 xref: XAO:0000136 xref: ZFA:0000140 xref: galen:Pancreas xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Illu_pancrease.svg/200px-Illu_pancrease.svg.png xref: ncithesaurus:Pancreas is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus is_a: UBERON:0005172 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! abdomen organ relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive system relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! digestive system [Term] id: UBERON:0001265 name: trabecula of spleen namespace: uberon alt_id: UBERON:FMA_16027-MA_0000758 comment: This class was created automatically from a combination of ontologies synonym: "spleen trabeculum" EXACT [] synonym: "splenic trabecula" EXACT [] xref: FMA:16027 xref: MA:0000758 xref: SCTID:61987002 xref: ncithesaurus:Splenic_Trabecula is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:1000024 ! parenchyma of spleen [Term] id: UBERON:0001266 name: splenic cord namespace: uberon alt_id: UBERON:FMA_16031-MA_0002671 def: "A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis." [Wikipedia:Cords_of_Billroth] synonym: "cord of Billroth" EXACT [Wikipedia:Cords_of_Billroth] synonym: "cord of Bilroth" EXACT [FMA:16031] xref: FMA:16031 xref: MA:0002671 xref: ncithesaurus:Splenic_Cord is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001250 ! red pulp of spleen [Term] id: UBERON:0001267 name: femoral nerve namespace: uberon alt_id: UBERON:FMA_16486-MA_0001167 def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior crural nerve" EXACT [] xref: EHDAA2:0000507 xref: EHDAA:5655 xref: FMA:16486 xref: GAID:850 xref: MA:0001167 xref: MESH:A.08.800.800.720.450.250 xref: OpenCyc:Mx4rwGC03JwpEbGdrcN5Y29ycA xref: SCTID:181051004 xref: VHOG:0001411 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray823.png/200px-Gray823.png xref: ncithesaurus:Femoral_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001268 name: peritoneal fluid namespace: uberon alt_id: UBERON:FMA_16515-MA_0002531 def: "Transudate contained in the peritoneal cavity.[FMA]" [FMA:FMA, Wikipedia:Peritoneal_fluid] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001031 xref: FMA:16515 xref: MA:0002531 xref: ncithesaurus:Peritoneal_Fluid is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001269 name: acetabular part of hip bone namespace: uberon alt_id: UBERON:FMA_16579-MA_0001335 def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]." [Wikipedia:Acetabulum] comment: In reptiles and in birds, the acetabula are deep sockets.[WP] Note that whilst WP defines this as a surface, MA treats it as a bone. There are other FMA classes that may be better suited to representing the surface. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "acetabulum" EXACT [] xref: AAO:0000770 xref: EHDAA:10661 xref: FMA:16579 xref: GAID:206 xref: MA:0001335 xref: MESH:A.02.835.232.611.108 xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001427 xref: SCTID:182027007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg xref: ncithesaurus:Acetabulum is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007830 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pelvic girdle bone/zone relationship: part_of UBERON:0001486 ! hip joint [Term] id: UBERON:0001270 name: bony pelvis namespace: uberon alt_id: UBERON:FMA_16580-MA_0000532 def: "In humans, the ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls." [http://medical-dictionary.thefreedictionary.com/bony+pelvis] comment: in FMA, this is part of the axial skeletal system. todo: add taxon-specific part of relations connecting sub-structures to this. xref: FMA:16580 xref: SCTID:46633002 is_a: UBERON:0000075 ! subdivision of skeletal system [Term] id: UBERON:0001271 name: pelvic girdle namespace: uberon alt_id: UBERON:FMA_16581-MA_0000293-MIAA_0000182-XAO_0003064-ZFA_0000565 def: "Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]." [FMA:16581, http://onlinelibrary.wiley.com/doi/10.1002/dvdy.22617/full, https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion] comment: Note that this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). See also comments on obo-anatomy mail list subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "girdle - pelvic" EXACT [] synonym: "pelvic girdle region" EXACT [] xref: FMA:16581 xref: SCTID:360010001 xref: ncithesaurus:Pelvic_Girdle is_a: UBERON:0007823 ! limb/fin girdle [Term] id: UBERON:0001272 name: pelvic bone namespace: uberon alt_id: UBERON:FMA_16585-ZFA_0000623 def: "The hip bone, innominate bone or coxal bone is a large, flattened, irregularly shaped bone, constricted in the center and expanded above and below. It has one of the few ball and socket synovial joints in the body b the so called hip joint. It meets its fellow on the opposite side in the middle line in front, and together they form the sides and anterior wall of the pelvic cavity. Together with the sacrum and coccyx, it comprises the pelvis. [WP,unvetted]." [Wikipedia:Hip_bone] comment: The hip bone first appears in fishes, where it consists of a simple, usually triangular bone, to which the pelvic fin articulates. The hip bones on each side usually connect with each other at the forward end, and are even solidly fused in lungfishes and sharks, but they never attach to the vertebral column[WP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "basipterygium" EXACT [] synonym: "bone of pelvic girdle" EXACT [] synonym: "coxal bone" EXACT [] synonym: "hip bone" EXACT [] synonym: "innominate bone" EXACT [] synonym: "os coxae" EXACT [FMA:16585, FMA:TA] xref: FMA:16585 xref: GAID:205 xref: MESH:A.02.835.232.611 xref: SCTID:361776002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png xref: ncithesaurus:Pelvic_Bone is_a: UBERON:0001474 ! bone is_a: UBERON:0002428 ! limb bone is_a: UBERON:0007830 ! pelvic girdle bone/zone relationship: part_of UBERON:0001464 ! hip relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle [Term] id: UBERON:0001273 name: ilium namespace: uberon alt_id: UBERON:FMA_16589-MA_0001336 def: "The ilium is the uppermost and largest bone of the pelvis, and appears in most vertebrates including mammals and birds, but not bony fish. All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium[WP]." [Wikipedia:Ilium_(bone)] comment: Note that this is_a hip bone in MA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "os iliacum" EXACT [] synonym: "os ilii" EXACT [] xref: AAO:0000772 xref: EFO:0003049 xref: FMA:16589 xref: GAID:207 xref: MA:0001336 xref: MESH:A.02.835.232.611.434 xref: OpenCyc:Mx4rvhwFJ5wpEbGdrcN5Y29ycA xref: SCTID:182029005 xref: galen:Ilium xref: ncithesaurus:Ilium is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region relationship: part_of UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001272 ! pelvic bone property_value: "dubious_for_taxon" NCBITaxon:8570 [Term] id: UBERON:0001274 name: ischium namespace: uberon alt_id: UBERON:FMA_16592-MA_0001337 def: "The ischium forms the lower and back part of the hip bone (os coxae). Situated below the ilium and behind the pubis, it is one of these three bones whose fusion creates the coxa. It is divisible into three portions: Body of ischium - the portion that supports weight while sitting (especially noticeable on a hard surface). Superior ramus of the ischium Inferior ramus of the ischium It is the strongest of the coxal bones. Clinically, avulsion fracture of the ischial apophysis may occur. [WP,unvetted]." [Wikipedia:Ischium] comment: Note that this is_a hip bone in MA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000860 xref: FMA:16592 xref: GAID:208 xref: MA:0001337 xref: MESH:A.02.835.232.611.548 xref: OpenCyc:Mx4rvlzMKpwpEbGdrcN5Y29ycA xref: SCTID:182025004 xref: galen:Ischium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg xref: ncithesaurus:Ischium is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region relationship: part_of UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001272 ! pelvic bone [Term] id: UBERON:0001275 name: pubis namespace: uberon alt_id: UBERON:FMA_16595-MA_0001338 def: "the ventral and anterior of the three principal bones composing either half of the pelvis. it is covered by a layer of fat, which is covered by the mons pubis. It is divisible into a body, a superior ramus and an inferior ramus. The body forms one-fifth of the acetabulum, contributing by its external surface both to the lunate surface and the acetabular fossa. Its internal surface enters into the formation of the wall of the lesser pelvis and gives origin to a portion of the obturator internus. In the female, the pubic bone is anterior to the urethral sponge. The left and right hip bones join at the pubic symphysis. The pubis is the lower limit of the suprapubic region[WP]." [Wikipedia:Pubis_(bone)] comment: Note that this is_a hip bone in MA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "os pubis" RELATED [Wikipedia:Pubis_%28bone%29] synonym: "pubic bone" RELATED [Wikipedia:Pubis_%28bone%29] synonym: "pubis bone" RELATED [Wikipedia:Pubis_%28bone%29] xref: AAO:0000861 xref: EMAPA:18728 xref: FMA:16595 xref: MA:0001338 xref: MESH:A.02.835.232.611.781 xref: SCTID:182035005 xref: galen:Pubis xref: ncithesaurus:Pubic_Bone is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region relationship: part_of UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001272 ! pelvic bone [Term] id: UBERON:0001276 name: epithelium of stomach namespace: uberon alt_id: UBERON:FMA_17091-MA_0001610 def: "the epithelial layer of the stomach ." [MP:0000471] comment: in FMA this is classified as simple columnar, MA divides this into squamous and glandular synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic] synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic] synonym: "epithelium of ventriculus" EXACT [OBOL:automatic] synonym: "gastric epithelium" RELATED [BTO:0000500] synonym: "stomach epithelial tissue" EXACT [OBOL:automatic] synonym: "stomach epithelium" EXACT [OBOL:automatic] synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic] synonym: "ventriculus epithelium" EXACT [OBOL:automatic] xref: BTO:0000500 xref: EHDAA2:0001918 xref: FMA:17091 xref: MA:0001610 xref: SCTID:64977002 xref: VHOG:0001433 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium relationship: part_of UBERON:0001199 ! mucosa of stomach [Term] id: UBERON:0001277 name: intestinal epithelium namespace: uberon alt_id: UBERON:FMA_17229-ZFA_0005124 def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005" [Wikipedia:Intestinal_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "bowel epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bowel" EXACT [OBOL:automatic] synonym: "epithelial tissue of intestine" EXACT [OBOL:automatic] synonym: "epithelium of bowel" EXACT [OBOL:automatic] synonym: "epithelium of intestine" EXACT [OBOL:automatic] synonym: "intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "intestine epithelium" RELATED [] synonym: "villous epithelium" EXACT [ZFA:0005124] xref: BTO:0000781 xref: FMA:17229 xref: MA:0001536 xref: SCTID:266135004 xref: TAO:0005124 xref: ZFA:0005124 xref: ncithesaurus:Intestinal_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001278 name: epithelium of large intestine namespace: uberon alt_id: UBERON:FMA_17301-MA_0001545 def: "An epithelium that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal epithelium" EXACT [] synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "large intestine epithelium" EXACT [] xref: EMAPA:19257 xref: EMAPA:19262 xref: FMA:17301 xref: MA:0001545 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001279 name: portal triad namespace: uberon alt_id: UBERON:FMA_17523-MA_0002499 def: "a component of the hepatic lobule, that consists of: hepatic artery, hepatic portal vein, bile duct, lymphatic vessels, and the branch of the vagus nerve." [Wikipedia:Portal_triad] comment: The misnomer \"portal triad\" traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "trias hepatica" EXACT [] xref: FMA:17523 xref: MA:0002499 xref: SCTID:362192000 xref: ncithesaurus:Portal_Triad is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001172 ! hepatic acinus [Term] id: UBERON:0001280 name: liver parenchyma namespace: uberon alt_id: UBERON:0003223 alt_id: UBERON:FMA_17540-MA_0000366 def: "the functional units of the liver including the lobules." [MP:0008986] comment: This class was created automatically from a combination of ontologies synonym: "hepatic parenchyma" EXACT [FMA:17540] synonym: "hepatic parenchyme" RELATED [VHOG:0000539] synonym: "liver parenchyme" EXACT [XAO:0000454] synonym: "parenchyma of liver" EXACT [FMA:17540] xref: AAO:0010405 xref: EHDAA2:0001004 xref: EHDAA:2201 xref: EMAPA:17203 xref: FMA:17540 xref: MA:0000366 xref: SCTID:363535004 xref: VHOG:0000539 xref: XAO:0000454 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! parenchyma [Term] id: UBERON:0001281 name: hepatic sinusoid namespace: uberon alt_id: UBERON:0003275 alt_id: UBERON:FMA_17543-MA_0000367-ZFA_0005091 def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "hepatic sinusoids" RELATED [] synonym: "liver sinusoid" EXACT [] synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic] synonym: "sinusoid of liver" EXACT [OBOL:automatic] synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic] synonym: "vas capillare sinusoideum" EXACT [] xref: EHDAA2:0000999 xref: EHDAA:2199 xref: EHDAA:3997 xref: EHDAA:4003 xref: EHDAA:6992 xref: EHDAA:8084 xref: EMAPA:17365 xref: FMA:17543 xref: MA:0000367 xref: SCTID:67435004 xref: TAO:0005091 xref: VHOG:0000708 xref: ZFA:0005091 xref: ncithesaurus:Hepatic_Sinusoid is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0003909 ! sinusoid is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0004647 ! liver lobule relationship: part_of UBERON:0002201 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! vasculature of trunk [Term] id: UBERON:0001282 name: intralobular bile duct namespace: uberon alt_id: UBERON:FMA_17545-MA_0002669 def: "The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver." [Wikipedia:Canals_of_Hering] comment: Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "canal of Hering" RELATED [] synonym: "canal of Herring" EXACT [FMA:17545] synonym: "canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering] synonym: "cholangiole" EXACT [FMA:17545] synonym: "duct of Herring" RELATED [Wikipedia:Canals_of_Hering] synonym: "intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering] xref: BTO:0002840 xref: FMA:17545 xref: MA:0002669 xref: SCTID:227002 xref: SCTID:269922006 xref: ncithesaurus:Canal_of_Hering is_a: UBERON:0003704 ! intrahepatic bile duct relationship: part_of UBERON:0001172 ! hepatic acinus relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0001283 name: bile canaliculus namespace: uberon alt_id: UBERON:FMA_17547-MA_0002495 def: "Fine tubular canals running between liver cells, throughout the parenchyma, usually occurring singly between each adjacent pair of cells, and forming a three-dimensional network of polyhedral meshes, with a single cell in each mesh[BTO]. A thin tube that collects bile secreted by hepatocytes. The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP,unvetted]." [BTO:0002841, Wikipedia:Bile_canaliculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bile canaliculi" RELATED PLURAL [Wikipedia:Bile_canaliculus] synonym: "bile capillary" RELATED [BTO:0002841] synonym: "biliary canaliculus" RELATED [BTO:0002841] xref: BTO:0002841 xref: FMA:17547 xref: MA:0002495 xref: MESH:A.03.159.183.158.125 xref: SCTID:270023005 xref: ZFA:0005163 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Gray1094.png/200px-Gray1094.png xref: ncithesaurus:Bile_Canaliculus is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001172 ! hepatic acinus relationship: part_of UBERON:0002394 ! bile duct relationship: part_of UBERON:0004647 ! liver lobule relationship: part_of UBERON:0005452 ! hepatic plate [Term] id: UBERON:0001284 name: renal column namespace: uberon alt_id: UBERON:FMA_17633-MA_0001651 def: "The renal column (or Bertin column, or column of Bertin) is a medullary extension of the renal cortex in between the renal pyramids. It allows the cortex to be better anchored. Each column consists of lines of blood vessels and urinary tubes and a fibrous material. [WP,unvetted]." [Wikipedia:Renal_column] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "renal column of bertini" EXACT [] xref: FMA:17633 xref: MA:0001651 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002189 ! outer cortex of kidney [Term] id: UBERON:0001285 name: nephron namespace: uberon alt_id: UBERON:FMA_17640-MA_0000375-XAO_0000145 def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron] comment: Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mature nephron" NARROW [EMAPA:28491] xref: BTO:0000924 xref: EMAPA:28491 xref: EV:0100384 xref: FMA:17640 xref: GAID:428 xref: MA:0000375 xref: MESH:A.05.810.453.736 xref: SCTID:361337001 xref: ZFA:0005282 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: ncithesaurus:Nephron is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0007684 ! uriniferous tubule relationship: part_of UBERON:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesonephros [Term] id: UBERON:0001286 name: Bowman's space namespace: uberon alt_id: UBERON:FMA_17676-MA_0001664 def: "a narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP]" [MP:0011499, Wikipedia:Bowman's_space, http://medical-dictionary.thefreedictionary.com/bowman's+space] comment: TODO - fix ZFA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bowman's space" EXACT [] synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space] synonym: "glomerular capsule space" EXACT [MP:0011499] synonym: "glomerular urinary space" EXACT [MP:0011499] synonym: "inter-glomerular space" EXACT [ZFA:0005283, ZFA:0005312] synonym: "pronephric capsular space" EXACT [ZFA:0005312] synonym: "renal capsular space" EXACT [ZFA:0005283] synonym: "urinary space" EXACT [] synonym: "urinary space of renal corpuscle" EXACT [EMAPA:28263] xref: EMAPA:27985 xref: EMAPA:28263 xref: FMA:17676 xref: MA:0001664 xref: SCTID:244284006 xref: ZFA:0005283 xref: ZFA:0005312 xref: ncithesaurus:Urinary_Space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001230 ! glomerular capsule relationship: part_of UBERON:0002120 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pronephros [Term] id: UBERON:0001287 name: proximal convoluted tubule namespace: uberon alt_id: UBERON:FMA_17693-MA_0001669-ZFA_0001620 def: "The proximal tubule is the portion of the duct system of the nephron of the kidney which leads from Bowman's capsule to the loop of Henle[WP]" [Wikipedia:Proximal_convoluted_tubule] comment: TODO - cleanly define difference between proximal tubule and proximal convoluted tubule. Make definition applicable across species. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "1st convoluted tubule" RELATED [] synonym: "PCT" RELATED [] synonym: "first convoluted tubule" RELATED [] synonym: "proximal convoluted renal tubule" EXACT [] synonym: "tubulus contortus proximalis" EXACT [] xref: EMAPA:28287 xref: EV:0100388 xref: FMA:17693 xref: MA:0001669 xref: SCTID:362220008 xref: ZFA:0005290 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png is_a: UBERON:0004134 ! proximal tubule is_a: UBERON:0006534 ! renal convoluted tubule is_a: UBERON:0006553 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! renal duct relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0001288 name: loop of Henle namespace: uberon alt_id: UBERON:FMA_17698-MA_0001675 def: "Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]." [Wikipedia:Loop_of_henle] comment: Note that the definitions of some kidney parts refer to Henle's loop, even in species where this may not be present. Requires review. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Henle loop" EXACT [] synonym: "henle's loop" EXACT [] xref: BTO:0004608 xref: EMAPA:29665 xref: EMAPA:29679 xref: EV:0100390 xref: FMA:17698 xref: GAID:437 xref: MA:0001675 xref: MESH:A.05.810.453.736.560.610 xref: SCTID:361335009 xref: VHOG:0001270 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: ncithesaurus:Loop_of_Henle is_a: UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0001289 name: descending limb of loop of Henle namespace: uberon alt_id: UBERON:FMA_17705-MA_0001679 def: "Portion of the renal tubule constituting the first part of the loop of Henle[WP]." [Wikipedia:Descending_limb_of_loop_of_henle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "descending limb" BROAD [] synonym: "descending limb of Henle's loop" EXACT [] synonym: "loop of Henle descending limb" EXACT [] xref: FMA:17705 xref: MA:0001679 xref: SCTID:245350001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: ncithesaurus:Descending_Limb_of_the_Henle_s_Loop is_a: UBERON:0007685 ! region of nephron tubule relationship: part_of UBERON:0001288 ! loop of Henle [Term] id: UBERON:0001290 name: proximal straight tubule namespace: uberon alt_id: UBERON:0005166 alt_id: UBERON:FMA_17716-MA_0002614-ZFA_0001621 def: "part of the descending limb of the renal tubule, extending from the proximal convoluted tubule to the thin tubule[BTO]." [BTO:0000055, Wikipedia:Proximal_straight_tubule] comment: TODO - is S3 exactly coincident with PST? Check also relationship to DL. todo - ensure relationships work across species (loop of Henle) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "S3" EXACT [GO:0072020] synonym: "pars recta" RELATED [] synonym: "pars recta tubuli renalis" RELATED [BTO:0000055] synonym: "proximal tubule segment 3" RELATED [MA:0002614] synonym: "thick descending limb of proximal tubule" EXACT [] synonym: "tubulus rectus proximalis" EXACT [] xref: BTO:0000055 xref: EMAPA:29661 xref: FMA:17716 xref: MA:0002614 xref: ZFA:0005291 is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0008404 ! proximale tubular epithelium is_a: UBERON:0006553 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! renal duct is_a: UBERON:0009035 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! renal straight tubule relationship: part_of UBERON:0001289 ! descending limb of loop of Henle relationship: part_of UBERON:0004134 ! proximal tubule relationship: part_of UBERON:0006542 ! outer medulla outer stripe loop of henle [Term] id: UBERON:0001291 name: thick ascending limb of loop of Henle namespace: uberon alt_id: UBERON:FMA_17717-MA_0001676 def: "a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]." [Wikipedia:Thick_ascending_limb_of_loop_of_Henle] comment: TODO: thick/thin check. Also - does the loop of Henle overlap the distal convoluted tubule? FMA divides DCT into straight and convoluted portions subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ascending thick limb" EXACT [] synonym: "distal straight tubule" EXACT [] synonym: "loop of Henle ascending limb thick segment" EXACT [MA:0001677] synonym: "straight portion of distal convoluted renal tubule" EXACT [] synonym: "straight portion of distal convoluted tubule" EXACT [FMA:17722] synonym: "thick ascending limb" EXACT [] synonym: "thick ascending limb of Henle's loop" EXACT [] synonym: "thick ascending limb of distal tubule" EXACT [FMA:17722] synonym: "tubulus rectus distalis" EXACT [FMA:17722] xref: EMAPA:28396 xref: EMAPA:29671 xref: FMA:17722 xref: MA:0001677 xref: SCTID:244953001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0008408 ! distal tubular epithelium is_a: UBERON:0009035 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! renal straight tubule relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle [Term] id: UBERON:0001292 name: distal convoluted tubule namespace: uberon alt_id: UBERON:FMA_17721-MA_0001666 def: "a portion of kidney nephron between the loop of Henle and the collecting duct system." [Wikipedia:Distal_convoluted_tubule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "distal convoluted renal tubule" EXACT [] synonym: "second convoluted tubule" RELATED [] synonym: "tubulus contortus distalis" EXACT [] xref: EMAPA:28393 xref: EV:0100389 xref: FMA:17721 xref: MA:0001666 xref: SCTID:361336005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png xref: ncithesaurus:Distal_Convoluted_Tubule is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0006534 ! renal convoluted tubule is_a: UBERON:0006853 ! renal cortex tubule relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0001293 name: outer medulla of kidney namespace: uberon alt_id: UBERON:FMA_17733-MA_0001653 def: "The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]." [GOC:mtg_kidney_jan10] synonym: "kidney outer medulla" RELATED [BTO:0001746] synonym: "outer renal medulla" EXACT [] synonym: "outer zone of medulla of kidney" EXACT [] synonym: "outer zone of renal medulla" EXACT [] synonym: "renal outer medulla" EXACT [BTO:0001746] synonym: "zona externa (medullaris renalis)" EXACT [FMA:17733, FMA:TA] xref: BTO:0001746 xref: EMAPA:28310 xref: FMA:17733 xref: MA:0001653 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000362 ! renal medulla relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001294 name: inner medulla of kidney namespace: uberon alt_id: UBERON:FMA_17734-MA_0001652 def: "Innermost region of the mammalian kidney." [GO:0072053] comment: Taxon notes: unique to mammals[GO:0072053] synonym: "inner renal medulla" EXACT [] synonym: "inner zone of medulla of kidney" EXACT [] synonym: "inner zone of renal medulla" EXACT [] synonym: "kidney inner medulla" RELATED [BTO:0001745] synonym: "renal inner medulla" EXACT [BTO:0001745] synonym: "set of inner region of renal pyramids" EXACT [] synonym: "zona interna (medullaris renalis)" EXACT [FMA:17734, FMA:TA] xref: BTO:0001745 xref: EMAPA:28349 xref: FMA:17734 xref: MA:0001652 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000362 ! renal medulla relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001295 name: endometrium namespace: uberon alt_id: UBERON:FMA_17742-MA_0000390-MIAA_0000319 def: "inner membrane of the mammalian uterus." [Wikipedia:Endometrium] comment: AO notes: in FMA this is subdivided into basal and outer. In MA there is a single child term, endometrium epithelium subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tunica mucosa (endometrium)" EXACT [] xref: BTO:0001422 xref: EFO:0000980 xref: EMAPA:29917 xref: EV:0100115 xref: FMA:17742 xref: GAID:377 xref: MA:0000390 xref: MAT:0000319 xref: MESH:A.05.360.319.679.490 xref: MIAA:0000319 xref: SCTID:278867007 xref: VHOG:0001285 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg xref: ncithesaurus:Endometrium is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0001296 name: myometrium namespace: uberon alt_id: UBERON:FMA_17743-MA_0000391 def: "middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue." [Wikipedia:Myometrium, http://en.wikipedia.org/wiki/Myometrium] comment: The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tunica muscularis (myometrium)" EXACT [] synonym: "uterine smooth muscle" RELATED [] xref: BTO:0000907 xref: EFO:0001970 xref: EMAPA:29923 xref: EV:0100116 xref: FMA:17743 xref: GAID:171 xref: MA:0000391 xref: MESH:A.02.633.570.500 xref: MeSH:D009215 xref: SCTID:279879004 xref: VHOG:0001281 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg xref: ncithesaurus:Myometrium is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0001297 name: serosa of uterus namespace: uberon alt_id: UBERON:FMA_17744-MA_0001729 def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium] comment: TODO - check for parallel structure with peritoneum synonym: "perimetrium" EXACT [http://en.wikipedia.org/wiki/Perimetrium] synonym: "serous coat of uterus" EXACT [] synonym: "serous membrane of uterus" EXACT [OBOL:automatic] synonym: "tunica serosa (perimetrium)" EXACT [] synonym: "tunica serosa uteri" EXACT [FMA:17744, FMA:TA] synonym: "uterine serosa" EXACT [] synonym: "uterus serosa" EXACT [] synonym: "uterus serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of uterus" EXACT [] xref: FMA:17744 xref: MA:0001729 xref: SCTID:253705006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg xref: ncithesaurus:Perimetrium is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0001298 name: psoas major namespace: uberon alt_id: UBERON:FMA_18060-MA_0002358 def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [Wikipedia:Psoas_major] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "psoas major muscle" EXACT [] xref: BTO:0001877 xref: EMAPA:18169 xref: FMA:18060 xref: MA:0002358 xref: OpenCyc:Mx4rwU5ZfZwpEbGdrcN5Y29ycA xref: SCTID:244952006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: ncithesaurus:Psoas_Major is_a: UBERON:0008450 ! psoas relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001299 name: glans penis namespace: uberon alt_id: UBERON:FMA_18247-MA_0002726 def: "The glans penis (or simply glans) is the sensitive bulbous structure at the distal end of the penis. It is also commonly referred to as the 'head' of the penis. Slang terms include 'helmet', 'nob' (or 'knob'), and 'bell end', and all refer to its distinctive shape. The glans penis is anatomically homologous to the clitoral glans of the female. When the penis is flaccid it is wholly or partially covered by the foreskin, except in men who have been fully circumcised. The foreskin serves to protect this delicate mucous membrane covered structure. [WP,unvetted]." [Wikipedia:Glans_penis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "balanus" RELATED [BTO:0003118] xref: BTO:0003118 xref: EMAPA:18988 xref: EMAPA:29288 xref: EV:0100108 xref: FMA:18247 xref: GAID:0000012 xref: MA:0002726 xref: OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA xref: SCTID:263378009 xref: VHOG:0001475 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png xref: ncithesaurus:Glans_Penis is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0001300 name: scrotum namespace: uberon alt_id: UBERON:FMA_18252-MA_0000409 def: "In some male mammals the scrotum (also referred to as the cod) is a protuberance of skin and muscle containing the testicles. It is an extension of the abdomen, and is located between the penis and anus. In humans and some other mammals, the base of the scrotum becomes covered with pubic hair at puberty. In common speech, the scrotum is often improperly referred to as the testicles, which actually refer to organs encased inside the scrotum. The scrotum is homologous to the labia majora in females. It becomes tight when sexually aroused. [WP,unvetted]." [Wikipedia:Scrotum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0003098 xref: EMAPA:19296 xref: FMA:18252 xref: GAID:393 xref: MA:0000409 xref: MESH:A.05.360.444.661 xref: OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA xref: SCTID:265794003 xref: galen:Scrotum xref: http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png xref: ncithesaurus:Scrotum is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0004053 ! external male genitalia [Term] id: UBERON:0001301 name: epididymis namespace: uberon alt_id: UBERON:FMA_18255-MA_0000397-MIAA_0000130 def: "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis] comment: Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "epididymus" EXACT [] xref: BTO:0000408 xref: EFO:0000982 xref: EMAPA:19290 xref: EV:0100103 xref: FMA:18255 xref: GAID:397 xref: MA:0000397 xref: MAT:0000130 xref: MESH:A.05.360.444.849.286 xref: MIAA:0000130 xref: SCTID:181432000 xref: VHOG:0001265 xref: galen:Epididymis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg xref: ncithesaurus:Epididymis is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0006947 ! male genital duct [Term] id: UBERON:0001302 name: right uterine tube namespace: uberon alt_id: UBERON:FMA_18483-MA_0001717 def: "A fallopian tube that is part of a right side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "right fallopian tube" EXACT [] synonym: "right oviduct" EXACT [] xref: FMA:18483 xref: MA:0001717 xref: SCTID:280106006 xref: ncithesaurus:Right_Fallopian_Tube is_a: UBERON:0003889 ! fallopian tube [Term] id: UBERON:0001303 name: left uterine tube namespace: uberon alt_id: UBERON:FMA_18484-MA_0001716 def: "A fallopian tube that is part of a left side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "left fallopian tube" EXACT [] synonym: "left oviduct" EXACT [] xref: FMA:18484 xref: MA:0001716 xref: SCTID:280107002 xref: ncithesaurus:Left_Fallopian_Tube is_a: UBERON:0003889 ! fallopian tube [Term] id: UBERON:0001304 name: germinal epithelium of ovary namespace: uberon alt_id: UBERON:FMA_18629-MA_0001711 def: "layer of simple cuboidal cells covering surface of ovary[WP]." [PMID:16923182, Wikipedia:Germinal_epithelium_(female), http://en.wikipedia.org/wiki/Talk:Germinal_epithelium_%28female%29] comment: Controversial - see article. Requires expert input. Also check BTO placement synonym: "epithelium superficiale (ovarium)" EXACT [] synonym: "female coelomic epithelium" RELATED [EMAPA:17384] synonym: "germinal epithelium (female)" EXACT [Wikipedia:Germinal_epithelium_(female)] synonym: "ovarian surface epithelium" EXACT [BTO:0004483] synonym: "ovary germinal epithelium" EXACT [] synonym: "surface epithelium of ovary" EXACT [] xref: BTO:0004483 xref: EHDAA:8126 xref: EMAPA:27564 xref: FMA:18629 xref: MA:0001711 xref: RETIRED_EHDAA2:0001361 xref: SCTID:258308007 xref: VHOG:0000630 xref: ncithesaurus:Ovarian_Surface_Epithelium is_a: UBERON:0000484 ! simple cuboidal epithelium relationship: part_of UBERON:0000992 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! female gonad [Term] id: UBERON:0001305 name: ovarian follicle namespace: uberon alt_id: UBERON:FMA_18640-MA_0001707-ZFA_0001110 def: "Ovarian follicles are the basic units of female reproductive biology, each of which is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)[WP]." [Wikipedia:Ovarian_follicle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "egg follicle" RELATED [] synonym: "follicle of ovary" EXACT [] synonym: "follicle of ovary viewed macroscopically" EXACT [FMA:18640] synonym: "ovary follicle" EXACT [] xref: BTO:0000475 xref: FMA:18640 xref: GAID:371 xref: MA:0001707 xref: MAT:0000449 xref: MESH:A.05.360.319.114.630.535 xref: SCTID:361111009 xref: TAO:0001110 xref: VHOG:0001536 xref: ZFA:0001110 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG xref: ncithesaurus:Ovarian_Follicle is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0001306 name: cumulus oophorus namespace: uberon alt_id: UBERON:FMA_18659-MA_0002414 def: "At one part of the mature follicle, the cells of the membrana granulosa are collected into a mass which projects into the cavity of the follicle. This cluster of cells is termed the cumulus oophorus (Latin cumulus=heap, Greek oo=egg + phorus=carrying) discus proligerus, and it is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,unvetted]." [Wikipedia:Cumulus_oophorus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cumulus ovaricus" EXACT [] xref: FMA:18659 xref: MA:0002414 xref: SCTID:258586009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1164.png/200px-Gray1164.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001305 ! ovarian follicle relationship: part_of UBERON:0005170 ! ovary stratum granulosum [Term] id: UBERON:0001307 name: capsule of ovary namespace: uberon alt_id: UBERON:FMA_18662-MA_0001706 comment: This class was created automatically from a combination of ontologies synonym: "ovarian capsule" EXACT [] synonym: "ovary capsule" EXACT [] xref: FMA:18662 xref: MA:0001706 xref: SCTID:258491008 xref: ncithesaurus:Ovarian_Capsule is_a: UBERON:0003893 ! capsule [Term] id: UBERON:0001308 name: external iliac artery namespace: uberon alt_id: UBERON:FMA_18805-MA_0001973 def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [Wikipedia:External_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004666 xref: EHDAA2:0000463 xref: EHDAA:4337 xref: EMAPA:17614 xref: FMA:18805 xref: MA:0001973 xref: OpenCyc:Mx4rvkh47pwpEbGdrcN5Y29ycA xref: SCTID:181352000 xref: galen:ExternalIliacArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray539.png/200px-Gray539.png xref: ncithesaurus:External_Iliac_Artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005609 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! iliac artery relationship: part_of UBERON:0001191 ! common iliac artery [Term] id: UBERON:0001309 name: internal iliac artery namespace: uberon alt_id: UBERON:FMA_18808-MA_0001974 def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [Wikipedia:Internal_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004667 xref: EMAPA:17860 xref: FMA:18808 xref: MA:0001974 xref: SCTID:181346001 xref: galen:InternalIliacArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Iliac_artery_bifurcation.PNG/200px-Iliac_artery_bifurcation.PNG xref: ncithesaurus:Internal_Iliac_Artery is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005609 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! iliac artery relationship: part_of UBERON:0001191 ! common iliac artery [Term] id: UBERON:0001310 name: umbilical artery namespace: uberon alt_id: UBERON:FMA_18820-MA_0002072 def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [Wikipedia:Umbilical_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000841 xref: EHDAA:1026 xref: EHDAA:410 xref: EMAPA:16331 xref: EMAPA:16372 xref: FMA:18820 xref: GAID:516 xref: MA:0002072 xref: MESH:A.07.231.114.929 xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g xref: RETIRED_EHDAA2:0002106 xref: SCTID:261404000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png xref: ncithesaurus:Umbilical_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0010260 ! umbilical blood vessel [Term] id: UBERON:0001311 name: inferior vesical artery namespace: uberon alt_id: UBERON:FMA_18823-MA_0002079 def: "The INF vesical artery is an artery in the pelvis that supplies the lower part of the bladder. [WP,unvetted]." [Wikipedia:Inferior_vesical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria vesicali inferior" EXACT [] xref: FMA:18823 xref: MA:0002079 xref: SCTID:43210002 xref: ncithesaurus:Inferior_Vesical_Artery is_a: UBERON:0009027 ! vesical artery [Term] id: UBERON:0001312 name: superior vesical artery namespace: uberon alt_id: UBERON:FMA_18839-MA_0002080 def: "The superior vesical artery supplies numerous branches to the upper part of the bladder. From one of these a slender vessel, the artery to the ductus deferens, takes origin and accompanies the duct in its course to the testis, where it anastomoses with the internal spermatic artery. Other branches supply the ureter. The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery. [WP,unvetted]." [Wikipedia:Superior_vesical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria vesicalis superior" EXACT [] xref: FMA:18839 xref: MA:0002080 xref: SCTID:113268007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Internal_iliac_branches.PNG/200px-Internal_iliac_branches.PNG xref: ncithesaurus:Superior_Vesical_Artery is_a: UBERON:0009027 ! vesical artery [Term] id: UBERON:0001313 name: iliolumbar artery namespace: uberon alt_id: UBERON:FMA_18845-MA_0001976 def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [Wikipedia:Iliolumbar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ilio-lumbar artery" EXACT [] xref: FMA:18845 xref: MA:0001976 xref: SCTID:113267002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: ncithesaurus:Iliolumbar_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001314 name: obturator artery namespace: uberon alt_id: UBERON:FMA_18865-MA_0002008 def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [Wikipedia:Obturator_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:18865 xref: MA:0002008 xref: SCTID:244302006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray547.png/200px-Gray547.png xref: ncithesaurus:Obturator_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001315 name: superior gluteal artery namespace: uberon alt_id: UBERON:FMA_18868-MA_0002054 def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [Wikipedia:Superior_gluteal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria glutealis superior" EXACT [] xref: FMA:18868 xref: MA:0002054 xref: SCTID:181354004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png xref: ncithesaurus:Gluteal_Artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001015 ! musculature [Term] id: UBERON:0001316 name: external iliac vein namespace: uberon alt_id: UBERON:FMA_18883-MA_0002144 def: "The external iliac veins are large veins that connect the femoral veins to the common iliac veins. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,unvetted]." [Wikipedia:External_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000464 xref: FMA:18883 xref: MA:0002144 xref: OpenCyc:Mx4rwQUYtZwpEbGdrcN5Y29ycA xref: SCTID:181400000 xref: galen:ExternalIliacVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif xref: ncithesaurus:External_Iliac_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0005610 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! iliac vein [Term] id: UBERON:0001317 name: internal iliac vein namespace: uberon alt_id: UBERON:FMA_18884-MA_0002145 def: "The internal iliac vein (hypogastric vein) begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [Wikipedia:Internal_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000874 xref: FMA:18884 xref: MA:0002145 xref: SCTID:181399007 xref: VHOG:0000749 xref: galen:InternalIliacVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Internaliliacv.png/200px-Internaliliacv.png xref: ncithesaurus:Internal_Iliac_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0005610 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! iliac vein [Term] id: UBERON:0001318 name: inferior vesical vein namespace: uberon alt_id: UBERON:FMA_18890-MA_0002264 comment: This class was created automatically from a combination of ontologies xref: FMA:18890 xref: MA:0002264 is_a: UBERON:0002460 ! vesical vein [Term] id: UBERON:0001319 name: vaginal vein namespace: uberon alt_id: UBERON:FMA_18899-MA_0002251 def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "vagina vein" EXACT [OBOL:automatic] synonym: "vein of vagina" EXACT [OBOL:automatic] xref: FMA:18899 xref: MA:0002251 xref: SCTID:424336009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png is_a: UBERON:0001344 ! epithelium of vagina is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001320 name: iliolumbar vein namespace: uberon alt_id: UBERON:FMA_18902-MA_0002146 def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [Wikipedia:Iliolumbar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ilio-lumbar vein" EXACT [] xref: FMA:18902 xref: MA:0002146 xref: SCTID:286793006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: ncithesaurus:Iliolumbar_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001321 name: obturator vein namespace: uberon alt_id: UBERON:FMA_18914-MA_0002183 def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [Wikipedia:Obturator_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:18914 xref: MA:0002183 xref: SCTID:20146009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: ncithesaurus:Obturator_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001322 name: sciatic nerve namespace: uberon alt_id: UBERON:FMA_19034-MA_0001172 def: "The sciatic nerve (also known as the ischiatic nerve) is a large nerve in humans and other animals. It begins in the lower back and runs through the buttock and down the lower limb. It is the longest and widest single nerve in the human body. The sciatic supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. In humans, it is derived from spinal nerves L4 through S3. It contains fibres from both the anterior and posterior divisions of the lumbosacral plexus. [WP,edited]." [Wikipedia:Sciatic_nerve] comment: Taxon notes: mouse sciatic nerve origins predominantly from the third lumbar (L3) and L4 spinal nerves, unlike the L4 and L5 in rats - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/ subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ischiadic nerve" RELATED [Wikipedia:Sciatic_nerve] synonym: "ischiatic nerve" RELATED [Wikipedia:Sciatic_nerve] synonym: "nervus ischiadicus" RELATED [BTO:0001221] synonym: "nervus sciaticus" RELATED [BTO:0001221] xref: BTO:0001221 xref: EFO:0001417 xref: EHDAA2:0001779 xref: EHDAA:5659 xref: EMAPA:18577 xref: FMA:19034 xref: GAID:852 xref: MA:0001172 xref: MESH:A.08.800.800.720.450.760 xref: NIF_GrossAnatomy:birnlex_1133 xref: OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA xref: SCTID:181050003 xref: VHOG:0000894 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png xref: ncithesaurus:Sciatic_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! leg nerve is_a: UBERON:0003442 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hindlimb nerve relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus [Term] id: UBERON:0001323 name: tibial nerve namespace: uberon alt_id: UBERON:FMA_19035-MA_0001173 def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [Wikipedia:Tibial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "medial popliteal nerve" EXACT [] xref: FMA:19035 xref: GAID:854 xref: MA:0001173 xref: MESH:A.08.800.800.720.450.760.820 xref: OpenCyc:Mx4rwNya8JwpEbGdrcN5Y29ycA xref: SCTID:181078002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1a/Gray828.png/200px-Gray828.png xref: ncithesaurus:Tibial_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001324 name: common fibular nerve namespace: uberon alt_id: UBERON:FMA_19039-MA_0001169 def: "a nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]. The common peroneal nerve (common fibular nerve; external popliteal nerve; peroneal nerve), about one-half the size of the tibial nerve, is derived from the dorsal branches of the fourth and fifth lumbar and the first and second sacral nerves. It descends obliquely along the lateral side of the popliteal fossa to the head of the fibula, close to the medial margin of the biceps femoris muscle. It lies between the tendon of the biceps femoris and lateral head of the gastrocnemius muscle, winds around the neck of the fibula, between the peronC&us longus and the bone, and divides beneath the muscle into the superficial peroneal nerve (superficial fibular nerve) and deep peroneal nerve (deep fibular nerve). [WP,unvetted]." [MP:0011211, Wikipedia:Common_fibular_nerve] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "common peroneal nerve" EXACT [] synonym: "extrernal peroneal nerve" EXACT [MP:0011211] synonym: "lateral popliteal nerve" EXACT [MP:0011211] synonym: "nervus peroneus communis" EXACT [FMA:19039, FMA:TA] synonym: "peroneal nerve" EXACT [] xref: EFO:0003062 xref: FMA:19039 xref: GAID:853 xref: MA:0001169 xref: MESH:A.08.800.800.720.450.760.640 xref: OpenCyc:Mx4rvwKexZwpEbGdrcN5Y29ycA xref: SCTID:181077007 xref: ncithesaurus:Peroneal_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001325 name: muscle of pelvis namespace: uberon alt_id: UBERON:FMA_19086-MA_0000534 def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," [FMA:19086] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "muscle organ of pelvis" EXACT [OBOL:automatic] synonym: "pelvic muscle" EXACT [FMA:19086] synonym: "pelvis muscle" EXACT [] synonym: "pelvis muscle organ" EXACT [OBOL:automatic] xref: FMA:19086 xref: MA:0000534 is_a: UBERON:0003833 ! abdominal segment muscle is_a: UBERON:0005179 ! pelvis organ [Term] id: UBERON:0001326 name: levator ani namespace: uberon alt_id: UBERON:FMA_19087-MA_0002332 def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [Wikipedia:Levator_ani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:19165 xref: FMA:19087 xref: MA:0002332 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png xref: ncithesaurus:Levator_Ani is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0001327 name: coccygeus namespace: uberon alt_id: UBERON:FMA_19088-MA_0002277 def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [Wikipedia:Coccygeus] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ischiococcygeus" EXACT [] synonym: "musculus ischiococcygeus" EXACT [FMA:19088, FMA:TA] xref: FMA:19088 xref: MA:0002277 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0001328 name: lobe of prostate namespace: uberon alt_id: UBERON:FMA_19570-MA_0001738 comment: Anatomically, the human prostate gland is located between the base of the bladder and the rectum, and it completely surrounds the proximal urethra (Fig. 1A). It is a single alobular structure with central (CZ), peripheral (PZ) and transitional (TZ) zones. In contrast, the mouse prostate is not merged into one compact anatomical structure. It comprises four paired lobes situated circumferentially around the urethra, immediately caudal to the urinary bladderbnamely, anterior (AP), dorsal (DP), lateral (LP), and ventral (VP) prostate (Fig. 1B). Often, the dorsal and the lateral lobes are thought of in combination and referred to as the dorsolateral (DLP) lobe as they share a ductal system. The mouse AP is considered analogous to the human CZ, which is rarely a site of neoplastic transformation in humans. The mouse DLP is considered most similar to the human PZ, which is the zone in which most carcinomas arise (Xue et al. 1997). These analogies, however, are limited as they are based solely on descriptive data and need to be re-evaluated using molecular techniques before the relationship between specific mouse prostate lobes and the human prostate zones is definitively asserted (Abate-Shen & Shen 2000). The mouse VP does not have a human homologue, and the human TZ does not have a murine homologue [PMID:15163300] synonym: "lobe of prostate gland" EXACT [] synonym: "prostate gland lobe" EXACT [] synonym: "prostatic lobe" EXACT [] xref: BTO:0000548 xref: FMA:19570 xref: MA:0001738 xref: SCTID:279692004 xref: ncithesaurus:Prostate_Gland_Lobe is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0001329 name: prostate gland anterior lobe namespace: uberon alt_id: UBERON:FMA_19574-MA_0002422 def: "the prostate lobe that appears as a thin tubular structure, attached to the lesser curvature of the paired seminal vesicles." [MP:0001163] comment: comment: todo - check - see comments from PMID:15163300 synonym: "anterior lobe of prostate" EXACT [FMA:19574] synonym: "anterior lobe of prostate gland" EXACT [] synonym: "commissura prostatae" EXACT [FMA:19574, FMA:TA] synonym: "commissure of prostate" EXACT [] synonym: "isthmus of prostate" EXACT [] synonym: "isthmus of prostate gland" EXACT [] synonym: "isthmus prostatae" EXACT [FMA:19574, FMA:TA] synonym: "prostate gland anterior lobe" EXACT [] synonym: "prostatic isthmus" EXACT [] xref: BTO:0003158 xref: FMA:19574 xref: MA:0002422 xref: SCTID:279693009 is_a: UBERON:0001328 ! lobe of prostate [Term] id: UBERON:0001330 name: pampiniform plexus namespace: uberon alt_id: UBERON:FMA_19607-MA_0001866 def: "The pampiniform plexus is a network of many small veins found in the human male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [Wikipedia:Pampiniform_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pampiniform venous plexus" EXACT [] synonym: "plexus of veins of fascia of prostate" EXACT [] synonym: "plexus venosus pampiniformis" EXACT [FMA:19607, FMA:TA] synonym: "venous plexus of fascia of prostate" EXACT [] synonym: "venous plexus of fascia of prostate gland" EXACT [] xref: FMA:19607 xref: MA:0001866 xref: SCTID:279661001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray1147.png/200px-Gray1147.png is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0001331 name: skin of penis namespace: uberon alt_id: UBERON:FMA_19638-MA_0002727 def: "A zone of skin that is part of a penis [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "penile skin" EXACT [] synonym: "penis skin" EXACT [] synonym: "penis zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of penis" EXACT [OBOL:automatic] xref: FMA:19638 xref: MA:0002727 xref: SCTID:35900000 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0001332 name: prepuce of penis namespace: uberon alt_id: UBERON:FMA_19639-MA_0000407 def: "In male human anatomy, the foreskin is a retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect. It is also described as the prepuce, a technically broader term that also includes the clitoral hood in women, to which the foreskin is embryonically homologous. [WP,unvetted]." [Wikipedia:Foreskin] comment: Note FMA also has FMA:27648 skin of prepuce of penis - how is this different? MA uses the term prepuce for the male prepuce. MA also has penis foreskin subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "foreskin" EXACT [FMA:19639] synonym: "penile prepuce" EXACT [FMA:19639] synonym: "prepuce" BROAD [MA:0000407, Wikipedia:Foreskin] synonym: "prepuce of male" EXACT [EMAPA:18989] synonym: "preputial skin" RELATED [FMA:27648] synonym: "preputium" BROAD [HP:0100587] synonym: "skin of prepuce of penis" NARROW [FMA:27648] xref: BTO:0001113 xref: EFO:0001664 xref: EMAPA:18989 xref: EV:0100109 xref: FMA:19639 xref: MA:0000407 xref: MA:0001744 xref: OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg xref: ncithesaurus:Prepuce is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001331 ! skin of penis relationship: part_of UBERON:0001331 ! skin of penis [Term] id: UBERON:0001333 name: male urethra namespace: uberon alt_id: UBERON:FMA_19668-MA_0002640 def: "In anatomy, the urethra (from Greek N?a=ON.N8ON1 - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Male_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004089 xref: EMAPA:18692 xref: FMA:19668 xref: MA:0002640 xref: SCTID:264085007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: ncithesaurus:Male_Urethra is_a: UBERON:0000057 ! urethra [Term] id: UBERON:0001334 name: female urethra namespace: uberon alt_id: UBERON:FMA_19669-MA_0002637 def: "In anatomy, the urethra (from Greek N?a=ON.N8ON1 - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Female_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004088 xref: EMAPA:28747 xref: FMA:19669 xref: MA:0002637 xref: SCTID:264469008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: ncithesaurus:Female_Urethra is_a: UBERON:0000057 ! urethra [Term] id: UBERON:0001335 name: prostatic urethra namespace: uberon alt_id: UBERON:FMA_19673-MA_0002646 def: "The prostatic urethra, the widest and most dilatable part of the urethra canal, is about 3 cm. long. It runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; the form of the canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion. A transverse section of the canal as it lies in the prostate is horse-shoe-shaped, with the convexity directed forward. [WP,unvetted]." [Wikipedia:Prostatic_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pars prostatica urethrae" RELATED [BTO:0003163] synonym: "prostatic part of urethra" EXACT [] xref: BTO:0003163 xref: EMAPA:30942 xref: FMA:19673 xref: MA:0002646 xref: SCTID:279434009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png xref: ncithesaurus:Prostatic_Portion_of_the_Male_Urethra is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001336 name: membranous urethra namespace: uberon alt_id: UBERON:FMA_19674-MA_0002647 def: "The intermediate part of male urethra (membranous portion) is the shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the canal. It extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm about 2.5 cm. below and behind the pubic symphysis. The hinder part of the urethral bulb lies in apposition with the inferior fascia of the urogenital diaphragm, but its upper portion diverges somewhat from this fascia: the anterior wall of the membranous urethra is thus prolonged for a short distance in front of the urogenital diaphragm; it measures about 2 cm. in length, while the posterior wall which is between the two fasciC& of the diaphragm is only 1.25 cm. long. The membranous portion of the urethra is completely surrounded by the fibers of the Sphincter urethrae membranaceae. In front of it the deep dorsal vein of the penis enters the pelvis between the transverse ligament of the pelvis and the arcuate pubic ligament; on either side near its termination are the bulbourethral glands. [WP,unvetted]." [Wikipedia:Membranous_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intermediate part of urethra" EXACT [] synonym: "intermediate urethra" EXACT [] synonym: "membranous part of urethra" EXACT [] synonym: "pars intermedia urethrae" EXACT [FMA:19674, FMA:TA] synonym: "pars membranacea (urethrae)" EXACT [] xref: FMA:19674 xref: MA:0002647 xref: SCTID:263343009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png xref: ncithesaurus:Membranous_Urethra is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001337 name: spongiose part of urethra namespace: uberon alt_id: UBERON:FMA_19675-MA_0002643 def: "The spongy urethra (cavernous portion of urethra, penile urethra) is the longest part of the male urethra, and is contained in the corpus spongiosum urethraeC&. It is about 15 cm long, and extends from the termination of the membranous portion to the external urethral orifice. Commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward. It is narrow, and of uniform size in the body of the penis, measuring about 6 mm in diameter; it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae. [WP,unvetted]." [Wikipedia:Penile_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pars spongiosa" EXACT [FMA:19675, FMA:TA] synonym: "penile urethra" EXACT [] synonym: "spongiose urethra" EXACT [] synonym: "spongy urethra (male)" EXACT [] xref: BTO:0004089 xref: EMAPA:30944 xref: FMA:19675 xref: MA:0002643 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001338 name: urethral gland namespace: uberon alt_id: UBERON:FMA_19683-MA_0001688 subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gland of urethra" EXACT [OBOL:automatic] synonym: "urethra gland" EXACT [] synonym: "urethra gland (male or female)" EXACT [] xref: FMA:19683 xref: MA:0001688 xref: SCTID:279477005 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001339 name: ischiocavernosus namespace: uberon alt_id: UBERON:FMA_19730-MA_0002330 def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [Wikipedia:Ischiocavernosus] comment: todo - add part_of relationships subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:19730 xref: MA:0002330 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Ischiocavernosus-female.png/200px-Ischiocavernosus-female.png xref: ncithesaurus:Ischiocavernosus is_a: UBERON:0002379 ! perineal muscle [Term] id: UBERON:0001340 name: dorsal artery of penis namespace: uberon alt_id: UBERON:FMA_19795-MA_0001946 def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [Wikipedia:Dorsal_artery_of_penis] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria dorsalis penis" EXACT [BTO:0005088] synonym: "dorsal artery of the penis" RELATED [BTO:0005088] synonym: "dorsal penile artery" EXACT [FMA:19795] synonym: "dorsal penis artery" EXACT [MA:0001946] xref: BTO:0005088 xref: FMA:19795 xref: MA:0001946 xref: SCTID:244294001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png is_a: UBERON:0001637 ! artery is_a: UBERON:0004803 ! penis epithelium relationship: part_of UBERON:0000989 ! penis relationship: part_of UBERON:0008320 ! common penile artery [Term] id: UBERON:0001341 name: lesser sac namespace: uberon alt_id: UBERON:FMA_19800-MA_0000445 def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]." [Wikipedia:Lesser_sac] comment: Note - check EHDAA2 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bursa omentalis" EXACT [FMA:19800, FMA:TA] synonym: "omental bursa" EXACT [] xref: EHDAA2:0001296 xref: EHDAA2:0004554 xref: EHDAA:2335 xref: EMAPA:16889 xref: EMAPA:18458 xref: FMA:19800 xref: MA:0000445 xref: VHOG:0000458 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Peritoneum.svg/200px-Peritoneum.svg.png xref: ncithesaurus:Omental_Bursa is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0001342 name: mesovarium namespace: uberon alt_id: UBERON:FMA_19815-ZFA_0000333 def: "The mesovarium is the portion of the broad ligament of the uterus that covers the ovaries. At first the mesonephros and genital ridge are suspended by a common mesentery, but as the embryo grows the genital ridge gradually becomes pinched off from the mesonephros, with which it is at first continuous, though it still remains connected to the remnant of this body by a fold of peritoneum. In the male this is the mesorchium, and in the female, this is the mesovarium. [WP,unvetted]." [Wikipedia:Mesovarium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010531 xref: EMAPA:17961 xref: FMA:19815 xref: SCTID:279914000 xref: TAO:0000333 xref: ZFA:0000333 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray1111.png/200px-Gray1111.png is_a: UBERON:0002095 ! mesentery is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! female gonad relationship: part_of UBERON:0002095 ! mesentery [Term] id: UBERON:0001343 name: seminiferous tubule of testis namespace: uberon alt_id: UBERON:FMA_19825-XAO_0003088 def: "Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]." [Wikipedia:Seminiferous_tubule] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "seminiferous cord" EXACT [EMAPA:18685] synonym: "seminiferous tubule" EXACT [] synonym: "testis - seminiferous tubule" EXACT [] synonym: "tubuli seminiferi" EXACT [] xref: AAO:0010399 xref: BTO:0001235 xref: EFO:0001404 xref: EMAPA:18685 xref: EMAPA:31476 xref: EV:0100380 xref: FMA:19825 xref: GAID:400 xref: MA:0000412 xref: MAT:0000503 xref: MESH:A.05.360.444.849.700 xref: SCTID:279614002 xref: VHOG:0001363 xref: XAO:0003088 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6a/Gray1145.png/200px-Gray1145.png xref: ncithesaurus:Seminiferous_Cord xref: ncithesaurus:Seminiferous_Tubule is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0000473 ! testis [Term] id: UBERON:0001344 name: epithelium of vagina namespace: uberon alt_id: UBERON:FMA_19978-MA_0001730 def: "the epithelial layer of the vagina." [MP:0001140] comment: FMA: nonkeratinizing stratified squamous epithelium; BTO: Vaginal epithelium is stratified squamous epithelium having a thickness of 15-200 microns; MA has single subclass (squamous) synonym: "epithelial tissue of vagina" EXACT [OBOL:automatic] synonym: "epithelium, vaginal" RELATED [BTO:0000422] synonym: "vagina epithelial tissue" EXACT [OBOL:automatic] synonym: "vagina epithelium" EXACT [] synonym: "vaginal epithelium" EXACT [] xref: BTO:0000422 xref: EMAPA:30991 xref: FMA:19978 xref: MA:0001730 xref: ncithesaurus:Vaginal_Epithelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001345 name: fornix namespace: uberon alt_id: UBERON:FMA_19985-MA_0002747 def: "This class was obsoleted." [Wikipedia:Fornix] is_obsolete: true consider: UBERON:0000051 ! fornix of vagina consider: UBERON:0000052 ! fornix of brain comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms [Term] id: UBERON:0001346 name: vaginal hymen namespace: uberon alt_id: UBERON:FMA_20005-MA_0002465 def: "The hymen, or the vaginal corona, is a fold of mucous membrane that surrounds or partially covers the external vaginal opening. It forms part of the vulva, or external genitalia[WP]." [Wikipedia:Hymen] synonym: "hymen" BROAD [MESH:A.05.360.319.779.479] synonym: "hymen of vagina" EXACT [FMA:20005] synonym: "hymen vaginae" EXACT [] synonym: "vaginal corona" RELATED [Wikipedia:Hymen] xref: FMA:20005 xref: MA:0002465 xref: MESH:A.05.360.319.779.479 xref: SCTID:245473005 xref: ncithesaurus:Hymen is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001347 name: white adipose tissue namespace: uberon alt_id: UBERON:FMA_20117-MA_0000058-MIAA_0000199 def: "Adipose tissue, cells of which contain a single large lipid droplet.[FMA]" [FMA:FMA, Wikipedia:White_adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adipocytus unigutturalis" EXACT [] synonym: "textus adiposus albus" EXACT [] synonym: "unilocular adipose tissue" EXACT [] synonym: "white fat" EXACT [] xref: BTO:0001456 xref: EFO:0000813 xref: FMA:20117 xref: MA:0000058 xref: MAT:0000199 xref: MIAA:0000199 xref: ncithesaurus:White_Adipose_Tissue is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0001348 name: brown adipose tissue namespace: uberon alt_id: UBERON:FMA_20118-MA_0000057-MIAA_0000198 def: "Adipose tissue, cells of which contain multiple small lipid droplets.[FMA]" [FMA:FMA, Wikipedia:Brown_adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adipocytus multigutturalis" EXACT [] synonym: "brown fat" EXACT [] synonym: "multilocular adipose tissue" EXACT [] synonym: "textus adiposus fuscus" EXACT [] xref: BTO:0000156 xref: EFO:0000812 xref: EMAPA:19209 xref: FMA:20118 xref: GAID:921 xref: MA:0000057 xref: MAT:0000198 xref: MESH:A.10.165.114.322 xref: MIAA:0000198 xref: SCTID:15965003 xref: ncithesaurus:Brown_Adipose_Tissue is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0001349 name: vestibule namespace: uberon alt_id: UBERON:FMA_20192-XAO_0000199 def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA]" [FMA:20192, FMA:FMA, Wikipedia:Vestibule_(disambiguation)#Anatomy] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000984 xref: EV:0100366 xref: FMA:20192 is_a: UBERON:0002553 ! anatomical cavity disjoint_from: UBERON:0005236 ! osseus labyrinth vestibule [Term] id: UBERON:0001350 name: coccyx namespace: uberon alt_id: UBERON:FMA_20229-MA_0000696 def: "In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx. The term coccyx comes originally from the Greek language and means 'cuckoo', referring to the curved shape of a cuckoo's beak when viewed from the side. [WP,unvetted]." [Wikipedia:Coccyx] comment: In MA the subclass hierarchy is cocc V is_a caud V is_a tail bone subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "coccygeal vertebrae I-IV" EXACT [FMA:20229] synonym: "coccyx [coccygeal vertebrae i-iv]" EXACT [FMA:20229] synonym: "coccyx [vertebrae coccygeae i-iv]" EXACT [FMA:20229, FMA:TA] synonym: "os coccygis" EXACT [FMA:20229, FMA:TA] synonym: "tailbone" RELATED SENSU [FMA:20229] xref: AAO:0000731 xref: FMA:20229 xref: GAID:239 xref: MESH:A.02.835.232.834.229 xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA xref: SCTID:182028002 xref: galen:Coccyx xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray100.png/200px-Gray100.png xref: ncithesaurus:Coccyx is_a: UBERON:0004247 ! back bone is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001130 ! vertebral column property_value: "has_fused_element" UBERON:0006070 [Term] id: UBERON:0001351 name: lacrimal sac namespace: uberon alt_id: UBERON:FMA_20289-MA_0001298 def: "The lacrimal sac is the upper dilated end of the nasolacrimal duct, and is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla. It connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity. This is mainly for high amounts of tears, in which the lacrimal sac pumps inward and outward driven by the orbicularis muscle during blinking. It is oval in form and measures from 12 to 15 mm. in length; its upper end is closed and rounded; its lower is continued into the nasolacrimal duct. Its superficial surface is covered by a fibrous expansion derived from the medial palpebral ligament, and its deep surface is crossed by the lacrimal part of the Orbicularis oculi, which is attached to the crest on the lacrimal bone. Like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, with surrounding connective tissue. [WP,unvetted]." [Wikipedia:Lacrimal_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:20289 xref: MA:0001298 xref: SCTID:362534009 xref: ncithesaurus:Lacrimal_Sac is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0001352 name: external acoustic meatus namespace: uberon alt_id: UBERON:FMA_20290-MA_0000260 def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus] comment: AO notes: subdivision of head in FMA. Editor note: consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct. Development notes: tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auditory canal" EXACT [] synonym: "auditory meatus" RELATED [EHDAA2:0000460] synonym: "ear canal" EXACT [Wikipedia:Ear_canal] synonym: "external acoustic tube" EXACT [FMA:61734] synonym: "external auditory canal" EXACT [] synonym: "external auditory meatus" RELATED [] synonym: "external auditory tube" EXACT [FMA:61734] xref: EHDAA2:0000460 xref: EHDAA:8975 xref: EMAPA:17588 xref: EV:0100356 xref: FMA:61734 xref: GAID:864 xref: MA:0000260 xref: MESH:A.09.246.272.396 xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA xref: SCTID:181178004 xref: VHOG:0000977 xref: galen:ExternalAuditoryMeatus xref: ncithesaurus:External_Acoustic_Meatus is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001353 name: anal region namespace: uberon alt_id: UBERON:FMA_20347-MA_0000329 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EFO:0000847 xref: EHDAA2:0000122 xref: EHDAA:2931 xref: EMAPA:16831 xref: MA:0000329 xref: MAT:0000042 xref: MIAA:0000042 xref: SCTID:362680001 xref: VHOG:0000395 xref: WBbt:0006919 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray408.png/200px-Gray408.png xref: ncithesaurus:Anal_Region is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0006866 ! terminal part of digestive tract relationship: part_of UBERON:0000160 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! intestine [Term] id: UBERON:0001354 name: inferior epigastric artery namespace: uberon alt_id: UBERON:FMA_20686-MA_0001978 def: "In human anatomy, inferior epigastric artery refers to the artery that arises from the external iliac artery and anastomoses with the superior epigastric artery. Along its course, it is accompanied by a similarly named vein, the inferior epigastric vein. [WP,unvetted]." [Wikipedia:Inferior_epigastric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:18751 xref: FMA:20686 xref: MA:0001978 xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw xref: SCTID:244288009 xref: ncithesaurus:Inferior_Epigastric_Artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001308 ! external iliac artery [Term] id: UBERON:0001355 name: deep femoral artery namespace: uberon alt_id: UBERON:FMA_20741-MA_0002027 def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [Wikipedia:Deep_femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria profunda femoris" EXACT [] synonym: "profunda femoris artery" EXACT [] xref: FMA:20741 xref: MA:0002027 xref: SCTID:181348000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray548.png/200px-Gray548.png xref: ncithesaurus:Deep_Femoral_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001356 name: medial circumflex femoral artery namespace: uberon alt_id: UBERON:FMA_20799-MA_0001996 def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [Wikipedia:Medial_circumflex_femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "medial femoral circumflex artery" EXACT [] xref: FMA:20799 xref: MA:0001996 xref: SCTID:244326008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Circumflex_femoral_arteries.png/200px-Circumflex_femoral_arteries.png is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001357 name: inferior rectal artery namespace: uberon alt_id: UBERON:FMA_20824-MA_0001979 def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [Wikipedia:Inferior_rectal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior hemorrhoidal artery" EXACT [] xref: FMA:20824 xref: MA:0001979 xref: SCTID:244304007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png xref: ncithesaurus:Inferior_Rectal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001358 name: perineal artery namespace: uberon alt_id: UBERON:FMA_20836-MA_0002017 def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinC&i superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinC&i superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinC&i superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [Wikipedia:Perineal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:20836 xref: MA:0002017 xref: SCTID:244303001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png xref: ncithesaurus:Perineal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001359 name: cerebrospinal fluid namespace: uberon alt_id: UBERON:FMA_20935-MA_0002503 def: "Transudate contained in the subarachnoid space.[FMA]" [FMA:FMA, Wikipedia:Cerebrospinal_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CSF" EXACT [] synonym: "cerebral spinal fluid" EXACT [ZFA:0001626] synonym: "spinal fluid" RELATED [BTO:0000237] xref: BTO:0000237 xref: BTO:0001280 xref: EFO:0000329 xref: ENVO:02000029 xref: EV:0100311 xref: FMA:20935 xref: GAID:1181 xref: MA:0002503 xref: MAT:0000499 xref: MESH:A.12.207.268 xref: NIF_GrossAnatomy:birnlex_1798 xref: VHOG:0001278 xref: ZFA:0001626 xref: ncithesaurus:Cerebrospinal_Fluid is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001360 name: deep circumflex iliac vein namespace: uberon alt_id: UBERON:FMA_21182-MA_0002099 def: "The deep circumflex iliac vein is formed by the union of the venC& comitantes of the deep iliac circumflex artery, and joins the external iliac vein about 2 cm. above the inguinal ligament. It also receives small tributary branches from the thoracoepigastric vein [WP,unvetted]." [Wikipedia:Deep_circumflex_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "deep iliac circumflex vein" EXACT [] synonym: "vena circumflexa iliaca profunda" EXACT [] xref: FMA:21182 xref: MA:0002099 xref: SCTID:11653007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001361 name: femoral vein namespace: uberon alt_id: UBERON:FMA_21185-MA_0002118 def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [Wikipedia:Femoral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010237 xref: EMAPA:17876 xref: FMA:21185 xref: GAID:533 xref: MA:0002118 xref: MESH:A.07.231.908.314 xref: OpenCyc:Mx4rwFXTLJwpEbGdrcN5Y29ycA xref: SCTID:362071002 xref: galen:FemoralVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Femoral_triangle.gif/200px-Femoral_triangle.gif xref: ncithesaurus:Femoral_Vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001362 name: perineal vein namespace: uberon alt_id: UBERON:FMA_21246-MA_0002193 comment: This class was created automatically from a combination of ontologies xref: FMA:21246 xref: MA:0002193 xref: SCTID:312507009 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001363 name: great saphenous vein namespace: uberon alt_id: UBERON:FMA_21376-MA_0002216 def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [Wikipedia:Great_saphenous_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "greater saphenous vein" EXACT [] synonym: "large saphenous vein" RELATED [BTO:0003271] synonym: "long saphenous vein" EXACT [] xref: BTO:0003271 xref: FMA:21376 xref: MA:0002216 xref: SCTID:181402008 xref: galen:GreatSaphenousVein xref: galen:GreaterSaphenousVein xref: ncithesaurus:Long_Saphenous_Vein is_a: UBERON:0007318 ! saphenous vein [Term] id: UBERON:0001364 name: circumpennate namespace: uberon alt_id: UBERON:FMA_21431-ZFA_0000271 is_obsolete: true subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "radial" EXACT [] synonym: "radialis" EXACT [FMA:21431, FMA:TA] synonym: "radials" RELATED [] xref: FMA:21431 xref: OpenCyc:Mx4rvVjBSZwpEbGdrcN5Y29ycA xref: TAO:0000271 xref: ZFA:0000271 [Term] id: UBERON:0001365 name: sacro-iliac joint namespace: uberon alt_id: UBERON:FMA_21440-MA_0001506 def: "." [Wikipedia:Sacro-iliac_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "articulatio sacro-iliaca" EXACT [] synonym: "sacroiliac joint" EXACT [] xref: EMAPA:19300 xref: FMA:21440 xref: GAID:268 xref: MA:0001506 xref: MESH:A.02.835.583.707 xref: SCTID:182199004 xref: ncithesaurus:Sacroiliac_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0008114 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! joint of girdle [Term] id: UBERON:0001366 name: parietal peritoneum namespace: uberon alt_id: UBERON:0004459 alt_id: UBERON:FMA_21451-ZFA_0005131 def: "The peritoneum that lines the walls of the peritoneal cavity." [Wikipedia:Parietal_peritoneum, ZFIN:curator] comment: fix coordinated with ZFA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "peritoneal cavity lining" EXACT [MA:0000449] xref: AAO:0010816 xref: FMA:21451 xref: MA:0000449 xref: SCTID:362700006 xref: TAO:0005131 xref: VHOG:0001527 xref: ZFA:0005131 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0001367 name: external anal sphincter namespace: uberon alt_id: UBERON:FMA_21930-MA_0001531 def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:External_anal_sphincter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "external sphincter ani" EXACT [] synonym: "sphincter ani externus" RELATED [] xref: EMAPA:18265 xref: FMA:21930 xref: MA:0001531 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif xref: ncithesaurus:External_Anal_Sphincter is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0004916 ! anal sphincter is_a: UBERON:0004832 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! anal region skeletal muscle relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0001368 name: obturator externus namespace: uberon alt_id: UBERON:FMA_22299-MA_0002347 def: "The obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,unvetted]." [Wikipedia:Obturator_externus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "external obturator" EXACT [] xref: FMA:22299 xref: MA:0002347 xref: SCTID:245026009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Posterior_Hip_Muscles_1.PNG/200px-Posterior_Hip_Muscles_1.PNG is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001369 name: iliacus namespace: uberon alt_id: UBERON:FMA_22310-MA_0002318 def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [Wikipedia:Iliacus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior muscle of pelvic girdle" EXACT [] synonym: "iliacus muscle" RELATED [Wikipedia:Iliacus_muscle] xref: EMAPA:19164 xref: FMA:22310 xref: MA:0002318 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: ncithesaurus:Iliacus is_a: UBERON:0001497 ! muscle of pelvic girdle [Term] id: UBERON:0001370 name: gluteus maximus namespace: uberon alt_id: UBERON:FMA_22314-MA_0002309 def: "The gluteus maximus (or glutC&us maximus) is the largest and most superficial of the three gluteal muscles. It makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. [WP,unvetted]." [Wikipedia:Gluteus_maximus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "glutaeus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle] synonym: "gluteus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle] synonym: "gluteus superficialis" RELATED [] synonym: "m.gluteus maximus" EXACT [] xref: EMAPA:18527 xref: FMA:22314 xref: MA:0002309 xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG xref: ncithesaurus:Gluteus_Maximus is_a: UBERON:0002000 ! gluteal muscle relationship: part_of UBERON:0004470 ! musculature of pelvic girdle [Term] id: UBERON:0001371 name: gluteus medius namespace: uberon alt_id: UBERON:FMA_22315-MA_0002310 def: "The gluteus medius (or glutC&us medius), one of the three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [Wikipedia:Gluteus_medius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gluteus medius muscle" RELATED [Wikipedia:Gluteus_medius_muscle] synonym: "musculus gluteus medius" RELATED [Wikipedia:Gluteus_medius_muscle] xref: EMAPA:19163 xref: FMA:22315 xref: MA:0002310 xref: galen:GluteusMedius xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG xref: ncithesaurus:Gluteus_Medius is_a: UBERON:0002000 ! gluteal muscle relationship: part_of UBERON:0004470 ! musculature of pelvic girdle [Term] id: UBERON:0001372 name: psoas minor namespace: uberon alt_id: UBERON:FMA_22350-MA_0002359 def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. It is absent in 40% of individuals. [WP,unvetted]." [Wikipedia:Psoas_minor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "psoas minor muscle" EXACT [] xref: BTO:0001878 xref: EMAPA:18170 xref: FMA:22350 xref: MA:0002359 xref: SCTID:244954007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray430.png/200px-Gray430.png xref: ncithesaurus:Psoas_Minor is_a: UBERON:0008450 ! psoas [Term] id: UBERON:0001373 name: sartorius namespace: uberon alt_id: UBERON:FMA_22353-MA_0002368 def: "." [Wikipedia:Sartorius] comment: Taxon notes (via VHOG): \"The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius.\" Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.391 [VHOG:0001192] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sartorius muscle" EXACT [] xref: BTO:0001215 xref: EHDAA2:0001776 xref: EHDAA:10583 xref: FMA:22353 xref: MA:0002368 xref: VHOG:0001192 xref: galen:Sartorius xref: ncithesaurus:Sartorius_Muscle is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001374 name: biceps femoris namespace: uberon alt_id: UBERON:FMA_22356-MA_0002270 def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "biceps femoris muscle" EXACT [BTO:0003418] xref: BTO:0003418 xref: EFO:0001418 xref: FMA:22356 xref: MA:0002270 xref: SCTID:181672002 xref: galen:BicepsFemoris xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG xref: ncithesaurus:Biceps_Femoris is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004252 ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0001375 name: semitendinosus namespace: uberon alt_id: UBERON:FMA_22357-MA_0002375 def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [Wikipedia:Semitendinosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus semitendinosus" RELATED [BTO:0001236] synonym: "semitendinosus muscle" EXACT [] xref: BTO:0001236 xref: FMA:22357 xref: MA:0002375 xref: SCTID:181685004 xref: galen:Semitendinosus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Semitendinosus_muscle.PNG/200px-Semitendinosus_muscle.PNG xref: ncithesaurus:Semitendinosus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001376 name: tensor fasciae latae namespace: uberon alt_id: UBERON:FMA_22423-MA_0002391 def: "The tensor fasciae latae or tensor fasciC& latC& is a muscle of the thigh. [WP,unvetted]." [Wikipedia:Tensor_fasciae_latae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus tensor fasciae latae" EXACT [FMA:22423, FMA:TA] synonym: "tensor fasciae lata" EXACT [] synonym: "tensor of fascia lata" EXACT [] xref: FMA:22423 xref: MA:0002391 xref: SCTID:181671009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: ncithesaurus:Tensor_Fasciae_Lata is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001377 name: quadriceps femoris namespace: uberon alt_id: UBERON:FMA_22428-MA_0002363 def: "The quadriceps femoris, also called simply the quadriceps, quadriceps extensor, quads, is a large muscle group that includes the four prevailing muscles on the front of the thigh. It is the great extensor muscle of the knee, forming a large fleshy mass which covers the front and sides of the femur. It is the strongest and leanest muscle in the human body. It is subdivided into four separate portions or 'heads', which have received distinctive names: Rectus femoris occupies the middle of the thigh, covering most of the other three quadriceps muscles. It originates on the ilium. It is named from its straight course. The other three lie deep to rectus femoris and originate from the body of the femur, which they cover from the trochanters to the condyles: Vastus lateralis is on the lateral side of the femur (i.e. on the outer side of the thigh). Vastus medialis is on the medial side of the femur (i.e. on the inner part thigh). Vastus intermedius lies between vastus lateralis and vastus medialis on the front of the femur (i.e. on the top or front of the thigh). All four parts of the quadriceps muscle attach to the patella (knee cap) via the quadriceps tendon. The quadriceps is also involved in Lombard's Paradox. The proper plural form of the adjective quadriceps is quadricipes, a form not in general use; instead, quadriceps is used in both singular and plural (i.e. , when referring to both legs). The form quadricep [sic], though common even in professional contexts, is incorrect. The error may derive from a mistaken belief that quadriceps is a plural noun (rather than an adjective in the singular), since English typically forms its plurals with the addition of the letter s to the end of a word stem. [WP,unvetted]." [Wikipedia:Quadriceps_femoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus quadriceps femoris" RELATED [BTO:0001149] synonym: "quadricep muscle" RELATED [BTO:0001149] synonym: "quadriceps" EXACT [] synonym: "quadriceps muscle" RELATED [BTO:0001149] synonym: "quadriceps muscle of the thigh" RELATED [BTO:0001149] synonym: "quadriceps muscle of thigh" RELATED [BTO:0001149] xref: BTO:0001149 xref: EFO:0001938 xref: EHDAA2:0001583 xref: EHDAA:8299 xref: EMAPA:19073 xref: EMAPA:19146 xref: FMA:22428 xref: MA:0002363 xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA xref: VHOG:0000828 xref: galen:QuadricepsFemoris xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: ncithesaurus:Quadriceps_Muscle_of_the_Thigh is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001378 name: rectus femoris namespace: uberon alt_id: UBERON:FMA_22430-MA_0002365 def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [Wikipedia:Rectus_femoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus rectos femoris" EXACT [] xref: BTO:0001564 xref: FMA:22430 xref: MA:0002365 xref: SCTID:181679006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Rectus_femoris.png/200px-Rectus_femoris.png xref: ncithesaurus:Rectus_Femoris is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001379 name: vastus lateralis namespace: uberon alt_id: UBERON:FMA_22431-MA_0002402 def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the GlutC&us maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [Wikipedia:Vastus_lateralis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateralis" BROAD [] synonym: "vastus externus" RELATED [BTO:0001563] xref: BTO:0001563 xref: EFO:0001937 xref: FMA:22431 xref: MA:0002402 xref: galen:VastusLateralis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: ncithesaurus:Vastus_Lateralis is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001380 name: vastus medialis namespace: uberon alt_id: UBERON:FMA_22432-MA_0002403 def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [Wikipedia:Vastus_medialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "medialis" BROAD [] xref: BTO:0004913 xref: FMA:22432 xref: MA:0002403 xref: galen:VastusMedialis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Vastus_medialis.png/200px-Vastus_medialis.png is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001381 name: semimembranosus namespace: uberon alt_id: UBERON:FMA_22438-MA_0002371 def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [Wikipedia:Semimembranosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus semimembranosus" RELATED [BTO:0003177] xref: BTO:0003177 xref: FMA:22438 xref: MA:0002371 xref: galen:Semimembranosus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Semimembranosus_muscle.PNG/200px-Semimembranosus_muscle.PNG xref: ncithesaurus:Semimembranosus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001382 name: pectineus namespace: uberon alt_id: UBERON:FMA_22440-MA_0002353 def: "The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,unvetted]." [Wikipedia:Pectineus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22440 xref: MA:0002353 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: ncithesaurus:Pectineus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001383 name: muscle of leg namespace: uberon alt_id: UBERON:FMA_22471-MA_0000672 def: "." [Wikipedia:Leg_muscle] comment: Terminology notes: see notes on UBERON:0000978 for possible confusion over the term 'leg'. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "leg muscle" EXACT [] synonym: "leg muscle organ" EXACT [OBOL:automatic] synonym: "muscle of hindlimb zeugopod or stylopod" EXACT [OBOL:automatic, UBERON:cjm] synonym: "muscle of upper/lower leg" EXACT [] synonym: "muscle organ of leg" EXACT [OBOL:automatic] xref: BTO:0000722 xref: MA:0000672 is_a: UBERON:0003663 ! hindlimb muscle [Term] id: UBERON:0001384 name: primary motor cortex namespace: uberon alt_id: UBERON:FMA_224854-MA_0000907 def: "a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule." [Wikipedia:Primary_motor_cortex] comment: _:comment___:_:@___:_:source__MA-modified___:.__TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "motor cortex" EXACT [FMA:224854] synonym: "prefrontal gyrus" RELATED [Wikipedia:Primary_motor_cortex] xref: BM:Tel-Cx-M1 xref: BTO:0004348 xref: EFO:0002472 xref: FMA:224854 xref: MA:0000907 xref: MESH:A.08.186.211.730.885.213.270.548 xref: SCTID:11931008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0001870 ! frontal cortex relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0001872 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! parietal lobe [Term] id: UBERON:0001385 name: tibialis anterior namespace: uberon alt_id: UBERON:FMA_22532-MA_0002395 def: "In human anatomy, the tibialis anterior is a muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]." [Wikipedia:Tibialis_anterior, http://evolutionwiki.org/wiki/M._tibialis_cranialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior tibialis" RELATED [BTO:0001382] synonym: "ibialis anticus" RELATED [BTO:0001382] synonym: "tibialis anterior muscle" RELATED [BTO:0001382] synonym: "tibialis cranialis" EXACT [MA:0002395] synonym: "tibilais cranialis" EXACT [] xref: BTO:0001382 xref: EFO:0001385 xref: FMA:22532 xref: MA:0002395 xref: SCTID:181696007 xref: galen:TibialisAnterior xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png xref: ncithesaurus:Tibialis_Cranialis is_a: UBERON:0008230 ! tibialis [Term] id: UBERON:0001386 name: extensor digitorum longus namespace: uberon alt_id: UBERON:FMA_22534-MA_0002295 def: "The Extensor digitorum longus is a pennate muscle, situated at the lateral part of the front of the leg. [WP,unvetted]." [Wikipedia:Extensor_digitorum_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "extensor digitorum longus muscle" RELATED [BTO:0000436] xref: BTO:0000436 xref: FMA:22534 xref: MA:0002295 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png xref: ncithesaurus:Extensor_Digitorum_Longus is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0001383 ! muscle of leg relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001387 name: fibularis longus namespace: uberon alt_id: UBERON:FMA_22539-MA_0002356 def: "In human anatomy, the peroneus longus (also known as fibularis longus) is a superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [Wikipedia:Fibularis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus peroneus longus" EXACT [FMA:22539, FMA:TA] synonym: "peroneus longus" EXACT [] synonym: "peroneus longus muscle" EXACT [] xref: FMA:22539 xref: MA:0002356 xref: SCTID:361825008 xref: galen:PeroneusLongus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png xref: ncithesaurus:Peroneus_Longus is_a: UBERON:0009132 ! peroneus [Term] id: UBERON:0001388 name: gastrocnemius namespace: uberon alt_id: UBERON:FMA_22541-MA_0002306 def: "In humans, the gastrocnemius muscle is a very powerful superficial muscle that is in the back part of the lower leg and also called the calf. It runs from its two heads just above the knee to the heel, and is involved in standing, walking, running and jumping. Along with the soleus muscle it forms the calf muscle. [WP,unvetted]." [Wikipedia:Gastrocnemius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gastrocnemius muscle" EXACT [BTO:0000506] synonym: "m.gastrocnemius" EXACT [] synonym: "musculus gastrocnemius" RELATED [Wikipedia:Gastrocnemius_muscle] xref: BTO:0000506 xref: EFO:0001413 xref: EHDAA2:0000701 xref: EHDAA:8293 xref: FMA:22541 xref: MA:0002306 xref: SCTID:181700004 xref: VHOG:0001193 xref: galen:Gastrocnemius xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8e/Gastrocnemius.png/200px-Gastrocnemius.png xref: ncithesaurus:Gastrocnemius_Muscle is_a: UBERON:0001383 ! muscle of leg is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: part_of UBERON:0001665 ! triceps surae relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0001389 name: soleus namespace: uberon alt_id: UBERON:FMA_22542-MA_0002424 def: "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "soleus muscle" RELATED [BTO:0001265] xref: BTO:0001265 xref: EFO:0001946 xref: FMA:22542 xref: MA:0002424 xref: SCTID:181702007 xref: galen:Soleus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: ncithesaurus:Soleus is_a: UBERON:0001383 ! muscle of leg is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: part_of UBERON:0001665 ! triceps surae [Term] id: UBERON:0001390 name: sural artery namespace: uberon alt_id: UBERON:FMA_22570-MA_0002058 def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [Wikipedia:Sural_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22570 xref: MA:0002058 xref: SCTID:302693002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Gray551.png/200px-Gray551.png xref: ncithesaurus:External_Sural_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001391 name: popliteus namespace: uberon alt_id: UBERON:FMA_22590-MA_0002554 def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [Wikipedia:Popliteus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "m.popliteus" EXACT [] synonym: "popliteal muscle" EXACT [] xref: FMA:22590 xref: MA:0002554 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray439.png/200px-Gray439.png is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001392 name: flexor hallucis longus namespace: uberon alt_id: UBERON:FMA_22593-MA_0002301 def: "The Flexor hallucis longus muscle (FHL) is a muscle of the leg. It is one of the deep muscles of the posterior compartment of the leg. The other deep muscles of the leg are flexor digitorum longus and tibialis posterior. FHL is the largest and most powerful of these deep muscles. The Flexor hallucis longus is situated on the fibular side of the leg. It arises from the inferior two-thirds of the posterior surface of the body of the fibula, with the exception of 2.5 cm. at its lowest part; from the lower part of the interosseous membrane; from an intermuscular septum between it and the PeronC&i, laterally, and from the fascia covering the Tibialis posterior, medially. The fibers pass obliquely downward and backward, and end in a tendon which occupies nearly the whole length of the posterior surface of the muscle. This tendon lies in a groove which crosses the posterior surface of the lower end of the tibia, the posterior surface of the talus, and the under surface of the sustentaculum tali of the calcaneus; in the sole of the foot it runs forward between the two heads of the Flexor hallucis brevis, and is inserted into the base of the last phalanx of the great toe. The grooves on the talus and calcaneus, which contain the tendon of the muscle, are converted by tendinous fibers into distinct canals, lined by a mucous sheath. As the tendon passes forward in the sole of the foot, it is situated above, and crosses from the lateral to the medial side of the tendon of the Flexor digitorum longus, to which it is connected by a fibrous slip. [WP,unvetted]." [Wikipedia:Flexor_hallucis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22593 xref: MA:0002301 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png xref: ncithesaurus:Flexor_Hallucis_Longus is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0001383 ! muscle of leg relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001393 name: auditory cortex namespace: uberon alt_id: UBERON:FMA_226221-MA_0000942 def: "The primary auditory cortex is the region of the brain that is responsible for processing of auditory information. [WP,unvetted]." [Wikipedia:Auditory_cortex] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "A1 (primary auditory cortex)" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "anterior transverse temporal area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "auditory cortex" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "brodmann area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "brodmann area 41 & 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "brodmann area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "posterior transverse temporal area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "primary auditory cortex" RELATED [Wikipedia:Auditory_cortex] synonym: "temporal auditory neocortex" RELATED [GEO:GSE13344] xref: BTO:0004343 xref: FMA:226221 xref: GAID:682 xref: MA:0000942 xref: MESH:A.08.186.211.730.885.213.863.297 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Brodmann_41_42.png/200px-Brodmann_41_42.png xref: ncithesaurus:Auditory_Cortex is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0001394 name: axillary artery namespace: uberon alt_id: UBERON:FMA_22654-MA_0002573 def: "In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery. [WP,unvetted]." [Wikipedia:Axillary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "axillary part of subclavian artery" EXACT [FMA:22654] synonym: "axillary part of trunk of subclavian artery" EXACT [] xref: EMAPA:18749 xref: FMA:22654 xref: GAID:473 xref: MA:0002573 xref: MESH:A.07.231.114.085 xref: OpenCyc:Mx4rwRh-vZwpEbGdrcN5Y29ycA xref: SCTID:181321001 xref: galen:AxillaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/88/Axillary_limits.PNG/200px-Axillary_limits.PNG xref: ncithesaurus:Axillary_Artery is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0001637 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! artery relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001395 name: thoraco-acromial artery namespace: uberon alt_id: UBERON:FMA_22671-MA_0002064 def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [Wikipedia:Thoraco-acromial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "acromiothoracic artery" EXACT [] synonym: "thoracoacromial artery" EXACT [] xref: FMA:22671 xref: MA:0002064 xref: SCTID:244315002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG xref: ncithesaurus:Acromial_Thoracic_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003233 ! epithelium of shoulder is_a: UBERON:0003515 ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001396 name: lateral thoracic artery namespace: uberon alt_id: UBERON:FMA_22674-MA_0001989 def: "In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the Serratus anterior muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [Wikipedia:Lateral_thoracic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "external mammary artery" EXACT [] xref: FMA:22674 xref: MA:0001989 xref: SCTID:206135006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG xref: ncithesaurus:Lateral_Thoracic_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003233 ! epithelium of shoulder is_a: UBERON:0003515 ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001397 name: subscapular artery namespace: uberon alt_id: UBERON:FMA_22677-MA_0002050 def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [Wikipedia:Subscapular_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22677 xref: MA:0002050 xref: SCTID:244311006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG xref: ncithesaurus:Subscapular_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001398 name: brachial artery namespace: uberon alt_id: UBERON:FMA_22689-MA_0001921 def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [Wikipedia:Brachial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brachial part of trunk of subclavian artery" EXACT [] xref: AAO:0010504 xref: FMA:22689 xref: GAID:475 xref: MA:0001921 xref: MESH:A.07.231.114.139 xref: OpenCyc:Mx4rwM-i5JwpEbGdrcN5Y29ycA xref: SCTID:181322008 xref: galen:BrachialArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray525.png/200px-Gray525.png xref: ncithesaurus:Brachial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001399 name: deep brachial artery namespace: uberon alt_id: UBERON:FMA_22695-MA_0002026 def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [Wikipedia:Deep_brachial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria profunda brachii" EXACT [FMA:22695, FMA:TA] synonym: "profunda brachii artery" EXACT [] xref: FMA:22695 xref: MA:0002026 xref: SCTID:41065002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray526.png/200px-Gray526.png is_a: UBERON:0001637 ! artery is_a: UBERON:0003507 ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001400 name: iliocostalis thoracis namespace: uberon alt_id: UBERON:FMA_22703-MA_0002320 def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22703 xref: MA:0002320 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png is_a: UBERON:0002251 ! iliocostalis [Term] id: UBERON:0001401 name: longissimus thoracis namespace: uberon alt_id: UBERON:FMA_22709-MA_0002339 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "longissimus dorsi" RELATED [BTO:0001651] synonym: "musculus longissimus thoracis" RELATED [BTO:0001651] xref: BTO:0001651 xref: FMA:22709 xref: MA:0002339 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png xref: ncithesaurus:Longissimus_Thoracis is_a: UBERON:0000392 ! longissimus [Term] id: UBERON:0001402 name: longissimus cervicis namespace: uberon alt_id: UBERON:FMA_22711-MA_0002337 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_cervicis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus longissimus cervicis" RELATED [BTO:0001650] xref: BTO:0001650 xref: FMA:22711 xref: MA:0002337 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png xref: ncithesaurus:Longissimus_Cervicis is_a: UBERON:0000392 ! longissimus [Term] id: UBERON:0001403 name: longissimus capitis namespace: uberon alt_id: UBERON:FMA_22714-MA_0002336 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus longissimus capitis" RELATED [BTO:0001649] synonym: "trachelomastoid muscle" RELATED [BTO:0001649] xref: BTO:0001649 xref: FMA:22714 xref: MA:0002336 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png xref: ncithesaurus:Longissimus_Capitis is_a: UBERON:0000392 ! longissimus [Term] id: UBERON:0001404 name: radial artery namespace: uberon alt_id: UBERON:FMA_22730-MA_0002034 def: "In human anatomy, the radial artery is the main blood vessel, with oxygenated blood, of the lateral aspect of the forearm. [WP,unvetted]." [Wikipedia:Radial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22730 xref: GAID:506 xref: MA:0002034 xref: MESH:A.07.231.114.740 xref: OpenCyc:Mx4rvxzeR5wpEbGdrcN5Y29ycA xref: SCTID:181332001 xref: galen:RadialArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png xref: ncithesaurus:Radial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001405 name: spinalis thoracis namespace: uberon alt_id: UBERON:FMA_22765-MA_0002381 def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [Wikipedia:Spinalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22765 xref: MA:0002381 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Spinalis.png/200px-Spinalis.png xref: ncithesaurus:Spinalis_Thoracis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001406 name: ulnar artery namespace: uberon alt_id: UBERON:FMA_22796-MA_0002069 def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [Wikipedia:Ulnar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22796 xref: GAID:515 xref: MA:0002069 xref: MESH:A.07.231.114.920 xref: OpenCyc:Mx4rwAF2PJwpEbGdrcN5Y29ycA xref: SCTID:181333006 xref: galen:UlnarArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png xref: ncithesaurus:Ulnar_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001407 name: semispinalis thoracis namespace: uberon alt_id: UBERON:FMA_22828-MA_0002374 def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebrC&, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [Wikipedia:Semispinalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22828 xref: MA:0002374 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Semispinalis.png/200px-Semispinalis.png xref: ncithesaurus:Semispinalis_Thoracis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001408 name: semispinalis cervicis namespace: uberon alt_id: UBERON:FMA_22829-MA_0002373 def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebrC&, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [Wikipedia:Semispinalis_cervicis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22829 xref: MA:0002373 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png xref: ncithesaurus:Semispinalis_Cervicis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001409 name: semispinalis capitis namespace: uberon alt_id: UBERON:FMA_22830-MA_0002372 def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebrC&, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [Wikipedia:Semispinalis_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22830 xref: MA:0002372 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png xref: ncithesaurus:Semispinalis_Capitis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001410 name: common palmar digital artery namespace: uberon alt_id: UBERON:FMA_22852-MA_0001957 def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [Wikipedia:Common_palmar_digital_artery] comment: the MA term, even though plural, represents the singular, as it is an isa child of artery subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "common palmar digital arteries" EXACT [] xref: FMA:22852 xref: MA:0001957 xref: SCTID:38396009 xref: ncithesaurus:Common_Palmar_Digital_Artery is_a: UBERON:0006141 ! palmar digital artery [Term] id: UBERON:0001411 name: basilic vein namespace: uberon alt_id: UBERON:FMA_22908-MA_0002086 def: "In human anatomy, the basilic vein is a large superficial vein of the upper limb that helps drain parts of hand and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the hand, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. [WP,unvetted]." [Wikipedia:Basilic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "basilic vein of forearm" EXACT [] synonym: "vena basilica antebrachii" EXACT [FMA:22908, FMA:TA] xref: FMA:22908 xref: MA:0002086 xref: OpenCyc:Mx4rvwrxEpwpEbGdrcN5Y29ycA xref: SCTID:181393008 xref: galen:BasilicVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png xref: ncithesaurus:Basilic_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001412 name: common palmar digital vein namespace: uberon alt_id: UBERON:FMA_22923-MA_0002121 comment: Some sources distinguish between the \"proper palmar digital veins\", which are more distal, and the \"common palmar digital veins\", which are more proximal. synonym: "proximal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins] xref: FMA:22923 xref: MA:0002121 is_a: UBERON:0004563 ! forelimb digital vein [Term] id: UBERON:0001413 name: brachial vein namespace: uberon alt_id: UBERON:FMA_22934-MA_0002087 def: "In human anatomy, the brachial veins are venae comitantes of the brachial artery in the arm proper. Because they are deep to muscle, they are considered deep veins. Their course is that of the brachial artery (in reverse): they begin where radial veins and ulnar veins join (corresponding to the bifurcation of the brachial artery). They end at the inferior border of the teres major muscle. At this point, the brachial veins join the basilic vein to form the axillary vein. The brachial veins also have small tributaries that drain the muscles of the upper arm, such as biceps brachii muscle and triceps brachii muscle. [WP,unvetted]." [Wikipedia:Brachial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010512 xref: FMA:22934 xref: MA:0002087 xref: OpenCyc:Mx4rwS3In5wpEbGdrcN5Y29ycA xref: SCTID:181390006 xref: galen:BrachialVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png xref: ncithesaurus:Brachial_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001414 name: median cubital vein namespace: uberon alt_id: UBERON:FMA_22963-MA_0002176 def: "In human anatomy, the median cubital vein (or median basilic vein) a superficial vein of the upper limb. It connects the basilic and cephalic vein and is often used for venipuncture (taking blood). It lies in the cubital fossa superficial to the bicipital aponeurosis. There exists a fair amount of variation of the median cubital vein. More commonly the vein forms an H-pattern with the cephalic and basilic veins making up the sides. Other forms include an M-pattern, where the vein branches to the cephalic and basilic veins. [WP,unvetted]." [Wikipedia:Median_cubital_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:22963 xref: MA:0002176 xref: OpenCyc:Mx4rvzQSYZwpEbGdrcN5Y29ycA xref: SCTID:181392003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001415 name: skin of pelvis namespace: uberon alt_id: UBERON:FMA_22984-MA_0000546 def: "A zone of skin that is part of a pelvis [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "pelvic skin" EXACT [] synonym: "pelvis skin" EXACT [] synonym: "pelvis zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of pelvis" EXACT [OBOL:automatic] xref: FMA:22984 xref: MA:0000546 xref: SCTID:181517009 is_a: UBERON:0001085 ! skin of trunk is_a: UBERON:0003836 ! abdominal segment skin relationship: part_of UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0001416 name: skin of abdomen namespace: uberon alt_id: UBERON:FMA_22988-MA_0000523 def: "A zone of skin that is part of an abdomen [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "abdomen skin" EXACT [] synonym: "abdomen zone of skin" EXACT [OBOL:automatic] synonym: "abdominal skin" EXACT [] synonym: "skin of abdomen proper" EXACT [FMA:22988] synonym: "zone of skin of abdomen" EXACT [OBOL:automatic] xref: EFO:0000214 xref: FMA:22988 xref: FMA:23000 xref: MA:0000523 xref: SCTID:361707007 xref: ncithesaurus:Abdominal_Skin is_a: UBERON:0003836 ! abdominal segment skin relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0001417 name: skin of neck namespace: uberon alt_id: UBERON:FMA_23021-MA_0000590 def: "A zone of skin that is part of a neck [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "neck (volume) zone of skin" EXACT [OBOL:automatic] synonym: "neck skin" EXACT [] synonym: "neck zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of neck" EXACT [OBOL:automatic] synonym: "zone of skin of neck (volume)" EXACT [OBOL:automatic] xref: FMA:23021 xref: FMA:23022 xref: MA:0000590 xref: SCTID:361705004 xref: ncithesaurus:Neck_Skin is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0001418 name: skin of thorax namespace: uberon alt_id: UBERON:FMA_23028-MA_0000564 def: "A zone of skin that is part of a thorax [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "thoracic skin" EXACT [] synonym: "thorax skin" EXACT [] synonym: "thorax zone of skin" EXACT [OBOL:automatic] synonym: "upper body skin" RELATED [] synonym: "zone of skin of thorax" EXACT [OBOL:automatic] xref: FMA:23028 xref: FMA:23029 xref: MA:0000564 xref: SCTID:281723000 is_a: UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0001419 name: skin of limb namespace: uberon alt_id: UBERON:FMA_23100-MA_0000694 def: "A zone of skin that is part of a limb [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "limb skin" EXACT [] synonym: "limb zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of limb" EXACT [OBOL:automatic] xref: FMA:23100 xref: MA:0000694 xref: SCTID:314403009 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0001420 name: subscapular vein namespace: uberon alt_id: UBERON:FMA_23113-MA_0002224 comment: This class was created automatically from a combination of ontologies xref: FMA:23113 xref: MA:0002224 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001421 name: pectoral girdle namespace: uberon alt_id: UBERON:FMA_23217-MA_0000292-MIAA_0000181-XAO_0003063-ZFA_0000407 def: "Subdivision of limb or fin consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Subdivision of free upper limb, which is the proximal segment of an upper limb and links the free upper limb to the trunk; it is demarcated by the plane of the surface of the glenoid fossa from the free upper limb; together with the free upper limb, it constitutes the upper limb. Examples: There are only two instances, right and left pectoral girdles[FMA]." [FMA:23217, Wikipedia:Pectoral_girdle] comment: Note that this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). TODO - distinguish free limb and limb subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cingulum membri superioris" EXACT [FMA:23217, FMA:TA] synonym: "girdle - pectoral" EXACT [] synonym: "pectoral girdle region" EXACT [] xref: FMA:23217 is_a: UBERON:0007823 ! limb/fin girdle [Term] id: UBERON:0001422 name: facial lymphatic vessel namespace: uberon alt_id: UBERON:FMA_233946-ZFA_0005108 def: "A lymphatic vessel that is part of a face [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "FL" RELATED [] synonym: "buccal lymphatic vessel" EXACT [] synonym: "face lymph vessel" EXACT [OBOL:automatic] synonym: "face lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel of face" EXACT [OBOL:automatic] synonym: "lymphatic vessel of face" EXACT [OBOL:automatic] xref: FMA:233946 xref: TAO:0005108 xref: ZFA:0005108 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001423 name: radius bone namespace: uberon alt_id: UBERON:FMA_23463-MA_0001357 def: "The radius is one of the two large bones of the forearm, the other being the ulna. It extends from the lateral side of the elbow to the thumb side of the wrist and runs parallel to the ulna, which exceeds it in length and size. It is a long bone, prism-shaped and slightly curved longitudinally. The radius articulates with the capitulum of the humerus, the radial notch and the head of the ulna. The corresponding bone in the lower leg is the tibia.." [Wikipedia:Radius_(bone)] comment: In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "radius" EXACT [MA:0001357] xref: AAO:0000788 xref: EMAPA:18466 xref: EMAPA:19103 xref: FMA:23463 xref: GAID:185 xref: MA:0001357 xref: MESH:A.02.835.232.087.702 xref: OpenCyc:Mx4rwUsDcZwpEbGdrcN5Y29ycA xref: SCTID:181940002 xref: galen:Radius xref: ncithesaurus:Radius_Bone is_a: UBERON:0002495 ! long bone is_a: UBERON:0003466 ! lower arm bone is_a: UBERON:0003607 ! forelimb long bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0001424 name: ulna namespace: uberon alt_id: UBERON:FMA_23466-MA_0001358 def: "The ulna is a long bone, prismatic in form. In anatomical position the ulna is placed at the medial side of the forearm closest to the body, parallel with the radius on both arms. [WP,unvetted]." [Wikipedia:Ulna] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000789 xref: EMAPA:18467 xref: EMAPA:19104 xref: FMA:23466 xref: GAID:188 xref: MA:0001358 xref: MESH:A.02.835.232.087.911 xref: OpenCyc:Mx4rwPtIM5wpEbGdrcN5Y29ycA xref: SCTID:181948009 xref: galen:Ulna xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg xref: ncithesaurus:Ulna is_a: UBERON:0002495 ! long bone is_a: UBERON:0003466 ! lower arm bone is_a: UBERON:0003607 ! forelimb long bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0001425 name: pectoral lymphatic vessel namespace: uberon alt_id: UBERON:FMA_234865-ZFA_0005107 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "PL" RELATED [] xref: FMA:234865 xref: TAO:0005107 xref: ZFA:0005107 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001426 name: jugular lymphatic vessel namespace: uberon alt_id: UBERON:FMA_234908-ZFA_0005109 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "JL" RELATED [] xref: FMA:234908 xref: TAO:0005109 xref: ZFA:0005109 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001427 name: scaphoid namespace: uberon alt_id: UBERON:FMA_23709-MA_0002555 def: "The scaphoid Bone is situated at the radial (radius bone) side of the carpus, or laterally between the hand and the forearm in standard medical posture (thumbs pointing outwards). The scaphoid bone is the largest bone of the proximal row of wrist bones, its long axis being from above downward, lateralward, and forward. It is approximately the size and shape of a medium sized cashew. The bone takes a semi-similar form of a boat. In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius. [WP,unvetted]." [Wikipedia:Scaphoid] comment: todo - check AAO placement; in rodents this is fused with the lunate to make the scapholunate subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "navicular bone of hand" EXACT [] synonym: "navicular of hand" RELATED [] synonym: "os carpi radiale" EXACT [] synonym: "os naviculare manus" RELATED [Wikipedia:Scaphoid_bone] synonym: "os scaphoideum" RELATED [Wikipedia:Scaphoid_bone] synonym: "radial carpal bone" RELATED [] synonym: "radiale" RELATED [AAO:0000790, Wikipedia:Scaphoid] synonym: "scaphoid bone" EXACT [] xref: AAO:0000790 xref: FMA:23709 xref: GAID:180 xref: MA:0002555 xref: MESH:A.02.835.232.087.144.650 xref: OpenCyc:Mx4rwAwWe5wpEbGdrcN5Y29ycA xref: SCTID:181958008 xref: galen:Scaphoid xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Scaphoid_Bone is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0007960 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! scapholunate [Term] id: UBERON:0001428 name: lunate namespace: uberon alt_id: UBERON:FMA_23712-MA_0002556 def: "The lunate bone (semilunar bone) is a carpal bone (wrist bone) in the human hand that may be distinguished by its deep concavity and crescentic outline. It is situated in the center of the proximal row of the carpus (wrist) region between the fore arm and hand (manus). In standard medical posture, the lunate carpal bone is situated between the lateral Scaphoid bone and medial Triquetral bone. The lunate carpal bone straddles distally the bordering ulna and radius bones and proximally to distal carpus (wrist) Trapezium bone and Trapezoid bone[WP]." [Wikipedia:Lunate_bone] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intermediate carpal bone" RELATED [] synonym: "lunate bone" EXACT [] synonym: "os carpi intermedium" EXACT [] synonym: "semilunar" RELATED [] synonym: "semilunar bone" EXACT [] xref: FMA:23712 xref: GAID:181 xref: MA:0002556 xref: MESH:A.02.835.232.087.144.663 xref: SCTID:181959000 xref: galen:Lunate xref: ncithesaurus:Lunate_Bone is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0007960 ! scapholunate [Term] id: UBERON:0001429 name: pisiform namespace: uberon alt_id: UBERON:FMA_23718-MA_0001339 def: "The pisiform bone (also called pisiform or lentiform bone) is a small knobbly, pea-shaped wrist bone. The pisiform bone is found in the proximal row of the carpus. It is located where the ulna (inner bone of the forearm when in anatomical position) joins the carpus (wrist). It articulates only with the triquetral. It is a sesamoid bone. The pisiform bone may be known by its small size, and by its presenting a single articular facet. It is situated on a plane anterior to the other carpal bones and is spheroidal in form. The etymology derives from the Latin pD+sum which means 'pea.' [WP,unvetted]." [Wikipedia:Pisiform_bone] comment: todo - classify as sesamoid? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "accessory carpal bone" RELATED [] synonym: "pisiform bone" EXACT [] xref: FMA:23718 xref: MA:0001339 xref: OpenCyc:Mx4rvtByTZwpEbGdrcN5Y29ycA xref: SCTID:9181003 xref: galen:Pisiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Pisiform_Bone is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0001480 ! proximal carpal bone is_a: UBERON:0007997 ! sesamoid bone of hand relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001430 name: trapezium namespace: uberon alt_id: UBERON:FMA_23721-MA_0001340 def: "." [Wikipedia:Trapezium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "greater multangular bone" EXACT [] synonym: "greater multiangular" RELATED [] synonym: "hand distal carpal bone 1" RELATED [] synonym: "trapezial bone" EXACT [] synonym: "trapezium bone" EXACT [] xref: FMA:23721 xref: MA:0001340 xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA xref: SCTID:361780007 xref: galen:Trapezium xref: ncithesaurus:Trapezial_Bone is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001431 name: trapezoid namespace: uberon alt_id: UBERON:FMA_23724-MA_0001341 def: "." [Wikipedia:Trapezoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hand distal carpal bone 2" RELATED [] synonym: "lesser multangular bone" EXACT [] synonym: "lesser multiangular" RELATED [] synonym: "trapezoid bone" EXACT [] xref: FMA:23724 xref: MA:0001341 xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvxNWBJwpEbGdrcN5Y29ycA xref: SCTID:361781006 xref: galen:Trapezoid xref: ncithesaurus:Trapezoid_Bone is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001432 name: capitate namespace: uberon alt_id: UBERON:FMA_23727-MA_0001342 def: "The capitate bone is a bone in the human hand. The capitate bone is the largest of the carpal bones, and occupies the center of the wrist. It presents, above, a rounded portion or head, which is received into the concavity formed by the scaphoid and lunate bones; a constricted portion or neck; and below this, the body. The bone is also found in many other mammals, and is homologous with the 'third distal carpal' of reptiles and amphibians. The etymology derives from the Latin capitDtus, 'having a head,' from capit-, meaning 'head.' [WP,unvetted]." [Wikipedia:Capitate, Wikipedia:Capitate_bone] comment: AAO xref sourced from WP - todo - decide whether to split class subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "capitate bone" EXACT [] synonym: "hand distal carpal bone 3" RELATED [] synonym: "os magnum (carpus)" EXACT [] xref: AAO:0000920 xref: FMA:23727 xref: MA:0001342 xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA xref: SCTID:181964001 xref: galen:Capitate xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Capitate_Bone is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001433 name: hamate namespace: uberon alt_id: UBERON:FMA_23730-MA_0001343 def: "The hamate bone (unciform bone) is a bone in the human hand that may be readily distinguished by its wedge-shaped form, and the hook-like process which projects from its volar surface. It is situated at the medial and lower angle of the carpus, with its base downward, resting on the fourth and fifth metacarpal bones, and its apex directed upward and lateralward. The bone is also found in many other mammals, and is homologous with the 'fourth distal carpal' of reptiles and amphibians. The etymology derives from the Latin hamatus 'hooked,' from hamus which means 'hook.' [WP,unvetted]." [Wikipedia:Hamate, Wikipedia:Hamate_bone] comment: AAO xref sourced from WP - todo - decide whether to split class subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hamate bone" EXACT [] synonym: "hand distal carpal bone 4" RELATED [] synonym: "unciform" RELATED [] synonym: "unciform bone" EXACT [] synonym: "uncinate" RELATED [] xref: AAO:0000932 xref: FMA:23730 xref: MA:0001343 xref: OpenCyc:Mx4rwFTmuJwpEbGdrcN5Y29ycA xref: SCTID:181967008 xref: galen:Hamate xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Hamate_Bone is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001434 name: skeletal system namespace: uberon alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434 def: "Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA, Wikipedia:Skeleton] comment: Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Skelettsystem" RELATED [BTO:0001486] synonym: "set of all bones and joints" NARROW SENSU [] synonym: "skeleton system" EXACT [] xref: AAO:0000566 xref: BTO:0001486 xref: EFO:0000806 xref: EHDAA2:0003168 xref: EV:0100139 xref: FMA:23881 xref: MA:0000018 xref: MESH:A.02 xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA xref: TAO:0000434 xref: VAO:0000027 xref: VHOG:0001254 xref: XAO:0003060 xref: ZFA:0000434 xref: ncithesaurus:Skeletal_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0001474 ! bone disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system property_value: "spatially_disjoint_from" UBERON:0001016 [Term] id: UBERON:0001435 name: carpal bone namespace: uberon alt_id: UBERON:FMA_23889-MA_0000296 def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpal_bone] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bone of carpus" EXACT [] xref: EMAPA:25056 xref: FMA:23889 xref: GAID:179 xref: MA:0000296 xref: MESH:A.02.835.232.087.144 xref: SCTID:83936004 xref: galen:CarpalBone xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png xref: ncithesaurus:Carpal_Bone is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! hand bone [Term] id: UBERON:0001436 name: phalanx of finger namespace: uberon alt_id: UBERON:FMA_23914-MA_0000306 def: "A phalanx that is part of a forelimb[Obol]." [Obol:obol] comment: This class was created automatically from a combination of ontologies synonym: "digitus manus phalanx" EXACT [OBOL:automatic] synonym: "finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit phalanx" EXACT [OBOL:automatic] synonym: "hand phalanx" EXACT [MA:0000306] synonym: "phalanges of fore digit" RELATED PLURAL [AAO:0000947] synonym: "phalanx of digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of digitus manus" EXACT [OBOL:automatic] synonym: "phalanx of fore digit" EXACT [] synonym: "phalanx of hand" EXACT [] synonym: "phalanx of hand digit" EXACT [OBOL:automatic] xref: AAO:0000947 xref: FMA:23914 xref: MA:0000306 xref: SCTID:181976001 xref: ncithesaurus:Hand_Phalanx is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! hand digit bone [Term] id: UBERON:0001437 name: epiphysis namespace: uberon alt_id: UBERON:FMA_24012-ZFA_0000019 def: "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Epiphysis] comment: see also: annular epiphysis subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "end of long bone" EXACT [] synonym: "epiphyses" EXACT PLURAL [] synonym: "long bone epiphysis" EXACT [] xref: AAO:0000742 xref: BTO:0000413 xref: FMA:24012 xref: MA:0001362 xref: MESH:A.02.835.232.251 xref: SCTID:244701002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg xref: ncithesaurus:Long_Bone_Epiphysis is_a: UBERON:0005055 ! zone of long bone [Term] id: UBERON:0001438 name: metaphysis namespace: uberon alt_id: UBERON:FMA_24014-MA_0001363 def: "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Metaphysis] comment: adjacent to or containing epiphyseal plate? Note in FMA the metaphysis is part of the diaphysis, but not in MA. In the diagram in WP, it appears to be adjacent, not part_of. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "diaphyseal end of long bone" EXACT [] synonym: "long bone metaphysis" EXACT [] synonym: "metaphyses" EXACT PLURAL [] xref: FMA:24014 xref: MA:0001363 xref: SCTID:304581004 xref: ncithesaurus:Metaphysis is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004769 ! diaphysis relationship: part_of UBERON:0003606 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! limb long bone [Term] id: UBERON:0001439 name: compact bone namespace: uberon alt_id: UBERON:FMA_24018-MA_0001461 def: "one of the two types of osseous tissue that form bones. Compact/Cortical bone facilitates bone's main functions: to support the body, protect organs, provide levers for movement, and store and release chemical elements, mainly calcium. As its name implies, cortical bone forms the cortex, or outer shell, of most bones. Again, as its name implies, compact bone is much denser than cancellous bone, which is the other type of osseous tissue. Furthermore, it is harder, stronger and stiffer than cancellous bone. Cortical bone contributes about 80% of the weight of a human skeleton. The primary anatomical and functional unit of cortical bone is the osteon.." [Wikipedia:Compact_bone] comment: MP distinguishes compact/cortical bone. in other AOs they are syns subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bony cortex" EXACT [HP:0002753] synonym: "compact bone tissue" EXACT [] synonym: "cortical bone" EXACT [] synonym: "cortical bone tissue" EXACT [] synonym: "cortical region of bone" EXACT [] synonym: "substantia compacta (pars ossea)" EXACT [] synonym: "substantia corticalis" EXACT [FMA:24018, FMA:TA] xref: FMA:24018 xref: MA:0001461 xref: SCTID:361728003 xref: galen:CorticalBone xref: ncithesaurus:Cortical_Bone is_a: UBERON:0002481 ! bone tissue relationship: part_of UBERON:0002482 ! lamellar bone disjoint_from: UBERON:0002483 ! trabecular bone tissue [Term] id: UBERON:0001440 name: forelimb skeleton namespace: uberon alt_id: UBERON:FMA_24139-MA_0000612 def: "A subdivision of skeletal system that is part of a forelimb [Obol]." [OBOL:automatic] comment: TODO - split skeleton from single bone synonym: "bones of upper limb" EXACT [] synonym: "fore limb skeleton" EXACT [] synonym: "forelimb skeleton" EXACT [VHOG:0001256] synonym: "ossa membri superioris" EXACT [FMA:24139, FMA:TA] synonym: "set of bones of upper limb" EXACT [] synonym: "skeleton of upper limb" EXACT [FMA:24139] synonym: "upper limb skeleton" EXACT [] xref: AAO:0000202 xref: EHDAA2:0002222 xref: FMA:24139 xref: VHOG:0001256 xref: XAO:0003061 is_a: UBERON:0004381 ! skeleton of limb relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001441 name: hindlimb skeleton namespace: uberon alt_id: UBERON:FMA_24140-MA_0000670 comment: editor note: consider adding subclasses for stylopod and zeugopod subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bones of lower limb" EXACT [] synonym: "hind limb skeleton" EXACT [XAO:0003062] synonym: "hind limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hindlimb skeleton" EXACT [VHOG:0001255] synonym: "hindlimb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "inferior member subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower extremity subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower limb skeleton" EXACT [] synonym: "ossa membri inferioris" EXACT [FMA:24140, FMA:TA] synonym: "set of bones of lower limb" EXACT [] synonym: "skeleton of lower limb" EXACT [FMA:24140] synonym: "subdivision of skeleton of hind limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hindlimb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of inferior member" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower extremity" EXACT [OBOL:automatic] xref: AAO:0000217 xref: EHDAA2:0002226 xref: FMA:24140 xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA xref: VHOG:0001255 xref: XAO:0003062 is_a: UBERON:0004381 ! skeleton of limb relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001442 name: skeleton of hand namespace: uberon alt_id: UBERON:FMA_24159-MA_0000619 def: "A subdivision of skeletal system that is part of a hand [Obol]." [OBOL:automatic] comment: TODO: check skeleton vs part of skeleton synonym: "arm autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "arm distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of arm subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of brachial region subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "bones of hand" EXACT [] synonym: "brachial region autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hand skeleton" EXACT [] synonym: "hand subdivision of skeleton" EXACT [OBOL:automatic] synonym: "ossa manus" EXACT [FMA:24159, FMA:TA] synonym: "proximal segment of free upper limb autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "set of bones of hand" EXACT [] synonym: "subdivision of skeleton of arm autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of arm" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of brachial region" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of brachial region autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hand" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic] xref: EHDAA2:0002227 xref: FMA:24159 xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA is_a: UBERON:0001440 ! forelimb skeleton is_a: UBERON:0006717 ! skeleton of autopod relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001443 name: chest namespace: uberon alt_id: UBERON:FMA_24216-MA_0000031 def: "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest] comment: editor note - FMA:24216 present in FMA1, but gone in subsequent versions subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior chest" EXACT [FMA:24816] synonym: "anterior thoracic region" EXACT [] synonym: "anterolateral part of thorax" EXACT [] synonym: "front of chest" EXACT [FMA:24816] synonym: "front of thorax" EXACT [] synonym: "pectus" EXACT [FMA:24816, FMA:TA] synonym: "thorax" RELATED [FMA:9576] xref: BTO:0001368 xref: EFO:0000965 xref: EV:0100010 xref: FMA:9576 xref: GAID:91 xref: MA:0000031 xref: MAT:0000295 xref: MESH:A.01.911 xref: MIAA:0000295 xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA xref: galen:Chest xref: galen:Thorax xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Chest.jpg/200px-Chest.jpg xref: ncithesaurus:Chest xref: ncithesaurus:Thorax is_a: UBERON:0009569 ! subdivision of trunk relationship: part_of UBERON:0000915 ! thoracic segment of trunk property_value: "spatially_disjoint_from" UBERON:0000916 [Term] id: UBERON:0001444 name: subdivision of head namespace: uberon alt_id: UBERON:FMA_24218-XAO_0000040 comment: This class was created automatically from a combination of ontologies synonym: "head region" EXACT [] synonym: "head subdivision" EXACT [] synonym: "region of head" EXACT [] xref: FMA:24218 xref: SCTID:123852005 xref: XAO:0000040 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0001445 name: skeleton of foot namespace: uberon alt_id: UBERON:FMA_24222-MA_0000643 def: "A subdivision of skeletal system that is part of a foot [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autopod of hind limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of hindlimb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of inferior member subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of lower extremity subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity subdivision of skeleton" EXACT [OBOL:automatic] synonym: "foot skeleton" EXACT [] synonym: "foot subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hind limb autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hindlimb autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "inferior member autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower extremity autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "set of bones of foot" EXACT [] synonym: "subdivision of skeleton of autopod of hind limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of inferior member" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of foot" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hind limb autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hindlimb autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of inferior member autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower extremity autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb subdivision of skeleton" EXACT [OBOL:automatic] xref: EHDAA2:0002228 xref: FMA:24222 xref: OpenCyc:Mx4rv5ridZwpEbGdrcN5Y29ycA xref: ncithesaurus:Foot_Bone is_a: UBERON:0001441 ! hindlimb skeleton is_a: UBERON:0006717 ! skeleton of autopod relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001446 name: fibula namespace: uberon alt_id: UBERON:FMA_24479-MA_0001360 def: "The fibula or calf bone is a bone located on the lateral side of the tibia, with which it is connected above and below. It is the smaller of the two bones, and, in proportion to its length, the most slender of all the long bones. Its upper extremity is small, placed toward the back of the head of the tibia, below the level of the knee-joint, and excluded from the formation of this joint. Its lower extremity inclines a little forward, so as to be on a plane anterior to that of the upper end; it projects below the tibia, and forms the lateral part of the ankle-joint. [WP,unvetted]." [Wikipedia:Fibula] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000891 xref: BTO:0002346 xref: EFO:0003052 xref: EMAPA:18512 xref: EMAPA:19141 xref: FMA:24479 xref: GAID:202 xref: MA:0001360 xref: MESH:A.02.835.232.500.321 xref: SCTID:302529003 xref: galen:Fibula xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Illu_lower_extremity.jpg/200px-Illu_lower_extremity.jpg xref: ncithesaurus:Fibula is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! lower leg bone relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0001447 name: tarsal bone namespace: uberon alt_id: UBERON:FMA_24491-MA_0000297 def: "In humans, cluster of bones in the foot between the tibia and fibula and the metatarsus. The bones of the tarsus do not belong to individual toes, whereas those of the metatarsus do. The joint between the tibia and fibula and the tarsus is referred to as the ankle joint[WP]." [Wikipedia:Ankle_bone] comment: In primitive tetrapods, such as Trematops, the tarsus consists of three rows of bones. There are three proximal tarsals, the tibiale, intermedium, and fibulare, named for their points of articulation with the bones of the lower limb. These are followed by a second row of four bones, referred to as the centralia (singular: centrale), and then a row of five distal tarsals, each articulating with a single metatarsal. In the great majority of tetrapods, including all of those alive today, this simple pattern is modified by the loss and fusion of various of the bones.[3] In reptiles and mammals, there are normally just two proximal tarsals, the calcaneus (equivalent to the amphibian fibulare) and the talus (probably derived from a fusion of multiple bones). In mammals, including humans, the talus forms a hinge joint with the tibia, a feature especially well developed in the artiodactyls. The calcaneus is also modified, forming a heel for the attachment of the Achilles tendon. Neither of these adaptations is found in reptiles, which have a relatively simple structure to both bones.[3] The fifth distal tarsal disappears relatively early in evolution, with the remainder becoming the cuneiform and cuboid bones. Reptiles usually retain two centralia, while mammals typically have only one (the navicular).[3] In birds, the tarsus has disappeared, with the proximal tarsals having fused with the tibia, the centralia having disappeared, and the distal bones having fused with the metatarsals to form a single tarsometatarsus bone, effectively giving the leg a third segment[Wikipedia:Tarsus_(skeleton)] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ankle bone" EXACT [] synonym: "bone of ankle" EXACT [] synonym: "bone of tarsus" EXACT [] synonym: "bony tarsus" RELATED [BTO:0002343] synonym: "hind mesopodium" RELATED [AAO:0000220] synonym: "ossa tarsalia" EXACT PLURAL [FMA:71339, FMA:TA] synonym: "ossa tarsi" EXACT PLURAL [FMA:71339, FMA:TA] synonym: "tarsal" RELATED [BTO:0002343] synonym: "tarsus osseus" RELATED [BTO:0002343] xref: AAO:0000220 xref: BTO:0002343 xref: EMAPA:25072 xref: FMA:24491 xref: GAID:194 xref: MA:0000297 xref: MESH:A.02.835.232.300.710 xref: SCTID:108372004 xref: galen:TarsalBone xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png xref: ncithesaurus:Tarsal_Bone is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! foot bone [Term] id: UBERON:0001448 name: metatarsal bone namespace: uberon alt_id: UBERON:FMA_24492-MA_0000303 def: "The metatarsus or metatarsal bones are a group of five long bones in the foot located between the tarsal bones of the hind- and mid-foot and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the hand. [WP,unvetted]." [Wikipedia:Metatarsal_bone] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "metatarsal" EXACT [] synonym: "ossa metatarsalia" RELATED [BTO:0002347] synonym: "ossa metatarsi" RELATED [BTO:0002347] xref: BTO:0002347 xref: FMA:24492 xref: GAID:193 xref: MA:0000303 xref: MESH:A.02.835.232.300.492 xref: SCTID:302532000 xref: galen:Metatarsal xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: ncithesaurus:Metatarsal_Bone is_a: UBERON:0001445 ! skeleton of foot is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003821 ! metacarpal/metatarsal bone is_a: UBERON:0005899 ! foot bone [Term] id: UBERON:0001449 name: phalanx of toe namespace: uberon alt_id: UBERON:0004272 alt_id: UBERON:FMA_24493-MA_0000305 def: "A phalanx that is part of a hindlimb[Obol]." [OBOL:automatic] synonym: "digitus pedis phalanx" EXACT [OBOL:automatic] synonym: "foot digit phalanx" EXACT [OBOL:automatic] synonym: "foot phalanx" EXACT [MA:0000305] synonym: "phalanges of hind digit" RELATED PLURAL [AAO:0000930] synonym: "phalanx of digit of foot" EXACT [OBOL:automatic] synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic] synonym: "phalanx of foot digit" EXACT [OBOL:automatic] synonym: "phalanx of hind digit" EXACT [] synonym: "toe phalanx" EXACT [OBOL:automatic] xref: AAO:0000930 xref: FMA:24493 xref: MA:0000305 xref: SCTID:302533005 xref: ncithesaurus:Foot_Phalanx xref: ncithesaurus:Phalanx_of_the_Foot is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! foot digit bone relationship: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0001450 name: calcaneus namespace: uberon alt_id: UBERON:FMA_24496-MA_0001348 def: "In humans, the calcaneus or heel bone is a bone of the tarsus of the foot which constitute the heel. In some other animals, it is the point of the hock. [WP,unvetted]." [Wikipedia:Calcaneus] comment: AAO: One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale.[AAO:0000913] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "astragalus" RELATED HOMOLOGY [AAO:0000913] synonym: "calcaneum" EXACT [] synonym: "fibulare" RELATED HOMOLOGY [AAO:0000913] synonym: "os calcis" EXACT [] xref: AAO:0000913 xref: BTO:0002355 xref: EMAPA:18501 xref: EMAPA:19134 xref: FMA:24496 xref: MA:0001348 xref: MESH:A.02.835.232.300.710.300 xref: SCTID:182099002 xref: galen:Calcaneum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/200px-Subtalar_Joint.PNG xref: ncithesaurus:Calcaneum is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001451 name: navicular bone of foot namespace: uberon alt_id: UBERON:FMA_24499-MA_0001349 def: "The navicular bone is one of the tarsal bones, found in the foot. It is located on the medial side of the foot, and articulates proximally with the talus, distally with the three cuneiform bones, and occasionally laterally with the cuboid[WP]." [Wikipedia:Navicular_bone] comment: todo - check AAO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central tarsal bone" RELATED [] synonym: "centrale" RELATED [] synonym: "navicular" EXACT [] synonym: "navicular of foot" EXACT [] synonym: "os naviculare" EXACT [BTO:0002356, FMA:24499, FMA:TA] synonym: "os naviculare pedis" EXACT [BTO:0002356] xref: AAO:0000924 xref: BTO:0002356 xref: FMA:24499 xref: MA:0001349 xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA xref: SCTID:182100005 xref: galen:Navicular xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray276.png/200px-Gray276.png xref: ncithesaurus:Centralization is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001452 name: medial cuneiform bone namespace: uberon alt_id: UBERON:FMA_24518-MA_0001352 def: "The medial cuneiform (also known as first cuneiform) is the largest of the cuneiforms. It is situated at the medial side of the foot, anterior to the navicular and posterior to the base of the first metatarsal. It articulates with four bones: the navicular, second cuneiform, and first and second metatarsals. [WP,unvetted]." [Wikipedia:Medial_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "first cuneiform bone" EXACT [] synonym: "foot distal carpal bone 1" RELATED [] synonym: "medial cuneiform" EXACT [] synonym: "os cuneiforme mediale" RELATED [BTO:0002360] synonym: "os cuneiforme primum" RELATED [BTO:0002360] synonym: "ossa cuneiforme mediale" RELATED [BTO:0002360] xref: BTO:0002360 xref: FMA:24518 xref: MA:0001352 xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA xref: SCTID:182116007 xref: galen:MedialCuneiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray290.png/200px-Gray290.png is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001453 name: intermediate cuneiform bone namespace: uberon alt_id: UBERON:FMA_24519-MA_0001353 def: "The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted]." [Wikipedia:Intermediate_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "foot distal carpal bone 2" RELATED [] synonym: "intermediate cuneiform" EXACT [] synonym: "middle cuneiform" EXACT [] synonym: "os cuneiforme intermedium" RELATED [BTO:0002359] synonym: "os cuneiforme secundum" RELATED [BTO:0002359] synonym: "second cuneiform bone" EXACT [] synonym: "second cuneiform bone of foot" EXACT [] xref: BTO:0002359 xref: FMA:24519 xref: MA:0001353 xref: SCTID:179512006 xref: galen:IntermediateCuneiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001454 name: lateral cuneiform bone namespace: uberon alt_id: UBERON:FMA_24520-MA_0001354 def: "The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted]." [Wikipedia:Lateral_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "foor distal carpal bone 3" RELATED [] synonym: "lateral cuneiform" EXACT [] synonym: "os cuneiforme laterale" RELATED [BTO:0002358] synonym: "os cuneiforme tertium" RELATED [BTO:0002358] synonym: "ossa cuneiforme laterale" RELATED [BTO:0002358] synonym: "third cuneiform bone" EXACT [] xref: BTO:0002358 xref: FMA:24520 xref: MA:0001354 xref: OpenCyc:Mx4rvoLPu5wpEbGdrcN5Y29ycA xref: SCTID:182117003 xref: galen:LateralCuneiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001455 name: cuboid bone namespace: uberon alt_id: UBERON:FMA_24527-MA_0001355 def: "In the human body, the cuboid bone is one of the seven tarsal bones of the foot. [WP,unvetted]." [Wikipedia:Cuboid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cuboid" EXACT [] synonym: "foot distal carpal bone 4 and 5" RELATED [] synonym: "os cuboideum" RELATED [BTO:0002357] xref: BTO:0002357 xref: FMA:24527 xref: MA:0001355 xref: SCTID:182101009 xref: galen:Cuboid xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Gray274.png/200px-Gray274.png xref: ncithesaurus:Cuboid_Bone is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001456 name: face namespace: uberon alt_id: UBERON:FMA_24728-MA_0002473 def: "Subdivision of head which consists of the viscerocranium and all layers superficial to it[FMA]." [FMA:24728, Wikipedia:Face] comment: The face develops from outward growth of tissue located rostral to the cranium & pharynx. The lower jaw and most of the upper jaw are formed by growth of the first pharyngeal (branchial) arch. The upper incisor region and the nose and forehead (frontal region) are formed from tissue located rostral to the neural tube (frontonasal prominence)[vanat.cvm.umn.edu/TFFlectPDFs/LectFaceDevelop.pdf] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "visage" RELATED [BTO:0003369] xref: BTO:0003369 xref: FMA:24728 xref: GAID:64 xref: HAO:0000316 xref: MA:0002473 xref: MESH:A.01.456.505 xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA xref: SCTID:302549007 xref: galen:Face xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Mona_Lisa_headcrop.jpg/200px-Mona_Lisa_headcrop.jpg xref: ncithesaurus:Face is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:0001457 name: skin of eyelid namespace: uberon alt_id: UBERON:FMA_24760-MA_0001256 def: "A zone of skin that is part of a eyelid [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "blepharon zone of skin" EXACT [OBOL:automatic] synonym: "eyelid skin" EXACT [] synonym: "eyelid zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of blepharon" EXACT [OBOL:automatic] synonym: "zone of skin of eyelid" EXACT [OBOL:automatic] xref: FMA:24760 xref: MA:0001256 xref: SCTID:245947005 xref: ncithesaurus:Eyelid_Skin is_a: UBERON:1000021 ! skin of face [Term] id: UBERON:0001458 name: skin of lip namespace: uberon alt_id: UBERON:FMA_24764-MA_0001579 def: "A zone of skin that is part of a lip [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "lip skin" EXACT [] synonym: "lip zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of lip" EXACT [OBOL:automatic] xref: FMA:24764 xref: MA:0001579 xref: SCTID:244092005 xref: ncithesaurus:Skin_of_the_Lip is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001084 ! skin of head is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0001459 name: skin of external ear namespace: uberon alt_id: UBERON:FMA_24775-MA_0001233 def: "A zone of skin that is part of a external ear [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic] synonym: "auricular region zone of skin" EXACT [OBOL:automatic] synonym: "ear skin" EXACT [] synonym: "external ear skin" EXACT [] synonym: "external ear zone of skin" EXACT [OBOL:automatic] synonym: "outer ear zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic] synonym: "zone of skin of external ear" EXACT [OBOL:automatic] synonym: "zone of skin of outer ear" EXACT [OBOL:automatic] xref: FMA:24775 xref: MA:0001233 xref: SCTID:244073008 xref: ncithesaurus:Ear_Skin is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001084 ! skin of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001460 name: arm namespace: uberon alt_id: UBERON:FMA_24890-MA_0000033 def: "The part of the forelimb extending from the shoulder to the autopod[cjm]." [Wikipedia:Arm] comment: This class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm. Editor note: currently declared as overlapping hand, as AOs disagree over whether some wrist parts are in the arm or hand subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "upper extremity" RELATED [MESH:A.01.378.800] xref: BTO:0001435 xref: EFO:0001410 xref: EHDAA2:0000140 xref: EHDAA:4164 xref: EHDAA:6210 xref: EHDAA:8275 xref: EMAPA:17413 xref: GAID:52 xref: MA:0000033 xref: MESH:A.01.378.800 xref: MESH:A.01.378.800.075 xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA xref: VHOG:0000339 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Upperarm.jpg/200px-Upperarm.jpg is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006058 ! multi-limb segment region relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001461 name: elbow namespace: uberon alt_id: UBERON:FMA_24901-MA_0000036 def: "The elbow is the region surrounding the elbow-jointbthe ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]." [Wikipedia:Elbow] comment: Naming conventions for pod terms under discussion within phenoscape group subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cubital region" EXACT [] synonym: "elbow limb segment" EXACT [] xref: EFO:0003069 xref: EHDAA2:0000429 xref: EHDAA:4166 xref: EHDAA:6212 xref: EMAPA:17414 xref: FMA:24901 xref: GAID:54 xref: MA:0000036 xref: MESH:A.01.378.800.420 xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA xref: VHOG:0000340 xref: galen:Elbow is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008785 ! upper limb segment relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001462 name: wrist namespace: uberon alt_id: UBERON:FMA_24922-MA_0000039 def: "The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted]." [Wikipedia:Wrist] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "carpal region" EXACT [] synonym: "regio carpalis" EXACT [FMA:24922, FMA:TA] xref: EHDAA2:0000218 xref: EHDAA:5196 xref: FMA:24922 xref: GAID:59 xref: MA:0000039 xref: MESH:A.01.378.800.667.715 xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA xref: galen:Wrist xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008785 ! upper limb segment relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001463 name: hand digit 1 namespace: uberon alt_id: UBERON:FMA_24938-MA_0000454 def: "1st (lateral-most) digit of the hand in mouse and human[Wikipedia]." [Wikipedia:Thumb] comment: This class represents all instances of the first digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "digit 1 of fore-paw" EXACT [EMAPA:17429] synonym: "digitus primus" EXACT [] synonym: "finger 1" EXACT [EHDAA2:0000511] synonym: "first digit of hand" EXACT [] synonym: "pollex" EXACT [] synonym: "pollex; digitus primus [I]" EXACT [] synonym: "thumb" EXACT [] xref: EHDAA2:0000511 xref: EMAPA:17429 xref: FMA:24938 xref: GAID:58 xref: MA:0000454 xref: MESH:A.01.378.800.667.430.705 xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA xref: SCTID:302540006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Thumb-up.jpg/200px-Thumb-up.jpg xref: ncithesaurus:Hand_Digit_1 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006048 ! digit 1 [Term] id: UBERON:0001464 name: hip namespace: uberon alt_id: UBERON:FMA_24964-MA_0000045 def: "The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]." [Wikipedia:Hip] comment: in BTO this is part of the abdomen - this creates an inconsistency if limb and abdomen are spatially disjoint subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hip region" EXACT [FMA:24964] synonym: "regio coxae" EXACT [FMA:24964] xref: BTO:0001457 xref: EFO:0001929 xref: EHDAA2:0000783 xref: EHDAA:5153 xref: EHDAA:6178 xref: EMAPA:17490 xref: FMA:24964 xref: GAID:47 xref: MA:0000045 xref: MESH:A.01.378.610.400 xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA xref: SCTID:302543008 xref: VHOG:0000346 xref: galen:Hip xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Hip.jpg/200px-Hip.jpg xref: ncithesaurus:Hip is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0002103 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hindlimb [Term] id: UBERON:0001465 name: knee namespace: uberon alt_id: UBERON:FMA_24974-MA_0000046 def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0003595 xref: EFO:0001957 xref: EHDAA2:0000895 xref: EHDAA:5159 xref: EHDAA:6184 xref: EMAPA:17493 xref: FMA:24974 xref: GAID:48 xref: MA:0000046 xref: MESH:A.01.378.610.450 xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA xref: VHOG:0000347 xref: galen:Knee xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Male_Knee_by_David_Shankbone.jpg/200px-Male_Knee_by_David_Shankbone.jpg is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001466 name: foot digit namespace: uberon alt_id: UBERON:0000027 alt_id: UBERON:FMA_25046-MA_0000048 def: "A digit that is part_of a hindlimb[Obol]." [Wikipedia:Toe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "digit of foot" EXACT [] synonym: "digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "digiti pedis" EXACT PLURAL [FMA:70664, FMA:TA] synonym: "digitipedis" RELATED [BTO:0002348] synonym: "digitus pedis" EXACT [] synonym: "hind digit" EXACT [XAO:0003035] synonym: "hind_digit" EXACT [AAO:0000888] synonym: "hindlimb digit" EXACT [] synonym: "toe" EXACT [FMA:25046] xref: AAO:0000888 xref: BTO:0002348 xref: FMA:25046 xref: GAID:44 xref: MA:0000048 xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA xref: SCTID:116667001 xref: XAO:0003035 xref: galen:Toe xref: ncithesaurus:Toe is_a: UBERON:0002544 ! digit is_a: UBERON:0005445 ! segment of foot relationship: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0001441 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hindlimb skeleton [Term] id: UBERON:0001467 name: shoulder namespace: uberon alt_id: UBERON:FMA_25202-MA_0000038 def: "In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]." [Wikipedia:Shoulder] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EFO:0003068 xref: EHDAA2:0001834 xref: EHDAA:4180 xref: EHDAA:6228 xref: EMAPA:17421 xref: FMA:25202 xref: GAID:60 xref: MA:0000038 xref: MESH:A.01.378.800.750 xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA xref: VHOG:0000342 xref: galen:Shoulder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Shoulderjoint.PNG/200px-Shoulderjoint.PNG xref: ncithesaurus:Shoulder is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008785 ! upper limb segment relationship: part_of UBERON:0001421 ! pectoral girdle relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001468 name: intervertebral symphysis namespace: uberon alt_id: UBERON:FMA_25511-MA_0001514 comment: This class was created automatically from a combination of ontologies synonym: "joint of vertebral body" EXACT [] xref: FMA:25511 xref: MA:0001514 xref: SCTID:244512000 is_a: UBERON:0002216 ! symphysis is_a: UBERON:0005174 ! back organ relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0001469 name: sternoclavicular joint namespace: uberon alt_id: UBERON:FMA_25883-MA_0001507 def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [Wikipedia:Sternoclavicular_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:19203 xref: FMA:25883 xref: GAID:270 xref: MA:0001507 xref: MESH:A.02.835.583.781 xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rwI-ZZpwpEbGdrcN5Y29ycA xref: SCTID:182165002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Gray325.png/200px-Gray325.png xref: ncithesaurus:Sternoclavicular_Joint is_a: UBERON:0000982 ! skeletal joint is_a: UBERON:0008114 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! joint of girdle [Term] id: UBERON:0001470 name: glenohumeral joint namespace: uberon alt_id: UBERON:FMA_25912-MA_0000459 def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [Wikipedia:Glenohumeral_joint] comment: in FMA, this is part of the bony pectoral girdle, alongside the skeleton of pectoral girdle subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "articulatio humeri" EXACT [FMA:25912, FMA:TA] synonym: "humeral joint" EXACT [FMA:25912] synonym: "joint of shoulder" EXACT [OBOL:automatic] synonym: "shoulder joint" EXACT [MA:0000459] xref: EMAPA:19105 xref: FMA:25912 xref: GAID:269 xref: MA:0000459 xref: MESH:A.02.835.583.748 xref: OpenCyc:Mx4rwP32BZwpEbGdrcN5Y29ycA xref: SCTID:182168000 xref: VHOG:0001002 xref: galen:ShoulderJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray327.png/200px-Gray327.png xref: ncithesaurus:Shoulder_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0008114 ! joint of girdle relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001471 name: skin of prepuce of penis namespace: uberon alt_id: UBERON:FMA_27648-MA_0001744 def: "A zone of skin that is part of a prepuce of penis [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "foreskin of penis" EXACT [] synonym: "foreskin zone of skin" EXACT [OBOL:automatic] synonym: "penile prepuce zone of skin" EXACT [OBOL:automatic] synonym: "penis foreskin" EXACT [] synonym: "prepuce of penis zone of skin" EXACT [OBOL:automatic] synonym: "prepuce zone of skin" EXACT [OBOL:automatic] synonym: "preputial skin" EXACT [] synonym: "zone of skin of foreskin" EXACT [OBOL:automatic] synonym: "zone of skin of penile prepuce" EXACT [OBOL:automatic] synonym: "zone of skin of prepuce" EXACT [OBOL:automatic] synonym: "zone of skin of prepuce of penis" EXACT [OBOL:automatic] xref: EV:0100109 xref: FMA:27648 xref: MA:0001744 xref: VHOG:0001342 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0001472 name: vaginal venous plexus namespace: uberon alt_id: UBERON:FMA_29713-MA_0002257 def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_venous_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "venous vaginal plexus" EXACT [] xref: FMA:29713 xref: MA:0002257 xref: SCTID:294653003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0001473 name: lymphatic vessel namespace: uberon alt_id: UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105 def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lymph vessel" EXACT [] xref: AAO:0011005 xref: BTO:0000752 xref: EFO:0000873 xref: FMA:30315 xref: MA:0000138 xref: MAT:0000443 xref: OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA xref: SCTID:279089004 xref: TAO:0005105 xref: VHOG:0001249 xref: XAO:0000375 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Illu_lymph_capillary.jpg/200px-Illu_lymph_capillary.jpg xref: ncithesaurus:Lymphatic_Vessel is_a: UBERON:0000055 ! vessel relationship: part_of UBERON:0004536 ! lymph vasculature relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system relationship: develops_from UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! mesoderm disjoint_from: UBERON:0001981 ! blood vessel [Term] id: UBERON:0001474 name: bone namespace: uberon alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514 def: "Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]" [BTO:0000140, FMA:5018, Wikipedia:Bone, ZFIN:curator] comment: H&W - a vascularized, supporting skeletal tissue, which also can form ectopically outside the skeleton. Bone consists of cells and a mineralized extracellular matrix that is permeated by canals (canaliculi) that contain osteocyte processes (Plate 2). Bone is deposited by bone-forming cells (osteoblasts), which, when they cease dividing, transform into osteocytes. The first bone matrix deposited is unmineralized and is known as osteoid (Plate 3). Subsequently, osteoid is impregnated with hydroxyapatite to form the mineralized tissue we know as bone, a tissue that is modeled, remodeled, and/or removed by mono- or multinucleated osteoclasts (and sometimes by osteocytes) subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bone organ" EXACT [] xref: AAO:0000047 xref: AEO:0000082 xref: BTO:0000140 xref: EFO:0000298 xref: EHDAA2:0003082 xref: ENVO:00002039 xref: EV:0100140 xref: FMA:30317 xref: FMA:5018 xref: GAID:92 xref: MA:0001459 xref: MAT:0000299 xref: MIAA:0000299 xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA xref: SCTID:272673000 xref: TAO:0001514 xref: VHOG:0001190 xref: XAO:0000169 xref: ZFA:0001514 xref: galen:Bone xref: ncithesaurus:Bone is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0002384 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! connective tissue is_a: UBERON:0004755 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! skeletal tissue relationship: part_of UBERON:0001434 ! skeletal system relationship: part_of UBERON:0004288 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! skeleton relationship: part_of UBERON:0004288 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! skeleton disjoint_from: UBERON:0001630 ! muscle organ disjoint_from: UBERON:0007823 ! limb/fin girdle property_value: "spatially_disjoint_from" UBERON:0001015 property_value: "spatially_disjoint_from" UBERON:0001630 property_value: "spatially_disjoint_from" UBERON:0002385 [Term] id: UBERON:0001475 name: ligament namespace: uberon alt_id: UBERON:FMA_30319-FMA_76821-MA_0000113-MIAA_0000113 is_obsolete: true consider: UBERON:0000211 ! ligament consider: UBERON:0002360 ! meninx comment: made obsolete as it incorrectly grouped classes xref: FMA:30319 [Term] id: UBERON:0001476 name: deltoid namespace: uberon alt_id: UBERON:FMA_32521-MA_0002286 def: "Intrinsic muscle of shoulder which attaches to the spine of scapula, clavicle and humerus.[FMA]" [FMA:FMA, Wikipedia:Deltoid_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "deltoid muscle" RELATED [Wikipedia:Deltoid_muscle] synonym: "deltoideus" RELATED [Wikipedia:Deltoid_muscle] synonym: "deltoideus muscle" RELATED [Wikipedia:Deltoid_muscle] xref: EFO:0001412 xref: EHDAA2:0000339 xref: EMAPA:18177 xref: FMA:32521 xref: MA:0002286 xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA xref: VHOG:0000846 xref: ncithesaurus:Deltoid is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001477 name: infraspinatus muscle namespace: uberon alt_id: UBERON:FMA_32546-MA_0002323 def: "The Infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [Wikipedia:Infraspinatus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "infraspinatus" EXACT [] xref: EHDAA2:0000826 xref: EHDAA:8305 xref: EMAPA:18526 xref: FMA:32546 xref: MA:0002323 xref: OpenCyc:Mx4rwVT4_ZwpEbGdrcN5Y29ycA xref: SCTID:277439009 xref: VHOG:0000921 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png xref: ncithesaurus:Infraspinatus is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001478 name: teres major namespace: uberon alt_id: UBERON:FMA_32549-MA_0002392 def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [Wikipedia:Teres_major] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "teres major muscle" EXACT [] xref: EHDAA2:0002004 xref: EHDAA:8321 xref: EMAPA:19069 xref: EMAPA:19110 xref: FMA:32549 xref: MA:0002392 xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA xref: SCTID:277444002 xref: VHOG:0000750 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png xref: ncithesaurus:Teres_Major_Muscle is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001479 name: sesamoid bone namespace: uberon alt_id: UBERON:FMA_32672-MA_0001375 def: "a bone embedded within a tendon. Sesamoids are found in locations where a tendon passes over a joint, such as the hand, knee, and foot. Functionally, they act to protect the tendon and to increase its mechanical effect. The presence of the sesamoid bone holds the tendon slightly farther away from the center of the joint and thus increases its moment arm. Sesamoid bones also prevent the tendon from flattening into the joint as tension increases and therefore also maintain a more consistent moment arm through a variety of possible tendon loads. This differs from menisci, which are made of cartilage and rather act to disperse the weight of the body on joints and reduce friction during movement." [Wikipedia:Sesamoid_bone] comment: TODO - generalize to VAO: Replacement element; an ossicle; often an endochondral replacement element that has cartilage and bone states that develops in dense regular connective tissue (e.g., tendons and ligaments). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AEO:0000086 xref: EHDAA2:0003086 xref: FMA:32672 xref: GAID:210 xref: MA:0001375 xref: MESH:A.02.835.232.730 xref: SCTID:362914002 xref: galen:SessamoidBone xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png xref: ncithesaurus:Sesamoid_Bone is_a: UBERON:0002428 ! limb bone [Term] id: UBERON:0001480 name: proximal carpal bone namespace: uberon alt_id: UBERON:FMA_33302-MA_0002557 comment: This class was created automatically from a combination of ontologies xref: FMA:33302 xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0001481 name: distal carpal bone namespace: uberon alt_id: UBERON:FMA_33303-MA_0002558 comment: This class was created automatically from a combination of ontologies xref: AAO:0000847 xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0001482 name: muscle of shoulder namespace: uberon alt_id: UBERON:FMA_33531-MA_0000633 def: "A muscle organ that is part of a shoulder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "muscle organ of shoulder" EXACT [OBOL:automatic] synonym: "shoulder muscle" EXACT [] synonym: "shoulder muscle organ" EXACT [OBOL:automatic] xref: FMA:33531 xref: MA:0000633 is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001483 name: skin of shoulder namespace: uberon alt_id: UBERON:FMA_34830-MA_0000635 def: "A zone of skin that is part of a shoulder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "shoulder skin" EXACT [] synonym: "shoulder zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of shoulder" EXACT [OBOL:automatic] xref: EMAPA:18059 xref: FMA:34830 xref: MA:0000635 xref: SCTID:244131002 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003531 ! forelimb skin relationship: part_of UBERON:0001419 ! skin of limb relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001484 name: articular capsule namespace: uberon alt_id: UBERON:FMA_34836-MA_0001519 def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [Wikipedia:Articular_capsule] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "capsula articularis" EXACT [FMA:34836, FMA:TA] synonym: "fibrous capsule of joint" EXACT [] synonym: "joint capsule" EXACT [] synonym: "joint fibrous capsule" EXACT [] xref: FMA:34836 xref: GAID:263 xref: MA:0001519 xref: MESH:A.02.835.583.443 xref: SCTID:182238002 xref: galen:JointCapsule xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Gray299.png/200px-Gray299.png xref: ncithesaurus:Joint_Capsule is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0001485 name: knee joint namespace: uberon alt_id: UBERON:FMA_35175-MA_0000471 def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "joint of knee" EXACT [OBOL:automatic] xref: EFO:0001957 xref: EMAPA:19137 xref: FMA:35175 xref: GAID:114 xref: MA:0000471 xref: MESH:A.02.835.583.475 xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA xref: SCTID:182204005 xref: VHOG:0001003 xref: galen:KneeJoint xref: ncithesaurus:Knee_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0004174 ! leg joint relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001486 name: hip joint namespace: uberon alt_id: UBERON:FMA_35178-MA_0000470 def: "." [Wikipedia:Hip_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "articulatio coxofemoralis" EXACT [] synonym: "femoro-iliac joint" EXACT [] synonym: "hip region joint" EXACT [OBOL:automatic] synonym: "joint of hip" EXACT [OBOL:automatic] synonym: "joint of hip region" EXACT [OBOL:automatic] synonym: "joint of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae joint" EXACT [OBOL:automatic] xref: BTO:0001502 xref: EMAPA:19136 xref: FMA:35178 xref: GAID:262 xref: MA:0000470 xref: MESH:A.02.835.583.411 xref: OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA xref: SCTID:182201002 xref: VHOG:0001001 xref: galen:HipJoint xref: ncithesaurus:Hip_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003657 ! limb joint is_a: UBERON:0008114 ! joint of girdle is_a: UBERON:0003840 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hindlimb joint relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0001487 name: joint of foot namespace: uberon alt_id: UBERON:FMA_35194-MA_0000464 def: "A skeletal joint that is part of a foot [Obol]." [OBOL:automatic] comment: TODO check FMA - use the set class for now synonym: "articulationes pedis" EXACT [FMA:71349, FMA:TA] synonym: "autopod of hind limb joint" EXACT [OBOL:automatic] synonym: "autopod of hindlimb joint" EXACT [OBOL:automatic] synonym: "autopod of inferior member joint" EXACT [OBOL:automatic] synonym: "autopod of lower extremity joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity joint" EXACT [OBOL:automatic] synonym: "foot joint" EXACT [] synonym: "hind limb autopod joint" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment joint" EXACT [OBOL:automatic] synonym: "hindlimb autopod joint" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment joint" EXACT [OBOL:automatic] synonym: "inferior member autopod joint" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment joint" EXACT [OBOL:automatic] synonym: "joint of autopod of hind limb" EXACT [OBOL:automatic] synonym: "joint of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "joint of autopod of inferior member" EXACT [OBOL:automatic] synonym: "joint of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "joint of hind limb autopod" EXACT [OBOL:automatic] synonym: "joint of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of hindlimb autopod" EXACT [OBOL:automatic] synonym: "joint of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of inferior member autopod" EXACT [OBOL:automatic] synonym: "joint of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of lower extremity autopod" EXACT [OBOL:automatic] synonym: "joint of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "joints of foot" EXACT [FMA:71349] synonym: "lower extremity autopod joint" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment joint" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb joint" EXACT [OBOL:automatic] xref: FMA:35194 xref: FMA:71349 xref: GAID:256 xref: MA:0000464 xref: MESH:A.02.835.583.378 xref: SCTID:244555001 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0003841 ! autopod joint relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001488 name: ankle joint namespace: uberon alt_id: UBERON:FMA_35195-MA_0000463 def: "In human anatomy, the ankle joint is formed where the foot and the leg meet. The ankle, or talocrural joint, is a synovial hinge joint that connects the distal ends of the tibia and fibula in the lower limb with the proximal end of the talus bone in the foot. The articulation between the tibia and the talus bears more weight than between the smaller fibula and the talus. The term 'ankle' is used to describe structures in the region of the ankle joint proper. [WP,unvetted]." [Wikipedia:Ankle_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "joint of ankle" EXACT [OBOL:automatic] synonym: "talocrural joint" EXACT [] xref: BTO:0004706 xref: EFO:0001409 xref: FMA:35195 xref: GAID:257 xref: MA:0000463 xref: MESH:A.02.835.583.378.062 xref: OpenCyc:Mx4rvwiy35wpEbGdrcN5Y29ycA xref: SCTID:182212002 xref: galen:AnkleJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png xref: ncithesaurus:Ankle_Joint is_a: UBERON:0001487 ! joint of foot relationship: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0001489 name: joint of hand namespace: uberon alt_id: UBERON:FMA_35245-MA_0000452 def: "A skeletal joint that is part of a hand [Obol]." [OBOL:automatic] comment: TODO check FMA - use the set class for now synonym: "arm autopod joint" EXACT [OBOL:automatic] synonym: "arm distal free limb segment joint" EXACT [OBOL:automatic] synonym: "articulationes manus" EXACT [FMA:71345, FMA:TA] synonym: "autopod of arm joint" EXACT [OBOL:automatic] synonym: "autopod of brachial region joint" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb joint" EXACT [OBOL:automatic] synonym: "brachial region autopod joint" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb joint" EXACT [OBOL:automatic] synonym: "hand joint" EXACT [] synonym: "joint of arm autopod" EXACT [OBOL:automatic] synonym: "joint of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of autopod of arm" EXACT [OBOL:automatic] synonym: "joint of autopod of brachial region" EXACT [OBOL:automatic] synonym: "joint of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "joint of brachial region autopod" EXACT [OBOL:automatic] synonym: "joint of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "joint of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "joint of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "joints of hand" EXACT [FMA:71345] synonym: "proximal segment of free upper limb autopod joint" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment joint" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb joint" EXACT [OBOL:automatic] xref: FMA:35245 xref: FMA:71345 xref: MA:0000452 xref: SCTID:244546004 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0003841 ! autopod joint relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001490 name: elbow joint namespace: uberon alt_id: UBERON:FMA_35289-MA_0000451 def: "Synovial joint that is part of the elbow[Obol]. The elbow joint (Articulatio cubiti) is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis[HP]." [Wikipedia:Elbow_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Articulatio cubiti" EXACT [] synonym: "cubital region joint" EXACT [OBOL:automatic] synonym: "joint of cubital region" EXACT [OBOL:automatic] synonym: "joint of elbow" EXACT [OBOL:automatic] xref: EMAPA:19102 xref: FMA:35289 xref: GAID:253 xref: MA:0000451 xref: MESH:A.02.835.583.290 xref: SCTID:182169008 xref: VHOG:0000997 xref: galen:ElbowJoint xref: ncithesaurus:Elbow_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! forelimb joint relationship: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0001491 name: wrist joint namespace: uberon alt_id: UBERON:FMA_35291-MA_0000460 def: "In human anatomy, the wrist is variously defined as (1) the carpus or carpal bones, the complex of eight bones forming the proximal skeletal segment of the hand; (2) the wrist joint or radiocarpal joint, the joint between the radius and the carpus; and (3) the anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum. As a consequence of these various definitions, fractures to the carpal bones are referred to as carpal fractures, while fractures such as distal radius fracture are considered fractures to the wrist. [WP,unvetted]." [Wikipedia:Wrist_joint] comment: todo - determine the difference between MA:0000460 and MA:0000461 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "carpal region joint" EXACT [OBOL:automatic] synonym: "joint of carpal region" EXACT [OBOL:automatic] synonym: "joint of wrist" EXACT [] synonym: "radio-carpal joint" EXACT [MA:0000461] synonym: "radiocarpal joint" EXACT [FMA:35291] xref: EMAPA:19205 xref: FMA:35291 xref: GAID:274 xref: MA:0000460 xref: MA:0000461 xref: MESH:A.02.835.583.959 xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA xref: SCTID:182178002 xref: galen:WristJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png xref: ncithesaurus:Wrist_Joint is_a: UBERON:0001489 ! joint of hand relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001492 name: radial nerve namespace: uberon alt_id: UBERON:FMA_37069-MA_0001171 def: "The radial nerve is a nerve in the human body that supplies the upper limb. It supplies the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin. It originates from the posterior cord of the brachial plexus with roots from C5, C6, C7, C8 & T1. The radial nerve and its branches supply the dorsal muscles, such as triceps brachii, the extrinsic extensors of the wrist and hands, and the cutaneous nerve supply to most of the back of the hand. (The ulnar nerve cutaneously innervates the back of the little finger and adjacent half of the ring finger). The radial nerve divides into a deep branch (which becomes the posterior interosseous nerve), and continues as the superficial branch which goes on to innervate the dorsum (back) of the hand. [WP,unvetted]." [Wikipedia:Radial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0001584 xref: EHDAA:5650 xref: EMAPA:17278 xref: FMA:37069 xref: GAID:845 xref: MA:0001171 xref: MESH:A.08.800.800.720.050.700 xref: OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA xref: SCTID:181011002 xref: VHOG:0000896 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray818.png/200px-Gray818.png xref: ncithesaurus:Radial_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001493 name: axillary nerve namespace: uberon alt_id: UBERON:FMA_37072-MA_0001166 def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [Wikipedia:Axillary_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auxillery nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "circumflex humeral nerve" EXACT [] synonym: "circumflex nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "nervus axillaris" RELATED [Wikipedia:Axillary_nerve] xref: EMAPA:18802 xref: FMA:37072 xref: MA:0001166 xref: OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA xref: SCTID:181009006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg xref: ncithesaurus:Axillary_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001494 name: ulnar nerve namespace: uberon alt_id: UBERON:0005668 alt_id: UBERON:FMA_37319-MA_0001174 def: "In human anatomy, the ulnar nerve is a nerve which runs near the ulna bone. The ulnar nerve is the largest unprotected nerve in the human body (meaning, unprotected by muscle or bone), and the only unprotected nerve that does not serve a purely sensory function (those nerves specifically meant to perceive changes in the environment, such as nerves in the skin). This nerve is directly connected to the little finger, and the adjacent half of the ring finger, supplying the palmar side of these fingers, including both front and back of the tips, perhaps as far back as the fingernail beds. One method of injuring the nerve is to strike the medial epicondyle of the humerus from posteriorly, or inferiorly with the elbow flexed. The ulnar nerve is trapped between the bone and the overlying skin at this point. This is commonly referred to as hitting one's 'funny bone. ' This name is thought to be a pun, based on the sound resemblance between the words 'humerus' and 'humourous' . [WP,unvetted]." [Wikipedia:Ulnar_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0002099 xref: EHDAA:5652 xref: EMAPA:17279 xref: FMA:37319 xref: GAID:846 xref: MA:0001174 xref: MESH:A.08.800.800.720.050.850 xref: SCTID:181012009 xref: VHOG:0000922 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg xref: ncithesaurus:Ulnar_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001495 name: pectoral muscle namespace: uberon alt_id: UBERON:FMA_37349-MA_0002423 comment: Note: in FMA isa muscle of pectoral girdle; todo - resolve spatial disjointness inconsistencies and add subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "breast muscle" RELATED [BTO:0000023] synonym: "muscle of pectoral part of chest" EXACT [FMA:37349] synonym: "muscle of pectoral region" EXACT [FMA:37349] synonym: "pectoralis muscle" RELATED [BTO:0000023] xref: BTO:0000023 xref: FMA:37349 xref: GAID:153 xref: MA:0002423 xref: MESH:A.02.633.567.775 xref: SCTID:181621006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png xref: ncithesaurus:Pectoralis_Muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003830 ! thoracic segment muscle relationship: part_of UBERON:0004464 ! musculature of thorax [Term] id: UBERON:0001496 name: ascending aorta namespace: uberon alt_id: UBERON:FMA_3736-MA_0002570 def: "The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heartbs axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [GO:0035905, Wikipedia:Ascending_aorta] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pars ascendens aortae" EXACT [] xref: EHDAA2:0000147 xref: EHDAA:9828 xref: EMAPA:17014 xref: EMAPA:18604 xref: EMAPA:25959 xref: FMA:3736 xref: MA:0002570 xref: OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA xref: SCTID:181299009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Ascending_Aorta is_a: UBERON:0001515 ! thoracic aorta is_a: UBERON:0005800 ! segment of aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0001497 name: muscle of pelvic girdle namespace: uberon alt_id: UBERON:FMA_37367-MA_0000537 def: "A muscle organ that is part of a pelvic girdle [Obol]." [OBOL:automatic] comment: Note that in MA, this is a subclass of pelvis muscle synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic] synonym: "muscle organ of pelvic girdle" EXACT [OBOL:automatic] synonym: "muscle organ of pelvic girdle bone" EXACT [OBOL:automatic] synonym: "pelvic girdle bone muscle organ" EXACT [OBOL:automatic] synonym: "pelvic girdle muscle" EXACT [] synonym: "pelvic girdle muscle organ" EXACT [OBOL:automatic] xref: FMA:37367 xref: MA:0000537 is_a: UBERON:0003663 ! hindlimb muscle is_a: UBERON:0001325 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! muscle of pelvis [Term] id: UBERON:0001498 name: muscle of foot namespace: uberon alt_id: UBERON:FMA_37369-MA_0000652 def: "A muscle organ that is part of a foot [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autopod of hind limb muscle organ" EXACT [OBOL:automatic] synonym: "autopod of hindlimb muscle organ" EXACT [OBOL:automatic] synonym: "autopod of inferior member muscle organ" EXACT [OBOL:automatic] synonym: "autopod of lower extremity muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity muscle organ" EXACT [OBOL:automatic] synonym: "foot muscle" EXACT [] synonym: "foot muscle organ" EXACT [OBOL:automatic] synonym: "hind limb autopod muscle organ" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "hindlimb autopod muscle organ" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "inferior member autopod muscle organ" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "lower extremity autopod muscle organ" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of hind limb" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of inferior member" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "muscle organ of foot" EXACT [OBOL:automatic] synonym: "muscle organ of hind limb autopod" EXACT [OBOL:automatic] synonym: "muscle organ of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of hindlimb autopod" EXACT [OBOL:automatic] synonym: "muscle organ of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of inferior member autopod" EXACT [OBOL:automatic] synonym: "muscle organ of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of lower extremity autopod" EXACT [OBOL:automatic] synonym: "muscle organ of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic] xref: BTO:0000477 xref: FMA:37369 xref: MA:0000652 is_a: UBERON:0003663 ! hindlimb muscle relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001499 name: muscle of arm namespace: uberon alt_id: UBERON:FMA_37370-MA_0000594 def: "A muscle organ that is part of an arm [Obol]." [OBOL:automatic] comment: See notes on UBERON:0001460 for possible terminological confusion over term 'arm' synonym: "arm muscle" EXACT [MA:0000594] synonym: "arm muscle system" RELATED [EHDAA2:0000141] synonym: "muscle of upper arm or lower arm" EXACT [UBERON:cjm] synonym: "upper arm / lower arm muscle" EXACT [UBERON:cjm] xref: EHDAA2:0000141 xref: MA:0000594 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001500 name: muscle of hand namespace: uberon alt_id: UBERON:FMA_37372-MA_0000628 def: "A muscle organ that is part of a hand [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arm autopod muscle organ" EXACT [OBOL:automatic] synonym: "arm distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "autopod of arm muscle organ" EXACT [OBOL:automatic] synonym: "autopod of brachial region muscle organ" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic] synonym: "brachial region autopod muscle organ" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic] synonym: "hand muscle" EXACT [] synonym: "hand muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of arm autopod" EXACT [OBOL:automatic] synonym: "muscle organ of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of arm" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of brachial region" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "muscle organ of brachial region autopod" EXACT [OBOL:automatic] synonym: "muscle organ of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "muscle organ of hand" EXACT [OBOL:automatic] synonym: "muscle organ of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "muscle organ of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod muscle organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic] xref: FMA:37372 xref: MA:0000628 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001501 name: lumbrical of hand namespace: uberon alt_id: UBERON:FMA_37385-MA_0002316 comment: This class was created automatically from a combination of ontologies synonym: "hand lumbrical" EXACT [] synonym: "hand lumbrical muscle" EXACT [] xref: FMA:37385 xref: MA:0002316 xref: SCTID:181654008 is_a: UBERON:0001500 ! muscle of hand [Term] id: UBERON:0001502 name: interosseous muscle of hand namespace: uberon alt_id: UBERON:FMA_37417-MA_0002313 comment: This class was created automatically from a combination of ontologies synonym: "hand interosseous muscle" EXACT [] xref: FMA:37417 xref: MA:0002313 xref: SCTID:265804003 xref: ncithesaurus:Hand_Interosseous_Muscle is_a: UBERON:0001500 ! muscle of hand is_a: UBERON:0006508 ! interosseus muscle [Term] id: UBERON:0001503 name: dorsal interosseous of hand namespace: uberon alt_id: UBERON:FMA_37418-MA_0002314 def: "The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]." [Wikipedia:Dorsal_interossei_of_the_hand] synonym: "dorsal hand interosseus muscle" EXACT [] xref: FMA:37418 xref: MA:0002314 xref: SCTID:245002007 xref: ncithesaurus:Dorsal_Hand_Interosseous_Muscle is_a: UBERON:0001502 ! interosseous muscle of hand [Term] id: UBERON:0001504 name: lumbrical of foot namespace: uberon alt_id: UBERON:FMA_37453-MA_0002305 comment: This class was created automatically from a combination of ontologies synonym: "foot lumbrical" EXACT [] synonym: "foot lumbrical muscle" EXACT [] xref: FMA:37453 xref: MA:0002305 xref: SCTID:181715003 is_a: UBERON:0001498 ! muscle of foot [Term] id: UBERON:0001505 name: coracobrachialis namespace: uberon alt_id: UBERON:FMA_37664-MA_0002282 def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [Wikipedia:Coracobrachialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Pirogoff's aponeurosis" EXACT [FMA:37664] synonym: "coracobrachial" EXACT [] synonym: "coracobrachialis muscle" RELATED [Wikipedia:Coracobrachialis_muscle] xref: FMA:37664 xref: MA:0002282 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Coracobrachialis.png/200px-Coracobrachialis.png xref: ncithesaurus:Coracobrachialis is_a: UBERON:0004255 ! forelimb stylopod muscle [Term] id: UBERON:0001506 name: brachialis namespace: uberon alt_id: UBERON:FMA_37667-MA_0002271 def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [Wikipedia:Brachialis_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Casserio's muscle" EXACT [] synonym: "brachialis anticus muscle" RELATED [Wikipedia:Brachialis_muscle] synonym: "brachialis muscle" RELATED [Wikipedia:Brachialis_muscle] xref: EHDAA2:0000181 xref: EHDAA:8281 xref: EMAPA:19068 xref: EMAPA:19109 xref: FMA:37667 xref: MA:0002271 xref: VHOG:0001026 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Brachialis.png/200px-Brachialis.png xref: ncithesaurus:Brachialis is_a: UBERON:0001499 ! muscle of arm [Term] id: UBERON:0001507 name: biceps brachii namespace: uberon alt_id: UBERON:FMA_37670-MA_0002269 def: "In human anatomy, the biceps brachii is a muscle located on the upper arm. The biceps has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [Wikipedia:Biceps_brachii_muscle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "biceps" BROAD [EHDAA2:0000167] synonym: "biceps brachii %26 brachialis muscles" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps brachii muscle" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps cubiti" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps muscle" RELATED [Wikipedia:Biceps_brachii_muscle] xref: BTO:0003419 xref: EHDAA2:0000167 xref: EHDAA:8279 xref: EMAPA:19067 xref: EMAPA:19108 xref: FMA:37670 xref: MA:0002269 xref: SCTID:265802004 xref: VHOG:0000861 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Biceps_%28PSF%29.jpg/200px-Biceps_%28PSF%29.jpg xref: ncithesaurus:Biceps is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004255 ! forelimb stylopod muscle relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0001508 name: arch of aorta namespace: uberon alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059 def: "begins at the level of the upper border of the second sternocostal articulation of the right side, and runs at first upward, backward, and to the left in front of the trachea; it is then directed backward on the left side of the trachea and finally passes downward on the left side of the body of the fourth thoracic vertebra, at the lower border of which it becomes continuous with the descending aorta[WP]." [Wikipedia:Arch_of_aorta] comment: Do not confuse with aortic arch subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "aortic arch" RELATED [FMA:3768] synonym: "arcus aortae" EXACT [FMA:3768, FMA:TA] synonym: "thoracic aorta" RELATED [GAID:471] xref: BTO:0000157 xref: EFO:0002526 xref: EHDAA2:0000132 xref: EMAPA:17613 xref: EMAPA:18602 xref: FMA:3768 xref: GAID:471 xref: MA:0000475 xref: SCTID:181300001 xref: VHOG:0001196 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001515 ! thoracic aorta is_a: UBERON:0005800 ! segment of aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0001509 name: triceps brachii namespace: uberon alt_id: UBERON:FMA_37688-MA_0002399 def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [Wikipedia:Triceps_brachii] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "triceps" EXACT [EHDAA2:0002080] synonym: "triceps brachii" RELATED [Wikipedia:Triceps_brachii_muscle] synonym: "triceps muscle" RELATED [Wikipedia:Triceps_brachii_muscle] xref: EHDAA2:0002080 xref: EHDAA:8287 xref: EMAPA:19070 xref: FMA:37688 xref: MA:0002399 xref: SCTID:181623009 xref: VHOG:0000851 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Triceps_brachii.png/200px-Triceps_brachii.png xref: ncithesaurus:Triceps is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004255 ! forelimb stylopod muscle relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0001510 name: skin of knee namespace: uberon alt_id: UBERON:FMA_37800-MA_0000668 def: "A zone of skin that is part of a knee [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "knee skin" EXACT [] synonym: "knee zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of knee" EXACT [OBOL:automatic] xref: EMAPA:18151 xref: FMA:37800 xref: MA:0000668 xref: SCTID:181552001 xref: ncithesaurus:Knee_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0001511 ! skin of leg relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001511 name: skin of leg namespace: uberon alt_id: UBERON:FMA_37828-MA_0000674 def: "A zone of skin that is part of a leg [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "leg skin" EXACT [] synonym: "leg zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of leg" EXACT [OBOL:automatic] xref: EMAPA:18156 xref: EMAPA:18159 xref: FMA:37828 xref: MA:0000674 xref: ncithesaurus:Leg_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003532 ! hindlimb skin [Term] id: UBERON:0001512 name: skin of ankle namespace: uberon alt_id: UBERON:FMA_37831-MA_0000641 def: "A zone of skin that is part of an ankle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "ankle skin" EXACT [] synonym: "ankle zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of ankle" EXACT [OBOL:automatic] xref: FMA:37831 xref: MA:0000641 xref: SCTID:181560000 xref: ncithesaurus:Ankle_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003532 ! hindlimb skin relationship: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0001513 name: skin of foot namespace: uberon alt_id: UBERON:FMA_37834-MA_0000654 def: "A zone of skin that is part of a foot [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autopod of hind limb zone of skin" EXACT [OBOL:automatic] synonym: "autopod of hindlimb zone of skin" EXACT [OBOL:automatic] synonym: "autopod of inferior member zone of skin" EXACT [OBOL:automatic] synonym: "autopod of lower extremity zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity zone of skin" EXACT [OBOL:automatic] synonym: "foot skin" EXACT [] synonym: "foot zone of skin" EXACT [OBOL:automatic] synonym: "hind limb autopod zone of skin" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "hindlimb autopod zone of skin" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "inferior member autopod zone of skin" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "lower extremity autopod zone of skin" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "skin of hind-paw" NARROW SENSU [EMAPA:18504] synonym: "terminal segment of free lower limb zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of hind limb" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of inferior member" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "zone of skin of foot" EXACT [OBOL:automatic] synonym: "zone of skin of hind limb autopod" EXACT [OBOL:automatic] synonym: "zone of skin of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of hindlimb autopod" EXACT [OBOL:automatic] synonym: "zone of skin of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of inferior member autopod" EXACT [OBOL:automatic] synonym: "zone of skin of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of lower extremity autopod" EXACT [OBOL:automatic] synonym: "zone of skin of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of terminal segment of free lower limb" EXACT [OBOL:automatic] xref: EMAPA:18504 xref: FMA:37834 xref: MA:0000654 xref: SCTID:181529000 xref: ncithesaurus:Foot_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003532 ! hindlimb skin relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001514 name: descending aorta namespace: uberon alt_id: UBERON:FMA_3784-MA_0002571 def: " The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [GO:0035906, Wikipedia:Descending_aorta] comment: Development notes: results from fusion of left and right dorsal aortae subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "aorta descendens" RELATED [Wikipedia:Descending_aorta] synonym: "pars descendens aortae" EXACT [FMA:3784] xref: EMAPA:18605 xref: FMA:3784 xref: MA:0002571 xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA xref: SCTID:261399002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Descending_Aorta is_a: UBERON:0005800 ! segment of aorta relationship: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001515 name: thoracic aorta namespace: uberon alt_id: UBERON:FMA_3786-MA_0002569 def: "The thoracic aorta is contained in the posterior mediastinal cavity. It begins at the lower border of the fourth thoracic vertebra where it is continuous with the aortic arch, and ends in front of the lower border of the twelfth thoracic vertebra, at the aortic hiatus in the diaphragm where it becomes the abdominal aorta. At its commencement, it is situated on the left of the vertebral column; it approaches the median line as it descends; and, at its termination, lies directly in front of the column. The vessel describes a curve which is concave forward; as the branches given off from it are small, its diminution in size is insignificant. It has a radius of approximately 1.16 cm. [WP,unvetted]." [Wikipedia:Thoracic_aorta] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "thoracic part of aorta" EXACT [] xref: BTO:0000157 xref: EFO:0002525 xref: EMAPA:18603 xref: FMA:3786 xref: GAID:471 xref: MA:0002569 xref: MESH:A.07.231.114.056.372 xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA xref: SCTID:302510009 xref: galen:ThoracicAorta xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png xref: ncithesaurus:Thoracic_Aorta is_a: UBERON:0005800 ! segment of aorta [Term] id: UBERON:0001516 name: abdominal aorta namespace: uberon alt_id: UBERON:FMA_3789-MA_0000474 def: "Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [BTO:0002976, Wikipedia:Abdominal_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "abdominal part of aorta" EXACT [BTO:0002976, FMA:3789] synonym: "aorta abdominalis" RELATED [BTO:0002976] synonym: "descending abdominal aorta" EXACT [FMA:3789] synonym: "pars abdominalis aortae" EXACT [BTO:0002976, FMA:3789] xref: BTO:0002976 xref: EFO:0002524 xref: EMAPA:17856 xref: EMAPA:18607 xref: FMA:3789 xref: GAID:470 xref: MA:0000474 xref: MESH:A.07.231.114.056.205 xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA xref: SCTID:244231007 xref: galen:AbdominalAorta xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png xref: ncithesaurus:Abdominal_Aorta is_a: UBERON:0005800 ! segment of aorta relationship: part_of UBERON:0001514 ! descending aorta [Term] id: UBERON:0001517 name: skin of elbow namespace: uberon alt_id: UBERON:0003399 alt_id: UBERON:FMA_38250-MA_0000610 def: "A zone of skin that is part of a elbow [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "cubital region zone of skin" EXACT [OBOL:automatic] synonym: "elbow skin" EXACT [] synonym: "elbow zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of cubital region" EXACT [OBOL:automatic] synonym: "zone of skin of elbow" EXACT [OBOL:automatic] xref: EMAPA:18051 xref: FMA:38250 xref: MA:0000610 xref: SCTID:181534001 xref: ncithesaurus:Elbow_Skin is_a: UBERON:0002427 ! arm skin relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0001518 name: skin of wrist namespace: uberon alt_id: UBERON:FMA_38280-MA_0000638 def: "A zone of skin that is part of a wrist [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "carpal region zone of skin" EXACT [OBOL:automatic] synonym: "wrist skin" EXACT [] synonym: "wrist zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of carpal region" EXACT [OBOL:automatic] synonym: "zone of skin of wrist" EXACT [OBOL:automatic] xref: FMA:38280 xref: MA:0000638 xref: SCTID:181540008 xref: ncithesaurus:Wrist_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003531 ! forelimb skin relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001519 name: skin of hand namespace: uberon alt_id: UBERON:FMA_38295-MA_0000630 def: "A zone of skin that is part of a hand [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arm autopod zone of skin" EXACT [OBOL:automatic] synonym: "arm distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "autopod of arm zone of skin" EXACT [OBOL:automatic] synonym: "autopod of brachial region zone of skin" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic] synonym: "brachial region autopod zone of skin" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic] synonym: "hand skin" EXACT [] synonym: "hand zone of skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod zone of skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "skin of fore-paw" NARROW SENSU [EMAPA:18486] synonym: "terminal segment of free upper limb zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of arm autopod" EXACT [OBOL:automatic] synonym: "zone of skin of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of arm" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of brachial region" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "zone of skin of brachial region autopod" EXACT [OBOL:automatic] synonym: "zone of skin of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "zone of skin of hand" EXACT [OBOL:automatic] synonym: "zone of skin of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "zone of skin of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of terminal segment of free upper limb" EXACT [OBOL:automatic] xref: EMAPA:18486 xref: FMA:38295 xref: MA:0000630 xref: SCTID:181527003 xref: ncithesaurus:Hand_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003531 ! forelimb skin [Term] id: UBERON:0001520 name: pronator teres namespace: uberon alt_id: UBERON:FMA_38450-MA_0002357 def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [Wikipedia:Pronator_teres] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:38450 xref: MA:0002357 xref: SCTID:302514000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Pronator-teres.png/200px-Pronator-teres.png xref: ncithesaurus:Pronator_Teres is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001521 name: flexor carpi radialis namespace: uberon alt_id: UBERON:FMA_38459-MA_0002297 def: "In anatomy, flexor carpi radialis is a muscle of the human forearm that acts to flex and abduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_radialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:38459 xref: MA:0002297 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Flexor-carpi-radialis.png/200px-Flexor-carpi-radialis.png xref: ncithesaurus:Flexor_Carpi_Radialis is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004255 ! forelimb stylopod muscle relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0001522 name: flexor carpi ulnaris namespace: uberon alt_id: UBERON:FMA_38465-MA_0002298 def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_ulnaris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:38465 xref: MA:0002298 xref: SCTID:244985003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/FCU.png/200px-FCU.png xref: ncithesaurus:Flexor_Carpi_Ulnaris is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004255 ! forelimb stylopod muscle relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0001523 name: flexor digitorum profundus namespace: uberon alt_id: UBERON:FMA_38478-MA_0002300 def: "In human anatomy, the flexor digitorum profundus is a muscle in the forearm that flexes the fingers. It is considered to be an extrinsic muscle because its action is at a different location than the main body of the muscle. Flexor digitorum profundus, along with flexor digitorum superficialis have long tendons that run down the arm and through the carpal tunnel and attach to the palmar side of the phalanges of the fingers. This muscle originates from the upper 3/4ths anterior and medial side of the ulna. Flexor digitorum profundus lies deep to superficialis, but it attaches more distally. To get around this problem profundus's tendons go through the tendons of superficialis, and end up attaching to the distal phalanx. [WP,unvetted]." [Wikipedia:Flexor_digitorum_profundus] comment: Note that in EMAPA, this is part of the leg, which is presumably a mistake subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001246 xref: EMAPA:19319 xref: FMA:38478 xref: MA:0002300 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Flexor-digitorum-profundis.png/200px-Flexor-digitorum-profundis.png xref: ncithesaurus:Flexor_Digitorum_Profundus is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004255 ! forelimb stylopod muscle relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0001524 name: extensor carpi radialis longus namespace: uberon alt_id: UBERON:FMA_38494-MA_0002291 def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:38494 xref: MA:0002291 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/ECR-longus.png/200px-ECR-longus.png xref: ncithesaurus:Extensor_Carpi_Radialis_Longus is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001525 name: extensor carpi radialis brevis namespace: uberon alt_id: UBERON:FMA_38497-MA_0002290 def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_brevis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:38497 xref: MA:0002290 xref: ncithesaurus:Extensor_Carpi_Radialis_Brevis is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001526 name: extensor carpi ulnaris namespace: uberon alt_id: UBERON:FMA_38506-MA_0002292 def: "Extensor carpi ulnaris is a muscle located in the human forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP,unvetted]." [Wikipedia:Extensor_carpi_ulnaris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:38506 xref: MA:0002292 xref: SCTID:244992008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray418.png/200px-Gray418.png xref: ncithesaurus:Extensor_Carpi_Ulnaris is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0003662 ! forelimb muscle relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001527 name: abductor pollicis longus namespace: uberon alt_id: UBERON:FMA_38515-MA_0002266 def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [Wikipedia:Abductor_pollicis_longus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "abductor pollicis longus muscle" RELATED [Wikipedia:Abductor_pollicis_longus_muscle] xref: FMA:38515 xref: MA:0002266 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray1231.png/200px-Gray1231.png xref: ncithesaurus:Abductor_Pollicis_Longus is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001528 name: radio-ulnar joint namespace: uberon alt_id: UBERON:FMA_38863-MA_0000462 def: "The forearm is the structure and distal region of the upper limb, between the elbow and the wrist.. The term forearm is used in anatomy to distinguish it from the arm which is often misused to describe the entire appendage of the upper limb and technically means only the region of the upper arm whereas the lower 'arm' is called the forearm. It is homologous to the leg that lies between the knee and the ankle joints. [WP,unvetted]." [Wikipedia:Radio-ulnar_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "radioulnar joint" EXACT [] xref: EMAPA:19206 xref: FMA:38863 xref: MA:0000462 xref: OpenCyc:Mx4rvlO2nJwpEbGdrcN5Y29ycA xref: SCTID:264167003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png is_a: UBERON:0001491 ! wrist joint [Term] id: UBERON:0001529 name: brachiocephalic artery namespace: uberon alt_id: UBERON:FMA_3932-MA_0001922 def: "The brachiocephalic artery (or brachiocephalic trunk or innominate artery) is an artery of the mediastinum that supplies blood to the right arm and the head and neck. It is the first branch of the aortic arch, and soon after it emerges, the brachiocephalic artery divides into the right common carotid artery and the right subclavian artery. There is no brachiocephalic artery for the left side of the body. The left common carotid, and the left subclavian artery, come directly off the aortic arch. However, there are two brachiocephalic veins. [WP,unvetted]." [Wikipedia:Brachiocephalic_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brachiocephalic trunk" EXACT [MA:0001922] synonym: "innominate artery" EXACT [] synonym: "truncus brachiocephalicus" EXACT [FMA:3932, FMA:TA] xref: EFO:0002550 xref: EHDAA2:0000835 xref: EMAPA:17615 xref: FMA:3932 xref: GAID:476 xref: MA:0001922 xref: MESH:A.07.231.114.145 xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA xref: SCTID:244244002 xref: galen:BrachioCephalicArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Innominate_Artery is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0007204 ! brachiocephalic vasculature [Term] id: UBERON:0001530 name: common carotid artery plus branches namespace: uberon alt_id: UBERON:FMA_3939-ZFA_0000097 def: "A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]." [Wikipedia:Common_carotid_artery] comment: Editor notes: we follow the FMA and treat the artery as a tree-structure - here we include the internal and external as parts. For the part that excludes the branches, see 'trunk of common carotid artery'. Development notes: in birds and reptiles, develops from arch III and parts of ventral and dorsal aortae subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "carotid artery" BROAD [FMA:3939] synonym: "carotid artery system" EXACT [EHDAA2:0000217] synonym: "common carotid artery" EXACT INCONSISTENT [FMA:3939] synonym: "trunk of common carotid tree" EXACT [FMA:3939] xref: EHDAA2:0000217 xref: EHDAA:7331 xref: EMAPA:17855 xref: FMA:3939 xref: GAID:479 xref: MA:0001926 xref: MESH:A.07.231.114.186.200 xref: SCTID:362041005 xref: VHOG:0000272 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Common_Carotid_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0005396 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! carotid artery segment [Term] id: UBERON:0001531 name: right common carotid artery plus branches namespace: uberon alt_id: UBERON:FMA_3941-MA_0001928 def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Right_common_carotid_artery] comment: Editor notes: placement of the MA class here is not strictly correct, as the MA class does not include the branches subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "trunk of right common carotid tree" EXACT [FMA:3941] xref: FMA:3941 xref: MA:0001928 xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA xref: SCTID:362042003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Right_Common_Carotid_Artery is_a: UBERON:0001530 ! common carotid artery plus branches [Term] id: UBERON:0001532 name: internal carotid artery namespace: uberon alt_id: UBERON:FMA_3947-MA_0001930-XAO_0000366-ZFA_0005081 def: "In human anatomy, the internal carotid artery is a major artery of the head and neck that helps supply blood to the brain. [WP,unvetted]." [Wikipedia:Internal_carotid_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ICA" RELATED [] xref: AAO:0011054 xref: BTO:0004697 xref: EFO:0001952 xref: EHDAA2:0000873 xref: EHDAA:408 xref: EHDAA:6389 xref: EMAPA:16328 xref: EMAPA:18612 xref: FMA:3947 xref: GAID:481 xref: MA:0001930 xref: MESH:A.07.231.114.186.200.230 xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA xref: SCTID:362045001 xref: TAO:0005081 xref: VHOG:0000267 xref: XAO:0000366 xref: ZFA:0005081 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png xref: ncithesaurus:Internal_Carotid_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005396 ! carotid artery segment is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001530 ! common carotid artery plus branches relationship: develops_from UBERON:0005805 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dorsal aorta [Term] id: UBERON:0001533 name: subclavian artery namespace: uberon alt_id: UBERON:FMA_3951-MA_0002045-ZFA_0005086 def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib[WP]. The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993" [Wikipedia:Subclavian_artery, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "PA" RELATED [] synonym: "arterial tree of upper limb" EXACT [] synonym: "pectoral artery" EXACT [] synonym: "subclavian arterial tree" EXACT [] xref: AAO:0010232 xref: EHDAA2:0001933 xref: EHDAA:4357 xref: EMAPA:17617 xref: FMA:3951 xref: GAID:511 xref: MA:0002045 xref: MESH:A.07.231.114.839 xref: OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA xref: SCTID:265790007 xref: TAO:0005086 xref: XAO:0000365 xref: ZFA:0005086 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Subclavian_Artery is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0007300 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! fore limb/fin blood vessel [Term] id: UBERON:0001534 name: right subclavian artery namespace: uberon alt_id: UBERON:FMA_3953-MA_0002047 def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Right_subclavian_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0004514 xref: FMA:3953 xref: MA:0002047 xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA xref: SCTID:244246000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Right_Subclavian_Artery is_a: UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001535 name: vertebral artery namespace: uberon alt_id: UBERON:FMA_3956-MA_0002077-ZFA_0005033 def: "The vertebral arteries are branches of the subclavian arteries. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Vertebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: EHDAA2:0002192 xref: EHDAA:5328 xref: EMAPA:17314 xref: FMA:3956 xref: GAID:518 xref: MA:0002077 xref: MESH:A.07.231.114.955 xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA xref: SCTID:181323003 xref: TAO:0005033 xref: VHOG:0000263 xref: ZFA:0005033 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Vertebral_artery.png/200px-Vertebral_artery.png xref: ncithesaurus:Vertebral_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: part_of UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001536 name: left common carotid artery plus branches namespace: uberon alt_id: UBERON:FMA_4058-MA_0001927 def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Left_common_carotid_artery] comment: Editor notes: placement of the MA class here is not strictly correct, as the MA class does not include the branches subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "trunk of left common carotid tree" EXACT [FMA:4058] xref: FMA:4058 xref: MA:0001927 xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA xref: SCTID:362043008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Left_Common_Carotid_Artery is_a: UBERON:0001530 ! common carotid artery plus branches [Term] id: UBERON:0001537 name: anterior tibial artery namespace: uberon alt_id: UBERON:FMA_43894-MA_0002574 def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [Wikipedia:Anterior_tibial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:43894 xref: MA:0002574 xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA xref: SCTID:181357006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png xref: ncithesaurus:Anterior_Tibial_Artery is_a: UBERON:0007610 ! tibial artery [Term] id: UBERON:0001538 name: posterior tibial artery namespace: uberon alt_id: UBERON:FMA_43895-MA_0002575 def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:43895 xref: MA:0002575 xref: OpenCyc:Mx4rwLSaQ5wpEbGdrcN5Y29ycA xref: SCTID:181358001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png xref: ncithesaurus:Posterior_Tibial_Artery is_a: UBERON:0007610 ! tibial artery [Term] id: UBERON:0001539 name: dorsalis pedis artery namespace: uberon alt_id: UBERON:FMA_43915-MA_0001942 def: "In human anatomy, the dorsalis pedis artery (dorsal artery of foot), is a blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [Wikipedia:Dorsalis_pedis_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria dorsalis pedis" EXACT [FMA:43915, FMA:TA] synonym: "dorsal artery of foot" EXACT [] xref: FMA:43915 xref: MA:0001942 xref: SCTID:181362007 xref: galen:DorsalisPedisArtery xref: ncithesaurus:Dorsalis_Pedis_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001540 name: peroneal artery namespace: uberon alt_id: UBERON:FMA_43921-MA_0002018 def: "In anatomy, the fibular artery (also known as the peroneal artery) supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [Wikipedia:Peroneal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteria fibularis" EXACT [FMA:43921, FMA:TA] synonym: "fibular artery" EXACT [] xref: FMA:43921 xref: MA:0002018 xref: OpenCyc:Mx4rwSO_s5wpEbGdrcN5Y29ycA xref: SCTID:181359009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Fibular_artery.png/200px-Fibular_artery.png xref: ncithesaurus:Peroneal_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! hindlimb blood vessel relationship: part_of UBERON:0001538 ! posterior tibial artery [Term] id: UBERON:0001541 name: medial plantar artery namespace: uberon alt_id: UBERON:FMA_43925-MA_0001997 def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [Wikipedia:Medial_plantar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:43925 xref: MA:0001997 xref: SCTID:181360004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png xref: ncithesaurus:Medial_Plantar_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! hindlimb blood vessel relationship: part_of UBERON:0001538 ! posterior tibial artery [Term] id: UBERON:0001542 name: inguinal lymph node namespace: uberon alt_id: UBERON:FMA_44226-MA_0000737 def: "A lymph node in the inguinal region." [Wikipedia:Inguinal_lymph_node] comment: TODO - superficial/deep subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:44226 xref: MA:0000737 xref: SCTID:181762005 xref: ncithesaurus:Inguinal_Lymph_Node is_a: UBERON:0003968 ! peripheral lymph node [Term] id: UBERON:0001543 name: popliteal lymph node namespace: uberon alt_id: UBERON:FMA_44227-MA_0000738 def: "The popliteal lymph nodes, small in size and some six or seven in number, are imbedded in the fat contained in the popliteal fossa. One lies immediately beneath the popliteal fascia, near the terminal part of the small saphenous vein, and drains the region from which this vein derives its tributaries. Another is placed between the popliteal artery and the posterior surface of the knee-joint; it receives the lymphatic vessels from the knee-joint together with those which accompany the genicular arteries. The others lie at the sides of the popliteal vessels, and receive as efferents the trunks which accompany the anterior and posterior tibial vessels. The efferents of the popliteal glands pass almost entirely alongside the femoral vessels to the deep inguinal glands, but a few may accompany the great saphenous vein, and end in the glands of the superficial subinguinal group. [WP,unvetted]." [Wikipedia:Popliteal_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:44227 xref: MA:0000738 xref: SCTID:279156002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png xref: ncithesaurus:Popliteal_Lymph_Node is_a: UBERON:0003968 ! peripheral lymph node [Term] id: UBERON:0001544 name: popliteal vein namespace: uberon alt_id: UBERON:FMA_44327-MA_0002197 def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [Wikipedia:Popliteal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:44327 xref: GAID:537 xref: MA:0002197 xref: MESH:A.07.231.908.641 xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA xref: SCTID:281065001 xref: galen:PoplitealVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png xref: ncithesaurus:Popliteal_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003232 ! epithelium of knee is_a: UBERON:0003503 ! leg blood vessel relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001545 name: anterior tibial vein namespace: uberon alt_id: UBERON:FMA_44331-MA_0002244 def: "In human anatomy, the anterior tibial vein of the lower limb carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Anterior_tibial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:44331 xref: MA:0002244 xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA xref: SCTID:281066000 xref: galen:AnteriorTibialVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Gray440_color.png/200px-Gray440_color.png xref: ncithesaurus:Anterior_Tibial_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003503 ! leg blood vessel relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001546 name: posterior tibial vein namespace: uberon alt_id: UBERON:FMA_44332-MA_0002245 def: "In anatomy, the posterior tibial vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:44332 xref: MA:0002245 xref: OpenCyc:Mx4rwA9GD5wpEbGdrcN5Y29ycA xref: SCTID:281067009 xref: galen:PosteriorTibialVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray583.png/200px-Gray583.png xref: ncithesaurus:Posterior_Tibial_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001547 name: small saphenous vein namespace: uberon alt_id: UBERON:FMA_44333-MA_0002217 def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [Wikipedia:Small_saphenous_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lesser saphenous vein" EXACT [] synonym: "short saphenous vein" EXACT [] synonym: "vena saphena parva" EXACT [FMA:44333, FMA:TA] xref: BTO:0003272 xref: FMA:44333 xref: MA:0002217 xref: SCTID:181404009 xref: galen:LesserSaphenousVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/62/Gray582.png/200px-Gray582.png xref: ncithesaurus:Short_Saphenous_Vein is_a: UBERON:0007318 ! saphenous vein [Term] id: UBERON:0001548 name: lateral marginal vein namespace: uberon alt_id: UBERON:FMA_44359-MA_0002160 comment: This class was created automatically from a combination of ontologies synonym: "lateral marginal vein of foot" EXACT [] synonym: "vena marginalis lateralis" EXACT [] synonym: "vena marginalis lateralis pedis" EXACT [FMA:44359, FMA:TA] xref: FMA:44359 xref: MA:0002160 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001549 name: dorsal metatarsal vein namespace: uberon alt_id: UBERON:FMA_44377-MA_0002105 def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [Wikipedia:Dorsal_metatarsal_veins] comment: This class was created automatically from a combination of ontologies synonym: "metatarsal vein" EXACT [] xref: FMA:44377 xref: MA:0002105 xref: ncithesaurus:Dorsal_Metatarsal_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0004564 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hindlimb digital vein [Term] id: UBERON:0001550 name: medial marginal vein namespace: uberon alt_id: UBERON:FMA_44420-MA_0002171 comment: This class was created automatically from a combination of ontologies synonym: "medial marginal vein of foot" EXACT [] synonym: "vena marginalis medialis" EXACT [] synonym: "vena marginalis medialis pedis" EXACT [FMA:44420, FMA:TA] xref: FMA:44420 xref: MA:0002171 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001551 name: sural vein namespace: uberon alt_id: UBERON:FMA_44561-MA_0002231 comment: This class was created automatically from a combination of ontologies xref: FMA:44561 xref: MA:0002231 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001552 name: arcuate artery namespace: uberon alt_id: UBERON:FMA_44594-MA_0002583 def: "One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Arcuate_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "kidney arcuate artery" EXACT [MP:0011315] xref: EMAPA:28215 xref: FMA:44594 xref: MA:0002583 xref: SCTID:244331005 is_a: UBERON:0001637 ! artery is_a: UBERON:0005268 ! renal cortex artery relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0001553 name: medial tarsal artery namespace: uberon alt_id: UBERON:FMA_44598-MA_0001998 comment: This class was created automatically from a combination of ontologies xref: FMA:44598 xref: MA:0001998 xref: SCTID:67925000 xref: ncithesaurus:Medial_Tarsal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001554 name: skin of hip namespace: uberon alt_id: UBERON:FMA_45282-MA_0000658 def: "A zone of skin that is part of a hip [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "hip region zone of skin" EXACT [OBOL:automatic] synonym: "hip skin" EXACT [] synonym: "hip zone of skin" EXACT [OBOL:automatic] synonym: "regio coxae zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of hip" EXACT [OBOL:automatic] synonym: "zone of skin of hip region" EXACT [OBOL:automatic] synonym: "zone of skin of regio coxae" EXACT [OBOL:automatic] xref: EMAPA:18148 xref: FMA:45282 xref: MA:0000658 xref: SCTID:181518004 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003532 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hindlimb skin relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0001555 name: digestive tract namespace: uberon alt_id: UBERON:FMA_45615-MA_0000917-ZFA_0000112 def: "Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk:Human_gastrointestinal_tract, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855] comment: GO says gut is region of DT, from intestines to anus. ZFA treats as synonym for alimentary canal, and treats it as the sum of DT + organs (ZF has no term from stomach). GO says intestines to anus (excludes stomach and esophagus). MA appears to agree with GO (stomach and esophagus are not parts). FMA includes stomach and esophagus as parts of gut -- the FMA divides gut into lower and upper GI tract; it's not clear if this is exhaustive (small intestine is in neither), but lower GI tract may correspond better to the GO definition. NOTE: GO now changed, see sf id in def xref. Note that FMA also has a term 'gastrointestinal tract', but this includes the liver subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "alimentary canal" EXACT [] synonym: "digestive tube" RELATED [] synonym: "enteric tract" EXACT [ZFA:0000112] synonym: "gut" BROAD [] synonym: "gut tube" RELATED [] xref: AAO:0010023 xref: BILA:0000083 xref: BTO:0000511 xref: BTO:0000545 xref: EHDAA2:0000726 xref: EHDAA:518 xref: EMAPA:16247 xref: FBbt:00003125 xref: FMA:45615 xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA xref: TAO:0000112 xref: TGMA:0001819 xref: VHOG:0000309 xref: WBbt:0005743 xref: ZFA:0000112 xref: galen:AlimentaryTract is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0001556 name: lower urinary tract namespace: uberon alt_id: UBERON:FMA_45659-MA_0002636 def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." [] comment: TODO - add superclass urinary tract? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:45659 xref: MA:0002636 xref: SCTID:181420004 xref: galen:LowerUrinaryTract is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0001557 name: upper respiratory tract namespace: uberon alt_id: UBERON:FMA_45661-MA_0000442 def: "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0002136 xref: EMAPA:17669 xref: FMA:45661 xref: MA:0000442 xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ xref: SCTID:361381009 xref: VHOG:0000406 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg is_a: UBERON:0000072 ! segment of respiratory tract [Term] id: UBERON:0001558 name: lower respiratory tract namespace: uberon alt_id: UBERON:FMA_45662-MA_0000435 def: "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0001036 xref: EMAPA:16738 xref: FMA:45662 xref: MA:0000435 xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g xref: SCTID:281488008 xref: VHOG:0000382 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg is_a: UBERON:0000072 ! segment of respiratory tract [Term] id: UBERON:0001559 name: head of organ namespace: uberon alt_id: UBERON:FMA_45729-MA_0000581 is_obsolete: true comment: incorrect grouping synonym: "head organ" EXACT [MA:0000581] synonym: "organ head" EXACT [] xref: FMA:45729 xref: MA:0000581 [Term] id: UBERON:0001560 name: neck of organ namespace: uberon alt_id: UBERON:FMA_45733-MA_0000589 synonym: "organ neck" EXACT [] xref: FMA:45733 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0001561 name: subcostal artery namespace: uberon alt_id: UBERON:FMA_4613-MA_0002048 def: "The subcostal arteries, so named because they lie below the last ribs, constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:19097 xref: FMA:4613 xref: MA:0002048 xref: SCTID:244243008 xref: ncithesaurus:Subcostal_Artery is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0001562 name: digastric namespace: uberon alt_id: UBERON:FMA_46291-MA_0002288 def: "The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]." [Wikipedia:Digastric_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "digastric muscle" RELATED [Wikipedia:Digastric_muscle] synonym: "musculus digastricus" RELATED [Wikipedia:Digastric_muscle] xref: EMAPA:25134 xref: FMA:46291 xref: MA:0002288 xref: SCTID:244825002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Digastricus.png/200px-Digastricus.png xref: ncithesaurus:Digastric_Muscle is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001563 name: longus capitis namespace: uberon alt_id: UBERON:FMA_46308-MA_0002340 def: "The longus capitis (rectus capitis anticus major), broad and thick above, narrow below, arises by four tendinous slips, from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae, and ascends, converging toward its fellow of the opposite side, to be inserted into the inferior surface of the basilar part of the occipital bone. It is innervated by a branch of cervical plexus. [WP,unvetted]." [Wikipedia:Longus_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "longus capitus muscle" RELATED [Wikipedia:Longus_capitis_muscle] synonym: "rectus capitis anticus major" RELATED [Wikipedia:Longus_capitis_muscle] xref: EMAPA:25131 xref: FMA:46308 xref: MA:0002340 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Longus_capitis.png/200px-Longus_capitis.png xref: ncithesaurus:Longus_Capitis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001564 name: mylohyoid namespace: uberon alt_id: UBERON:FMA_46320-MA_0002344 def: "The mylohyoid muscle is a muscle running from the mandible to the hyoid bone, forming the floor of the oral cavity. These muscles are mesodermal in origin." [Wikipedia:Mylohyoid_muscle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus mylohyoideus" RELATED [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoid muscle" RELATED [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoideus" RELATED [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoideus muscle" RELATED [Wikipedia:Mylohyoid_muscle] xref: FMA:46320 xref: MA:0002344 xref: ncithesaurus:Mylohyoid is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001565 name: geniohyoid namespace: uberon alt_id: UBERON:FMA_46325-MA_0002308 def: "The Geniohyoid muscle is a narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]." [Wikipedia:Geniohyoid_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "geniohyoid muscle" RELATED [Wikipedia:Geniohyoid_muscle] synonym: "geniohyoideus" RELATED [Wikipedia:Geniohyoid_muscle] synonym: "geniohyoideus muscle" RELATED [Wikipedia:Geniohyoid_muscle] xref: AAO:0010655 xref: FMA:46325 xref: MA:0002308 xref: XAO:0004127 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Geniohyoid_muscle.PNG/200px-Geniohyoid_muscle.PNG xref: ncithesaurus:Geniohyoid is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0008777 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hypaxial musclulature [Term] id: UBERON:0001566 name: cricothyroid muscle namespace: uberon alt_id: UBERON:FMA_46417-MA_0002284 def: "The cricothyroid muscle attaches to the anterolateral aspect of the cricoid and the inferior cornu and lower lamina of the thyroid cartilage, tilting the thyroid forwards and tensing the vocal cords. It is the only laryngeal muscle supplied by the external branch of the superior laryngeal nerve (rather than the recurrent laryngeal nerve). [WP,unvetted]." [Wikipedia:Cricothyroid_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cricothyroid" EXACT [] synonym: "musculus cricothyroideus" EXACT [FMA:46417, FMA:TA] xref: EMAPA:19270 xref: FMA:46417 xref: MA:0002284 xref: SCTID:244809007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Musculuscricothyreoideus.png/200px-Musculuscricothyreoideus.png xref: ncithesaurus:Cricothyroid_Muscle is_a: UBERON:0006328 ! laryngeal intrinsic muscle [Term] id: UBERON:0001567 name: cheek namespace: uberon alt_id: UBERON:FMA_46476-MA_0002475 def: "Cheeks constitute the area of the face below the eyes and between the nose and the left or right ear. It is fleshy in humans and other mammals, the skin being suspended by the chin and the jaws, and forming the lateral wall of the human mouth, visibly touching the cheekbone below the eye. In vertebrates, markings on the cheek area (malar stripes/spots/... ), particularly immediately beneath the eye, often serve as important distinguishing features between species or individuals. 'Buccal' means relating to the cheek. In humans, the region is innervated by the buccal nerve. The inside of the cheek (forming part of the mouth cavity) is lined with a mucous membrane. It is the most common location from which a DNA sample can be taken (during a cheek swab). The cheeks are covered externally by hairy skin, and internally by stratified squamous epithelium. This is mostly smooth, but may have aborally directed papillae . The mucosa is supplied with secretions from the Buccal glands, which are arranged in superior and inferior groups. In carnivores, the superior buccal gland is large and discrete: the Zygomatic gland. During mastication (chewing), the cheeks and tongue between them serve to keep the food between the teeth. [WP,unvetted]." [Wikipedia:Cheek] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cheek" BROAD [] xref: BTO:0001754 xref: FMA:46476 xref: GAID:65 xref: MA:0002475 xref: MESH:A.01.456.505.173 xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA xref: SCTID:182325008 xref: galen:Cheek xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Chica_cachetona.jpg/200px-Chica_cachetona.jpg xref: ncithesaurus:Cheek is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0004089 ! midface [Term] id: UBERON:0001568 name: muscle of larynx namespace: uberon alt_id: UBERON:FMA_46562-MA_0001768 def: "the muscles associated with the larynx." [MP:0002263] comment: This class was created automatically from a combination of ontologies synonym: "laryngeal muscle" EXACT [] synonym: "larynx muscle" EXACT [] synonym: "larynx muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of larynx" EXACT [OBOL:automatic] xref: BTO:0001626 xref: FMA:46562 xref: GAID:144 xref: MA:0001768 xref: MESH:A.02.633.567.500 xref: SCTID:181744001 xref: ncithesaurus:Laryngeal_Muscle is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001569 name: constrictor muscle of pharynx namespace: uberon alt_id: UBERON:FMA_46620-MA_0002278 def: "The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]." [Wikipedia:Constrictor_muscle_of_pharynx] comment: TODO - evaluate taxonomic specificity - functional definition? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pharyngeal constrictor muscle" EXACT [] xref: EMAPA:18964 xref: FMA:46620 xref: MA:0002278 xref: SCTID:244799007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Musculusconstrictorpharyngissuperior.png/200px-Musculusconstrictorpharyngissuperior.png is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: UBERON:0001570 name: inferior pharyngeal constrictor namespace: uberon alt_id: UBERON:FMA_46623-MA_0002279 def: "The Inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "constrictor muscle of pharynx inferior" EXACT [] synonym: "inferior constrictor" EXACT [] synonym: "inferior constrictor of pharynx" EXACT [] synonym: "inferior constrictor pharyngeus" EXACT [] synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:46623, FMA:TA] xref: FMA:46623 xref: MA:0002279 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Musculusconstrictorpharyngisinferior.png/200px-Musculusconstrictorpharyngisinferior.png is_a: UBERON:0001569 ! constrictor muscle of pharynx [Term] id: UBERON:0001571 name: genioglossus namespace: uberon alt_id: UBERON:FMA_46690-MA_0002307 def: "The genioglossus is a muscle of the human body which runs from the chin to the tongue. [WP,unvetted]." [Wikipedia:Genioglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010660 xref: EHDAA2:0000704 xref: EHDAA:9150 xref: EMAPA:18276 xref: EMAPA:18881 xref: FMA:46690 xref: MA:0002307 xref: VHOG:0000847 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Genioglossus.png/200px-Genioglossus.png xref: ncithesaurus:Genioglossus is_a: UBERON:0001575 ! extrinsic muscle of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001572 name: hyoglossus namespace: uberon alt_id: UBERON:FMA_46691-MA_0002317 def: "The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]." [Wikipedia:Hyoglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010663 xref: EMAPA:18277 xref: EMAPA:18882 xref: FMA:46691 xref: MA:0002317 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Hyoglossus.png/200px-Hyoglossus.png is_a: UBERON:0001575 ! extrinsic muscle of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001573 name: styloglossus namespace: uberon alt_id: UBERON:FMA_46692-MA_0002387 def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:18279 xref: EMAPA:18884 xref: FMA:46692 xref: MA:0002387 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Styloglossus.png/200px-Styloglossus.png xref: ncithesaurus:Styloglossus is_a: UBERON:0001575 ! extrinsic muscle of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001574 name: palatoglossus namespace: uberon alt_id: UBERON:FMA_46697-MA_0002351 def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguC&. [WP,unvetted]." [Wikipedia:Palatoglossus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "palatoglossal muscle" EXACT [] xref: EMAPA:18278 xref: EMAPA:18883 xref: FMA:46697 xref: MA:0002351 xref: SCTID:244783001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray1028.png/200px-Gray1028.png is_a: UBERON:0003682 ! palatal muscle [Term] id: UBERON:0001575 name: extrinsic muscle of tongue namespace: uberon alt_id: UBERON:FMA_46699-MA_0002296 comment: This class was created automatically from a combination of ontologies synonym: "extrinsic tongue muscle" EXACT [] xref: EHDAA2:0002063 xref: EHDAA:9148 xref: FMA:46699 xref: MA:0002296 xref: SCTID:244782006 xref: VHOG:0000825 is_a: UBERON:0000378 ! tongue muscle [Term] id: UBERON:0001576 name: intrinsic muscle of tongue namespace: uberon alt_id: UBERON:FMA_46701-MA_0002327 comment: This class was created automatically from a combination of ontologies synonym: "intrinsic lingual muscle" EXACT [] synonym: "intrinsic tongue muscle" EXACT [] xref: EHDAA2:0002064 xref: EHDAA:9152 xref: FMA:46701 xref: MA:0002327 xref: SCTID:244788005 xref: VHOG:0000748 is_a: UBERON:0000378 ! tongue muscle [Term] id: UBERON:0001577 name: muscle of face namespace: uberon alt_id: UBERON:FMA_46751-XAO_0001013 def: "The facial muscles are a group of striated muscles innervated by the facial nerve that, among other things, control facial expression. These muscles are also called mimetic muscles. [WP,unvetted]." [Wikipedia:Facial_muscle] comment: Check the MA class cranial/facial muscle subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "face muscle" EXACT [] synonym: "face muscle organ" EXACT [OBOL:automatic] synonym: "facial muscle" EXACT [] synonym: "muscle organ of face" EXACT [OBOL:automatic] xref: EMAPA:25133 xref: FMA:46751 xref: GAID:143 xref: MA:0000579 xref: MESH:A.02.633.567.400 xref: SCTID:25903009 xref: XAO:0001013 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray378.png/200px-Gray378.png xref: ncithesaurus:Facial_Muscle is_a: UBERON:0002376 ! muscle of head relationship: part_of UBERON:0004473 ! musculature of face [Term] id: UBERON:0001578 name: orbicularis oculi namespace: uberon alt_id: UBERON:FMA_46779-MA_0001254 def: "The 'orbicularis oculi' is a muscle in the face that closes the eyelids. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebrC&, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphC). The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]." [Wikipedia:Orbicularis_oculi] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:46779 xref: MA:0001254 xref: SCTID:244726006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray379.png/200px-Gray379.png xref: ncithesaurus:Orbicularis_Oculi is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001577 ! muscle of face is_a: UBERON:0003660 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! eyelid muscle relationship: part_of UBERON:0001601 ! extra-ocular muscle [Term] id: UBERON:0001579 name: olfactory nerve namespace: uberon alt_id: UBERON:FMA_46787-MA_0001096-XAO_0000426-ZFA_0000249 def: "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb. The olfactory nerve supplies the nasal organ." [ISBN:0471209627, Wikipedia:Olfactory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-I" RELATED [] synonym: "Olfactory nerve [I]" EXACT [] synonym: "cranial nerve I" RELATED [] synonym: "fila olfactoria" RELATED [BTO:0003648] synonym: "first cranial nerve" EXACT [] synonym: "nerve of smell" RELATED [BTO:0003648] synonym: "nervus olfactorius" RELATED [BTO:0003648] synonym: "nervus olfactorius [i]" EXACT [FMA:46787, FMA:TA] synonym: "olfactory I" EXACT [EHDAA2:0001293] synonym: "olfactory fila" RELATED [BTO:0003648] synonym: "olfactory i nerve" EXACT [] xref: AAO:0010088 xref: BTO:0003648 xref: EHDAA2:0001293 xref: EHDAA:6672 xref: EMAPA:17797 xref: FMA:46787 xref: GAID:830 xref: MA:0001096 xref: MESH:A.08.800.800.120.640 xref: NIF_GrossAnatomy:birnlex_1319 xref: OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA xref: SCTID:180937006 xref: TAO:0000249 xref: VHOG:0000703 xref: XAO:0000426 xref: ZFA:0000249 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray771.png/200px-Gray771.png xref: ncithesaurus:Olfactory_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory system relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! olfactory system [Term] id: UBERON:0001580 name: levator labii superioris namespace: uberon alt_id: UBERON:FMA_46805-MA_0002333 def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [Wikipedia:Levator_labii_superioris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:46805 xref: MA:0002333 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/Levator_labii_superioris.png/200px-Levator_labii_superioris.png xref: ncithesaurus:Levator_Labii_Superioris is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001581 name: depressor labii inferioris namespace: uberon alt_id: UBERON:FMA_46816-MA_0002287 def: "The depressor labii inferioris (or quadratus labii inferioris) is a facial muscle that helps lower the bottom lip. [WP,unvetted]." [Wikipedia:Depressor_labii_inferioris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:46816 xref: MA:0002287 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Depressor_labii_inferioris.png/200px-Depressor_labii_inferioris.png xref: ncithesaurus:Depressor_Labii_Inferioris is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001582 name: buccinator namespace: uberon alt_id: UBERON:FMA_46834-MA_0002272 def: "." [Wikipedia:Buccinator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:46834 xref: MA:0002272 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Buccinator.jpg/200px-Buccinator.jpg xref: ncithesaurus:Buccinator is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001583 name: extrinsic auricular muscle namespace: uberon alt_id: UBERON:FMA_46854-MA_0001230 comment: This class was created automatically from a combination of ontologies xref: FMA:46854 xref: MA:0001230 is_a: UBERON:0001595 ! auricular muscle [Term] id: UBERON:0001584 name: left subclavian artery namespace: uberon alt_id: UBERON:FMA_4694-MA_0002046 def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Left_subclavian_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:4694 xref: MA:0002046 xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA xref: SCTID:244245001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: ncithesaurus:Left_Subclavian_Artery is_a: UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001585 name: anterior vena cava namespace: uberon alt_id: UBERON:FMA_4720-MA_0000481 def: "Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium." [Wikipedia:Superior_vena_cava] comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "superior vena cava" EXACT [FMA:4720] synonym: "vena cava superior" RELATED [BTO:0002683] xref: BTO:0002683 xref: EHDAA2:0001962 xref: EHDAA:8726 xref: EMAPA:18417 xref: FMA:4720 xref: GAID:549 xref: MA:0000481 xref: MESH:A.07.231.908.949.815 xref: SCTID:181368006 xref: VHOG:0001195 xref: galen:SuperiorVenaCava xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Venenwinkel.png/200px-Venenwinkel.png xref: ncithesaurus:Superior_Vena_Cava is_a: UBERON:0001638 ! vein is_a: UBERON:0004087 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! vena cava [Term] id: UBERON:0001586 name: internal jugular vein namespace: uberon alt_id: UBERON:FMA_4724-MA_0002157 def: "The two internal jugular veins collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [Wikipedia:Internal_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "internal jugular" EXACT [EHDAA2:0000877] synonym: "internal jugular venous tree" EXACT [] xref: AAO:0010236 xref: EHDAA2:0000877 xref: EHDAA:5407 xref: EMAPA:17620 xref: FMA:4724 xref: MA:0002157 xref: OpenCyc:Mx4rvqdb95wpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0000878 xref: SCTID:181372005 xref: XAO:0000382 xref: galen:InternalJugularVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray562.png/200px-Gray562.png xref: ncithesaurus:Internal_Jugular_Vein is_a: UBERON:0004711 ! jugular vein relationship: develops_from UBERON:0001919 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endothelium of vein [Term] id: UBERON:0001587 name: subclavian vein namespace: uberon alt_id: UBERON:FMA_4725-MA_0002221 def: "In human anatomy, the subclavian veins are two large veins, one on either side of the body. Its diameter is approximately that of the small finger. It is divided into right and left subclavian vein. [WP,unvetted]." [Wikipedia:Subclavian_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "subclavian venous tree" EXACT [] xref: AAO:0010510 xref: EHDAA2:0001934 xref: EHDAA:4455 xref: EMAPA:17621 xref: FMA:4725 xref: GAID:546 xref: MA:0002221 xref: MESH:A.07.231.908.877 xref: OpenCyc:Mx4rvvvtMZwpEbGdrcN5Y29ycA xref: SCTID:181388005 xref: galen:SubclavianVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png xref: ncithesaurus:Subclavian_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001588 name: vertebral vein namespace: uberon alt_id: UBERON:FMA_4727-MA_0002262 def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [Wikipedia:Vertebral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010509 xref: FMA:4727 xref: MA:0002262 xref: OpenCyc:Mx4rwKt8xJwpEbGdrcN5Y29ycA xref: SCTID:303961000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray563.png/200px-Gray563.png xref: ncithesaurus:Vertebral_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001589 name: internal thoracic vein namespace: uberon alt_id: UBERON:FMA_4729-MA_0002237 def: "In human anatomy, the internal thoracic vein (previously known as the internal mammary vein) is a vessel that drains the chest wall and mamma, a term used for breast in anatomy. Bilaterally, it arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein. [WP,unvetted]." [Wikipedia:Internal_thoracic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:18641 xref: FMA:4729 xref: MA:0002237 xref: SCTID:281056008 xref: ncithesaurus:Internal_Thoracic_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0005194 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! thoracic vein [Term] id: UBERON:0001590 name: pericardiacophrenic vein namespace: uberon alt_id: UBERON:FMA_4742-MA_0002187 def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:4742 xref: MA:0002187 xref: SCTID:361626007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png xref: ncithesaurus:Pericardiacophrenic_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001591 name: thymic vein namespace: uberon alt_id: UBERON:FMA_4747-MA_0002246 comment: This class was created automatically from a combination of ontologies synonym: "thymic tributary of brachiocephalic vein" EXACT [] xref: FMA:4747 xref: MA:0002246 xref: SCTID:303432009 xref: ncithesaurus:Thymic_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001592 name: bronchial vein namespace: uberon alt_id: UBERON:FMA_4749-MA_0002088 def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [Wikipedia:Bronchial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bronchial venous tree" EXACT [] xref: FMA:4749 xref: MA:0002088 xref: SCTID:198293000 xref: ncithesaurus:Bronchial_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001593 name: venous plexus namespace: uberon alt_id: UBERON:FMA_4767-MA_0000069 def: "a congregation of multiple veins." [Wikipedia:Venous_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "venous network" EXACT [] xref: FMA:4767 xref: MA:0000069 xref: SCTID:322151008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001594 name: azygos vein namespace: uberon alt_id: UBERON:FMA_4838-MA_0002085 def: "An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]." [MP:0011569, Wikipedia:Azygos_vein] comment: Editor notes: check development relationships in different species subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "azygos venous tree" EXACT [] xref: EMAPA:18250 xref: FMA:4838 xref: GAID:528 xref: MA:0002085 xref: MESH:A.07.231.908.106 xref: galen:AzygosVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Azygos_vein.png/200px-Azygos_vein.png xref: ncithesaurus:Azygos_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001595 name: auricular muscle namespace: uberon alt_id: UBERON:FMA_48966-MA_0001229 def: "The auriculares muscles are the three muscles surrounding the auricula or outer ear: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,unvetted]." [Wikipedia:Auriculares_muscles] synonym: "muscle of auricle" EXACT [] xref: FMA:48966 xref: MA:0001229 xref: SCTID:244757006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray906.png/200px-Gray906.png is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0002376 ! muscle of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001596 name: intrinsic auricular muscle namespace: uberon alt_id: UBERON:FMA_48967-MA_0001231 xref: FMA:48967 xref: MA:0001231 xref: SCTID:244762007 is_a: UBERON:0001595 ! auricular muscle relationship: part_of UBERON:0001595 ! auricular muscle [Term] id: UBERON:0001597 name: masseter muscle namespace: uberon alt_id: UBERON:FMA_48996-MA_0002343 def: "In human anatomy, the masseter is one of the muscles of mastication. In the animal kingdom, it is particularly powerful in herbivores to facilitate chewing of plant matter. [WP,unvetted]." [Wikipedia:Masseter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "masseter" RELATED [BTO:0001755] xref: BTO:0001755 xref: EFO:0001424 xref: EHDAA2:0001067 xref: EHDAA:10561 xref: EMAPA:25135 xref: FMA:48996 xref: MA:0002343 xref: MESH:A.02.633.567.600.500 xref: SCTID:181738000 xref: VHOG:0000823 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/78/Illu_head_neck_muscle.jpg/200px-Illu_head_neck_muscle.jpg xref: ncithesaurus:Masseter_Muscle is_a: UBERON:0001577 ! muscle of face is_a: UBERON:0003681 ! masticatory muscle relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0001598 name: temporalis muscle namespace: uberon alt_id: UBERON:FMA_49006-MA_0002390 def: "The temporal muscle is one of the muscles of mastication. [WP,unvetted]." [Wikipedia:Temporalis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculus temporalis" EXACT [FMA:49006, FMA:TA] synonym: "temporal muscle" EXACT [] xref: EHDAA2:0002001 xref: EHDAA:10565 xref: EMAPA:25138 xref: FMA:49006 xref: GAID:148 xref: MA:0002390 xref: MESH:A.02.633.567.600.850 xref: VHOG:0000929 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Gray382.png/200px-Gray382.png xref: ncithesaurus:Temporal_Muscle is_a: UBERON:0003681 ! masticatory muscle relationship: part_of UBERON:0001444 ! subdivision of head [Term] id: UBERON:0001599 name: stapedius namespace: uberon alt_id: UBERON:FMA_49027-MA_0001220 def: "The stapedius is the smallest skeletal muscle in the human body. At just over one millimeter in length, its purpose is to stabilize the smallest bone in the body, the stapes. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "stapedius muscle" EXACT [EHDAA2:0001909] xref: EHDAA2:0001909 xref: EHDAA:9029 xref: EMAPA:18586 xref: FMA:49027 xref: GAID:164 xref: MA:0001220 xref: MESH:A.02.633.567.950 xref: SCTID:244780003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Musculusstapedius.png/200px-Musculusstapedius.png xref: ncithesaurus:Stapedius_Muscle is_a: UBERON:0004113 ! muscle of auditory ossicle is_a: UBERON:0004112 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! muscle of middle ear relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0001600 name: tensor tympani namespace: uberon alt_id: UBERON:FMA_49028-MA_0001221 def: "the larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "eustachian muscle" EXACT [] xref: EHDAA2:0002002 xref: EMAPA:18587 xref: FMA:49028 xref: GAID:166 xref: MA:0001221 xref: MESH:A.02.633.567.975 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray912.png/200px-Gray912.png xref: ncithesaurus:Tensor_Tympani is_a: UBERON:0002376 ! muscle of head is_a: UBERON:0004112 ! muscle of middle ear is_a: UBERON:0004113 ! muscle of auditory ossicle relationship: part_of UBERON:0004114 ! tympanic cavity [Term] id: UBERON:0001601 name: extra-ocular muscle namespace: uberon alt_id: UBERON:0006229 alt_id: UBERON:FMA_49033-MA_0000271 def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles] comment: AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "extra-ocular skeletal muscle" EXACT [] synonym: "extraocular muscle" EXACT [FMA:49033] synonym: "extraocular musculature" EXACT [ZFA:0000511] synonym: "extraocular skeletal muscle" EXACT [MA:0001271] synonym: "extrinsic eye muscle" EXACT [Obol:automatic] synonym: "extrinsic muscle of eyeball" EXACT [FMA:49033] synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482] xref: BTO:0001579 xref: EFO:0001921 xref: EHDAA2:0000482 xref: EHDAA:5729 xref: EMAPA:18234 xref: FMA:49033 xref: MA:0001271 xref: SCTID:181150000 xref: VHOG:0000549 xref: ZFA:0000511 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004277 ! eye muscle relationship: part_of UBERON:0003269 ! skeletal muscle of eye [Term] id: UBERON:0001602 name: medial rectus namespace: uberon alt_id: UBERON:0004836 alt_id: UBERON:FMA_49037-ZFA_0000301 def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus] comment: Taxon notes (from VHOG): \"The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.\" Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "medial rectus extraocular muscle" EXACT [MA:0001281] synonym: "medial rectus muscle" EXACT [] xref: FMA:49037 xref: MA:0001281 xref: SCTID:181151001 xref: TAO:0000301 xref: VHOG:0001127 xref: ZFA:0000301 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png xref: ncithesaurus:Medial_Rectus_Muscle is_a: UBERON:0006533 ! rectus extraocular muscle relationship: part_of UBERON:0002376 ! muscle of head [Term] id: UBERON:0001603 name: lateral rectus namespace: uberon alt_id: UBERON:0004837 alt_id: UBERON:FMA_49038-ZFA_0000383 def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280] synonym: "lateral rectus muscle" EXACT [] xref: FMA:49038 xref: MA:0001280 xref: SCTID:181152008 xref: TAO:0000383 xref: VHOG:0001129 xref: ZFA:0000383 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png xref: ncithesaurus:Lateral_Rectus_Muscle is_a: UBERON:0006533 ! rectus extraocular muscle disjoint_from: UBERON:0003250 ! rectus capitis lateralis [Term] id: UBERON:0001604 name: levator palpebrae superioris namespace: uberon alt_id: UBERON:FMA_49041-MA_0001272 def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:49041 xref: MA:0001272 xref: SCTID:244774006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png xref: ncithesaurus:Levator_Palpebrae_Superioris is_a: UBERON:0001601 ! extra-ocular muscle is_a: UBERON:0003660 ! eyelid muscle relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001605 name: ciliary muscle namespace: uberon alt_id: UBERON:FMA_49151-MA_0001269 def: "The ciliary muscle is a smooth muscle in the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Bowman`s muscles" RELATED [BTO:0000654] synonym: "musculus ciliarus" EXACT [BTO:0000654] xref: BTO:0000654 xref: FMA:49151 xref: MA:0001269 xref: SCTID:280862009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray872.png/200px-Gray872.png xref: ncithesaurus:Ciliary_Muscle is_a: UBERON:0001601 ! extra-ocular muscle relationship: part_of UBERON:0001775 ! ciliary body [Term] id: UBERON:0001606 name: muscle of iris namespace: uberon alt_id: UBERON:FMA_49154-MA_0001287 def: "." [Wikipedia:Iris_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "iris muscle" EXACT [] synonym: "iris muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of iris" EXACT [OBOL:automatic] xref: FMA:49154 xref: MA:0001287 xref: SCTID:280888007 is_a: UBERON:0004277 ! eye muscle [Term] id: UBERON:0001607 name: sphincter pupillae namespace: uberon alt_id: UBERON:FMA_49157-MA_0001289 def: "The iris sphincter muscle (pupillary sphincter, circular muscle of iris, circular fibers) is a muscle in the part of the eye called the iris. It encircles the eye, appropriate to its function as a constrictor. It is found in vertebrates and some cephalopods. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]." [Wikipedia:Sphincter_pupillae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "iris sphincter muscle" EXACT [BTO:0000656] synonym: "musculus sphincter pupillae" EXACT [BTO:0000656] synonym: "sphincter muscle of pupil" EXACT [BTO:0000656] xref: BTO:0000656 xref: FMA:49157 xref: MA:0001289 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png is_a: UBERON:0004234 ! iris smooth muscle is_a: UBERON:0007521 ! smooth muscle sphincter [Term] id: UBERON:0001608 name: dilatator pupillae namespace: uberon alt_id: UBERON:FMA_49158-MA_0001288 def: "The iris dilator muscle (pupil dilator muscle, pupillary dilator, radial muscle of iris, radiating fibers), is a smooth muscle of the eye, running radially in the iris and therefore fit as a dilator. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on N11-receptors.. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina. [WP,unvetted]." [Wikipedia:Dilator_pupillae, Wikipedia:Iris_dilator_muscle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dilator muscle of pupil" EXACT [] synonym: "dilator of pupil" EXACT [] synonym: "dilator pupillae" EXACT [] synonym: "dilator pupillae muscle" RELATED [BTO:0001371] synonym: "iris dilator muscle" EXACT [BTO:0001371] synonym: "musculus dilatator pupillae" EXACT [FMA:49158, FMA:TA] synonym: "musculus dilator pupillae" RELATED [BTO:0001371] xref: BTO:0001371 xref: FMA:49158 xref: MA:0001288 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png xref: ncithesaurus:Dilator_Pupillae_Muscle is_a: UBERON:0004234 ! iris smooth muscle [Term] id: UBERON:0001609 name: isthmus of thyroid gland namespace: uberon alt_id: UBERON:FMA_49178-MA_0000727 def: "The thyroid isthmus connects together the lower thirds of the lobes; it measures about 1.25 cm. in breadth, and the same in depth, and usually covers the second and third rings of the trachea. Its situation and size present, however, many variations. In the middle line of the neck it is covered by the skin and fascia, and close to the middle line, on either side, by the Sternothyreoideus. Across its upper border runs an anastomotic branch uniting the two superior thyroid arteries; at its lower border are the inferior thyroid veins. [WP,unvetted]." [Wikipedia:Thyroid_isthmus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "isthmus" BROAD [VHOG:0000739] synonym: "isthmus glandulae thyroideae" EXACT [] synonym: "thyroid gland isthmus" EXACT [] synonym: "thyroid isthmus" EXACT [] xref: EHDAA2:0002031 xref: EHDAA:5777 xref: EHDAA:5789 xref: EMAPA:18195 xref: EMAPA:18829 xref: FMA:49178 xref: MA:0000727 xref: SCTID:245539003 xref: VHOG:0000739 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png xref: ncithesaurus:Thyroid_Gland_Isthmus is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland disjoint_from: UBERON:0003052 ! midbrain-hindbrain boundary [Term] id: UBERON:0001610 name: lingual artery namespace: uberon alt_id: UBERON:FMA_49526-MA_0001992 def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lingual branch of external carotid artery" EXACT [] xref: AAO:0010492 xref: FMA:49526 xref: MA:0001992 xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA xref: SCTID:181327002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Lingual_artery.PNG/200px-Lingual_artery.PNG xref: ncithesaurus:Lingual_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001611 name: sublingual artery namespace: uberon alt_id: UBERON:FMA_49543-MA_0002049 def: "The Sublingual Artery arises at the anterior margin of the Hyoglossus, and runs forward between the Genioglossus and Mylohyoideus to the sublingual gland. It supplies the gland and gives branches to the Mylohyoideus and neighboring muscles, and to the mucous membrane of the mouth and gums. One branch runs behind the alveolar process of the mandible in the substance of the gum to anastomose with a similar artery from the other side; another pierces the Mylohyoideus and anastomoses with the submental branch of the external maxillary artery. [WP,unvetted]." [Wikipedia:Sublingual_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sublingual branch of lingual artery" EXACT [] xref: AAO:0010491 xref: FMA:49543 xref: MA:0002049 xref: SCTID:368706006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray559.png/200px-Gray559.png xref: ncithesaurus:Sublingual_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001612 name: facial artery namespace: uberon alt_id: UBERON:FMA_49549-MA_0001950 def: "The facial artery (external maxillary artery in older texts) is a branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [Wikipedia:Facial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "external maxillary artery" RELATED [] xref: EMAPA:19213 xref: FMA:49549 xref: MA:0001950 xref: OpenCyc:Mx4rwCt95ZwpEbGdrcN5Y29ycA xref: SCTID:181328007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png xref: ncithesaurus:Facial_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0001613 name: occipital artery namespace: uberon alt_id: UBERON:FMA_49586-MA_0002009 def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [Wikipedia:Occipital_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:49586 xref: MA:0002009 xref: OpenCyc:Mx4rwC1IFJwpEbGdrcN5Y29ycA xref: SCTID:244219005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png xref: ncithesaurus:Occipital_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001614 name: superficial temporal artery namespace: uberon alt_id: UBERON:FMA_49650-MA_0002062 def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Superficial_temporal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0003747 xref: FMA:49650 xref: MA:0002062 xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA xref: SCTID:181325005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png is_a: UBERON:0001632 ! temporal artery [Term] id: UBERON:0001615 name: transverse facial artery namespace: uberon alt_id: UBERON:FMA_49657-MA_0002068 def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [Wikipedia:Transverse_facial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:49657 xref: MA:0002068 xref: SCTID:146551008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png xref: ncithesaurus:Transverse_Facial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001616 name: maxillary artery namespace: uberon alt_id: UBERON:FMA_49675-MA_0001919 def: "The maxillary artery (or internal maxillary artery in older texts) is an artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [Wikipedia:Maxillary_artery] comment: Development notes: ...1st pair undergoes partial regression, the remnants of which becomes part of the maxillary arteries [http://download.videohelp.com/vitualis/med/Vascular_Devt.html] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "internal maxillary artery" RELATED [] xref: EHDAA2:0001069 xref: EHDAA:7357 xref: EMAPA:17311 xref: FMA:49675 xref: GAID:498 xref: MA:0001919 xref: MESH:A.07.231.114.523 xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA xref: SCTID:181326006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray510.png/200px-Gray510.png xref: ncithesaurus:Maxillary_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0001617 name: mental artery namespace: uberon alt_id: UBERON:FMA_49701-MA_0002002 def: "The inferior alveolar artery (inferior dental artery) is an artery of the face. [WP,unvetted]." [Wikipedia:Mental_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "mental branch of inferior alveolar artery" EXACT [] synonym: "ramus mentalis (arteria alveolaris inferior)" EXACT [FMA:49701, FMA:TA] xref: FMA:49701 xref: MA:0002002 xref: SCTID:147561008 xref: ncithesaurus:Mental_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001618 name: buccal artery namespace: uberon alt_id: UBERON:FMA_49754-MA_0001924 def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [Wikipedia:Buccal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:49754 xref: MA:0001924 xref: SCTID:148066005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png xref: ncithesaurus:Buccal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001619 name: ophthalmic artery namespace: uberon alt_id: UBERON:FMA_49868-MA_0002011 def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic canal. [WP,unvetted]." [Wikipedia:Ophthalmic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010497 xref: EHDAA2:0001300 xref: EHDAA:7363 xref: EMAPA:17007 xref: FMA:49868 xref: GAID:503 xref: MA:0002011 xref: MESH:A.07.231.114.622 xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA xref: SCTID:181310005 xref: XAO:0000368 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Gray514.png/200px-Gray514.png is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0001620 name: central retinal artery namespace: uberon alt_id: UBERON:FMA_49879-MA_0002038 def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Zinn's artery" EXACT [] synonym: "arteria centralis retinae" RELATED [Wikipedia:Central_retinal_artery] synonym: "central artery of retina" EXACT [] synonym: "central artery of the retina" RELATED [Wikipedia:Central_retinal_artery] synonym: "retinal artery" EXACT [] xref: FMA:49879 xref: GAID:508 xref: MA:0002038 xref: MESH:A.07.231.114.765 xref: SCTID:277771001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray514_updated.png/200px-Gray514_updated.png xref: ncithesaurus:Retinal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001621 name: coronary artery namespace: uberon alt_id: UBERON:FMA_49893-MA_0002453 def: "Systemic artery which supplies the heart.[FMA]" [FMA:FMA, Wikipedia:Coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "coronary arterial tree" EXACT [] xref: BTO:0000290 xref: EFO:0002551 xref: EMAPA:19160 xref: EMAPA:25968 xref: EV:0100383 xref: FMA:49893 xref: MA:0002453 xref: OpenCyc:Mx4rvoL56ZwpEbGdrcN5Y29ycA xref: SCTID:181294004 xref: galen:CoronaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png xref: ncithesaurus:Coronary_Artery is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0001622 name: lacrimal artery namespace: uberon alt_id: UBERON:FMA_49927-MA_0001988 def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [Wikipedia:Lacrimal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:49927 xref: MA:0001988 xref: SCTID:369324002 xref: ncithesaurus:Lacrimal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001623 name: dorsal nasal artery namespace: uberon alt_id: UBERON:FMA_50000-MA_0001945 def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [Wikipedia:Dorsal_nasal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal nasal branch of ophthalmic artery" EXACT [] synonym: "external nasal artery" EXACT [] xref: FMA:50000 xref: MA:0001945 xref: SCTID:369333000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png xref: ncithesaurus:Dorsal_Nasal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001624 name: anterior cerebral artery namespace: uberon alt_id: UBERON:FMA_50028-MA_0001915 def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [Wikipedia:Anterior_cerebral_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000128 xref: EHDAA:5296 xref: EMAPA:17854 xref: EMAPA:18614 xref: FMA:50028 xref: GAID:485 xref: MA:0001915 xref: MESH:A.07.231.114.228.100 xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA xref: SCTID:181309000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png xref: ncithesaurus:Anterior_Cerebral_Artery is_a: UBERON:0004449 ! cerebral artery [Term] id: UBERON:0001625 name: right coronary artery namespace: uberon alt_id: UBERON:FMA_50039-MA_0002455 def: "Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart.[FMA]" [FMA:FMA, Wikipedia:Right_coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "right coronary arterial tree" EXACT [] xref: EHDAA2:0004505 xref: FMA:50039 xref: MA:0002455 xref: SCTID:362037006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png xref: ncithesaurus:Right_Coronary_Artery is_a: UBERON:0001621 ! coronary artery [Term] id: UBERON:0001626 name: left coronary artery namespace: uberon alt_id: UBERON:FMA_50040-MA_0002454 def: "Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart.[FMA]" [FMA:FMA, Wikipedia:Left_coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "left coronary arterial tree" EXACT [] xref: EHDAA2:0004504 xref: FMA:50040 xref: MA:0002454 xref: SCTID:362034004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Gray495.png/200px-Gray495.png xref: ncithesaurus:Left_Coronary_Artery is_a: UBERON:0001621 ! coronary artery [Term] id: UBERON:0001627 name: middle cerebral artery namespace: uberon alt_id: UBERON:FMA_50079-MA_0001935 def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [Wikipedia:Middle_cerebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sylvian artery" EXACT [] xref: EHDAA2:0001179 xref: EHDAA:5298 xref: EMAPA:18239 xref: EMAPA:18615 xref: FMA:50079 xref: GAID:487 xref: MA:0001935 xref: MESH:A.07.231.114.228.550 xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA xref: SCTID:181312002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png xref: ncithesaurus:Middle_Cerebral_Artery is_a: UBERON:0004449 ! cerebral artery [Term] id: UBERON:0001628 name: posterior communicating artery namespace: uberon alt_id: UBERON:FMA_50084-MA_0002023-ZFA_0005001 def: "In human anatomy, the posterior communicating artery is one of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery." [Wikipedia:Posterior_communicating_artery] comment: Taxon notes: todo - verify ZFA link: An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "PCA" RELATED [] synonym: "PCS" RELATED [] synonym: "caudal communicating segment" EXACT [ZFA:0005001] synonym: "posterior communicating segment of the basilar artery" EXACT [ZFA:0005001] xref: EHDAA2:0004518 xref: EHDAA:3352 xref: EMAPA:18600 xref: FMA:50084 xref: MA:0002023 xref: OpenCyc:Mx4rwDDlqpwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001487 xref: SCTID:181314001 xref: TAO:0005001 xref: ZFA:0005001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png xref: ncithesaurus:Posterior_Communicating_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006347 ! communicating artery [Term] id: UBERON:0001629 name: carotid body namespace: uberon alt_id: UBERON:FMA_50095-MA_0002463 def: "The carotid body (carotid glomus or glomus caroticum) is a small cluster of chemoreceptors and supporting cells located near the fork of the carotid artery (which runs along both sides of the throat). The carotid body detects changes in the composition of arterial blood flowing through it, mainly the partial pressure of oxygen, but also of carbon dioxide. Furthermore, it is also sensitive to changes in pH and temperature. [WP,unvetted]." [Wikipedia:Carotid_body] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000204 xref: EMAPA:19211 xref: FMA:50095 xref: GAID:813 xref: MA:0002463 xref: MESH:A.08.800.550.700.120.600.150 xref: SCTID:362586000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray1186.png/200px-Gray1186.png xref: ncithesaurus:Carotid_Body is_a: UBERON:0000062 ! organ is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005396 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! carotid artery segment relationship: part_of UBERON:0001530 ! common carotid artery plus branches [Term] id: UBERON:0001630 name: muscle organ namespace: uberon alt_id: UBERON:FMA_5022-MIAA_0000302-XAO_0000174 def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "muscle" EXACT [ZFA:0005145] synonym: "skeletal muscle system" RELATED [BTO:0001103] synonym: "somatic muscle" RELATED [BTO:0001103] xref: AAO:0011066 xref: BTO:0001103 xref: EMAPA:18187 xref: EMAPA:18923 xref: EV:0100146 xref: FMA:5022 xref: GAID:131 xref: MA:0000015 xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA xref: SCTID:71616004 xref: TAO:0005145 xref: VHOG:0001245 xref: XAO:0000172 xref: ZFA:0005145 xref: galen:Muscle is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005090 ! muscle structure relationship: part_of UBERON:0000383 ! musculature of body [Term] id: UBERON:0001631 name: thoracic duct namespace: uberon alt_id: UBERON:FMA_5031-ZFA_0005110 def: "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein[FMA]." [FMA:5031, Wikipedia:Thoracic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "trunk of thoracic duct tree" EXACT [] xref: EHDAA2:0004501 xref: EMAPA:19310 xref: FMA:5031 xref: GAID:1290 xref: MA:0002801 xref: MESH:A.15.382.520.869 xref: SCTID:362600004 xref: TAO:0005110 xref: ZFA:0005110 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray599.png/200px-Gray599.png xref: ncithesaurus:Thoracic_Duct is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0001632 name: temporal artery namespace: uberon alt_id: UBERON:FMA_50438-MA_0002061 def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Temporal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010495 xref: FMA:50438 xref: GAID:489 xref: MA:0002061 xref: MESH:A.07.231.114.228.868 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png xref: ncithesaurus:Temporal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001633 name: basilar artery namespace: uberon alt_id: UBERON:FMA_50542-MA_0001920-ZFA_0005002 def: "In human anatomy, the basilar artery is one of the arteries that supplies the brain with oxygen-rich blood. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Basilar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "BA" RELATED [] xref: EHDAA2:0000163 xref: EHDAA:5285 xref: EMAPA:17307 xref: FMA:50542 xref: GAID:474 xref: MA:0001920 xref: MESH:A.07.231.114.106 xref: OpenCyc:Mx4rwJTtcZwpEbGdrcN5Y29ycA xref: SCTID:244215004 xref: TAO:0005002 xref: VHOG:0000237 xref: ZFA:0005002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png xref: ncithesaurus:Basilar_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: UBERON:0001634 name: mesencephalic artery namespace: uberon alt_id: UBERON:FMA_50570-ZFA_0001068 def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al.2001." [ZFIN:curator] comment: Editor notes: review this term, check taxon scope synonym: "MsA" RELATED [] xref: FMA:50570 xref: TAO:0001068 xref: XAO:0004173 xref: ZFA:0001068 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001635 name: superior cerebellar artery namespace: uberon alt_id: UBERON:FMA_50573-MA_0001934 def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000681 xref: EMAPA:19309 xref: FMA:50573 xref: MA:0001934 xref: SCTID:244214000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/CerebellumArteries.jpg/200px-CerebellumArteries.jpg xref: ncithesaurus:Superior_Cerebellar_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003472 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! cerebellar artery relationship: part_of UBERON:0001633 ! basilar artery [Term] id: UBERON:0001636 name: posterior cerebral artery namespace: uberon alt_id: UBERON:FMA_50583-MA_0002022 def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [Wikipedia:Posterior_cerebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000659 xref: EMAPA:17861 xref: EMAPA:18616 xref: FMA:50583 xref: GAID:488 xref: MA:0002022 xref: MESH:A.07.231.114.228.700 xref: OpenCyc:Mx4rwO4qIJwpEbGdrcN5Y29ycA xref: SCTID:181313007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png xref: ncithesaurus:Posterior_Cerebral_Artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery relationship: part_of UBERON:0001633 ! basilar artery [Term] id: UBERON:0001637 name: artery namespace: uberon alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005 def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB] comment: Editor notes: Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "arterial subtree" EXACT [] synonym: "arterial system" RELATED [] synonym: "arterial tree organ part" EXACT [] synonym: "arterial vessel" RELATED [] xref: AAO:0010211 xref: AEO:0000208 xref: BTO:0000573 xref: EFO:0000814 xref: EHDAA2:0000143 xref: EHDAA2:0003253 xref: EV:0100026 xref: FMA:50720 xref: GAID:468 xref: MA:0000064 xref: MAT:0000034 xref: MESH:A.07.231.114 xref: MIAA:0000034 xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA xref: SCTID:362877004 xref: TAO:0000005 xref: VHOG:0001251 xref: XAO:0000114 xref: ZFA:0000005 xref: galen:Artery xref: ncithesaurus:Artery is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003509 ! arterial blood vessel relationship: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0001638 name: vein namespace: uberon alt_id: UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082 def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein] comment: TODO - check with MA - vein vs venous blood vessel subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "venous subtree" BROAD [] synonym: "venous tree organ part" EXACT [] synonym: "venous vessel" BROAD [] xref: AAO:0010212 xref: AEO:0000209 xref: BTO:0000234 xref: EFO:0000816 xref: EHDAA2:0003254 xref: EV:0100031 xref: FMA:50723 xref: GAID:492 xref: MA:0000067 xref: MAT:0000037 xref: MESH:A.07.231.908 xref: MIAA:0000037 xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA xref: SCTID:181367001 xref: TAO:0000082 xref: VHOG:0001252 xref: XAO:0000115 xref: ZFA:0000082 xref: galen:Vein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png xref: ncithesaurus:Vein is_a: UBERON:0003920 ! venous blood vessel [Term] id: UBERON:0001639 name: hepatic portal vein namespace: uberon alt_id: UBERON:FMA_50735-MA_0002132-ZFA_0005090 def: "A portal vein that transports nutrients from the digestive tract to the liver[Kardong]. A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]." [ISBN10:0073040584, Wikipedia:Hepatic_portal_vein, http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "HPV" RELATED [] synonym: "hepatic portal tree" EXACT [] synonym: "liver portal vein" EXACT [OBOL:automatic] synonym: "portal vein" RELATED INCONSISTENT [] synonym: "portal vein of liver" EXACT [OBOL:automatic] synonym: "primary hepatic portal vein" RELATED [ZFA:0005090] synonym: "primary hepatic portal veins" RELATED [] xref: AAO:0010214 xref: FMA:50735 xref: MA:0002132 xref: TAO:0005090 xref: VHOG:0000642 xref: ZFA:0005090 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0010194 ! hepatic portal system relationship: part_of UBERON:0002107 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! liver [Term] id: UBERON:0001640 name: celiac artery namespace: uberon alt_id: UBERON:FMA_50737-MA_0001931 def: "The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta." [Wikipedia:Celiac_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "celiac tree" EXACT [] synonym: "coeliac artery" EXACT [Wikipedia:Celiac_artery] synonym: "coeliac axis" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunck" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunk" RELATED [Wikipedia:Celiac_artery] synonym: "truncus coeliacus" RELATED [Wikipedia:Celiac_artery] xref: EHDAA2:0004519 xref: FMA:50737 xref: GAID:483 xref: MA:0001931 xref: MESH:A.07.231.114.207 xref: SCTID:181340007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png xref: ncithesaurus:Coeliac_Artery is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0001641 name: transverse sinus namespace: uberon alt_id: UBERON:FMA_50763-MA_0001868 def: "The transverse sinuses (left and right lateral sinuses), within a human head, are two areas beneath the brain, which allow blood veins to span the area, from the back of the head towards the nose. They drain from the straight sinus and superior sagittal sinus (along the top and back of the brain) to the sigmoid sinuses (at the center of the head), at the internal jugular vein. See diagram (at right): labeled under the brain as '' . The transverse sinuses are of large size and begin at the internal occipital protuberance; one, generally the right, being the direct continuation of the superior sagittal sinus, the other of the straight sinus. Each transverse sinus passes lateralward and forward, describing a slight curve with its convexity upward, to the base of the petrous portion of the temporal bone, and lies, in this part of its course, in the attached margin of the tentorium cerebelli; it then leaves the tentorium and curves downward and medialward to reach the jugular foramen, where it ends in the internal jugular vein. In its course it rests upon the squama of the occipital, the mastoid angle of the parietal, the mastoid part of the temporal, and, just before its termination, the jugular process of the occipital; the portion which occupies the groove on the mastoid part of the temporal is sometimes termed the sigmoid sinus. The transverse sinuses are frequently of unequal size, with the one formed by the superior sagittal sinus being the larger; they increase in size as they proceed, from back to center. On transverse section, the horizontal portion exhibits a prismatic form, the curved portion has a semicylindrical form. They receive the blood from the superior petrosal sinuses at the base of the petrous portion of the temporal bone; they communicate with the veins of the pericranium by means of the mastoid and condyloid emissary veins; and they receive some of the inferior cerebral and inferior cerebellar veins, and some veins from the diploC+. The petrosquamous sinus, when present, runs backward along the junction of the squama and petrous portion of the temporal, and opens into the transverse sinus. [WP,unvetted]." [Wikipedia:Transverse_sinus] comment: todo - check su subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral sinus" EXACT [] xref: EMAPA:18637 xref: FMA:50763 xref: MA:0001868 xref: OpenCyc:Mx4rwDb62ZwpEbGdrcN5Y29ycA xref: SCTID:279262004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif xref: ncithesaurus:Transverse_Sinus is_a: UBERON:0001638 ! vein is_a: UBERON:0006615 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! venous sinus [Term] id: UBERON:0001642 name: superior sagittal sinus namespace: uberon alt_id: UBERON:FMA_50767-MA_0001867 def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [Wikipedia:Superior_sagittal_sinus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:50767 xref: MA:0001867 xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA xref: SCTID:362075006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif xref: ncithesaurus:Superior_Sagittal_Sinus is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006615 ! venous sinus [Term] id: UBERON:0001643 name: oculomotor nerve namespace: uberon alt_id: UBERON:FMA_50864-MA_0001095-XAO_0003090-ZFA_0000405 def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-III" RELATED [] synonym: "Oculomotor nerve [III]" EXACT [] synonym: "cranial nerve III" RELATED [] synonym: "nervus oculomotorius [iii]" EXACT [FMA:50864, FMA:TA] synonym: "occulomotor" RELATED [] synonym: "oculomotor III" EXACT [EHDAA2:0001284] synonym: "oculomotor III nerve" EXACT [] synonym: "oculomotor nerve tree" EXACT [] synonym: "third cranial nerve" EXACT [] xref: AAO:0010468 xref: BM:MB-IIIN xref: EHDAA2:0001284 xref: EHDAA:3736 xref: EMAPA:17574 xref: FMA:50864 xref: GAID:829 xref: MA:0001095 xref: MESH:A.08.800.800.120.600 xref: NIF_GrossAnatomy:birnlex_1646 xref: OpenCyc:Mx4rvj7pZpwpEbGdrcN5Y29ycA xref: SCTID:362456009 xref: TAO:0000405 xref: VHOG:0000692 xref: XAO:0003090 xref: ZFA:0000405 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png xref: ncithesaurus:Oculomotor_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001943 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! midbrain tegmentum [Term] id: UBERON:0001644 name: trochlear nerve namespace: uberon alt_id: UBERON:FMA_50865-MA_0001105-XAO_0003091-ZFA_0000600 def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-IV" RELATED [] synonym: "Trochlear nerve [IV]" EXACT [] synonym: "cranial nerve IV" RELATED [] synonym: "fourth cranial nerve" EXACT [] synonym: "nervus trochlearis [iv]" EXACT [FMA:50865, FMA:TA] synonym: "pathetic nerve" RELATED [] synonym: "superior oblique nerve" EXACT [] synonym: "trochlear" RELATED [] synonym: "trochlear IV nerve" EXACT [] synonym: "trochlear nerve tree" EXACT [] xref: AAO:0010469 xref: BM:IVN xref: EHDAA2:0002090 xref: EMAPA:18218 xref: FMA:50865 xref: GAID:838 xref: MA:0001105 xref: MESH:A.08.800.800.120.800 xref: NIF_GrossAnatomy:birnlex_1654 xref: OpenCyc:Mx4rvyeBQ5wpEbGdrcN5Y29ycA xref: SCTID:180939009 xref: TAO:0000600 xref: VHOG:0000705 xref: XAO:0003091 xref: ZFA:0000600 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Trochlear_nerve.png/200px-Trochlear_nerve.png xref: ncithesaurus:Trochlear_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001943 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! midbrain tegmentum [Term] id: UBERON:0001645 name: trigeminal nerve namespace: uberon alt_id: UBERON:FMA_50866-MA_0001100-XAO_0003092-ZFA_0000697 def: "Cranial nerve that branches into the ophthalmic (supplying the skin of the nose and upper jaw) and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-V" RELATED [] synonym: "Trigeminal nerve [V]" EXACT [] synonym: "cranial nerve V" RELATED [] synonym: "fifth cranial nerve" EXACT [] synonym: "nervus trigeminus" RELATED [BTO:0001072] synonym: "nervus trigeminus [v]" EXACT [FMA:50866, FMA:TA] synonym: "trigeminal V" EXACT [EHDAA2:0002084] synonym: "trigeminal nerve tree" EXACT [] synonym: "trigeminal v nerve" EXACT [] synonym: "trigeminus" RELATED [BTO:0001072] xref: AAO:0010470 xref: BM:VN xref: BTO:0001072 xref: EFO:0001402 xref: EHDAA2:0002084 xref: EHDAA:3738 xref: EMAPA:16797 xref: EMAPA:17576 xref: FMA:50866 xref: GAID:726 xref: MA:0001100 xref: MESH:A.08.800.800.120.760 xref: NIF_GrossAnatomy:birnlex_869 xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA xref: SCTID:362459002 xref: TAO:0000697 xref: VHOG:0000704 xref: XAO:0003092 xref: ZFA:0000697 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Gray778_Trigeminal.png/200px-Gray778_Trigeminal.png xref: ncithesaurus:Trigeminal_Nerve is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001646 name: abducens nerve namespace: uberon alt_id: UBERON:FMA_50867-MA_0001087-XAO_0003093-ZFA_0000310 def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Abducens nerve [VI]" EXACT [] synonym: "Abducent nerve [VI]" EXACT [] synonym: "CN-VI" RELATED [] synonym: "abducens VI nerve" EXACT [] synonym: "abducens nerve tree" EXACT [] synonym: "abducent nerve" RELATED [] synonym: "cranial nerve VI" RELATED [] synonym: "lateral rectus nerve" EXACT [] synonym: "nervus abducens" EXACT [] synonym: "nervus abducens [vi]" EXACT [FMA:50867, FMA:TA] synonym: "sixth cranial nerve" EXACT [] xref: AAO:0010471 xref: BM:Pons-VIN xref: EHDAA2:0000103 xref: FMA:50867 xref: GAID:824 xref: MA:0001087 xref: MESH:A.08.800.800.120.030 xref: NIF_GrossAnatomy:birnlex_876 xref: OpenCyc:Mx4rvjl41ZwpEbGdrcN5Y29ycA xref: SCTID:180941005 xref: TAO:0000310 xref: VHOG:0000697 xref: XAO:0003093 xref: ZFA:0000310 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Abducens_nerve1.png/200px-Abducens_nerve1.png xref: ncithesaurus:Abducens_Nerve is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001647 name: facial nerve namespace: uberon alt_id: UBERON:FMA_50868-MA_0001091-XAO_0003094-ZFA_0000664 def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-VII" RELATED [] synonym: "Facial nerve [VII]" EXACT [] synonym: "branchiomeric cranial nerve" EXACT [] synonym: "cranial nerve VII" RELATED [] synonym: "face nerve" EXACT [OBOL:automatic] synonym: "facial VII" EXACT [EHDAA2:0000489] synonym: "facial VII nerve" EXACT [] synonym: "facial nerve tree" EXACT [] synonym: "nerve of face" EXACT [OBOL:automatic] synonym: "nervus facialis" EXACT [ZFA:0000664] synonym: "nervus facialis [vii]" EXACT [FMA:50868, FMA:TA] synonym: "seventh cranial nerve" EXACT [] xref: AAO:0010472 xref: BM:Pons-VIIN xref: EHDAA2:0000489 xref: EHDAA:3729 xref: EMAPA:17569 xref: EMAPA:17796 xref: FMA:50868 xref: GAID:719 xref: MA:0001091 xref: MESH:A.08.800.800.120.250 xref: NIF_GrossAnatomy:birnlex_827 xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA xref: SCTID:362460007 xref: TAO:0000664 xref: VHOG:0000706 xref: XAO:0003094 xref: ZFA:0000664 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Cranial_nerve_VII.svg/200px-Cranial_nerve_VII.svg.png xref: ncithesaurus:Facial_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001648 name: vestibulocochlear nerve namespace: uberon alt_id: UBERON:FMA_50869-FMA_53431-MA_0001109-XAO_0003095-ZFA_0000247 def: "Cranial nerve that runs to the ear." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-VIII" EXACT [] synonym: "VIIIth cranial nerve" EXACT [] synonym: "Vestibulocochlear nerve [VIII]" EXACT [] synonym: "acoustic nerve" EXACT [] synonym: "acoustic nerve (crosby)" EXACT [] synonym: "cochlear-vestibular nerve" EXACT [] synonym: "cochleovestibular nerve" EXACT [] synonym: "cranial nerve VIII" EXACT [] synonym: "eighth cranial nerve" EXACT [] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "nervus vestibulocochlearis [viii]" EXACT [FMA:50869, FMA:TA] synonym: "octaval nerve" RELATED [] synonym: "stato-acoustic nerve" EXACT [] synonym: "statoacoustic nerve" RELATED [] synonym: "vestibulocochlear VIII nerve" EXACT [] synonym: "vestibulocochlear nerve tree" EXACT [] xref: AAO:0010473 xref: BTO:0003490 xref: EHDAA2:0002194 xref: EMAPA:17801 xref: FMA:50869 xref: GAID:839 xref: MA:0001109 xref: MESH:A.08.800.800.120.910 xref: NIF_GrossAnatomy:birnlex_890 xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA xref: SCTID:180945001 xref: TAO:0000247 xref: VHOG:0000695 xref: XAO:0003095 xref: ZFA:0000247 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png xref: ncithesaurus:Vestibulocochlear_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0002105 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! vestibulo-auditory system [Term] id: UBERON:0001649 name: glossopharyngeal nerve namespace: uberon alt_id: UBERON:FMA_50870-MA_0001093-XAO_0003096-ZFA_0000668 def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-IX" RELATED [] synonym: "Glossopharyngeal nerve [IX]" EXACT [] synonym: "cranial nerve IX" RELATED [] synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709] synonym: "glossopharyngeal IX nerve" EXACT [] synonym: "glossopharyngeal nerve tree" EXACT [] synonym: "nervus glossopharyngeus" EXACT [ZFA:0000668] synonym: "nervus glossopharyngeus [ix]" EXACT [FMA:50870, FMA:TA] synonym: "ninth cranial nerve" EXACT [] xref: AAO:0010474 xref: BTO:0004979 xref: EHDAA2:0000709 xref: EHDAA:3733 xref: EMAPA:16795 xref: EMAPA:17268 xref: FMA:50870 xref: GAID:827 xref: MA:0001093 xref: MESH:A.08.800.800.120.290 xref: NIF_GrossAnatomy:birnlex_899 xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA xref: SCTID:362465002 xref: TAO:0000668 xref: VHOG:0000701 xref: XAO:0003096 xref: ZFA:0000668 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png xref: ncithesaurus:Glossopharyngeal_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001650 name: hypoglossal nerve namespace: uberon alt_id: UBERON:FMA_50871-MA_0001094 def: "Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue." [GO:0021566, Wikipedia:Hypoglossal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Hypoglossal nerve [XII]" EXACT [] synonym: "cranial nerve XII" EXACT [NIF_GrossAnatomy:birnlex_820] synonym: "hypoglossal XII" EXACT [EHDAA2:0000798] synonym: "hypoglossal XII nerve" EXACT [] synonym: "hypoglossal nerve tree" EXACT [] synonym: "nervus hypoglossus [xii]" EXACT [FMA:50871, FMA:TA] synonym: "twelfth cranial nerve" EXACT [] xref: AAO:0010477 xref: BTO:0003386 xref: EHDAA2:0000798 xref: EHDAA:2859 xref: EMAPA:17269 xref: FMA:50871 xref: GAID:828 xref: MA:0001094 xref: MESH:A.08.800.800.120.330 xref: NIF_GrossAnatomy:birnlex_820 xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA xref: SCTID:362471008 xref: VHOG:0000693 xref: XAO:0004215 xref: ncithesaurus:Hypoglossal_Nerve is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001651 name: right pulmonary artery namespace: uberon alt_id: UBERON:FMA_50872-MA_0002500 def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Right_pulmonary_artery] comment: TODO - add class 'pulmonary artery tree organ' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "right main pulmonary artery" EXACT [] synonym: "right pulmonary arterial tree" EXACT [] xref: FMA:50872 xref: MA:0002500 xref: SCTID:244235003 xref: galen:RightPulmonaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: ncithesaurus:Right_Pulmonary_Artery is_a: UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0001652 name: left pulmonary artery namespace: uberon alt_id: UBERON:FMA_50873-MA_0002032 def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Left_pulmonary_artery] comment: TODO - add class 'pulmonary artery tree organ' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "left main pulmonary artery" EXACT [] synonym: "left pulmonary arterial tree" EXACT [] xref: FMA:50873 xref: MA:0002032 xref: SCTID:244234004 xref: galen:LeftPulmonaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: ncithesaurus:Left_Pulmonary_Artery is_a: UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0001653 name: facial vein namespace: uberon alt_id: UBERON:FMA_50874-MA_0002115 def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [Wikipedia:Facial_vein] comment: Comment note MA also has 'anterior facial vein' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "face vein" EXACT [OBOL:automatic] synonym: "vein of face" EXACT [OBOL:automatic] xref: AAO:0010513 xref: EMAPA:19220 xref: FMA:50874 xref: MA:0002115 xref: OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA xref: SCTID:181374006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:Facial_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein [Term] id: UBERON:0001654 name: supra-orbital vein namespace: uberon alt_id: UBERON:FMA_50904-MA_0002228 def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [Wikipedia:Supra-orbital_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "supraorbital vein" EXACT [] xref: FMA:50904 xref: MA:0002228 xref: SCTID:152006005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:Supra-orbital_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001655 name: submental vein namespace: uberon alt_id: UBERON:FMA_50925-MA_0002223 comment: This class was created automatically from a combination of ontologies xref: FMA:50925 xref: MA:0002223 xref: SCTID:152309009 xref: ncithesaurus:Submental_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001656 name: retromandibular vein namespace: uberon alt_id: UBERON:FMA_50928-MA_0002117 def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [Wikipedia:Retromandibular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "posterior facial vein" EXACT [] xref: FMA:50928 xref: MA:0002117 xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA xref: SCTID:151299003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:Temporo-maxillary_Vein is_a: UBERON:0001653 ! facial vein [Term] id: UBERON:0001657 name: superficial temporal vein namespace: uberon alt_id: UBERON:FMA_50932-MA_0002242 def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0003748 xref: EMAPA:19315 xref: FMA:50932 xref: MA:0002242 xref: OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA xref: SCTID:150087005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:Superficial_Temporal_Vein is_a: UBERON:0001671 ! temporal vein [Term] id: UBERON:0001658 name: middle temporal vein namespace: uberon alt_id: UBERON:FMA_50935-MA_0002241 comment: This class was created automatically from a combination of ontologies xref: FMA:50935 xref: MA:0002241 xref: SCTID:151400007 is_a: UBERON:0001671 ! temporal vein [Term] id: UBERON:0001659 name: transverse facial vein namespace: uberon alt_id: UBERON:FMA_50938-MA_0002247 def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Transverse_facial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:50938 xref: MA:0002247 xref: SCTID:151501009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001660 name: maxillary vein namespace: uberon alt_id: UBERON:FMA_50941-MA_0002169 def: "The maxillary veins (internal maxillary vein in older sources) consist of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [Wikipedia:Maxillary_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:50941 xref: MA:0002169 xref: OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA xref: SCTID:29972009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:Internal_Maxillary_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001661 name: deep temporal vein namespace: uberon alt_id: UBERON:FMA_50954-MA_0002240 comment: This class was created automatically from a combination of ontologies xref: FMA:50954 xref: MA:0002240 xref: SCTID:798000 xref: ncithesaurus:Deep_Temporal_Vein is_a: UBERON:0001671 ! temporal vein [Term] id: UBERON:0001662 name: anterior auricular vein namespace: uberon alt_id: UBERON:FMA_50956-MA_0002083 def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [Wikipedia:Anterior_auricular_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:50956 xref: MA:0002083 xref: SCTID:151602009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:Anterior_Auricular_Vein is_a: UBERON:0006197 ! auricular vein [Term] id: UBERON:0001663 name: cerebral vein namespace: uberon alt_id: UBERON:FMA_50981-MA_0002096 def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [Wikipedia:Cerebral_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:50981 xref: GAID:530 xref: MA:0002096 xref: MESH:A.07.231.908.155 xref: SCTID:244392000 xref: XAO:0004160 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Gray568.png/200px-Gray568.png xref: ncithesaurus:Cerebral_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001664 name: inferior cerebral vein namespace: uberon alt_id: UBERON:FMA_50986-MA_0002097 def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:50986 xref: MA:0002097 xref: SCTID:244395003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0001665 name: triceps surae namespace: uberon alt_id: UBERON:FMA_51062-MA_0002400 def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5bS2. [WP,unvetted]." [Wikipedia:Triceps_surae] comment: A set of muscles in FMA, a single organ in MA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "calf muscle" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "gastrosoleus" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "gastrosoleus complex" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "sural triceps" RELATED [] xref: FMA:51062 xref: MA:0002400 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: ncithesaurus:Triceps_Surae is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0001666 name: flexor digitorum longus namespace: uberon alt_id: UBERON:FMA_51071-MA_0002299 def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [Wikipedia:Flexor_digitorum_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000466 xref: FMA:51071 xref: MA:0002299 xref: SCTID:181703002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png xref: ncithesaurus:Flexor_Digitorum_Longus is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001667 name: tibialis posterior namespace: uberon alt_id: UBERON:FMA_51099-MA_0002394 def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [Wikipedia:Tibialis_posterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ibialis posticus" RELATED [BTO:0000867] synonym: "posterior tibialis" RELATED [BTO:0000867] synonym: "tibialis caudalis" EXACT [] synonym: "tibialis posterior muscle" RELATED [BTO:0000867] xref: BTO:0000867 xref: FMA:51099 xref: MA:0002394 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png xref: ncithesaurus:Tibialis_Caudalis is_a: UBERON:0008230 ! tibialis [Term] id: UBERON:0001668 name: cerebellar vein namespace: uberon alt_id: UBERON:FMA_51227-MA_0002093 def: "Cerebellar veins are veins which drain the cerebellum. More specifically, they are: Superior cerebellar veins Inferior cerebellar veins [WP,unvetted]." [Wikipedia:Cerebellar_veins] comment: This class was created automatically from a combination of ontologies synonym: "cerebellum vein" EXACT [OBOL:automatic] synonym: "epencephalon-1 vein" EXACT [OBOL:automatic] synonym: "vein of cerebellum" EXACT [OBOL:automatic] synonym: "vein of epencephalon-1" EXACT [OBOL:automatic] xref: FMA:51227 xref: MA:0002093 xref: SCTID:40693009 xref: ncithesaurus:Cerebellar_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0009141 ! craniocervical region vein [Term] id: UBERON:0001669 name: superior cerebellar vein namespace: uberon alt_id: UBERON:FMA_51232-MA_0002095 def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Superior_cerebellar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "vein of superior cerebellar hemisphere" EXACT [] xref: FMA:51232 xref: MA:0002095 xref: SCTID:64307009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png is_a: UBERON:0001668 ! cerebellar vein [Term] id: UBERON:0001670 name: inferior cerebellar vein namespace: uberon alt_id: UBERON:FMA_51233-MA_0002094 def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior vein of cerebellar hemisphere" EXACT [] xref: FMA:51233 xref: MA:0002094 xref: SCTID:69104006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png is_a: UBERON:0001668 ! cerebellar vein [Term] id: UBERON:0001671 name: temporal vein namespace: uberon alt_id: UBERON:FMA_51302-MA_0002239 def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Temporal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:51302 xref: MA:0002239 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: ncithesaurus:Temporal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001672 name: anterior cerebral vein namespace: uberon alt_id: UBERON:FMA_51306-ZFA_0001067 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ACeV" RELATED [] synonym: "rostral cerebral vein" RELATED [] xref: FMA:51306 xref: SCTID:55155007 xref: TAO:0001067 xref: XAO:0004158 xref: ZFA:0001067 is_a: UBERON:0001663 ! cerebral vein is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: UBERON:0001673 name: central retinal vein namespace: uberon alt_id: UBERON:FMA_51799-MA_0002213 def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [Wikipedia:Central_retinal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "retinal vein" EXACT [] xref: FMA:51799 xref: GAID:524 xref: MA:0002213 xref: MESH:A.07.231.611.773 xref: SCTID:280913005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray572.png/200px-Gray572.png xref: ncithesaurus:Retinal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001674 name: masseteric vein namespace: uberon alt_id: UBERON:FMA_52519-MA_0002167 comment: This class was created automatically from a combination of ontologies xref: FMA:52519 xref: MA:0002167 xref: ncithesaurus:Masseteric_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001675 name: trigeminal ganglion namespace: uberon alt_id: UBERON:FMA_52618-XAO_0000427-XAO_0000428-ZFA_0000295 def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [Wikipedia:Trigeminal_ganglion, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "5th ganglion" EXACT [ZFA:0000295] synonym: "Gasser's ganglion" RELATED [BTO:0001231] synonym: "fifth ganglion" EXACT [ZFA:0000295] synonym: "gV" RELATED [] synonym: "ganglion of trigeminal nerve" RELATED [BTO:0001231] synonym: "ganglion trigeminale" RELATED [BTO:0001231] synonym: "gasserian ganglia" RELATED PLURAL [Wikipedia:Trigeminal_ganglion] synonym: "gasserian ganglion" EXACT [Wikipedia:Trigeminal_ganglion] synonym: "semilunar ganglion" EXACT [] synonym: "trigeminal V ganglion" EXACT [MA:0001080] synonym: "trigeminal ganglia" RELATED PLURAL [] synonym: "trigeminus ganglion" RELATED [] xref: AAO:0011107 xref: BTO:0001231 xref: EFO:0000903 xref: EHDAA2:0002085 xref: EHDAA:2113 xref: EMAPA:16797 xref: FMA:52618 xref: GAID:725 xref: MA:0001080 xref: MAT:0000511 xref: MESH:A.08.340.390.850 xref: SCTID:244449009 xref: TAO:0000295 xref: VHOG:0000694 xref: XAO:0000427 xref: XAO:0000428 xref: ZFA:0000295 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png xref: ncithesaurus:Trigeminal_Ganglion is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0001676 name: occipital bone namespace: uberon alt_id: UBERON:FMA_52735-MA_0001468 def: "A saucer-shaped membrane bone situated at the back and lower part of the cranium, is trapezoid in shape and curved on itself. It is pierced by a large oval aperture, the foramen magnum, through which the cranial cavity communicates with the vertebral canal." [Wikipedia:Occipital_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:25112 xref: FMA:52735 xref: GAID:227 xref: MA:0001468 xref: MESH:A.02.835.232.781.572 xref: OpenCyc:Mx4rwQtsiZwpEbGdrcN5Y29ycA xref: SCTID:181796003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray194.png/200px-Gray194.png xref: ncithesaurus:Occipital_Bone is_a: UBERON:0001474 ! bone is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001677 name: sphenoid bone namespace: uberon alt_id: UBERON:FMA_52736-MA_0001472 def: "an unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [Wikipedia:Sphenoid_bone] comment: part of viscerocranium in FMA, part of chondrocranium in MA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "butterfly bone" RELATED [Wikipedia:Sphenoid_bone] synonym: "os sphenoidale" EXACT [FMA:52736, FMA:TA, Wikipedia:Sphenoid_bone] synonym: "os sphenoidum" RELATED [Wikipedia:Sphenoid_bone] synonym: "sphenoid" EXACT [] synonym: "sphenoidal bone" EXACT [] xref: EMAPA:18340 xref: FMA:52736 xref: GAID:230 xref: MA:0001472 xref: MESH:A.02.835.232.781.802 xref: OpenCyc:Mx4rwAU9XpwpEbGdrcN5Y29ycA xref: SCTID:272676008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg xref: ncithesaurus:Sphenoid_Bone is_a: UBERON:0003465 ! chondrocranium bone is_a: UBERON:0008193 ! pneumatized bone relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001678 name: temporal bone namespace: uberon alt_id: UBERON:FMA_52737-MA_0001476 def: "The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum." [Wikipedia:Temporal_bone] comment: The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part. Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA:6035 xref: EMAPA:17682 xref: EMAPA:18020 xref: FMA:52737 xref: GAID:232 xref: MA:0001476 xref: MESH:A.02.835.232.781.885 xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA xref: SCTID:181795004 xref: VHOG:0000800 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg xref: ncithesaurus:Temporal_Bone is_a: UBERON:0003465 ! chondrocranium bone is_a: UBERON:0008193 ! pneumatized bone relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001679 name: ethmoid namespace: uberon alt_id: UBERON:FMA_52740-MA_0001483-ZFA_0000323 def: "a bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]" [Wikipedia:Ethmoid] comment: AO notes: Note the WP states the Neurocranium contains the ethmoid bone, both MA and FMA place the ethmoid as part of the viscerocranium. FMA also has it in neurocranium (via basicranium). Ideally we would have non-overlapping divisions of the skull, but for now we follow FMA. Taxon notes: todo - homology e.g. mesethmoid of teleost subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ethmoid bone" EXACT [] synonym: "ethmoidal bone" EXACT [MP:0000101] synonym: "os ethmoidale" EXACT [FMA:52740, FMA:TA] xref: BTO:0004140 xref: EMAPA:19018 xref: FMA:52740 xref: GAID:212 xref: MA:0001483 xref: MESH:A.02.835.232.781.292 xref: OpenCyc:Mx4rvuUPh5wpEbGdrcN5Y29ycA xref: SCTID:272674006 xref: VHOG:0001317 xref: ncithesaurus:Ethmoid_Bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004766 ! cranial bone is_a: UBERON:0008193 ! pneumatized bone relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0002517 ! basicranium [Term] id: UBERON:0001680 name: lacrimal bone namespace: uberon alt_id: UBERON:FMA_52741-MA_0001486 def: "the smallest and most fragile bone of the face, is situated at the front part of the medial wall of the orbit. It has two surfaces and four borders. In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species." [Wikipedia:Lacrimal_bone] comment: In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[WP, ISBN 0-03-910284-X] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "infraorbital 1" RELATED SENSU [VHOG:0001149, ZFA:0000223] synonym: "lacrimal" BROAD [] synonym: "lacrymal bone" EXACT [] xref: FMA:52741 xref: MA:0001486 xref: SCTID:272675007 xref: VHOG:0001149 xref: ZFA:0000223 xref: ncithesaurus:Lacrimal_Bone is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0008907 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermal bone relationship: part_of UBERON:0001704 ! viscerocranium property_value: "dubious_for_taxon" NCBITaxon:8292 [Term] id: UBERON:0001681 name: nasal bone namespace: uberon alt_id: UBERON:FMA_52745-MA_0001494-ZFA_0000365 def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [Wikipedia:Nasal_bone, ZFIN:curator] comment: In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0000312 xref: EMAPA:19202 xref: FMA:52745 xref: GAID:222 xref: MA:0001494 xref: MESH:A.02.835.232.781.324.665 xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA xref: SCTID:181801008 xref: TAO:0000365 xref: VHOG:0001370 xref: ZFA:0000365 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg xref: ncithesaurus:Nasal_Bone is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008907 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermal bone relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0003112 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory region relationship: part_of UBERON:0003113 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermatocranium [Term] id: UBERON:0001682 name: palatine bone namespace: uberon alt_id: UBERON:FMA_52746-MA_0001495 def: "A bone situated at the back part of the nasal cavity between the maxilla and the pterygoid process of the sphenoid. It contributes to the walls of three cavities: the floor and lateral wall of the nasal cavity, the roof of the mouth, and the floor of the orbit; it enters into the formation of two fossC&, the pterygopalatine and pterygoid fossC&; and one fissure, the inferior orbital fissure. he palatine bone somewhat resembles the letter L, and consists of a Horizontal plate of palatine bone and a Perpendicular plate of palatine bone and three outstanding processesbviz., the Pyramidal process of palatine bone, which is directed backward and lateralward from the junction of the two parts, and the Orbital process of palatine bone and Sphenoidal process of palatine bone, which surmount the vertical part, and are separated by a deep notch, the sphenopalatine notch. The human palatine articulates with six bones: the sphenoid, ethmoid, maxilla, inferior nasal concha, vomer and opposite palatine. In bony fish the palatine bone consists of the perpendicular plate only, lying on the inner edge of the maxilla[WP]." [Wikipedia:Palatine_bone] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:52746 xref: MA:0001495 xref: SCTID:244654005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Gray996.png/200px-Gray996.png xref: ncithesaurus:Palatine_Bone is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001683 name: zygomatic bone namespace: uberon alt_id: UBERON:FMA_52747-MA_0001497 def: "The zygomatic bone (cheekbone, malar bone) is a paired bone of the human skull. It articulates with the maxilla, the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae [Fig. 1]. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders. The term zygomatic derives from the Greek zygoma meaning 'yoke'. The zygomatic bone is occasionally referred to as the zygoma, but this term may also refer to the zygomatic arch or the zygomatic process. [WP,unvetted]." [Wikipedia:Zygomatic_bone] comment: HOG says is homologous to infraorbital 3, which is a dermal bone in dermatocranium. part of viscerocranium, chondrocranium in MA. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cheek bone" EXACT [] synonym: "jugal bone" RELATED [GAID:225, Wikipedia:Zygomatic_bone] synonym: "jugale" RELATED SENSU [] synonym: "malar bone" EXACT [FMA:52747] synonym: "orbital bone" EXACT [] synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA] synonym: "os zygomaticus" RELATED [Wikipedia:Zygomatic_bone] synonym: "zygoma" RELATED [GAID:225] xref: EMAPA:25111 xref: FMA:52747 xref: GAID:225 xref: MA:0001497 xref: SCTID:272683001 xref: VHOG:0001638 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray164.png/200px-Gray164.png is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0003465 ! chondrocranium bone is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001684 name: mandible namespace: uberon alt_id: UBERON:FMA_52748-MA_0001487 def: "The bone that forms the lower jaw and holds the lower teeth in place[WP]." [Wikipedia:Human_mandible, Wikipedia:Mandible] comment: 'mandible' also refers to either the upper or lower part of the beak in birds. Note in ZFA mandible/lower jaw are the same class. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior maxillary bone" EXACT [] synonym: "lower jaw bone" BROAD SENSU [] synonym: "lower mandibula" NARROW SENSU [Wikipedia:Mandible] synonym: "mandibula" RELATED [BTO:0001748] synonym: "mandibulla" EXACT [] xref: BTO:0001748 xref: EFO:0001965 xref: EHDAA2:0001059 xref: EHDAA:8007 xref: EMAPA:18290 xref: FMA:52748 xref: GAID:68 xref: MA:0001487 xref: MESH:A.02.835.232.781.324.502.632 xref: SCTID:181812008 xref: VHOG:0000510 xref: galen:Mandible xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png xref: ncithesaurus:Mandible is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0001685 name: hyoid bone namespace: uberon alt_id: UBERON:FMA_52749-MA_0001484 def: "The hyoid bone (lingual bone) (Latin os hyoideum) is a horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. At rest, it lies at the level of the base of the mandible in the front and the third cervical vertebra behind. It is the only bone in the human skeleton not articulated to any other bone. It is held in place by thyroid ligaments. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. Its name is derived from the Greek word hyoeides meaning 'shaped like the letter upsilon' (O). [WP,unvetted]." [Wikipedia:Hyoid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "greater cornua" RELATED [Wikipedia:Hyoid_bone] synonym: "greater horn of the hyoid" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoid" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoid bone" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoideum" RELATED [Wikipedia:Hyoid_bone] synonym: "lingual bone" RELATED [Wikipedia:Hyoid_bone] synonym: "os hyoideum" RELATED [Wikipedia:Hyoid_bone] xref: AAO:0000684 xref: EMAPA:18650 xref: EMAPA:18840 xref: FMA:52749 xref: GAID:197 xref: MA:0001484 xref: MESH:A.02.835.232.409 xref: SCTID:263352000 xref: VHOG:0001325 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png xref: ncithesaurus:Hyoid_Bone is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001686 name: auditory ossicle namespace: uberon alt_id: UBERON:FMA_52750-MA_0000254-XAO_0000214 def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [Wikipedia:Auditory_ossicle] comment: Taxon and editor notes: This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auditory bone" EXACT [] synonym: "auditory ossicle" RELATED [MA:0000254] synonym: "ear bone" RELATED [MA:0000254] synonym: "middle ear bone" RELATED [] synonym: "middle ear ossicle" EXACT [UBERON:cjm] synonym: "ossicle" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle] xref: AAO:0011015 xref: EHDAA2:0001183 xref: EHDAA:5697 xref: EMAPA:17824 xref: EV:0100360 xref: FMA:52750 xref: MA:0000254 xref: VHOG:0000461 xref: VHOG:0000688 xref: XAO:0000214 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Illu_auditory_ossicles.jpg/200px-Illu_auditory_ossicles.jpg xref: ncithesaurus:Auditory_Ossicle is_a: UBERON:0003457 ! head bone is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0001687 name: stapes namespace: uberon alt_id: UBERON:FMA_52751-MA_0001217 def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used. As the stapes first develops embryologically from the 6th to 8th wk of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure. [WP,unvetted]." [Wikipedia:Stapes] comment: Editor notes: we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): \"This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.\" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] synonym: "columellare" RELATED [AAO:0000580] synonym: "interstapediale" RELATED [AAO:0000580] synonym: "mediostapediale" RELATED [AAO:0000580] synonym: "mesostapediale" RELATED [AAO:0000580] synonym: "os columellare" RELATED [AAO:0000580] synonym: "os intermedium" RELATED [AAO:0000580] synonym: "stapes" RELATED [AAO:0000580] synonym: "stelidium" RELATED [AAO:0000580] synonym: "stilus columellare" RELATED [AAO:0000580] synonym: "stirrup" EXACT [] xref: EMAPA:18585 xref: FMA:52751 xref: GAID:868 xref: MA:0001217 xref: MESH:A.09.246.397.247.806 xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA xref: SCTID:264199009 xref: VHOG:0000688 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray918.png/200px-Gray918.png xref: ncithesaurus:Stapes is_a: UBERON:0001686 ! auditory ossicle property_value: "homologous_to" AAO:0000580 property_value: "homologous_to" ZFA:0000672 [Term] id: UBERON:0001688 name: incus namespace: uberon alt_id: UBERON:FMA_52752-MA_0001215 def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] comment: TODO - check develops from and homology subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 xref: FMA:52752 xref: GAID:866 xref: MA:0001215 xref: MESH:A.09.246.397.247.362 xref: SCTID:272649008 xref: VHOG:0000689 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px-Gray917.png xref: ncithesaurus:Incus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone [Term] id: UBERON:0001689 name: malleus namespace: uberon alt_id: UBERON:FMA_52753-MA_0001216 def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 xref: MA:0001216 xref: MESH:A.09.246.397.247.524 xref: SCTID:264090005 xref: VHOG:0000690 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png xref: ncithesaurus:Malleus is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0001690 name: ear namespace: uberon alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138 def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auditory apparatus" RELATED [] synonym: "auris" RELATED [BTO:0000368] xref: AAO:0011014 xref: BTO:0000368 xref: EFO:0000826 xref: EHDAA2:0000423 xref: EHDAA:502 xref: EMAPA:16193 xref: EV:0100353 xref: FMA:52780 xref: GAID:62 xref: MA:0000236 xref: MAT:0000138 xref: MESH:A.01.456.313 xref: MIAA:0000138 xref: NIF_GrossAnatomy:birnlex_1062 xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA xref: SCTID:1910005 xref: VHOG:0000330 xref: XAO:0000189 xref: galen:Ear xref: ncithesaurus:Ear is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0002105 ! vestibulo-auditory system relationship: develops_from UBERON:0003051 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ear vesicle relationship: part_of UBERON:0001456 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! face [Term] id: UBERON:0001691 name: external ear namespace: uberon alt_id: UBERON:FMA_52781-MA_0000258-MIAA_0000147-XAO_0000190 def: "Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auricular region" BROAD [] synonym: "auricular region of head" EXACT [] synonym: "auris externa" RELATED [BTO:0002100] synonym: "outer ear" EXACT [] xref: AAO:0011037 xref: BTO:0002100 xref: EHDAA2:0000462 xref: EHDAA:3786 xref: EHDAA:5343 xref: EHDAA:5352 xref: EMAPA:16991 xref: EV:0100354 xref: FMA:52781 xref: GAID:104 xref: MA:0000258 xref: MAT:0000147 xref: MESH:A.09.246.272 xref: MIAA:0000147 xref: NIF_GrossAnatomy:birnlex_1705 xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA xref: SCTID:181176000 xref: VHOG:0000311 xref: XAO:0000190 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Gray907.png/200px-Gray907.png xref: ncithesaurus:External_Ear is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0003102 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! surface structure relationship: part_of UBERON:0001690 ! ear disjoint_from: UBERON:0006618 ! atrium auricular region [Term] id: UBERON:0001692 name: basioccipital bone namespace: uberon alt_id: UBERON:FMA_52858-MA_0001462-ZFA_0000472 def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials[ZFA]." [Wikipedia:Basilar_part_of_occipital_bone, ZFIN:curator] comment: TODO - check FMA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "basilar part of occipital bone" EXACT [] synonym: "basioccipital" EXACT [] xref: AAO:0000039 xref: EMAPA:18705 xref: FMA:52858 xref: MA:0001462 xref: SCTID:138976007 xref: TAO:0000472 xref: VHOG:0001152 xref: ZFA:0000472 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/Parsbasilaris%28young%29.PNG/200px-Parsbasilaris%28young%29.PNG is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001676 ! occipital bone relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0002517 ! basicranium relationship: develops_from UBERON:0009635 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! parachordal cartilage relationship: part_of UBERON:0005902 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! occipital region [Term] id: UBERON:0001693 name: exoccipital bone namespace: uberon alt_id: UBERON:FMA_52859-MA_0001464-ZFA_0000661 def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [Wikipedia:Lateral_parts_of_occipital_bone, ZFIN:curator] comment: TODO - check FMA - currently we place this as both of a zone of bone organ and an (endochondral) bone. Removed endochondral bone classification for now, violates disjointness axiom subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "exoccipital" EXACT [] synonym: "lateral part of occipital bone" EXACT [] xref: AAO:0000147 xref: EMAPA:18708 xref: FMA:52859 xref: MA:0001464 xref: SCTID:139279001 xref: TAO:0000661 xref: VHOG:0001151 xref: ZFA:0000661 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Gray131.png/200px-Gray131.png is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0002513 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! endochondral bone is_a: UBERON:0003465 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! chondrocranium bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: develops_from UBERON:0009635 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! parachordal cartilage relationship: part_of UBERON:0005902 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! occipital region [Term] id: UBERON:0001694 name: petrous part of temporal bone namespace: uberon alt_id: UBERON:FMA_52871-MA_0001477 def: "The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pars petrosa (os temporale)" EXACT [] synonym: "petromastoid part of temporal bone" EXACT [] synonym: "petrosal bone" EXACT [] synonym: "petrous bone" EXACT [] synonym: "temporal bone petrous part" EXACT [] xref: EHDAA2:0001452 xref: EMAPA:17683 xref: FMA:52871 xref: GAID:234 xref: MA:0001477 xref: MESH:A.02.835.232.781.885.681 xref: SCTID:361733004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0001695 name: squamous part of temporal bone namespace: uberon alt_id: UBERON:FMA_52883-MA_0001473 def: "the thin, platelike part of the temporal bone." [MP:0004423] comment: This class was created automatically from a combination of ontologies synonym: "pars squamosa (os temporale)" EXACT [] synonym: "squamosal" EXACT [AAO:0000574] synonym: "squamosal bone" EXACT [] synonym: "squamous bone" EXACT [] xref: AAO:0000574 xref: EMAPA:18021 xref: FMA:52883 xref: MA:0001473 xref: SCTID:138672006 is_a: UBERON:0001474 ! bone is_a: UBERON:0003465 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! chondrocranium bone [Term] id: UBERON:0001697 name: orbit namespace: uberon alt_id: UBERON:FMA_53074-MA_0002482 def: "the orbital bone is the cavity or socket of the skull in which the eye and its appendages are situated." [Wikipedia:Orbit_(anatomy)] comment: Editor note: check orbit sensu bone vs orbital region subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "eye socket" EXACT [] synonym: "orbit of skull" EXACT [FMA:53074] xref: AAO:0000343 xref: BTO:0004687 xref: FMA:53074 xref: GAID:223 xref: MA:0002482 xref: MESH:A.02.835.232.781.324.690 xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA xref: XAO:0003171 xref: ZFA:0001410 xref: galen:Orbit xref: ncithesaurus:Orbit is_a: UBERON:0001474 ! bone is_a: UBERON:0004766 ! cranial bone relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0001698 name: foramen ovale of skull namespace: uberon alt_id: UBERON:FMA_53155-MA_0001873 def: "one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [Wikipedia:Foramen_ovale_(skull)] synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155] synonym: "foramen ovale (skull)" EXACT [FMA:53155] synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii] xref: AAO:0000169 xref: EHDAA2:0000551 xref: EHDAA:10627 xref: EMAPA:18711 xref: FMA:53155 xref: VHOG:0001189 xref: galen:ForamenOvaleBasisCranii xref: ncithesaurus:Oval_Foramen is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0003129 ! skull disjoint_from: UBERON:0004754 ! foramen ovale of heart [Term] id: UBERON:0001699 name: sensory root of facial nerve namespace: uberon alt_id: UBERON:FMA_53410-ZFA_0000679 def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [Wikipedia:Intermediate_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Wrisberg's nerve" EXACT [] synonym: "intermediate nerve" EXACT [] synonym: "nervus intermedius" EXACT [FMA:53410, FMA:TA] xref: FMA:53410 xref: SCTID:279927001 xref: TAO:0000679 xref: ZFA:0000679 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0004674 ! facial nerve root relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0001700 name: geniculate ganglion namespace: uberon alt_id: UBERON:FMA_53414-MA_0001076-ZFA_0001291 def: "The geniculate ganglion is an L-shaped collection of fibers and sensory neurons of the facial nerve located in the facial canal of the head. It receives fibers from the motor, sensory, and parasympathetic components of the facial nerve and sends fibers that will innervate the lacrimal glands, submandibular glands, sublingual glands, tongue, palate, pharynx, external auditory meatus, stapedius, posterior belly of the digastric muscle, stylohyoid muscle, and muscles of facial expression. Sensory and parasympathetic inputs are carried into the geniculate ganglion via the nervus intermedius. Motor fibers are carried via the facial nerve proper. The greater petrosal nerve, which carries sensory fibers as well as preganglionic parasympathetic fibers, emerges from the anterior aspect of the ganglion. The geniculate ganglion is one of several ganglia of the head and neck. Like the others, it is a bilaterally distributed structure, with each side of the face having a geniculate ganglion. [WP,unvetted]." [Wikipedia:Geniculate_ganglion] comment: Editor notes: resolve facial VII vs geniculate (see EHDAA2) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "facial VII ganglion" EXACT [] synonym: "facial ganglion" EXACT [] synonym: "gVII" RELATED [] synonym: "ganglion genicularum" EXACT [] synonym: "genicular ganglion" EXACT [] xref: EFO:0003669 xref: EHDAA2:0000491 xref: EHDAA2:0004623 xref: EHDAA:5567 xref: EHDAA:6644 xref: EMAPA:16983 xref: EMAPA:17569 xref: FMA:53414 xref: GAID:718 xref: MA:0001076 xref: MESH:A.08.340.390.380 xref: SCTID:279076005 xref: TAO:0001291 xref: VHOG:0000707 xref: ZFA:0001291 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png xref: ncithesaurus:Geniculate_Ganglion is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0009127 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! epibranchial ganglion relationship: develops_from UBERON:0009124 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! geniculate placode [Term] id: UBERON:0001701 name: glossopharyngeal ganglion namespace: uberon alt_id: UBERON:FMA_53471-ZFA_0001301 def: "the group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001096] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "gIX" RELATED [] synonym: "ganglion of glosspharyngeal nerve" EXACT [] synonym: "glossopharyngeal IX ganglion" EXACT [MA:0001077] synonym: "petrosal ganglion" NARROW [ZFA:0001301] xref: EHDAA2:0000710 xref: EHDAA:2838 xref: EMAPA:16795 xref: FMA:53471 xref: MA:0001077 xref: SCTID:244451008 xref: TAO:0001301 xref: VHOG:0000702 xref: ZFA:0001301 is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0009127 ! epibranchial ganglion [Term] id: UBERON:0001702 name: eyelash namespace: uberon alt_id: UBERON:FMA_53669-MA_0002702 def: "An eyelash or simply lash is one of the hairs that grow at the edge of the eyelid. Eyelashes protect the eye from debris and perform some of the same function as whiskers do on a cat or a mouse in the sense that they are sensitive to being touched, thus providing a warning that an object is near the eye (which is then closed reflexively). The greek word for eyelash is \"blepharis\". This word is often used as a root in biological terms" [Wikipedia:Eyelash] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:53669 xref: GAID:73 xref: MA:0002702 xref: MESH:A.01.456.505.420.504.421 xref: OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA xref: SCTID:244201001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/N2_Human_eye.jpg/200px-N2_Human_eye.jpg xref: ncithesaurus:Eyelash is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0001703 name: neurocranium namespace: uberon alt_id: UBERON:FMA_53672-ZFA_0001580 def: "Portion of the skull which encloses the brain and special sense organs. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification." [Grays:Grays, Wikipedia:Neuroranium, ZFA:0001580] comment: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ... subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "brain box" EXACT [] synonym: "brain case" RELATED [ZFA:0001580] synonym: "brain pan" RELATED [http://www.thefreedictionary.com/braincase] synonym: "braincase" RELATED [ZFA:0001580] xref: AAO:0010153 xref: EHDAA2:0000243 xref: FMA:53672 xref: MA:0000317 xref: SCTID:361731002 xref: TAO:0001580 xref: XAO:0003170 xref: ZFA:0001580 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0001704 name: viscerocranium namespace: uberon alt_id: UBERON:FMA_53673-MA_0000318 def: "The part of skull that is derived from branchial arches. The facial bones are the bones of the anterior and lower human skull. The splanchnocranium is derived from the neural crest cells (also responsible for the development of the neurocranium or, teeth and adrenal medulla)or from scleratone found in the somite block of the mesoderm. As with the neurocranium, in Chondricthyes and other cartilaginous vertebrates, they are not replaced via endochondral ossification. In tetrapods, such as amphibians and reptiles, the columella connecting to the tympanum is derived from the splanchnocranium. in mammals, the splanchnocranium derives the bones of the inner ear, the malleus, the incus and stapes[WP]. the part of the skull that comprises the facial bones[MP]." [MP:0005274, Wikipedia:Facial_skeleton] comment: Includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it)[WP] See also notes for ethmoid bone. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "facial bone" RELATED [MA:0000318] synonym: "facial skeleton" EXACT [] synonym: "pharyngeal arch skeleton" RELATED [ZFA:0001216] synonym: "pharyngeal skeleton" RELATED [ZFA:0001216] synonym: "splanchnocranium" EXACT [VHOG:0000315, Wikipedia:Viscerocranium, ZFA:0001216] xref: AAO:0010157 xref: EHDAA2:0002206 xref: EHDAA:8361 xref: EMAPA:18022 xref: FMA:53673 xref: MA:0000318 xref: VHOG:0000315 xref: XAO:0003176 xref: ZFA:0001216 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0003128 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cranium relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0003129 ! skull relationship: part_of UBERON:0003128 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! cranium relationship: part_of UBERON:0003128 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranium [Term] id: UBERON:0001705 name: nail namespace: uberon alt_id: UBERON:FMA_54326-MA_0002703-MIAA_0000158 def: "a horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]." [Wikipedia:Nail_(anatomy)] comment: TODO: check claw vs nail. A primate's nail consists of the unguis alone; the subunguis has disappeared. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "claw" RELATED [] synonym: "talon" RELATED [] xref: BTO:0001719 xref: EFO:0000956 xref: EMAPA:18734 xref: EMAPA:18735 xref: EMAPA:18736 xref: EMAPA:18737 xref: EMAPA:18738 xref: EMAPA:18739 xref: EMAPA:18740 xref: EMAPA:18741 xref: EMAPA:18742 xref: EMAPA:18743 xref: EV:0100159 xref: FMA:54326 xref: GAID:1320 xref: MA:0002703 xref: MAT:0000158 xref: MESH:A.17.600 xref: MIAA:0000158 xref: OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA xref: SCTID:72651009 xref: VHOG:0001361 xref: XAO:0003103 xref: galen:Nail xref: ncithesaurus:Nail is_a: UBERON:0009564 ! distal limb integumentary appendage is_a: UBERON:0000476 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! acellular anatomical structure relationship: part_of UBERON:0001003 ! epidermis relationship: part_of UBERON:0002097 ! skin of body relationship: part_of UBERON:0002103 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hindlimb [Term] id: UBERON:0001706 name: nasal septum namespace: uberon alt_id: UBERON:FMA_54375-MA_0000285 def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010135 xref: EHDAA2:0001234 xref: EHDAA2:0004104 xref: EHDAA:6809 xref: EMAPA:17608 xref: FMA:54375 xref: GAID:115 xref: MA:0000285 xref: MESH:A.02.165.639 xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA xref: SCTID:181197004 xref: VHOG:0000017 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray854.png/200px-Gray854.png xref: ncithesaurus:Nasal_Septum is_a: UBERON:0003037 ! septum is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0001707 name: nasal cavity namespace: uberon alt_id: UBERON:FMA_54378-MA_0000284-ZFA_0000130 def: "a large air filled space above and behind the nose in the middle of the face[WP]." [Wikipedia:Nasal_cavity] comment: the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures[HP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cavitas nasalis" RELATED [BTO:0002096] synonym: "cavitas nasi" RELATED [BTO:0002096] synonym: "cavity of nose" EXACT [] synonym: "nasal canal" EXACT [ZFA:0000130] synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity] synonym: "nasal pit" RELATED [] synonym: "olfactory cavity" RELATED [] synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130] xref: AAO:0000314 xref: BTO:0002096 xref: EHDAA2:0001226 xref: EHDAA:6801 xref: EMAPA:17604 xref: FMA:54378 xref: GAID:350 xref: MA:0000284 xref: MESH:A.04.531.449 xref: SCTID:263481003 xref: TAO:0000130 xref: VHOG:0000271 xref: ZFA:0000130 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg xref: ncithesaurus:Nasal_Cavity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001708 name: jaw namespace: uberon alt_id: UBERON:FMA_54396-MA_0001905-ZFA_0001227 def: "Bony structure of the mouth that holds the teeth. It consists of the MANDIBLE and the MAXILLA[MESH]." [Wikipedia:Jaw] comment: Editor notes: in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA. It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates. Development notes: There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983). Function notes: consider adding a generic grouping class such as 'articulated structure of mouth' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "jaw cartilage" EXACT [ZFA:0001227] synonym: "jaws" RELATED [] synonym: "mandibular arch" RELATED [] synonym: "mandibular arch skeleton" EXACT [ZFA:0001227] synonym: "oral jaw skeleton" RELATED [] synonym: "pharyngeal arch 1 skeleton" RELATED [] synonym: "visceral arch 1" RELATED [] xref: AAO:0000988 xref: BTO:0001749 xref: FMA:54396 xref: GAID:214 xref: MA:0001905 xref: MESH:A.02.835.232.781.324.502 xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA xref: TAO:0001227 xref: ZFA:0001227 xref: galen:Jaw xref: ncithesaurus:Jaw is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0004089 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! midface relationship: part_of UBERON:0004362 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mandibular arch [Term] id: UBERON:0001709 name: upper jaw namespace: uberon alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272 def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator] comment: Note isa/partof difference MA/FMA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal mandibular arch" RELATED [] synonym: "dorsal visceral arch 1" EXACT [ZFA:0001272] synonym: "palatoquadrate arch" EXACT [] synonym: "upper pharyngeal jaw" EXACT [ZFA:0001272] synonym: "upper pharyngeal jaws" RELATED [] xref: AAO:0000620 xref: EFO:0003659 xref: EHDAA2:0002118 xref: EHDAA:8025 xref: EMAPA:17924 xref: FMA:54397 xref: MA:0001908 xref: TAO:0001272 xref: VHOG:0000454 xref: XAO:0003087 xref: ZFA:0001272 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png xref: ncithesaurus:Upper_Jaw is_a: UBERON:0001708 ! jaw relationship: part_of UBERON:0004089 ! midface relationship: part_of UBERON:0000166 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! oral opening relationship: part_of UBERON:0003108 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! suspensorium relationship: part_of UBERON:0003128 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cranium [Term] id: UBERON:0001710 name: lower jaw namespace: uberon alt_id: UBERON:FMA_54398-MA_0001906-XAO_0003084-ZFA_0001273 def: "." [Wikipedia:Lower_jaw] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mandible" RELATED [] synonym: "mandibular series" RELATED [] synonym: "ventral mandibular arch" EXACT [] xref: AAO:0000272 xref: EFO:0003660 xref: EHDAA2:0001018 xref: EHDAA2:0001059 xref: EHDAA:7995 xref: EMAPA:17906 xref: EMAPA:18290 xref: FMA:54398 xref: MA:0001906 xref: MESH:A.02.835.232.781.324.502.632 xref: TAO:0001273 xref: VHOG:0000453 xref: XAO:0003084 xref: ZFA:0001273 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png xref: ncithesaurus:Lower_Jaw is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001708 ! jaw relationship: part_of UBERON:0003128 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cranium [Term] id: UBERON:0001711 name: eyelid namespace: uberon alt_id: UBERON:FMA_54437-MA_0000268 def: "An eyelid is a thin fold of skin that covers and protects an eye. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]." [Wikipedia:Eyelid] comment: AO notes: FMA divides this into skin, fascia, conjunctiva. In FMA, this is part of the \"eye\", which is distinct from the \"eyeball\" subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "blepharon" EXACT [] synonym: "palpebra" RELATED [] xref: BTO:0002241 xref: EHDAA2:0000487 xref: EHDAA:9037 xref: EMAPA:17829 xref: EV:0100338 xref: FMA:54437 xref: GAID:72 xref: MA:0000268 xref: MESH:A.01.456.505.420.504 xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA xref: SCTID:265782007 xref: VHOG:0000016 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg xref: ncithesaurus:Eyelid is_a: UBERON:0000014 ! zone of skin is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0004088 ! ocular region [Term] id: UBERON:0001712 name: upper eyelid namespace: uberon alt_id: UBERON:FMA_54439-MA_0001267 comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "palpebra superior" EXACT [FMA:54439, FMA:TA] synonym: "superior eyelid" EXACT [] xref: EHDAA2:0002115 xref: EHDAA:9047 xref: EMAPA:17834 xref: FMA:54439 xref: MA:0001267 xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA xref: SCTID:244499008 xref: VHOG:0000389 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg xref: ncithesaurus:Upper_Eyelid is_a: UBERON:0001711 ! eyelid [Term] id: UBERON:0001713 name: lower eyelid namespace: uberon alt_id: UBERON:FMA_54442-MA_0001263-XAO_0000007 comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior eyelid" EXACT [] synonym: "palpebra inferior" EXACT [FMA:54442, FMA:TA] xref: AAO:0010349 xref: EHDAA2:0001015 xref: EHDAA:9041 xref: EMAPA:17831 xref: FMA:54442 xref: MA:0001263 xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA xref: SCTID:362528002 xref: VHOG:0000388 xref: XAO:0000007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg xref: ncithesaurus:Lower_Eyelid is_a: UBERON:0003102 ! surface structure is_a: UBERON:0001711 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! eyelid relationship: part_of UBERON:0000019 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! camera-type eye [Term] id: UBERON:0001714 name: cranial ganglion namespace: uberon alt_id: UBERON:0003213 def: "Ganglion of a cranial nerve[cjm]." [Wikipedia:Cranial_nerve_ganglion] comment: Editor note: split out MA ter,. Note the MA term is part of the CNS. This needs to be checked w.r.t relationship between ganglia and the PNS, as the PNS and CNS are spatially disjoint. also meaning of MA term is not clear (appears to be union of nerve and ganglion, but MA 'cranial nerve' is unconnected) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cranial ganglia" RELATED [] synonym: "cranial ganglion" EXACT [] synonym: "cranial ganglion/nerve" EXACT [] synonym: "cranial nerve ganglion" EXACT [] synonym: "cranial neural ganglion" EXACT [] synonym: "cranial neural tree organ ganglion" EXACT [OBOL:automatic] synonym: "ganglion of cranial nerve" EXACT [FMA:54502] synonym: "ganglion of cranial neural tree organ" EXACT [OBOL:automatic] synonym: "head ganglion" RELATED [] synonym: "presumptive cranial ganglia" RELATED [ZFA:0000013] xref: BTO:0000106 xref: EFO:0000902 xref: EMAPA:16659 xref: FMA:54502 xref: MA:0000213 xref: MA:0000214 xref: MAT:0000200 xref: MIAA:0000200 xref: SCTID:244448001 xref: TAO:0000013 xref: VHOG:0000076 xref: XAO:0000027 xref: ZFA:0000013 is_a: UBERON:0000045 ! ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001017 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! central nervous system [Term] id: UBERON:0001715 name: oculomotor nuclear complex namespace: uberon alt_id: UBERON:FMA_54510-ZFA_0000553 def: "The fibers of the oculomotor nerve arise from a nucleus in the midbrain, which lies in the gray substance of the floor of the cerebral aqueduct and extends in front of the aqueduct for a short distance into the floor of the third ventricle. From this nucleus the fibers pass forward through the tegmentum, the red nucleus, and the medial part of the substantia nigra, forming a series of curves with a lateral convexity, and emerge from the oculomotor sulcus on the medial side of the cerebral peduncle. The nucleus of the oculomotor nerve does not consist of a continuous column of cells, but is broken up into a number of smaller nuclei, which are arranged in two groups, anterior and posterior. Those of the posterior group are six in number, five of which are symmetrical on the two sides of the middle line, while the sixth is centrally placed and is common to the nerves of both sides. The anterior group consists of two nuclei, an antero-medial and an antero-lateral . The nucleus of the oculomotor nerve, considered from a physiological standpoint, can be subdivided into several smaller groups of cells, each group controlling a particular muscle. A nearby nucleus, the Edinger-Westphal nucleus, is responsible for the autonomic functions of the oculomotor nerve, including pupillary constriction and lens accommodation. [WP,unvetted]." [Wikipedia:Nucleus_of_oculomotor_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "motor nucleus III" RELATED [] synonym: "nIII" RELATED [] synonym: "nucleus nervi oculomotorii" EXACT [FMA:54510, FMA:TA] synonym: "nucleus of oculomotor nerve" EXACT [] synonym: "nucleus of third cranial nerve" EXACT [] synonym: "oculomotor III nucleus" EXACT [MA:0001073] synonym: "oculomotor nucleus" EXACT [] synonym: "third cranial nerve nucleus" EXACT [] xref: ABA:III xref: BM:MB-III xref: EFO:0002468 xref: EHDAA2:0004211 xref: EV:0100250 xref: FMA:54510 xref: MA:0001073 xref: NIF_GrossAnatomy:birnlex_1240 xref: SCTID:362457000 xref: TAO:0000553 xref: VHOG:0001389 xref: ZFA:0000553 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: ncithesaurus:Oculomotor_Nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0001716 name: secondary palate namespace: uberon alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161 def: "Partition that separates the nasal and oral cavities[GO]. The palate is divided into two parts, the anterior bony hard palate, and the posterior fleshy soft palate or velum. The maxillary nerve branch of the trigeminal nerve (V) supplies sensory innervation to the palate[WP]." [GO:0060021, Wikipedia:Palate, Wikipedia:Secondary_palate] comment: present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "definitive palate" EXACT [EMAPA:18948] synonym: "oral roof" EXACT [] synonym: "palate" BROAD SENSU [EMAPA:18948, GO:0060021, MA:0002476] synonym: "roof of mouth" EXACT [] xref: BTO:0001779 xref: EMAPA:18948 xref: FMA:54549 xref: GAID:152 xref: MA:0002476 xref: MESH:A.14.521.658 xref: galen:Palate xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg xref: ncithesaurus:Palate is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0007375 ! palate relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0001717 name: spinal nucleus of trigeminal nerve namespace: uberon alt_id: UBERON:FMA_54565-MA_0001053 def: "The spinal trigeminal nucleus is a nucleus in the medulla that receives information about deep/crude touch, pain, and temperature from the ipsilateral face. The facial, glossopharyngeal, and vagus nerves also convey pain information from their areas to the spinal trigeminal nucleus. [WP,unvetted]." [Wikipedia:Spinal_trigeminal_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "spinal nucleus of cranial nerve v" EXACT [] synonym: "spinal trigeminal nucleus" EXACT [GO:0021741] synonym: "trigeminal nerve spinal tract nucleus" EXACT [] synonym: "trigeminal spinal nucleus" EXACT [] synonym: "trigeminal v spinal sensory nucleus" EXACT [] xref: BM:VSp xref: FMA:54565 xref: GAID:605 xref: MA:0001053 xref: MESH:A.08.186.211.132.931.920 xref: SCTID:369033006 xref: VHOG:0001357 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve is_a: UBERON:0004132 ! trigeminal sensory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0001718 name: mesencephalic nucleus of trigeminal nerve namespace: uberon alt_id: UBERON:FMA_54568-ZFA_0000312 def: "The mesencephalic nucleus is involved with proprioception of the face, that is, the feeling of position of the muscles. Unlike many nuclei within the CNS, the mesencephalic nucleus contains no chemical synapses but are electrically coupled. Instead, neurons of this nucleus are pseudounipolar cells receiving proprioceptive information from the jaw, and sending projections to the motor trigeminal nucleus to mediate monosynaptic jaw reflexes. It is also the only structure in the CNS to contain the cell bodies of a primary afferent, which are usually contained within ganglia. [WP,unvetted]." [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] comment: Development notes: develops from NC in some species[RCN:2012] Not of NC origin[doi:10.1002/dvdy.1197]. AO notes: part of midbrain tegmentum in NIF and MA. the neurons of the mesencephalic trigeminal nucleus are the only centrally located primary sensory neurons in amniotes; all others are extramedullary[PMID:11747082] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Me5" BROAD [NIF_GrossAnatomy:birnlex_1010] synonym: "mesencephalic nucleus" BROAD [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "mesencephalic trigeminal V nucleus" EXACT [] synonym: "mesencephalic trigeminal nucleus" EXACT [GO:0021739] synonym: "nucleus of mesencephalic root of v" EXACT [] synonym: "trigeminal V mesencephalic nucleus" EXACT [MA:0001057] synonym: "trigeminal mesencephalic nucleus" EXACT [] synonym: "trigeminal nerve mesencepahlic nucleus" EXACT [] xref: BM:Pons-5ME xref: EV:0100252 xref: FMA:54568 xref: MA:0001057 xref: NIF_GrossAnatomy:birnlex_1010 xref: SCTID:369032001 xref: TAO:0000312 xref: VHOG:0001354 xref: ZFA:0000312 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png is_a: UBERON:0004132 ! trigeminal sensory nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0001719 name: nucleus ambiguus namespace: uberon alt_id: UBERON:FMA_54588-MA_0001050 def: "The nucleus ambiguus (literally 'ambiguous nucleus') is a region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ambiguus nucleus" EXACT [] xref: ABA:AMB xref: BM:Me-AMB xref: EHDAA2:0004305 xref: EV:0100292 xref: FMA:54588 xref: MA:0001050 xref: NIF_GrossAnatomy:birnlex_2650 xref: SCTID:280184006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png xref: ncithesaurus:Nucleus_Ambiguus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0001720 name: cochlear nucleus namespace: uberon alt_id: UBERON:FMA_54603-ZFA_0001638 def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cochlear VIII nucleus" EXACT [MA:0001012] synonym: "cochlear nucleus of acoustic nerve" EXACT [] synonym: "cochlear nucleus of eighth cranial nerve" EXACT [] synonym: "nucleus of cochlear nerve" EXACT [] synonym: "statoacoustic (VIII) nucleus" EXACT [] synonym: "vestibulocochlear nucleus" RELATED [] xref: FMA:54603 xref: GAID:601 xref: MA:0001012 xref: MESH:A.08.186.211.132.810.428.600.135 xref: SCTID:362463009 xref: ZFA:0001638 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png xref: ncithesaurus:Cochlear_Nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0001721 name: inferior vestibular nucleus namespace: uberon alt_id: UBERON:FMA_54608-MA_0001054 def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "descending vestibular nucleus" EXACT [FMA:54608] synonym: "spinal vestibular nucleus" EXACT [FMA:54608] xref: ABA:SPIV xref: BM:Me-VS-VSI xref: BTO:0004369 xref: EV:0100258 xref: FMA:54608 xref: MA:0001054 xref: SCTID:280175006 xref: ncithesaurus:Spinal_Vestibular_Nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: "spatially_disjoint_from" UBERON:0001722 property_value: "spatially_disjoint_from" UBERON:0007227 property_value: "spatially_disjoint_from" UBERON:0007230 [Term] id: UBERON:0001722 name: medial vestibular nucleus namespace: uberon alt_id: UBERON:FMA_54611-MA_0001048 def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus bDeitersb)- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "chief vestibular nucleus" EXACT [FMA:54611] synonym: "dorsal vestibular nucleus" EXACT [FMA:54611] synonym: "medial nucleus" RELATED [Wikipedia:Medial_vestibular_nucleus] synonym: "nucleus of schwalbe" EXACT [FMA:54611] synonym: "nucleus triangularis" EXACT [FMA:54611, FMA:TA] synonym: "principal vestibular nucleus" EXACT [FMA:54611] synonym: "schwalbe's nucleus" EXACT [FMA:54611] synonym: "triangular nucleus" EXACT [FMA:54611] xref: ABA:MV xref: BM:Me-VS-VSM xref: BTO:0004371 xref: FMA:54611 xref: MA:0001048 xref: SCTID:280174005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray700.png/200px-Gray700.png xref: ncithesaurus:Medial_Vestibular_Nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: "spatially_disjoint_from" UBERON:0001721 property_value: "spatially_disjoint_from" UBERON:0007227 property_value: "spatially_disjoint_from" UBERON:0007230 [Term] id: UBERON:0001723 name: tongue namespace: uberon alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446 def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue] comment: editor notes - in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence. Taxon notes: Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods. Development notes: The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010360 xref: BTO:0001385 xref: EFO:0000833 xref: EHDAA2:0002062 xref: EHDAA:9144 xref: EMAPA:17185 xref: EMAPA:18870 xref: EV:0100058 xref: FMA:54640 xref: GAID:816 xref: MA:0000347 xref: MAT:0000040 xref: MESH:A.14.549.885 xref: MIAA:0000040 xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ xref: SCTID:181226008 xref: VHOG:0000419 xref: XAO:0000446 xref: ZFA:0005333 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Tongue.agr.jpg/200px-Tongue.agr.jpg xref: ncithesaurus:Tongue is_a: UBERON:0000020 ! sense organ is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001033 ! gustatory system relationship: develops_from UBERON:0004362 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! mandibular arch [Term] id: UBERON:0001724 name: sphenoidal sinus namespace: uberon alt_id: UBERON:FMA_54683-MA_0001795 def: "One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [MESH:A.04.531.621.827, Wikipedia:Sphenoidal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sphenoid sinus" EXACT [] xref: FMA:54683 xref: GAID:359 xref: MA:0001795 xref: MESH:A.04.531.621.827 xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA xref: SCTID:181207000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray856.png/200px-Gray856.png xref: ncithesaurus:Sphenoid_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0001725 name: cranial synchondrosis namespace: uberon alt_id: UBERON:FMA_54816-MA_0001502 def: "the cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514] xref: FMA:54816 xref: MA:0001502 xref: SCTID:314228003 is_a: UBERON:0002215 ! synchondrosis is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0001726 name: papilla of tongue namespace: uberon alt_id: UBERON:FMA_54819-MA_0001593 synonym: "lingual papilla" EXACT [] synonym: "tongue papilla" EXACT [] xref: FMA:54819 xref: MA:0001593 xref: NIF_GrossAnatomy:birnlex_4102 xref: SCTID:368728006 xref: ncithesaurus:Papilla_of_the_Tongue is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001723 ! tongue relationship: part_of UBERON:0009471 ! dorsum of tongue [Term] id: UBERON:0001727 name: taste bud namespace: uberon alt_id: UBERON:FMA_54825-MA_0001591-XAO_0000445-ZFA_0001074 def: "Taste buds are small structures on the upper surface of the tongue, soft palate, upper esophagus and epiglottis that provide information about the taste of food being eaten. These structures are involved in detecting the five elements of taste perception: salty, sour, bitter, sweet, and umami (or savory). Via small openings in the tongue epithelium, called taste pores, parts of the food dissolved in saliva come into contact with the taste receptors. These are located on top of the taste receptor cells that constitute the taste buds. The taste receptor cells send information detected by clusters of various receptors and ion channels to the gustatory areas of the brain via the seventh, ninth and tenth cranial nerves. The human tongue has about 10,000 taste buds. [WP,unvetted]." [Wikipedia:Taste_bud] comment: Editor notes: todo - account for non-tongue taste buds. Development notes: arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN10:1607950324 (todo - request cell terms from CL) Taste buds form in greatest concentration on the dorsal surface of the tongue subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caliculus gustatorius" RELATED PLURAL [Wikipedia:Taste_bud] synonym: "taste buds" RELATED PLURAL [Wikipedia:Taste_bud] synonym: "taste-bud" RELATED [Wikipedia:Taste_bud] synonym: "tastebud" EXACT [Wikipedia:Taste_bud] synonym: "tastebuds" RELATED PLURAL [Wikipedia:Taste_bud] xref: AAO:0010573 xref: BTO:0000989 xref: FMA:54825 xref: GAID:815 xref: MA:0001591 xref: MESH:A.08.800.550.700.120.800 xref: NIF_GrossAnatomy:birnlex_4101 xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA xref: SCTID:362099006 xref: TAO:0001074 xref: VHOG:0000130 xref: XAO:0000445 xref: ZFA:0001074 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Gray1018.png/200px-Gray1018.png is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004906 ! ectodermal gut relationship: part_of UBERON:0001033 ! gustatory system relationship: part_of UBERON:0001726 ! papilla of tongue relationship: part_of UBERON:0002926 ! gustatory epithelium relationship: develops_from UBERON:0001731 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cavity of pharynx [Term] id: UBERON:0001728 name: nasopharynx namespace: uberon alt_id: UBERON:FMA_54878-MA_0000443 def: "uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate;[1] it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. In front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Nasopharynx] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Nasenrachenraum" RELATED [BTO:0000662] synonym: "nasal part of pharynx" EXACT [] synonym: "rhinopharynx" EXACT [] xref: BTO:0000662 xref: EHDAA2:0001239 xref: EHDAA:7086 xref: EMAPA:17670 xref: EMAPA:25092 xref: EV:0100066 xref: FMA:54878 xref: GAID:339 xref: MA:0000443 xref: MAT:0000447 xref: MESH:A.03.867.557 xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA xref: SCTID:181200003 xref: VHOG:0000375 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg xref: ncithesaurus:Nasopharynx is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001729 name: oropharynx namespace: uberon alt_id: UBERON:FMA_54879-MA_0000351 def: "The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]." [Wikipedia:Oropharynx] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "oral part of pharynx" EXACT [] xref: EFO:0001976 xref: EHDAA2:0004082 xref: EMAPA:25094 xref: EV:0100067 xref: FMA:54879 xref: GAID:340 xref: MA:0000351 xref: MAT:0000446 xref: MESH:A.03.867.603 xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA xref: SCTID:263376008 xref: VAO:0000034 xref: VHOG:0000457 xref: XAO:0004048 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg xref: ncithesaurus:Oropharynx is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0001730 name: extrinsic ligament of larynx namespace: uberon alt_id: UBERON:FMA_54921-MA_0001756 synonym: "laryngeal extrinsic ligament" EXACT [] xref: FMA:54921 xref: MA:0001756 xref: SCTID:279550004 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0001731 name: cavity of pharynx namespace: uberon alt_id: UBERON:FMA_54935-XAO_0000105 comment: Taxon notes: See notes for pharynx - as a grouping class this is probably too bad. We exclude WBbt:0005790 (pharyngeal lumen) because of the developmental relationship. Development notes: TOODO check synonym: "cavitas pharyngis" RELATED [BTO:0002097] synonym: "lumen of pharynx" EXACT [] synonym: "pharyngeal cavity" EXACT [] xref: AAO:0010435 xref: BTO:0002097 xref: EMAPA:18381 xref: EMAPA:18869 xref: FMA:54935 xref: SCTID:180543003 xref: XAO:0000105 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0006562 ! pharynx [Term] id: UBERON:0001732 name: pharyngeal tonsil namespace: uberon alt_id: UBERON:FMA_54970-MA_0000774 def: "Adenoids (or pharyngeal tonsils, or nasopharyngeal tonsils) are a mass of lymphoid tissue situated at the very back of the nose, in the roof of the nasopharynx, where the nose blends into the mouth. Normally, in children, they make a soft mound in the roof and posterior wall of the nasopharynx, just above and behind the uvula. [WP,unvetted]." [Wikipedia:Pharyngeal_tonsil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Rachenmandel" RELATED [BTO:0000777] synonym: "adenoid" EXACT [] synonym: "nasopharyngeal tonsil" EXACT [] synonym: "tonsil of luschka" EXACT [] xref: BTO:0000777 xref: EFO:0001401 xref: EV:0100054 xref: FMA:54970 xref: GAID:1288 xref: MA:0000774 xref: MESH:A.15.382.520.604.084 xref: SCTID:181199001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray994-adenoid.png/200px-Gray994-adenoid.png xref: ncithesaurus:Pharyngeal_Tonsil is_a: UBERON:0002372 ! tonsil relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0001733 name: soft palate namespace: uberon alt_id: UBERON:FMA_55021-MA_0002412-MIAA_0000039 def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "muscular palate" RELATED [Wikipedia:Soft_palate] synonym: "velum" RELATED [Wikipedia:Soft_palate] xref: EMAPA:18949 xref: FMA:55021 xref: GAID:1284 xref: MA:0002412 xref: MAT:0000039 xref: MESH:A.14.549.617.780 xref: MIAA:0000039 xref: SCTID:245784004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg xref: ncithesaurus:Soft_Palate is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001716 ! secondary palate relationship: part_of UBERON:0000166 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! oral opening [Term] id: UBERON:0001734 name: uvula namespace: uberon alt_id: UBERON:FMA_55022-MA_0001006 def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Palatine_uvula] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "palatine uvula" EXACT [] synonym: "uvula of palate" EXACT [] synonym: "uvula palatina" EXACT [FMA:55022, FMA:TA] xref: EFO:0001386 xref: FMA:55022 xref: GAID:1285 xref: MESH:A.14.549.617.780.729 xref: SCTID:362082005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg xref: ncithesaurus:Uvula is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0001735 name: tonsillar ring namespace: uberon alt_id: UBERON:FMA_55070-MA_0000752 def: "lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring] comment: see also FMA:79771 naso-pharyngeal lymphoid tissue subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Waldeyer's ring" EXACT [] synonym: "Waldeyer's tonsillar ring" EXACT [] synonym: "anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA] synonym: "oropharyngeal lymphoid tissue" EXACT [] synonym: "pharyngeal lymphatic ring" EXACT [] synonym: "pharyngeal lymphoid ring" EXACT [] xref: FMA:55070 xref: MA:0000752 xref: SCTID:56411004 xref: ncithesaurus:Waldeyers_Tonsillar_Ring is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0001736 name: submandibular gland namespace: uberon alt_id: UBERON:FMA_55093-MA_0001589 def: "The paired submandibular glands (submaxillary glands) are salivary glands located beneath the floor of the mouth. In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]." [Wikipedia:Submandibular_gland] comment: TODO check SSG vs SG subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "submandibular salivary gland" RELATED [] synonym: "submaxillary gland" RELATED [] xref: BTO:0001316 xref: EFO:0001387 xref: EMAPA:18812 xref: EV:0100061 xref: FMA:55093 xref: GAID:942 xref: MA:0001589 xref: MESH:A.10.336.779.812 xref: SCTID:181235001 xref: VHOG:0000364 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg xref: ncithesaurus:Submandibular_Gland is_a: UBERON:0001829 ! major salivary gland [Term] id: UBERON:0001737 name: larynx namespace: uberon alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081 def: "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000268 xref: BTO:0001208 xref: EFO:0000838 xref: EHDAA2:0004063 xref: EMAPA:18333 xref: EV:0100039 xref: FMA:55097 xref: GAID:108 xref: MA:0000414 xref: MAT:0000187 xref: MESH:A.04.329 xref: MIAA:0000187 xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA xref: SCTID:181212004 xref: VHOG:0001279 xref: XAO:0003081 xref: galen:Larynx xref: ncithesaurus:Larynx is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001738 name: thyroid cartilage namespace: uberon alt_id: UBERON:FMA_55099-MA_0001764 def: "The thyroid cartilage is the largest of the nine cartilages that make up the laryngeal skeleton, the cartilage structure in and around the trachea that contains the larynx. It is composed of two plate-like laminae that fuse on the anterior side of the cartilage to form a peak, called the laryngeal prominence. This prominence is often referred to as the 'pomus Adamus' or 'Adam's apple'. The laryngeal prominence is more prominent in adult male than female because of the difference in the size of the angle: 90B0 in male and 120B0 in female. The lip of the thyroid cartilage just superior to the laryngeal prominence is called the superior thyroid notch, while the notch inferior to the thyroid angle is called the inferior thyroid notch. Its posterior border is elongated both inferiorly and superiorly to form the superior horn of thyroid cartilage and inferior horn of thyroid cartilage. [WP,unvetted]." [Wikipedia:Thyroid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0003655 xref: EHDAA2:0002030 xref: EHDAA:9395 xref: EMAPA:18698 xref: FMA:55099 xref: GAID:112 xref: MA:0001764 xref: MESH:A.02.165.507.870 xref: SCTID:263483000 xref: VHOG:0001365 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8a/Larynx_external_en.svg/200px-Larynx_external_en.svg.png xref: ncithesaurus:Thyroid_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage [Term] id: UBERON:0001739 name: laryngeal cartilage namespace: uberon alt_id: UBERON:FMA_55108-MA_0001758 def: "the cartilaginous structures that support the larynx." [MP:0002256] synonym: "cartilage of larynx" EXACT [FMA:55108] synonym: "cartilagines laryngeales" EXACT PLURAL [] synonym: "larynx cartilage" EXACT [] xref: BTO:0003660 xref: EHDAA:8157 xref: EMAPA:18697 xref: FMA:55108 xref: GAID:107 xref: MA:0001758 xref: MESH:A.02.165.507 xref: SCTID:263482005 xref: ncithesaurus:Laryngeal_Cartilage is_a: UBERON:0002236 ! costal cartilage is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0003583 ! larynx connective tissue is_a: UBERON:0005174 ! back organ is_a: UBERON:0005175 ! chest organ is_a: UBERON:0007844 ! cartilaginous element is_a: UBERON:0003601 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! neck cartilage relationship: part_of UBERON:0010212 ! laryngeal apparatus [Term] id: UBERON:0001740 name: arytenoid cartilage namespace: uberon alt_id: UBERON:FMA_55109-MA_0001759 def: "The arytenoid cartilages are a pair of small three-sided pyramids which form part of the larynx, to which the vocal cords are attached. Each is pyramidal in form, and has three surfaces, a base, and an apex. [WP,unvetted]." [Wikipedia:Arytenoid_cartilage] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arytenoids" RELATED [Wikipedia:Arytenoid_cartilage] synonym: "cartilago arytaenoidea" RELATED [AAO:0000674] xref: AAO:0000674 xref: EMAPA:18695 xref: FMA:55109 xref: GAID:109 xref: MA:0001759 xref: MESH:A.02.165.507.083 xref: SCTID:264446005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray950.png/200px-Gray950.png xref: ncithesaurus:Arytenoid_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage [Term] id: UBERON:0001741 name: corniculate cartilage namespace: uberon alt_id: UBERON:FMA_55110-MA_0001885 def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilage] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Santorini's cartilage" EXACT [] synonym: "cartilage of Santorini" EXACT [] xref: FMA:55110 xref: MA:0001885 xref: SCTID:278989005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/56/Gray952.png/200px-Gray952.png xref: ncithesaurus:Corniculate_Cartilage is_a: UBERON:0001996 ! elastic cartilage is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0003583 ! larynx connective tissue relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001742 name: epiglottic cartilage namespace: uberon alt_id: UBERON:FMA_55112-MA_0001763 def: "the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:55112 xref: MA:0001763 xref: SCTID:278990001 xref: ncithesaurus:Epiglottic_Cartilage is_a: UBERON:0001996 ! elastic cartilage is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0003583 ! larynx connective tissue is_a: UBERON:0001739 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! laryngeal cartilage relationship: part_of UBERON:0000388 ! epiglottis relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001743 name: ligament of larynx namespace: uberon alt_id: UBERON:FMA_55131-MA_0001755 def: "A ligament that is part of a larynx [Obol]. " [OBOL:automatic] synonym: "laryngeal ligament" EXACT [] synonym: "larynx ligament" EXACT [] xref: FMA:55131 xref: MA:0001755 xref: SCTID:279508004 xref: ncithesaurus:Laryngeal_Ligament is_a: UBERON:0003583 ! larynx connective tissue is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0001744 name: lymphoid tissue namespace: uberon alt_id: UBERON:FMA_55220-MA_0002436 def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lymphatic tissue" EXACT [] synonym: "lymphocytic tissue" EXACT [] xref: BTO:0000753 xref: FMA:55220 xref: GAID:342 xref: MA:0002436 xref: MESH:A.10.549 xref: SCTID:181768009 xref: galen:LymphoidTissue xref: ncithesaurus:Lymphoid_Tissue is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002193 ! hemolymphoid system relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0001745 name: secondary nodular lymphoid tissue namespace: uberon alt_id: UBERON:FMA_55224-MA_0000744 def: "sites within lymph nodes in peripheral lymph tissues where intense mature B lymphocytes, otherwise known as Centrocytes rapidly proliferate, differentiate, mutate through somatic hypermutation and class switch during antibody responses. Germinal centers are an important part of the B-cell humoral immune response. They develop dynamically after the activation of B-cells by T-dependent antigen. Histologically, the GCs describe microscopically distinguishable parts in lymphoid tissues[WP]. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation[GO]." [GO:0002467, Wikipedia:Germinal_center] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "germinal center" EXACT [] synonym: "lymph node germinal center" RELATED [] synonym: "lymph node secondary follicle" EXACT [] synonym: "peripheral lymphoid tissue" EXACT [] synonym: "secondary lymphoid nodule" EXACT [] synonym: "secondary lymphoid tissue" EXACT [] xref: BTO:0003671 xref: EV:0100051 xref: FMA:55224 xref: GAID:946 xref: MA:0000744 xref: MESH:A.10.549.250 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Keimzentrum.jpg/200px-Keimzentrum.jpg xref: ncithesaurus:Germinal_Center is_a: UBERON:0000444 ! lymphoid follicle relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0001746 name: fibrous capsule of thyroid gland namespace: uberon alt_id: UBERON:FMA_55513-MA_0002675 comment: This class was created automatically from a combination of ontologies synonym: "thyroid capsule" EXACT [] synonym: "thyroid gland capsule" EXACT [] xref: FMA:55513 xref: MA:0002675 xref: SCTID:176859009 xref: ncithesaurus:Thyroid_Gland_Capsule is_a: UBERON:0003893 ! capsule is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001747 name: parenchyma of thyroid gland namespace: uberon alt_id: UBERON:FMA_55515-MA_0000730 def: "A parenchyma that is part of a thyroid follicle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "parenchyma of thyroid" EXACT [OBOL:automatic] synonym: "parenchyma of thyroid follicle" EXACT [OBOL:automatic] synonym: "parenchyma of thyroid gland follicle" EXACT [OBOL:automatic] synonym: "thyroid follicle parenchyma" EXACT [OBOL:automatic] synonym: "thyroid gland follicle parenchyma" EXACT [OBOL:automatic] synonym: "thyroid gland parenchyma" EXACT [] synonym: "thyroid parenchyma" EXACT [OBOL:automatic] xref: BTO:0004579 xref: FMA:55515 xref: MA:0000730 xref: SCTID:371402001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001748 name: capsule of parathyroid gland namespace: uberon alt_id: UBERON:FMA_55566-MA_0002676 comment: This class was created automatically from a combination of ontologies synonym: "parathyroid gland capsule" EXACT [] xref: FMA:55566 xref: MA:0002676 xref: ncithesaurus:Parathyroid_Gland_Capsule is_a: UBERON:0003893 ! capsule [Term] id: UBERON:0001749 name: parenchyma of parathyroid gland namespace: uberon alt_id: UBERON:FMA_55569-MA_0002677 def: "A parenchyma that is part of a parathyroid gland [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "parathyroid gland parenchyma" EXACT [] synonym: "parathyroid parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of parathyroid" EXACT [OBOL:automatic] xref: FMA:55569 xref: MA:0002677 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0001750 name: lacrimal apparatus namespace: uberon alt_id: UBERON:FMA_55605-MA_0000274 def: "The lacrimal apparatus is the physiologic system containing the orbital structures for tear production and drainage. It consists of: (a) the lacrimal gland, which secretes the tears, and its excretory ducts, which convey the fluid to the surface of the eye; (b) the lacrimal canaliculi, the lacrimal sac, and the nasolacrimal duct, by which the fluid is conveyed into the cavity of the nose. [WP,unvetted]." [Wikipedia:Lacrimal_apparatus] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal. AO notes: this is an eye appendage in ncit, along with eyelid and eyebrow. in MA, part of eye surface part_of eye subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nasolacrimal drainage system" RELATED [UBERON:cjm] xref: FMA:55605 xref: GAID:901 xref: MA:0000274 xref: MESH:A.09.371.463 xref: ncithesaurus:Lacrimal_Apparatus is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0001751 name: dentine namespace: uberon alt_id: UBERON:FMA_55628-MA_0002542-ZFA_0005143 def: "a tubular mineralized tissue[H&W]. In mammals - substance of tooth produced by odontoblasts; surrounds the pulp of the tooth and is subjacent to enamel and cement[FMA]. Mineralized collagen containing substance that forms the tooth structure[ZFA]. a calcified tissue of the body, and along with enamel, cementum, and pulp is one of the four major components of teeth[WP]." [Wikipedia:Dentin, ZFIN:curator] comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. H&W describe a continuum atubular - meta/orthodentine - mesi/semidentine - cement and without cementoblasts. TODO - odontoid tissue. Editors note: note the asserted dual is_a parentage, as dentine is both skeletal tissue and a substance subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dentin" EXACT [MA:0002542] synonym: "dentine of tooth" EXACT [] synonym: "predentin" NARROW [GO:0070468] xref: BTO:0003453 xref: FMA:55628 xref: GAID:1272 xref: MA:0002542 xref: MESH:A.14.254.900.280 xref: SCTID:362112004 xref: TAO:0005143 xref: VAO:0000069 xref: XAO:0004051 xref: ZFA:0005143 xref: ncithesaurus:Dentin is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001973 ! substance of tooth is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:0001763 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dental papilla [Term] id: UBERON:0001752 name: enamel namespace: uberon alt_id: UBERON:FMA_55629-MA_0002543-ZFA_0005142 def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel, ZFIN:curator] comment: Tooth enamel is also found in the dermal denticles of sharks UBERON:0000041. For the most part, research has shown that formation in animals is almost identical to formation in humans. The enamel organ, including the dental papilla, and ameloblasts function similarly.[53] The variations of enamel that are present are infrequent but sometimes important. Differences exist, certainly, in the morphology, number, and types of teeth among animals. H&W - highly mineralized, hard, prismatic, avascular outer layer of vertebrate teeth and some scales. Enamel is unique in being the only noncollagenous mineralized vertebrate skeletal tissue (Diekwisch, 2002). The enamel proteins amelogenin, enamelin, tuftelin, MMP-20, and EMSP-1 form a highly conserved family of matrix proteins (Satchell et al., 2002). Like dentine, enamel is both odontogenic and skeletogenic; enamel covers teeth and dermal skeletal tissues. Because of its very high mineral content, enamel is much more resistant to wear than dentine; some 96% of mammalian enamel is inorganic, and only 0.5% organic. // TODO - split enamel and enameloid subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "enamel of tooth" EXACT [] synonym: "enameloid" RELATED [] synonym: "tooth enamel" EXACT [] xref: BTO:0001844 xref: FMA:55629 xref: MA:0002543 xref: MESH:A.14.254.900.255 xref: SCTID:362113009 xref: TAO:0005142 xref: VAO:0000065 xref: XAO:0004198 xref: ZFA:0005142 xref: ncithesaurus:Enamel is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001973 ! substance of tooth is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:0001763 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dental papilla [Term] id: UBERON:0001753 name: cementum namespace: uberon alt_id: UBERON:FMA_55630-MA_0002541 def: "A bone-like mineralized tissue secreted by cementoblasts on the surface of root dentine or, in some animals, crown enamel[Diekwisch 2001]. Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum] comment: Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W] synonym: "cement" EXACT [] synonym: "cement of tooth" EXACT [] synonym: "cementum" EXACT [] synonym: "cementum of tooth" EXACT [] xref: BTO:0002525 xref: FMA:55630 xref: MA:0002541 xref: MESH:A.14.254.646.267 xref: SCTID:362114003 xref: VAO:0000062 xref: XAO:0004196 xref: ncithesaurus:Cementum is_a: UBERON:0001973 ! substance of tooth is_a: UBERON:0004755 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! skeletal tissue [Term] id: UBERON:0001754 name: dental pulp namespace: uberon alt_id: UBERON:FMA_55631-MA_0001599 def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dental pulp cell" RELATED [BTO:0000339] synonym: "pulp of tooth" EXACT [] synonym: "tooth pulp" EXACT [ZFA:0005141] xref: BTO:0000339 xref: FMA:55631 xref: GAID:1270 xref: MA:0001599 xref: MESH:A.14.254.900.260 xref: SCTID:362110007 xref: VHOG:0001469 xref: ZFA:0005141 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png xref: ncithesaurus:Dental_Pulp is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001755 name: stylohyal namespace: uberon alt_id: UBERON:FMA_56472-ZFA_0001511 def: "A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]." [ZFIN:curator, http://www.biology-online.org/dictionary/Stylohyal] comment: TODO - check subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "distal part of styloid process" EXACT [] synonym: "interhyal bone" RELATED [] synonym: "interhyal cartilage" EXACT [] xref: FMA:56472 xref: TAO:0001511 xref: ZFA:0001511 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0003933 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranial cartilage relationship: part_of UBERON:0003128 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranium [Term] id: UBERON:0001756 name: middle ear namespace: uberon alt_id: UBERON:FMA_56513-MA_0000253-MIAA_0000146-XAO_0000191 def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auris media" RELATED [BTO:0002099] xref: AAO:0011065 xref: BTO:0002099 xref: EHDAA2:0001181 xref: EHDAA:5693 xref: EMAPA:17000 xref: EV:0100357 xref: FMA:56513 xref: GAID:165 xref: MA:0000253 xref: MAT:0000146 xref: MESH:A.09.246.397 xref: MIAA:0000146 xref: NIF_GrossAnatomy:birnlex_1695 xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA xref: SCTID:181185000 xref: VHOG:0000312 xref: XAO:0000191 xref: ncithesaurus:Middle_Ear is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001757 name: pinna namespace: uberon alt_id: UBERON:FMA_56580-MA_0000259 def: "Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat." [Wikipedia:Pinna_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auricle" EXACT [] synonym: "auricle of ear" EXACT [] synonym: "auricle of external ear" EXACT [] synonym: "auricula" EXACT [Wikipedia:Auricula] synonym: "auricula (auris externa)" EXACT [] synonym: "pinna of ear" EXACT [] synonym: "pinnae" RELATED PLURAL [] xref: EHDAA2:0001467 xref: EMAPA:17589 xref: EV:0100355 xref: FMA:56580 xref: MA:0000259 xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA xref: SCTID:421159007 xref: VHOG:0000460 xref: galen:Auricle xref: ncithesaurus:Auricle is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001758 name: periodontium namespace: uberon alt_id: UBERON:FMA_56665-MA_0002467 def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium] comment: note FMA treats periodontium and periodontal ligament as the same synonym: "paradentium" RELATED [MESH:A.14.254.646] synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665] synonym: "periodontal membrane" RELATED [MA:0002467] synonym: "tooth supporting structure" RELATED [MESH:A.14.254.646] xref: BTO:0001021 xref: FMA:56665 xref: GAID:216 xref: MESH:A.14.254.646 xref: ncithesaurus:Periodontium is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003672 ! dentition [Term] id: UBERON:0001759 name: vagus nerve namespace: uberon alt_id: UBERON:FMA_5731-MA_0001106-XAO_0003097-ZFA_0000453 def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "CN-X" RELATED [] synonym: "Vagus nerve [X]" EXACT [] synonym: "cranial nerve X" RELATED [] synonym: "nervus vagus" RELATED [BTO:0003472] synonym: "nervus vagus [x]" EXACT [FMA:5731, FMA:TA] synonym: "pneuomgastric nerve" RELATED [BTO:0003472] synonym: "tenth cranial nerve" EXACT [] synonym: "vagal nerve" RELATED [] synonym: "vagus" EXACT [] synonym: "vagus X nerve" EXACT [MA:0001106] synonym: "vagus nerve tree" EXACT [] xref: AAO:0010475 xref: BTO:0003472 xref: EFO:0002549 xref: FMA:5731 xref: GAID:721 xref: MA:0001106 xref: MESH:A.08.800.050.050.925 xref: NIF_GrossAnatomy:birnlex_801 xref: OpenCyc:Mx4rviHk2ZwpEbGdrcN5Y29ycA xref: SCTID:362466001 xref: TAO:0000453 xref: VHOG:0000737 xref: XAO:0003097 xref: ZFA:0000453 xref: galen:VagusNerve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png xref: ncithesaurus:Vagus_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001760 name: frontal sinus namespace: uberon alt_id: UBERON:FMA_57417-MA_0001793 def: "Sinuses are mucosa-lined airspaces within the bones of the face and skull. The frontal sinuses, situated behind the superciliary arches, are absent at birth, but are generally fairly well developed between the seventh and eighth years, only reaching their full size after puberty. The frontal bone is membranous at birth and there is rarely more than a recess until the bone tissue starts to ossify about age two. Consequently this structure does not show on radiographs before that time. Frontal sinuses are rarely symmetrical and the septum between them frequently deviates to one or other side of the middle line. Sinus development begins in the womb, but only the maxillary and ethmoid sinuses are present at birth. Approximately 5% of people have absent frontal sinuses. Their average measurements are as follows: height 28 mm, breadth 24 mm, depth 20 mm, creating a space of 6-7 ml. Each opens into the anterior part of the corresponding middle meatus of the nose through the frontonasal duct which traverses the anterior part of the labyrinth of the ethmoid. These structures then open into the hiatus semilunaris in the middle meatus. The mucous membrane in this sinus is innervated by the supraorbital nerve, which carries the postganglionic parasympathetic nerve fibers for mucous secretion from the facial nerve and supplied by the supraorbital artery and anterior ethmoidal artery. Through its copious mucus production, the sinus is an essential part of the immune defense/air filtration carried out by the nose. Nasal and sinal mucosae are ciliated and move mucus to the choanae and finally to the stomach. The thick upper layers of nasal mucus trap bacteria and small particles in tissue abundantly provided with immune cells, antibodies, and antibacterial proteins. The layers beneath are thinner and provide a substrate in which the cilia are able to beat and move the upper layer with its debris through the ostia toward the choanae. [WP,unvetted]." [Wikipedia:Frontal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cavity of frontal bone" EXACT [FMA:57417] xref: FMA:57417 xref: GAID:357 xref: MA:0001793 xref: MESH:A.04.531.621.387 xref: OpenCyc:Mx4rvqMUR5wpEbGdrcN5Y29ycA xref: SCTID:181205008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png xref: ncithesaurus:Frontal_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0001761 name: foramen caecum of thyroid namespace: uberon alt_id: UBERON:FMA_57443-MA_0000725 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "foramen caecum" BROAD [MA:0000725] xref: EHDAA2:0000550 xref: EHDAA:2150 xref: EHDAA:2977 xref: EMAPA:17069 xref: EMAPA:18828 xref: MA:0000725 xref: VHOG:0000826 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001762 name: nasal concha namespace: uberon alt_id: UBERON:FMA_57456-MA_0000286 def: "In anatomy, a nasal concha (or turbinate) is a long, narrow and curled bone shelf (shaped like an elongated sea-shell) which protrudes into the breathing passage of the nose. Turbinate bone refers to any of the scrolled spongy bones of the nasal passages in vertebrates. In humans, the turbinates divide the nasal airway into three groove-like air passages band are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue. [WP,unvetted]." [Wikipedia:Nasal_concha] comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "concha" RELATED [EMAPA:25093] synonym: "nasal turbinate" EXACT [] synonym: "turbinate" EXACT [] synonym: "turbinate bone" EXACT [EMAPA:25093] xref: EHDAA2:0004101 xref: EMAPA:25093 xref: GAID:224 xref: MA:0000286 xref: MESH:A.02.835.232.781.324.948 xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA xref: SCTID:361931007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray153.png/200px-Gray153.png xref: ncithesaurus:Nasal_Turbinate is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001707 ! nasal cavity disjoint_from: UBERON:0006203 ! conchal part of pinna [Term] id: UBERON:0001763 name: dental papilla namespace: uberon alt_id: UBERON:FMA_57662-MA_0001598-ZFA_0005140 def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina[ZFA]. The dental papilla is a condensation of ectomesenchymal cells called odontoblasts, seen in histologic sections of a developing tooth. It lies below a cellular aggregation known as the enamel organ. The dental papilla appears after 8-10 weeks intra uteral life. The dental papilla gives rise to the dentin and pulp of a tooth. The enamel organ, dental papilla, and dental follicle together forms one unit, called the tooth germ. This is of importance because all the tissues of a tooth and its supporting structures form from these distinct cellular aggregations." [Wikipedia:Dental_papilla, ZFA:0005140] comment: todo - add child terms for EMAPA. todo - check if the FMA and MA structures refer to developed structures. todo - check part_of - should perhaps be adjacent_to? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dentinal papilla" RELATED [BTO:0001839] synonym: "papilla dentis" RELATED [BTO:0001839] synonym: "pharyngeal tooth mesenchyme" RELATED [ZFA:0005140] synonym: "tooth mesenchyme" RELATED [ZFA:0005140] xref: BTO:0001839 xref: FMA:57662 xref: GAID:1277 xref: MA:0001598 xref: MESH:A.14.254.900.720.250 xref: TAO:0005140 xref: VAO:0000025 xref: VHOG:0001465 xref: XAO:0004045 xref: ZFA:0005140 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray1011.png/200px-Gray1011.png is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005087 ! tooth placode relationship: part_of UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001828 ! gingiva relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0001764 name: maxillary sinus namespace: uberon alt_id: UBERON:FMA_57715-MA_0001794 def: "The maxillary sinus (or Antrum of Highmore) is the largest of the paranasal sinuses, and is pyramidal in shape. [WP,unvetted]." [Wikipedia:Maxillary_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "antrum of highmore" EXACT [] xref: FMA:57715 xref: GAID:358 xref: MA:0001794 xref: MESH:A.04.531.621.578 xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA xref: SCTID:181204007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray1199.png/200px-Gray1199.png xref: ncithesaurus:Maxillary_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0001765 name: mammary duct namespace: uberon alt_id: UBERON:FMA_58006-MA_0000791 def: "Epithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct] comment: This structure regresses in most males subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ductus lactiferi" RELATED [BTO:0002845] synonym: "galactophorous tubule" RELATED [BTO:0002845] synonym: "lactiferous duct" EXACT [FMA:58006] synonym: "lactiferous gland duct" EXACT [Obol:automatic] synonym: "lactiferous tubule" RELATED [BTO:0002845] synonym: "mammary gland duct" EXACT [] xref: BTO:0002845 xref: FMA:58006 xref: MA:0000791 xref: SCTID:361719004 xref: ncithesaurus:Lactiferous_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0003244 ! epithelium of mammary gland is_a: UBERON:0003914 ! epithelial tube [Term] id: UBERON:0001766 name: anterior chamber of eyeball namespace: uberon alt_id: UBERON:FMA_58078-MA_0000262 def: "the fluid-filled space inside the eye between the iris and the cornea's innermost surface, the endothelium.[1] Aqueous humor is the fluid that fills the anterior chamber. Hyphema and glaucoma are two main pathologies in this area. In hyphema, blood fills the anterior chamber. In glaucoma, blockage of the canal of Schlemm prevents the normal outflow of aqueous humor, resulting in accumulation of fluid, increased intraocular pressure, and eventually blindness." [Wikipedia:Anterior_chamber_of_eyeball] comment: This class was created automatically from a combination of ontologies synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709] synonym: "anterior chamber of eye" EXACT [] synonym: "camera anterior" EXACT [] synonym: "eye anterior chamber" EXACT [] xref: BTO:0002084 xref: EHDAA2:0000129 xref: EHDAA:9033 xref: EMAPA:18231 xref: FMA:58078 xref: GAID:889 xref: MA:0000262 xref: MESH:A.09.371.060.067 xref: SCTID:181160009 xref: VHOG:0001431 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Anterior_Chamber_of_the_Eye is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001767 name: posterior chamber of eyeball namespace: uberon alt_id: UBERON:FMA_58080-MA_0002460 def: "a narrow chink behind the peripheral part of the iris of the lens, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens." [Wikipedia:Posterior_chamber_of_eyeball] comment: The posterior chamber should not be confused with vitreous chamber. synonym: "camera posterior" EXACT [] synonym: "eye posterior chamber" EXACT [] synonym: "posterior chamber of eye" EXACT [] xref: BTO:0002086 xref: FMA:58080 xref: MA:0002460 xref: OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA xref: SCTID:362504004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png xref: ncithesaurus:Posterior_Chamber_of_the_Eye is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001768 name: vascular layer of eyeball namespace: uberon alt_id: UBERON:FMA_58103-MA_0002480 def: "pigmented middle of the three concentric layers that make up an eye[WP]. The pigmented vascular coat of the eyeball, consisting of the CHOROID; CILIARY BODY; and IRIS, which are continuous with each other. (Cline et al., Dictionary of Visual Science, 4th ed)[GAID]." [Wikipedia:Uvea] comment: TODO - check child terms, isa vs partof subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tunica vasculosa of eyeball" EXACT [] synonym: "uvea" EXACT [] synonym: "uveal tract" EXACT [] xref: FMA:58103 xref: GAID:912 xref: MA:0002480 xref: MESH:A.09.371.894 xref: SCTID:280648000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Gray869.png/200px-Gray869.png xref: ncithesaurus:Uvea is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001769 name: iris namespace: uberon alt_id: UBERON:FMA_58235-MA_0000273-XAO_0000185-ZFA_0001238 def: "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)] comment: MA and FMA differ regarding isa vs partof to vascular layer subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior uvea" RELATED [] xref: AAO:0010347 xref: BTO:0000653 xref: EMAPA:19154 xref: EV:0100345 xref: FMA:58235 xref: GAID:917 xref: MA:0000273 xref: MESH:A.09.371.894.513 xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA xref: SCTID:181164000 xref: TAO:0001238 xref: VHOG:0000101 xref: XAO:0000185 xref: ZFA:0001238 xref: ncithesaurus:Iris is_a: UBERON:0001768 ! vascular layer of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001770 name: lacrimal canaliculus namespace: uberon alt_id: UBERON:FMA_58245-MA_0001294 def: "The lacrimal canaliculi, also known as the lacrimal canals or lacrimal ducts, are the small channels in each eyelid that commence at minute orifices, termed puncta lacrimalia, on the summits of the papillae lacrimales, seen on the margins of the lids at the lateral extremity of the lacus lacrimalis. The superior duct, the smaller and shorter of the two, at first ascends, and then bends at an acute angle, and passes medialward and downward to the lacrimal sac. The inferior duct at first descends, and then runs almost horizontally to the lacrimal sac. At the angles they are dilated into ampullC&. Microscopically, they are lined by nonkeratinizing stratified squamous epithelium surrounded by fibrous tissue. Outside the latter is a layer of striped muscle, continuous with the lacrimal part of the Orbicularis oculi; at the base of each lacrimal papilla the muscular fibers are circularly arranged and form a kind of sphincter. [WP,unvetted]." [Wikipedia:Lacrimal_canaliculus] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:58245 xref: MA:0001294 xref: SCTID:263348000 xref: ncithesaurus:Lacrimal_Canaliculus is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0001771 name: pupil namespace: uberon alt_id: UBERON:FMA_58252-MA_0001292-XAO_0000283-ZFA_0001283 def: "sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye." [Wikipedia:Pupil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010351 xref: FMA:58252 xref: GAID:918 xref: MA:0001292 xref: MESH:A.09.371.894.513.780 xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA xref: SCTID:35146001 xref: TAO:0001283 xref: VHOG:0000116 xref: XAO:0000283 xref: ZFA:0001283 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Eye_iris.jpg/200px-Eye_iris.jpg xref: ncithesaurus:Pupil is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001772 name: corneal epithelium namespace: uberon alt_id: UBERON:FMA_58263-MA_0001243 def: "The corneal epithelium (epithelium corneC& anterior layer) is made up of epithelial tissue and covers the front of the cornea. It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei. [WP,unvetted]." [Wikipedia:Corneal_epithelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior corneal epithelium" EXACT [] synonym: "anterior endothelium of cornea" RELATED [BTO:0000287] synonym: "cornea epithelial tissue" EXACT [OBOL:automatic] synonym: "cornea epithelium" EXACT [OBOL:automatic] synonym: "endothelium anterius corneae" RELATED [BTO:0000287] synonym: "endothelium camerae anterioris bulbi" RELATED [BTO:0000287] synonym: "endothelium corneale" RELATED [BTO:0000287] synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic] synonym: "epithelium anterius (cornea)" EXACT [] synonym: "epithelium anterius corneae" EXACT [FMA:58263, FMA:TA] synonym: "epithelium of cornea" EXACT [] synonym: "epithelium posterius corneae" RELATED [BTO:0000287] synonym: "external epithelium of cornea" EXACT [] xref: BTO:0000287 xref: EFO:0001917 xref: EHDAA2:0000319 xref: EMAPA:17162 xref: FMA:58263 xref: GAID:895 xref: MA:0001243 xref: MESH:A.09.371.060.217.325 xref: SCTID:15775008 xref: ZFA:0001683 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png xref: ncithesaurus:Corneal_Epithelium is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001773 name: sclera namespace: uberon alt_id: UBERON:FMA_58269-MA_0000280-XAO_0000183 def: "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted]." [Wikipedia:Sclera] comment: Development notes: Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]. Taxon notes: Multi-tissue structure that composes the opaque fibrous outer layer of the eye[ZFA] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010354 xref: BTO:0001606 xref: EMAPA:19027 xref: EV:0100342 xref: FMA:58269 xref: GAID:911 xref: MA:0000280 xref: MESH:A.09.371.784 xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA xref: SCTID:181163006 xref: VHOG:0001274 xref: XAO:0000183 xref: ZFA:0005563 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Sclera is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010230 ! eyeball of camera-type eye [Term] id: UBERON:0001774 name: muscle of trunk namespace: uberon alt_id: UBERON:FMA_58274-MA_0000514 def: "Muscle organ which is a part of the trunk. Examples: external intercostal muscle, external oblique, levator ani." [] comment: TODO - check muscle organ vs musculature subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "body musculature" EXACT [ZFA:0000473] synonym: "muscle organ of torso" EXACT [OBOL:automatic] synonym: "muscle organ of trunk" EXACT [OBOL:automatic] synonym: "torso muscle organ" EXACT [OBOL:automatic] synonym: "trunk muscle" EXACT [] synonym: "trunk muscle organ" EXACT [OBOL:automatic] synonym: "trunk musculature" EXACT [] xref: AAO:0000611 xref: EFO:0003531 xref: FMA:58274 xref: MA:0000514 xref: XAO:0003230 xref: ZFA:0000473 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005177 ! trunk organ [Term] id: UBERON:0001775 name: ciliary body namespace: uberon alt_id: UBERON:FMA_58295-MA_0000264-XAO_0000186-ZFA_0001203 def: "circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes." [Wikipedia:Ciliary_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior uvea" RELATED [] synonym: "corpus ciliare" RELATED [Wikipedia:Ciliary_body] xref: AAO:0010341 xref: BTO:0000260 xref: EMAPA:19065 xref: EV:0100346 xref: FMA:58295 xref: GAID:916 xref: MA:0000264 xref: MESH:A.09.371.894.280 xref: SCTID:263340007 xref: TAO:0001203 xref: VHOG:0000102 xref: XAO:0000186 xref: ZFA:0001203 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Ciliary_Body is_a: UBERON:0001768 ! vascular layer of eyeball [Term] id: UBERON:0001776 name: choroid namespace: uberon alt_id: UBERON:FMA_58298-MA_0000263 def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. In humans its thickness is about 0.5 mm. The choroid provides oxygen and nourishment to the outer layers of the retina [1]. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [Wikipedia:Choroid] comment: check choroid vs choroid layer subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "chorioid" RELATED [BTO:0001829] synonym: "choroid coat" EXACT [Wikipedia:Choroid] synonym: "choroidea" EXACT [Wikipedia:Choroid] synonym: "optic choroid" EXACT [ZFA:0005229] synonym: "posterior uvea" EXACT [Wikipedia:Uvea#Regions] xref: BTO:0001829 xref: EMAPA:19077 xref: EMAPA:25087 xref: EV:0100347 xref: FMA:58298 xref: GAID:913 xref: MA:0000263 xref: MESH:A.09.371.894.223 xref: SCTID:181172003 xref: ZFA:0005229 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Choroid is_a: UBERON:0001768 ! vascular layer of eyeball relationship: part_of UBERON:0001768 ! vascular layer of eyeball relationship: part_of UBERON:0001802 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! posterior segment of eyeball [Term] id: UBERON:0001777 name: substantia propria of cornea namespace: uberon alt_id: UBERON:FMA_58306-MA_0001245 def: "The substantia propria (or stroma of cornea) is fibrous, tough, unyielding, and perfectly transparent. It is composed of about 200 flattened lamellC& (plates of collagen fibrils), superimposed one on another. They are each about 1.5-2.5 micrometres in thickness. These fibrils run at different angles between the limbi. Fibres of the layers frequently interweave, the anterior lamellC& interweaving more than posterior lamellC&. The fibres of each lamella are parallel with one another, but at right angles to those of adjacent lamellC&. The lamellC& are produced by keratocytes (corneal corpuscles), which occupy about 10% of the substantia propria. These lamellC& are made up of bundles of modified connective tissue, the fibres of which are directly continuous with those of the sclera. More collagen fibres run in a temporal-nasal direction than run in the superior-inferior direction. This is often ignored by corneal transplant surgeons, leading to poor corneal mechanical strength in corneal transplant patients. [WP,unvetted]." [Wikipedia:Corneal_stroma] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cornea stroma" EXACT [] synonym: "corneal stroma" EXACT [] synonym: "stroma of cornea" EXACT [] synonym: "substantia propria" RELATED [] xref: EFO:0002514 xref: EMAPA:17602 xref: FMA:58306 xref: GAID:893 xref: MA:0001245 xref: MESH:A.09.371.060.217.228 xref: SCTID:362511000 xref: ZFA:0001685 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png xref: ncithesaurus:Corneal_Stroma is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001778 name: ciliary epithelium namespace: uberon alt_id: UBERON:FMA_58464-MA_0001238 def: "An epithelium that is part of a ciliary body [Obol]." [OBOL:automatic] synonym: "ciliary body epithelium" EXACT [FMA:58464] synonym: "epithelium of ciliary body" EXACT [FMA:58464] xref: BTO:0001770 xref: FMA:58464 xref: MA:0001238 xref: SCTID:280870004 xref: ncithesaurus:Ciliary_Epithelium is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0001775 ! ciliary body [Term] id: UBERON:0001779 name: iris stroma namespace: uberon alt_id: UBERON:FMA_58526-MA_0002777 def: "the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [Wikipedia:Iris_stroma, http://www.drugs.com/dict/stroma-of-iris.html] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "iridial stroma" EXACT [] synonym: "stroma of iris" EXACT [] xref: FMA:58526 xref: MA:0002777 xref: SCTID:280882008 xref: ZFA:0005569 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001780 name: spinal nerve namespace: uberon alt_id: UBERON:FMA_5858-MA_0000233-XAO_0003101 def: "Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve." [Wikipedia:Spinal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "backbone nerve" EXACT [OBOL:automatic] synonym: "nerve of backbone" EXACT [OBOL:automatic] synonym: "nerve of spinal column" EXACT [OBOL:automatic] synonym: "nerve of spine" EXACT [OBOL:automatic] synonym: "nerve of vertebral column" EXACT [OBOL:automatic] synonym: "spinal column nerve" EXACT [OBOL:automatic] synonym: "spinal nerve tree" EXACT [] synonym: "spine nerve" EXACT [OBOL:automatic] synonym: "vertebral column nerve" EXACT [OBOL:automatic] xref: AAO:0011101 xref: BTO:0000870 xref: EHDAA2:0001898 xref: EHDAA:2895 xref: EMAPA:16989 xref: FMA:5858 xref: GAID:841 xref: MA:0000233 xref: MESH:A.08.800.800.720 xref: OpenCyc:Mx4rwK_iFJwpEbGdrcN5Y29ycA xref: SCTID:361099009 xref: VHOG:0000824 xref: XAO:0003101 xref: ncithesaurus:Spinal_Nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0001781 name: layer of retina namespace: uberon alt_id: UBERON:FMA_58617-MA_0001319-XAO_0000266 def: "any of the layers that make up the retina[MP]." [MP:0003727] comment: Note that MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "retina layer" EXACT [] synonym: "retina neuronal layer" EXACT [MP:0006069] synonym: "retinal layer" EXACT [] synonym: "retinal neuronal layer" EXACT [MP:0006069] xref: AAO:0010353 xref: FMA:58617 xref: MA:0001318 xref: MA:0001319 xref: SCTID:280657006 xref: XAO:0000266 xref: ncithesaurus:Retina_Layer is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000966 ! retina relationship: part_of UBERON:0004128 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! optic vesicle [Term] id: UBERON:0001782 name: pigmented layer of retina namespace: uberon alt_id: UBERON:FMA_58627-MA_0000279-ZFA_0000144 def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator] comment: editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "PRE" RELATED [] synonym: "RPE" RELATED [] synonym: "epithelium, retinal pigment" RELATED [BTO:0001177] synonym: "outer pigmented layer of retina" EXACT [] synonym: "pigment epithelium of retina" EXACT [] synonym: "pigmented epithelium" RELATED [] synonym: "pigmented retina" RELATED [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "retinal pigment epithelium" EXACT [MP:0005201, Wikipedia:Retinal_pigment_epithelium] synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144] synonym: "stratum pigmentosum (retina)" EXACT [] xref: AAO:0011096 xref: BTO:0001177 xref: EHDAA2:0001465 xref: EHDAA:4765 xref: EMAPA:17172 xref: FMA:58627 xref: MA:0000279 xref: SCTID:280662007 xref: TAO:0000144 xref: VHOG:0000536 xref: XAO:0003217 xref: ZFA:0000144 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: ncithesaurus:Retinal_Pigment_Epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0007625 ! pigment epithelium of eye [Term] id: UBERON:0001783 name: optic disc namespace: uberon alt_id: UBERON:FMA_58634-MA_0000278 def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EFO:0001974 xref: EHDAA2:0001307 xref: EHDAA:9077 xref: EMAPA:18238 xref: EMAPA:25088 xref: FMA:58634 xref: MA:0000278 xref: SCTID:362518006 xref: VHOG:0000551 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray879.png/200px-Gray879.png xref: ncithesaurus:Optic_Disc is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0001784 name: macula lutea namespace: uberon alt_id: UBERON:FMA_58637-MA_0001306-ZFA_0000386 is_obsolete: true consider: UBERON:0000053 ! macula lutea consider: UBERON:0000054 ! macula comment: Obsoleted as it accidentally grouped macula and macula lutea [Term] id: UBERON:0001785 name: cranial nerve namespace: uberon alt_id: UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641 def: "Neural tree organ which is continuous with the brain. Examples: Trochlear nerve, facial nerve[FMA]. // Any of the major paired nerves of the head region. // Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [Wikipedia:Cranial_nerve, XB:curator, ZFIN:curator] comment: Editors note: not classified as a nerve in FMA. Note the structure of EMAPA is rather odd here - EMAPA:17264 (nerve of CNS) has a single child, cranial. We make EMAPA:17264 a subclass of this structure, as this appears to be the intent subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cranial nerves" RELATED [] synonym: "cranial neural tree organ" EXACT [] xref: AAO:0000108 xref: BTO:0001104 xref: EHDAA2:0000323 xref: EMAPA:17263 xref: EMAPA:17264 xref: FMA:5865 xref: GAID:802 xref: MA:0000215 xref: MESH:A.08.800.800.120 xref: NIF_GrossAnatomy:birnlex_1623 xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA xref: SCTID:244447006 xref: TAO:0000641 xref: VHOG:0000279 xref: XAO:0003089 xref: ZFA:0000641 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Brain_human_normal_inferior_view_with_labels_en.svg/200px-Brain_human_normal_inferior_view_with_labels_en.svg.png xref: ncithesaurus:Cranial_Nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001786 name: fovea centralis namespace: uberon alt_id: UBERON:FMA_58658-MA_0001307 def: "a part of the eye, located in the center of the macula region of the retina. [1] [2] The fovea is responsible for sharp central vision (also called foveal vision). The fovea is surrounded by the parafovea belt, and the perifovea outer region:[2] the parafovea is the intermediate belt where the ganglion cell layer is composed of more than five rows of cells; as well as the highest density of cones; the perifovea is the outermost region where the ganglion cell layer contains two to four rows of cells, and is where visual acuity is below the optimum. The perifovea contains an even more diminished density of cones, having 12 per 100 micrometres versus 50 per 100 micrometres in the most central fovea. This, in turn, is surrounded by a larger peripheral area that delivers highly compressed information of low resolution. Approximately 50% of the nerve fibers in the optic nerve carry information from the fovea, while the other 50% carry information from the rest of the retina. The parafovea extends to a distance of 1B< mm from the central fovea, and the perifovea is found 2B> mm away from the fovea centralis[WP]." [Wikipedia:Fovea_centralis_in_macula] comment: As an anatomical term, there are several foveae around the body, including in the head of the femur.(WP) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "centre of macula" EXACT [NIF_GrossAnatomy:birnlex_2543] synonym: "fovea" EXACT [] synonym: "fovea centralis in macula" EXACT [Wikipedia:Fovea_centralis_in_macula] xref: EV:0100350 xref: FMA:58658 xref: GAID:910 xref: MA:0001307 xref: MESH:A.09.371.729.522.436 xref: NIF_GrossAnatomy:birnlex_2543 xref: SCTID:264479005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Fovea_Centralis is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea [Term] id: UBERON:0001787 name: photoreceptor layer of retina namespace: uberon alt_id: UBERON:FMA_58680-MA_0001308 def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143] comment: we follow MA and ZFA in subdividing this into inner and outer segments subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "layer of rods and cones" RELATED [] synonym: "retina photoreceptor layer" EXACT [] synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143] synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] xref: FMA:58680 xref: MA:0001308 xref: VHOG:0001165 xref: XAO:0003215 xref: ZFA:0000143 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: ncithesaurus:Layer_of_the_Rods_and_Cones is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001788 name: outer limiting layer of retina namespace: uberon alt_id: UBERON:FMA_58683-MA_0001309 def: "the row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [MP:0010236] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "external limiting lamina of retina" EXACT [] synonym: "external limiting membrane" EXACT [ZFA:0001331] synonym: "external limiting membrane of retina" EXACT [] synonym: "outer limiting membrane" EXACT [XAO:0003224] synonym: "outer limiting membrane of retina" EXACT [] synonym: "retina external limiting lamina" EXACT [] synonym: "retina outer limiting membrane" EXACT [MP:0010236] synonym: "stratum limitans externum (retina)" EXACT [] xref: FMA:58683 xref: MA:0001309 xref: SCTID:280676008 xref: XAO:0003224 xref: ZFA:0001331 xref: ncithesaurus:Outer_Limiting_Membrane is_a: UBERON:0007619 ! limiting membrane of retina is_a: UBERON:0000476 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! acellular anatomical structure [Term] id: UBERON:0001789 name: outer nuclear layer of retina namespace: uberon alt_id: UBERON:FMA_58684-MA_0001315 def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ONL" NARROW [] synonym: "outer nuclear layer" BROAD [] synonym: "retina outer nuclear layer" EXACT [] synonym: "retinal outer nuclear layer" EXACT [] synonym: "stratum nucleare externum (retina)" EXACT [] xref: EMAPA:19157 xref: FMA:58684 xref: MA:0001315 xref: SCTID:280678009 xref: VHOG:0001170 xref: XAO:0003219 xref: ZFA:0001464 xref: ncithesaurus:Outer_Nuclear_Layer_of_Retina is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001790 name: outer plexiform layer of retina namespace: uberon alt_id: UBERON:FMA_58685-MA_0001316 def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "OPL" NARROW [] synonym: "external plexiform layer" EXACT [BTO:0003174] synonym: "outer plexiform layer" EXACT [BTO:0003174] synonym: "retina outer plexiform layer" EXACT [] synonym: "retinal outer plexiform layer" EXACT [] synonym: "stratum plexiforme externum" EXACT [] xref: BTO:0003174 xref: FMA:58685 xref: MA:0001316 xref: NIF_GrossAnatomy:nlx_anat_20090403 xref: SCTID:280684007 xref: VHOG:0001171 xref: XAO:0003218 xref: ZFA:0001330 xref: ncithesaurus:Outer_Plexiform_Layer is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001791 name: inner nuclear layer of retina namespace: uberon alt_id: UBERON:FMA_58686-MA_0001311 def: "The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells." [BTO:0003176] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "INL" NARROW [] synonym: "inner nuclear layer" EXACT [] synonym: "intermediate cell layer" EXACT [ZFA:0000119] synonym: "retina inner nuclear layer" EXACT [] synonym: "retinal inner nuclear layer" EXACT [] synonym: "stratum nucleare internum" EXACT [] xref: BTO:0003176 xref: EMAPA:19155 xref: FMA:58686 xref: MA:0001311 xref: NIF_GrossAnatomy:nlx_anat_1005031 xref: SCTID:362520009 xref: VHOG:0001167 xref: XAO:0003221 xref: ZFA:0000119 xref: ncithesaurus:Inner_Nuclear_Layer is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001792 name: ganglionic layer of retina namespace: uberon alt_id: UBERON:FMA_58687-MA_0001310 def: "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain." [Wikipedia:Ganglion_cell_layer] comment: Check exact synonyms in ZFA / XAO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "GCL layer" EXACT [] synonym: "RGC layer" EXACT [] synonym: "ganglion cell layer" EXACT [FMA:58687, ZFA:0000024] synonym: "ganglionic cell layer of retina" EXACT [FMA:58687] synonym: "retina ganglion cell layer" EXACT [] synonym: "retina ganglion layer" EXACT [] synonym: "retinal ganglion cell layer" EXACT [] synonym: "retinal ganglion layer" EXACT [MP:0008510] synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687] xref: BTO:0003398 xref: FMA:58687 xref: MA:0001310 xref: NIF_GrossAnatomy:nlx_anat_1005030 xref: SCTID:280670002 xref: VHOG:0001166 xref: XAO:0003223 xref: ZFA:0000024 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: ncithesaurus:Ganglion_Cell_Layer is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001793 name: nerve fiber layer of retina namespace: uberon alt_id: UBERON:0005888 alt_id: UBERON:FMA_58688-MA_0001314 def: "Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve[ZFA]. The retinal nerve fiber layer (nerve fiber layer, stratum opticum, RNFL) is formed by the expansion of the fibers of the optic nerve; it is thickest near the porus opticus, gradually diminishing toward the ora serrata. As the nerve fibers pass through the lamina cribrosa sclerae they lose their medullary sheaths and are continued onward through the choroid and retina as simple axis-cylinders. When they reach the internal surface of the retina they radiate from their point of entrance over this surface grouped in bundles, and in many places arranged in plexuses. Most of the fibers are centripetal, and are the direct continuations of the axis-cylinder processes of the cells of the ganglionic layer, but a few of them are centrifugal and ramify in the inner plexiform and inner nuclear layers, where they end in enlarged extremities." [Wikipedia:Nerve_fiber_layer, ZFA:0001619] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "layer of nerve fibers of retina" EXACT [] synonym: "layer of nerve fibres of retina" EXACT [] synonym: "retina nerve fiber layer" EXACT [] synonym: "stratum neurofibrarum (retina)" EXACT [] synonym: "stratum neurofibrarum retinae" EXACT [FMA:58688, FMA:TA] synonym: "stratum opticum of retina" EXACT [] xref: EMAPA:18591 xref: FMA:58688 xref: MA:0001314 xref: SCTID:280671003 xref: VHOG:0001169 xref: XAO:0003220 xref: ZFA:0001619 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001794 name: inner limiting layer of retina namespace: uberon alt_id: UBERON:FMA_58689-MA_0001313 def: "the row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] comment: TODO - check frog/fish subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "inner limiting membrane" EXACT [XAO:0003222] synonym: "inner limiting membrane of retina" EXACT [] synonym: "internal limiting lamina of retina" EXACT [] synonym: "internal limiting membrane of retina" EXACT [] synonym: "retina inner limiting membrane" EXACT [MP:0010235] synonym: "retina internal limiting lamina" EXACT [] xref: FMA:58689 xref: MA:0001313 xref: SCTID:280677004 xref: XAO:0003222 xref: ZFA:0001029 xref: ncithesaurus:Inner_Limiting_Membrane is_a: UBERON:0007619 ! limiting membrane of retina is_a: UBERON:0000476 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! acellular anatomical structure [Term] id: UBERON:0001795 name: inner plexiform layer of retina namespace: uberon alt_id: UBERON:FMA_58704-MA_0001312 def: "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]." [Wikipedia:Inner_plexiform_layer] comment: BTO misspelling? subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "IPL" NARROW [] synonym: "inner plexiform layer" RELATED [BTO:0003175] synonym: "retina inner plexiform layer" EXACT [] synonym: "retinal inner plexiform layer" EXACT [] synonym: "stratum plexifome internum" RELATED [BTO:0003175] synonym: "stratum plexiforme internum" EXACT [FMA:58704] xref: BTO:0003175 xref: FMA:58704 xref: MA:0001312 xref: NIF_GrossAnatomy:nlx_anat_1005032 xref: SCTID:280682006 xref: VHOG:0001168 xref: XAO:0003225 xref: ZFA:0001329 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: ncithesaurus:Inner_Plexiform_Layer is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001796 name: aqueous humor of eyeball namespace: uberon alt_id: UBERON:FMA_58819-MA_0001236 def: "Body substance in liquid state contained in the anterior and posterior chambers of the eyeball[FMA]. The aqueous humour is a thick watery substance filling the space between the lens and the cornea[WP]." [FMA:58819, Wikipedia:Aqueous_humor] comment: Note that FMA says A+P chambers, and MA states A chamber subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "aqueous humor" EXACT [] synonym: "aqueous humour" EXACT [] synonym: "humor aquosus" EXACT [FMA:58819, FMA:TA] xref: EHDAA2:0000139 xref: EHDAA:10196 xref: EMAPA:18232 xref: ENVO:02000024 xref: FMA:58819 xref: GAID:890 xref: MA:0001236 xref: MESH:A.09.371.060.067.070 xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA xref: SCTID:280587006 xref: VHOG:0000548 xref: ZFA:0005564 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Aqueous_Humor is_a: UBERON:0006312 ! ocular refractive media relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0001797 name: vitreous humor namespace: uberon alt_id: UBERON:FMA_58822-MA_0001286 def: "Body substance of semisolid state which constitutes the vitreous body of the eye.[FMA]" [FMA:FMA, Wikipedia:Vitreous_humor] comment: Note that FMA distinguishes between a portion and the whole portion. We equate with whole portion here, but this is arbitrary subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "humor vitreous" EXACT [] synonym: "humor vitreus" EXACT [FMA:58822, FMA:TA] synonym: "humoral fluid" RELATED [BTO:0001451] synonym: "ocular fluid" RELATED [BTO:0001451] synonym: "portion of vitreous humor" BROAD [FMA:67388] synonym: "vitreous" EXACT [ZFA:0005561] synonym: "vitreous fluid" RELATED [BTO:0001451] synonym: "vitreous humour" RELATED [] synonym: "whole portion of vitreous humor" EXACT [FMA:58822] xref: BTO:0001451 xref: EMAPA:17837 xref: ENVO:02000032 xref: EV:0100344 xref: FMA:58822 xref: MA:0001286 xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA xref: VHOG:0000795 xref: ZFA:0005561 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Vitreous_Humor is_a: UBERON:0006312 ! ocular refractive media relationship: part_of UBERON:0001798 ! vitreous body relationship: part_of UBERON:0005606 ! hyaloid cavity [Term] id: UBERON:0001798 name: vitreous body namespace: uberon alt_id: UBERON:FMA_58827-MA_0002462 def: "Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies.[FMA]" [FMA:58827, FMA:FMA] comment: Note - in many AOs these are exact synonyms, but FMA has a part of link between portion of vitreous humor and this subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: ENVO:02000032 xref: FMA:58827 xref: GAID:919 xref: MA:0002462 xref: MESH:A.09.371.943 xref: SCTID:181170006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Vitreous_Body is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball [Term] id: UBERON:0001799 name: vitreous chamber of eyeball namespace: uberon alt_id: UBERON:FMA_58848-MA_0002461 def: "The posterior chamber is a narrow chink behind the peripheral part of the iris of the human eye, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [WP,unvetted]." [Wikipedia:Vitreous_chamber] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "camera postrema" EXACT [] synonym: "camera postrema bulbi oculi" EXACT [FMA:58848, FMA:TA] synonym: "camera vitrea" EXACT [] synonym: "camera vitrea bulbi" EXACT [] synonym: "postremal chamber" EXACT [] synonym: "postremal chamber of eyeball" EXACT [] synonym: "vitreous chamber" EXACT [] xref: BTO:0002087 xref: FMA:58848 xref: MA:0002461 xref: ncithesaurus:Vitreous_Chamber is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001802 ! posterior segment of eyeball [Term] id: UBERON:0001800 name: sensory ganglion namespace: uberon alt_id: UBERON:FMA_5885-MA_0002566 def: "the clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960] comment: This class was created automatically from a combination of ontologies synonym: "ganglion sensorium" EXACT [] xref: FMA:5885 xref: MA:0002566 xref: MESH:A.08.340.390 xref: ncithesaurus:Sensory_Ganglion is_a: UBERON:0000045 ! ganglion is_a: UBERON:0003338 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! ganglion of peripheral nervous system [Term] id: UBERON:0001801 name: anterior segment of eyeball namespace: uberon alt_id: UBERON:FMA_58865-MA_0002484 def: "The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior segment of eye" EXACT [] synonym: "anterior segment of the eye" EXACT [] synonym: "eye anterior segment" EXACT [] synonym: "segmentum anterius (bulbus oculi)" EXACT [] xref: FMA:58865 xref: MA:0002484 xref: MESH:A.09.371.060 xref: SCTID:280658001 xref: ZFA:0005566 xref: ncithesaurus:Anterior_Eye_Segment is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010230 ! eyeball of camera-type eye property_value: "spatially_disjoint_from" UBERON:0001802 [Term] id: UBERON:0001802 name: posterior segment of eyeball namespace: uberon alt_id: UBERON:FMA_58868-MA_0002485 def: "The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "eye posterior segment" EXACT [] synonym: "posterior segment of eye" EXACT [] synonym: "posterior segment of the eye" EXACT [] synonym: "segmentum posterius (bulbus oculi)" EXACT [] xref: FMA:58868 xref: MA:0002485 xref: SCTID:280659009 xref: ZFA:0005567 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: ncithesaurus:Posterior_Eye_Segment is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010230 ! eyeball of camera-type eye [Term] id: UBERON:0001803 name: epithelium of lens namespace: uberon alt_id: UBERON:FMA_58871-MA_0001301-ZFA_0001326 def: "The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions." [Wikipedia:Lens_(anatomy)#Lens_Epithelium] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic] synonym: "epithelial tissue of lens" EXACT [OBOL:automatic] synonym: "epithelium lentis" EXACT [FMA:58871, FMA:TA] synonym: "epithelium of eye lens" EXACT [OBOL:automatic] synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic] synonym: "eye lens epithelium" EXACT [OBOL:automatic] synonym: "lens epithelial tissue" EXACT [OBOL:automatic] synonym: "lens epithelium" EXACT [] xref: BTO:0001873 xref: FMA:58871 xref: MA:0001301 xref: SCTID:362523006 xref: TAO:0001326 xref: XAO:0004094 xref: ZFA:0001326 is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0001804 name: capsule of lens namespace: uberon alt_id: UBERON:FMA_58881-MA_0001300 def: "a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs)." [Wikipedia:Lens_(anatomy)#Lens_capsule, Wikipedia:Lens_capsule] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lens capsule" EXACT [] xref: EHDAA2:0000977 xref: EMAPA:18237 xref: FMA:58881 xref: MA:0001300 xref: SCTID:244500004 xref: VHOG:0000550 xref: ZFA:0005574 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png xref: ncithesaurus:Lens_Capsule is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0003893 ! capsule is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane [Term] id: UBERON:0001805 name: autonomic ganglion namespace: uberon alt_id: UBERON:FMA_5889-MA_0000220 def: "ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion of autonomic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of visceral nervous system" EXACT [OBOL:automatic] synonym: "visceral nervous system ganglion" EXACT [OBOL:automatic] xref: EMAPA:17157 xref: EMAPA:18221 xref: FMA:5889 xref: MA:0000220 xref: ncithesaurus:Autonomic_Ganglion is_a: UBERON:0000045 ! ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0001806 name: sympathetic ganglion namespace: uberon alt_id: UBERON:FMA_5890-MA_0000226 def: "Sympathetic ganglia are the ganglia of the sympathetic nervous system. They deliver information to the body about stress and impending danger, and are responsible for the familiar fight-or-flight response. They contain approximately 20000–30000 nerve cell bodies and are located close to and on either side of the spinal cord in long chains. [WP,unvetted]." [Wikipedia:Sympathetic_ganglion] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "ganglion sympatheticum" EXACT [] synonym: "ganglion sympathicum" RELATED [BTO:0001333] synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic] synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic] xref: AAO:0010773 xref: BTO:0001333 xref: EHDAA2:0001969 xref: EMAPA:17157 xref: FMA:5890 xref: MA:0000226 xref: SCTID:362485003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: ncithesaurus:Sympathetic_Ganglion is_a: UBERON:0001805 ! autonomic ganglion [Term] id: UBERON:0001807 name: paravertebral ganglion namespace: uberon alt_id: UBERON:FMA_5891-ZFA_0001556 def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ganglion of sympathetic trunk" EXACT [] synonym: "ganglion trunci sympathetici" EXACT [] synonym: "ganglion trunci sympathici" EXACT [FMA:5891, FMA:TA] synonym: "sympathetic chain ganglion" EXACT [] xref: FMA:5891 xref: TAO:0001556 xref: ZFA:0001556 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png is_a: UBERON:0001806 ! sympathetic ganglion is_a: UBERON:0007134 ! trunk ganglion relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0001808 name: parasympathetic ganglion namespace: uberon alt_id: UBERON:FMA_5894-MA_0002469 def: "Parasympathetic ganglia are the autonomic ganglia of the parasympathetic nervous system. Most are small terminal ganglia or intramural ganglia, so named because they lie near or within (respectively) the organs they innervate. The exceptions are the four paired parasympathetic ganglia of the head and neck. [WP,unvetted]." [Wikipedia:Parasympathetic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ganglion parasympathicum" RELATED [BTO:0001256] xref: BTO:0001256 xref: EHDAA2:0001400 xref: FMA:5894 xref: MA:0002469 xref: NIF_GrossAnatomy:nlx_anat_100303 xref: SCTID:279284004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: ncithesaurus:Parasympathetic_Ganglion is_a: UBERON:0001805 ! autonomic ganglion [Term] id: UBERON:0001809 name: enteric ganglion namespace: uberon alt_id: UBERON:FMA_5896-MA_0001144 comment: This class was created automatically from a combination of ontologies synonym: "intramural ganglion" EXACT [] xref: FMA:5896 xref: MA:0001144 xref: ncithesaurus:Enteric_Ganglion is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0001810 name: nerve plexus namespace: uberon alt_id: UBERON:FMA_5901-MA_0002407 def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, Wikipedia:Nerve_plexus] comment: in FMA this is a subtype of junction rather than tissue subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AEO:0000138 xref: BTO:0000205 xref: EHDAA2:0003138 xref: EHDAA:3780 xref: EMAPA:16987 xref: EMAPA:18224 xref: FMA:5901 xref: MA:0002407 xref: SCTID:122455009 xref: ncithesaurus:Nerve_Plexus is_a: UBERON:0003714 ! neural tissue relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001811 name: conjunctiva namespace: uberon alt_id: UBERON:FMA_59011-XAO_0000182 def: "The conjunctiva is a clear mucous membrane consisting of cells and underlying basement membrane that covers the sclera (white part of the eye) and lines the inside of the eyelids. It is made of epithelial tissue. [WP,unvetted]." [Wikipedia:Conjunctiva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "wall of conjunctival sac" EXACT [] xref: AAO:0010343 xref: BTO:0003415 xref: EFO:0000374 xref: EV:0100340 xref: FMA:59011 xref: GAID:898 xref: HAO:0000221 xref: MA:0000265 xref: MESH:A.09.371.192 xref: SCTID:181161008 xref: XAO:0000182 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png xref: ncithesaurus:Conjunctiva is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001812 name: palpebral conjunctiva namespace: uberon alt_id: UBERON:FMA_59025-MA_0001265 comment: This class was created automatically from a combination of ontologies synonym: "tunica conjunctiva palpebrum" EXACT [] xref: FMA:59025 xref: MA:0001265 xref: SCTID:280666005 xref: ncithesaurus:Palpebral_Conjunctiva is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001813 name: somatic nerve plexus namespace: uberon alt_id: UBERON:FMA_5903-MA_0000235 def: "A nerve plexus that is part of a somatic nervous system [Obol]." [OBOL:automatic] comment: TODO - check synonym: "plexus nervorum spinalium" EXACT [FMA:5903, FMA:TA] synonym: "plexus of spinal nerves" EXACT [FMA:5903] synonym: "spinal nerve plexus" EXACT [FMA:5903] xref: EHDAA2:0001899 xref: EMAPA:16987 xref: FMA:5903 xref: MA:0000235 xref: SCTID:42280003 xref: VHOG:0000925 xref: ncithesaurus:Spinal_Nerve_Plexus is_a: UBERON:0001810 ! nerve plexus [Term] id: UBERON:0001814 name: brachial nerve plexus namespace: uberon alt_id: UBERON:FMA_5906-MA_0001180 def: "The brachial plexus is an arrangement of nerve fibers, running from the spine, formed by the ventral rami of the lower cervical and upper thoracic nerve root, specifically from below the fifth cervical vertebra to above the first thoracic vertebra. It proceeds through the neck, the axilla (armpit region) and into the arm. [WP,unvetted]." [Wikipedia:Brachial_plexus] comment: check superclass - nerve vs collection of fibers vs junction; note that FMA also has 'brachial autonomic nerve plexus' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brachial plexus" EXACT [] synonym: "plexus brachialis" RELATED [Wikipedia:Brachial_plexus] xref: EHDAA2:0000180 xref: EHDAA:3782 xref: EMAPA:16988 xref: FMA:5906 xref: GAID:842 xref: MA:0001180 xref: MESH:A.08.800.800.720.050 xref: OpenCyc:Mx4rwNWmO5wpEbGdrcN5Y29ycA xref: SCTID:181002002 xref: VHOG:0000372 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray808.png/200px-Gray808.png xref: ncithesaurus:Brachial_Plexus is_a: UBERON:0001813 ! somatic nerve plexus is_a: UBERON:0003441 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! forelimb nerve [Term] id: UBERON:0001815 name: lumbosacral nerve plexus namespace: uberon alt_id: UBERON:FMA_5907-MA_0001181 def: "The anterior divisions of the lumbar nerve, sacral nerve, and coccygeal nerves form the lumbosacral plexus, the first lumbar nerve being frequently joined by a branch from the twelfth thoracic. For descriptive purposes this plexus is usually divided into three parts: lumbar plexus sacral plexus pudendal plexus [WP,unvetted]." [Wikipedia:Lumbosacral_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lumbosacral plexus" EXACT [] synonym: "plexus lumbosacralis" EXACT [FMA:5907, FMA:TA] xref: EHDAA2:0001040 xref: EHDAA:4673 xref: EMAPA:17587 xref: FMA:5907 xref: GAID:849 xref: MA:0001181 xref: MESH:A.08.800.800.720.450 xref: OpenCyc:Mx4rvzYo75wpEbGdrcN5Y29ycA xref: SCTID:181049003 xref: VHOG:0000926 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray822.png/200px-Gray822.png xref: ncithesaurus:Lumbosacral_Plexus is_a: UBERON:0001813 ! somatic nerve plexus [Term] id: UBERON:0001816 name: autonomic nerve plexus namespace: uberon alt_id: UBERON:FMA_5910-MA_0000221 def: "A nerve plexus that is part of an autonomic nervous system [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autonomic plexus" EXACT [] synonym: "plexus autonomicus" EXACT [FMA:5910, FMA:TA] synonym: "plexus nervosus visceralis" EXACT [FMA:5910, FMA:TA] synonym: "plexus visceralis" EXACT [FMA:5910, FMA:TA] synonym: "visceral nerve plexus" EXACT [] synonym: "visceral plexus" EXACT [] xref: EMAPA:18224 xref: FMA:5910 xref: MA:0000221 xref: SCTID:362482000 is_a: UBERON:0001810 ! nerve plexus [Term] id: UBERON:0001817 name: lacrimal gland namespace: uberon alt_id: UBERON:FMA_59101-MA_0001296 def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands[FMA]. The lacrimal glands are paired almond-shaped glands, one for each eye, that secrete the aqueous layer of the tear film. They are situated in the upper, outer portion of each orbit. Inflammation of the lacrimal glands is called dacryoadenitis[WP]." [Wikipedia:Lacrimal_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000044 xref: EFO:0001389 xref: EV:0100339 xref: FMA:59101 xref: MA:0001296 xref: SCTID:181147003 xref: VHOG:0001476 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png xref: ncithesaurus:Lacrimal_Gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0004859 ! eye gland relationship: part_of UBERON:0001750 ! lacrimal apparatus relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001818 name: tarsal gland namespace: uberon alt_id: UBERON:FMA_59104-MA_0001249 def: "The meibomian glands (or tarsal glands) are a special kind of sebaceous glands at the rim of the eyelids, responsible for the supply of sebum, an oily substance that prevents evaporation of the eye's tear film, prevents tear spillage onto the cheek, and makes the closed lids airtight. There are approximately 50 glands on the upper eyelids and 25 glands on the lower eyelids. The glands are named after Heinrich Meibom (1638-1700), a German physician. [WP,unvetted]." [Wikipedia:Tarsal_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gland of meibom" EXACT [] synonym: "meibomian gland" EXACT [] synonym: "palpebral gland" RELATED [] xref: BTO:0004165 xref: FMA:59104 xref: GAID:899 xref: MA:0001249 xref: MESH:A.09.371.337.614 xref: SCTID:280585003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Gray1205.png/200px-Gray1205.png xref: ncithesaurus:Meibomian_Gland is_a: UBERON:0001821 ! sebaceous gland is_a: UBERON:0003487 ! skin sebaceous gland is_a: UBERON:0004859 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! eye gland relationship: part_of UBERON:0004772 ! eyelid tarsus [Term] id: UBERON:0001819 name: palpebral fissure namespace: uberon alt_id: UBERON:FMA_59110-MA_0001266 def: "Palpebral fissure is the anatomic name for the separation between the upper and lower eyelids. In the adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,unvetted]." [Wikipedia:Palpebral_fissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:59110 xref: MA:0001266 xref: SCTID:280576003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray892.png/200px-Gray892.png is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001820 name: sweat gland namespace: uberon alt_id: UBERON:FMA_59152-MA_0000150 def: "Sweat glands are exocrine glands, found in the skin of all mammal species, that are used for body temperature regulation. In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation. Sweat also serves a purpose of increasing friction on the palms of hands or the pads of paws. Both apocrine and merocrine sweat glands contain myoepithelial cells (from Greek myo-, 'muscle'), specialized epithelial cells located between the gland cells and the underlying basal lamina. Myoepithelial cell contractions squeeze the gland and discharge the accumulated secretions. The secretory activities of the gland cells and the contractions of myoepithelial cells are controlled by both the autonomic nervous system and by the circulating hormones. Additionally, ceruminous glands, which produce ear wax, and mammary glands, which produce milk, are frequently considered to be modified sweat glands. [WP,unvetted]." [Wikipedia:Sweat_gland] comment: todo - check if all sweat glands are epidermal - see EMAPA:29743 subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "glandula sudorifera" RELATED [BTO:0001331] synonym: "sudoriferous gland" RELATED [BTO:0001331] synonym: "sudoriparous gland" RELATED [BTO:0001331] xref: BTO:0001331 xref: EV:0100160 xref: FMA:59152 xref: GAID:943 xref: MA:0000150 xref: MESH:A.10.336.899 xref: OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA xref: SCTID:361700009 xref: VHOG:0001467 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png xref: ncithesaurus:Sweat_Gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0007771 ! epidermis gland relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0001821 name: sebaceous gland namespace: uberon alt_id: UBERON:FMA_59160-MA_0002565 def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebaceous_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "glandula sebaceae" RELATED [BTO:0001980] synonym: "sebaceous follicle" RELATED [BTO:0001980] xref: BTO:0001980 xref: EV:0100161 xref: FMA:59160 xref: GAID:900 xref: MA:0002565 xref: MESH:A.10.336.827 xref: SCTID:361697005 xref: VHOG:0001468 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png xref: ncithesaurus:Sebaceous_Gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001822 name: orbital septum namespace: uberon alt_id: UBERON:FMA_59328-MA_0001259 def: "a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:59328 xref: MA:0001259 xref: SCTID:368859002 is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0003037 ! septum is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: part_of UBERON:0004772 ! eyelid tarsus [Term] id: UBERON:0001823 name: nasal cartilage namespace: uberon alt_id: UBERON:FMA_59502-MA_0001883 def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cartilage of nose" EXACT [] xref: FMA:59502 xref: MA:0001883 xref: SCTID:278941001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray852.png/200px-Gray852.png xref: ncithesaurus:Nasal_Cartilage is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0001824 name: mucosa of larynx namespace: uberon alt_id: UBERON:FMA_59662-MA_0001766 def: "the mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261] comment: This class was created automatically from a combination of ontologies synonym: "laryngeal mucosa" EXACT [] synonym: "larynx mucosa" EXACT [] synonym: "larynx mucosa of organ" EXACT [OBOL:automatic] synonym: "larynx mucous membrane" EXACT [OBOL:automatic] synonym: "larynx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of larynx" EXACT [OBOL:automatic] synonym: "mucous membrane of larynx" EXACT [] synonym: "organ mucosa of larynx" EXACT [OBOL:automatic] synonym: "tunica mucosa laryngis" EXACT [FMA:59662, FMA:TA] xref: EMAPA:18334 xref: FMA:59662 xref: GAID:301 xref: MA:0001766 xref: MESH:A.04.329.597 xref: SCTID:361940006 xref: ncithesaurus:Laryngeal_Mucosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004785 ! respiratory system mucosa relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001825 name: paranasal sinus namespace: uberon alt_id: UBERON:FMA_59679-MA_0000431 def: "Paranasal sinuses are air-filled spaces, communicating with the nasal cavity, within the bones of the skull and face. [WP,unvetted]." [Wikipedia:Paranasal_sinus] comment: Arise as epithelial lined diverticula of the lining of the nasal cavity. The extent of sinus development varies with species, most of the development occurs postnatally subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nasal sinus" RELATED [GAID:355] synonym: "sinus" BROAD [] xref: EHDAA:6489 xref: EMAPA:18633 xref: EV:0100038 xref: FMA:59679 xref: GAID:355 xref: MA:0000431 xref: MESH:A.04.531.621 xref: SCTID:181203001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png xref: ncithesaurus:Paranasal_Sinus is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001826 name: nasal cavity mucosa namespace: uberon alt_id: UBERON:FMA_59684-MA_0001324 def: "the mucous membrane that lines the nasal cavity[MP]." [MP:0002238] comment: TODO - check lining vs part of. split olfactory and nasal mucosa? synonym: "mucosa of nose" EXACT [FMA:59684] synonym: "mucous membrane of nose" EXACT [FMA:59684] synonym: "nasal mucosa" RELATED [] synonym: "tunica mucosa nasalis" EXACT [] synonym: "tunica mucosa nasi" EXACT [FMA:59684, FMA:TA] xref: BTO:0000912 xref: FMA:59684 xref: GAID:302 xref: SCTID:310211009 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004785 ! respiratory system mucosa [Term] id: UBERON:0001827 name: tear namespace: uberon alt_id: UBERON:FMA_59756-MA_0002508 def: "Secretion produced by the lacrimal gland.[FMA]" [FMA:FMA, Wikipedia:Tear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001499 xref: ENVO:02000034 xref: FMA:59756 xref: GAID:1173 xref: MA:0002508 xref: MESH:A.12.200.882 xref: galen:Tear xref: galen:Tears xref: ncithesaurus:Tear is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0001828 name: gingiva namespace: uberon alt_id: UBERON:FMA_59762-MA_0000342 def: "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gum" EXACT [FMA:59762] synonym: "gum tissue" EXACT [UBERON:cjm] xref: BTO:0000519 xref: EFO:0001925 xref: EMAPA:18967 xref: EMAPA:18970 xref: EV:0100064 xref: FMA:59762 xref: GAID:1257 xref: MA:0000342 xref: MESH:A.14.254.646.480 xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA xref: SCTID:181224006 xref: VHOG:0001269 xref: galen:Gingiva xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png xref: ncithesaurus:Gingiva is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0001829 name: major salivary gland namespace: uberon alt_id: UBERON:FMA_59788-MA_0002478 def: "the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: FMA:59788 xref: MA:0002478 xref: SCTID:303049006 xref: galen:MajorSalivaryGland xref: ncithesaurus:Major_Salivary_Gland is_a: UBERON:0001044 ! salivary gland relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001830 name: minor salivary gland namespace: uberon alt_id: UBERON:FMA_59789-MA_0002479 def: "the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for Von Ebner's glands) and have many functions such as coating the oral cavity with saliva. Problems with dentures are usually associated with minor salivary glands[WP]." [MP:0003791, Wikipedia:Salivary_gland#Minor_Salivary_Glands] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: FMA:59789 xref: GAID:940 xref: MA:0002479 xref: MESH:A.10.336.779.650 xref: SCTID:362177001 xref: galen:MinorSalivaryGland xref: ncithesaurus:Minor_Salivary_Gland is_a: UBERON:0001044 ! salivary gland relationship: part_of UBERON:0002330 ! exocrine system relationship: part_of UBERON:0005334 ! oral lamina propria [Term] id: UBERON:0001831 name: parotid gland namespace: uberon alt_id: UBERON:FMA_59790-MA_0001585 def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [Wikipedia:Parotid_gland] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "parotid" EXACT [] xref: AAO:0010095 xref: BTO:0001004 xref: EFO:0002558 xref: EMAPA:18537 xref: EV:0100060 xref: FMA:59790 xref: GAID:938 xref: MA:0001585 xref: MESH:A.10.336.779.464 xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA xref: SCTID:181234002 xref: VHOG:0000308 xref: galen:ParotidGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg xref: ncithesaurus:Parotid_Gland is_a: UBERON:0001829 ! major salivary gland relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0001832 name: sublingual gland namespace: uberon alt_id: UBERON:FMA_59791-MA_0001588 def: "The sublingual glands are salivary glands in the mouth. They lie anterior to the submandibular gland under the tongue, beneath the mucous membrane of the floor of the mouth. They are drained by 8-20 excretory ducts called the ducts of Rivinus. The largest duct, the sublingual duct (of Bartholin) joins the submandibular duct to drain through the sublingual caruncle. The sublingual gland consists mostly of Mucous acini capped with serous demilunes and is therefore categorized as a mixed gland. Most of the remaining small sublingual ducts open separately into the mouth on an elevated crest of mucous membrane, the sublingual fold, caused by the gland and on either side of the frenulum linguae. The chorda tympani nerve is secretomotor to the sublingual glands. [WP,unvetted]." [Wikipedia:Sublingual_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Rivinus gland" RELATED [BTO:0001315] synonym: "Rivinus' gland" EXACT [] synonym: "ductus sublingualis" EXACT [] synonym: "sublingual salivary gland" RELATED [] synonym: "submaxillary gland" RELATED [MA:0001589] xref: BTO:0001315 xref: EMAPA:18809 xref: EV:0100062 xref: FMA:59791 xref: GAID:941 xref: MA:0001588 xref: MESH:A.10.336.779.687 xref: SCTID:362176005 xref: VHOG:0000363 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png xref: ncithesaurus:Sublingual_Salivary_Gland is_a: UBERON:0001829 ! major salivary gland disjoint_from: UBERON:0009964 ! crustacean maxillary gland [Term] id: UBERON:0001833 name: lip namespace: uberon alt_id: UBERON:FMA_59816-ZFA_0007006 def: "One of the two fleshy folds which surround the opening of the mouth. http://www.medterms.com/script/main/art.asp?articlekey=9458" [Wikipedia:Lip, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lips" RELATED [] xref: BTO:0001647 xref: FMA:59816 xref: GAID:76 xref: MA:0000343 xref: MESH:A.01.456.505.631.515 xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA xref: SCTID:181221003 xref: TAO:0007006 xref: VHOG:0000677 xref: ZFA:0007006 xref: galen:Lip xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg xref: ncithesaurus:Lip is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0001834 name: upper lip namespace: uberon alt_id: UBERON:0003391 alt_id: UBERON:FMA_59817-MA_0000919 def: "The upper lip covers the anterior surface of the body of the maxilla. Its upper half is of usual skin color and has a depression at its centre, directly under the nasal septum, called the philtrum, while its lower half is a markedly different, red-colored skin tone more similar to the colour of the inside of the mouth, and the term vermillion refers to the colored portion of either the upper or lower lip. It is raised by the Levator labii superioris and is connected to the lower lip by the thin lining of the lip itself, which can be seen by opening your mouth wide in front of a mirror. Thinning of the vermilion of the upper lip and flattening of the philtrum are two of the facial characteristics of Fetal alcohol syndrome, a life-long disability caused by the consumption of alcohol during pregnancy. [WP,unvetted]." [Wikipedia:Upper_lip] comment: Editor notes: add spatial relationships after jaw terms fixed subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "upper jaw lip" EXACT [UBERON:cjm] xref: EMAPA:17925 xref: FMA:59817 xref: MA:0000919 xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA xref: SCTID:245776003 xref: ZFA:0005226 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg is_a: UBERON:0001833 ! lip [Term] id: UBERON:0001835 name: lower lip namespace: uberon alt_id: UBERON:0003392 alt_id: UBERON:FMA_59818-MA_0000921 def: "The lower lip (also called underlip) covers the anterior body of the mandible. It is lowered by the Depressor labii inferioris muscle. [WP,unvetted]." [Wikipedia:Lower_lip] comment: Editor notes: add spatial relationships after jaw terms fixed subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lower jaw lip" EXACT [UBERON:cjm] xref: EHDAA2:0001020 xref: EMAPA:17909 xref: FMA:59818 xref: MA:0000921 xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA xref: SCTID:245777007 xref: ZFA:0005225 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg is_a: UBERON:0001833 ! lip [Term] id: UBERON:0001836 name: saliva namespace: uberon alt_id: UBERON:FMA_59862-MA_0002507 def: "In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]." [GO:0046541, Wikipedia:Saliva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "salivary gland secretion" EXACT [FMA:59862] xref: BTO:0001202 xref: ENVO:02000036 xref: FMA:59862 xref: GAID:1167 xref: MA:0002507 xref: MAT:0000444 xref: MESH:A.12.200.666 xref: OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA xref: galen:Saliva xref: ncithesaurus:Saliva is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0001837 name: duct of salivary gland namespace: uberon alt_id: UBERON:FMA_59908-MA_0001586 def: "An intralobular duct found in salivary glands and involved in the production and transport of their secretions[BTO]." [BTO:0005115, Wikipedia:Salivary_duct] comment: check taxonomy coverage - define functionally? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "salivary duct" EXACT [] synonym: "salivary gland duct" EXACT [] synonym: "secretory duct" RELATED [BTO:0005115] xref: BTO:0005115 xref: FMA:59908 xref: GAID:939 xref: MA:0001586 xref: MESH:A.10.336.779.640 xref: SCTID:181238004 is_a: UBERON:0000058 ! duct is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0001838 name: sublingual duct namespace: uberon alt_id: UBERON:FMA_59983-MA_0002699 def: "The excretory ducts of the sublingual gland are from eight to twenty in number. Of the smaller sublingual ducts (ducts of Rivinus), some join the submandibular duct; others open separately into the mouth, on the elevated crest of mucous membrane (plica sublingualis), caused by the projection of the gland, on either side of the frenulum linguae. One or more join to form the major sublingual duct (larger sublingual duct, duct of Bartholin), which opens into the submandibular duct. [WP,unvetted]." [Wikipedia:Sublingual_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004558 xref: FMA:59983 xref: MA:0002699 xref: SCTID:281000009 is_a: UBERON:0001837 ! duct of salivary gland [Term] id: UBERON:0001839 name: bony labyrinth namespace: uberon alt_id: UBERON:FMA_60179-MA_0000238-XAO_0000193 def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth] comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "osseous labyrinth" EXACT [] synonym: "osseus labyrinth" RELATED [] xref: AAO:0011078 xref: BTO:0004685 xref: EV:0100362 xref: FMA:60179 xref: MA:0000238 xref: SCTID:279727008 xref: VHOG:0001219 xref: XAO:0000193 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray920.png/200px-Gray920.png xref: ncithesaurus:Osseous_Labyrinth is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0004681 ! vestibular system [Term] id: UBERON:0001840 name: semicircular canal namespace: uberon alt_id: UBERON:FMA_60186-MA_0000249-XAO_0000198-ZFA_0000431 def: "One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Semicircular_canal, ZFIN:curator] comment: Note that MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA] xref: AAO:0011098 xref: BTO:0003383 xref: EV:0100365 xref: FMA:60186 xref: GAID:776 xref: MA:0000249 xref: MESH:A.09.246.631.663 xref: SCTID:279757004 xref: TAO:0000431 xref: VHOG:0001144 xref: XAO:0000198 xref: ZFA:0000431 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png xref: ncithesaurus:Semicircular_Canal is_a: UBERON:0000025 ! tube is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0001849 ! membranous labyrinth relationship: part_of UBERON:0001839 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! bony labyrinth [Term] id: UBERON:0001841 name: anterior semicircular canal namespace: uberon alt_id: UBERON:FMA_60187-MA_0001207-ZFA_0000314 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Anterior_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior semicircular canals" RELATED [] synonym: "anterior semicircular duct" RELATED [] synonym: "rostral vertical semicircular canal" RELATED [] synonym: "superior semicircular canal" EXACT [] xref: EHDAA2:0001959 xref: EHDAA:7802 xref: EMAPA:17299 xref: FMA:60187 xref: MA:0001207 xref: SCTID:279764002 xref: TAO:0000314 xref: ZFA:0000314 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: ncithesaurus:Superior_Semicircular_Canal is_a: UBERON:0001840 ! semicircular canal is_a: UBERON:0007833 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! osseus semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001842 name: posterior semicircular canal namespace: uberon alt_id: UBERON:FMA_60190-MA_0001209-ZFA_0000262 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Posterior_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caudal vertical semicircular canal" RELATED [] synonym: "posterior semicircular canals" RELATED [] synonym: "posterior semicircular duct" RELATED [] xref: EHDAA2:0001489 xref: EHDAA:7796 xref: EMAPA:17296 xref: FMA:60190 xref: MA:0001209 xref: SCTID:279762003 xref: TAO:0000262 xref: ZFA:0000262 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: ncithesaurus:Posterior_Semicircular_Canal is_a: UBERON:0001840 ! semicircular canal is_a: UBERON:0007833 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! osseus semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001843 name: lateral semicircular canal namespace: uberon alt_id: UBERON:FMA_60193-MA_0001208-ZFA_0000220 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Lateral_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "horizontal semicircular canal" RELATED [] synonym: "lateral semicircular canals" RELATED [] synonym: "lateral semicircular duct" RELATED [] xref: EHDAA2:0000920 xref: EHDAA:7790 xref: EMAPA:17821 xref: FMA:60193 xref: MA:0001208 xref: SCTID:279761005 xref: TAO:0000220 xref: ZFA:0000220 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png is_a: UBERON:0001840 ! semicircular canal is_a: UBERON:0007833 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! osseus semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001844 name: cochlea namespace: uberon alt_id: UBERON:FMA_60201-MA_0000240-MIAA_0000144-XAO_0000197 def: "The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]." [Wikipedia:Cochlea] comment: The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: \"In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)\" subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cochlear organ" RELATED [BTO:0000267] synonym: "cochlear part of bony labyrinth" EXACT [] synonym: "lagena" EXACT SENSU [XAO:0000197] xref: AAO:0000253 xref: BTO:0000267 xref: EFO:0000357 xref: EMAPA:17597 xref: EV:0100363 xref: FMA:60201 xref: GAID:724 xref: MA:0000240 xref: MAT:0000144 xref: MESH:A.09.246.631.246 xref: MIAA:0000144 xref: NIF_GrossAnatomy:birnlex_1190 xref: NIF_GrossAnatomy:birnlex_883 xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA xref: SCTID:181187008 xref: TAO:0000374 xref: VHOG:0000691 xref: XAO:0000197 xref: ZFA:0000374 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png xref: ncithesaurus:Cochlea is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001839 ! bony labyrinth relationship: part_of UBERON:0002518 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! otolith organ [Term] id: UBERON:0001845 name: perilymph namespace: uberon alt_id: UBERON:FMA_60908-MA_0002529 def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]" [FMA:FMA, Wikipedia:Perilymph] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: FMA:60908 xref: GAID:1185 xref: MA:0002529 xref: MESH:A.12.207.571.678 xref: ZFA:0005413 xref: ncithesaurus:Perilymph is_a: UBERON:0006586 ! otolymph relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001846 name: internal ear namespace: uberon alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217 def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "auris interna" RELATED [BTO:0000630] synonym: "inner ear" EXACT [] synonym: "labyrinth" RELATED [] synonym: "otocyst" RELATED [] xref: AAO:0000238 xref: BTO:0000630 xref: EFO:0001363 xref: EHDAA2:0000831 xref: EHDAA:504 xref: EMAPA:16194 xref: EV:0100361 xref: FMA:60909 xref: GAID:871 xref: MA:0000237 xref: MAT:0000145 xref: MESH:A.09.246.631 xref: MIAA:0000145 xref: NIF_GrossAnatomy:birnlex_1196 xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA xref: SCTID:181189006 xref: TAO:0000217 xref: VHOG:0000284 xref: XAO:0000192 xref: ZFA:0000217 xref: galen:InnerEar xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png xref: ncithesaurus:Internal_Ear is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001847 name: lobule of pinna namespace: uberon alt_id: UBERON:FMA_60984-MA_0002468 def: "The earlobe is, in humans and many other animals, the soft lower part of the external ear. It is the lowermost portion of the human pinna, projecting below the antitragus. The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function. [WP,unvetted]." [Wikipedia:Ear_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auricular lobule" EXACT [] synonym: "ear lobe" EXACT [] synonym: "ear lobule" RELATED [] synonym: "earlobe" EXACT [] synonym: "lobe of ear" EXACT [] synonym: "lobule of auricle" RELATED [] synonym: "lobule of auricle of ear" EXACT [] synonym: "lobulus auriculae" EXACT [FMA:60984, FMA:TA] synonym: "pinna lobule" EXACT [] xref: FMA:60984 xref: MA:0002468 xref: ncithesaurus:Lobule_of_the_Auricle is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001848 name: auricular cartilage namespace: uberon alt_id: UBERON:FMA_61013-MA_0001227 synonym: "cartilage of pinna" EXACT [FMA:61013] xref: FMA:61013 xref: MA:0001227 xref: SCTID:279627003 is_a: UBERON:0001867 ! cartilage of external ear relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001849 name: membranous labyrinth namespace: uberon alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194 def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth] comment: inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0011060 xref: EHDAA:4698 xref: EMAPA:17815 xref: EV:0100367 xref: FMA:61022 xref: MA:0000242 xref: SCTID:263790009 xref: VHOG:0000729 xref: XAO:0000194 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png xref: ncithesaurus:Membranous_Labyrinth is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0001850 name: lacrimal duct namespace: uberon alt_id: UBERON:FMA_61063-MA_0001295 def: "Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts.[FMA]" [FMA:61063, Wikipedia:Lacrimal_duct] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lacrimal caniculi" RELATED [Wikipedia:Lacrimal] synonym: "tear duct" RELATED [MA:0001295] xref: EMAPA:19245 xref: FMA:61063 xref: MA:0001295 is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001750 ! lacrimal apparatus [Term] id: UBERON:0001851 name: cortex namespace: uberon alt_id: UBERON:FMA_61109-XAO_0000216 def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)] comment: This class is used in a very general sense subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010327 xref: EFO:0000383 xref: EHDAA:9344 xref: EMAPA:18427 xref: FMA:61109 xref: galen:Cortex is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0001852 name: endolymph namespace: uberon alt_id: UBERON:FMA_61112-MA_0002528 def: "Transudate contained within the membranous labyrinth.[FMA]" [FMA:FMA, Wikipedia:Endolymph] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: FMA:61112 xref: GAID:1184 xref: MA:0002528 xref: MESH:A.12.207.571.324 xref: ZFA:0005414 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png xref: ncithesaurus:Endolymph is_a: UBERON:0006586 ! otolymph [Term] id: UBERON:0001853 name: utricle of membranous labyrinth namespace: uberon alt_id: UBERON:FMA_61113-MA_0000247-XAO_0000195-ZFA_0000700 def: "one of the two otolith organs located in the vertebrate inner ear. These use small stones and a viscous fluid to stimulate hair cells to detect motion and orientation. The utricle is larger than the saccule and is of an oblong form, compressed transversely, and occupies the upper and back part of the vestibule, lying in contact with the recessus ellipticus and the part below it. The utricle contains mechanoreceptors called hair cells that distinguish between degrees of tilting of the head, thanks to their apical cilia set-up. These are covered by otolith which, due to gravity, pull on the cilia and tilt them. Depending on whether the tilt is in the direction of the kinocilium or not, the resulting hair cell polarisation is excitatory (depolarising) or inhibitory (hyperpolarisation), respectively. This signal to the vestibular nerve (which takes it to the brainstem) does not adapt with time. The effect of this is that, for example, an individual lying down to sleep will continue to detect that they are lying down hours later when they awaken[WP]." [Wikipedia:Utricle_(ear)] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "membranous labyrinth utricle" EXACT [] synonym: "utricle" EXACT [] synonym: "utriculus" EXACT [ZFA:0000700] synonym: "utriculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000625 xref: BTO:0001807 xref: EHDAA2:0002153 xref: EHDAA:4726 xref: EMAPA:17293 xref: EV:0100368 xref: FMA:61113 xref: MA:0000247 xref: SCTID:279817006 xref: TAO:0000700 xref: VHOG:0000289 xref: XAO:0000195 xref: ZFA:0000700 xref: ncithesaurus:Utricle is_a: UBERON:0002518 ! otolith organ [Term] id: UBERON:0001854 name: saccule of membranous labyrinth namespace: uberon alt_id: UBERON:FMA_61116-MA_0000246-ZFA_0000428 def: "A bed of sensory cells situated in the inner ear. The saccule translates head movements into neural impulses which the brain can interpret. The saccule is sensitive to linear translations of the head, specifically movements up and down (think about moving on an elevator). When the head moves vertically, the sensory cells of the saccule are disturbed and the neurons connected to them begin transmitting impulses to the brain. These impulses travel along the vestibular portion of the eighth cranial nerve to the vestibular nuclei in the brainstem. is the smaller of the two vestibular sacs. It is globular in form and lies in the recessus sphC&ricus near the opening of the scala vestibuli of the cochlea. Its cavity does not directly communicate with that of the utricle. The anterior part of the saccule exhibits an oval thickening, the macula acustica sacculi, or macula, to which are distributed the saccular filaments of the vestibular branch of the vestibulocochlear nerve, also known as the acoustic nerve or cranial nerve VIII[WP]." [Wikipedia:Saccule] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "membranous labyrinth saccule" EXACT [] synonym: "saccule" EXACT [] synonym: "sacculus" EXACT [ZFA:0000428] synonym: "sacculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000550 xref: BTO:0001805 xref: EHDAA2:0001769 xref: EHDAA:4712 xref: EMAPA:17290 xref: EV:0100369 xref: FMA:61116 xref: MA:0000246 xref: SCTID:279827000 xref: TAO:0000428 xref: VHOG:0000374 xref: XAO:0000196 xref: ZFA:0000428 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg xref: ncithesaurus:Saccule is_a: UBERON:0002518 ! otolith organ [Term] id: UBERON:0001855 name: cochlear duct of membranous labyrinth namespace: uberon alt_id: UBERON:FMA_61119-MA_0000243 def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct] comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Reissner's canal" EXACT [] synonym: "cochlea duct" EXACT [NIF_GrossAnatomy:birnlex_2562] synonym: "cochlear aqueduct" RELATED [] synonym: "cochlear duct" EXACT [] synonym: "ductus cochlearis" RELATED [BTO:0001692] synonym: "membranous cochlea" RELATED [BTO:0001692] synonym: "reissners canal" EXACT [NIF_GrossAnatomy:birnlex_2562] synonym: "scala media" RELATED [Wikipedia:Cochlear_duct] synonym: "scala medias" EXACT [NIF_GrossAnatomy:birnlex_2562] synonym: "scala of Loewenberg" RELATED [BTO:0001692] xref: BTO:0001692 xref: EHDAA2:0000262 xref: EHDAA:4718 xref: EMAPA:17598 xref: FMA:61119 xref: GAID:874 xref: MA:0000243 xref: MESH:A.09.246.631.246.292 xref: NIF_GrossAnatomy:birnlex_2562 xref: SCTID:279849006 xref: VHOG:0000507 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png xref: ncithesaurus:Cochlear_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 ! membranous labyrinth relationship: part_of UBERON:0002499 ! cochlear labyrinth [Term] id: UBERON:0001856 name: semicircular duct namespace: uberon alt_id: UBERON:FMA_61122-MA_0000251 def: "any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium" [http://dictionary.reference.com/browse/semicircular+duct] comment: TODO - check canal vs duct. see http://en.wikipedia.org/wiki/File:Gray927.png synonym: "ductus semicirculares" RELATED PLURAL [FMA:71880, FMA:TA] synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: FMA:61122 xref: MA:0000251 xref: SCTID:279833009 xref: VHOG:0000238 xref: ncithesaurus:Semicircular_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0001857 name: anterior semicircular duct namespace: uberon alt_id: UBERON:FMA_61123-MA_0001211 comment: This class was created automatically from a combination of ontologies xref: FMA:61123 xref: MA:0001211 xref: SCTID:279836001 xref: VHOG:0000246 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001841 ! anterior semicircular canal [Term] id: UBERON:0001858 name: posterior semicircular duct namespace: uberon alt_id: UBERON:FMA_61126-MA_0001214 def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously. [WP,unvetted]." [Wikipedia:Posterior_semicircular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:61126 xref: MA:0001214 xref: SCTID:279835002 xref: VHOG:0000248 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: UBERON:0001859 name: lateral semicircular duct namespace: uberon alt_id: UBERON:FMA_61129-MA_0001213 def: "The lateral or horizontal canal (external semicircular canal) is the shortest of the three canals. Movement of fluid within this canal corresponds to rotation of the head around a vertical axis (i.e. the neck). [WP,unvetted]." [Wikipedia:Lateral_semicircular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:61129 xref: MA:0001213 xref: SCTID:279834003 xref: VHOG:0000247 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001843 ! lateral semicircular canal [Term] id: UBERON:0001860 name: endolymphatic duct namespace: uberon alt_id: UBERON:FMA_61246-MA_0001187 def: "From the posterior wall of the saccule a canal, the endolymphatic duct, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. [WP,unvetted]." [Wikipedia:Endolymphatic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: EMAPA:18580 xref: FMA:61246 xref: GAID:886 xref: MA:0001187 xref: MESH:A.09.246.631.909.957.360 xref: SCTID:362567008 xref: ZFA:0001705 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png is_a: UBERON:0000058 ! duct is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001861 name: ductus reuniens namespace: uberon alt_id: UBERON:FMA_61252-MA_0000244 comment: This class was created automatically from a combination of ontologies xref: EMAPA:17287 xref: FMA:61252 xref: MA:0000244 xref: SCTID:279805009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001862 name: vestibular labyrinth namespace: uberon alt_id: UBERON:FMA_61255-MA_0000245 def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856] synonym: "labyrinthus vestibularis" RELATED [BTO:0001856] synonym: "vestibular apparatus" RELATED [] xref: BTO:0001856 xref: EHDAA2:0000832 xref: EMAPA:17286 xref: FMA:61255 xref: MA:0000245 xref: SCTID:181188003 xref: XAO:0004145 xref: ncithesaurus:Vestibular_Labyrinth is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001863 name: scala vestibuli namespace: uberon alt_id: UBERON:FMA_61269-MA_0001206 def: "Scala vestibuli is a perilymph filled cavity inside the cochlea of the inner ear. It is separated from the scala media by Reissner's membrane and extends from the oval window to the helicotrema where it joins scala tympani. [WP,unvetted]." [Wikipedia:Scala_vestibuli] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:61269 xref: MA:0001206 xref: SCTID:362578000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001864 name: scala tympani namespace: uberon alt_id: UBERON:FMA_61272-MA_0001205 def: "Scala tympani is one of the perilymph-filled cavities in the cochlear labyrinth. It is separated from the scala media by the basilar membrane, and it extends from the round window to the helicotrema, where it continues as scala vestibuli. The purpose of the perilymph-filled scala tympani and scala vestibuli is to transduce the movement of air that causes the tympanic membrane and the ossicles to vibrate, to movement of liquid and the basilar membrane. This movement is conveyed to the organ of Corti inside the scala media, composed of hair cells attached to the basilar membrane and their stereocilia embedded in the tectorial membrane. The movement of the basilar membrane compared to the tectorial membrane causes the sterocilia to bend. They then depolarise and send impulses to the brain via the cochlear nerve. This produces the sensation of sound. [WP,unvetted]." [Wikipedia:Scala_tympani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:61272 xref: GAID:879 xref: MA:0001205 xref: MESH:A.09.246.631.246.848 xref: SCTID:362579008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001865 name: cartilaginous external acoustic tube namespace: uberon alt_id: UBERON:FMA_61289-MA_0001234 comment: This class was created automatically from a combination of ontologies synonym: "cartilaginous external acoustic meatus" EXACT [] synonym: "cartilaginous part of external acoustic meatus" EXACT [] synonym: "external acoustic meatus cartilaginous part" EXACT [] synonym: "meatus acusticus externus cartilagineus" EXACT [FMA:61289, FMA:TA] xref: FMA:61289 xref: MA:0001234 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0001866 name: sebum namespace: uberon alt_id: UBERON:FMA_61304-MA_0002538 def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001981 xref: ENVO:02000037 xref: FMA:61304 xref: GAID:1168 xref: MA:0002538 xref: MESH:A.12.200.702 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png xref: ncithesaurus:Sebum is_a: UBERON:0000456 ! bodily secretion is_a: UBERON:0006535 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! skin fluid/secretion [Term] id: UBERON:0001867 name: cartilage of external ear namespace: uberon alt_id: UBERON:FMA_61339-MA_0001886 def: "A cartilage that is part of a external ear [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "auricular region cartilage" EXACT [OBOL:automatic] synonym: "auricular region of head cartilage" EXACT [OBOL:automatic] synonym: "cartilage of auricular region" EXACT [OBOL:automatic] synonym: "cartilage of auricular region of head" EXACT [OBOL:automatic] synonym: "cartilage of outer ear" EXACT [OBOL:automatic] synonym: "external ear cartilage" EXACT [] synonym: "outer ear cartilage" EXACT [OBOL:automatic] xref: FMA:61339 xref: GAID:103 xref: MA:0001886 xref: MESH:A.02.165.207 xref: ncithesaurus:External_Ear_Cartilage is_a: UBERON:0001996 ! elastic cartilage is_a: UBERON:0003566 ! head connective tissue relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001868 name: skin of chest namespace: uberon alt_id: UBERON:FMA_61415-MA_0000553 def: "A zone of skin that is part of a chest [Obol]." [OBOL:automatic] comment: check FMA:61415 synonym: "anterior thoracic region zone of skin" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax zone of skin" EXACT [OBOL:automatic] synonym: "chest skin" EXACT [] synonym: "chest zone of skin" EXACT [OBOL:automatic] synonym: "front of thorax zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of anterior chest" EXACT [FMA:61416] synonym: "zone of skin of anterior part of thorax" EXACT [FMA:61416] synonym: "zone of skin of anterior thoracic region" EXACT [OBOL:automatic] synonym: "zone of skin of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "zone of skin of chest" EXACT [OBOL:automatic] synonym: "zone of skin of front of thorax" EXACT [OBOL:automatic] xref: FMA:61416 xref: FMA:61417 xref: MA:0000553 xref: SCTID:181496004 is_a: UBERON:0001418 ! skin of thorax relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0001869 name: cerebral hemisphere namespace: uberon alt_id: UBERON:FMA_61817-MA_0000133 def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]" [FMA:FMA, Wikipedia:Cerebral_hemisphere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cerebrum" RELATED [] xref: AAO:0010480 xref: BTO:0000231 xref: EFO:0002521 xref: FMA:61817 xref: MA:0000133 xref: NIF_GrossAnatomy:birnlex_1042 xref: OpenCyc:Mx4rvigx5ZwpEbGdrcN5Y29ycA xref: SCTID:278251007 xref: VHOG:0001639 xref: galen:CerebralHemisphere xref: ncithesaurus:Cerebral_Hemisphere is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0001870 name: frontal cortex namespace: uberon alt_id: UBERON:FMA_61824-MA_0000905 def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [Wikipedia:Frontal_lobe] comment: Editor note: Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though [MM] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "frontal lobe" EXACT [FMA:61824] synonym: "frontal region" EXACT [] synonym: "regio frontalis" EXACT [FMA:61824, FMA:TA] xref: BM:Tel-Cx-FR xref: BTO:0000484 xref: EFO:0000913 xref: EV:0100167 xref: FMA:61824 xref: GAID:674 xref: MA:0000905 xref: MAT:0000505 xref: MESH:A.08.186.211.730.885.213.270 xref: NIF_GrossAnatomy:birnlex_928 xref: NIF_GrossAnatomy:nlx_anat_20090601 xref: OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA xref: SCTID:180920004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray729.png/200px-Gray729.png xref: ncithesaurus:Frontal_Lobe is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001871 name: temporal lobe namespace: uberon alt_id: UBERON:FMA_61825-MA_0000941 def: "Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe." [Wikipedia:Temporal_lobe] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "temporal cortex" EXACT [] synonym: "temporal neocortex" EXACT [DHB:TCx] xref: BM:Tel-Cx-Te xref: BTO:0001355 xref: EFO:0000917 xref: EMAPA:18797 xref: EV:0100169 xref: FMA:61825 xref: GAID:635 xref: MA:0000941 xref: MAT:0000508 xref: MESH:A.08.186.211.730.885.213.863 xref: NIF_GrossAnatomy:birnlex_1160 xref: OpenCyc:Mx4rwQLi-ZwpEbGdrcN5Y29ycA xref: SCTID:180921000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray730.png/200px-Gray730.png xref: ncithesaurus:Temporal_Lobe is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001872 name: parietal lobe namespace: uberon alt_id: UBERON:FMA_61826-MA_0000916 def: "Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "parietal cortex" EXACT [] synonym: "parietal neocortex" EXACT [DHB:PCx] synonym: "parietal region" EXACT [] synonym: "regio parietalis" EXACT [FMA:61826, FMA:TA] xref: BTO:0001001 xref: EFO:0000914 xref: EV:0100168 xref: FMA:61826 xref: GAID:680 xref: MA:0000916 xref: MAT:0000506 xref: MESH:A.08.186.211.730.885.213.670 xref: NIF_GrossAnatomy:birnlex_1148 xref: OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA xref: SCTID:180922007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray726_parietal_lobe.png/200px-Gray726_parietal_lobe.png xref: ncithesaurus:Parietal_Lobe_of_the_Brain is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001873 name: caudate nucleus namespace: uberon alt_id: UBERON:FMA_61833-MA_0000894 def: "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus] comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "caudatus" EXACT [] synonym: "nucleus caudatus" RELATED [BTO:0000211] xref: BM:Tel-CA xref: BTO:0000211 xref: EFO:0000907 xref: EMAPA:18207 xref: EV:0100185 xref: FMA:61833 xref: GAID:670 xref: MA:0000894 xref: MAT:0000513 xref: MESH:A.08.186.211.730.885.105.487.550.184 xref: NIF_GrossAnatomy:birnlex_1373 xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA xref: SCTID:279297002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg xref: ncithesaurus:Caudate_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum relationship: part_of UBERON:0005383 ! caudate-putamen [Term] id: UBERON:0001874 name: putamen namespace: uberon alt_id: UBERON:FMA_61834-MA_0000895 def: "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen] comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus putamen" EXACT [] xref: BM:Tel-Pu xref: EV:0100187 xref: FMA:61834 xref: GAID:671 xref: MA:0000895 xref: MESH:A.08.186.211.730.885.105.487.550.784 xref: NIF_GrossAnatomy:birnlex_809 xref: SCTID:281512002 xref: VHOG:0001456 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png xref: ncithesaurus:Putamen is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum relationship: part_of UBERON:0005383 ! caudate-putamen [Term] id: UBERON:0001875 name: globus pallidus namespace: uberon alt_id: UBERON:FMA_61835-MA_0000890 def: "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle[NIF]. Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA]." [FMA:61835, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus] comment: BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN10:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pale body" EXACT [NIF_GrossAnatomy:birnlex_1234] synonym: "paleostriatum" EXACT [Wikipedia:Globus_pallidus] synonym: "pallidium" RELATED [Wikipedia:Globus_pallidus] synonym: "pallidum" RELATED [GO:0021759, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus] xref: BTO:0002246 xref: EFO:0000905 xref: EV:0100188 xref: FMA:61835 xref: GAID:668 xref: MA:0000890 xref: MAT:0000510 xref: MESH:A.08.186.211.730.885.105.487.397 xref: NIF_GrossAnatomy:birnlex_1234 xref: SCTID:362361005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif xref: ncithesaurus:Globus_Pallidus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 ! basal ganglion relationship: part_of UBERON:0006514 ! pallidum [Term] id: UBERON:0001876 name: amygdala namespace: uberon alt_id: UBERON:FMA_61841-MA_0000887-MIAA_0000289 def: "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [FMA:61841, Wikipedia:Amygdala] comment: AO notes: MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "amygdaloid area" RELATED [] synonym: "amygdaloid body" EXACT [] synonym: "amygdaloid complex" EXACT [NIF_GrossAnatomy:birnlex_1241] synonym: "amygdaloid nuclear complex" EXACT [] synonym: "amygdaloid nuclear group" RELATED [BTO:0001042] synonym: "amygdaloid nuclear groups" EXACT [] synonym: "archistriatum" EXACT [] synonym: "corpus amygdaloideum" RELATED [BTO:0001042] synonym: "nucleus amygdalae" RELATED [BTO:0001042] xref: BM:Tel-Am xref: BTO:0001042 xref: EFO:0000252 xref: EV:0100189 xref: EV:0100190 xref: FMA:61841 xref: GAID:616 xref: MA:0000887 xref: MAT:0000289 xref: MESH:A.08.186.211.577.090 xref: MIAA:0000289 xref: NIF_GrossAnatomy:birnlex_1241 xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA xref: VHOG:0001277 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Amyg.png/200px-Amyg.png xref: ncithesaurus:Amygdala is_a: UBERON:0002420 ! basal ganglion relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0001877 name: medial septal nucleus namespace: uberon alt_id: UBERON:FMA_61879-MA_0000935 comment: This class was created automatically from a combination of ontologies synonym: "medial parolfactory nucleus" EXACT [] synonym: "medial septum" NARROW [NIF_GrossAnatomy:birnlex_1668] xref: ABA:MS xref: BM:Tel-Spt-SMN xref: BTO:0002446 xref: FMA:61879 xref: MA:0000935 xref: NIF_GrossAnatomy:birnlex_1668 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0007629 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! medial septal complex [Term] id: UBERON:0001878 name: septofimbrial nucleus namespace: uberon alt_id: UBERON:FMA_61881-MA_0000938 comment: This class was created automatically from a combination of ontologies synonym: "nucleus septofibrialis" EXACT [NIF_GrossAnatomy:birnlex_730] synonym: "scattered nucleus of the septum" EXACT [] xref: ABA:SF xref: BM:SFN xref: FMA:61881 xref: MA:0000938 xref: NIF_GrossAnatomy:birnlex_730 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0002667 property_value: "spatially_disjoint_from" UBERON:0007630 [Term] id: UBERON:0001879 name: nucleus of diagonal band namespace: uberon alt_id: UBERON:FMA_61882-MA_0000936 comment: This class was created automatically from a combination of ontologies synonym: "diagonal band nucleus" EXACT [] synonym: "nucleus of the diagonal band of broca" EXACT [] synonym: "olfactory area (roberts)" EXACT [] xref: ABA:NDB xref: FMA:61882 xref: MA:0000936 xref: NIF_GrossAnatomy:birnlex_719 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0007629 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! medial septal complex [Term] id: UBERON:0001880 name: bed nucleus of stria terminalis namespace: uberon alt_id: UBERON:FMA_61884-MA_0000925 def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010] comment: This class was created automatically from a combination of ontologies synonym: "BST" BROAD [INCF:Seattle_mtg_2010] synonym: "bed nucleus of the stria terminalis" EXACT [NIF_GrossAnatomy:birnlex_724] synonym: "bed nucleus stria terminalis (johnson)" EXACT [NIF_GrossAnatomy:birnlex_724] synonym: "intercalate nucleus of stria terminalis" EXACT [] synonym: "interstitial nucleus of stria terminalis" EXACT [NIF_GrossAnatomy:birnlex_724] synonym: "nuclei of stria terminalis" EXACT [] synonym: "nucleus of stria terminalis" EXACT [FMA:61884] synonym: "nucleus striae terminalis" EXACT [FMA:61884, FMA:TA] synonym: "stria terminalis nucleus" EXACT [] xref: ABA:BST xref: BM:BNST xref: BTO:0002698 xref: EFO:0001971 xref: FMA:61884 xref: MA:0000925 xref: NIF_GrossAnatomy:birnlex_724 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus is_a: UBERON:0002663 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! septal nuclear complex relationship: part_of UBERON:0000446 ! septum of telencephalon [Term] id: UBERON:0001881 name: island of calleja namespace: uberon alt_id: UBERON:FMA_61888-MA_0000977 def: "The islands of Calleja (IC, ISC, or IClj) are a group of neural granule cells located within the ventral striatum in the brains of most animals. This region of the brain is part of the limbic system, where it aids in the reinforcing effects of reward-like activities. Within most species, the islands are specifically located within the olfactory tubercle; however, in primates these islands are located within the nucleus accumbens, the reward center of the brain, since the olfactory tubercle has practically disappeared in the brains of primates. Both of these structures have been implicated in the processing of incentives as well as addictions to drugs. Projections to and from the islands supplement this knowledge with their involvement in the reward pathways for both cocaine and amphetamines. [WP,unvetted]." [Wikipedia:Islands_of_Calleja] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "calleja island" EXACT [] synonym: "islands of calleja" EXACT [] xref: ABA:isl xref: BM:Tel-ISC xref: FMA:61888 xref: GAID:632 xref: MA:0000977 xref: MESH:A.08.186.211.577.699.400 xref: NIF_GrossAnatomy:birnlex_1113 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Islands_of_Calleja_Rat.jpg/200px-Islands_of_Calleja_Rat.jpg is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001883 ! olfactory tubercle disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon [Term] id: UBERON:0001882 name: nucleus accumbens namespace: uberon alt_id: UBERON:FMA_61889-MA_0000892 def: "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "accumbens nucleus" EXACT [] synonym: "colliculus of caudate nucleus" EXACT [] synonym: "nucleus accumbens septi" EXACT [] xref: ABA:ACB xref: BM:Ac xref: BTO:0001862 xref: EFO:0000906 xref: EHDAA2:0004707 xref: FMA:61889 xref: GAID:672 xref: MA:0000892 xref: MAT:0000512 xref: MESH:A.08.186.211.730.885.105.683 xref: NIF_GrossAnatomy:birnlex_727 xref: SCTID:427667007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg/200px-Circuit_du_syst%C3%A8me_de_recompense.jpg xref: ncithesaurus:Accumbens_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0005403 ! ventral striatum disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon property_value: "spatially_disjoint_from" UBERON:0001883 [Term] id: UBERON:0001883 name: olfactory tubercle namespace: uberon alt_id: UBERON:FMA_61891-MA_0000976 def: "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." [Wikipedia:Anterior_perforated_substance] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior perforated area" EXACT [FMA:61891] synonym: "anterior perforated space" EXACT [FMA:61891] synonym: "anterior perforated substance" EXACT [FMA:61891] synonym: "olfactory area (mai)" EXACT [FMA:61891] synonym: "tuberculum olfactorium" EXACT [FMA:61891, FMA:TA] xref: ABA:OT xref: BM:Tel-OLT xref: BTO:0001869 xref: EHDAA2:0004701 xref: EV:0100177 xref: FMA:61891 xref: MA:0000976 xref: NIF_GrossAnatomy:birnlex_1096 xref: SCTID:369108006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png is_a: UBERON:0004732 ! segmental subdivision of nervous system is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002894 ! olfactory cortex disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon property_value: "spatially_disjoint_from" UBERON:0001882 [Term] id: UBERON:0001884 name: phrenic nerve namespace: uberon alt_id: UBERON:FMA_6191-MA_0001170 def: "The phrenic nerve arises from the third, fourth, and fifth cervical spinal nerves (C3-C5) in humans. [WP,unvetted]." [Wikipedia:Phrenic_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "diaphragmatic nerve" RELATED [BTO:0001063] synonym: "nervus phrenicus" RELATED [BTO:0001063] synonym: "phrenic" RELATED [BTO:0001063] xref: BTO:0001063 xref: EHDAA:4677 xref: EMAPA:17813 xref: FMA:6191 xref: GAID:848 xref: MA:0001170 xref: MESH:A.08.800.800.720.150.700 xref: OpenCyc:Mx4rvtmdUJwpEbGdrcN5Y29ycA xref: SCTID:280344009 xref: VHOG:0000728 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Gray806.png/200px-Gray806.png xref: ncithesaurus:Phrenic_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003443 ! thoracic cavity nerve relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001885 name: dentate gyrus of hippocampal formation namespace: uberon alt_id: UBERON:FMA_61922-MA_0000190 def: "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO]." [Wikipedia:Dentate_gyrus] comment: BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "area dentata" EXACT [] synonym: "dentate gyrus" EXACT [] synonym: "fascia dentata" NARROW [] synonym: "gyrus dentatus" RELATED [BTO:0002496] synonym: "hippocampal dentate gyrus" RELATED [BTO:0002496] xref: ABA:DG xref: BM:Tel-DG xref: BTO:0002496 xref: BTO:0002615 xref: EFO:0001366 xref: EMAPA:19037 xref: FMA:61922 xref: GAID:624 xref: MA:0000190 xref: MESH:A.08.186.211.577.405.200 xref: NIF_GrossAnatomy:birnlex_1178 xref: SCTID:279211002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/HippocampalRegions.jpg/200px-HippocampalRegions.jpg xref: ncithesaurus:Dentate_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002421 ! hippocampal formation property_value: "spatially_disjoint_from" UBERON:0001954 property_value: "spatially_disjoint_from" UBERON:0002601 [Term] id: UBERON:0001886 name: choroid plexus namespace: uberon alt_id: UBERON:FMA_61934-MA_0000823-ZFA_0001443 def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator] comment: TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "chorioid plexus" EXACT [FMA:61934] synonym: "plexus choroideus" EXACT [FMA:61934, FMA:TA] xref: BTO:0000258 xref: EFO:0001915 xref: FMA:61934 xref: GAID:607 xref: MA:0000823 xref: MESH:A.08.186.211.276.298 xref: SCTID:264450003 xref: TAO:0001443 xref: VHOG:0001377 xref: XAO:0004176 xref: ZFA:0001443 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png xref: ncithesaurus:Choroid_Plexus is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0005284 ! brain vasculature is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0004086 ! brain ventricle [Term] id: UBERON:0001887 name: internal capsule namespace: uberon alt_id: UBERON:FMA_61950-MA_0002748 def: "Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex." [Wikipedia:Internal_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "internal capsule radiations" EXACT [] xref: BM:IC xref: EMAPA:18206 xref: FMA:61950 xref: GAID:685 xref: MA:0002748 xref: MESH:A.08.186.211.730.885.435 xref: NIF_GrossAnatomy:birnlex_1659 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg xref: ncithesaurus:Internal_Capsule is_a: UBERON:0002437 ! cerebral white matter relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0001888 name: lateral olfactory stria namespace: uberon alt_id: UBERON:FMA_61971-ZFA_0000229 def: "The olfactory tract is a narrow white band, triangular on coronal section, the apex being directed upward. It lies in the olfactory sulcus on the inferior surface of the frontal lobe, and divides posteriorly into two striC&, a medial and a lateral. The lateral olfactory stria is directed across the lateral part of the anterior perforated substance and then bends abruptly medialward toward the uncus of the hippocampal gyrus. The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance. [WP,unvetted]." [Wikipedia:Lateral_olfactory_stria] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral olfactory tract" EXACT [] synonym: "tractus olfactorius lateralis" EXACT [ZFA:0000229] xref: BM:Tel-LOT xref: EV:0100175 xref: FMA:61971 xref: NIF_GrossAnatomy:birnlex_1559 xref: TAO:0000229 xref: ZFA:0000229 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0002316 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! white matter relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0001889 name: trunk of phrenic nerve namespace: uberon alt_id: UBERON:FMA_6198-MA_0001177 comment: This class was created automatically from a combination of ontologies synonym: "phrenic nerve trunk" EXACT [] synonym: "phrenic neural trunk" EXACT [] xref: EHDAA2:0001463 xref: FMA:6198 xref: MA:0001177 is_a: UBERON:0001147 ! trunk of peripheral nerve relationship: part_of UBERON:0001884 ! phrenic nerve [Term] id: UBERON:0001890 name: forebrain namespace: uberon alt_id: UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109 def: "The most anterior region the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "prosencephalon" RELATED [] xref: AAO:0010147 xref: BTO:0000478 xref: EFO:0000909 xref: EHDAA2:0000556 xref: EHDAA:3470 xref: EMAPA:16895 xref: FMA:61992 xref: MA:0000170 xref: MAT:0000105 xref: MESH:A.08.186.211.730 xref: MIAA:0000105 xref: NIF_GrossAnatomy:birnlex_1509 xref: SCTID:362291003 xref: TAO:0000109 xref: VHOG:0000383 xref: XAO:0000011 xref: ZFA:0000109 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png xref: ncithesaurus:Fore-Brain xref: ncithesaurus:Prosencephalon is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001891 name: midbrain namespace: uberon alt_id: UBERON:FMA_61993-MA_0000207-MIAA_0000106-XAO_0000014-ZFA_0000128 def: "Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct[FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [FMA:61993, GO:0030901, Wikipedia:Midbrain, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mesencephalon" RELATED [] synonym: "midbrain vesicle" RELATED [] xref: AAO:0010149 xref: ABA:MB xref: BM:MB xref: BTO:0000138 xref: EFO:0000919 xref: EHDAA2:0001162 xref: EHDAA:3694 xref: EMAPA:16974 xref: EV:0100242 xref: FMA:61993 xref: MA:0000207 xref: MAT:0000106 xref: MESH:A.08.186.211.132.659 xref: MIAA:0000106 xref: NIF_GrossAnatomy:birnlex_1667 xref: OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001104 xref: SCTID:279099009 xref: TAO:0000128 xref: VHOG:0000069 xref: XAO:0000014 xref: ZFA:0000128 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f9/Human_brain_inferior_view_description.JPG/200px-Human_brain_inferior_view_description.JPG xref: ncithesaurus:Mesencephalon is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002298 ! brainstem property_value: "spatially_disjoint_from" UBERON:0001894 property_value: "spatially_disjoint_from" UBERON:0002028 [Term] id: UBERON:0001892 name: rhombomere namespace: uberon alt_id: UBERON:FMA_61998-MIAA_0000272-ZFA_0001064 def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure. In human embryonic development, the rhombomeres are present by day 29[WP]." [Wikipedia:Rhombomere, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "future rhombencephalon" RELATED [MIAA:0000272] synonym: "hindbrain segment" BROAD [ZFA:0001064] synonym: "rhombomere" EXACT [] synonym: "segment of hindbrain" BROAD [ZFA:0001064] xref: EFO:0003617 xref: EMAPA:16148 xref: EMAPA:16478 xref: MAT:0000272 xref: MIAA:0000272 xref: RETIRED_EHDAA2:0000669 xref: TAO:0001064 xref: VHOG:0000672 xref: XAO:0004079 xref: ZFA:0001064 is_a: UBERON:0004731 ! neuromere is_a: UBERON:0004733 ! segmental subdivision of hindbrain [Term] id: UBERON:0001893 name: telencephalon namespace: uberon alt_id: UBERON:FMA_6200-FMA_62000-MA_0000183-MIAA_0000421-XAO_0000012-ZFA_0000079 def: "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA]." [FMA:62000, Wikipedia:Telencephalon] comment: The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the 'brain' It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine, NIF_GrossAnatomy:birnlex_1115). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cerebrum" EXACT [http://en.wikipedia.org/wiki/Talk:Cerebrum] synonym: "endbrain" EXACT [Swanson:2004] synonym: "telencephalon" EXACT [] xref: AAO:0010479 xref: ABA:CH xref: BM:Tel xref: BTO:0000239 xref: EFO:0000912 xref: EHDAA2:0001982 xref: EMAPA:16652 xref: EMAPA:16910 xref: EV:0100165 xref: FMA:62000 xref: GAID:621 xref: MA:0000183 xref: MAT:0000421 xref: MESH:A.08.186.211.730.885 xref: MIAA:0000421 xref: NIF_GrossAnatomy:birnlex_1115 xref: SCTID:263353005 xref: TAO:0000079 xref: VHOG:0000283 xref: XAO:0000012 xref: ZFA:0000079 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001890 ! forebrain property_value: "spatially_disjoint_from" UBERON:0002037 [Term] id: UBERON:0001894 name: diencephalon namespace: uberon alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101 def: "Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [FMA:62001, Wikipedia:Diencephalon, ZFIN:curator] comment: Note that in ABA, this is part of the brain stem subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "between brain" EXACT [] synonym: "betweenbrain" RELATED [BTO:0000342] synonym: "interbrain" EXACT [Swanson:2004] synonym: "mature diencephalon" EXACT [FMA:62001] xref: AAO:0010481 xref: ABA:IB xref: BM:Die xref: BTO:0000342 xref: EFO:0000911 xref: EHDAA2:0000385 xref: EHDAA:1969 xref: EHDAA:2645 xref: EHDAA:3472 xref: EMAPA:16641 xref: EMAPA:16896 xref: EV:0100194 xref: FMA:62001 xref: GAID:618 xref: MA:0000171 xref: MAT:0000420 xref: MESH:A.08.186.211.730.385 xref: MIAA:0000420 xref: NIF_GrossAnatomy:birnlex_1503 xref: OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA xref: SCTID:279328001 xref: TAO:0000101 xref: VHOG:0000318 xref: XAO:0000013 xref: ZFA:0000101 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png xref: ncithesaurus:Diencephalon is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001890 ! forebrain property_value: "spatially_disjoint_from" UBERON:0001891 property_value: "spatially_disjoint_from" UBERON:0002028 [Term] id: UBERON:0001895 name: metencephalon namespace: uberon alt_id: UBERON:FMA_62003-MA_0000197 def: "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon] comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "epencephalon-2" EXACT [] xref: BTO:0000673 xref: EHDAA2:0001149 xref: EHDAA:5498 xref: EMAPA:17071 xref: FMA:62003 xref: GAID:594 xref: MA:0000197 xref: MESH:A.08.186.211.132.810.428 xref: NIF_GrossAnatomy:birnlex_965 xref: VHOG:0000741 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: part_of UBERON:0002028 ! hindbrain property_value: "dubious_for_taxon" NCBITaxon:7955 [Term] id: UBERON:0001896 name: medulla oblongata namespace: uberon alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545 def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Medulla_oblongata] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bulb" BROAD [] synonym: "bulbus" EXACT [FMA:62004, FMA:TA] synonym: "medulla" BROAD [ABA:MY] synonym: "metepencephalon" RELATED [FMA:62004] xref: AAO:0010486 xref: ABA:MY xref: BTO:0000041 xref: EFO:0000924 xref: EHDAA2:0001088 xref: EHDAA:7588 xref: EMAPA:17550 xref: EV:0100275 xref: FMA:62004 xref: GAID:590 xref: MA:0000206 xref: MAT:0000111 xref: MAT:0000367 xref: MESH:A.08.186.211.132.810.406 xref: MIAA:0000111 xref: NIF_GrossAnatomy:birnlex_957 xref: OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA xref: SCTID:279104005 xref: TAO:0000545 xref: VHOG:0000181 xref: XAO:0003100 xref: ZFA:0000545 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg xref: ncithesaurus:Medulla_Oblongata is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0005290 ! myelencephalon property_value: "spatially_disjoint_from" UBERON:0000988 [Term] id: UBERON:0001897 name: thalamus namespace: uberon alt_id: UBERON:FMA_62007-MA_0000179-MIAA_0000109-ZFA_0001215 def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] comment: AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal thalamus" RELATED [FMA:62007] synonym: "dorsal thalamus (anthoney)" EXACT [FMA:62007] synonym: "thalamus dorsalis" RELATED [BTO:0001365] xref: AAO:0010483 xref: ABA:TH xref: BTO:0001365 xref: EFO:0000910 xref: EMAPA:17540 xref: EV:0100195 xref: FMA:62007 xref: GAID:656 xref: MA:0000179 xref: MAT:0000109 xref: MESH:A.08.186.211.730.385.826 xref: MIAA:0000109 xref: NIF_GrossAnatomy:birnlex_954 xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA xref: SCTID:244433007 xref: TAO:0001215 xref: VHOG:0000657 xref: ZFA:0001215 xref: galen:Thalamus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Brain_chrischan_thalamus.jpg/200px-Brain_chrischan_thalamus.jpg xref: ncithesaurus:Thalamus is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010225 ! thalamic complex property_value: "spatially_disjoint_from" UBERON:0001898 [Term] id: UBERON:0001898 name: hypothalamus namespace: uberon alt_id: UBERON:FMA_62008-MA_0000173-MIAA_0000112-ZFA_0000032 def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator] comment: Taxon notes: all vertebrates contain a hypothalamus[WP]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "preoptico-hypothalamic area" EXACT [] synonym: "preoptico-hypothalamic region" EXACT [] xref: AAO:0010484 xref: ABA:HY xref: BM:Die-Hy xref: BTO:0000614 xref: EFO:0000107 xref: EHDAA2:0000802 xref: EHDAA:5446 xref: EMAPA:17536 xref: EV:0100225 xref: FMA:62008 xref: GAID:460 xref: MA:0000173 xref: MAT:0000112 xref: MESH:A.08.186.211.577.482 xref: MIAA:0000112 xref: NIF_GrossAnatomy:birnlex_734 xref: OpenCyc:Mx4rwEgr9JwpEbGdrcN5Y29ycA xref: SCTID:264483005 xref: TAO:0000032 xref: VHOG:0000179 xref: XAO:0004070 xref: ZFA:0000032 xref: galen:Hypothalamus xref: ncithesaurus:Hypothalamus is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001894 ! diencephalon property_value: "spatially_disjoint_from" UBERON:0001897 [Term] id: UBERON:0001899 name: epithalamus namespace: uberon alt_id: UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509 def: "The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010482 xref: ABA:EPI xref: BM:Die-Epi xref: BTO:0000175 xref: EFO:0000918 xref: EHDAA2:0000448 xref: EHDAA:5433 xref: EMAPA:17532 xref: EV:0100220 xref: FMA:62009 xref: GAID:455 xref: MA:0000172 xref: MAT:0000422 xref: MESH:A.08.186.211.577.200 xref: MIAA:0000422 xref: NIF_GrossAnatomy:birnlex_1710 xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA xref: SCTID:281487003 xref: TAO:0000509 xref: VHOG:0000178 xref: ZFA:0000509 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Epithalamus.png/200px-Epithalamus.png xref: ncithesaurus:Epithalamus is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon property_value: "spatially_disjoint_from" UBERON:0001903 property_value: "spatially_disjoint_from" UBERON:0002733 property_value: "spatially_disjoint_from" UBERON:0002736 [Term] id: UBERON:0001900 name: subthalamus namespace: uberon alt_id: UBERON:FMA_62010-MA_0000181-ZFA_0000458 def: "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO]." [GO:0021539, Wikipedia:Subthalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "prethalamus" EXACT DEVELOPMENTAL [] synonym: "subthalamic region" EXACT [] synonym: "thalamus ventralis" EXACT [NIF_GrossAnatomy:birnlex_708] synonym: "ventral thalamus" EXACT [] xref: BM:Die-VTh xref: EHDAA2:0004470 xref: EV:0100223 xref: FMA:62010 xref: GAID:653 xref: MA:0000181 xref: MESH:A.08.186.211.730.385.800 xref: NIF_GrossAnatomy:birnlex_708 xref: SCTID:279332007 xref: TAO:0000458 xref: ZFA:0000458 xref: ncithesaurus:Ventral_Thalamus is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0001901 name: epithelium of trachea namespace: uberon alt_id: UBERON:0003227 alt_id: UBERON:FMA_62015-MA_0001862 comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic] synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic] synonym: "epithelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea epithelial tissue" EXACT [OBOL:automatic] synonym: "trachea epithelium" EXACT [] synonym: "tracheal epithelium" EXACT [] synonym: "windpipe epithelial tissue" EXACT [OBOL:automatic] synonym: "windpipe epithelium" EXACT [OBOL:automatic] xref: BTO:0001389 xref: EHDAA2:0002069 xref: EHDAA:5007 xref: EMAPA:16855 xref: EMAPA:18409 xref: FMA:62015 xref: MA:0001862 xref: VHOG:0001045 xref: ncithesaurus:Tracheal_Epithelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0004815 ! lower respiratory tract epithelium [Term] id: UBERON:0001902 name: epithelium of small intestine namespace: uberon alt_id: UBERON:FMA_62017-MA_0001553 def: "An epithelium that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic] synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic] synonym: "epithelium of small bowel" EXACT [OBOL:automatic] synonym: "mid intestine epithelium" EXACT [ZFA:0005127] synonym: "small bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "small bowel epithelium" EXACT [OBOL:automatic] synonym: "small intestinal epithelium" EXACT [] synonym: "small intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "small intestine epithelium" EXACT [] xref: BTO:0001258 xref: FMA:62017 xref: MA:0001553 xref: SCTID:45480009 xref: ZFA:0005127 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0001903 name: thalamic reticular nucleus namespace: uberon alt_id: UBERON:FMA_62026-MA_0000876 def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [Wikipedia:Thalamic_reticular_nucleus] comment: AO notes: only MA considers this part of a subthalamus; MA also considers a subthalamus part of a thalamus subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus reticularis thalami" EXACT [FMA:62026, FMA:TA] synonym: "reticular nuclear group" EXACT [] synonym: "reticular nucleus of thalamus" EXACT [] synonym: "reticular nucleus of the thalamus" EXACT [] synonym: "reticular nucleus-2" EXACT [] synonym: "reticular thalamic nucleus" EXACT [] xref: ABA:RT xref: BM:Die-VTh-R xref: EV:0100214 xref: FMA:62026 xref: MA:0000876 xref: NIF_GrossAnatomy:birnlex_1721 xref: SCTID:279164008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Constudthal.gif/200px-Constudthal.gif is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001900 ! subthalamus property_value: "spatially_disjoint_from" UBERON:0001899 property_value: "spatially_disjoint_from" UBERON:0002733 property_value: "spatially_disjoint_from" UBERON:0002736 [Term] id: UBERON:0001904 name: habenula namespace: uberon alt_id: UBERON:FMA_62032-MA_0000830-ZFA_0000213 def: "Habenula is a segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [Wikipedia:Habenula, ZFIN:curator] comment: TODO - add separate term for nucleus (e.g. BTO:0003685 habenular nucleus) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "habenulae" RELATED [] synonym: "habenular nuclei" RELATED [] synonym: "habenular nucleus" RELATED [] xref: BTO:0003684 xref: EV:0100222 xref: FMA:62032 xref: GAID:619 xref: MA:0000830 xref: MESH:A.08.186.211.577.200.360 xref: NIF_GrossAnatomy:birnlex_1611 xref: SCTID:362389008 xref: TAO:0000213 xref: ZFA:0000213 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0001905 name: pineal body namespace: uberon alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160 def: "The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_body] comment: AO notes: part of midbrain in HOG, but this is inconsistent with ABA. subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "corpus pineale" EXACT [] synonym: "epiphysis" RELATED [ZFA:0000019] synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] synonym: "glandula pinealis" EXACT [FMA:62033, FMA:TA] synonym: "pineal gland" EXACT [FMA:62033] synonym: "pineal organ" EXACT [ZFA:0000019] xref: AAO:0010549 xref: ABA:PIN xref: BM:P xref: BTO:0001067 xref: EFO:0000865 xref: EHDAA2:0001466 xref: EHDAA:7523 xref: EMAPA:18778 xref: EV:0100131 xref: EV:0100221 xref: FMA:62033 xref: GAID:453 xref: MA:0000175 xref: MAT:0000448 xref: MESH:A.06.407.635 xref: NIF_GrossAnatomy:birnlex_1184 xref: NIF_GrossAnatomy:nlx_anat_1010009 xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA xref: SCTID:181126002 xref: VHOG:0000051 xref: XAO:0000160 xref: ZFA:0000019 xref: galen:PinealGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg xref: ncithesaurus:Pineal_Gland is_a: UBERON:0002757 ! regional part of epithalamus is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0010134 ! secretory circumventricular organ relationship: part_of UBERON:0001899 ! epithalamus relationship: part_of UBERON:0001891 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! midbrain relationship: part_of UBERON:0002104 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! visual system relationship: part_of UBERON:0002104 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! visual system property_value: "spatially_disjoint_from" UBERON:0001941 property_value: "spatially_disjoint_from" UBERON:0001942 [Term] id: UBERON:0001906 name: subthalamic nucleus namespace: uberon alt_id: UBERON:FMA_62035-MA_0000877 def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [Wikipedia:Subthalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Luys' body" RELATED [BTO:0002252] synonym: "body of forel" EXACT [] synonym: "body of luys" EXACT [] synonym: "nucleus of corpus luysii" EXACT [] synonym: "nucleus of luys" EXACT [] synonym: "nucleus subthalamicus" RELATED [BTO:0002252] synonym: "subthalamic nucleus (of luys)" EXACT [] xref: ABA:STN xref: BM:Die-Sb xref: BTO:0002252 xref: EFO:0001392 xref: EV:0100224 xref: FMA:62035 xref: GAID:655 xref: MA:0000877 xref: MESH:A.08.186.211.730.385.800.800 xref: NIF_GrossAnatomy:nlx_anat_1010002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Basal-ganglia-coronal-sections-large.png/200px-Basal-ganglia-coronal-sections-large.png xref: ncithesaurus:Subthalamic_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001900 ! subthalamus property_value: "spatially_disjoint_from" UBERON:0001907 property_value: "spatially_disjoint_from" UBERON:0001931 property_value: "spatially_disjoint_from" UBERON:0001933 property_value: "spatially_disjoint_from" UBERON:0002430 [Term] id: UBERON:0001907 name: zona incerta namespace: uberon alt_id: UBERON:FMA_62038-MA_0000878 def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to blimbicbmotor integrationb such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a bregion of which nothing certain can be saidb. A hundred and thirty years later in 2007, Nadia Urbain and Martin DeschC*nes of UniversitC) Laval noted that the bzona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. b [WP,unvetted]." [Wikipedia:Zona_incerta] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: ABA:ZI xref: BM:Die-VTh-ZI xref: BTO:0003146 xref: FMA:62038 xref: MA:0000878 xref: SCTID:369186007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001900 ! subthalamus property_value: "spatially_disjoint_from" UBERON:0001906 property_value: "spatially_disjoint_from" UBERON:0001931 property_value: "spatially_disjoint_from" UBERON:0001933 property_value: "spatially_disjoint_from" UBERON:0002430 [Term] id: UBERON:0001908 name: optic tract namespace: uberon alt_id: UBERON:FMA_62046-ZFA_0000252 def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [NULL:NIF_GrossAnatomy, Wikipedia:Optic_tract, ZFIN:curator] comment: editor note: relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "optic lemniscus" EXACT [] synonym: "visual pathway" RELATED [GAID:735] xref: BM:Tel-OT xref: FMA:62046 xref: GAID:735 xref: MA:0001099 xref: MESH:A.08.612.220.860 xref: NIF_GrossAnatomy:birnlex_1684 xref: SCTID:280952003 xref: TAO:0000252 xref: VHOG:0001164 xref: XAO:0004101 xref: ZFA:0000252 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray773.png/200px-Gray773.png xref: ncithesaurus:Optic_Tract is_a: UBERON:0001018 ! axon tract is_a: UBERON:0003931 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic white matter relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0001909 name: habenular commissure namespace: uberon alt_id: UBERON:FMA_62048-ZFA_0000359 def: "The habenular commissure, is a brain commissure (a band of nerve fibers) situated in front of the pineal gland that connects the habenular nucleus on one side of the diencephalon with that on the other side. The habernular commissure is part of the trigonum habenulC& (a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the tC&nia thalami). The trigonum habenulC& also contains groups of nerve cells termed the ganglion habenulC&. Fibers enter the trigonum habenulC& from the stalk of the pineal gland, and the habenular commissure. Most of the trigonum habenulC&'s fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. Nerve cell fibers enter the trigonum habenulC& from the stalk of the pineal body, and the habernular commissure. [WP,unvetted]." [Wikipedia:Habenular_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "commissura habenularum" EXACT [ZFA:0000359] synonym: "commissure habenularum" EXACT [MP:0008231] xref: BM:Die-Epi-HC xref: FMA:62048 xref: NIF_GrossAnatomy:birnlex_1609 xref: SCTID:279335009 xref: TAO:0000359 xref: ZFA:0000359 is_a: UBERON:0002757 ! regional part of epithalamus is_a: UBERON:0005341 ! ventral commissure is_a: UBERON:0005970 ! brain commissure is_a: UBERON:0003931 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic white matter relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0001910 name: medial forebrain bundle namespace: uberon alt_id: UBERON:FMA_62064-ZFA_0005111 def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [Wikipedia:Medial_forebrain_bundle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "medial forebrain fasciculus" EXACT [] synonym: "telencephalic medial fasciculus" EXACT [] xref: FMA:62064 xref: GAID:736 xref: MESH:A.08.612.492 xref: NIF_GrossAnatomy:birnlex_908 xref: TAO:0005111 xref: ZFA:0005111 xref: ncithesaurus:Medial_Forebrain_Bundle is_a: UBERON:0005838 ! fasciculus of brain is_a: UBERON:0002316 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! white matter relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001911 name: mammary gland namespace: uberon alt_id: UBERON:FMA_62088-MA_0000145-MIAA_0000073-Mammary def: "The specialized accessory gland of the skin of female mammals that secretes milk. In the human female, it is a compound tubuloalveolar gland composed of 15 to 25 lobes arranged radially about the nipple and separated by connective and adipose tissue, each lobe having its own excretory (lactiferous) duct opening on the nipple. The lobes are subdivided into lobules, with the alveolar ducts and alveoli being the secretory portion of the gland[BTO]. The mouse forms five to six pairs of mammary glands that extend from the neck to the groin." [BTO:0000817, Wikipedia:Mammary_gland] comment: Note that this class corresponds to the generic mammary gland. The human mammary gland is in the thoracic/breast region and is therefore covered by the subclass \"thoracic mammary gland\" // Males typically only have rudimentary mammary glands, The male Dayak fruit bat has lactating mammary glands. Male lactation occurs infrequently in some species. We make a part_of association to female organism for now as this is the canonical case subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Brustdruese" RELATED [BTO:0000817] synonym: "dug" RELATED [Wikipedia:Mammary_gland] synonym: "glandula mammaria" EXACT PLURAL [FMA:57983, FMA:TA] synonym: "lactiferous gland" EXACT [FMA:62088] synonym: "lobe of breast" EXACT [] synonym: "lobe of mammary gland" EXACT [] synonym: "mamma" RELATED [BTO:0000817] xref: BTO:0000817 xref: EFO:0000854 xref: EMAPA:17759 xref: EV:0100125 xref: MA:0000145 xref: MAT:0000073 xref: MESH:A.10.336.482 xref: MIAA:0000073 xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA xref: SCTID:361720005 xref: VHOG:0000398 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_breast_anatomy.jpg/200px-Illu_breast_anatomy.jpg xref: ncithesaurus:Mammary_Gland is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0003297 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gland of integumental system relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0001912 name: lobule of lactiferous gland namespace: uberon alt_id: UBERON:FMA_62090-MA_0000793 def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA]" [FMA:62090] comment: TODO - ensure correct terminology for lobes/lobules. FMA uses lobule for core term, but also has 'set of mammary gland lobes'. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "acinus of mammary gland" EXACT [] synonym: "breast lobe" RELATED [BTO:0004718] synonym: "lactiferous acinus" EXACT [] synonym: "lactiferous gland lobule" EXACT [] synonym: "lactiferous lobule" EXACT [] synonym: "lobe of breast" RELATED [BTO:0004718] synonym: "lobe of mammary gland" RELATED [BTO:0004718] synonym: "lobi glandulae mammariae" RELATED [BTO:0004718] synonym: "lobule of mammary gland" EXACT [] synonym: "lobus glandulae mammariae" RELATED [BTO:0004718] synonym: "mammary acinus" EXACT [] synonym: "mammary gland lobule" EXACT [] xref: BTO:0004718 xref: FMA:62090 xref: MA:0000793 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0001913 name: milk namespace: uberon alt_id: UBERON:FMA_62100-MA_0002552-MIAA_0000056 def: "Secretion produced by the mammary gland.[FMA]" [FMA:FMA, Wikipedia:Breast_milk] comment: AO notes: ncit refers specifically to cow milk subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "mammary gland milk" EXACT [] xref: BTO:0000868 xref: ENVO:02000031 xref: EV:0100126 xref: FMA:62100 xref: GAID:1230 xref: MA:0002552 xref: MAT:0000056 xref: MESH:A.13.622 xref: MIAA:0000056 xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA xref: VHOG:0001263 xref: galen:Milk xref: ncithesaurus:Milk is_a: UBERON:0000456 ! bodily secretion is_a: UBERON:0006539 ! mammary gland fluid/secretion [Term] id: UBERON:0001914 name: colostrum namespace: uberon alt_id: UBERON:FMA_62101-MA_0002551 def: "The thin, yellow, serous fluid secreted by the mammary glands during pregnancy and immediately postpartum before lactation begins. It consists of immunologically active substances, white blood cells, water, protein, fat, and carbohydrates." [MESH:A.12.200.194, Wikipedia:Colostrum] comment: AO notes: we follow in MA in making this is a sib of mammary gland milk, rather than a subclass. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000276 xref: FMA:62101 xref: GAID:1159 xref: MA:0002551 xref: MESH:A.12.200.194 xref: ncithesaurus:Colostrum is_a: UBERON:0000456 ! bodily secretion is_a: UBERON:0006539 ! mammary gland fluid/secretion [Term] id: UBERON:0001915 name: endothelium of capillary namespace: uberon alt_id: UBERON:FMA_62114-MA_0000711 def: "An endothelium that is part of a capillary [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "blood capillary endothelium" EXACT [OBOL:automatic] synonym: "capillary endothelium" EXACT [] synonym: "capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel" EXACT [OBOL:automatic] xref: BTO:0004954 xref: FMA:62114 xref: MA:0000711 xref: ncithesaurus:Capillary_Endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0004638 ! blood vessel endothelium relationship: part_of UBERON:0001982 ! capillary [Term] id: UBERON:0001916 name: endothelium of arteriole namespace: uberon alt_id: UBERON:FMA_62115-MA_0000705 def: "An endothelium that is part of an arteriole [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arteriole endothelium" EXACT [] xref: FMA:62115 xref: MA:0000705 xref: ncithesaurus:Arteriole_Endothelium is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0001986 ! endothelium relationship: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0001917 name: endothelium of artery namespace: uberon alt_id: UBERON:FMA_62116-MA_0000707-XAO_0000357 def: "An endothelium that is part of an artery [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arterial endothelium" EXACT [] synonym: "artery endothelium" EXACT [] xref: AAO:0011013 xref: BTO:0004757 xref: FMA:62116 xref: MA:0000707 xref: VHOG:0001215 xref: XAO:0000357 xref: ncithesaurus:Artery_Endothelium is_a: UBERON:0003915 ! endothelial tube is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004700 ! arterial system endothelium [Term] id: UBERON:0001918 name: endothelium of venule namespace: uberon alt_id: UBERON:FMA_62117-MA_0000716 def: "An endothelium that is part of a venule [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "venule endothelium" EXACT [] xref: FMA:62117 xref: MA:0000716 xref: ncithesaurus:Venule_Endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium relationship: part_of UBERON:0001979 ! venule [Term] id: UBERON:0001919 name: endothelium of vein namespace: uberon alt_id: UBERON:FMA_62118-MA_0000712 def: "An endothelium that is part of a vein [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "vein endothelium" EXACT [] synonym: "venous endothelium" EXACT [] xref: AAO:0011110 xref: BTO:0004756 xref: FMA:62118 xref: MA:0000712 xref: VHOG:0001216 xref: XAO:0000358 xref: ncithesaurus:Vein_Endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004701 ! venous system endothelium [Term] id: UBERON:0001920 name: paraventricular nucleus of thalamus namespace: uberon alt_id: UBERON:FMA_62152-MA_0000866 def: "The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle." [Dorlands_Medical_Dictionary:MerckSource] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nuclei paraventriculares thalami" EXACT [FMA:62152, FMA:TA] synonym: "paraventricular gray" EXACT [] synonym: "paraventricular nuclei" RELATED PLURAL [] synonym: "paraventricular nuclei of thalamus" EXACT PLURAL [] synonym: "paraventricular thalamic nucleus" EXACT [] xref: ABA:PVT xref: BM:Die-Th-Pa xref: BTO:0002460 xref: FMA:62152 xref: MA:0000866 xref: NIF_GrossAnatomy:birnlex_764 xref: SCTID:369163000 xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002705 ! midline nuclear group property_value: "spatially_disjoint_from" UBERON:0002992 [Term] id: UBERON:0001921 name: reuniens nucleus namespace: uberon alt_id: UBERON:FMA_62153-MA_0000865 comment: This class was created automatically from a combination of ontologies synonym: "medioventral nucleus" EXACT [] synonym: "nucleus reuniens" EXACT [] synonym: "reuniens thalamic nucleus" EXACT [] xref: BTO:0002459 xref: FMA:62153 xref: MA:0000865 xref: NIF_GrossAnatomy:birnlex_770 xref: SCTID:369164006 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002705 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! midline nuclear group [Term] id: UBERON:0001922 name: parafascicular nucleus namespace: uberon alt_id: UBERON:FMA_62166-MA_0000874 comment: This class was created automatically from a combination of ontologies synonym: "nuclei parafasciculares thalami" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "nucleus parafascicularis" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "nucleus parafascicularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "nucleus parafascicularis thalami" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "parafascicular nucleus (vogt)" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "parafascicular nucleus of thalamus" EXACT [] synonym: "parafascicular nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "parafascicular thalamic nucleus" EXACT [] xref: ABA:PF xref: BM:Die-Th-Pf xref: EV:0100202 xref: FMA:62166 xref: MA:0000874 xref: NIF_GrossAnatomy:birnlex_952 xref: SCTID:279150008 xref: ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002733 ! intralaminar nuclear group property_value: "spatially_disjoint_from" UBERON:0001923 property_value: "spatially_disjoint_from" UBERON:0001924 property_value: "spatially_disjoint_from" UBERON:0002955 property_value: "spatially_disjoint_from" UBERON:0003036 [Term] id: UBERON:0001923 name: central medial nucleus namespace: uberon alt_id: UBERON:FMA_62171-MA_0000872 def: "a small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929] comment: This class was created automatically from a combination of ontologies synonym: "central medial nucleus of thalamus" EXACT [] synonym: "central medial nucleus thalamus (rioch 1928)" EXACT [NIF_GrossAnatomy:birnlex_971] synonym: "central medial thalamic nucleus" EXACT [] synonym: "nucleus centralis medialis" EXACT [NIF_GrossAnatomy:birnlex_971] synonym: "nucleus centralis medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_971] xref: ABA:CM xref: BM:Die-CeM xref: BTO:0003753 xref: FMA:62171 xref: MA:0000872 xref: NIF_GrossAnatomy:birnlex_971 xref: SCTID:279161000 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0001922 property_value: "spatially_disjoint_from" UBERON:0001924 property_value: "spatially_disjoint_from" UBERON:0002955 property_value: "spatially_disjoint_from" UBERON:0003036 [Term] id: UBERON:0001924 name: paracentral nucleus namespace: uberon alt_id: UBERON:FMA_62172-MA_0000873 def: "one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928] comment: todo - relationships synonym: "nucleus centralis lateralis superior (kusama)" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "nucleus paracentral" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "nucleus paracentral thalami" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "nucleus paracentralis thalami" EXACT [FMA:62172, FMA:TA] synonym: "paracentral nucleus of thalamus" EXACT [] synonym: "paracentral nucleus thalamus (gurdjian 1927)" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "paracentral thalamic nucleus" EXACT [] xref: ABA:PCN xref: BM:Die-Th-Pc xref: EV:0100204 xref: FMA:62172 xref: MA:0000873 xref: NIF_GrossAnatomy:birnlex_981 xref: SCTID:279152000 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002733 ! intralaminar nuclear group property_value: "spatially_disjoint_from" UBERON:0001922 property_value: "spatially_disjoint_from" UBERON:0001923 property_value: "spatially_disjoint_from" UBERON:0002955 property_value: "spatially_disjoint_from" UBERON:0003036 [Term] id: UBERON:0001925 name: ventral lateral nucleus namespace: uberon alt_id: UBERON:FMA_62186-ZFA_0000306 def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_lateral_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral ventral nucleus of thalamus" EXACT [] synonym: "nuclei ventrales laterales thalami" RELATED [BTO:0002463] synonym: "nucleus ventralis intermedius" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventralis lateralis" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventralis lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventralis thalami lateralis" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventrolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "ventral lateral complex of thalamus" EXACT [] synonym: "ventral lateral nuclei of thalamus" RELATED [BTO:0002463] synonym: "ventral lateral nucleus of thalamus" EXACT [] synonym: "ventral lateral thalamic nuclei" EXACT [] synonym: "ventral lateral thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "ventrolateral nucleus of the thalamus" EXACT [] synonym: "ventrolateral thalamic nucleus" EXACT [] xref: BM:Die-Th-VL xref: BTO:0002463 xref: FMA:62186 xref: NIF_GrossAnatomy:birnlex_1237 xref: SCTID:279146001 xref: TAO:0000306 xref: ZFA:0000306 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus is_a: UBERON:0002776 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! ventral nuclear group relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0001926 name: lateral geniculate body namespace: uberon alt_id: UBERON:FMA_62209-MA_0000869 def: "The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]." [Wikipedia:Lateral_geniculate_body] comment: Note that BTO has distinct classes for body and nucleus, but other sources treat as identical subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "corpus geniculatum externum" RELATED [BTO:0004367] synonym: "corpus geniculatum laterales" EXACT [NIF_GrossAnatomy:birnlex_1662] synonym: "external geniculate body" RELATED [Wikipedia:Lateral_geniculate_nucleus] synonym: "lateral geniculate complex" EXACT [] synonym: "lateral geniculate nucleus" EXACT [] synonym: "nucleus geniculatus lateralis" EXACT [NIF_GrossAnatomy:birnlex_1662] xref: BTO:0004366 xref: BTO:0004367 xref: EFO:0001988 xref: EV:0100219 xref: FMA:62209 xref: MA:0000869 xref: NIF_GrossAnatomy:birnlex_1662 xref: SCTID:362377006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png xref: ncithesaurus:External_Geniculate_Body is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002704 ! metathalamus [Term] id: UBERON:0001927 name: medial geniculate body namespace: uberon alt_id: UBERON:FMA_62211-MA_0000870 def: "The Medial Geniculate Nucleus (MGN) or Medial Geniculate Body (MGB) is part of the auditory thalamus and represents the thalamic relay between the inferior colliculus (IC) and the auditory cortex (AC). It is made up of a number of sub-nuclei that are distinguished by their neuronal morphology and density, by their afferent and efferent connections, and by the coding properties of their neurons. It is thought that the MGB influences the direction and maintenance of attention. [WP,unvetted]." [Wikipedia:Medial_geniculate_body] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "MGB" RELATED [BTO:0002674] synonym: "corpus geniculatum mediale" EXACT [NIF_GrossAnatomy:birnlex_1670] synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body] synonym: "medial geniculate complex" EXACT [] synonym: "medial geniculate nuclei" EXACT [] synonym: "medial geniculate nucleus" EXACT [] synonym: "nuclei corporis geniculati medialis" EXACT [FMA:62211, FMA:TA] xref: ABA:MG xref: BM:Die-Th-MG xref: BTO:0002674 xref: EFO:0001968 xref: EV:0100218 xref: FMA:62211 xref: MA:0000870 xref: NIF_GrossAnatomy:birnlex_1670 xref: SCTID:362378001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: ncithesaurus:Internal_Geniculate_Body is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002704 ! metathalamus property_value: "spatially_disjoint_from" UBERON:0002479 [Term] id: UBERON:0001928 name: preoptic area namespace: uberon alt_id: UBERON:FMA_62313-ZFA_0000470 def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus[ZFA]." [Wikipedia:Preoptic_area, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "area hypothalamica rostralis" RELATED [BTO:0001796] synonym: "area praeoptica" RELATED [] synonym: "area preoptica" RELATED [] synonym: "preoptic hypothalamic area" RELATED [BTO:0001796] synonym: "preoptic hypothalamic region" RELATED [BTO:0001796] synonym: "preoptic nuclei" EXACT [] synonym: "preoptic region" RELATED [] synonym: "preoptic region of hypothalamus" EXACT [] synonym: "regio hypothalamica anterior" RELATED [BTO:0001796] xref: BM:Die-Hy-POA xref: BTO:0001796 xref: EFO:0002523 xref: FMA:62313 xref: GAID:644 xref: MESH:A.08.186.211.730.385.357.342.450 xref: NIF_GrossAnatomy:birnlex_1706 xref: SCTID:362382004 xref: TAO:0000470 xref: ZFA:0000470 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001929 name: supraoptic nucleus namespace: uberon alt_id: UBERON:FMA_62317-MA_0000849 def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. In humans, it contains about 3,000 neurons. [WP,unvetted]." [Wikipedia:Supraoptic_nucleus, https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus supraopticus" EXACT [BTO:0002697] synonym: "supra-optic nucleus" EXACT [] synonym: "supraoptic nucleus of hypothalamus" EXACT [] xref: ABA:SO xref: BM:Die-Hy-SON xref: BTO:0002697 xref: EFO:0002476 xref: EV:0100227 xref: FMA:62317 xref: GAID:646 xref: MA:0000849 xref: MESH:A.08.186.211.730.385.357.342.650 xref: NIF_GrossAnatomy:birnlex_1411 xref: SCTID:369130007 xref: http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! hypothalamic nucleus is_a: UBERON:0010135 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! sensory circumventricular organ relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus relationship: part_of UBERON:0002550 ! anterior hypothalamic region property_value: "spatially_disjoint_from" UBERON:0001930 property_value: "spatially_disjoint_from" UBERON:0001932 [Term] id: UBERON:0001930 name: paraventricular nucleus of hypothalamus namespace: uberon alt_id: UBERON:FMA_62320-MA_0000848 def: "The paraventricular nucleus (PVN) is a neuronal nucleus in the hypothalamus. It contains multiple subpopulations of neurons that are activated by a variety of stressful and/or physiological changes. Many PVH neurons project directly to the posterior pituitary where they release oxytocin or vasopressin into the general circulation. Other PVN neurons control various anterior pituitary functions, while still others directly regulate appetite and autonomic functions in the brainstem and spinal cord. [WP,unvetted]." [Wikipedia:Paraventricular_nucleus_of_hypothalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "filiform nucleus" EXACT [] synonym: "nucleus paraventricularis hypothalami" RELATED [BTO:0002476] synonym: "paraventricular hypothalamic nucleus" EXACT [] synonym: "paraventricular nucleus" EXACT [] xref: ABA:PVH xref: BM:Die-Hy-PAH xref: BTO:0002476 xref: EFO:0002469 xref: EV:0100229 xref: FMA:62320 xref: GAID:643 xref: MA:0000848 xref: MESH:A.08.186.211.730.385.357.342.400 xref: NIF_GrossAnatomy:birnlex_1407 xref: SCTID:369131006 xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus property_value: "spatially_disjoint_from" UBERON:0001929 property_value: "spatially_disjoint_from" UBERON:0001932 [Term] id: UBERON:0001931 name: lateral preoptic nucleus namespace: uberon alt_id: UBERON:FMA_62326-MA_0000835 def: "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]." [Wikipedia:Preoptic_area#Lateral_preoptic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral preoptic area" EXACT [] synonym: "lateral preoptic hypothalamic nucleus" EXACT [] xref: ABA:LPO xref: BM:Die-Hy-LPO xref: FMA:62326 xref: MA:0000835 xref: NIF_GrossAnatomy:birnlex_1722 xref: SCTID:369129002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus property_value: "spatially_disjoint_from" UBERON:0001906 property_value: "spatially_disjoint_from" UBERON:0001907 property_value: "spatially_disjoint_from" UBERON:0001933 property_value: "spatially_disjoint_from" UBERON:0002430 [Term] id: UBERON:0001932 name: arcuate nucleus of hypothalamus namespace: uberon alt_id: UBERON:FMA_62329-MA_0000847 def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arcuate hypothalamic nucleus" EXACT [] synonym: "arcuate nucleus" EXACT [] synonym: "arcuate nucleus-2" EXACT [] synonym: "arcuate periventricular nucleus" EXACT [] synonym: "infundibular hypothalamic nucleus" EXACT [] synonym: "infundibular nucleus" EXACT [] synonym: "infundibular periventricular nucleus" EXACT [] synonym: "nucleus arcuatus" EXACT [FMA:62329, FMA:TA] synonym: "nucleus arcuatus hypothalami" RELATED [BTO:0002473] synonym: "nucleus infundibularis" RELATED [BTO:0002473] synonym: "nucleus semilunaris" RELATED [BTO:0002473] xref: ABA:ARH xref: BM:HAr xref: BTO:0002473 xref: EV:0100230 xref: FMA:62329 xref: GAID:647 xref: MA:0000847 xref: MESH:A.08.186.211.730.385.357.352.081 xref: NIF_GrossAnatomy:birnlex_1638 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: ncithesaurus:Arcuate_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus property_value: "spatially_disjoint_from" UBERON:0001929 property_value: "spatially_disjoint_from" UBERON:0001930 [Term] id: UBERON:0001933 name: retrochiasmatic area namespace: uberon alt_id: UBERON:FMA_62330-MA_0000841 comment: This class was created automatically from a combination of ontologies synonym: "retrochiasmatic region" EXACT [] xref: ABA:RCH xref: FMA:62330 xref: MA:0000841 xref: NIF_GrossAnatomy:birnlex_1569 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002272 ! medial zone of hypothalamus property_value: "spatially_disjoint_from" UBERON:0001906 property_value: "spatially_disjoint_from" UBERON:0001907 property_value: "spatially_disjoint_from" UBERON:0001931 property_value: "spatially_disjoint_from" UBERON:0002430 [Term] id: UBERON:0001934 name: dorsomedial nucleus of hypothalamus namespace: uberon alt_id: UBERON:FMA_62331-MA_0000838 def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsomedial hypothalamic nucleus" EXACT [] synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT [] synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT [] synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474] xref: ABA:DMH xref: BM:Die-Hy-DMH xref: BTO:0002474 xref: EV:0100232 xref: FMA:62331 xref: GAID:648 xref: MA:0000838 xref: MESH:A.08.186.211.730.385.357.352.270 xref: NIF_GrossAnatomy:birnlex_1558 xref: SCTID:369134003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0002951 ! regional part of intermediate hypothalamic region is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002272 ! medial zone of hypothalamus relationship: part_of UBERON:0002555 ! intermediate hypothalamic region property_value: "spatially_disjoint_from" UBERON:0002034 property_value: "spatially_disjoint_from" UBERON:0002219 property_value: "spatially_disjoint_from" UBERON:0002625 property_value: "spatially_disjoint_from" UBERON:0002689 property_value: "spatially_disjoint_from" UBERON:0002690 property_value: "spatially_disjoint_from" UBERON:0007626 [Term] id: UBERON:0001935 name: ventromedial nucleus of hypothalamus namespace: uberon alt_id: UBERON:FMA_62332-MA_0000845 def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Ventromedial_hypothalamic_nucleus] comment: part of tuberal area in MA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus ventromedialis hypothalami" RELATED [BTO:0002472] synonym: "ventrolateral hypothalamic nucleus" RELATED [BTO:0002472] synonym: "ventrolateral nucleus of hypothalamus" RELATED [BTO:0002472] synonym: "ventromedial hypothalamic nucleus" EXACT [] synonym: "ventromedial nucleus of hypothalamus." RELATED [BTO:0002472] xref: ABA:VMH xref: BM:VMH xref: BTO:0002472 xref: EV:0100233 xref: FMA:62332 xref: GAID:650 xref: MA:0000845 xref: MESH:A.08.186.211.730.385.357.352.953 xref: NIF_GrossAnatomy:birnlex_1572 xref: SCTID:369124007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0002951 ! regional part of intermediate hypothalamic region is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002555 ! intermediate hypothalamic region property_value: "spatially_disjoint_from" UBERON:0002035 property_value: "spatially_disjoint_from" UBERON:0002206 property_value: "spatially_disjoint_from" UBERON:0002634 property_value: "spatially_disjoint_from" UBERON:0002706 [Term] id: UBERON:0001936 name: tuberomammillary nucleus namespace: uberon alt_id: UBERON:FMA_62335-MA_0000853 def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [Wikipedia:Tuberomammillary_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "caudal magnocellular nucleus" EXACT [] synonym: "mammilloinfundibular nucleus" EXACT [] synonym: "mammiloinfundibular nucleus" EXACT [NIF_GrossAnatomy:birnlex_1271] synonym: "tuberomamillary nucleus" RELATED DUBIOUS [EV:0100237] synonym: "tuberomammillary hypothalamic nucleus" EXACT [] xref: ABA:TM xref: EV:0100237 xref: FMA:62335 xref: MA:0000853 xref: NIF_GrossAnatomy:birnlex_1271 xref: SCTID:369122006 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002206 ! mammillary body relationship: part_of UBERON:0002430 ! lateral hypothalamic area property_value: "spatially_disjoint_from" UBERON:0001938 property_value: "spatially_disjoint_from" UBERON:0001939 property_value: "spatially_disjoint_from" UBERON:0001940 [Term] id: UBERON:0001937 name: lateral hypothalamic nucleus namespace: uberon alt_id: UBERON:FMA_62337-ZFA_0000227 comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: EV:0100234 xref: FMA:62337 xref: NIF_GrossAnatomy:birnlex_1199 xref: SCTID:360452004 xref: TAO:0000227 xref: ZFA:0000227 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0001938 name: lateral mammillary nucleus namespace: uberon alt_id: UBERON:FMA_62341-MA_0000850 comment: This class was created automatically from a combination of ontologies synonym: "lateral mammillary hypothalamic nucleus" EXACT [] synonym: "lateral nucleus of mammillary body" EXACT [] synonym: "nucleus mammillaris lateralis" EXACT [FMA:62341, FMA:TA] xref: ABA:LM xref: EV:0100239 xref: FMA:62341 xref: MA:0000850 xref: NIF_GrossAnatomy:birnlex_1460 xref: SCTID:369143007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0002206 ! mammillary body property_value: "spatially_disjoint_from" UBERON:0001936 property_value: "spatially_disjoint_from" UBERON:0001939 property_value: "spatially_disjoint_from" UBERON:0001940 [Term] id: UBERON:0001939 name: medial mammillary nucleus namespace: uberon alt_id: UBERON:FMA_62342-MA_0000851 comment: This class was created automatically from a combination of ontologies synonym: "internal mammillary nucleus" EXACT [] synonym: "medial nucleus of mammillary body" EXACT [] synonym: "nucleus mammillaris medialis" EXACT [FMA:62342, FMA:TA] xref: ABA:MM xref: EV:0100238 xref: FMA:62342 xref: MA:0000851 xref: NIF_GrossAnatomy:birnlex_1299 xref: SCTID:369141009 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0002206 ! mammillary body property_value: "spatially_disjoint_from" UBERON:0001936 property_value: "spatially_disjoint_from" UBERON:0001938 property_value: "spatially_disjoint_from" UBERON:0001940 [Term] id: UBERON:0001940 name: supramammillary nucleus namespace: uberon alt_id: UBERON:FMA_62347-MA_0000852 comment: This class was created automatically from a combination of ontologies xref: ABA:SUM xref: FMA:62347 xref: MA:0000852 xref: NIF_GrossAnatomy:birnlex_1479 xref: SCTID:369144001 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0002206 ! mammillary body property_value: "spatially_disjoint_from" UBERON:0001936 property_value: "spatially_disjoint_from" UBERON:0001938 property_value: "spatially_disjoint_from" UBERON:0001939 [Term] id: UBERON:0001941 name: lateral habenular nucleus namespace: uberon alt_id: UBERON:FMA_62372-MA_0000831 comment: This class was created automatically from a combination of ontologies synonym: "lateral habenula" EXACT [] synonym: "nucleus habenulae lateralis" EXACT [NIF_GrossAnatomy:birnlex_1438] synonym: "nucleus habenularis lateralis" EXACT [NIF_GrossAnatomy:birnlex_1438] synonym: "nucleus habenularis lateralis epithalami" EXACT [NIF_GrossAnatomy:birnlex_1438] xref: ABA:LH xref: BM:Die-Epi-Hl xref: BTO:0002699 xref: FMA:62372 xref: MA:0000831 xref: NIF_GrossAnatomy:birnlex_1438 xref: SCTID:361538005 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002757 ! regional part of epithalamus is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001904 ! habenula property_value: "spatially_disjoint_from" UBERON:0001905 property_value: "spatially_disjoint_from" UBERON:0001942 [Term] id: UBERON:0001942 name: medial habenular nucleus namespace: uberon alt_id: UBERON:FMA_62373-MA_0000832 comment: This class was created automatically from a combination of ontologies synonym: "medial habenula" EXACT [] synonym: "nucleus habenulae medialis" EXACT [NIF_GrossAnatomy:birnlex_1431] synonym: "nucleus habenularis medialis" EXACT [NIF_GrossAnatomy:birnlex_1431] synonym: "nucleus habenularis medialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1431] synonym: "nucleus habenularis medialis epithalami" EXACT [NIF_GrossAnatomy:birnlex_1431] xref: ABA:MH xref: BM:Die-Epi-HM xref: BTO:0003686 xref: FMA:62373 xref: MA:0000832 xref: NIF_GrossAnatomy:birnlex_1431 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002757 ! regional part of epithalamus is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001904 ! habenula property_value: "spatially_disjoint_from" UBERON:0001905 property_value: "spatially_disjoint_from" UBERON:0001941 [Term] id: UBERON:0001943 name: midbrain tegmentum namespace: uberon alt_id: UBERON:FMA_62393-MA_0000212-ZFA_0001354 def: "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle.[FMA]" [FMA:FMA, Wikipedia:Midbrain_tegmentum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mesencephalic tegmentum" EXACT [] synonym: "tegmentum" BROAD [] synonym: "tegmentum mesencephali" EXACT [FMA:62393, FMA:TA] synonym: "tegmentum of midbrain" EXACT [] xref: BTO:0003388 xref: EFO:0000921 xref: EHDAA2:0004475 xref: EMAPA:18215 xref: FMA:62393 xref: MA:0000212 xref: MAT:0000452 xref: NIF_GrossAnatomy:birnlex_1200 xref: SCTID:362392007 xref: TAO:0001354 xref: VHOG:0001367 xref: ZFA:0000160 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0001944 name: pretectal region namespace: uberon alt_id: UBERON:FMA_62402-MA_0001062-ZFA_0000418 def: "Region between dorsal thalamus and optic tectum[pub]. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [ISBN10:0471888893, Wikipedia:Pretectum] comment: part of diencephalon in ZFA - modify to adjacent here, supported by pub subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "area pretectalis" EXACT [FMA:62402, FMA:TA] synonym: "nuclei pretectales" EXACT [FMA:62402, FMA:TA] synonym: "pretectal area" EXACT [] synonym: "pretectal nuclei" EXACT [] synonym: "pretectum" EXACT [] xref: ABA:PRT xref: BM:MB-Tec-PT xref: FMA:62402 xref: MA:0001062 xref: NIF_GrossAnatomy:birnlex_703 xref: SCTID:416333003 xref: TAO:0000418 xref: ZFA:0000418 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002966 ! regional part of midbrain tectum is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0002314 ! midbrain tectum relationship: part_of UBERON:0001894 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalon property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0001945 name: superior colliculus namespace: uberon alt_id: UBERON:FMA_62403-MA_0001068-ZFA_0000445 def: "Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of superior colliculus [Wikipedia.org and Neuronames (MM)]." [NIF_GrossAnatomy:birnlex_1040, Wikipedia:Superior_colliculus] comment: The term SC is used when discussing mammals, and OT for other vertebrates[WP]. The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior colliculus" EXACT [] synonym: "anterior corpus quadrigeminum" EXACT [] synonym: "corpora bigemina" RELATED [] synonym: "cranial colliculus" EXACT [] synonym: "dorsal midbrain" RELATED [] synonym: "optic lobe" RELATED [] synonym: "optic tectum" EXACT SENSU [Wikipedia:Superior_colliculus, ZFA:0000445] synonym: "tectal lobe" RELATED [] synonym: "tectum" RELATED [] synonym: "tectum opticum" RELATED [] xref: AAO:0010609 xref: BM:MB-Tec-SC xref: BTO:0000965 xref: EFO:0002474 xref: EV:0100245 xref: FMA:62403 xref: GAID:576 xref: MA:0001068 xref: MESH:A.08.186.211.132.659.237.816 xref: NIF_GrossAnatomy:birnlex_1040 xref: XAO:0003226 xref: ZFA:0000445 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png is_a: UBERON:0002966 ! regional part of midbrain tectum is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0002259 ! corpora quadrigemina [Term] id: UBERON:0001946 name: inferior colliculus namespace: uberon alt_id: UBERON:FMA_62404-MA_0001067 def: "The inferior colliculi together with the superior colliculi form the eminences of the corpora quadrigemina, and also part of the tectal region of the midbrain. The inferior colliculus lies caudal to its counterpart - the superior colliculus - above the trochlear nerve, and at the base of the projection of the medial geniculate nucleus (MGN) and the lateral geniculate nucleus (LGN). The inferior colliculus is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subnuclei. [WP,unvetted]." [Wikipedia:Inferior_colliculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "caudal colliculus" EXACT [] synonym: "inferior colliculi" EXACT PLURAL [EV:0100246] synonym: "posterior colliculus" EXACT [] synonym: "posterior corpus quadrigeminum" EXACT [] xref: ABA:IC xref: EFO:0002465 xref: EV:0100246 xref: FMA:62404 xref: GAID:575 xref: MA:0001067 xref: MESH:A.08.186.211.132.659.237.364 xref: NIF_GrossAnatomy:birnlex_806 is_a: UBERON:0002966 ! regional part of midbrain tectum relationship: part_of UBERON:0002259 ! corpora quadrigemina [Term] id: UBERON:0001947 name: red nucleus namespace: uberon alt_id: UBERON:FMA_62407-MA_0001063 def: "The red nucleus is a structure in the rostral midbrain involved in motor coordination. It comprises a caudal magnocellular and a rostral parvocellular part. [WP,unvetted]." [Wikipedia:Red_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: ABA:RN xref: BM:MB-RN xref: EV:0100248 xref: FMA:62407 xref: GAID:586 xref: MA:0001063 xref: MESH:A.08.186.211.132.659.822.642 xref: NIF_GrossAnatomy:birnlex_1478 xref: SCTID:279287006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0001948 name: regional part of spinal cord namespace: uberon alt_id: UBERON:FMA_62420-ZFA_0001332 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "spinal cord part" RELATED [] synonym: "spinal neuromere" RELATED [] synonym: "spinal neuromeres" RELATED [] xref: NIF_GrossAnatomy:birnlex_1496 xref: SCTID:244437008 xref: ncithesaurus:Spinal_Cord_Part is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0001949 name: gingival epithelium namespace: uberon alt_id: UBERON:FMA_62423-MA_0001576 def: "A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998] synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic] synonym: "epithelium of gingiva" EXACT [] synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic] synonym: "gingiva epithelium" EXACT [OBOL:automatic] xref: BTO:0004998 xref: FMA:62423 xref: MA:0001576 xref: ncithesaurus:Gingival_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0001828 ! gingiva [Term] id: UBERON:0001950 name: neocortex namespace: uberon alt_id: UBERON:FMA_62429-MA_0002754 def: "The neocortex is a part of the brain of mammals. It is the outer layer of the cerebral hemispheres, and made up of six layers, labelled I to VI (with VI being the innermost and I being the outermost). The neocortex is part of the cerebral cortex (along with the archicortex and paleocortex, which are cortical parts of the limbic system). It is involved in higher functions such as sensory perception, generation of motor commands, spatial reasoning, conscious thought and, in humans, language. Other names for the neocortex include neopallium and isocortex ('equal rind'). [WP,unvetted]." [Wikipedia:Neocortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT [] synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547] synonym: "isocortex" EXACT [] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] synonym: "nonolfactory cortex" RELATED [BTO:0000920] xref: ABA:Isocortex xref: BTO:0000920 xref: EHDAA2:0004662 xref: FMA:62429 xref: GAID:677 xref: MA:0002754 xref: MESH:A.08.186.211.730.885.213.420 xref: NIF_GrossAnatomy:birnlex_2547 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex property_value: "spatially_disjoint_from" UBERON:0002264 property_value: "spatially_disjoint_from" UBERON:0002421 [Term] id: UBERON:0001951 name: epithelium of nasopharynx namespace: uberon alt_id: UBERON:0003237 alt_id: UBERON:FMA_62452-MA_0001865 def: "An epithelium that is part of a nasopharynx [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic] synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasopharynx epithelium" EXACT [] synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic] xref: BTO:0004480 xref: EHDAA2:0001241 xref: EHDAA:7090 xref: EMAPA:17672 xref: FMA:62452 xref: MA:0001865 xref: VHOG:0001038 xref: ncithesaurus:Nasopharynx_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0004814 ! upper respiratory tract epithelium relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: UBERON:0001952 name: epithelium of oropharynx namespace: uberon alt_id: UBERON:FMA_62453-MA_0001605 def: "An epithelium that is part of a oropharynx [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "oropharynx epithelium" EXACT [MA:0001605] xref: EHDAA2:0004083 xref: FMA:62453 xref: MA:0001605 xref: ncithesaurus:Oropharynx_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium relationship: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: UBERON:0001953 name: presubiculum namespace: uberon alt_id: UBERON:FMA_62486-MA_0000923 def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [Wikipedia:Brodmann_area_27] comment: This class was created automatically from a combination of ontologies synonym: "Brodmann area 27" EXACT [] synonym: "area 27 of Brodmann" EXACT [] synonym: "presubiculum (cajal)" EXACT [NIF_GrossAnatomy:birnlex_1108] xref: ABA:PRE xref: BM:Tel-Cx-PSB xref: FMA:62486 xref: MA:0000923 xref: NIF_GrossAnatomy:birnlex_1108 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Brodmann_Cytoarchitectonics_27.png/200px-Brodmann_Cytoarchitectonics_27.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0007811 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! craniocervical region property_value: "spatially_disjoint_from" UBERON:0002191 property_value: "spatially_disjoint_from" UBERON:0002728 property_value: "spatially_disjoint_from" UBERON:0004683 [Term] id: UBERON:0001954 name: Ammon's horn namespace: uberon alt_id: UBERON:0003940 alt_id: UBERON:0004165 alt_id: UBERON:FMA_62493-MA_0000191-MIAA_0000114 def: "A paired structure, with mirror-image halves in the left and right sides of the brain. The hippocampus is closely associated with the cerebral cortex, and in primates is located in the medial temporal lobe, underneath the cortical surface. It is shaped like a curved tube[WP]." [Wikipedia:Hippocampus] comment: WP: Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish.[82] The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the \"avian hippocampus\". The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa.[86] One of the consequences of this is that the medial pallium (\"hippocampal\" zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming \"cognitive maps\" of the areas they inhabit.[80] There is evidence that damage to the lateral pallium impairs spatial memory. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Ammon's horn" EXACT [GO:0021541] synonym: "ammon gyrus" EXACT [GO:0021541] synonym: "ammon horn" EXACT [NIF_GrossAnatomy:birnlex_721] synonym: "cornu ammonis" RELATED [GO:0021541] synonym: "hippocampus" RELATED [MA:0000191] synonym: "hippocampus major" EXACT [] synonym: "hippocampus proper" EXACT [] synonym: "hippocampus proprius" EXACT [FMA:62493, FMA:TA] xref: ABA:CA xref: BM:Tel-CAM xref: BTO:0003705 xref: EFO:0000530 xref: EHDAA2:0004443 xref: EMAPA:19039 xref: EMAPA:19148 xref: EV:0100180 xref: FMA:62493 xref: GAID:623 xref: MA:0000191 xref: MAT:0000114 xref: MESH:A.08.186.211.577.405 xref: MIAA:0000114 xref: NIF_GrossAnatomy:birnlex_721 xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA xref: VHOG:0001177 xref: http://scalablebrainatlas.incf.org/services/thumbnail.php?template=ABA07&size=L&dim=2d3d&format=png&region=CA xref: ncithesaurus:Hippocampus is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0002421 ! hippocampal formation relationship: part_of UBERON:0002600 ! limbic lobe property_value: "spatially_disjoint_from" UBERON:0001885 property_value: "spatially_disjoint_from" UBERON:0002601 [Term] id: UBERON:0001955 name: epithelium of respiratory bronchiole namespace: uberon alt_id: UBERON:FMA_62498-MA_0001773 def: "An epithelium that is part of a respiratory bronchiole [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "epithelial tissue of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelium" EXACT [] xref: FMA:62498 xref: MA:0001773 xref: ncithesaurus:Respiratory_Bronchiole_Epithelium is_a: UBERON:0002051 ! epithelium of bronchiole relationship: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0001956 name: cartilage of bronchus namespace: uberon alt_id: UBERON:FMA_62649-MA_0001835 def: "the hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [MP:0010988] synonym: "bronchi cartilage" EXACT [OBOL:automatic] synonym: "bronchial cartilage" EXACT [] synonym: "bronchial cartilage ring" EXACT [MP:0010988] synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic] synonym: "bronchus cartilage" EXACT [] synonym: "cartilage of bronchi" EXACT [OBOL:automatic] synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic] synonym: "cartilagines bronchiales" EXACT PLURAL [] xref: FMA:62649 xref: MA:0001835 xref: SCTID:278980009 xref: ncithesaurus:Bronchus_Cartilage is_a: UBERON:0001994 ! hyaline cartilage is_a: UBERON:0003592 ! bronchus connective tissue is_a: UBERON:0003603 ! lower respiratory tract cartilage [Term] id: UBERON:0001957 name: submucosa of bronchus namespace: uberon alt_id: UBERON:FMA_62653-MA_0001837 def: "A submucosa that is part of a bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchi submucosa" EXACT [OBOL:automatic] synonym: "bronchial submucosa" EXACT [] synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic] synonym: "bronchus submucosa" EXACT [] synonym: "submucosa of bronchi" EXACT [OBOL:automatic] synonym: "submucosa of bronchial trunk" EXACT [OBOL:automatic] xref: BTO:0002108 xref: FMA:62653 xref: MA:0001837 xref: SCTID:85546005 xref: ncithesaurus:Bronchus_Submucosa is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa is_a: UBERON:0003592 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! bronchus connective tissue relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001958 name: epithelium of terminal bronchiole namespace: uberon alt_id: UBERON:FMA_62794-MA_0001774 def: "An epithelium that is part of a terminal bronchiole [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "epithelial tissue of terminal bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "terminal bronchiole epithelium" EXACT [] xref: FMA:62794 xref: MA:0001774 xref: ncithesaurus:Terminal_Bronchiole_Epithelium is_a: UBERON:0002051 ! epithelium of bronchiole relationship: part_of UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0001959 name: white pulp of spleen namespace: uberon alt_id: UBERON:FMA_62805-MA_0000762 def: "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located." [Wikipedia:White_pulp] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pulpa alba" EXACT [FMA:62805, FMA:TA] synonym: "spleen white pulp" EXACT [] synonym: "splenic white pulp" EXACT [] synonym: "white pulp" EXACT [] xref: FMA:62805 xref: MA:0000762 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png xref: ncithesaurus:Splenic_White_Pulp is_a: UBERON:1000023 ! spleen pulp [Term] id: UBERON:0001960 name: periarterial lymphatic sheath namespace: uberon alt_id: UBERON:FMA_62810-MA_0000765 comment: This class was created automatically from a combination of ontologies synonym: "PALS" EXACT [] synonym: "periarterial lymphoid sheath" EXACT [] synonym: "spleen periarteriolar lymphatic sheath" EXACT [] xref: FMA:62810 xref: MA:0000765 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001959 ! white pulp of spleen [Term] id: UBERON:0001961 name: mucosa-associated lymphoid tissue namespace: uberon alt_id: UBERON:FMA_62819-MA_0000140 def: "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "MALT" EXACT [] synonym: "epithelio-lymphoid tissue" EXACT [] synonym: "mucosa associated lymphatic tissue" EXACT [] synonym: "mucosa associated lymphoid tissue" EXACT [] synonym: "mucosa-associated lymphoid tissue" EXACT [GO:0048537] synonym: "mucosal-associated lymphatic tissue" EXACT [GO:0048537] synonym: "mucosal-associated lymphoid tissue" EXACT [GO:0048537] xref: FMA:62819 xref: MA:0000140 xref: ncithesaurus:Mucosa-Associated_Lymphoid_Tissue is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0001962 name: gut-associated lymphoid tissue namespace: uberon alt_id: UBERON:FMA_62820-MA_0000136 def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "GALT" RELATED [] synonym: "gut associated lymphoid tissue" EXACT [] xref: FMA:62820 xref: MA:0000136 xref: ncithesaurus:Gut_Associated_Lymphoid_Tissue is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0001963 name: bronchial-associated lymphoid tissue namespace: uberon alt_id: UBERON:FMA_62821-MA_0000135 comment: This class was created automatically from a combination of ontologies synonym: "BALT" RELATED [] synonym: "bronchus associated lymphoid tissue" EXACT [] xref: FMA:62821 xref: MA:0000135 xref: ncithesaurus:Bronchus-Associated_Lymphoid_Tissue is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue [Term] id: UBERON:0001964 name: least splanchnic nerve namespace: uberon alt_id: UBERON:FMA_6283-MA_0002635 def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and visceral afferent fibers. There are three main thoracic splanchnic nerves: The nerve's origins can be remembered by the '4-3-2 rule', accounting for the number of ganglia giving rise to each nerve. However, different sources define the nerves in different ways, so this rule may not always be reliable. [WP,unvetted]." [Wikipedia:Least_splanchnic_nerve] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "least thoracic splanchnic nerve" EXACT [] synonym: "lowest splanchnic nerve" EXACT [] synonym: "nervus splanchnicus imus" EXACT [FMA:6283, FMA:TA] synonym: "ramus renalis nervus splanchnici minoris" EXACT [FMA:6283, FMA:TA] synonym: "renal branch of lesser splanchnic nerve" EXACT [] synonym: "renal nerve" EXACT [] xref: EMAPA:29691 xref: FMA:6283 xref: MA:0002635 xref: SCTID:280506004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png is_a: UBERON:0001021 ! nerve is_a: UBERON:0003429 ! abdomen nerve is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001965 name: substantia nigra pars compacta namespace: uberon alt_id: UBERON:FMA_62907-MA_0001064 def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)[NIF]." [NIF_GrossAnatomy:birnlex_990, Wikipedia:Substantia_nigra_pars_compacta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "SNpc" EXACT [] synonym: "compact part of substantia nigra" EXACT [] synonym: "pars compacta" EXACT [] synonym: "pars compacta substantiae nigrae" EXACT [FMA:62907, FMA:TA] synonym: "substantia nigra compact part" EXACT [NIF_GrossAnatomy:birnlex_990] synonym: "substantia nigra compacta" EXACT [NIF_GrossAnatomy:birnlex_990] synonym: "substantia nigra, compact part" EXACT [] xref: ABA:SNc xref: BM:MB-SNc xref: BTO:0003749 xref: FMA:62907 xref: MA:0001064 xref: NIF_GrossAnatomy:birnlex_990 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002038 ! substantia nigra property_value: "spatially_disjoint_from" UBERON:0002142 property_value: "spatially_disjoint_from" UBERON:0007412 [Term] id: UBERON:0001966 name: substantia nigra pars reticulata namespace: uberon alt_id: UBERON:FMA_62908-MA_0001066 def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]." [Neurolex:Substantia_nigra_pars_reticulata, Wikipedia:Pars_reticulata] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pars reticularis substantiae nigrae" EXACT [FMA:62908, FMA:TA] synonym: "pars reticulata" EXACT [] synonym: "reticular part of substantia nigra" EXACT [] synonym: "substantia nigra, reticular part" EXACT [] xref: ABA:SNr xref: BM:MB-SNr xref: BTO:0003750 xref: FMA:62908 xref: MA:0001066 xref: NIF_GrossAnatomy:birnlex_968 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002038 ! substantia nigra property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0001967 name: reticular lamina namespace: uberon alt_id: UBERON:FMA_62924-MA_0001194 def: "a thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [Wikipedia:Reticular_lamina, http://mw1.merriam-webster.com/medical/reticular%20lamina] comment: todo - use GO? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fibroreticular lamina" EXACT [] synonym: "lamina fibroreticularis" EXACT [] synonym: "reticular membrane" RELATED [] xref: FMA:62924 is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0005769 ! basement membrane [Term] id: UBERON:0001968 name: semen namespace: uberon alt_id: UBERON:FMA_62966-MA_0002522 alt_id: UBERON:FMA_62967-MA_0002523-MIAA_0000057 alt_id: UBERON:FMA_62969-MA_0002526 def: "Body substance which consists of spermatozoa and seminal plasma.[FMA]" [FMA:FMA, Wikipedia:Semen] comment: Taxon notes: Note that in this ontology, semen is defined as the sum of sperm and seminal fluid, where seminal fluid is defined a taxonomically generic way (see comments for UBERON:0006530). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001230 xref: FMA:62966 xref: GAID:1169 xref: MA:0002522 xref: MESH:A.12.200.732 xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/40/Human_semen_in_petri_dish2.jpg/180px-Human_semen_in_petri_dish2.jpg xref: ncithesaurus:Male_Genital_System_Fluid_or_Secretion xref: ncithesaurus:Semen is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0006536 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! male reproductive system fluid/secretion [Term] id: UBERON:0001969 name: blood plasma namespace: uberon alt_id: UBERON:FMA_62970-MA_0002501-MIAA_0000052 def: "Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood.[FMA]" [FMA:FMA, Wikipedia:Blood_plasma] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "plasma" EXACT [] synonym: "portion of blood plasma" EXACT [] synonym: "portion of plasma" EXACT [] xref: BTO:0000131 xref: EFO:0001905 xref: FMA:62970 xref: GAID:1178 xref: MA:0002501 xref: MAT:0000052 xref: MESH:A.12.207.152.693 xref: MIAA:0000052 xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw xref: ncithesaurus:Plasma is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0000178 ! blood [Term] id: UBERON:0001970 name: bile namespace: uberon alt_id: UBERON:FMA_62971-MA_0002513 def: "a bitter-tasting, dark green to yellowish brown fluid, produced by the liver of most vertebrates, that aids the process of digestion of lipids in the small intestine. In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum. Bile is a composition of the following materials: water (85%), bile salts (10%), mucus and pigments (3%), fats (1%), inorganic salts (0.7%) and cholesterol (0.3%)[WP]." [Wikipedia:Bile] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fel" RELATED [BTO:0000121] synonym: "gall" RELATED [BTO:0000121] xref: BTO:0000121 xref: ENVO:02000023 xref: FMA:62971 xref: GAID:1157 xref: MA:0002513 xref: MESH:A.12.200.087 xref: galen:Bile xref: ncithesaurus:Bile is_a: UBERON:0000456 ! bodily secretion is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0006911 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! digestive system fluid or secretion [Term] id: UBERON:0001971 name: gastric juice namespace: uberon alt_id: UBERON:FMA_62972-MA_0002519 def: "." [Wikipedia:Gastric_juice] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "stomach secretion" EXACT [] synonym: "succus gastricus" RELATED [BTO:0000501] xref: BTO:0000501 xref: FMA:62972 xref: GAID:1160 xref: MA:0002519 xref: MESH:A.12.200.307 xref: galen:GastricJuice is_a: UBERON:0000456 ! bodily secretion is_a: UBERON:0006911 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! digestive system fluid or secretion [Term] id: UBERON:0001972 name: submucosa of esophagus namespace: uberon alt_id: UBERON:FMA_62997-MA_0002724 def: "A submucosa that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "esophageal submucosa" EXACT [] synonym: "esophagus submucosa" EXACT [] synonym: "gullet submucosa" EXACT [OBOL:automatic] synonym: "oesophagus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of esophagus" EXACT [] synonym: "submucosa of gullet" EXACT [OBOL:automatic] synonym: "submucosa of oesophagus" EXACT [OBOL:automatic] synonym: "tela submucosa oesophageae" EXACT [FMA:62997, FMA:TA] xref: BTO:0002109 xref: FMA:62997 xref: MA:0002724 xref: SCTID:362128009 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001973 name: substance of tooth namespace: uberon alt_id: UBERON:FMA_63001-MA_0002540 def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts.[FMA]" [FMA:63001] comment: note the asserted dual parentage. This is deliberate, pending better definitions of the distinction between substance and tissue subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "portion of substance of tooth" EXACT [FMA:63001] synonym: "tooth substance" EXACT [] xref: FMA:63001 xref: MA:0002540 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001974 name: lamina propria of esophagus namespace: uberon alt_id: UBERON:FMA_63050-MA_0001568 def: "A lamina propria that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "esophagus lamina propria" EXACT [] synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "esophagus lamina propria mucosae" EXACT [OBOL:automatic] synonym: "gullet lamina propria" EXACT [OBOL:automatic] synonym: "gullet lamina propria mucosa" EXACT [OBOL:automatic] synonym: "gullet lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of esophagus" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of gullet" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of oesophagus" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of esophagus" EXACT [] synonym: "lamina propria mucosae of gullet" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of oesophagus" EXACT [OBOL:automatic] synonym: "lamina propria of gullet" EXACT [OBOL:automatic] synonym: "lamina propria of oesophagus" EXACT [OBOL:automatic] synonym: "oesophagus lamina propria" RELATED [] synonym: "oesophagus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "oesophagus lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:26987 xref: EMAPA:27003 xref: FMA:63050 xref: MA:0001568 xref: ncithesaurus:Esophageal_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004780 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system lamina propria relationship: part_of UBERON:0002469 ! esophagus mucosa [Term] id: UBERON:0001975 name: serosa of esophagus namespace: uberon alt_id: UBERON:FMA_63057-MA_0001571 def: "A serous membrane that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "esophagus serosa" EXACT [] synonym: "esophagus serous membrane" EXACT [OBOL:automatic] synonym: "gullet serosa" EXACT [OBOL:automatic] synonym: "gullet serous membrane" EXACT [OBOL:automatic] synonym: "oesophagus serosa" RELATED [] synonym: "oesophagus serous membrane" EXACT [OBOL:automatic] synonym: "serosa of abdominal part of esophagus" EXACT [] synonym: "serosa of gullet" EXACT [OBOL:automatic] synonym: "serosa of oesophagus" EXACT [] synonym: "serous coat of oesophagus" EXACT [] synonym: "serous membrane of esophagus" EXACT [OBOL:automatic] synonym: "serous membrane of gullet" EXACT [OBOL:automatic] synonym: "serous membrane of oesophagus" EXACT [OBOL:automatic] synonym: "tunica serosa oesophageae" EXACT [FMA:63057, FMA:TA] xref: FMA:63057 xref: MA:0001571 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004782 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system serosa relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001976 name: epithelium of esophagus namespace: uberon alt_id: UBERON:FMA_63063-MA_0001565-ZFA_0001499 comment: todo check epithelium types: in FMA: Nonkeratinizing stratified squamous epithelium; mouse has basal and squamous subtypes; in ZFA it is columnar subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "epithelial tissue of esophagus" EXACT [OBOL:automatic] synonym: "epithelial tissue of gullet" EXACT [OBOL:automatic] synonym: "epithelial tissue of oesophagus" EXACT [OBOL:automatic] synonym: "epithelium of gullet" EXACT [OBOL:automatic] synonym: "epithelium of oesophagus" EXACT [OBOL:automatic] synonym: "esophageal epithelium" EXACT [] synonym: "esophagus epithelial tissue" EXACT [OBOL:automatic] synonym: "esophagus epithelium" EXACT [] synonym: "gullet epithelial tissue" EXACT [OBOL:automatic] synonym: "gullet epithelium" EXACT [OBOL:automatic] synonym: "oesophagus epithelial tissue" EXACT [OBOL:automatic] synonym: "oesophagus epithelium" RELATED [] xref: BTO:0001578 xref: EFO:0003041 xref: EHDAA2:0001287 xref: EMAPA:16835 xref: FMA:63063 xref: MA:0001565 xref: TAO:0001499 xref: ZFA:0001499 xref: ncithesaurus:Esophageal_Epithelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0000485 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! simple columnar epithelium is_a: UBERON:0004808 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system epithelium relationship: part_of UBERON:0002469 ! esophagus mucosa [Term] id: UBERON:0001977 name: serum namespace: uberon alt_id: UBERON:FMA_63083-MA_0002502 def: "Body substance derived from plasma by the elimination of fibrinogen.[FMA]" [FMA:FMA, Wikipedia:Serum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "blood serum" EXACT [] xref: BTO:0000133 xref: BTO:0001239 xref: FMA:63083 xref: MA:0002502 xref: ncithesaurus:Serum is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001969 ! blood plasma [Term] id: UBERON:0001978 name: parenchyma of pancreas namespace: uberon alt_id: UBERON:FMA_63120-MA_0000724 comment: This class was created automatically from a combination of ontologies synonym: "pancreas parenchyma" EXACT [] synonym: "pancreatic parenchyma" EXACT [] xref: FMA:63120 xref: MA:0000724 xref: SCTID:371401008 xref: VHOG:0001430 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001979 name: venule namespace: uberon alt_id: UBERON:FMA_63130-MA_0000071 def: "Subdivision of venous tree (organ) which is directly continuous with the capillary vessel." [Wikipedia:Venule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: BTO:0002626 xref: FMA:63130 xref: MA:0000071 xref: MESH:A.07.231.432.952 xref: SCTID:341687009 xref: ZFA:0005315 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg xref: ncithesaurus:Venule is_a: UBERON:0003920 ! venous blood vessel relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001980 name: arteriole namespace: uberon alt_id: UBERON:FMA_63182-MA_0000063 def: "the smallest division of the artery located between the muscular arteries and the capillaries[GO]. Subdivision of arterial tree (organ) which is directly continuous with capillary vessel[FMA]." [FMA:63182, GO:0014830, Wikipedia:Arteriole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010253 xref: BTO:0001997 xref: FMA:63182 xref: MA:0000063 xref: MESH:A.07.231.114.060 xref: SCTID:337724002 xref: ZFA:0005255 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg xref: ncithesaurus:Arteriole is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003509 ! arterial blood vessel relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0001981 name: blood vessel namespace: uberon alt_id: UBERON:FMA_63183-XAO_0001011 def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] comment: note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "region of vascular tree organ" EXACT [FMA:50722] synonym: "vascular tree organ region" EXACT [FMA:50722] xref: AAO:0011004 xref: AEO:0000207 xref: BTO:0001102 xref: EFO:0000817 xref: EHDAA2:0003252 xref: EHDAA:240 xref: FMA:50722 xref: FMA:63183 xref: GAID:169 xref: MA:0000060 xref: MAT:0000393 xref: MESH:A.07.231 xref: NIF_GrossAnatomy:nlx_anat_090901 xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA xref: SCTID:361097006 xref: VHOG:0001250 xref: XAO:0001011 xref: ZFA:0005314 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png xref: ncithesaurus:Blood_Vessel is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007500 ! epithelial tube open at both ends relationship: part_of UBERON:0004537 ! blood vasculature [Term] id: UBERON:0001982 name: capillary namespace: uberon alt_id: UBERON:FMA_63194-MA_0000065-XAO_0000116 def: "Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "blood capillary" EXACT [] synonym: "capillary vessel" EXACT [] xref: AAO:0010252 xref: BTO:0002045 xref: EFO:0001906 xref: EMAPA:28039 xref: EMAPA:28075 xref: EV:0100035 xref: FMA:63194 xref: MA:0000065 xref: MESH:A.07.231.432.410 xref: NIF_GrossAnatomy:nlx_anat_090902 xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA xref: VHOG:0001253 xref: XAO:0000116 xref: ZFA:0005250 xref: ncithesaurus:Capillary is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0001983 name: crypt of lieberkuhn namespace: uberon alt_id: UBERON:FMA_63621-MA_0001535 def: "A gland found in the epithelial lining of the small intestine and colon." [Wikipedia:Crypts_of_Lieberkuhn] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "intestinal gland" BROAD [Wikipedia:Crypts_of_Lieberkuhn] synonym: "lieberkuhn crypt" EXACT [] xref: FMA:63621 xref: MA:0001535 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg xref: ncithesaurus:Crypts_of_the_Lieberkuhn is_a: UBERON:0000333 ! intestinal gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001984 name: crypt of lieberkuhn of large intestine namespace: uberon alt_id: UBERON:FMA_63622-MA_0001544 def: "A crypt of lieberkuhn that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "intestinal gland of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal crypt of lieberkuhn" EXACT [] synonym: "large intestine crypt of lieberkuhn" EXACT [] synonym: "large intestine intestinal gland" EXACT [OBOL:automatic] synonym: "large intestine lieberkuhn crypt" EXACT [OBOL:automatic] synonym: "lieberkuhn crypt of large intestine" EXACT [OBOL:automatic] xref: FMA:63622 xref: MA:0001544 xref: ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn is_a: UBERON:0001983 ! crypt of lieberkuhn relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001985 name: corneal endothelium namespace: uberon alt_id: UBERON:FMA_63882-MA_0001242 def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cornea endothelium" EXACT [OBOL:automatic] synonym: "endothelium of cornea" EXACT [OBOL:automatic] xref: FMA:63882 xref: GAID:891 xref: MA:0001242 xref: MESH:A.09.371.060.067.318 xref: SCTID:368827009 xref: ZFA:0001687 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png xref: ncithesaurus:Corneal_Endothelium is_a: UBERON:0001772 ! corneal epithelium is_a: UBERON:0001986 ! endothelium [Term] id: UBERON:0001986 name: endothelium namespace: uberon alt_id: UBERON:FMA_63916-ZFA_0001639 def: "A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA]" [FMA:63916, MESH:A.10.272.491] comment: The term bbendotheliumbb has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000393 xref: EFO:0002548 xref: EMAPA:18578 xref: EMAPA:19063 xref: FMA:63916 xref: GAID:520 xref: MESH:A.10.272.491 xref: SCTID:27168002 xref: galen:Endothelium xref: ncithesaurus:Endothelium is_a: UBERON:0000487 ! simple squamous epithelium [Term] id: UBERON:0001987 name: placenta namespace: uberon alt_id: UBERON:FMA_63934-MA_0000386-MIAA_0000279 def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell." [Wikipedia:Placenta, http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] comment: Taxon notes: Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN10:0073040584 \"Vertebrates, Kardong\"]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: doi:10.1002/jmor.11011 subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "allantoic placenta" EXACT [ISBN10:0073040584] synonym: "eutherian placenta" EXACT [] xref: BTO:0001078 xref: EFO:0001407 xref: EV:0100119 xref: FMA:63934 xref: GAID:379 xref: MA:0000386 xref: MAT:0000279 xref: MESH:A.16.759 xref: MIAA:0000279 xref: OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA xref: SCTID:181455002 xref: VHOG:0001266 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Placenta.jpg/200px-Placenta.jpg xref: ncithesaurus:Placenta is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0001988 name: feces namespace: uberon alt_id: UBERON:FMA_64183-MA_0002509-MIAA_0000053 def: "Excretion in semisolid state processed by the intestine.[FMA]" [FMA:FMA, Wikipedia:Feces] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "excrement" RELATED [BTO:0000440] synonym: "faeces" EXACT [] synonym: "fecal matter" EXACT [] synonym: "stool" EXACT [] xref: BTO:0000440 xref: ENVO:00002003 xref: FMA:64183 xref: GAID:1199 xref: MA:0002509 xref: MAT:0000053 xref: MESH:A.12.459 xref: MIAA:0000053 xref: OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA xref: galen:Feces xref: ncithesaurus:Feces is_a: UBERON:0000174 ! excreta [Term] id: UBERON:0001989 name: superior cervical ganglion namespace: uberon alt_id: UBERON:FMA_6467-MA_0001156-ZFA_0001572 def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ganglion cervicale superius" RELATED [BTO:0001325] synonym: "superior cervical sympathetic ganglion" EXACT [] synonym: "superior sympathetic cervical ganglion" RELATED [] xref: BTO:0001325 xref: EFO:0001945 xref: EHDAA:8943 xref: EMAPA:18441 xref: FMA:6467 xref: GAID:712 xref: MA:0001156 xref: MESH:A.08.340.315.350.850 xref: RETIRED_EHDAA2:0001946 xref: SCTID:279278002 xref: TAO:0001572 xref: ZFA:0001572 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0001990 name: middle cervical ganglion namespace: uberon alt_id: UBERON:FMA_6468-MA_0001155 def: "The middle cervical ganglion is the smallest of the three cervical ganglia, and is occasionally absent. It is placed opposite the sixth cervical vertebra, usually in front of, or close to, the inferior thyroid artery. It is probably formed by the coalescence of two ganglia corresponding to the fifth and sixth cervical nerves. It sends gray rami communicantes to the fifth and sixth cervical nerves, and gives off the middle cardiac nerve. [WP,unvetted]." [Wikipedia:Middle_cervical_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ganglion cervicale medium" RELATED [BTO:0000359] synonym: "middle cervical sympathetic ganglion" EXACT [] xref: BTO:0000359 xref: EHDAA:8941 xref: EMAPA:18440 xref: FMA:6468 xref: MA:0001155 xref: RETIRED_EHDAA2:0001180 xref: SCTID:279279005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0001991 name: cervical ganglion namespace: uberon alt_id: UBERON:FMA_6470-MA_0001153 def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]." [Wikipedia:Cervical_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cervical sympathetic ganglion" EXACT [] xref: BTO:0000113 xref: EMAPA:18438 xref: FMA:6470 xref: MA:0001153 xref: SCTID:181100007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png is_a: UBERON:0001807 ! paravertebral ganglion [Term] id: UBERON:0001992 name: papillary layer of dermis namespace: uberon alt_id: UBERON:FMA_64776-MA_0000800 def: "Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA]" [FMA:FMA, Wikipedia:Papillary_dermis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dermis papillary layer" EXACT [] synonym: "papillary dermis" EXACT [] xref: FMA:64776 xref: MA:0000800 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0001993 name: reticular layer of dermis namespace: uberon alt_id: UBERON:FMA_64778-MA_0000801 def: "Dense irregular connective tissue that consists of elastic fibers and collagen, predominantly type I.[FMA]" [FMA:FMA, Wikipedia:Reticular_dermis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dermis reticular layer" EXACT [] synonym: "reticular dermis" EXACT [] xref: FMA:64778 xref: MA:0000801 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0001994 name: hyaline cartilage namespace: uberon alt_id: UBERON:FMA_64783-MA_0000109 def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium." [Wikipedia:Hyaline_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hyaline cartilage tissue" EXACT [] xref: FMA:64783 xref: MA:0000109 xref: SCTID:39298000 xref: VAO:0000094 xref: XAO:0004029 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray292.png/200px-Gray292.png xref: ncithesaurus:Hyaline_Cartilage is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0001995 name: fibrocartilage namespace: uberon alt_id: UBERON:FMA_64784-MA_0000108 def: "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns[VAO]. A mixture of white fibrous tissue and cartilaginous tissue in various proportions. It owes its flexibility and toughness to the former of these constituents, and its elasticity to the latter. It is the only type of cartilage that contains type I collagen in addition to the normal type II[WP]. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium[FMA]." [FMA:64784, VAO:0000103, Wikipedia:Fibrocartilage] comment: The white fibrocartilages admit of arrangement into four groupsbinterarticular, connecting, circumferential, and stratiform -- WP. TODO: add mineralized subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:64784 xref: MA:0000108 xref: SCTID:91685003 xref: VAO:0000103 xref: XAO:0004028 xref: galen:Fibrocartilage xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray295.png/200px-Gray295.png xref: ncithesaurus:Fibrocartilage is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0001996 name: elastic cartilage namespace: uberon alt_id: UBERON:FMA_64785-MA_0000107 def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers." [FMA:64785, Wikipedia:Elastic_cartilage] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "elastic cartilage tissue" EXACT [VAO:0000091] synonym: "yellow elastic cartilage" EXACT [Wikipedia:Elastic_cartilage] xref: FMA:64785 xref: MA:0000107 xref: VAO:0000091 xref: XAO:0004197 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray904.png/200px-Gray904.png xref: ncithesaurus:Elastic_Cartilage is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0001994 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hyaline cartilage [Term] id: UBERON:0001997 name: olfactory epithelium namespace: uberon alt_id: UBERON:0004853 alt_id: UBERON:FMA_64803-ZFA_0000554 def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [Wikipedia:Olfactory_epithelium, ZFIN:curator] comment: Genes: V1Rs, Trpc2 present in lamprey // See also: FMA:77199 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325] synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] synonym: "olfactory membrane" EXACT [NIF_GrossAnatomy:birnlex_2703] synonym: "olfactory mucosa" RELATED [GAID:303] synonym: "olfactory sensory epithelium" EXACT [] synonym: "sensory olfactory epithelium" EXACT [] xref: AAO:0010158 xref: BTO:0000108 xref: EFO:0001972 xref: EHDAA2:0001228 xref: EHDAA:4774 xref: EMAPA:17606 xref: FMA:64803 xref: MA:0001325 xref: MAT:0000445 xref: NIF_GrossAnatomy:birnlex_2703 xref: SCTID:37623003 xref: TAO:0000554 xref: VHOG:0000985 xref: ZFA:0000554 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray857.png/200px-Gray857.png xref: ncithesaurus:Olfactory_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0005384 ! nasal cavity epithelium is_a: UBERON:0006934 ! sensory epithelium relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0001826 ! nasal cavity mucosa [Term] id: UBERON:0001998 name: sternocostal joint namespace: uberon alt_id: UBERON:FMA_64877-MA_0001512 def: "arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation." [Wikipedia:Sternocostal_joints] comment: This class was created automatically from a combination of ontologies synonym: "articulatio sternocostalis" EXACT [FMA:7954] synonym: "sternochondral joint" EXACT [] synonym: "sternocostal synovial joint" EXACT [FMA:7954] synonym: "synovial sternocostal joint" EXACT [FMA:7954] xref: FMA:7954 xref: GAID:271 xref: MA:0001512 xref: MESH:A.02.835.583.790 xref: SCTID:361860002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png xref: ncithesaurus:Sternocostal_Joint is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0001999 name: iliopsoas namespace: uberon alt_id: UBERON:FMA_64918-MA_0002321 def: "Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]." [Wikipedia:Iliopsoas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Hyrtl's muscle" EXACT [] synonym: "iliopsoas muscle" EXACT [BTO:0000621] xref: BTO:0000621 xref: EHDAA2:0000812 xref: EHDAA:9458 xref: EMAPA:18520 xref: FMA:64918 xref: MA:0002321 xref: SCTID:181668001 xref: VHOG:0001005 xref: ncithesaurus:Iliopsoas_Muscle is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! muscle organ [Term] id: UBERON:0002000 name: gluteal muscle namespace: uberon alt_id: UBERON:FMA_64922-MA_0000535 def: "." [Wikipedia:Gluteal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gluteus" RELATED [BTO:0000531] synonym: "gluteus muscle" RELATED [] xref: BTO:0000531 xref: FMA:64922 xref: MA:0000535 xref: ncithesaurus:Gluteal_Muscle is_a: UBERON:0001497 ! muscle of pelvic girdle is_a: UBERON:0001325 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! muscle of pelvis [Term] id: UBERON:0002001 name: joint of rib namespace: uberon alt_id: UBERON:FMA_64994-MA_0001508 def: "A skeletal joint that is part of a rib [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "rib joint" EXACT [] xref: FMA:64994 xref: MA:0001508 xref: SCTID:263314001 xref: ncithesaurus:Joint_of_the_Rib is_a: UBERON:0000982 ! skeletal joint is_a: UBERON:0005174 ! back organ is_a: UBERON:0005175 ! chest organ [Term] id: UBERON:0002002 name: interchondral joint namespace: uberon alt_id: UBERON:FMA_64996-MA_0001511 def: "contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets." [Wikipedia:Interchondral_joints] comment: This class was created automatically from a combination of ontologies synonym: "articulatio interchondralis" EXACT [FMA:7955] synonym: "articulationes interchondrales" EXACT [FMA:71378, FMA:TA] synonym: "interchondral joints" EXACT [FMA:71378] synonym: "interchondral joints set" EXACT [FMA:71378] synonym: "synovial interchondral joint" EXACT [FMA:7955] xref: FMA:64996 xref: FMA:71378 xref: FMA:7955 xref: MA:0001511 xref: SCTID:303101003 is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002003 name: peripheral nerve namespace: uberon alt_id: UBERON:0003377 alt_id: UBERON:FMA_65239-MA_0000228-XAO_0000204 def: "Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]." [Wikipedia:Peripheral_nerve] comment: TODO - check definition vs nerve subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nerve part of peripheral nervous system" EXACT [NIF_GrossAnatomy:birnlex_1615] synonym: "peripheral nerve tree" EXACT [] xref: BTO:0001027 xref: EMAPA:25148 xref: EV:0100371 xref: FMA:65239 xref: GAID:747 xref: MA:0000228 xref: MESH:A.08.800.800 xref: NIF_GrossAnatomy:birnlex_1615 xref: SCTID:244457007 xref: VHOG:0000901 xref: XAO:0000204 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png xref: ncithesaurus:Peripheral_Nerve is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0002004 name: trunk of sciatic nerve namespace: uberon alt_id: UBERON:FMA_65507-MA_0001178 comment: This class was created automatically from a combination of ontologies synonym: "sciatic nerve trunk" EXACT [] synonym: "sciatic neural trunk" EXACT [] xref: FMA:65507 xref: MA:0001178 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002005 name: enteric nervous system namespace: uberon alt_id: UBERON:FMA_66070-MA_0000222-MIAA_0000102-ZFA_0001155 def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [Wikipedia:Enteric_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "PNS - enteric" EXACT [] xref: BTO:0002506 xref: EFO:0000895 xref: EHDAA2:0004202 xref: EMAPA:26922 xref: FMA:66070 xref: GAID:799 xref: MA:0000222 xref: MAT:0000102 xref: MESH:A.08.800.050.150 xref: MIAA:0000102 xref: NIF_GrossAnatomy:birnlex_1166 xref: TAO:0001155 xref: ZFA:0001155 is_a: UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system relationship: develops_from UBERON:0006600 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive enteric nervous system relationship: part_of UBERON:0001555 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! digestive tract [Term] id: UBERON:0002006 name: cortex of lymph node namespace: uberon alt_id: UBERON:FMA_66253-MA_0000740 def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [Wikipedia:Cortex_of_lymph_node] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lymph node cortex" EXACT [] xref: FMA:66253 xref: MA:0000740 xref: ncithesaurus:Lymph_Node_Cortex is_a: UBERON:0001851 ! cortex relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002007 name: medulla of lymph node namespace: uberon alt_id: UBERON:FMA_66254-MA_0000745 def: "." [Wikipedia:Medulla_of_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lymph node medulla" EXACT [] xref: FMA:66254 xref: MA:0000745 is_a: UBERON:0000958 ! medulla relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002008 name: cardiac nerve plexus namespace: uberon alt_id: UBERON:FMA_6628-MA_0001138 def: "a plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "autonomic nerve plexus of heart" EXACT [OBOL:automatic] synonym: "autonomic plexus of heart" EXACT [OBOL:automatic] synonym: "cardiac plexus" EXACT [] synonym: "heart autonomic nerve plexus" EXACT [OBOL:automatic] synonym: "heart autonomic plexus" EXACT [OBOL:automatic] synonym: "heart visceral nerve plexus" EXACT [OBOL:automatic] synonym: "heart visceral plexus" EXACT [OBOL:automatic] synonym: "plexus cardiacus" EXACT [FMA:6628, FMA:TA] synonym: "visceral nerve plexus of heart" EXACT [OBOL:automatic] synonym: "visceral plexus of heart" EXACT [OBOL:automatic] xref: FMA:6628 xref: MA:0001138 xref: SCTID:280511002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: ncithesaurus:Cardiac_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0002009 name: pulmonary nerve plexus namespace: uberon alt_id: UBERON:FMA_6629-MA_0001143 def: "The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk. It supplies the Bronchial tree. [WP,unvetted]." [Wikipedia:Pulmonary_plexus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "plexus pulmonalis" EXACT [FMA:6629, FMA:TA] synonym: "pulmonary plexus" EXACT [FMA:6629] xref: FMA:6629 xref: MA:0001143 xref: SCTID:280512009 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0003728 ! mediastinum [Term] id: UBERON:0002010 name: celiac nerve plexus namespace: uberon alt_id: UBERON:FMA_6630-MA_0001139 def: "The celiac plexus, also known as the solar plexus, is a complex network of nerves located in the abdomen. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]." [Wikipedia:Celiac_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "celiac plexus" EXACT [] synonym: "coeliac nerve plexus" RELATED [] synonym: "coeliac plexus" EXACT [] synonym: "plexus coeliacus" EXACT [FMA:6630, FMA:TA] synonym: "plexus nervosus coeliacus" EXACT [FMA:6630, FMA:TA] xref: FMA:6630 xref: GAID:796 xref: MA:0001139 xref: MESH:A.08.800.050.050.150 xref: SCTID:362494009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0002011 name: thoracodorsal artery namespace: uberon alt_id: UBERON:FMA_66320-MA_0002065 def: "The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]." [Wikipedia:Thoracodorsal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:66320 xref: MA:0002065 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png xref: ncithesaurus:Thoracodorsal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002012 name: pulmonary artery namespace: uberon alt_id: UBERON:FMA_66326-MA_0002031 def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Pulmonary_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pulmonary arterial tree" EXACT [] synonym: "pulmonary arterial tree organ part" EXACT [] xref: AAO:0010221 xref: BTO:0000778 xref: EFO:0001399 xref: EHDAA2:0001575 xref: EHDAA:4351 xref: EMAPA:17008 xref: FMA:66326 xref: GAID:505 xref: MA:0002031 xref: MESH:A.07.231.114.715 xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA xref: SCTID:181380003 xref: VHOG:0000982 xref: XAO:0004162 xref: galen:PulmonaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: ncithesaurus:Pulmonary_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0003123 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! aortic arch 6 [Term] id: UBERON:0002013 name: superior hypogastric nerve plexus namespace: uberon alt_id: UBERON:FMA_6642-MA_0001142 def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus] comment: Check relationship with generic hypogastric nerve/plexus subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hypogastric plexus" RELATED [] synonym: "nervus presacralis" EXACT [FMA:6642, FMA:TA] synonym: "plexus hypogastricus superior" EXACT [FMA:6642, FMA:TA] synonym: "presacral nerve" EXACT [] synonym: "superior hypogastric plexus" EXACT [] xref: EMAPA:19274 xref: FMA:6642 xref: MA:0001142 xref: SCTID:244484008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0005303 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hypogastric nerve [Term] id: UBERON:0002014 name: inferior hypogastric nerve plexus namespace: uberon alt_id: UBERON:FMA_6643-MA_0001141 def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus] comment: Check relationship with generic hypogastric nerve/plexus subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior hypogastric plexus" EXACT [] synonym: "pelvic nerve plexus" EXACT [] synonym: "pelvic plexus" EXACT [] synonym: "plexus hypogastricus inferior" EXACT [FMA:6643, FMA:TA] synonym: "plexus nervosus pelvicus" EXACT [FMA:6643, FMA:TA] synonym: "plexus pelvicus" EXACT [FMA:6643, FMA:TA] xref: EMAPA:19275 xref: FMA:6643 xref: MA:0001141 xref: SCTID:192608000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: ncithesaurus:Inferior_Hypogastric_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0005303 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hypogastric nerve [Term] id: UBERON:0002015 name: kidney capsule namespace: uberon alt_id: UBERON:FMA_66610-MA_0000370 def: "The renal capsule is a tough fibrous layer surrounding the kidney and covered in a thick layer of ' adipose tissue. It provides some protection from trauma and damage. The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly). [WP,unvetted]." [Wikipedia:Kidney_capsule] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "capsule of kidney" EXACT [] synonym: "fibrous capsule of kidney" EXACT [FMA:66610] synonym: "renal capsule" EXACT [GO:0072127] xref: EMAPA:18679 xref: FMA:66610 xref: MA:0000370 xref: SCTID:243657006 xref: galen:CapsuleOfKidney xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg xref: ncithesaurus:Renal_Capsule is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0002016 name: pulmonary vein namespace: uberon alt_id: UBERON:FMA_66643-MA_0002206-XAO_0000394 def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [Wikipedia:Pulmonary_vein] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pulmonary venous tree organ part" EXACT [] xref: AAO:0010521 xref: BTO:0001799 xref: EHDAA2:0001579 xref: EHDAA:2629 xref: EMAPA:18645 xref: FMA:66643 xref: GAID:543 xref: MA:0002206 xref: MESH:A.07.231.908.713 xref: VHOG:0001133 xref: XAO:0000394 xref: galen:PulmonaryVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: ncithesaurus:Pulmonary_Vein is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001638 ! vein is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0001919 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endothelium of vein [Term] id: UBERON:0002017 name: portal vein namespace: uberon alt_id: UBERON:FMA_66645-MA_0002198-XAO_0000392 def: "A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]." [BTO:0001792] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "portal venous tree organ part" EXACT [FMA:66645] xref: BTO:0001792 xref: EHDAA2:0001485 xref: EHDAA:6510 xref: EMAPA:17349 xref: FMA:66645 xref: GAID:540 xref: MA:0002198 xref: MESH:A.07.231.908.670.567 xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA xref: SCTID:362064007 xref: VHOG:0000656 xref: XAO:0000392 xref: galen:PortalVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: ncithesaurus:Portal_Vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0005806 ! portal system relationship: develops_from UBERON:0001919 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endothelium of vein [Term] id: UBERON:0002018 name: synovial membrane namespace: uberon alt_id: UBERON:FMA_66762-MA_0000114 def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "membrana synovialis capsulae articularis" RELATED [GAID:264] synonym: "stratum synoviale" EXACT [FMA:66762, FMA:TA] synonym: "synovial layer" EXACT [FMA:66762] synonym: "synovial sheath" RELATED [FMA:General_anatomical_term] synonym: "synovium" EXACT [BTO:0001823, VHOG:0001282] xref: AEO:0000181 xref: BTO:0001823 xref: EFO:0001393 xref: EHDAA2:0003181 xref: EV:0100143 xref: FMA:66762 xref: GAID:264 xref: MA:0000114 xref: MESH:A.02.835.583.443.800 xref: SCTID:361828005 xref: VHOG:0001282 xref: galen:SynovialMembrane xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Synovium.png/200px-Synovium.png xref: ncithesaurus:Synovial_Membrane is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0006915 ! stratified squamous epithelium relationship: part_of UBERON:0002217 ! synovial joint relationship: part_of UBERON:0007616 ! synovial tissue [Term] id: UBERON:0002019 name: spinal accessory nerve namespace: uberon alt_id: UBERON:FMA_6720-MA_0001088 def: "In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve[GO]." [Wikipedia:Spinal_accessory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Accessory nerve [XI]" EXACT [] synonym: "Willis' nerve" EXACT [] synonym: "accessory XI" EXACT [EHDAA2:0000106] synonym: "accessory XI nerve" EXACT [] synonym: "accessory nerve" EXACT [] synonym: "cervical accessory nerve" EXACT [] synonym: "cranial nerve XI" EXACT [NIF_GrossAnatomy:birnlex_812] synonym: "eleventh cranial nerve" EXACT [NIF_GrossAnatomy:birnlex_812] synonym: "nervus accessorius [xi]" EXACT [FMA:6720, FMA:TA] synonym: "pars spinalis nervus accessorius" EXACT [FMA:6720, FMA:TA] synonym: "spinal accessory nerve tree" EXACT [] synonym: "spinal part of accessory nerve" EXACT [] xref: AAO:0010476 xref: EHDAA2:0000106 xref: EHDAA:2855 xref: EMAPA:17159 xref: EMAPA:17265 xref: FMA:6720 xref: GAID:825 xref: MA:0001088 xref: MESH:A.08.800.800.120.060 xref: NIF_GrossAnatomy:birnlex_812 xref: OpenCyc:Mx4rwTEwI5wpEbGdrcN5Y29ycA xref: SCTID:362469008 xref: VHOG:0000699 xref: XAO:0004214 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png xref: ncithesaurus:Accessory_Nerve is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0002020 name: gray matter of neuraxis namespace: uberon alt_id: UBERON:FMA_67242-MA_0001112 def: "Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "gray mater" RELATED [ZFA:0001681] synonym: "gray matter" EXACT [] synonym: "grey matter" EXACT [] synonym: "grey substance" EXACT [] synonym: "neuronal grey matter" EXACT [EHDAA2:0004658] synonym: "substantia grisea" EXACT [FMA:67242, FMA:TA] xref: AEO:0000136 xref: EHDAA2:0003136 xref: EHDAA2:0004658 xref: FMA:67242 xref: MA:0001112 xref: OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA xref: ZFA:0001681 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: ncithesaurus:Gray_Matter is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002021 name: occipital lobe namespace: uberon alt_id: UBERON:FMA_67325-MA_0000913-ZFA_0001414 def: "Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure." [Wikipedia:Occipital_lobe] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "occipital cortex" EXACT [] synonym: "occipital neocortex" EXACT [DHB:Ocx] synonym: "regio occipitalis" EXACT [FMA:67325, FMA:TA] xref: BTO:0000293 xref: EFO:0000915 xref: EV:0100170 xref: FMA:67325 xref: GAID:678 xref: MA:0000913 xref: MAT:0000507 xref: MESH:A.08.186.211.730.885.213.571 xref: NIF_GrossAnatomy:birnlex_1136 xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA xref: SCTID:180923002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray727_occipital_lobe.png/200px-Gray727_occipital_lobe.png xref: ncithesaurus:Occipital_Lobe is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002022 name: insula namespace: uberon alt_id: UBERON:FMA_67329-MA_0000909 def: "The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes." [Wikipedia:Insula] comment: AO notes: two classes in ncit, Central_Lobe is part of temporal lobe subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central lobe" EXACT [FMA:67329] synonym: "cortex of island" EXACT [FMA:67329] synonym: "insula lobule" EXACT [FMA:67329] synonym: "insular cortex" EXACT [FMA:67329, NIF_GrossAnatomy:birnlex_1117] synonym: "insular lobe" EXACT [FMA:67329] synonym: "insular region" EXACT [FMA:67329] synonym: "insulary cortex" RELATED [BTO:0001105] synonym: "island of Reil" EXACT [FMA:67329] synonym: "lobus insularis" EXACT [FMA:67329, FMA:TA] xref: BM:Tel-Cx-Ins xref: BTO:0001105 xref: EV:0100172 xref: FMA:67329 xref: MA:0000909 xref: NIF_GrossAnatomy:birnlex_1117 xref: OpenCyc:Mx4rvpK5WZwpEbGdrcN5Y29ycA xref: SCTID:279201009 xref: ncithesaurus:Central_Lobe xref: ncithesaurus:Insula is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002023 name: claustrum namespace: uberon alt_id: UBERON:FMA_67440-MA_0000888 def: "one of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]." [BTO:0004292, Wikipedia:Claustrum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal claustrum" EXACT [FMA:67440] synonym: "dorsal portion of claustrum" EXACT [FMA:67440] xref: ABA:CLA xref: BM:Tel-Cl xref: BTO:0004292 xref: EV:0100183 xref: FMA:67440 xref: MA:0000888 xref: NIF_GrossAnatomy:birnlex_1522 xref: SCTID:279410004 xref: ncithesaurus:Claustrum is_a: UBERON:0002420 ! basal ganglion relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 ! basal ganglion disjoint_from: UBERON:0002729 ! claustral amygdaloid area property_value: "spatially_disjoint_from" UBERON:0002887 property_value: "spatially_disjoint_from" UBERON:0006107 [Term] id: UBERON:0002024 name: internal carotid nerve plexus namespace: uberon alt_id: UBERON:FMA_67533-MA_0001162 def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "internal carotid plexus" EXACT [] synonym: "plexus caroticus internus" EXACT [FMA:67533, FMA:TA] xref: FMA:67533 xref: MA:0001162 xref: SCTID:280509006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray840.png/200px-Gray840.png xref: ncithesaurus:Internal_Carotid_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0002025 name: stratum basale of epidermis namespace: uberon alt_id: UBERON:FMA_67540-MA_0000803 def: "Deepest layer of the layers of the epidermis[WP]." [Wikipedia:Stratum_germinativum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Malpighian layer" RELATED [BTO:0000438] synonym: "basal cell layer of epidermis" EXACT [FMA:67540] synonym: "epidermis basal layer" RELATED [] synonym: "epidermis stratum basale" EXACT [] synonym: "epidermis stratum germinativum" RELATED [] synonym: "stratum basalis of epidermis" EXACT [] synonym: "stratum germinativum" EXACT [] xref: AAO:0010598 xref: BTO:0000438 xref: FMA:67540 xref: MA:0000803 xref: SCTID:419481005 xref: XAO:0000041 xref: ZFA:0001180 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002026 name: stratum spinosum of epidermis namespace: uberon alt_id: UBERON:FMA_67542-MA_0000807 def: "a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to 'water-proof' the skin. Keratinization begins in the stratum spinosum." [Wikipedia:Stratum_spinosum] synonym: "epidermis prickle cell layer" RELATED [] synonym: "epidermis stratum spinosum" EXACT [] synonym: "prickle cell layer" RELATED [BTO:0000435] synonym: "prickle cell layer of epidermis" EXACT [FMA:67542] synonym: "squamous cell layer of epidermis" EXACT [] synonym: "stratum malphighii" EXACT [] synonym: "stratum spinosum" EXACT [] xref: BTO:0000435 xref: FMA:67542 xref: MA:0000807 xref: SCTID:420086000 xref: ncithesaurus:Stratum_Spinosum is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002027 name: stratum corneum of epidermis namespace: uberon alt_id: UBERON:FMA_67545-MA_0000804 def: "outermost layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum." [Wikipedia:Stratum_corneum] comment: this skin layer is composed mainly of dead cells that lack nuclei. As these dead cells slough off on the surface in the thin air-filled stratum disjunctum, they are continuously replaced by new cells from the stratum germinativum (basale). In the human forearm, for example, about 1300 cells/cm2/hr are shed. This outer layer that is sloughed off is also known as the stratum dysjunctum. Cells of the stratum corneum contain keratin, a protein that helps keep the skin hydrated by preventing water evaporation. These cells can also absorb water, further aiding in hydration, and explaining why humans and other animals experience wrinkling of the skin on the fingers and toes (\"pruning\") when immersed in water for prolonged periods. In addition, this layer is responsible for the \"spring back\" or stretchy properties of skin. A weak glutenous protein bond pulls the skin back to its natural shape. The thickness of the stratum corneum varies according to the amount of protection and/or grip required by a region of the body. For example, the hands are typically used to grasp objects, requiring the palms to be covered with a thick stratum corneum. In a similar manner, the sole of the foot is prone to injury, and so it is protected with a thick stratum corneum layer. In general, the stratum corneum contains 15 to 20 layers of dead cells. The stratum corneum has a thickness between 10 and 40 NWallace et al, 2005." [FMA:7200, WA:dh, Wikipedia:Small_intestine, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior intestine" RELATED [] synonym: "intestinum tenue" RELATED [BTO:0000651] synonym: "mid intestine" RELATED [] synonym: "small bowel" EXACT [] synonym: "small intestine" EXACT [] xref: AAO:0010397 xref: BTO:0000651 xref: EFO:0000841 xref: EV:0100072 xref: FMA:7200 xref: GAID:313 xref: MA:0000337 xref: MAT:0000047 xref: MESH:A.03.492.411.620 xref: MIAA:0000047 xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA xref: SCTID:181250005 xref: TAO:0001323 xref: VHOG:0000055 xref: XAO:0000130 xref: ZFA:0001323 xref: galen:SmallIntestine xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png xref: ncithesaurus:Small_Intestine is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0002109 name: pair of nares namespace: uberon alt_id: UBERON:FMA_72005-ZFA_0000550 def: "Pair of nostrils." [Wikipedia:Nares] comment: Note this is a \"set of anatomical planes\" in FMA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nares" RELATED [] synonym: "nares set" EXACT [] synonym: "nostrils" EXACT [] synonym: "pair of nostrils" EXACT [] xref: FMA:72005 xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0002110 name: gallbladder namespace: uberon alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208 def: "a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder] comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "gall bladder" EXACT [] xref: AAO:0010114 xref: BTO:0000493 xref: EFO:0000853 xref: EHDAA2:0000699 xref: EHDAA:8062 xref: EMAPA:17202 xref: EV:0100090 xref: FMA:7202 xref: MA:0000356 xref: MAT:0000072 xref: MESH:A.03.159.439 xref: MIAA:0000072 xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA xref: SCTID:181269000 xref: TAO:0000208 xref: VHOG:0000221 xref: XAO:0000135 xref: ZFA:0000208 xref: galen:Gallbladder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Abdomal_organs.svg/200px-Abdomal_organs.svg.png xref: ncithesaurus:Gallbladder is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus is_a: UBERON:0005172 ! abdomen organ relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0002294 ! biliary system relationship: part_of UBERON:0002323 ! body cavity relationship: develops_from UBERON:0008835 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hepatic diverticulum [Term] id: UBERON:0002111 name: artery smooth muscle tissue namespace: uberon alt_id: UBERON:FMA_72024-MA_0000708 def: "A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arterial smooth muscle" EXACT [BTO:0000087] synonym: "artery smooth muscle" EXACT [] synonym: "artery smooth muscle tissue" EXACT [] synonym: "smooth muscle of artery" EXACT [FMA:72024] xref: BTO:0000087 xref: FMA:72024 xref: MA:0000708 xref: ncithesaurus:Artery_Smooth_Muscle_Tissue is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004237 ! blood vessel smooth muscle is_a: UBERON:0004695 ! arterial system smooth muscle [Term] id: UBERON:0002112 name: smooth muscle of esophagus namespace: uberon alt_id: UBERON:FMA_72025-MA_0001573 def: "A portion of smooth muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic] synonym: "esophagus non-striated muscle" EXACT [OBOL:automatic] synonym: "esophagus smooth muscle" EXACT [] synonym: "esophagus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "gullet involuntary muscle" EXACT [OBOL:automatic] synonym: "gullet non-striated muscle" EXACT [OBOL:automatic] synonym: "gullet smooth muscle" EXACT [OBOL:automatic] synonym: "gullet smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of esophagus" EXACT [OBOL:automatic] synonym: "involuntary muscle of gullet" EXACT [OBOL:automatic] synonym: "involuntary muscle of oesophagus" EXACT [OBOL:automatic] synonym: "non-striated muscle of esophagus" EXACT [OBOL:automatic] synonym: "non-striated muscle of gullet" EXACT [OBOL:automatic] synonym: "non-striated muscle of oesophagus" EXACT [OBOL:automatic] synonym: "oesophagus involuntary muscle" EXACT [OBOL:automatic] synonym: "oesophagus non-striated muscle" EXACT [OBOL:automatic] synonym: "oesophagus smooth muscle" RELATED [] synonym: "oesophagus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of gullet" EXACT [OBOL:automatic] synonym: "smooth muscle of oesophagus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of esophagus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of gullet" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of oesophagus" EXACT [OBOL:automatic] xref: FMA:72025 xref: MA:0001573 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004226 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system smooth muscle relationship: part_of UBERON:0003832 ! esophagus muscle [Term] id: UBERON:0002113 name: kidney namespace: uberon alt_id: UBERON:FMA_7204-MA_0001683 alt_id: UBERON:FMA_7205-MA_0001655 def: "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney] subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "kidney" EXACT [] xref: AAO:0000250 xref: BTO:0000671 xref: EFO:0000929 xref: EV:0100096 xref: FMA:7203 xref: GAID:423 xref: MA:0000368 xref: MAT:0000119 xref: MESH:A.05.810.453 xref: MIAA:0000119 xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA xref: SCTID:181414000 xref: TAO:0000529 xref: XAO:0003267 xref: galen:Kidney xref: ncithesaurus:Kidney is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen organ is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001008 ! excretory system property_value: "spatially_disjoint_from" UBERON:0000160 [Term] id: UBERON:0002114 name: duodenum namespace: uberon alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236 def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "proximal intestine" RELATED [BTO:0000365] synonym: "upper intestine" RELATED [BTO:0000365] xref: AAO:0010402 xref: BTO:0000365 xref: EFO:0000851 xref: EHDAA:3830 xref: EHDAA:3937 xref: EMAPA:17178 xref: EMAPA:17193 xref: EMAPA:18661 xref: EMAPA:18852 xref: EV:0100073 xref: FMA:7206 xref: GAID:284 xref: MA:0000338 xref: MAT:0000044 xref: MESH:A.03.492.411.620.270 xref: MIAA:0000044 xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA xref: SCTID:181247007 xref: VHOG:0000052 xref: XAO:0000236 xref: galen:Duodenum xref: ncithesaurus:Duodenum is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0002108 ! small intestine property_value: "dubious_for_taxon" NCBITaxon:7955 [Term] id: UBERON:0002115 name: jejunum namespace: uberon alt_id: UBERON:FMA_7207-MA_0000340-MIAA_0000045 def: "The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum. [WP,unvetted]." [Wikipedia:Jejunum] comment: TODO consider ZFA:0001323 mid intestine, see also small intestine subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intestinum jejunum" RELATED [BTO:0000657] synonym: "middle intestine" RELATED [BTO:0000657] xref: BTO:0000657 xref: EFO:0001333 xref: EMAPA:18666 xref: EMAPA:18932 xref: EV:0100074 xref: FMA:7207 xref: GAID:318 xref: MA:0000340 xref: MAT:0000045 xref: MESH:A.03.492.411.620.625 xref: MIAA:0000045 xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA xref: SCTID:181248002 xref: VHOG:0000053 xref: galen:Jejunum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg xref: ncithesaurus:Jejunum is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0002116 name: ileum namespace: uberon alt_id: UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237 def: "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]." [Wikipedia:Ileum] comment: TODO consider ZFA:0000706 posterior intestine, see also colon subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "distal intestine" RELATED [BTO:0000620] synonym: "intestinum ileum" RELATED [BTO:0000620] synonym: "lower intestine" RELATED [BTO:0000620] xref: AAO:0010403 xref: BTO:0000620 xref: EFO:0001334 xref: EV:0100075 xref: FMA:7208 xref: GAID:315 xref: MA:0000339 xref: MAT:0000282 xref: MESH:A.03.492.411.620.484 xref: MIAA:0000282 xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA xref: SCTID:181249005 xref: VHOG:0000647 xref: XAO:0000237 xref: galen:Ileum xref: ncithesaurus:Ileum is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0002118 name: right ovary namespace: uberon alt_id: UBERON:FMA_7213-MA_0001705 def: "An ovary that is part of a right side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies xref: FMA:7213 xref: MA:0001705 xref: SCTID:280123002 xref: ncithesaurus:Right_Ovary is_a: UBERON:0000992 ! female gonad [Term] id: UBERON:0002119 name: left ovary namespace: uberon alt_id: UBERON:FMA_7214-MA_0001704 def: "An ovary that is part of a left side of organism [Obol]." [OBOL:automatic] comment: Taxon notes: In some elasmobranchs, the left ovary does not mature, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[Wikipedia:Ovary#In_other_animals] xref: FMA:7214 xref: MA:0001704 xref: SCTID:280124008 xref: ncithesaurus:Left_Ovary is_a: UBERON:0000992 ! female gonad [Term] id: UBERON:0002120 name: pronephros namespace: uberon alt_id: UBERON:0005794 alt_id: UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151 def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, Wikipedia:Pronephros] comment: Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "archinephron" RELATED [BTO:0001541] synonym: "embryonic kidney" RELATED [BTO:0001541] synonym: "pronephric kidney" EXACT [XAO:0002000] synonym: "pronephron" RELATED [BTO:0001541] xref: AAO:0011089 xref: BTO:0001541 xref: EFO:0000927 xref: EHDAA2:0001570 xref: EHDAA:1017 xref: EMAPA:16579 xref: FMA:72170 xref: MAT:0000117 xref: MIAA:0000117 xref: SCTID:308804007 xref: TAO:0000151 xref: VHOG:0000037 xref: XAO:0002000 xref: ZFA:0000151 xref: ncithesaurus:Pronephros is_a: UBERON:0002113 ! kidney is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0003887 ! intraembryonic coelom relationship: part_of UBERON:0002323 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! body cavity [Term] id: UBERON:0002122 name: capsule of thymus namespace: uberon alt_id: UBERON:FMA_72204-MA_0000766 def: "the fibrous connective tissue surrounding the thymus." [MP:0002368] comment: This class was created automatically from a combination of ontologies synonym: "thymic capsule" EXACT [] synonym: "thymus capsule" EXACT [] xref: FMA:72204 xref: MA:0000766 xref: SCTID:188181003 xref: ncithesaurus:Thymic_Capsule is_a: UBERON:0003893 ! capsule [Term] id: UBERON:0002123 name: cortex of thymus namespace: uberon alt_id: UBERON:FMA_72205-MA_0000767 def: "Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place." [Wikipedia:Thymus#Cortex] comment: Histologically, the thymus can be divided into a central medulla and a peripheral cortex which is surrounded by an outer capsule. The cortex and medulla play different roles in the development of T cells. Cells in the thymus can be divided into thymic stromal cells and cells of hematopoietic origin[WP] synonym: "thymic cortex" EXACT [BTO:0002934] synonym: "thymus cortex" EXACT [MA:0000767] xref: BTO:0002934 xref: FMA:72205 xref: MA:0000767 xref: SCTID:188262003 xref: ncithesaurus:Thymus_Cortex is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001851 ! cortex [Term] id: UBERON:0002124 name: medulla of thymus namespace: uberon alt_id: UBERON:FMA_72206-MA_0000771 def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [Wikipedia:Thymus#Medulla] comment: This class was created automatically from a combination of ontologies synonym: "medulla of thymus gland" EXACT [OBOL:automatic] synonym: "thymus gland medulla" EXACT [OBOL:automatic] synonym: "thymus medulla" EXACT [] xref: BTO:0004560 xref: EFO:0001969 xref: FMA:72206 xref: MA:0000771 xref: SCTID:188344009 xref: ncithesaurus:Thymus_Medulla is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000958 ! medulla relationship: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002125 name: lobule of thymus namespace: uberon alt_id: UBERON:FMA_72215-MA_0000770 def: "the basic structural unit of the thymus." [MP:0002367] comment: This class was created automatically from a combination of ontologies synonym: "thymic lobule" EXACT [] synonym: "thymus lobule" EXACT [MA:0000770] xref: FMA:72215 xref: MA:0000770 xref: SCTID:187882006 xref: ncithesaurus:Thymic_Lobule is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002126 name: solitary tract nuclear complex namespace: uberon alt_id: UBERON:FMA_72242-MA_0001052 def: "The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [Wikipedia:Nucleus_of_tractus_solitarius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nuclei of solitary tract" EXACT [] synonym: "nucleus tractus solitarii" EXACT [FMA:72242, FMA:TA] synonym: "solitary nuclei" EXACT [] xref: FMA:72242 xref: SCTID:369080003 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002162 property_value: "spatially_disjoint_from" UBERON:0002591 property_value: "spatially_disjoint_from" UBERON:0002610 property_value: "spatially_disjoint_from" UBERON:0002864 property_value: "spatially_disjoint_from" UBERON:0002866 property_value: "spatially_disjoint_from" UBERON:0002873 property_value: "spatially_disjoint_from" UBERON:0007633 [Term] id: UBERON:0002127 name: inferior olivary complex namespace: uberon alt_id: UBERON:FMA_72243-MA_0001040-ZFA_0000215 def: "largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caudal olivary nuclei" RELATED [BTO:0002298] synonym: "complexus olivaris inferior" RELATED [BTO:0002298] synonym: "inferior olivary nuclear complex" EXACT [FMA:72243] synonym: "inferior olivary nuclei" RELATED [BTO:0002298] synonym: "inferior olivary nucleus" RELATED [FMA:72243] synonym: "inferior olive" EXACT [FMA:72243] synonym: "nuclei olivares caudales" RELATED [BTO:0002298] synonym: "nuclei olivares inferiores" RELATED [BTO:0002298] synonym: "oliva" EXACT [FMA:72243, FMA:TA] xref: ABA:IO xref: BM:Me-IO xref: BTO:0002298 xref: EV:0100277 xref: FMA:72243 xref: MA:0001040 xref: NIF_GrossAnatomy:birnlex_1164 xref: TAO:0000215 xref: ZFA:0000215 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/CerebCircuit.png/200px-CerebCircuit.png is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0006331 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! brainstem nucleus is_a: UBERON:0009662 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! hindbrain nucleus relationship: part_of UBERON:0000128 ! olivary body property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002128 name: superior olivary complex namespace: uberon alt_id: UBERON:FMA_72247-MA_0001026 def: "The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]." [Wikipedia:Superior_olivary_complex] comment: GO -- In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. -- TODO fix GO def to be the same throughout subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus olivaris superior" EXACT [FMA:72247, FMA:TA] synonym: "superior olivary nuclei" EXACT [FMA:72247] synonym: "superior olivary nucleus" RELATED [FMA:72247] synonym: "superior olive" EXACT [FMA:72247] xref: ABA:SOC xref: EV:0100263 xref: FMA:72247 xref: NIF_GrossAnatomy:birnlex_1307 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0000988 ! pons property_value: "spatially_disjoint_from" UBERON:0002597 property_value: "spatially_disjoint_from" UBERON:0006840 property_value: "spatially_disjoint_from" UBERON:0007634 [Term] id: UBERON:0002129 name: cerebellar cortex namespace: uberon alt_id: UBERON:FMA_72248-MA_0000199 def: "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]." [Wikipedia:Cerebellar_cortex] comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cortex cerebellaris" RELATED [BTO:0000043] xref: ABA:CBX xref: BM:CB-Cbx xref: BTO:0000043 xref: EV:0100294 xref: FMA:72248 xref: GAID:596 xref: MA:0000199 xref: MESH:A.08.186.211.132.810.428.200.212 xref: NIF_GrossAnatomy:birnlex_1566 xref: SCTID:361593004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png xref: ncithesaurus:Cerebellar_Cortex is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002037 ! cerebellum property_value: "spatially_disjoint_from" UBERON:0002130 [Term] id: UBERON:0002130 name: cerebellar nuclear complex namespace: uberon alt_id: UBERON:0004007 alt_id: UBERON:FMA_72249-MA_0000203 def: "the gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP]" [MP:0009979, Wikipedia:Deep_cerebellar_nuclei] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central nuclei" EXACT [] synonym: "cerebellar nuclei" EXACT [] synonym: "deep cerebellar nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1568] synonym: "deep cerebellar nuclei" EXACT [] synonym: "deep cerebellar nucleus" EXACT [] synonym: "intracerebellar nuclei" EXACT [] synonym: "intrinsic nuclei of cerebellum" EXACT [] synonym: "nuclei cerebelli" EXACT [FMA:72249, FMA:TA] synonym: "roof nuclei-2" EXACT [] xref: ABA:CBN xref: EV:0100299 xref: FMA:72249 xref: GAID:599 xref: MA:0000203 xref: MESH:A.08.186.211.132.810.428.200.337 xref: NIF_GrossAnatomy:birnlex_1568 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002037 ! cerebellum property_value: "spatially_disjoint_from" UBERON:0002129 [Term] id: UBERON:0002131 name: anterior lobe of cerebellum namespace: uberon alt_id: UBERON:FMA_72251-MA_0000991 def: "The anterior lobe of cerebellum is the portion of the cerebellum responsible for mediating unconscious proprioception. In alcoholics, it can deteriorate. It is sometimes equated to the 'paleocerebellum'. [WP,unvetted]." [Wikipedia:Anterior_lobe_of_cerebellum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior cerebellar lobe" EXACT [] synonym: "anterior lobe of cerebellum" EXACT [] synonym: "anterior lobe of the cerebellum" EXACT [NIF_GrossAnatomy:birnlex_1118] synonym: "cerebellum anterior lobe" EXACT [] xref: EV:0100295 xref: FMA:72251 xref: MA:0000991 xref: NIF_GrossAnatomy:birnlex_1118 xref: SCTID:279359004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/CerebellumRegions.jpg/200px-CerebellumRegions.jpg is_a: UBERON:0005293 ! cerebellum lobe [Term] id: UBERON:0002132 name: dentate nucleus namespace: uberon alt_id: UBERON:FMA_72260-MA_0001008 def: "The Dentate nucleus is located within the deep white matter of each cerebellar hemisphere. It is the largest of the four deep cerebellar nuclei, the others being the fastigial nucleus and the interposed nucleus (globose and emboliform nuclei combined). It is responsible for the planning, initiation and control of volitional movements. It therefore receives its afferents from the premotor cortex and the supplementary motor cortex. Its efferents project via the superior cerebellar peduncle through the red nucleus to the ventrolateral thalamus (crossing over at the pontomesencephalic junction). It consists of an irregularly folded, of a grayish-yellow color, containing white fibers, and presenting on its antero-medial aspect an opening, the hilus, from which most of the fibers of the superior peduncle emerge. [WP,unvetted]." [Wikipedia:Dentate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dentate cerebellar nucleus" EXACT [NIF_GrossAnatomy:birnlex_1171] synonym: "lateral cerebellar nucleus" EXACT [] synonym: "lateral nucleus of cerebellum" EXACT [] xref: ABA:DN xref: BM:CB-CBL xref: EV:0100300 xref: FMA:72260 xref: MA:0001008 xref: NIF_GrossAnatomy:birnlex_1171 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png is_a: UBERON:0002130 ! cerebellar nuclear complex is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002130 ! cerebellar nuclear complex property_value: "spatially_disjoint_from" UBERON:0002153 [Term] id: UBERON:0002133 name: atrioventricular valve namespace: uberon alt_id: UBERON:FMA_7233-ZFA_0005064 def: "Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001." [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "AV valve" EXACT [] xref: EHDAA2:0000153 xref: EHDAA:7421 xref: FMA:7233 xref: MA:0002789 xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg xref: SCTID:11124005 xref: TAO:0005064 xref: VHOG:0001472 xref: ZFA:0005064 xref: galen:AtrioventricularValve is_a: UBERON:0000946 ! cardial valve [Term] id: UBERON:0002134 name: tricuspid valve namespace: uberon alt_id: UBERON:FMA_7234-MA_0000090 def: "Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve.[FMA]" [FMA:FMA, Wikipedia:Tricuspid_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "right atrioventricular valve" EXACT [] synonym: "valva atrioventricularis dextra" EXACT [FMA:7234, FMA:TA] xref: EHDAA2:0004029 xref: EHDAA:7427 xref: EMAPA:17873 xref: FMA:7234 xref: GAID:567 xref: MA:0000090 xref: MESH:A.07.541.510.893 xref: OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0002081 xref: SCTID:181288007 xref: VHOG:0000816 xref: galen:TricuspidValve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: ncithesaurus:Tricuspid_Valve is_a: UBERON:0002133 ! atrioventricular valve is_a: UBERON:0005208 ! right atrium valve relationship: part_of UBERON:0005965 ! outflow part of right atrium [Term] id: UBERON:0002135 name: mitral valve namespace: uberon alt_id: UBERON:FMA_7235-MA_0000088 def: "Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve.[FMA]" [FMA:FMA, Wikipedia:Mitral_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bicuspid valve" RELATED [] synonym: "left atrioventricular valve" EXACT [] synonym: "valva atrioventricularis sinistra" EXACT [FMA:7235, FMA:TA] xref: EFO:0003933 xref: EHDAA2:0000168 xref: EMAPA:17871 xref: FMA:7235 xref: GAID:565 xref: MA:0000088 xref: MESH:A.07.541.510.507 xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA xref: SCTID:181286006 xref: VHOG:0000817 xref: galen:MitralValve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: ncithesaurus:Mitral_Valve is_a: UBERON:0002133 ! atrioventricular valve disjoint_from: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0002136 name: hilus of dentate gyrus namespace: uberon alt_id: UBERON:FMA_72358-MA_0000947 comment: Merge with CA4? synonym: "CA4" RELATED [] synonym: "dentate gyrus hilus" EXACT [] synonym: "field CA4 of hippocampal formation" EXACT [] xref: FMA:72358 xref: MA:0000947 xref: NIF_GrossAnatomy:birnlex_1482 is_a: UBERON:0002744 ! hilum of dentate nucleus is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0002137 name: aortic valve namespace: uberon alt_id: UBERON:FMA_7236-MA_0000087 def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA]" [FMA:FMA, Wikipedia:Aortic_valve] comment: Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004628 xref: EFO:0003879 xref: EHDAA2:0000134 xref: EHDAA:4410 xref: EMAPA:17870 xref: FMA:7236 xref: GAID:563 xref: MA:0000087 xref: MESH:A.07.541.510.110 xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA xref: SCTID:181287002 xref: VHOG:0000815 xref: galen:AorticValve xref: ncithesaurus:Aortic_Valve is_a: UBERON:0005623 ! semi-lunar valve relationship: part_of UBERON:0005956 ! outflow part of left ventricle [Term] id: UBERON:0002138 name: habenulo-interpeduncular tract namespace: uberon alt_id: UBERON:FMA_72400-ZFA_0000353 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Meynert's retroflex bundle" EXACT [] synonym: "fasciculus retroflexus" EXACT [] synonym: "fasciculus retroflexus (meynert)" EXACT [NIF_GrossAnatomy:birnlex_1504] synonym: "habenulointerpeduncular fasciculus" EXACT [] synonym: "habenulointerpeduncular tract" RELATED [] synonym: "habenulopeduncular tract" EXACT [] synonym: "tractus habenulo-interpeduncularis" EXACT [ZFA:0000353] xref: BM:HPT xref: FMA:72400 xref: NIF_GrossAnatomy:birnlex_1504 xref: SCTID:369194000 xref: TAO:0000353 xref: ZFA:0000353 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0003931 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic white matter relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002139 name: subcommissural organ namespace: uberon alt_id: UBERON:FMA_72414-ZFA_0000683 def: "The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete somatostatin. It is named for its location relative to the posterior commissure. [WP,unvetted]." [Wikipedia:Subcommissural_organ] comment: Editors note: Check ZFA - currently stated as disjoint since the ZFA structure is part of the forebrain subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "SCO" RELATED [] xref: BTO:0001820 xref: FMA:72414 xref: GAID:794 xref: MA:0002941 xref: MESH:A.08.713.810 xref: NIF_GrossAnatomy:birnlex_1028 xref: SCTID:369193006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png is_a: UBERON:0002966 ! regional part of midbrain tectum is_a: UBERON:0010134 ! secretory circumventricular organ relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0002140 name: parabigeminal nucleus namespace: uberon alt_id: UBERON:FMA_72415-MA_0001074 comment: This class was created automatically from a combination of ontologies xref: ABA:PBG xref: BM:PBG xref: FMA:72415 xref: MA:0001074 xref: NIF_GrossAnatomy:birnlex_1007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002141 name: parvocellular oculomotor nucleus namespace: uberon alt_id: UBERON:FMA_72424-MA_0001071 def: "The Edinger-Westphal nucleus (also known as the accessory oculomotor nucleus) is the accessory parasympathetic cranial nerve nucleus of the oculomotor nerve, supplying the constricting muscles of the iris. Alternatively, the Edinger-Westphal nucleus is a term often used to refer to the adjacent population of non-preganglionic neurons that do not project to the ciliary ganglion, but rather project to the spinal cord, dorsal raphe nucleus, and septal nuclei. Unlike the classical, preganglionic Edinger-Westphal neurons that contain choline acetyltransferase, neurons of the non-preganglionic Edinger-Westphal nucleus have been shown to contain various stress- and feeding-related neuropeptides, such as Urocortin and cocaine- and amphetamine-regulated transcript. Proper nomenclature for this distinct brain region has not yet been established. [WP,unvetted]." [Wikipedia:Edinger-westphal_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "accessory oculomotor nucleus" EXACT [] synonym: "edinger-westphal nucleus" EXACT [] synonym: "nucleus Edinger-Westphal" EXACT [ZFA:0000244] synonym: "oculomotor nucleus, parvocellular part" EXACT [] xref: ABA:EW xref: BM:EW xref: FMA:72424 xref: MA:0001071 xref: NIF_GrossAnatomy:birnlex_822 xref: SCTID:62088007 xref: ZFA:0000244 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0002142 name: pedunculopontine tegmental nucleus namespace: uberon alt_id: UBERON:FMA_72429-MA_0001020 def: "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]." [Wikipedia:Pedunculopontine_tegmental_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "peduncular pontine nucleus" EXACT [] synonym: "pedunculopontine nucleus" EXACT [] xref: ABA:PPN xref: BM:Pons-PPT xref: FMA:72429 xref: MA:0001020 xref: NIF_GrossAnatomy:birnlex_1437 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002275 ! reticular formation property_value: "spatially_disjoint_from" UBERON:0001965 property_value: "spatially_disjoint_from" UBERON:0007412 [Term] id: UBERON:0002143 name: dorsal tegmental nucleus namespace: uberon alt_id: UBERON:FMA_72434-ZFA_0000346 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal tegmental nucleus (gudden)" EXACT [] synonym: "dorsal tegmental nucleus of gudden" EXACT [NIF_GrossAnatomy:birnlex_992] synonym: "gudden nucleus" EXACT [] synonym: "nucleus tegmentalis dorsalis" EXACT [ZFA:0000346] synonym: "nucleus tegmentalis posterior" EXACT [FMA:72434, FMA:TA] synonym: "posterior tegmental nucleus" EXACT [] synonym: "von Gudden's nucleus" EXACT [] xref: ABA:DTN xref: BM:TD xref: FMA:72434 xref: MA:0001013 xref: NIF_GrossAnatomy:birnlex_992 xref: TAO:0000346 xref: VHOG:0001368 xref: ZFA:0000346 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0000988 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pons property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002144 name: peripeduncular nucleus namespace: uberon alt_id: UBERON:FMA_72437-MA_0000875 def: "a group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive." [http://www.medilexicon.com/medicaldictionary.php?t=61630] comment: Note that FMA and NIF support this being part of midbrain tegmentum; MA places this in the thalamus and ABA supports thalamus. todo - check. for now we take a conservative position and assert overlaps for both rather than part of synonym: "peripeduncular nucleus of pons" EXACT [FMA:72437] xref: ABA:PP xref: BM:MB-PPN xref: FMA:72437 xref: MA:0000875 xref: NIF_GrossAnatomy:birnlex_1474 xref: SCTID:25949000 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001900 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! subthalamus property_value: "spatially_disjoint_from" UBERON:0002704 property_value: "spatially_disjoint_from" UBERON:0002776 [Term] id: UBERON:0002145 name: interpeduncular nucleus namespace: uberon alt_id: UBERON:FMA_72439-MA_0001069 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "interpeduncular ganglion" EXACT [] xref: ABA:IPN xref: BM:MB-IP xref: FMA:72439 xref: MA:0001069 xref: NIF_GrossAnatomy:birnlex_1000 xref: ZFA:0000903 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0002043 [Term] id: UBERON:0002146 name: pulmonary valve namespace: uberon alt_id: UBERON:FMA_7246-MA_0000089 def: "Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pulmonic valve" EXACT [] xref: EHDAA2:0001577 xref: EHDAA:4412 xref: EMAPA:17872 xref: FMA:7246 xref: GAID:566 xref: MA:0000089 xref: MESH:A.07.541.510.738 xref: OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA xref: SCTID:181289004 xref: VHOG:0000814 xref: galen:PulmonaryValve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: ncithesaurus:Pulmonary_Valve is_a: UBERON:0005623 ! semi-lunar valve [Term] id: UBERON:0002147 name: reticulotegmental nucleus namespace: uberon alt_id: UBERON:FMA_72471-MA_0001025 comment: This class was created automatically from a combination of ontologies synonym: "nucleus reticularis tegmenti pontis" EXACT [FMA:72471, FMA:TA] synonym: "reticular tegmental nucleus" EXACT [] synonym: "reticulotegmental nucleus of pons" EXACT [] synonym: "tegmental reticular nucleus, pontine gray" EXACT [] xref: ABA:TRN xref: FMA:72471 xref: MA:0001025 xref: NIF_GrossAnatomy:birnlex_882 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002275 ! reticular formation property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002148 name: locus ceruleus namespace: uberon alt_id: UBERON:FMA_72478-MA_0001017-ZFA_0000539 def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]." [GAID:577, GO:0021703, Wikipedia:Locus_ceruleus] comment: TODO - check ZFA/pons. also GO says part of dorsorostral pons subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "blue nucleus" EXACT [NIF_GrossAnatomy:birnlex_905] synonym: "caerulean nucleus" EXACT [] synonym: "locus caeruleus" EXACT [NIF_GrossAnatomy:birnlex_905] synonym: "locus cinereus" RELATED [BTO:0001408] synonym: "locus coeruleu" EXACT [] synonym: "locus coeruleus" EXACT [] synonym: "nucleus caeruleus" EXACT [FMA:72478, FMA:TA] synonym: "nucleus of locus caeruleus" EXACT [] synonym: "nucleus pigmentosus pontis" EXACT [NIF_GrossAnatomy:birnlex_905] synonym: "substantia ferruginea" EXACT [NIF_GrossAnatomy:birnlex_905] xref: ABA:LC xref: BM:Pons-LC xref: BTO:0001408 xref: EFO:0001963 xref: FMA:72478 xref: GAID:577 xref: MA:0001017 xref: MESH:A.08.186.211.132.659.473 xref: NIF_GrossAnatomy:birnlex_905 xref: SCTID:369016004 xref: TAO:0000539 xref: ZFA:0000539 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0001896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002047 property_value: "spatially_disjoint_from" UBERON:0002267 property_value: "spatially_disjoint_from" UBERON:0002587 property_value: "spatially_disjoint_from" UBERON:0003004 [Term] id: UBERON:0002149 name: superior salivatory nucleus namespace: uberon alt_id: UBERON:FMA_72482-MA_0001027 def: "visceromotor cranial nerve nucleus located in the pontine tegmentum." [Wikipedia:Superior_salivatory_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "superior salivary nucleus" EXACT [GO:0021753] xref: ABA:SSN xref: EHDAA2:0004646 xref: FMA:72482 xref: MA:0001027 xref: NIF_GrossAnatomy:birnlex_1131 xref: SCTID:369028007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002150 name: superior cerebellar peduncle namespace: uberon alt_id: UBERON:FMA_72495-MA_0002746 def: "The superior cerebellar peduncles (brachium conjunctivum), two in number, emerge from the upper and medial part of the white substance of the hemispheres and are placed under cover of the upper part of the cerebellum. They are joined to each other across the middle line by the anterior medullary velum, and can be followed upward as far as the inferior colliculi, under which they disappear. Below, they form the upper lateral boundaries of the fourth ventricle, but as they ascend they converge on the dorsal aspect of the ventricle and thus assist in roofing it in. All fibers (except vestibular fibers to the vestibular nuclei through the inferior cerebellar peduncle) carrying information from the cerebellum to the midbrain and pons pass through the superior cerebellar peduncle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_peduncle] comment: Editor notes: we follow NIF in dividing this into 3 parts. This allows for consistency with ABA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brachium conjunctivum" EXACT [NIF_GrossAnatomy:birnlex_1711] synonym: "superior peduncle" RELATED [Wikipedia:Superior_cerebellar_peduncle] xref: BM:BC xref: MA:0002746 xref: NIF_GrossAnatomy:birnlex_1711 xref: SCTID:279218008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png is_a: UBERON:0007416 ! cerebellar peduncle [Term] id: UBERON:0002151 name: pontine nuclear group namespace: uberon alt_id: UBERON:FMA_72512-MA_0001021 def: "The pontine nuclei are a part of the pons which store the memory of intention during motor activity. Corticopontine fibres carry information from the primary motor cortex to the ipsilateral pontine nucleus in the ventral pons, and the pontocerebellar projection then carries that information to the contralateral cerebellum via the middle cerebellar peduncle. They therefore allow modification of actions in the light of their outcome, or error correction, and are hence important in learning motor skills. [WP,unvetted]." [Wikipedia:Pontine_nuclei] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nuclei pontis" RELATED [BTO:0003396] synonym: "pontine gray" EXACT [NIF_GrossAnatomy:birnlex_1516] synonym: "pontine gray matter" RELATED [BTO:0003396] synonym: "pontine nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1516] synonym: "pontine nuclear group" EXACT [FMA:72512] synonym: "pontine nuclei" EXACT [] synonym: "pontine nucleus" EXACT [] xref: ABA:PG xref: BM:Pons-PGr xref: BTO:0003396 xref: FMA:72512 xref: MA:0001021 xref: NIF_GrossAnatomy:birnlex_1516 xref: SCTID:304942009 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002567 ! basal part of pons property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002152 name: middle cerebellar peduncle namespace: uberon alt_id: UBERON:FMA_72515-MA_0002745 def: "The middle cerebellar peduncles (brachia pontis) are composed entirely of centripetal fibers, which arise from the cells of the nuclei pontis of the opposite side and end in the cerebellar cortex; the fibers are arranged in three fasciculi, superior, inferior, and deep. The superior fasciculus, the most superficial, is derived from the upper transverse fibers of the pons; it is directed backward and lateralward superficial to the other two fasciculi, and is distributed mainly to the lobules on the inferior surface of the cerebellar hemisphere and to the parts of the superior surface adjoining the posterior and lateral margins. The inferior fasciculus is formed by the lowest transverse fibers of the pons; it passes under cover of the superior fasciculus and is continued downward and backward more or less parallel with it, to be distributed to the folia on the under surface close to the vermis. The deep fasciculus comprises most of the deep transverse fibers of the pons. It is at first covered by the superior and inferior fasciculi, but crosses obliquely and appears on the medial side of the superior, from which it receives a bundle; its fibers spread out and pass to the upper anterior cerebellar folia. The fibers of this fasciculus cover those of the restiform body. [WP,unvetted]." [Wikipedia:Middle_cerebellar_peduncle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brachium pontis" EXACT [NIF_GrossAnatomy:birnlex_1529] xref: BM:Pons-BP xref: FMA:72515 xref: MA:0002745 xref: NIF_GrossAnatomy:birnlex_1529 xref: NIF_GrossAnatomy:birnlex_1699 xref: SCTID:279219000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2b/Gray705.png/200px-Gray705.png is_a: UBERON:0003544 ! brain white matter is_a: UBERON:0007416 ! cerebellar peduncle relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0002567 ! basal part of pons [Term] id: UBERON:0002153 name: fastigial nucleus namespace: uberon alt_id: UBERON:FMA_72537-MA_0001009 def: "The fastigial nucleus or nucleus fastigii refers specifically to the concentration of gray matter nearest to the middle line at the anterior end of the superior vermis, and immediately over the roof of the fourth ventricle, from which it is separated by a thin layer of white matter. It is smaller than the nucleus dentatus, but somewhat larger than the nucleus emboliformis and nucleus globosus, the other two independent centers of gray matter in the cerebellum. [WP,unvetted]." [Wikipedia:Fastigial_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "medial (fastigial) nucleus" EXACT [] synonym: "medial cerebellar nucleus" EXACT [] synonym: "roof nucleus-1" EXACT [] xref: ABA:FN xref: BM:CB-CBM xref: FMA:72537 xref: MA:0001009 xref: NIF_GrossAnatomy:birnlex_1146 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png is_a: UBERON:0002130 ! cerebellar nuclear complex is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002130 ! cerebellar nuclear complex property_value: "spatially_disjoint_from" UBERON:0002132 [Term] id: UBERON:0002154 name: lateral reticular nucleus namespace: uberon alt_id: UBERON:FMA_72574-MA_0001047-ZFA_0000535 def: "The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis. [WP,unvetted]." [Wikipedia:Lateral_reticular_nucleus] comment: Comment: note in ABA this is disjoint from MDR, but we relax this here to accomodate FMA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral reticular nucleus (medulla)" EXACT [] xref: ABA:LRN xref: BM:LR xref: FMA:72574 xref: MA:0001047 xref: NIF_GrossAnatomy:nlx_anat_20081246 xref: TAO:0000535 xref: ZFA:0000535 is_a: UBERON:0002579 ! regional part of medullary reticular formation is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0009775 ! lateral medullary reticular complex relationship: part_of UBERON:0005374 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! spinal cord lateral column property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002155 name: gigantocellular nucleus namespace: uberon alt_id: UBERON:FMA_72576-MA_0001037 def: "The gigantocellular nucleus, as the name indicates, is mainly composed of the so called giant neuronal cells. This nucleus has been known to innervate the caudal hypoglossal nucleus, and responds to glutamateric stimuli. The gigantocellular nucleus excites the hypoglossal nucleus, and can play a role in the actions of the said nerve . This nucleus receives connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Retrograde studies have shown that the deep mesencephalic reticular formation and oral pontine reticular nucleus project to the nucleus gigantocellularis. The dorsal rostral section of the nucleus reticularis gigantocellularis is also involved mediating in expiration (or out-breathing) along with the parvocellular nucleus. [WP,unvetted]." [Wikipedia:Gigantocellular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gigantocellular reticular nucleus" EXACT [] synonym: "nucleus gigantocellularis" EXACT [FMA:72576, FMA:TA] xref: ABA:GRN xref: FMA:72576 xref: MA:0001037 xref: NIF_GrossAnatomy:nlx_anat_1005001 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002156 name: nucleus raphe magnus namespace: uberon alt_id: UBERON:FMA_72584-MA_0001024 def: "The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]." [Wikipedia:Nucleus_raphe_magnus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "magnus raphe nucleus" EXACT [] synonym: "nucleus raphes magnus" EXACT [FMA:72584, FMA:TA] synonym: "raphe magnus" RELATED [Wikipedia:Nucleus_raphe_magnus] synonym: "raphe magnus nucleus" EXACT [NIF_GrossAnatomy:birnlex_1363] xref: ABA:RM xref: EFO:0002518 xref: FMA:72584 xref: MA:0001024 xref: NIF_GrossAnatomy:birnlex_1363 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002677 ! regional part of medullary raphe nuclear complex is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 ! medullary raphe nuclear complex property_value: "spatially_disjoint_from" UBERON:0002157 property_value: "spatially_disjoint_from" UBERON:0002684 [Term] id: UBERON:0002157 name: nucleus raphe pallidus namespace: uberon alt_id: UBERON:FMA_72586-MA_0001051 def: "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]." [Wikipedia:Nucleus_raphe_pallidus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus raphes pallidus" EXACT [FMA:72586, FMA:TA] synonym: "pallidal raphe nucleus" EXACT [] synonym: "raphe pallidus nucleus" EXACT [] xref: ABA:RPA xref: FMA:72586 xref: MA:0001051 xref: NIF_GrossAnatomy:birnlex_1375 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002677 ! regional part of medullary raphe nuclear complex is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 ! medullary raphe nuclear complex property_value: "spatially_disjoint_from" UBERON:0002156 property_value: "spatially_disjoint_from" UBERON:0002684 [Term] id: UBERON:0002158 name: principal inferior olivary nucleus namespace: uberon alt_id: UBERON:FMA_72592-MA_0001046 def: "The inferior olivary nucleus that consists of the major laminar structure." [Wikipedia:Olivary_body#Olivary_nuclei] comment: This class was created automatically from a combination of ontologies synonym: "chief inferior olivary nucleus" EXACT [] synonym: "convoluted olive" EXACT [NIF_GrossAnatomy:nlx_anat_20081248] synonym: "inferior olivary complex, principal olive" EXACT [] synonym: "inferior olive principal nucleus" EXACT [] synonym: "inferior olive, principal nucleus" EXACT [] synonym: "main olivary nucleus" EXACT [] synonym: "nucleus olivaris principalis" EXACT [FMA:72592, FMA:TA] synonym: "principal nucleus of inferior olive" EXACT [] synonym: "principal olivary nucleus" EXACT [] synonym: "principal olive" EXACT [NIF_GrossAnatomy:nlx_anat_20081248] xref: FMA:72592 xref: MA:0001046 xref: NIF_GrossAnatomy:nlx_anat_20081248 is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0002159 name: medial accessory inferior olivary nucleus namespace: uberon alt_id: UBERON:FMA_72594-MA_0001045 def: "The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally" [Wikipedia:Olivary_body#Olivary_nuclei] comment: This class was created automatically from a combination of ontologies synonym: "inferior olivary complex, medial accessory olive" EXACT [] synonym: "inferior olive medial nucleus" EXACT [] synonym: "inferior olive, medial nucleus" EXACT [] synonym: "medial accessory olivary nucleus" EXACT [] synonym: "nucleus olivaris accessorius medialis" EXACT [FMA:72594, FMA:TA] xref: FMA:72594 xref: MA:0001045 xref: SCTID:369069003 is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0002160 name: nucleus prepositus namespace: uberon alt_id: UBERON:FMA_72596-MA_0001023 comment: This class was created automatically from a combination of ontologies synonym: "nucleus praepositus" EXACT [NIF_GrossAnatomy:birnlex_2652] synonym: "nucleus prepositus hypoglossus" RELATED [] synonym: "prepositus hypoglossal nucleus" EXACT [] synonym: "prepositus nucleus" EXACT [] xref: ABA:PRP xref: FMA:72596 xref: MA:0001023 xref: NIF_GrossAnatomy:birnlex_2652 xref: SCTID:369078009 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons property_value: "spatially_disjoint_from" UBERON:0002881 [Term] id: UBERON:0002161 name: gracile nucleus namespace: uberon alt_id: UBERON:FMA_72602-MA_0001038 def: "Located in the medulla oblongata, the gracile nucleus is one of the dorsal column nuclei that participate in the sensation of fine touch and proprioception of the lower body (legs and trunk). It contains second-order neurons of the dorsal column-medial lemniscus system, which receive inputs from sensory neurons of the dorsal root ganglia and send axons that synapse in the thalamus. The neurons contained within the nucleus form a visible bump called the gracile tubercle on the posterior side of the closed medulla at the floor of the fourth ventricle. The gracile nucleus and fasciculus carry epicritic, kinesthetic, and conscious proprioceptive information from the lower part of the body (below the level of T6 in the spinal cord). The counterpart to the gracile nucleus and fasciculus is the cuneate nucleus and fasciculus, which carries the same type of information, but from the upper body (above T6, excepting the face and ear - the information from the face and ear is carried by the primary sensory trigeminal nucleus). [WP,unvetted]." [Wikipedia:Gracile_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Goll's nucleus" EXACT [] synonym: "golls nucleus" EXACT [NIF_GrossAnatomy:birnlex_2643] synonym: "nucleus gracilis" EXACT [NIF_GrossAnatomy:birnlex_2643] xref: ABA:GR xref: BM:Me-Gr xref: EV:0100280 xref: FMA:72602 xref: MA:0001038 xref: NIF_GrossAnatomy:birnlex_2643 xref: SCTID:369071003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray688.png/200px-Gray688.png is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002045 [Term] id: UBERON:0002162 name: area postrema namespace: uberon alt_id: UBERON:FMA_72607-MA_0001034-ZFA_0005146 def: "A small, rounded eminence on each side of the FOURTH VENTRICLE, which receives nerve fibers from the SOLITARY NUCLEUS , SPINAL CORD, and adjacent areas of the MEDULLA. The area postrema lies outside the BLOOD-BRAIN BARRIER and its functions include acting as an emetic chemoreceptor." [MESH:A.08.186.211.132.810.406.286, Wikipedia:Area_postrema] comment: Function notes: vomiting center in humans[WP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: ABA:AP xref: BTO:0003425 xref: FMA:72607 xref: GAID:591 xref: MA:0001034 xref: MESH:A.08.186.211.132.810.406.286 xref: NIF_GrossAnatomy:birnlex_2636 xref: SCTID:369039005 xref: TAO:0005146 xref: ZFA:0005146 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0010135 ! sensory circumventricular organ relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002126 property_value: "spatially_disjoint_from" UBERON:0002591 property_value: "spatially_disjoint_from" UBERON:0002610 property_value: "spatially_disjoint_from" UBERON:0002864 property_value: "spatially_disjoint_from" UBERON:0002866 property_value: "spatially_disjoint_from" UBERON:0002873 property_value: "spatially_disjoint_from" UBERON:0007633 [Term] id: UBERON:0002163 name: inferior cerebellar peduncle namespace: uberon alt_id: UBERON:FMA_72615-MA_0002744 def: "The upper part of the posterior district of the medulla oblongata is occupied by the inferior peduncle, a thick rope-like strand situated between the lower part of the fourth ventricle and the roots of the glossopharyngeal and vagus nerves. Each cerebellar inferior peduncle connects the medulla spinalis and medulla oblongata with the cerebellum, and comprises the juxtarestiform body and restiform body. Important fibers running through the inferior cerebellar peduncle include the spinocerebellar tract and axons from the inferior olivary nucleus, among others. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_peduncle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "corpus restiforme" EXACT [FMA:72615, FMA:TA] synonym: "inferior peduncle" RELATED [Wikipedia:Inferior_cerebellar_peduncle] synonym: "restiform body" EXACT [NIF_GrossAnatomy:birnlex_1691] xref: BM:RB xref: FMA:72615 xref: MA:0002744 xref: NIF_GrossAnatomy:birnlex_1645 xref: NIF_GrossAnatomy:birnlex_1691 xref: SCTID:362418008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray677.png/200px-Gray677.png is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter is_a: UBERON:0007416 ! cerebellar peduncle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002164 name: tectobulbar tract namespace: uberon alt_id: UBERON:FMA_72645-ZFA_0000446 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "tecto-bulbar tract" EXACT [] xref: FMA:72645 xref: NIF_GrossAnatomy:birnlex_750 xref: SCTID:369265000 xref: TAO:0000446 xref: ZFA:0000446 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0002316 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002165 name: endocardium namespace: uberon alt_id: UBERON:FMA_7280-XAO_0000066-ZFA_0001320 def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium] comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "heart endocardium" EXACT [] xref: AAO:0010408 xref: BTO:0000387 xref: EFO:0000821 xref: EHDAA2:0004153 xref: EV:0100021 xref: FMA:7280 xref: GAID:550 xref: MA:0000076 xref: MAT:0000455 xref: MESH:A.07.541.207 xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw xref: SCTID:362013006 xref: TAO:0001320 xref: VHOG:0000084 xref: XAO:0000066 xref: ZFA:0001320 xref: galen:Endocardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray493.png/200px-Gray493.png xref: ncithesaurus:Endocardium is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0005983 ! heart layer is_a: UBERON:0004852 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! cardiovascular system endothelium relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002166 name: endocardium of atrium namespace: uberon alt_id: UBERON:FMA_7284-MA_0000077-ZFA_0001614 def: "Endocardium that is part of the atrium." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Cardiac atria endocardium" EXACT [OBOL:automatic] synonym: "atrial endocardium" EXACT [] synonym: "atrium endocardium" EXACT [] synonym: "atrium of heart endocardium" EXACT [OBOL:automatic] synonym: "cardiac atrium endocardium" EXACT [OBOL:automatic] synonym: "endocardium of Cardiac atria" EXACT [OBOL:automatic] synonym: "endocardium of atrium of heart" EXACT [OBOL:automatic] synonym: "endocardium of cardiac atrium" EXACT [OBOL:automatic] synonym: "endocardium of heart atrium" EXACT [OBOL:automatic] synonym: "heart atrium endocardium" EXACT [OBOL:automatic] xref: FMA:7284 xref: MA:0000077 xref: SCTID:192001005 xref: VHOG:0000606 xref: ZFA:0001614 is_a: UBERON:0002165 ! endocardium relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002167 name: right lung namespace: uberon alt_id: UBERON:FMA_7309-MA_0000426 def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0001730 xref: EHDAA:4969 xref: EMAPA:17661 xref: FMA:7309 xref: MA:0000426 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:361967000 xref: VHOG:0000301 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png xref: ncithesaurus:Right_Lung is_a: UBERON:0002048 ! lung [Term] id: UBERON:0002168 name: left lung namespace: uberon alt_id: UBERON:FMA_7310-MA_0000425 def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]" [FMA:FMA, Wikipedia:Left_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000943 xref: EHDAA:4947 xref: EMAPA:17653 xref: FMA:7310 xref: MA:0000425 xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:361982005 xref: VHOG:0000618 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dd/Gray973.png/200px-Gray973.png xref: ncithesaurus:Left_Lung is_a: UBERON:0002048 ! lung [Term] id: UBERON:0002169 name: alveolar sac namespace: uberon alt_id: UBERON:0008871 alt_id: UBERON:FMA_7317-MA_0000418 def: "the small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters" [MP:0010902, Wikipedia:Alveolar_sac] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "air sac" RELATED [MP:0010902] synonym: "pulmonary alveolar sac" EXACT [MP:0010902] synonym: "sacculus alveolaris" EXACT [FMA:7317] xref: BTO:0000061 xref: FMA:7317 xref: MA:0000418 xref: OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA xref: ncithesaurus:Alveolar_Sac is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0007499 ! epithelial sac relationship: part_of UBERON:0006524 ! alveolar system relationship: part_of UBERON:0008874 ! pulmonary acinus [Term] id: UBERON:0002170 name: upper lobe of right lung namespace: uberon alt_id: UBERON:FMA_7333-MA_0000429 def: "The lobe of the right lung that is closest to the head." [UBERON:cjm] synonym: "lobus superior pulmonis dextri" EXACT [FMA:TA] synonym: "right cranial lobe of lung" EXACT [] synonym: "right lung cranial lobe" EXACT [MA:0000429] synonym: "right lung superior lobe" RELATED [MA:0000429] synonym: "right upper lobe" EXACT [FMA:7333] synonym: "right upper lobe of lung" EXACT [FMA:7333] synonym: "superior lobe of right lung" EXACT [FMA:7333] synonym: "upper lobe of right lung" EXACT [galen:UpperLobeOfRightLung] xref: EHDAA2:0001747 xref: EHDAA:4987 xref: EMAPA:17991 xref: FMA:7333 xref: MA:0000429 xref: SCTID:361969002 xref: VHOG:0000859 xref: galen:UpperLobeOfRightLung xref: ncithesaurus:Upper_Lobe_of_the_Right_Lung is_a: UBERON:0006518 ! right lung lobe is_a: UBERON:0008948 ! upper lobe of lung [Term] id: UBERON:0002171 name: lower lobe of right lung namespace: uberon alt_id: UBERON:FMA_7337-MA_0000428 def: "The lobe of the right lung that is furtherst from the head." [UBERON:cjm] synonym: "inferior lobe of right lung" EXACT [FMA:7337] synonym: "lobus inferior pulmonis dextri" EXACT [FMA:7337, FMA:TA] synonym: "lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung] synonym: "right caudal lobe of lung" EXACT [] synonym: "right lower lobe" EXACT [FMA:7337] synonym: "right lower lobe of lung" EXACT [FMA:7337] synonym: "right lung caudal lobe" RELATED [MA:0000428] synonym: "right lung inferior lobe" RELATED [MA:0000428] xref: EHDAA2:0001740 xref: EHDAA:4979 xref: EMAPA:17986 xref: FMA:7337 xref: MA:0000428 xref: SCTID:361976007 xref: VHOG:0000857 xref: galen:LowerLobeOfRightLung xref: ncithesaurus:Lower_Lobe_of_the_Right_Lung is_a: UBERON:0006518 ! right lung lobe is_a: UBERON:0008949 ! lower lobe of lung [Term] id: UBERON:0002172 name: alveolar atrium namespace: uberon alt_id: UBERON:FMA_7340-MA_0000419 synonym: "alveolus of lung atrium" EXACT [OBOL:automatic] synonym: "atrium alveolare" EXACT [] synonym: "atrium of alveolus" EXACT [] synonym: "atrium of alveolus of lung" EXACT [OBOL:automatic] synonym: "atrium of lung alveolus" EXACT [OBOL:automatic] synonym: "lung alveolus atrium" EXACT [OBOL:automatic] xref: FMA:7340 xref: MA:0000419 xref: SCTID:201806004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0002173 name: alveolar duct namespace: uberon alt_id: UBERON:FMA_7341-MA_0000417 def: "Alveolar ducts are the tiny end ducts of the branching airways that fill the lungs. Each lung holds approximately 1.5 to 2 million of them. The tubules divide into two or three alveolar sacs at the distal end. They are formed from the confluence openings of several alveoli. Distal terminations of alveolar ducts are atria which then end in alveolar sacs. In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation. [WP,unvetted]." [Wikipedia:Alveolar_duct] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:19183 xref: EMAPA:19185 xref: EMAPA:19187 xref: EMAPA:19189 xref: EMAPA:19191 xref: FMA:7341 xref: MA:0000417 xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA xref: ncithesaurus:Alveolar_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0002174 name: middle lobe of right lung namespace: uberon alt_id: UBERON:FMA_7383-MA_0000430 def: "In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]." [Wikipedia:Middle_lobe_of_right_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intermediate lobe of right lung" EXACT [] synonym: "lobus medius pulmonis dextri" EXACT [FMA:7383, FMA:TA] synonym: "middle lobe of lung" BROAD [FMA:7383] synonym: "right lung middle lobe" EXACT [] synonym: "right lung, middle lobe" EXACT [] synonym: "right middle lobe" EXACT [] synonym: "right middle lobe of lung" EXACT [] xref: EMAPA:17997 xref: FMA:7383 xref: MA:0000430 xref: SCTID:361973004 xref: galen:MiddleLobeOfRightLung xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png xref: ncithesaurus:Middle_Lobe_of_the_Right_Lung is_a: UBERON:0006518 ! right lung lobe is_a: UBERON:0008955 ! middle lobe/projection of lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002175 name: intermediolateral nucleus namespace: uberon alt_id: UBERON:FMA_73915-MA_0002753 def: "The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]." [Wikipedia:Intermediolateral_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intermediolateral nucleus of spinal cord" EXACT [] synonym: "nucleus intermediolateralis medullae spinalis" EXACT [FMA:73915, FMA:TA] synonym: "spinal cord intermediolateral nucleus" EXACT [] xref: FMA:73915 xref: MA:0002753 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg/200px-Medulla_spinalis_-_Substantia_grisea_-_English.svg.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002315 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gray matter of spinal cord [Term] id: UBERON:0002176 name: lateral cervical nucleus namespace: uberon alt_id: UBERON:FMA_73921-MA_0002755 comment: This class was created automatically from a combination of ontologies xref: FMA:73921 xref: MA:0002755 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002177 name: right main bronchus namespace: uberon alt_id: UBERON:FMA_7395-MA_0001849 def: "The right main bronchus (or right primary bronchus, or right principal bronchus) is a bronchus of the respiratory system. It is wider, shorter, and more vertical in direction than the left. It is about 2.5 cm. long, and enters the right lung nearly opposite the fifth thoracic vertebra. The azygos vein arches over it from behind; and the right pulmonary artery lies at first below and then in front of it. About 2 cm. from its commencement it gives off a branch to the upper lobe of the right lung. This is termed the eparterial branch of the bronchus, because it arises above the right pulmonary artery. The bronchus now passes below the artery, and is known as the hyparterial branch; it divides into two branches for the middle and lower lobes. [WP,unvetted]." [Wikipedia:Right_main_bronchus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "right bronchus" EXACT [] synonym: "right primary bronchus" EXACT [Wikipedia:Right_main_bronchus] synonym: "right principal bronchus" EXACT [Wikipedia:Right_main_bronchus] xref: FMA:7395 xref: MA:0001849 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvoIuvJwpEbGdrcN5Y29ycA xref: SCTID:361955002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: ncithesaurus:Right_Main_Bronchus is_a: UBERON:0002182 ! main bronchus [Term] id: UBERON:0002178 name: left main bronchus namespace: uberon alt_id: UBERON:FMA_7396-MA_0001843 def: "The left main bronchus (or left primary bronchus, or left principal bronchus) is smaller in caliber but longer than the right, being nearly 5 cm long. It enters the root of the left lung opposite the sixth thoracic vertebra. It passes beneath the aortic arch, crosses in front of the esophagus, the thoracic duct, and the descending aorta, and has the left pulmonary artery lying at first above, and then in front of it. The left bronchus has no eparterial branch, and therefore it has been supposed by some that there is no upper lobe to the left lung, but that the so-called upper lobe corresponds to the middle lobe of the right lung. [WP,unvetted]." [Wikipedia:Left_main_bronchus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "left bronchus" EXACT [] synonym: "left primary bronchus" EXACT [Wikipedia:Left_main_bronchus] synonym: "left principal bronchus" EXACT [Wikipedia:Left_main_bronchus] xref: FMA:7396 xref: MA:0001843 xref: SCTID:361959008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: ncithesaurus:Left_Main_Bronchus is_a: UBERON:0002182 ! main bronchus [Term] id: UBERON:0002179 name: lateral funiculus namespace: uberon alt_id: UBERON:FMA_74000-ZFA_0000533 def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Lateral_funiculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral funiculus of spinal cord" EXACT [] synonym: "lateral white column of spinal cord" EXACT [FMA:74000] xref: FMA:74000 xref: SCTID:362434006 xref: TAO:0000533 xref: ZFA:0000533 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png is_a: UBERON:0006127 ! funiculus of spinal cord [Term] id: UBERON:0002180 name: ventral funiculus namespace: uberon alt_id: UBERON:FMA_74003-ZFA_0000605 def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Ventral_funiculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior funiculus" EXACT [] synonym: "anterior funiculus of spinal cord" EXACT [] synonym: "anterior white column of spinal cord" EXACT [FMA:74003] synonym: "funiculus anterior medullae spinalis" EXACT [FMA:74003, FMA:TA] synonym: "ventral funiculus of spinal cord" EXACT [] synonym: "ventral white column of spinal cord" EXACT [FMA:74003] xref: FMA:74003 xref: SCTID:362429007 xref: TAO:0000605 xref: ZFA:0000605 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png is_a: UBERON:0006127 ! funiculus of spinal cord [Term] id: UBERON:0002181 name: substantia gelatinosa namespace: uberon alt_id: UBERON:FMA_74019-MA_0001124 def: "Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells." [MESH:A.08.186.854.610.800, Wikipedia:Substantia_gelatinosa] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central gelatinous substance of spinal cord" EXACT [] synonym: "gelatinous substance of Rolando" EXACT [FMA:74019] synonym: "gelatinous substance of dorsal horn of spinal cord" EXACT [] synonym: "gelatinous substance of posterior horn of spinal cord" EXACT [] synonym: "substantia gelatinosa cornu posterioris medullae spinalis" EXACT [FMA:74019, FMA:TA] xref: EV:0100318 xref: FMA:74019 xref: GAID:701 xref: MA:0001124 xref: MESH:A.08.186.854.610.800 xref: ncithesaurus:Substantia_Gelatinosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002182 name: main bronchus namespace: uberon alt_id: UBERON:FMA_7405-MA_0000438 def: "The trachea (windpipe) divides into two main bronchi." [Wikipedia:Main_bronchus] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bronchus principalis" EXACT [] synonym: "mainstem bronchus" EXACT [] synonym: "primary bronchus" EXACT [] synonym: "principal bronchus" EXACT [] xref: EFO:0000932 xref: EHDAA2:0001044 xref: EHDAA:3072 xref: EMAPA:16849 xref: FMA:7405 xref: MA:0000438 xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA xref: SCTID:245508000 xref: VHOG:0000370 xref: ncithesaurus:Main_Bronchus is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0002183 name: lobar bronchus namespace: uberon alt_id: UBERON:FMA_7406-MA_0000437 def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [GO:0060482, Wikipedia:Lobar_bronchus] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "secondary bronchus" EXACT [] xref: EHDAA:4955 xref: EHDAA:4963 xref: EHDAA:4977 xref: EHDAA:4985 xref: EHDAA:4993 xref: EHDAA:8175 xref: EHDAA:8187 xref: EHDAA:8203 xref: EHDAA:8213 xref: EHDAA:8225 xref: EMAPA:17388 xref: EMAPA:17982 xref: EMAPA:17987 xref: EMAPA:17992 xref: EMAPA:17998 xref: FMA:7406 xref: MA:0000437 xref: OpenCyc:Mx4rwQMLXJwpEbGdrcN5Y29ycA xref: SCTID:245509008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg xref: ncithesaurus:Lobar_Bronchus is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0000101 ! lobe of lung [Term] id: UBERON:0002184 name: segmental bronchus namespace: uberon alt_id: UBERON:FMA_7407-MA_0000439 def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [Wikipedia:Segmental_bronchus] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tertiary bronchus" EXACT [] xref: EHDAA:7043 xref: EHDAA:7049 xref: EHDAA:7058 xref: EHDAA:7064 xref: EHDAA:7070 xref: FMA:7407 xref: MA:0000439 xref: OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA xref: SCTID:245513001 xref: VHOG:0001446 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg xref: ncithesaurus:Segmental_Bronchus is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0000101 ! lobe of lung [Term] id: UBERON:0002185 name: bronchus namespace: uberon alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121 def: "A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bronchi" EXACT PLURAL [] synonym: "bronchial tissue" RELATED [BTO:0001340] synonym: "bronchial trunk" EXACT [] xref: BTO:0001340 xref: EFO:0000932 xref: EV:0100041 xref: FMA:7409 xref: GAID:346 xref: MA:0000436 xref: MAT:0000133 xref: MESH:A.04.411.125 xref: MIAA:0000133 xref: SCTID:181215002 xref: VHOG:0000262 xref: XAO:0000121 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Respiratory_system_complete_numbered.svg/200px-Respiratory_system_complete_numbered.svg.png xref: ncithesaurus:Bronchus is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity organ relationship: part_of UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0007196 ! tracheobronchial tree [Term] id: UBERON:0002186 name: bronchiole namespace: uberon alt_id: UBERON:FMA_7410-MA_0000422 def: "the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bronchiolus" RELATED [BTO:0002375] synonym: "lobular bronchiole" EXACT [FMA:7410] xref: BTO:0002375 xref: EHDAA:8171 xref: EHDAA:8183 xref: EHDAA:8199 xref: EHDAA:8221 xref: FMA:7410 xref: MA:0000422 xref: OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA xref: SCTID:278982001 xref: VHOG:0000675 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: ncithesaurus:Bronchiole is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0007196 ! tracheobronchial tree [Term] id: UBERON:0002187 name: terminal bronchiole namespace: uberon alt_id: UBERON:FMA_7411-MA_0000424 def: "A terminal bronchiole is a bronchiole at the end of the conducting zone. At the transition into the respiratory zone, alveoli become present. The terminal bronchiole is the most distal segment of the conducting zone. Each of the terminal bronchioles divides to form respiratory bronchioles which contain a small number of alveoli. Terminal bronchioles are lined with simple cuboidal epithelium containing Clara cells. Terminal bronchioles contain a limited number of ciliated cells and no goblet cells. Clara cells are non-ciliated, rounded protein secreting cells. Their secretions are a nonsticky, proteinaceous compound to maintain the airway in the smallest bronchioles. The secretion, called surfactant, reduces surface tension allowing for bronchioles to expand during inspiration and keeping the bronchioles from collapsing during expiration. Clara cells, a stem cell of the respiratory system, produce enzymes that detoxify substances dissolved in the respiratory fluid. [WP,unvetted]." [Wikipedia:Terminal_bronchiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bronchiolus terminalis" EXACT [] xref: BTO:0003223 xref: FMA:7411 xref: MA:0000424 xref: OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA xref: SCTID:278981008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: ncithesaurus:Terminal_Bronchiole is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0002188 name: respiratory bronchiole namespace: uberon alt_id: UBERON:FMA_7412-MA_0000423 def: "The respiratory bronchioles are interrupted by alveoli which are thin walled evaginations. Alveolar ducts are distal continuations of the respiratory bronchioles. [WP,unvetted]." [Wikipedia:Respiratory_bronchiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "bronchiolus respiratorius" EXACT [] xref: BTO:0003222 xref: FMA:7412 xref: MA:0000423 xref: OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA xref: SCTID:128517006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: ncithesaurus:Respiratory_Bronchiole is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0002189 name: outer cortex of kidney namespace: uberon alt_id: UBERON:FMA_74285-MA_0001649 comment: This class was created automatically from a combination of ontologies synonym: "outer renal cortex" EXACT [] xref: FMA:74285 xref: MA:0001649 is_a: UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0002190 name: subcutaneous adipose tissue namespace: uberon alt_id: UBERON:FMA_74315-MA_0000473 synonym: "fatty layer of subcutaneous tissue" EXACT [FMA:74315] synonym: "panniculus adiposus (tela subcutanea)" EXACT [FMA:74315, FMA:TA] synonym: "panniculus adiposus telae subcutaneae" EXACT [FMA:74315, FMA:TA] xref: BTO:0004042 xref: FMA:74315 xref: MA:0000473 is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0002191 name: subiculum namespace: uberon alt_id: UBERON:FMA_74414-MA_0000960 def: "The subiculum is the most inferior component of the hippocampal formation. It lies between the entorhinal cortex and the CA1 subfield of the hippocampus proper. It receives input from CA1 and entorhinal cortical layer III pyramidal neurons and is the main output of the hippocampus. The pyramidal neurons send projections to the nucleus accumbens, septal nuclei, prefrontal cortex, lateral hypothalamus, nucleus reuniens, mammillary nuclei, entorhinal cortex and amygdala. The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction. [WP,unvetted]." [Wikipedia:Subiculum] comment: ABA:SUB is part of the retrohippocampal region, along with the entorhinal area. this is in the hippocampal formation but not the hippocampal region subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gyrus parahippocampalis" RELATED [BTO:0003087] synonym: "subicular cortex" EXACT [NIF_GrossAnatomy:birnlex_1305] synonym: "subiculum cornu ammonis" RELATED [BTO:0003087] synonym: "subiculum hippocampi" EXACT [FMA:74414] xref: ABA:SUB xref: BM:Tel-Cx-SB xref: BTO:0003087 xref: FMA:74414 xref: MA:0000960 xref: NIF_GrossAnatomy:birnlex_1305 xref: SCTID:369097009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg xref: ncithesaurus:Subiculum is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002421 ! hippocampal formation property_value: "spatially_disjoint_from" UBERON:0001953 property_value: "spatially_disjoint_from" UBERON:0002728 property_value: "spatially_disjoint_from" UBERON:0004683 [Term] id: UBERON:0002192 name: choroidal fissure namespace: uberon alt_id: UBERON:FMA_74512-MA_0001305-XAO_0000474-ZFA_0001075 def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]." [ISBN:0815318960, ZFA:0001075] comment: Usage notes: not to be confused with optic fissure. the choroidal fissure is a subarachnoid space (via subarachnoid fissure in FMA). AO notes: Most ontologies appear to have switched to using less confusing primary terms for optic and choroidal fissues. Still need to check FMA - two possible terms? CARO notes: is this a groove or a space or a line? Structure notes: relate to lateral ventricle? subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "chorioid fissure" RELATED [FMA:74512] synonym: "choroid fissure" RELATED INCONSISTENT [FMA:74512, TAO:0001075] synonym: "choroid invagination" RELATED [EHDAA2:0000250] synonym: "choroidal fissure of lateral ventricle" EXACT [FMA:83715] synonym: "lateral ventricle choroid fissure" EXACT [EHDAA2:0000250] xref: EHDAA2:0000250 xref: FMA:74512 xref: FMA:83715 xref: TAO:0001075 xref: ZFA:0001075 xref: ncithesaurus:Choroidal_Fissure is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005358 ! ventricle of nervous system relationship: part_of UBERON:0000955 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! brain disjoint_from: UBERON:0005412 ! optic fissure [Term] id: UBERON:0002193 name: hemolymphoid system namespace: uberon alt_id: UBERON:FMA_74562-MA_0000013 def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." [] synonym: "haemolymphoid system" RELATED [] synonym: "hematolymphoid system" EXACT [] synonym: "lymphomyeloid complex" EXACT [] xref: EHDAA2:0004615 xref: EMAPA:18534 xref: EMAPA:18765 xref: FMA:74562 xref: MA:0000013 is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0002194 name: capsule of lymph node namespace: uberon alt_id: UBERON:FMA_74604-MA_0000739 def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]." [Wikipedia:Lymph_node_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lymph node capsule" EXACT [] xref: FMA:74604 xref: MA:0000739 xref: SCTID:327532004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Lymphknoten_%28Schwein%29.jpg/200px-Lymphknoten_%28Schwein%29.jpg xref: ncithesaurus:Lymph_Node_Capsule is_a: UBERON:0003893 ! capsule [Term] id: UBERON:0002195 name: trabecula of lymph node namespace: uberon alt_id: UBERON:FMA_74605-MA_0000746 def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae] comment: This class was created automatically from a combination of ontologies synonym: "lymph node trabecula" EXACT [] synonym: "lymph node trabeculum" EXACT [] xref: FMA:74605 xref: MA:0000746 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray598.png/200px-Gray598.png xref: ncithesaurus:Lymph_Node_Trabecula is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002196 name: adenohypophysis namespace: uberon alt_id: UBERON:FMA_74627-MA_0000177-ZFA_0001282 def: "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish[ZFA]." [Wikipedia:Adenohypophysis, ZFIN:curator] comment: note that BTO may contain an error here. Also note we may need to introduce taxon-specific developmental relationships: \"While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathkebs pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head\"[NBK53175] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior hypophysis" EXACT [ZFA:0001282] synonym: "anterior lobe (hypophysis)" EXACT [] synonym: "anterior lobe of hypophysis" EXACT [] synonym: "anterior lobe of pituitary" EXACT [] synonym: "anterior lobe of pituitary gland" EXACT [] synonym: "anterior pituitary" EXACT [] synonym: "anterior pituitary gland" RELATED [BTO:0000040] synonym: "lobus anterior (glandula pituitaria)" EXACT [FMA:74627, FMA:TA] synonym: "lobus anterior hypophysis" EXACT [FMA:74627, FMA:TA] synonym: "pituitary gland, anterior lobe" EXACT [] xref: AAO:0010540 xref: BM:AHy xref: BTO:0000040 xref: BTO:0000496 xref: EFO:0000230 xref: EHDAA2:0000109 xref: EMAPA:17514 xref: FMA:74627 xref: MA:0000177 xref: MESH:A.06.407.747.608 xref: NIF_GrossAnatomy:birnlex_1581 xref: SCTID:245532007 xref: TAO:0001282 xref: VHOG:0000141 xref: ZFA:0001282 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png xref: ncithesaurus:Anterior_Lobe_of_the_Pituitary_Gland is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: UBERON:0002197 name: median eminence of neurohypophysis namespace: uberon alt_id: UBERON:FMA_74634-MA_0000859 def: "The median eminence is part of the inferior boundary for the hypothalamus part of the human brain. A small swelling on the tuber cinereum posterior to the infundibulum - atop the pituitary stalk - the median eminence lies in the area roughly bounded on its posterolateral region by the cerebral peduncles, and on its anterolateral region by the optic chiasm. The median eminence is one of the seven areas of the brain devoid of a blood-brain barrier. [WP,unvetted]." [Wikipedia:Median_eminence] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "eminentia mediana hypothalami" EXACT [FMA:74634, FMA:TA] synonym: "median eminence" EXACT [] synonym: "median eminence of hypothalamus" EXACT [] synonym: "median eminence of posterior lobe of pituitary gland" EXACT [] synonym: "median eminence of tuber cinereum" EXACT [] xref: AAO:0010539 xref: BM:ME xref: BTO:0001954 xref: EHDAA2:0001080 xref: EHDAA:7540 xref: EMAPA:17521 xref: FMA:74634 xref: GAID:463 xref: MA:0000859 xref: MESH:A.06.407.747.734.500 xref: NIF_GrossAnatomy:birnlex_925 xref: SCTID:369121004 xref: VHOG:0001179 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0002784 ! regional part of diencephalon is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005408 ! circumventricular organ relationship: part_of UBERON:0002198 ! neurohypophysis [Term] id: UBERON:0002198 name: neurohypophysis namespace: uberon alt_id: UBERON:FMA_74636-ZFA_0001271 def: "comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]." [Wikipedia:Neurohypophysis] comment: Editor note - request magnocellular cell from CL. Request oxytocin secretion from GO. Notes: \"The hypophysis or pituitary gland is derived, in part from an ectodermal outpocketing of the stomodeum (Rathke's Pouch) and in part from the floor of the diencephalon\" [http://syllabus.med.unc.edu/courseware/embryo_images/] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "infundibular process" EXACT [FMA:74628] synonym: "lobus nervosus neurohypophysis" EXACT [FMA:74628, FMA:TA] synonym: "lobus posterior (glandula pituitaria)" EXACT [FMA:74628, FMA:TA] synonym: "lobus posterior hypophysis" EXACT [FMA:74628, FMA:TA] synonym: "neural lobe" EXACT [FMA:74628] synonym: "neural lobe of pituitary" EXACT [NIF_GrossAnatomy:birnlex_1586] synonym: "neural lobe of pituitary gland" EXACT [FMA:74628] synonym: "neurohypophysis" EXACT [] synonym: "pituitary gland, posterior lobe" EXACT [] synonym: "posterior lobe of pituitary" EXACT [] synonym: "posterior lobe of pituitary gland" EXACT [FMA:74628] synonym: "posterior pituitary" EXACT [] synonym: "posterior pituitary gland" RELATED [BTO:0000937] xref: AAO:0010537 xref: BM:NY xref: BTO:0000937 xref: EHDAA2:0001271 xref: EHDAA:7536 xref: EMAPA:17519 xref: FMA:74628 xref: MA:0000178 xref: MESH:A.06.407.747.734 xref: NIF_GrossAnatomy:birnlex_1586 xref: SCTID:245527006 xref: TAO:0001271 xref: VHOG:0000142 xref: ZFA:0001271 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG xref: ncithesaurus:Posterior_Lobe_of_the_Pituitary_Gland is_a: UBERON:0002784 ! regional part of diencephalon is_a: UBERON:0003296 ! gland of diencephalon is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010134 ! secretory circumventricular organ relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: UBERON:0002199 name: integument namespace: uberon alt_id: UBERON:FMA_74657-ZFA_0000368 def: "The dermis, epidermis and hypodermis." [Wikipedia:Integument] comment: in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Hautsystem" RELATED [BTO:0000634] synonym: "dermal system" RELATED [BTO:0000634] synonym: "dermoid system" RELATED [BTO:0000634] synonym: "integumentum commune" EXACT [FMA:74657, FMA:TA] synonym: "skin" RELATED [] synonym: "tegument" RELATED [BTO:0000634] synonym: "the integument" EXACT [FMA:74657] xref: AAO:0000239 xref: BTO:0000634 xref: EHDAA2:0001844 xref: FMA:74657 xref: MESH:A.17.815 xref: TAO:0000368 xref: VAO:0000029 xref: ZFA:0000368 xref: galen:Integument is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0002200 name: vasculature of head namespace: uberon alt_id: UBERON:FMA_74710-ZFA_0001267 def: "A vasculature that is part of a head [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adult head vascular network" EXACT [OBOL:automatic] synonym: "adult head vasculature" EXACT [OBOL:automatic] synonym: "cranial vasculature" EXACT [] synonym: "head vascular network" EXACT [OBOL:automatic] synonym: "head vasculature" RELATED [] synonym: "vascular network of adult head" EXACT [OBOL:automatic] synonym: "vascular network of head" EXACT [OBOL:automatic] synonym: "vasculature of adult head" EXACT [OBOL:automatic] xref: EFO:0003656 xref: FMA:74710 xref: TAO:0001267 xref: XAO:0004152 xref: ZFA:0001267 is_a: UBERON:0002049 ! vasculature is_a: UBERON:0001981 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! blood vessel relationship: part_of UBERON:0001444 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! subdivision of head [Term] id: UBERON:0002201 name: vasculature of trunk namespace: uberon alt_id: UBERON:FMA_74712-ZFA_0005024 def: "A vasculature that is part of a trunk [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "torso vascular network" EXACT [OBOL:automatic] synonym: "torso vasculature" EXACT [OBOL:automatic] synonym: "trunk vascular network" EXACT [OBOL:automatic] synonym: "trunk vasculature" EXACT [] synonym: "vascular network of torso" EXACT [OBOL:automatic] synonym: "vascular network of trunk" EXACT [OBOL:automatic] synonym: "vasculature of torso" EXACT [OBOL:automatic] xref: FMA:74712 xref: TAO:0005024 xref: ZFA:0005024 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0002202 name: submucosa of trachea namespace: uberon alt_id: UBERON:FMA_7472-MA_0001860 comment: This class was created automatically from a combination of ontologies synonym: "submucosa of windpipe" EXACT [OBOL:automatic] synonym: "trachea submucosa" EXACT [] synonym: "tracheal submucosa" EXACT [] synonym: "windpipe submucosa" EXACT [OBOL:automatic] xref: BTO:0002115 xref: FMA:7472 xref: MA:0001860 xref: SCTID:4419000 xref: ncithesaurus:Trachea_Submucosa is_a: UBERON:0000009 ! submucosa is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa is_a: UBERON:0009644 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! trachea non-cartilage connective tissue [Term] id: UBERON:0002203 name: vasculature of eye namespace: uberon alt_id: UBERON:FMA_74743-ZFA_0007057 def: "Vasculature that is part of the eye region." [OBOL:automatic, https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726] comment: not part of the eye in ZFA. Note this changed to a blood vessel in ZFA subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "eye vascular network" EXACT [OBOL:automatic] synonym: "eye vasculature" RELATED [] synonym: "ocular blood vessel" EXACT [ZFA:0007057] synonym: "ocular vasculature" EXACT [] synonym: "optic vasculature" RELATED [] synonym: "vascular network of eye" EXACT [OBOL:automatic] xref: FMA:74743 xref: SCTID:123846009 xref: ZFA:0007057 is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0001981 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blood vessel relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0002204 name: musculoskeletal system namespace: uberon alt_id: UBERON:FMA_7482-MA_0002418-XAO_0000168 def: "Anatomical system that provides locomotion and physical support to the organism." [Wikipedia:Musculoskeletal_system, XB:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "musculo-skeletal system" EXACT [] xref: AAO:0010546 xref: EV:0100139 xref: FMA:7482 xref: GAID:98 xref: MA:0002418 xref: MESH:A.02 xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g xref: SCTID:278858007 xref: VHOG:0001275 xref: XAO:0000168 xref: ncithesaurus:Musculoskeletal_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! mesoderm-derived structure disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002205 name: manubrium of sternum namespace: uberon alt_id: UBERON:FMA_7486-ZFA_0001601 def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium] comment: not to be confused with manubrium of eardrum. todo - find reference to support disjointness assertion with teleost subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "manubrium" BROAD [] synonym: "manubrium of sternum" EXACT [] synonym: "manubrium sterni" EXACT [EMAPA:18723] synonym: "sternal manubrium" EXACT [MA:0001332] xref: AAO:0000680 xref: EMAPA:18723 xref: FMA:7486 xref: GAID:247 xref: MA:0001332 xref: MESH:A.02.835.232.904.766.442 xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA xref: SCTID:182014008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray116.png/200px-Gray116.png xref: ncithesaurus:Sternal_Manubrium is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0005181 ! thoracic segment organ relationship: part_of UBERON:0000975 ! sternum disjoint_from: UBERON:0006722 ! manubrium of malleus [Term] id: UBERON:0002206 name: mammillary body namespace: uberon alt_id: UBERON:FMA_74877-MA_0000174 def: "The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]." [Wikipedia:Mammillary_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "corpus mamillare" EXACT [ZFA:0000334] synonym: "mamillary body" EXACT [] xref: ABA:MBO xref: FMA:74877 xref: GAID:652 xref: MA:0000174 xref: MESH:A.08.186.211.730.385.357.362.500 xref: NIF_GrossAnatomy:birnlex_865 xref: SCTID:279306001 xref: ZFA:0000334 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png xref: ncithesaurus:Mamillary_Body is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001894 ! diencephalon property_value: "spatially_disjoint_from" UBERON:0001935 property_value: "spatially_disjoint_from" UBERON:0002035 property_value: "spatially_disjoint_from" UBERON:0002634 property_value: "spatially_disjoint_from" UBERON:0002706 [Term] id: UBERON:0002207 name: xiphoid process namespace: uberon alt_id: UBERON:FMA_7488-MA_0001884 def: "The xiphoid process, also known as the xiphisternum, is a small cartilaginous extension to the lower part of the sternum which is usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. [WP,unvetted]." [Wikipedia:Xiphoid_process, https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376] comment: this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "metasternum" RELATED [Wikipedia:Xiphoid_process] synonym: "processus xiphoideus" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphisternum" EXACT [Wikipedia:Xiphoid_process] synonym: "xiphoid" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphoid process" EXACT [FMA:7488, Wikipedia:Xiphoid_process] synonym: "xiphoid process of sternum" EXACT [] synonym: "xiphoideus" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphosternal junction" RELATED [Wikipedia:Xiphoid_process] synonym: "xyphoid" RELATED [Wikipedia:Xiphoid_process] xref: FMA:7488 xref: MA:0001334 xref: SCTID:272711000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray117.png/200px-Gray117.png xref: ncithesaurus:Xiphoid_Process is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0002208 name: sternebra namespace: uberon alt_id: UBERON:FMA_7489-MA_0001333 def: "one of the bony segments of the sternum[TFD]." [Wikipedia:Sternebra, http://medical-dictionary.thefreedictionary.com/sternebra] comment: Note that some definitions state that this a segment of the primordial sternum. We classify this under skeletal element, we are neutral as to whether these are bones or segments (fused bone) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sternebral bone" RELATED [EMAPA:18724] xref: EMAPA:18724 xref: FMA:7489 xref: MA:0001333 xref: SCTID:95955004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0005181 ! thoracic segment organ relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0002209 name: fibrous joint namespace: uberon alt_id: UBERON:FMA_7492-MA_0000321 def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]" [FMA:FMA, Wikipedia:Fibrous_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "articulatio fibrosa" EXACT [] xref: AEO:0000178 xref: EHDAA2:0003178 xref: FMA:7492 xref: MA:0000321 xref: SCTID:37772004 xref: ZFA:0005156 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0002210 name: syndesmosis namespace: uberon alt_id: UBERON:FMA_7494-MA_0001500 def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA]" [FMA:FMA, Wikipedia:Syndesmosis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:7494 xref: MA:0001500 xref: SCTID:89358004 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002211 name: nerve root namespace: uberon alt_id: UBERON:FMA_74941-ZFA_0001328 comment: we make nerve root continuous_with nerve to avoid inconsistencies with the spatial disjointness constraint between PNS and CNS, with nerves part_of CNS. FMA has segment of nerve with subtypes: segment of sympathetic trunk, nerve root, nerve rootlet, nerve root proper subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000883 xref: FMA:5981 xref: SCTID:362295007 xref: ncithesaurus:Nerve_Root is_a: UBERON:0000063 ! organ segment [Term] id: UBERON:0002212 name: macula of saccule of membranous labyrinth namespace: uberon alt_id: UBERON:FMA_74944-MA_0001201 def: "The saccule is the smaller of the two vestibular sacs; it is globular in form, and lies in the recessus sphC&ricus near the opening of the scala vestibuli of the cochlea. Its anterior part exhibits an oval thickening, the macula of saccule (or saccular macula), to which are distributed the saccular filaments of the acoustic nerve. [WP,unvetted]." [Wikipedia:Macula_of_saccule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "macula of saccule" EXACT [] synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula saccule" EXACT [ZFA:0007000] synonym: "macula sacculi" EXACT [FMA:74944, FMA:TA] synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic] synonym: "saccular macula" EXACT [ZFA:0007000] synonym: "saccular macula of membranous labyrinth" EXACT [] synonym: "saccular maculs" RELATED [] synonym: "saccule macula" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: FMA:74944 xref: MA:0001201 xref: SCTID:362572004 xref: XAO:0004136 xref: ZFA:0007000 xref: ncithesaurus:Macula_of_Saccule is_a: UBERON:0000054 ! macula is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0002213 name: cartilaginous joint namespace: uberon alt_id: UBERON:FMA_7496-MA_0000320 def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA]" [FMA:FMA, Wikipedia:Cartilaginous_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "articulatio cartilaginea" EXACT [] xref: FMA:7496 xref: MA:0000320 xref: SCTID:58442004 xref: ZFA:0005155 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0002214 name: macula of utricle of membranous labyrinth namespace: uberon alt_id: UBERON:FMA_74960-MA_0001203 def: "The portion of the utricle which is lodged in the recess forms a sort of pouch or cul-de-sac, the floor and anterior wall of which are thickened, and form the macula of utricle (or utricular macula), which receives the utricular filaments of the vestibulocochlear nerve. [WP,unvetted]." [Wikipedia:Macula_of_utricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "macula of utricle" EXACT [] synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula utricle" EXACT [ZFA:0000030] synonym: "macula utriculi" EXACT [FMA:74960, FMA:TA] synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic] synonym: "utricle macula" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "utricular macula" RELATED [] synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: EFO:0003474 xref: FMA:74960 xref: MA:0001203 xref: SCTID:362568003 xref: ZFA:0000030 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg xref: ncithesaurus:Macula_of_Utricle is_a: UBERON:0000054 ! macula is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0002215 name: synchondrosis namespace: uberon alt_id: UBERON:FMA_7497-MA_0001501 def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA]" [FMA:FMA, Wikipedia:Synchondrosis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cartilago epiphysialis" EXACT [FMA:7497, FMA:TA] synonym: "epiphysial cartilage" EXACT [] synonym: "primary cartilaginous joint" EXACT [] xref: FMA:7497 xref: MA:0001501 xref: SCTID:42903008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray297.png/200px-Gray297.png is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002216 name: symphysis namespace: uberon alt_id: UBERON:FMA_7498-MA_0001504 def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis] comment: Editors note: consider adding fibrocartilage class subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "secondary cartilaginous joint" EXACT [FMA:7498] xref: FMA:7498 xref: MA:0001504 xref: SCTID:1584001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray298.png/200px-Gray298.png is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002217 name: synovial joint namespace: uberon alt_id: UBERON:FMA_7501-MA_0000322 def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]" [FMA:FMA, Wikipedia:Synovial_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "articulatio synoviale" EXACT [] synonym: "diarthrodial joints" RELATED [ZFA:0005153] synonym: "diarthroses" EXACT [ZFA:0005153] xref: AEO:0000183 xref: EHDAA2:0003183 xref: FMA:7501 xref: MA:0000322 xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA xref: SCTID:113234001 xref: ZFA:0005153 xref: galen:SynovialJoint is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0002218 name: tympanic ring namespace: uberon alt_id: UBERON:FMA_75053-MA_0001225 def: "a C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mam- mals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]." [MP:0000030, PMID:11237469] comment: AO notes: in FMA, the tympanic ring is an anatomical line. Howevever PMID:11237469 states: \"the tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane\". Taxon notes: check amphibians - in AAO \"Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane\". Gene notes: Gsc and Prx1 are essential for tympanic ring development xref: AAO:0000615 xref: EMAPA:19197 xref: MA:0001225 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003457 ! head bone relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0002219 name: subfornical organ namespace: uberon alt_id: UBERON:FMA_75260-MA_0000940 def: "Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Munro in the third ventricle (adapted from Wikipedia via NIF)." [NIF_GrossAnatomy:nlx_anat_100314, Wikipedia:Subfornical_organ] comment: Function notes: induces drinking behavior after stimulation with angiotensin II[MESH]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: ABA:SFO xref: FMA:75260 xref: GAID:795 xref: MA:0000940 xref: MESH:A.08.713.840 xref: NIF_GrossAnatomy:nlx_anat_100314 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png is_a: UBERON:0002663 ! septal nuclear complex is_a: UBERON:0010135 ! sensory circumventricular organ property_value: "spatially_disjoint_from" UBERON:0001934 property_value: "spatially_disjoint_from" UBERON:0002034 property_value: "spatially_disjoint_from" UBERON:0002625 property_value: "spatially_disjoint_from" UBERON:0002689 property_value: "spatially_disjoint_from" UBERON:0002690 property_value: "spatially_disjoint_from" UBERON:0007626 [Term] id: UBERON:0002221 name: fontanelle namespace: uberon alt_id: UBERON:FMA_75438-MA_0001465 def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [Wikipedia:Fontanelle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "fontanel" EXACT [] xref: FMA:75438 xref: MA:0001465 xref: TAO:0001738 xref: ZFA:0005536 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png xref: ncithesaurus:Fontanelle is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0002222 name: perichondrium namespace: uberon alt_id: UBERON:FMA_75446-ZFA_0001634 def: "Fibrous connective tissue that surrounds cartilage." [VAO:0000036, Wikipedia:Perichondrium, https://github.com/cmungall/uberon/issues/26] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cartilage connective tissue" RELATED [] synonym: "perichondral region of cartilage" RELATED [] synonym: "perichondral region of cartilage element" RELATED [] xref: AAO:0010445 xref: BTO:0005089 xref: FMA:75446 xref: MA:0003008 xref: SCTID:11881003 xref: TAO:0001643 xref: VAO:0000036 xref: XAO:0004049 xref: ZFA:0001634 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0002223 name: endolymphatic sac namespace: uberon alt_id: UBERON:FMA_75639-MA_0001188 def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [Wikipedia:Endolymphatic_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000441 xref: EHDAA:7761 xref: EMAPA:17593 xref: FMA:75639 xref: GAID:887 xref: MA:0001188 xref: MESH:A.09.246.631.909.957.360.701 xref: SCTID:279810008 xref: VHOG:0000791 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002049 ! vasculature relationship: part_of UBERON:0007811 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! craniocervical region [Term] id: UBERON:0002224 name: thoracic cavity namespace: uberon alt_id: UBERON:FMA_7565-MA_0000032 def: "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cavity of chest" EXACT [] synonym: "cavity of thorax" EXACT [] synonym: "chest cavity" EXACT [] synonym: "pectoral cavity" EXACT [] synonym: "space of thoracic compartment" EXACT [FMA:7565] xref: FMA:7565 xref: GAID:93 xref: MA:0000032 xref: MESH:A.01.911.800 xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA xref: SCTID:243949006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png xref: ncithesaurus:Thoracic_Cavity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0002225 name: costal arch namespace: uberon alt_id: UBERON:FMA_7569-MA_0001396 def: "The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs -- specifically, from the eighth rib to the tenth rib." [Wikipedia:Costal_margin] comment: todo - split? check part_of relationship synonym: "arcus costae" RELATED [Wikipedia:Costal_margin] synonym: "costal margin" RELATED [Wikipedia:Costal_margin] synonym: "subcostal arch" RELATED [Wikipedia:Costal_margin] xref: FMA:7569 xref: FMA:7570 xref: MA:0001396 xref: SCTID:367767002 xref: ncithesaurus:Costal_Arch is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002226 name: basilar membrane of cochlea namespace: uberon alt_id: UBERON:FMA_75706-MA_0001190 def: "a stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [Wikipedia:Basilar_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "basilar membrane" EXACT [] xref: FMA:75706 xref: GAID:872 xref: MA:0001190 xref: MESH:A.09.246.631.246.125 xref: NIF_GrossAnatomy:birnlex_2521 xref: SCTID:362574003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Organ_of_corti.svg/200px-Organ_of_corti.svg.png xref: ncithesaurus:Basilar_Membrane is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002227 name: spiral organ of cochlea namespace: uberon alt_id: UBERON:FMA_75715-MA_0001193 def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti] comment: Todo - check XAO, taxon constraints subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Corti's organ" RELATED [BTO:0001691] synonym: "basilar papilla" RELATED [BTO:0001691] synonym: "cochlear spiral organ" EXACT [] synonym: "organ of corti" RELATED [] synonym: "organum spirale" RELATED [BTO:0001691] synonym: "spiral organ" EXACT [] synonym: "spiral organ of corti" EXACT [] xref: AAO:0011018 xref: BTO:0001691 xref: EFO:0001364 xref: EMAPA:19061 xref: EMAPA:19151 xref: EV:0100364 xref: FMA:75715 xref: GAID:772 xref: MA:0001193 xref: NIF_GrossAnatomy:birnlex_2526 xref: XAO:0003145 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png xref: ncithesaurus:Organ_of_Corti xref: ncithesaurus:Spiral_Organ_of_Corti is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002228 name: rib namespace: uberon alt_id: UBERON:FMA_7574-MA_0000315-ZFA_0000538 def: "An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body." [Wikipedia:Rib, ZFIN:curator] comment: Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as \"true ribs\", are directly attached to the sternum through the costal cartilage. The following five sets are known as \"false ribs\", three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals.[1] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal rib" RELATED [] synonym: "pleural rib" RELATED [] xref: AAO:0000545 xref: EFO:0003066 xref: EMAPA:18010 xref: FMA:7574 xref: GAID:245 xref: MA:0000315 xref: MESH:A.02.835.232.904.567 xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA xref: SCTID:302523002 xref: TAO:0000538 xref: VHOG:0001154 xref: ZFA:0000538 xref: galen:Rib xref: ncithesaurus:Rib is_a: UBERON:0002495 ! long bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003459 ! chest bone is_a: UBERON:0004247 ! back bone relationship: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0002229 name: interparietal bone namespace: uberon alt_id: UBERON:FMA_75748-MA_0001467 def: "the bone of the cranium that lies above and anterior to the occipital bone in some mammals." [MP:0000077] comment: This class was created automatically from a combination of ontologies synonym: "inter-parietal bone" EXACT [EMAPA:19017] synonym: "interparietal" EXACT [EHDAA:9530] synonym: "post-parietal bone" RELATED [VHOG:0001327] synonym: "postparietal" RELATED [VHOG:0001327] synonym: "postparietal bone" RELATED [VHOG:0001327] xref: EHDAA:9530 xref: EMAPA:19017 xref: FMA:75748 xref: MA:0001467 xref: SCTID:369438005 xref: VHOG:0001327 is_a: UBERON:0001474 ! bone is_a: UBERON:0004766 ! cranial bone is_a: UBERON:0003465 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! chondrocranium bone relationship: part_of UBERON:0003128 ! cranium property_value: "homologous_to" ZFA:0000486 [Term] id: UBERON:0002230 name: head of rib namespace: uberon alt_id: UBERON:FMA_7575-MA_0001415 def: "The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with. It is marked by a kidney-shaped articular surface, divided by a horizontal crest into two facets for articulation with the depression formed on the bodies of two adjacent thoracic vertebrae; the upper facet is the smaller; to the crest is attached the interarticular ligament. [WP,unvetted]." [Wikipedia:Head_of_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "rib head" EXACT [] xref: FMA:7575 xref: MA:0001415 xref: SCTID:263358001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray122.png/200px-Gray122.png xref: ncithesaurus:Rib_Head is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005174 ! back organ is_a: UBERON:0005175 ! chest organ is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002231 name: body of rib namespace: uberon alt_id: UBERON:FMA_7577-MA_0001416 comment: This class was created automatically from a combination of ontologies synonym: "rib body" EXACT [] synonym: "rib shaft" EXACT [] synonym: "shaft of rib" EXACT [] xref: FMA:7577 xref: MA:0001416 xref: SCTID:263361000 xref: ncithesaurus:Rib_Shaft is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002232 name: olfactory gland namespace: uberon alt_id: UBERON:FMA_75801-MA_0000287 def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles.[2] Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [Wikipedia:Olfactory_glands] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "Bowman's gland" RELATED [] synonym: "olfactory gland of Bowman" EXACT [] xref: AAO:0010162 xref: BTO:0001697 xref: FMA:75801 xref: MA:0000287 xref: SCTID:368891001 is_a: UBERON:0002530 ! gland is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001997 ! olfactory epithelium [Term] id: UBERON:0002233 name: tectorial membrane of cochlea namespace: uberon alt_id: UBERON:FMA_75805-MA_0001199 def: "." [Wikipedia:Tectorial_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tectorial membrane" EXACT [] synonym: "tectorial membrane of spiral organ of cochlea" EXACT [] xref: FMA:75805 xref: GAID:876 xref: MA:0001199 xref: MESH:A.09.246.631.246.292.906 xref: NIF_GrossAnatomy:birnlex_2531 xref: SCTID:368960006 xref: ncithesaurus:Tectorial_Membrane is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002234 name: proximal phalanx of finger namespace: uberon alt_id: UBERON:FMA_75816-MA_0001395 def: "A proximal phalanx that is part of a finger [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "hand proximal phalanx" EXACT [MA:0001395] synonym: "proximal phalanx of hand" EXACT [] xref: FMA:75816 xref: MA:0001395 xref: SCTID:181986000 xref: ncithesaurus:Proximal_Phalanx_of_Hand is_a: UBERON:0001436 ! phalanx of finger is_a: UBERON:0004302 ! proximal phalanx [Term] id: UBERON:0002235 name: tubercle of rib namespace: uberon alt_id: UBERON:FMA_7583-MA_0001417 def: "The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]." [Wikipedia:Tubercle_(rib)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "rib tubercle" EXACT [] xref: FMA:7583 xref: MA:0001417 xref: SCTID:361104005 xref: ncithesaurus:Rib_Tubercle is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005813 ! tubercle [Term] id: UBERON:0002236 name: costal cartilage namespace: uberon alt_id: UBERON:FMA_7591-MA_0000106 def: "The costal cartilages are bars of hyaline cartilage which serve to prolong the ribs forward and contribute very materially to the elasticity of the walls of the thorax. [WP,unvetted]." [Wikipedia:Costal_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:7591 xref: MA:0000106 xref: OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA xref: SCTID:244703004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png xref: ncithesaurus:Costal_Cartilage is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003572 ! chest connective tissue is_a: UBERON:0004267 ! back connective tissue relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002237 name: true rib namespace: uberon alt_id: UBERON:FMA_7592-MA_0001419 def: "The first seven ribs are connected behind with the vertebral column, and in front, through the intervention of the costal cartilages, with the sternum; they are called true ribs or vertebro-sternal ribs. False ribs are interconnected membranous structures that are connected with the sternum process. [WP,unvetted]." [Wikipedia:True_ribs] comment: This class was created automatically from a combination of ontologies synonym: "costa vera" EXACT [] synonym: "costae verae" RELATED PLURAL [Wikipedia:True_ribs] xref: FMA:7592 xref: MA:0001419 xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA xref: SCTID:368044009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png is_a: UBERON:0002228 ! rib [Term] id: UBERON:0002238 name: false rib namespace: uberon alt_id: UBERON:FMA_7594-MA_0001398 def: "The false ribs are the five sets of ribs below the top seven true ribs. Of these: the first three (eighth, ninth, and tenth rib) have their cartilages attached to the cartilage of the rib above (vertebro-chondral): the last two are free at their anterior extremities and are termed floating ribs or vertebral ribs. [WP,unvetted]." [Wikipedia:False_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "asternal ribs" RELATED [Wikipedia:False_ribs] synonym: "costa spuria" EXACT [] synonym: "costae spuriae" RELATED PLURAL [Wikipedia:False_ribs] xref: FMA:7594 xref: MA:0001398 xref: OpenCyc:Mx4rwLzzTZwpEbGdrcN5Y29ycA xref: SCTID:368045005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png is_a: UBERON:0002228 ! rib [Term] id: UBERON:0002239 name: floating rib namespace: uberon alt_id: UBERON:FMA_7595-MA_0001399 def: "Floating ribs are four atypical ribs (two lowermost pairs, XI-XII) in the human ribcage. They are called so because they are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs. Others have a third pair. Most, however, possess only two pairs. Their position can be permanently altered by a form of body modification called tightlacing, which uses a corset to compress and move the ribs. [WP,unvetted]." [Wikipedia:Floating_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "costa fluitante" EXACT [] xref: FMA:7595 xref: MA:0001399 xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA xref: SCTID:368046006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Skeleton_woman_back.png/200px-Skeleton_woman_back.png is_a: UBERON:0002238 ! false rib [Term] id: UBERON:0002240 name: spinal cord namespace: uberon alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075 def: "Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord] comment: TODO: add superclass to unify with VNC? subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "medulla spinalis" RELATED [BTO:0001279] synonym: "spinal cord structure" RELATED [ZFA:0000075] synonym: "spinal medulla" RELATED [BTO:0001279] xref: AAO:0010151 xref: BM:SpC xref: BTO:0001279 xref: EFO:0000110 xref: EHDAA2:0001891 xref: EHDAA:2863 xref: EMAPA:17577 xref: EMAPA:17700 xref: EV:0100316 xref: FMA:7647 xref: GAID:695 xref: MA:0000216 xref: MAT:0000183 xref: MESH:A.08.186.854 xref: MIAA:0000183 xref: NIF_GrossAnatomy:birnlex_1709 xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA xref: SCTID:180959008 xref: TAO:0000075 xref: VHOG:0000601 xref: XAO:0000020 xref: ZFA:0000075 xref: ncithesaurus:Spinal_Cord is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005174 ! back organ relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001137 ! back property_value: "spatially_disjoint_from" UBERON:0000955 [Term] id: UBERON:0002241 name: chondrocranium namespace: uberon alt_id: UBERON:FMA_76621-XAO_0003059-ZFA_0001424 def: "Anatomical cluster that is part of the cranium and composed entirely of either cartilage, cartilage replacement bones or a mixture of both[ZFA]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [ZFA:0001424, http://medical-dictionary.thefreedictionary.com/chondrocranium] comment: note the definition here specifically mentions cartilage or cartilage replacement bones. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes membrane bones subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "calvarium" RELATED [MA:0000317] synonym: "neurocranium" RELATED INCONSISTENT [MA:0000317] xref: AAO:0010169 xref: EHDAA2:0000243 xref: EMAPA:17681 xref: TAO:0001424 xref: VHOG:0000288 xref: ZFA:0001424 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002242 name: nucleus pulposus namespace: uberon alt_id: UBERON:FMA_76703-MA_0000112 def: "a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]." [Wikipedia:Nucleus_pulposus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus propulsus" RELATED [Wikipedia:Nucleus_pulposus] synonym: "pulpy nucleus" EXACT [] xref: BTO:0003626 xref: FMA:76703 xref: MA:0000112 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0002243 name: cutaneous vein namespace: uberon alt_id: UBERON:FMA_76720-MA_0002098 comment: This class was created automatically from a combination of ontologies xref: FMA:76720 xref: MA:0002098 xref: ncithesaurus:Cutaneous_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002244 name: premaxilla namespace: uberon alt_id: UBERON:FMA_76869-MA_0001493-ZFA_0000567 def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish[ZFA]. the embryonic bone that later fuses with the maxilla to form the incisive bone OR the embryonic structure that forms the anterior part of the maxillae.[TFD]." [Wikipedia:Premaxilla, ZFIN:curator, http://medical-dictionary.thefreedictionary.com/premaxilla] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "premaxillae" EXACT PLURAL [] xref: AAO:0000461 xref: EHDAA2:0001496 xref: EHDAA:6962 xref: EHDAA:8033 xref: EMAPA:17641 xref: EMAPA:17933 xref: EMAPA:19033 xref: FMA:76869 xref: MA:0001493 xref: TAO:0000567 xref: VHOG:0000426 xref: ZFA:0000567 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0008907 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermal bone relationship: part_of UBERON:0002397 ! maxilla relationship: part_of UBERON:0003113 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermatocranium [Term] id: UBERON:0002245 name: hemisphere of cerebellum namespace: uberon alt_id: UBERON:FMA_76925-MA_0000200 def: "A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]." [MP:0009959, Wikipedia:Cerebellar_hemisphere] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Hemisphere of cerebellum [H II - H X]" EXACT [] synonym: "cerebellar hemisphere" EXACT [] synonym: "cerebellum hemisphere" EXACT [] synonym: "hemispherium cerebelli [h ii - h x]" EXACT [FMA:76925, FMA:TA] xref: ABA:HEM xref: FMA:76925 xref: MA:0000200 xref: NIF_GrossAnatomy:birnlex_1575 xref: SCTID:362411002 xref: ncithesaurus:Hemisphere_of_the_Cerebellum is_a: UBERON:0002749 ! regional part of cerebellar cortex is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002246 name: dorsal thoracic nucleus namespace: uberon alt_id: UBERON:FMA_77023-MA_0001121 def: "." [Wikipedia:Clarke's_column] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Clarke's column" EXACT [] synonym: "Clarke's nucleus" EXACT [] synonym: "Stilling-Clarke's column" EXACT [] synonym: "Stilling-Clarke's nucleus" EXACT [] synonym: "nucleus thoracicus posterior" EXACT [FMA:77023, FMA:TA] synonym: "posterior thoracic nucleus" EXACT [] synonym: "spinal cord dorsal nucleus" EXACT [] xref: FMA:77023 xref: MA:0001121 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002247 name: uterine horn namespace: uberon alt_id: UBERON:FMA_77053-MA_0000393 def: "The uterine horns are the points where the uterus and the uterine tubes meet. It is one of the points of attachment for the round ligament of uterus (the other being the mons pubis). The uterine horns are far more prominent in other animals than they are in humans[WP,unvetted]." [Wikipedia:Uterine_horn] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004235 xref: EFO:0000975 xref: EMAPA:18985 xref: FMA:77053 xref: MA:0000393 xref: SCTID:245480007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Illu_female_pelvis.jpg/200px-Illu_female_pelvis.jpg is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002248 name: transverse pericardial sinus namespace: uberon alt_id: UBERON:FMA_77132-MA_0001880 def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. [WP,unvetted]." [Wikipedia:Transverse_pericardial_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Thiele's canal" EXACT [] synonym: "transverse sinus of pericardial cavity" EXACT [] xref: EHDAA2:0002077 xref: EHDAA:796 xref: EMAPA:16214 xref: FMA:77132 xref: MA:0001880 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0005601 ! dorsal mesocardium [Term] id: UBERON:0002249 name: median artery namespace: uberon alt_id: UBERON:FMA_77142-MA_0001999 comment: This class was created automatically from a combination of ontologies xref: FMA:77142 xref: MA:0001999 xref: ncithesaurus:Median_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002250 name: popliteal artery namespace: uberon alt_id: UBERON:FMA_77155-MA_0002021 def: "In human anatomy, the popliteal artery is defined as the extension of the 'superficial' femoral artery after passing through the adductor canal and adductor hiatus above the knee. The termination of the popliteal artery is its bifurcation into the anterior tibial artery and posterior tibial artery. The popliteal artery, through numerous smaller branches, supplies blood to the knee joint and muscles in the thigh and calf. It is accompanied, along its length, by the popliteal vein. [WP,unvetted]." [Wikipedia:Popliteal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:77155 xref: GAID:504 xref: MA:0002021 xref: MESH:A.07.231.114.681 xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA xref: SCTID:181350008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Popliteal_artery.png/200px-Popliteal_artery.png xref: ncithesaurus:Popliteal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002251 name: iliocostalis namespace: uberon alt_id: UBERON:FMA_77177-MA_0002319 def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:77177 xref: MA:0002319 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002252 name: splenius namespace: uberon alt_id: UBERON:FMA_77180-MA_0002382 def: "." [Wikipedia:Splenius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:77180 xref: MA:0002382 xref: ncithesaurus:Splenius is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002253 name: incisive bone namespace: uberon alt_id: UBERON:FMA_77231-MA_0001485 def: "The incisive bone is the portion of the maxilla adjacent to the incisors. It is a pair of small cranial bones at the very tip of the jaws of many animals, usually bearing teeth, but not always. They are connected to the maxilla and the nasals. The term premaxilla can also be used to refer to the incisive bone. [WP,unvetted]." [Wikipedia:Incisive_bone] comment: MA:0001485 was originally a distinct class 'incisive bone', now merged into MA:0001493 'premaxilla'. This is a general anatomical term in FMA. Here we treat it as an adult structure that develops from the embryonic premaxilla subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "premaxilla" RELATED [MA:0001493, Wikipedia:Incisive_bone] xref: FMA:77231 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! viscerocranium bone relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0002254 name: thyroglossal duct namespace: uberon alt_id: UBERON:FMA_77274-MA_0000130 def: "The thyroglossal duct is an embryological anatomical structure forming an open connection between the initial area of development of the thyroid gland and its final position. The thyroid gland starts developing in the oropharynx in the fetus and descends to its final position taking a path through the tongue, hyoid bone and neck muscles. The connection between its original position and its final position is the thyroglossal duct. This duct normally atrophies and closes off before birth but can remain open in some people. [WP,unvetted]." [Wikipedia:Thyroglossal_duct] comment: FMA treats this as vestigial subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ductus thyreoglossus" EXACT [Wikipedia:Thyroglossal_duct] xref: EMAPA:17070 xref: EMAPA:18833 xref: FMA:77274 xref: MA:0000130 xref: SCTID:308822005 xref: VHOG:0000746 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Illu08_thyroid.jpg/200px-Illu08_thyroid.jpg xref: ncithesaurus:Thyroglossal_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0002255 name: vomeronasal organ namespace: uberon alt_id: UBERON:FMA_77280-MA_0000289 def: "The vomeronasal organ (VNO), or Jacobson's organ, is an auxiliary olfactory sense organ that is found in many animals. It was discovered by Ludwig Jacobson in 1813. During embryological development, it forms from the nasal (olfactory) placode, at the anterior edge of the neural plate. It is a chemoreceptor organ which is completely separated from the nasal cavity the majority of the time, being enclosed in a separate bony or cartilaginous capsule which opens into the base of the nasal cavity. It is a tubular crescent shape and split into two pairs, separated by the nasal septum. It is the first processing stage of the accessory olfactory system, after which chemical stimuli go to the accessory olfactory bulb, then to targets in the amygdala and hypothalamus. The vomeronasal organ is mainly used to detect pheromones, chemical messengers that carry information between individuals of the same species, hence is sometimes referred to as the 'sixth sense. ' The VNO has two separate types of neuronal receptors, V1R and V2R, which are seven-transmembrane receptors that are coupled to G proteins. The receptors are distinct from each other and form the large family of receptors in the main olfactory system. Evidence shows that the VNO responds to nonvolatile cues which stimulate the receptor neurons. Information is then transferred to the accessory olfactory bulb as well as other centres of the brain such as the anterior part of the hypothalamus. Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans is widely controversial, though most studies agree the organ regresses during fetal development. [WP,unvetted]." [Wikipedia:Vomeronasal_organ] comment: Taxon notes: Generally formed only in tetrapods; lungfish have rudimentary VN organs; true VN organs are not normally found in recent fishes, birds, aquatic reptiles, aquatic mammals (Bertmar 1980). Humans: Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans was controversial, though most studies agree the organ regresses during fetal development. Many genes essential for VNO function in animals (such as TRPC2) are non-functional in humans (Liman ER. Use it or lose it: molecular evolution of sensory signaling in primates. Pflugers Arch. 2006;453(2):125-31.) subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Jacobson's organ" EXACT [] synonym: "organ of Jacobsen" RELATED [] synonym: "organum vomeronasale" EXACT [BTO:0002608] xref: AAO:0000997 xref: BTO:0002608 xref: EFO:0001934 xref: EHDAA2:0002211 xref: EHDAA:7865 xref: EMAPA:17612 xref: FMA:77280 xref: GAID:354 xref: MA:0000289 xref: MESH:A.04.531.591.940 xref: SCTID:361346007 xref: VHOG:0000665 xref: XAO:0000272 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray51.png/200px-Gray51.png is_a: UBERON:0000020 ! sense organ is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0009954 ! vomeronasal system [Term] id: UBERON:0002256 name: dorsal horn of spinal cord namespace: uberon alt_id: UBERON:FMA_77405-MA_0001119 def: "the pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]." [GO:0021516, MP:0006282, Wikipedia:Posterior_horn_of_spinal_cord] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cornu dorsale" EXACT [ZFA:0000649] synonym: "dorsal gray column of spinal cord" EXACT [FMA:256530] synonym: "dorsal gray horn" EXACT [NIF_GrossAnatomy:birnlex_2667] synonym: "dorsal gray matter of spinal cord" EXACT [FMA:256530] synonym: "dorsal grey column of spinal cord" EXACT [] synonym: "dorsal horn" EXACT [ZFA:0000649] synonym: "dorsal horn spinal cord" EXACT [ZFA:0000649] synonym: "dorsal region of mature spinal cord" EXACT [] synonym: "dorsal region of spinal cord" EXACT [] synonym: "dorsal spinal cord" EXACT [] synonym: "posterior gray column of spinal cord" EXACT [FMA:256530] synonym: "posterior gray horn of spinal cord" EXACT [FMA:256530] synonym: "posterior grey column of spinal cord" EXACT [] synonym: "posterior horn of spinal cord" EXACT [Wikipedia:Posterior_horn_of_spinal_cord] synonym: "spinal cord dorsal horn" EXACT [] synonym: "spinal cord posterior horn" EXACT [NIF_GrossAnatomy:birnlex_2667] xref: BM:SpC-DH xref: EMAPA:17773 xref: FMA:256530 xref: MA:0001119 xref: NIF_GrossAnatomy:birnlex_2667 xref: SCTID:180961004 xref: VHOG:0001287 xref: ZFA:0000649 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png xref: ncithesaurus:Dorsal_Horn_of_the_Spinal_Cord is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0002257 name: ventral horn of spinal cord namespace: uberon alt_id: UBERON:FMA_77431-MA_0001134 def: "the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior gray column of spinal cord" EXACT [FMA:256541] synonym: "anterior gray horn of spinal cord" EXACT [FMA:256541] synonym: "anterior grey column of spinal cord" EXACT [] synonym: "anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668] synonym: "spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668] synonym: "spinal cord ventral horn" EXACT [] synonym: "ventral gray column of spinal cord" EXACT [FMA:256541] synonym: "ventral gray matter of spinal cord" EXACT [FMA:256541] synonym: "ventral grey column of spinal cord" EXACT [] synonym: "ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668] synonym: "ventral horn spinal cord" EXACT [ZFA:0000702] synonym: "ventral region of spinal cord" EXACT [] synonym: "ventral spinal cord" EXACT [] xref: EMAPA:18575 xref: FMA:256541 xref: MA:0001134 xref: NIF_GrossAnatomy:birnlex_2668 xref: SCTID:279443000 xref: VHOG:0001288 xref: ZFA:0000702 xref: ncithesaurus:Ventral_Horn_of_the_Spinal_Cord is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0002258 name: dorsal funiculus namespace: uberon alt_id: UBERON:FMA_77461-ZFA_0000501 def: "The portion of the medulla spinalis which lies between the posterolateral sulcus and the posterior median sulcus is named the posterior funiculus. This area includes the dorsal columns (also called the posterior columns) which contains the fasciculus gracilis and, higher in the body, the fasciculus cuneatus, which are separated by a partition of glial cells. Histologically, these two fasciculi are on other sides of the dorsal intermediate sulcus. [WP,unvetted]." [Wikipedia:Dorsal_funiculus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal funiculus of spinal cord" EXACT [] synonym: "dorsal white column of spinal cord" EXACT [FMA:77461] synonym: "funiculus dorsalis" EXACT [ZFA:0000501] synonym: "funiculus posterior medullae spinalis" EXACT [FMA:77461, FMA:TA] synonym: "posterior funiculus" EXACT [] synonym: "posterior funiculus of spinal cord" EXACT [] synonym: "posterior white column of spinal cord" EXACT [FMA:77461] xref: FMA:77461 xref: SCTID:362432005 xref: TAO:0000501 xref: ZFA:0000501 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png is_a: UBERON:0006127 ! funiculus of spinal cord [Term] id: UBERON:0002259 name: corpora quadrigemina namespace: uberon alt_id: UBERON:FMA_77488-MA_0002567 def: "In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculibtwo inferior, two superiorblocated on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina] comment: editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "colliculi" EXACT [MP:0000899] synonym: "corpora quadrigemina" EXACT [] xref: BTO:0001710 xref: EV:0100244 xref: FMA:242157 xref: GAID:574 xref: MA:0002567 xref: MESH:A.08.186.211.132.659.237 xref: SCTID:361579006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png xref: ncithesaurus:Corpora_Quadrigemina is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0002260 name: ventral root of spinal cord namespace: uberon alt_id: UBERON:FMA_77516-ZFA_0000705 def: "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve." [Wikipedia:Anterior_root_of_spinal_nerve] comment: FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior nerve root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve] synonym: "anterior root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve] synonym: "ventral root" BROAD [NIF_GrossAnatomy:nlx_anat_20090209] xref: FMA:5979 xref: FMA:77516 xref: NIF_GrossAnatomy:nlx_anat_20090209 xref: TAO:0000705 xref: ZFA:0000705 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: ncithesaurus:Ventral_Nerve_Root is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0002261 name: dorsal root of spinal cord namespace: uberon alt_id: UBERON:FMA_77517-ZFA_0000652 def: "In anatomy and neurology, the dorsal root (or posterior root) is the afferent sensory root of a spinal nerve. At the distal end of the dorsal root is the dorsal root ganglion, which contains the neuron cell bodies of the nerve fibres conveyed by the root. If the dorsal root of a spinal nerve were severed it would lead to numbness in certain areas of the body. The lateral division of the dorsal root contains lightly myelinated and unmyelinated axons of small diameter. These transmit pain and temperature sensation from the body. These fibers cross through the anterior white commissure to form the Anterior lateral system in the lateral funiculus. The medial division of the dorsal root contains myelinated axons of larger diameter. These transmit information of discriminative touch, pressure, vibration, and conscious proprioception originating from spinal levels C2 through S5. These fibers are pushed in towards the posterior medial sulcus to form the fasciculus gracilis and the fasciculus cuneatus. [WP,unvetted]." [Wikipedia:Posterior_root_of_spinal_nerve] comment: FMA xref is 'general anatomical term'. We xref both to ensure equivalence. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal root" EXACT [ZFA:0000652] synonym: "dorsal root of spinal nerve" EXACT [FMA:5980] synonym: "dorsal spinal nerve root" EXACT [FMA:5980] synonym: "posterior root of spinal nerve" EXACT [Wikipedia:Posterior_root_of_spinal_nerve] synonym: "radix dorsalis" EXACT [ZFA:0000652] synonym: "radix posterior (nervus spinalis)" EXACT [FMA:5980] synonym: "radix sensoria (nervus spinalis)" EXACT [FMA:5980] synonym: "sensory root of spinal nerve" EXACT [FMA:5980] xref: BTO:0000360 xref: FMA:5980 xref: NIF_GrossAnatomy:nlx_anat_20090208 xref: SCTID:362436008 xref: TAO:0000652 xref: ZFA:0000652 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: ncithesaurus:Dorsal_Root_of_the_Spinal_Nerve is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0002262 name: celiac ganglion namespace: uberon alt_id: UBERON:FMA_77570-MA_0001158 def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]." [Wikipedia:Celiac_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "coeliac ganglion" RELATED [] xref: EHDAA2:0000266 xref: EHDAA:8946 xref: EMAPA:19321 xref: FMA:77570 xref: MA:0001158 xref: SCTID:362492008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray848.png/200px-Gray848.png xref: ncithesaurus:Coeliac_Ganglion is_a: UBERON:0003964 ! prevertebral ganglion [Term] id: UBERON:0002263 name: lentiform nucleus namespace: uberon alt_id: UBERON:FMA_77615-MA_0000896 def: "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]. The part of the corpus striatum somewhat resembling a biconvex lens, divided into an external, larger, lateral part (putamen) and an internal, smaller, lighter colored medial part (globus pallidus), which is in turn subdivided into a smaller, medial, and a larger, lateral part by the medial medullary lamina[BTO]." [BTO:0002250, Wikipedia:Lentiform_nucleus] comment: TODO - add parts subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lenticular nucleus" RELATED [BTO:0002250] synonym: "nucleus lenticularis" EXACT [BTO:0002250] synonym: "nucleus lentiformis" EXACT [BTO:0002250] xref: BTO:0002250 xref: EMAPA:18208 xref: EV:0100186 xref: FMA:77615 xref: MA:0000896 xref: OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA xref: SCTID:279319002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray741.png/200px-Gray741.png xref: ncithesaurus:Lenticular_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000369 ! corpus striatum relationship: part_of UBERON:0005403 ! ventral striatum [Term] id: UBERON:0002264 name: olfactory bulb namespace: uberon alt_id: UBERON:FMA_77624-MA_0000194-MIAA_0000116-ZFA_0000402 def: "A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]. Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract. In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb[WP]." [Wikipedia:Olfactory_bulb] comment: Note that in uberon 'main olfactory bulb' is a separate class, but some ontologies may treat this as partially synonymous. Development notes: the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bulbus olfactorius" EXACT [Wikipedia:Olfactory_bulb] synonym: "olfactory lobe" RELATED [ZFA:0000402] xref: AAO:0010165 xref: ABA:OLF xref: BM:Tel-OB xref: BTO:0000961 xref: EHDAA2:0001294 xref: EV:0100173 xref: FMA:77624 xref: GAID:633 xref: MA:0000194 xref: MESH:A.08.186.211.577.699.573 xref: NIF_GrossAnatomy:birnlex_1137 xref: SCTID:279394006 xref: TAO:0000402 xref: VHOG:0000033 xref: XAO:0004180 xref: ZFA:0000402 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg/200px-1543%2CVesalius%27OlfactoryBulbs.jpg xref: ncithesaurus:Olfactory_Bulb is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0005366 ! olfactory lobe relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory system relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! olfactory system disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon property_value: "spatially_disjoint_from" UBERON:0001950 property_value: "spatially_disjoint_from" UBERON:0002421 [Term] id: UBERON:0002265 name: olfactory tract namespace: uberon alt_id: UBERON:FMA_77626-MA_0000975 def: "Tract of brain which is continuous with olfactory bulb and the cerebral cortex.[FMA]" [FMA:FMA, Wikipedia:Olfactory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "olfactory peduncle" RELATED [BTO:0003647] synonym: "tractus olfactorius" RELATED [BTO:0003647] xref: BTO:0003647 xref: FMA:77626 xref: MA:0000975 xref: NIF_GrossAnatomy:birnlex_1663 xref: SCTID:362356008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: ncithesaurus:Olfactory_Tract is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0002894 ! olfactory cortex [Term] id: UBERON:0002266 name: anterior olfactory nucleus namespace: uberon alt_id: UBERON:FMA_77628-MA_0000968 def: "The anterior olfactory nucleus (AON; also called the anterior olfactory cortex) is a portion of the forebrain of vertebrates. [WP,unvetted]." [Wikipedia:Anterior_olfactory_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "AON" RELATED [BTO:0003649] synonym: "anterior olfactory cortex" RELATED [BTO:0003649] synonym: "nucleus retrobulbaris [a8]" EXACT [FMA:77628, FMA:TA] synonym: "retrobulbar nucleus [a8]" EXACT [] xref: ABA:AON xref: BM:Tel-OAN xref: BTO:0003649 xref: EV:0100174 xref: FMA:77628 xref: MA:0000968 xref: NIF_GrossAnatomy:birnlex_1085 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG xref: ncithesaurus:Anterior_Olfactory_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002894 ! olfactory cortex disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon property_value: "spatially_disjoint_from" UBERON:0002590 property_value: "spatially_disjoint_from" UBERON:0002893 property_value: "spatially_disjoint_from" UBERON:0004069 [Term] id: UBERON:0002267 name: laterodorsal tegmental nucleus namespace: uberon alt_id: UBERON:FMA_77654-MA_0001016 def: "The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]." [Wikipedia:Laterodorsal_tegmental_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateroposterior tegmental nucleus" EXACT [] synonym: "nucleus tegmentalis posterolateralis" EXACT [FMA:77654, FMA:TA] xref: ABA:LDT xref: BTO:0004016 xref: FMA:77654 xref: MA:0001016 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons property_value: "spatially_disjoint_from" UBERON:0002047 property_value: "spatially_disjoint_from" UBERON:0002148 property_value: "spatially_disjoint_from" UBERON:0002587 property_value: "spatially_disjoint_from" UBERON:0003004 [Term] id: UBERON:0002268 name: olfactory organ namespace: uberon alt_id: UBERON:FMA_77659-XAO_0000273 comment: note - fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint subset: functional_classification ! functional_classification synonym: "olfactory neuroepithelium" RELATED [BTO:0001772] synonym: "organ olfactus" RELATED [BTO:0001772] synonym: "organum olfactorium" RELATED [BTO:0001772] xref: AAO:0010180 xref: BTO:0001772 xref: FMA:77659 xref: VHOG:0000287 xref: XAO:0000273 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! olfactory system [Term] id: UBERON:0002269 name: pupillary membrane namespace: uberon alt_id: UBERON:FMA_77663-MA_0001293 def: "The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks." [Wikipedia:Persistent_pupillary_membrane] comment: This class was created automatically from a combination of ontologies xref: FMA:77663 xref: MA:0001293 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001771 ! pupil [Term] id: UBERON:0002270 name: hyaloid artery namespace: uberon alt_id: UBERON:FMA_77670-ZFA_0005045 def: "The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Cloquet's canal is named after the man who first described it, French physician Jules Germain Cloquet (1790b1883). Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as \"floaters\". An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla." [Wikipedia:Hyaloid_artery] comment: ZFA def is: Artery that is internal to the eye; this is more general than the human-centric definition here.. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] xref: EHDAA2:0004072 xref: EMAPA:19242 xref: FMA:77670 xref: SCTID:308790003 xref: TAO:0005045 xref: VHOG:0001478 xref: XAO:0004155 xref: ZFA:0005045 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png is_a: UBERON:0001637 ! artery is_a: UBERON:0002784 ! regional part of diencephalon is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0003098 ! optic stalk relationship: part_of UBERON:0005492 ! hyaloid vessel relationship: part_of UBERON:0006010 ! hyaloid canal [Term] id: UBERON:0002271 name: periventricular zone of hypothalamus namespace: uberon alt_id: UBERON:FMA_77682-MA_0000846 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus periventricular zone" EXACT [] xref: ABA:PVZ xref: FMA:77682 xref: MA:0000846 xref: VHOG:0000623 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002272 name: medial zone of hypothalamus namespace: uberon alt_id: UBERON:FMA_77683-MA_0000837 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus medial zone" EXACT [] xref: ABA:MEZ xref: FMA:77683 xref: MA:0000837 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002273 name: lateral zone of hypothalamus namespace: uberon alt_id: UBERON:FMA_77684-MA_0000833 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus lateral zone" EXACT [] xref: ABA:LZ xref: FMA:77684 xref: MA:0000833 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002274 name: perifornical nucleus namespace: uberon alt_id: UBERON:FMA_77688-MA_0000836 comment: This class was created automatically from a combination of ontologies xref: FMA:77688 xref: MA:0000836 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus [Term] id: UBERON:0002275 name: reticular formation namespace: uberon alt_id: UBERON:FMA_77719-ZFA_0000421 comment: note that this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:77719 xref: MESH:A.08.186.211.132.772 xref: SCTID:361552007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0002276 name: lamina of spiral limbus namespace: uberon alt_id: UBERON:FMA_77721-MA_0001191 def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminC& spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [Wikipedia:Limbus_laminae_spiralis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "limbus lamina spiralis" EXACT [] synonym: "limbus laminae spiralis" EXACT [] synonym: "spiral limbus lamina" EXACT [] xref: FMA:77721 xref: MA:0001191 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray930.png/200px-Gray930.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002277 name: spiral sulcus namespace: uberon alt_id: UBERON:FMA_77744-MA_0001195 comment: This class was created automatically from a combination of ontologies synonym: "sulcus spiralis" EXACT [] xref: FMA:77744 xref: MA:0001195 is_a: UBERON:0000093 ! sulcus relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002278 name: perilymphatic space namespace: uberon alt_id: UBERON:FMA_77745-MA_0000248 def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Retzius space" RELATED [] synonym: "perilymphatic channel" EXACT [] synonym: "spatium perilymphaticum" RELATED [] xref: BTO:0002083 xref: FMA:77745 xref: MA:0000248 xref: SCTID:362576001 xref: ZFA:0005459 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0002279 name: vestibular aqueduct namespace: uberon alt_id: UBERON:FMA_77821-MA_0001186 def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [Wikipedia:Vestibular_aqueduct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:77821 xref: GAID:885 xref: MA:0001186 xref: MESH:A.09.246.631.909.957 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule [Term] id: UBERON:0002280 name: otolith namespace: uberon alt_id: UBERON:FMA_77826-ZFA_0001617 def: "Acellular structure composed of calcium carbonate located in the otolith organ." [Wikipedia:Otolith, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "immature otolith" RELATED [] synonym: "immature otoliths" RELATED [] synonym: "otoconium" EXACT [] synonym: "otoliths" EXACT PLURAL [] synonym: "statoconium" EXACT [] synonym: "statolith" RELATED [] xref: ANISEED:777311 xref: ANISEED:874485 xref: FMA:77826 xref: TAO:0001621 xref: ZFA:0001617 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg xref: ncithesaurus:Otolith is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002518 ! otolith organ [Term] id: UBERON:0002281 name: vestibular membrane of cochlear duct namespace: uberon alt_id: UBERON:FMA_77829-MA_0001200 def: "a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Reissner's membrane" EXACT [] synonym: "superior wall of cochlear duct" EXACT [] synonym: "vestibular membrane" EXACT [] synonym: "vestibular membrane of reissner" EXACT [] xref: FMA:77829 xref: MA:0001200 xref: SCTID:362575002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002282 name: stria vascularis of cochlear duct namespace: uberon alt_id: UBERON:FMA_77832-MA_0001198 def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [Wikipedia:Stria_vascularis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "stria vascularis" EXACT [] synonym: "stria vascularis ductus cochlearis" RELATED [BTO:0001819] synonym: "stria vascularis of cochlea" EXACT [] synonym: "vascular stria of cochlear duct" RELATED [BTO:0001819] xref: BTO:0001819 xref: EFO:0001644 xref: FMA:77832 xref: GAID:875 xref: MA:0001198 xref: MESH:A.09.246.631.246.292.876 xref: NIF_GrossAnatomy:birnlex_2525 xref: SCTID:279842002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002283 name: nail matrix namespace: uberon alt_id: UBERON:FMA_77856-MA_0002707 def: "Portion of tissue (or germinal matrix) upon which the nail rests, the part of the nail bed that extends beneath the nail root and contains nerves, lymph and blood vessels. The matrix is responsible for the production of the cells that become the nail plate. The width and thickness of the nail plate is determined by the size, length, and thickness of the matrix, while the shape of the fingertip itself determines if the nail plate is flat, arched, or hooked. The matrix will continue to grow as long as it receives nutrition and remains in a healthy condition. As new nail plate cells are incubated, they emerge from the matrix round and white to push older nail plate cells forward; and in this way yet older cells become compressed, flat, and translucent, making the pink colour of the capillaries in the nail bed below visible[WP]." [UBERON:cjm] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "keratogenous membrane" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] synonym: "matrix unguis" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] synonym: "onychostroma" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] xref: FMA:77856 xref: MA:0002707 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001705 ! nail [Term] id: UBERON:0002284 name: hyponychium namespace: uberon alt_id: UBERON:FMA_77860-MA_0002705 def: "Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed." [Wikipedia:Hyponychium] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:77860 xref: MA:0002705 xref: SCTID:300918002 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0002097 ! skin of body relationship: part_of UBERON:0001705 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! nail [Term] id: UBERON:0002285 name: lateral ventricle namespace: uberon alt_id: UBERON:FMA_78448-MA_0000192 def: "The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]. The lateral ventricles are part of the ventricular system of the brain. Classified as part of the telencephalon, they are the largest of the ventricles. The lateral ventricles connect to the central third ventricle through the interventricular foramina of Monro[WP]." [GO:0021670, Wikipedia:Lateral_ventricle] comment: Paired structure subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral ventricle of brain" RELATED [BTO:0000879] synonym: "telencephalic ventricle" EXACT [VHOG:0000643, ZFA:0000696] synonym: "telencephalon lateral ventricle" EXACT [EHDAA2:0001984] xref: BM:Tel-LV xref: BTO:0000879 xref: EFO:0001961 xref: EHDAA2:0001984 xref: EHDAA:3502 xref: EHDAA:6576 xref: EV:0100307 xref: FMA:78448 xref: GAID:611 xref: MA:0000192 xref: MESH:A.08.186.211.276.650 xref: NIF_GrossAnatomy:birnlex_1263 xref: OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA xref: SCTID:180930008 xref: VHOG:0000643 xref: ZFA:0000696 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png xref: ncithesaurus:Lateral_Ventricle is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002286 name: third ventricle namespace: uberon alt_id: UBERON:FMA_78454-MA_0000182-ZFA_0000161 def: "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct (Maryann Martone). A narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami. Its floor is formed by the HYPOTHALAMUS, its anterior wall by the lamina terminalis, and its roof by EPENDYMA. It communicates with the FOURTH VENTRICLE by the CEREBRAL AQUEDUCT, and with the LATERAL VENTRICLES by the interventricular foramina[GAID]." [GAID:614, NIF_GrossAnatomy:birnlex_714, Wikipedia:Third_ventricle] comment: Singular structure subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "3rd ventricle" EXACT [] synonym: "diencephalic ventricle" RELATED [] synonym: "diencephalic vesicle" RELATED [] synonym: "ventriculus diencephali" EXACT [ZFA:0000161] xref: BM:Die-3V xref: EHDAA2:0000084 xref: EMAPA:16515 xref: EMAPA:16642 xref: EMAPA:16900 xref: EV:0100308 xref: FMA:78454 xref: GAID:614 xref: MA:0000182 xref: MESH:A.08.186.211.276.840 xref: NIF_GrossAnatomy:birnlex_714 xref: OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA xref: SCTID:180931007 xref: TAO:0000161 xref: VHOG:0000007 xref: ZFA:0000161 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png xref: ncithesaurus:Third_Ventricle_of_Brain is_a: UBERON:0002784 ! regional part of diencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002287 name: optic recess of third ventricle namespace: uberon alt_id: UBERON:FMA_78455-ZFA_0000049 def: "At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted]." [Wikipedia:Optic_recess] comment: TODO - check taxonomic grouping subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "optic recess" EXACT [] synonym: "preoptic recess" EXACT [] synonym: "recessus supraopticus" EXACT [FMA:78455, FMA:TA] synonym: "supraoptic recess" EXACT [] xref: EHDAA2:0001317 xref: EHDAA:1343 xref: EHDAA:1973 xref: EHDAA:2649 xref: EHDAA:3478 xref: EMAPA:16644 xref: EMAPA:16902 xref: FMA:78455 xref: SCTID:369279008 xref: TAO:0000049 xref: VHOG:0000595 xref: ZFA:0000049 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray721.png/200px-Gray721.png is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0002288 name: choroid plexus of third ventricle namespace: uberon alt_id: UBERON:FMA_78462-MA_0000879 def: "A choroid plexus that is part of a third ventricle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "3rd ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of third ventricle" EXACT [] synonym: "choroid plexus third ventricle" EXACT [ZFA:0001444] synonym: "diencephalic choroid plexus " EXACT [ZFA:0001444] synonym: "third ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle choroid plexus" EXACT [] xref: FMA:78462 xref: MA:0000879 xref: SCTID:61576002 xref: VHOG:0001374 xref: ZFA:0001444 xref: ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0002289 name: cerebral aqueduct namespace: uberon alt_id: UBERON:0005684 alt_id: UBERON:FMA_78467-MA_0000208 def: "The mesencephalic duct, also known as the aqueductus mesencephali, aqueduct of Sylvius or the cerebral aqueduct, contains cerebrospinal fluid (CSF), is within the mesencephalon (or midbrain) and connects the third ventricle in the diencephalon to the fourth ventricle, which is between the pons and cerebellum. [WP,unvetted]." [Wikipedia:Cerebral_aqueduct] comment: AO notes: Two distinct classes in ncit subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "aqueduct (sylvius)" EXACT [] synonym: "aqueduct of midbrain" EXACT [] synonym: "aqueduct of sylvius" EXACT [] synonym: "aqueductus mesencephali" EXACT [FMA:78467, FMA:TA] synonym: "cerebral aquaduct" EXACT [ZFA:0000159] synonym: "cerebral aqueduct of sylvius" EXACT [] synonym: "medial tectal ventricle" EXACT [ZFA:0000159] synonym: "mesencephalic ventricle" EXACT [ZFA:0000159] synonym: "mesencephalic vesicle" EXACT [ZFA:0000159] synonym: "midbrain cerebral aqueduct" EXACT [EHDAA2:0001163] synonym: "midbrain ventricle" EXACT [ZFA:0000159] synonym: "tectal ventricle" EXACT [ZFA:0000159] xref: BM:MB-AQ xref: EFO:0003501 xref: EHDAA2:0001163 xref: EHDAA:3696 xref: EMAPA:17795 xref: EV:0100309 xref: FMA:78467 xref: GAID:583 xref: MA:0000208 xref: MESH:A.08.186.211.132.659.822.187 xref: NIF_GrossAnatomy:birnlex_1261 xref: SCTID:279249003 xref: VHOG:0000832 xref: ZFA:0000159 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: ncithesaurus:Aqueduct_of_Sylvius xref: ncithesaurus:Cerebral_Aqueduct is_a: UBERON:0002950 ! regional part of midbrain is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002290 name: choroid plexus of fourth ventricle namespace: uberon alt_id: UBERON:FMA_78492-MA_0000983 def: "A choroid plexus that is part of a fourth ventricle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "4th ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of fourth ventricle" EXACT [] synonym: "choroid plexus fourth ventricle" EXACT [ZFA:0001446] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle choroid plexus" EXACT [] xref: FMA:78492 xref: MA:0000983 xref: SCTID:42214001 xref: VHOG:0001375 xref: ZFA:0001446 xref: ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002291 name: central canal namespace: uberon alt_id: UBERON:0002220 alt_id: UBERON:FMA_75364-MA_0001117 alt_id: UBERON:FMA_78497-ZFA_0000938 def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [ZFIN:curator] comment: previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "canalis centralis" EXACT [ZFA:0000938] synonym: "central canal of spinal cord" EXACT [] synonym: "neural lumen" RELATED [] synonym: "spinal cord central canal" EXACT [] synonym: "ventricle of spinal cord" EXACT [FMA:78497] xref: EHDAA2:0004361 xref: FMA:78497 xref: MA:0001117 xref: NIF_GrossAnatomy:birnlex_1409 xref: SCTID:279447004 xref: TAO:0000938 xref: ZFA:0000938 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png xref: ncithesaurus:Central_Canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: UBERON:0002292 name: joint of head of rib namespace: uberon alt_id: UBERON:FMA_7951-MA_0001510 def: "The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]." [Wikipedia:Costovertebral_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "costal head joint" EXACT [] synonym: "costocorporeal joint" EXACT [] synonym: "costovertebral joint" EXACT [] synonym: "head of rib joint" EXACT [OBOL:automatic] synonym: "joint of costal head" EXACT [] synonym: "joint of rib head" EXACT [OBOL:automatic] synonym: "rib head joint" EXACT [OBOL:automatic] xref: EMAPA:19020 xref: EMAPA:19208 xref: FMA:7951 xref: MA:0001510 xref: SCTID:263315000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray312.png/200px-Gray312.png xref: ncithesaurus:Costovertebral_Joint is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0002293 name: costochondral joint namespace: uberon alt_id: UBERON:FMA_7956-MA_0001509 def: "." [Wikipedia:Costochondral_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "articulatio costochondralis" EXACT [] synonym: "chondrocostal synchondrosis" EXACT [] synonym: "costochondral junction" EXACT [] synonym: "costochondral synchondrosis" EXACT [] xref: FMA:7956 xref: MA:0001509 xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA xref: SCTID:282413008 xref: ncithesaurus:Costochondral_Joint is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002215 ! synchondrosis [Term] id: UBERON:0002294 name: biliary system namespace: uberon alt_id: UBERON:FMA_79646-MA_0001273 def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "biliary apparatus" EXACT [] xref: FMA:79646 xref: SCTID:361354009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002295 name: scala media namespace: uberon alt_id: UBERON:FMA_79789-MA_0002458 def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [WP,unvetted]." [Wikipedia:Scala_media] comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cochlear duct" RELATED [] xref: EHDAA2:0000262 xref: FMA:79789 xref: MA:0002458 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0002278 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! perilymphatic space relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0002296 name: dorsal mesentery namespace: uberon alt_id: UBERON:FMA_79795-ZFA_0005130 def: "The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]." [Wikipedia:Dorsal_mesentery, Wikipedia:Mesentery#Development, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal mesogastrium" RELATED [Wikipedia:Dorsal_mesentery] xref: EHDAA2:0004560 xref: EHDAA:3019 xref: EHDAA:3033 xref: EHDAA:3921 xref: EHDAA:3934 xref: EHDAA:3957 xref: EHDAA:3971 xref: FMA:79795 xref: SCTID:308823000 xref: TAO:0005130 xref: ZFA:0005130 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray985.png/200px-Gray985.png is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007826 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! peritoneal mesentery relationship: part_of UBERON:0009664 ! gut mesentery [Term] id: UBERON:0002297 name: cerumen namespace: uberon alt_id: UBERON:FMA_79869-MA_0002506 def: "." [Wikipedia:Cerumen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ear wax" EXACT [] xref: ENVO:02000028 xref: FMA:79869 xref: GAID:1158 xref: MA:0002506 xref: MESH:A.12.200.147 xref: ncithesaurus:Cerumen is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0002298 name: brainstem namespace: uberon alt_id: UBERON:FMA_79876-MA_0000169 def: "The brainstem (or brain stem) is the lower part of the brain, adjoining and structurally continuous with the spinal cord. The brain stem provides the main motor and sensory innervation to the face and neck via the cranial nerves. Though small, this is an extremely important part of the brain as the nerve connections of the motor and sensory systems from the main part of the brain to the rest of the body pass through the brain stem. This includes the corticospinal tract (motor), the posterior column-medial lemniscus pathway (fine touch, vibration sensation and proprioception) and the spinothalamic tract (pain, temperature, itch and crude touch). The brain stem also plays an important role in the regulation of cardiac and respiratory function. It also regulates the central nervous system, and is pivotal in maintaining consciousness and regulating the sleep cycle. Some taxonomies describe the brain stem as the medulla oblongata (myelencephalon) and pons (part of metencephalon), whereas others include the midbrain (mesencephalon). [WP,unvetted]." [Wikipedia:Brainstem] comment: ZFA includes the tegmentum, MA the whole midbrain. Both include medulla oblongata. Here we make an overlaps link between midbrain and brainstem. Note that ABA states that cerebellum and brainstem are spatially disjoint. We do NOT include this axiom here, as it leads to multiple inconsistencies. This needs addressed in more detail. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "brain stem" EXACT [ABA:BS] synonym: "truncus encephalicus" RELATED [BTO:0000146] xref: ABA:BS xref: BTO:0000146 xref: EFO:0001962 xref: EV:0100241 xref: FMA:79876 xref: MA:0000169 xref: MESH:A.08.186.211.132 xref: NIF_GrossAnatomy:birnlex_1565 xref: SCTID:180925009 xref: VHOG:0001457 xref: ZFA:0001707 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png xref: ncithesaurus:Brain_Stem is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain property_value: "spatially_disjoint_from" UBERON:0002037 [Term] id: UBERON:0002299 name: alveolus of lung namespace: uberon alt_id: UBERON:FMA_82493-MA_0000420 def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "alveoli" RELATED PLURAL [BTO:0000060] synonym: "alveolus" BROAD [] synonym: "alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus] synonym: "lung alveolus" EXACT [] synonym: "pulmonary alveolus" EXACT [FMA:7318] xref: BTO:0000060 xref: EFO:0001985 xref: EMAPA:19182 xref: EMAPA:19184 xref: EMAPA:19186 xref: EMAPA:19188 xref: EMAPA:19190 xref: EV:0100043 xref: FMA:7318 xref: GAID:349 xref: MA:0000420 xref: MESH:A.04.411.715 xref: SCTID:361364000 xref: VHOG:0001445 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003215 ! alveolus relationship: part_of UBERON:0002169 ! alveolar sac relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0002300 name: ventricle namespace: uberon alt_id: UBERON:FMA_82553-MA_0000818 def: "A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain." [Wikipedia:Ventricle] is_obsolete: true xref: FMA:82553 [Term] id: UBERON:0002301 name: layer of neocortex namespace: uberon alt_id: UBERON:FMA_83138-MA_0000186 comment: This class was created automatically from a combination of ontologies synonym: "cerebral cortex layer" RELATED [MA:0000186] synonym: "cortical layer" EXACT [] synonym: "neocortex layer" EXACT [] xref: ABA:CTX1-6b xref: FMA:83138 xref: MA:0000186 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002302 name: myocardium of atrium namespace: uberon alt_id: UBERON:FMA_83509-MA_0000081-ZFA_0001374 def: "A myocardium that is part of a cardiac atrium [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Cardiac atria cardiac muscle" EXACT [OBOL:automatic] synonym: "Cardiac atria heart muscle" EXACT [OBOL:automatic] synonym: "Cardiac atria heart myocardium" EXACT [OBOL:automatic] synonym: "Cardiac atria muscle of heart" EXACT [OBOL:automatic] synonym: "Cardiac atria myocardium" EXACT [OBOL:automatic] synonym: "atrial myocardium" EXACT [] synonym: "atrium myocardium" EXACT [] synonym: "atrium of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "atrium of heart heart muscle" EXACT [OBOL:automatic] synonym: "atrium of heart heart myocardium" EXACT [OBOL:automatic] synonym: "atrium of heart muscle of heart" EXACT [OBOL:automatic] synonym: "atrium of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac atrium heart muscle" EXACT [OBOL:automatic] synonym: "cardiac atrium heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac atrium muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac atrium myocardium" EXACT [OBOL:automatic] synonym: "cardiac muscle of Cardiac atria" EXACT [OBOL:automatic] synonym: "cardiac muscle of atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart atrium" EXACT [OBOL:automatic] synonym: "heart atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "heart atrium heart muscle" EXACT [OBOL:automatic] synonym: "heart atrium heart myocardium" EXACT [OBOL:automatic] synonym: "heart atrium muscle of heart" EXACT [OBOL:automatic] synonym: "heart atrium myocardium" EXACT [OBOL:automatic] synonym: "heart muscle of Cardiac atria" EXACT [OBOL:automatic] synonym: "heart muscle of atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle of cardiac atrium" EXACT [OBOL:automatic] synonym: "heart muscle of heart atrium" EXACT [OBOL:automatic] synonym: "heart myocardium of Cardiac atria" EXACT [OBOL:automatic] synonym: "heart myocardium of atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium of cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium of heart atrium" EXACT [OBOL:automatic] synonym: "muscle of heart of Cardiac atria" EXACT [OBOL:automatic] synonym: "muscle of heart of atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart of cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle of heart of heart atrium" EXACT [OBOL:automatic] synonym: "myocardium of Cardiac atria" EXACT [OBOL:automatic] synonym: "myocardium of atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium of cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium of heart atrium" EXACT [OBOL:automatic] xref: EFO:0003087 xref: FMA:83509 xref: MA:0000081 xref: SCTID:191910002 xref: TAO:0001374 xref: VHOG:0000602 xref: ZFA:0001374 is_a: UBERON:0002349 ! myocardium [Term] id: UBERON:0002303 name: juxtaglomerular apparatus namespace: uberon alt_id: UBERON:FMA_83599-MA_0002546 def: "An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]." [GO:0072206, Wikipedia:Juxtaglomerular_apparatus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "juxtaglomerular complex" EXACT [] xref: EMAPA:30449 xref: FMA:83599 xref: GAID:432 xref: MA:0002546 xref: MESH:A.05.810.453.736.520.520 xref: SCTID:362219002 xref: ncithesaurus:Juxtaglomerular_Apparatus is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0002304 name: layer of dentate gyrus namespace: uberon alt_id: UBERON:FMA_83678-MA_0002429 comment: This class was created automatically from a combination of ontologies synonym: "dentate gyrus layer" EXACT [] xref: FMA:83678 xref: MA:0002429 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0002305 name: layer of hippocampus namespace: uberon alt_id: UBERON:FMA_83679-MA_0002427 def: "the layers of the laminar structure of the hippocampus." [MP:0000813, Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers] comment: TODO - check NIF xref synonym: "cytoarchitectural fields of hippocampal formation" EXACT [NIF_GrossAnatomy:birnlex_1192] synonym: "hippocampus layer" EXACT [] xref: FMA:83679 xref: MA:0002427 xref: NIF_GrossAnatomy:birnlex_1192 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001954 ! Ammon's horn [Term] id: UBERON:0002306 name: nasal mucus namespace: uberon alt_id: UBERON:FMA_83688-MA_0002535 def: "In the respiratory system mucus aids in the protection of the lungs by trapping foreign particles that enter it, particularly through the nose, during normal breathing. Phlegm is a specialized term for mucus that is restricted to the respiratory tract, while the term mucus more globally describes secretions of the nasal passages as well." [Wikipedia:Nasal_mucus#Respiratory_system] comment: TODO - split nasal vs respiratory tract? subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "respiratory mucus" EXACT [BTO:0003603] xref: BTO:0003603 xref: FMA:83688 xref: MA:0002535 xref: ncithesaurus:Nasal_Mucus is_a: UBERON:0000912 ! mucus is_a: UBERON:0006538 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! respiratory system fluid/secretion [Term] id: UBERON:0002307 name: choroid plexus of lateral ventricle namespace: uberon alt_id: UBERON:FMA_83711-MA_0000961 def: "A choroid plexus that is part of a lateral ventricle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of lateral ventricle" EXACT [] synonym: "choroid plexus telencephalic ventricle" EXACT [ZFA:0001447] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle choroid plexus" EXACT [] xref: EHDAA2:0004449 xref: FMA:83711 xref: MA:0000961 xref: SCTID:70064002 xref: VHOG:0001376 xref: ZFA:0001447 xref: ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002308 name: nucleus of brain namespace: uberon alt_id: UBERON:FMA_83840-MA_0000811 def: "Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia]" [FMA:83840, Wikipedia:Nucleus_(neuroanatomy)] comment: We considered merging with 'neural nucleus' synonym: "brain nucleus" EXACT [] xref: FMA:83840 xref: MA:0000811 xref: SCTID:426465002 xref: ZFA:0005575 xref: ncithesaurus:Brain_Nucleus is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002309 name: medial longitudinal fasciculus namespace: uberon alt_id: UBERON:FMA_83846-ZFA_0000543 def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fasciculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "MLF" RELATED [ZFA:0000543] xref: BTO:0003951 xref: FMA:83846 xref: SCTID:362397001 xref: TAO:0000543 xref: ZFA:0000543 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png is_a: UBERON:0005838 ! fasciculus of brain is_a: UBERON:0002316 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! white matter [Term] id: UBERON:0002310 name: hippocampus fimbria namespace: uberon alt_id: UBERON:FMA_83866-MA_0000949 def: "A prominent band of white matter along the medial edge of the hippocampus[WP]." [Wikipedia:Fimbria_of_hippocampus] comment: This class was created automatically from a combination of ontologies synonym: "fimbria" EXACT [NIF_GrossAnatomy:birnlex_1502] synonym: "fimbria hippocampus" EXACT [] synonym: "fimbria of hippocampus" EXACT [FMA:83866] synonym: "fimbria of the fornix" EXACT [NIF_GrossAnatomy:birnlex_1502] synonym: "fimbria-fornix" EXACT [NIF_GrossAnatomy:birnlex_1502] synonym: "hippocampal fimbria" EXACT [MP:0009324] synonym: "neuraxis fimbria" EXACT [] xref: BM:Tel-FI xref: FMA:83866 xref: MA:0000949 xref: NIF_GrossAnatomy:birnlex_1502 xref: SCTID:369096000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray749.png/200px-Gray749.png xref: ncithesaurus:Fimbria is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001954 ! Ammon's horn [Term] id: UBERON:0002311 name: nodulus of cerebellum namespace: uberon alt_id: UBERON:FMA_83882-MA_0001007 is_obsolete: true replaced_by: UBERON:0004083 ! cerebellum vermis lobule X [Term] id: UBERON:0002313 name: hippocampus pyramidal layer namespace: uberon alt_id: UBERON:0005369 alt_id: UBERON:FMA_83895-MA_0000956 def: "A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames)." [NIF_GrossAnatomy:birnlex_1444] synonym: "hippocampus stratum pyramidale" RELATED [] synonym: "pyramidal cell layer of the hippocampus" EXACT [NIF_GrossAnatomy:birnlex_1444] synonym: "pyramidal layer of hippocampus" EXACT [FMA:83895] synonym: "stratum pyramidale" EXACT [NIF_GrossAnatomy:birnlex_1444] synonym: "stratum pyramidale hippocampi" EXACT [NIF_GrossAnatomy:birnlex_1444] xref: BTO:0001066 xref: FMA:83895 xref: MA:0000956 xref: NIF_GrossAnatomy:birnlex_1444 is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0002314 name: midbrain tectum namespace: uberon alt_id: UBERON:FMA_83902-MA_0000211 def: "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum] comment: In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "mesencephalic tectum" EXACT [ZFA:0000445] synonym: "neuraxis tectum" EXACT [] synonym: "tectum" EXACT [] synonym: "tectum mesencephali" EXACT [BTO:0001793] xref: BM:MB-Tec xref: BTO:0001793 xref: EFO:0000920 xref: EHDAA2:0004474 xref: EMAPA:19051 xref: FMA:83902 xref: MA:0000211 xref: MAT:0000451 xref: NIF_GrossAnatomy:birnlex_1032 xref: SCTID:362394008 xref: VHOG:0001388 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png xref: ncithesaurus:Tectum_Mesencephali is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002315 name: gray matter of spinal cord namespace: uberon alt_id: UBERON:FMA_83926-MA_0000002 def: "the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503] synonym: "gray matter of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "grey matter of spinal cord" EXACT [] synonym: "grey substance of spinal cord" EXACT [] synonym: "spinal cord gray matter" EXACT [OBOL:automatic] synonym: "spinal cord gray matter of neuraxis" EXACT [OBOL:automatic] synonym: "spinal cord grey matter" EXACT [] synonym: "spinal cord grey substance" EXACT [OBOL:automatic] xref: FMA:256580 xref: MA:0000002 xref: NIF_GrossAnatomy:nlx_anat_100204 xref: SCTID:279441003 xref: ncithesaurus:Gray_Matter_of_the_Spinal_Cord is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002316 name: white matter namespace: uberon alt_id: UBERON:FMA_83929-MA_0001135 def: "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "white matter of neuraxis" EXACT [FMA:83929] synonym: "white substance" EXACT [] xref: AEO:0000139 xref: FMA:83929 xref: MA:0001135 xref: NIF_GrossAnatomy:Class_2 xref: OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA xref: ZFA:0001682 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: ncithesaurus:White_Matter is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002317 name: white matter of cerebellum namespace: uberon alt_id: UBERON:FMA_83943-MA_0002430 comment: note that in NIF this is a composite structure; in MA and FMA it is explicitly part of cerebellum. This leads to consistency problems with strict parcellation schemes like ABA, see cerebellar peduncles. In NIF this is a composite structure, this is followed partially here in weakening the relationship to overlaps subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cerebellar white matter" EXACT [] synonym: "cerebellum white matter" EXACT [] xref: FMA:83943 xref: MA:0002430 xref: NIF_GrossAnatomy:birnlex_1562 xref: SCTID:362412009 xref: ZFA:0001708 xref: ncithesaurus:Cerebellum_White_Matter is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! brain white matter relationship: part_of UBERON:0002037 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! cerebellum relationship: part_of UBERON:0002037 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cerebellum [Term] id: UBERON:0002318 name: white matter of spinal cord namespace: uberon alt_id: UBERON:FMA_83945-MA_0000910 def: "the regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008027] comment: This class was created automatically from a combination of ontologies synonym: "spinal cord white matter" EXACT [] synonym: "spinal cord white matter of neuraxis" EXACT [OBOL:automatic] synonym: "spinal cord white substance" EXACT [OBOL:automatic] synonym: "white matter of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "white substance of spinal cord" EXACT [OBOL:automatic] xref: FMA:83945 xref: MA:0000910 xref: SCTID:279436006 xref: ncithesaurus:White_Matter_of_the_Spinal_Cord is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002319 name: mesangium namespace: uberon alt_id: UBERON:FMA_84139-MA_0002617 def: "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [Wikipedia:Mesangium, http://sourceforge.net/tracker/?group_id=76834&atid=974957] comment: WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0002494 xref: EMAPA:28248 xref: FMA:84139 xref: MA:0002617 xref: MESH:A.05.810.453.736.520.380 xref: ncithesaurus:Mesangium is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0005215 ! kidney interstitium [Term] id: UBERON:0002320 name: glomerular mesangium namespace: uberon alt_id: UBERON:FMA_84140-MA_0002606 def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [MESH:A.05.810.453.736.520.380, Wikipedia:Glomerular_mesangium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:27961 xref: EMAPA:28248 xref: FMA:84140 xref: GAID:430 xref: MA:0002606 xref: MESH:A.05.810.453.736.520.380 xref: SCTID:244574009 is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002319 ! mesangium relationship: part_of UBERON:0004190 ! glomerulus vasculature [Term] id: UBERON:0002321 name: extraglomerular mesangium namespace: uberon alt_id: UBERON:FMA_84141-MA_0002602 comment: editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus? xref: EMAPA:28278 xref: FMA:84141 xref: MA:0002602 is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001229 ! renal corpuscle relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus relationship: part_of UBERON:0002319 ! mesangium [Term] id: UBERON:0002322 name: periventricular nucleus namespace: uberon alt_id: UBERON:FMA_84354-ZFA_0000260 def: "." [Wikipedia:Periventricular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ventral zone of periventricular hypothalamus" EXACT [ZFA:0000260] xref: FMA:84354 xref: TAO:0000260 xref: ZFA:0000260 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006569 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic nucleus [Term] id: UBERON:0002323 name: body cavity namespace: uberon alt_id: UBERON:0000169 alt_id: UBERON:FMA_85006-MA_0002447-ZFA_0001438 def: "fluid-filled space between epidermis and outer lining of gut cavity[WP]. In mammals it forms the peritoneal, pleural, and pericardial cavities." [Wikipedia:Body_cavity] comment: editor note: check the FMA placement here; add developmental relationships; check EHDAA2 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "celom" RELATED [BTO:0001707] synonym: "coelom" EXACT [] synonym: "coelome" RELATED [BTO:0001707] synonym: "coelomic cavity" EXACT [EHDAA2:0000267] synonym: "hemocoel" RELATED [FBbt:00005060] synonym: "space of body compartment" EXACT [FMA:85006] synonym: "ventral body cavity" NARROW [] xref: AEO:0000186 xref: BTO:0001707 xref: EHDAA2:0000267 xref: FBbt:00005060 xref: FMA:85006 xref: MA:0002447 xref: RETIRED_EHDAA2:0003186 xref: SCTID:361348008 xref: TAO:0001438 xref: ZFA:0001438 xref: galen:BodyCavity xref: ncithesaurus:Cavity is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0004458 ! body cavity or lining relationship: part_of UBERON:0001009 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! circulatory system relationship: part_of UBERON:0002100 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! trunk [Term] id: UBERON:0002324 name: muscle of back namespace: uberon alt_id: UBERON:FMA_85216-MA_0000496 def: "A muscle organ that is part of a back [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "back muscle" EXACT [] synonym: "back muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of back" EXACT [OBOL:automatic] xref: FMA:85216 xref: MA:0000496 is_a: UBERON:0001774 ! muscle of trunk is_a: UBERON:0005174 ! back organ relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0002325 name: epithelium of urethra namespace: uberon alt_id: UBERON:FMA_85275-MA_0001686 def: "The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes.." [GO:0061071] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of urethra" EXACT [OBOL:automatic] synonym: "urethra epithelial tissue" EXACT [OBOL:automatic] synonym: "urethra epithelium" EXACT [] synonym: "urethral epithelium" RELATED [] xref: FMA:85275 xref: MA:0001686 xref: ncithesaurus:Urethra_Epithelium is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006555 ! excretory tube [Term] id: UBERON:0002326 name: lamina propria of urethra namespace: uberon alt_id: UBERON:FMA_85276-MA_0001689 def: "A lamina propria that is part of a urethra [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "lamina propria mucosa of urethra" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of urethra" EXACT [OBOL:automatic] synonym: "urethra lamina propria" EXACT [] synonym: "urethra lamina propria mucosa" EXACT [OBOL:automatic] synonym: "urethra lamina propria mucosae" EXACT [OBOL:automatic] synonym: "urethral lamina propria" RELATED [] xref: FMA:85276 xref: MA:0001689 is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0002327 name: trunk of intercostal nerve namespace: uberon alt_id: UBERON:FMA_85315-MA_0001176 comment: This class was created automatically from a combination of ontologies synonym: "intercostal nerve trunk" EXACT [] synonym: "intercostal neural trunk" EXACT [] xref: FMA:85315 xref: MA:0001176 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002328 name: notochord namespace: uberon alt_id: UBERON:FMA_85521-XAO_0000055-ZFA_0000135 def: "Avascular multi-tissue structure composed of large vacuolated epithelial cells (chordablasts) and perichordal fibrous tissue[VAO]. The notochord is an elongate, rod-like, skeletal structure dorsal to the gut tube and ventral to the nerve cord. The notochord should not be confused with the backbone or vertebral column of most adult vertebrates. The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB]." [ISBN:0815318960, NLM:notochord, VAO:0000032, Wikipedia:Notochord, ZFIN:curator, http://tolweb.org/Chordata/2499, https://github.com/cmungall/uberon/issues/25] comment: Some organisms retain a post-embryonic notochord subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "embryonic notocord" EXACT [] synonym: "notocord" EXACT [ZFA:0000135] xref: AAO:0000327 xref: BTO:0001768 xref: EHDAA2:0001277 xref: EHDAA:1241 xref: EHDAA:6021 xref: EMAPA:16191 xref: EV:0100002 xref: FMA:85521 xref: GAID:1311 xref: MAT:0000281 xref: MESH:A.16.254.610 xref: SCTID:308820002 xref: TAO:0000135 xref: VAO:0000032 xref: VHOG:0000199 xref: XAO:0000055 xref: ZFA:0000135 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Notochord is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005902 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! occipital region [Term] id: UBERON:0002329 name: somite namespace: uberon alt_id: UBERON:FMA_85522-MIAA_0000068-XAO_0000058-ZFA_0000155 def: "A segmental mass of mesoderm in the vertebrate embryo, occurring in pairs along the notochord and developing into muscles and vertebrae[BTO]. Portion of mesoderm distributed along the two sides of the neural tube and that will eventually become dermis (dermatome), skeletal muscle (myotome), and vertebrae (sclerotome)[WP]. In Zebrafish: Any of the approximately 45 bilaterally paired blocks of mesoderm cells, lying on either side of the notochord and neural tube, and forming sequentially starting at the head during development of the embryo. Together they give rise to the axial skeleton (from the sclerotome), associated musculature (from the myotome), and dermis (from the dermatome). // Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [BTO:0001558, OMD:somite, Wikipedia:Somite, XB:curator, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mesodermal cluster" EXACT [GO:0001756] synonym: "somites" RELATED [] synonym: "somitic mesoderm" RELATED [] xref: AAO:0010569 xref: BTO:0001558 xref: EHDAA2:0003436 xref: EHDAA:366 xref: EHDAA:699 xref: FMA:85522 xref: GAID:1306 xref: MAT:0000068 xref: MESH:A.16.254.425.660.750 xref: MIAA:0000068 xref: TAO:0000155 xref: VHOG:0000191 xref: XAO:0000058 xref: ZFA:0000155 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Somite is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0002330 name: exocrine system namespace: uberon alt_id: UBERON:FMA_85539-MA_0002411 def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_system] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "exocrine glandular system" EXACT [EHDAA2:0002225] xref: EHDAA2:0002225 xref: FMA:85539 xref: MA:0002411 xref: ncithesaurus:Exocrine_System is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002331 name: umbilical cord namespace: uberon alt_id: UBERON:FMA_85541-MIAA_0000280 def: "The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta. Conversely, the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." [Wikipedia:Umbilical_cord] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "birth cord" RELATED [Wikipedia:Umbilical_cord] synonym: "connecting stalk" RELATED [] synonym: "yolk stalk" RELATED [BTO:0001415] xref: BTO:0001415 xref: EFO:0001415 xref: EHDAA2:0000312 xref: EHDAA:158 xref: EMAPA:26115 xref: EV:0100127 xref: FMA:85541 xref: GAID:517 xref: MAT:0000280 xref: MESH:A.16.254.789 xref: MIAA:0000280 xref: OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA xref: SCTID:280644003 xref: ncithesaurus:Umbilical_Cord is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0002333 name: pulmonary trunk namespace: uberon alt_id: UBERON:FMA_8612-MA_0002033 def: "Pulmonary arterial trunk which is continuous with the right ventricle.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_trunk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pulmonary artery (trunk)" EXACT [] synonym: "trunk of pulmonary arterial tree" EXACT [] xref: EFO:0001399 xref: EHDAA2:0001576 xref: EHDAA:9831 xref: EMAPA:17015 xref: EMAPA:18240 xref: FMA:8612 xref: MA:0002033 xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA xref: VHOG:0001134 xref: galen:PulmonaryTrunk xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001637 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! artery relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0002334 name: submandibular duct namespace: uberon alt_id: UBERON:FMA_86266-MA_0002698 def: "The submandibular duct (Wharton's duct, submaxillary duct) is one of the salivary ducts. It is about 5 cm. long, and its wall is much thinner than that of the parotid duct. It begins by numerous branches from the deep surface of the gland, and runs forward between the mylohyoideus, hyoglossus, and genioglossus, then between the sublingual gland and the genioglossus, and opens by a narrow orifice on the summit of a small at the side of the frenulum linguC&. On the hyoglossus it lies between the lingual and hypoglossal nerves, but at the anterior border of the muscle it is crossed laterally by the lingual nerve; the terminal branches of the lingual nerve ascend on its medial side. It drains saliva from the submandibular glands and sublingual glands to the sublingual caruncle at the base of the tongue. It was initially described by the English anatomist Thomas Wharton and sometimes referred to by his name. [WP,unvetted]." [Wikipedia:Submandibular_duct] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "submandibular salivary duct" RELATED [] synonym: "submaxillary duct" RELATED [] xref: BTO:0004556 xref: FMA:86266 xref: MA:0002698 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png xref: ncithesaurus:Submandibular_Duct is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0002335 name: macula densa namespace: uberon alt_id: UBERON:FMA_86333-MA_0002603 def: "The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO].." [GO:0072024, Wikipedia:Macula_densa] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0003940 xref: FMA:86333 xref: MA:0002603 xref: SCTID:244657003 xref: ncithesaurus:Macula_Densa is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus [Term] id: UBERON:0002336 name: corpus callosum namespace: uberon alt_id: UBERON:FMA_86464-MA_0000188-MIAA_0000286 def: "The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BM:Tel-CC xref: BTO:0000615 xref: EFO:0001390 xref: EV:0100305 xref: FMA:86464 xref: GAID:683 xref: MA:0000188 xref: MAT:0000286 xref: MESH:A.08.186.211.730.885.362 xref: MIAA:0000286 xref: NIF_GrossAnatomy:birnlex_1087 xref: OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA xref: SCTID:362354006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png xref: ncithesaurus:Corpus_Callosum is_a: UBERON:0002473 ! intercerebral commissure is_a: UBERON:0005340 ! dorsal telencephalic commissure [Term] id: UBERON:0002337 name: endometrial stroma namespace: uberon alt_id: UBERON:FMA_86487-MA_0002734 comment: This class was created automatically from a combination of ontologies synonym: "endometrium stroma" EXACT [] synonym: "stroma of endometrium" EXACT [] xref: FMA:86487 xref: MA:0002734 xref: SCTID:254115004 xref: ncithesaurus:Endometrial_Stroma is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001295 ! endometrium [Term] id: UBERON:0002338 name: lamina propria of bronchus namespace: uberon alt_id: UBERON:FMA_86619-MA_0001836 def: "A lamina propria that is part of a bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchi lamina propria" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosae" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria mucosae" EXACT [OBOL:automatic] synonym: "bronchus lamina propria" EXACT [] synonym: "bronchus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchus lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchus" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchus" EXACT [OBOL:automatic] synonym: "lamina propria of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria of bronchial trunk" EXACT [OBOL:automatic] xref: FMA:86619 xref: MA:0001836 xref: ncithesaurus:Bronchus_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004779 ! respiratory system lamina propria is_a: UBERON:0003592 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! bronchus connective tissue relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0002339 name: epithelium of lobar bronchus namespace: uberon alt_id: UBERON:FMA_86624-MA_0001842 def: "the tissue made up of epithelial cells that lines the inside of the lobar bronchus." [GO:0060481] synonym: "epithelial tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of secondary bronchus" EXACT [OBOL:automatic] synonym: "lobar bronchial epithelium" EXACT [] synonym: "lobar bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "lobar bronchus epithelium" EXACT [] synonym: "secondary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "secondary bronchus epithelium" EXACT [OBOL:automatic] xref: EMAPA:17390 xref: EMAPA:17658 xref: EMAPA:17666 xref: EMAPA:17984 xref: EMAPA:17989 xref: EMAPA:17994 xref: EMAPA:18000 xref: FMA:86624 xref: MA:0001842 is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0002031 ! epithelium of bronchus [Term] id: UBERON:0002340 name: epithelium of main bronchus namespace: uberon alt_id: UBERON:0003245 alt_id: UBERON:FMA_86625-MA_0001847 def: "An epithelium that is part of a main bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchus principalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "epithelial tissue of main bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "epithelium of bronchus principalis" EXACT [OBOL:automatic] synonym: "epithelium of primary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchial epithelium" EXACT [] synonym: "main bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "main bronchus epithelium" EXACT [] synonym: "primary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "primary bronchus epithelium" EXACT [OBOL:automatic] synonym: "principal bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "principal bronchus epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001047 xref: EHDAA:5003 xref: EMAPA:16851 xref: FMA:86625 xref: MA:0001847 xref: VHOG:0001034 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0002341 name: epithelium of segmental bronchus namespace: uberon alt_id: UBERON:FMA_86626-MA_0001850 def: "An epithelium that is part of a segmental bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic] synonym: "segmental bronchial epithelium" EXACT [] synonym: "segmental bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "segmental bronchus epithelium" EXACT [] synonym: "tertiary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "tertiary bronchus epithelium" EXACT [OBOL:automatic] xref: FMA:86626 xref: MA:0001850 is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0002342 name: neural crest namespace: uberon alt_id: UBERON:FMA_86666-MIAA_0000066-XAO_0000048-ZFA_0000045 def: "The neural crest, a transient component of the ectoderm, is located in between the neural tube and the epidermis (or the free margins of the neural folds) of an embryo during neural tube formation. Neural crest cells quickly migrate during or shortly after neurulation, an embryological event marked by neural tube closure." [Wikipedia:Neural_crest] comment: Editor note: consider including subclasses for pre- and post- migratory. Taxon notes: A well developed neural crest population is present in lampreys (Horigome et al. 1999 ; Tomsa & Langeland, 1999) and gnathostomes. chordate fos- sils from the early Cambrian (Yunnanozoan and Haikouella) with apparent neural-crest derived struc- tures (pharyngeal denticles and pharyngeal skeletons resembling the striped mucocartilage of the branchial bars in lamprey ammocoete larvae), suggests that neural crest arose very early in vertebrate evolution (Chen et al. 1999; Holland & Chen, 2001). The invertebrate chordates apparently lack defini- tive neural crest. One marker of migrating neural crest in some vertebrates, the antibody HNK1, does not recognize any cells in amphioxus embryos (Holland, unpublished). Even so, in both amphioxus and tunicates, cells at the edges of the neural plate and adjacent nonneural ectoderm share some properties of neural crest[PMID:11523831]. Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010578 xref: BTO:0001764 xref: EHDAA2:0004419 xref: FMA:86666 xref: GAID:1310 xref: MAT:0000066 xref: MESH:A.16.254.600 xref: MIAA:0000066 xref: SCTID:361462002 xref: TAO:0000045 xref: VHOG:0000057 xref: XAO:0000048 xref: ZFA:0000045 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray644.png/200px-Gray644.png xref: ncithesaurus:Neural_Crest is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: UBERON:0002343 name: abdomen musculature namespace: uberon alt_id: UBERON:FMA_86917-ZFA_0001327 def: "Set of all muscles in abdomen." [OBOL:automatic] comment: note distinction between abdomen muscle and abdomen musculature subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "abdominal musculature" EXACT [] synonym: "muscle group of abdomen" EXACT [FMA:71294] synonym: "muscles of abdomen" EXACT [FMA:71294] synonym: "musculature of abdomen" EXACT [] synonym: "musculature of abdominal wall" EXACT [FMA:86917] xref: FMA:71294 xref: FMA:86917 xref: TAO:0001327 xref: ZFA:0001327 is_a: UBERON:0001015 ! musculature is_a: UBERON:0004479 ! musculature of trunk is_a: UBERON:0001774 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle of trunk [Term] id: UBERON:0002345 name: descending thoracic aorta namespace: uberon alt_id: UBERON:FMA_87217-MA_0002572 def: "the part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [MP:0009868] comment: This class was created automatically from a combination of ontologies xref: EFO:0002527 xref: EMAPA:18605 xref: FMA:87217 xref: MA:0002572 xref: SCTID:181301002 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001514 ! descending aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0002346 name: neurectoderm namespace: uberon alt_id: UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120 def: "Embryonic ectoderm that gives rise to nervous tissue." [Wikipedia:Neuroectoderm] comment: Terminology notes: we prefer neurectoderm to neural ectoderm since placodal ectoderm is not classified here subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "neuaral ectoderm" RELATED [] synonym: "neural ectoderm" EXACT [] synonym: "neuroectoderm" EXACT [] synonym: "presumptive central nervous system" RELATED [] xref: AAO:0000469 xref: BILA:0000039 xref: EHDAA2:0001248 xref: EHDAA:1498 xref: EHDAA:255 xref: EMAPA:16073 xref: EV:0100004 xref: FBbt:00001061 xref: FMA:87657 xref: MAT:0000176 xref: MIAA:0000176 xref: TAO:0001120 xref: VHOG:0000150 xref: XAO:0000042 xref: ZFA:0001120 xref: ncithesaurus:Neuroectoderm is_a: UBERON:0000923 ! germ layer is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0000483 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! epithelium [Term] id: UBERON:0002347 name: thoracic vertebra namespace: uberon alt_id: UBERON:FMA_9139-MA_0000314 def: "In humans, the 12 thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. They are intermediate in size between those of the cervical and lumbar regions; they increase in size as one proceeds down the spine, the upper vertebrae being much smaller than those in the lower part of the region. They are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs. [WP,unvetted]." [Wikipedia:Thoracic_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal vertebra" EXACT [] synonym: "thorax vertebra" EXACT [OBOL:automatic] synonym: "vertebra of thorax" EXACT [OBOL:automatic] synonym: "vertebra thoracica" EXACT [] xref: EMAPA:18011 xref: FMA:9139 xref: GAID:244 xref: MA:0000314 xref: MESH:A.02.835.232.834.892 xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA xref: SCTID:181821009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png xref: ncithesaurus:Thoracic_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0004451 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! presacral vertebra relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0002348 name: epicardium namespace: uberon alt_id: UBERON:FMA_9461-XAO_0000316-ZFA_0005057 def: "Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium[FMA]. External layer of the heart[ZFA]." [Wikipedia:Epicardium, ZFIN:curator] comment: TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "heart epicardium" EXACT [] synonym: "visceral serous pericardium of heart" EXACT [] synonym: "visceral serous pericardium proper" EXACT [FMA:9461] xref: AAO:0010409 xref: EHDAA2:0002202 xref: FMA:9461 xref: TAO:0005057 xref: VHOG:0000119 xref: XAO:0000316 xref: ZFA:0005057 xref: galen:Epicardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: ncithesaurus:Epicardium is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002425 ! visceral serous pericardium relationship: develops_from UBERON:0003084 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! heart primordium [Term] id: UBERON:0002349 name: myocardium namespace: uberon alt_id: UBERON:FMA_9462-MA_0000164-XAO_0000065-ZFA_0001319 def: "middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]." [Wikipedia:Myocardium] comment: TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac muscle" RELATED [ZFA:0001319] synonym: "heart muscle " RELATED [ZFA:0001319] synonym: "heart myocardium" EXACT [] synonym: "muscle of heart" EXACT [FMA:9462] xref: AAO:0010410 xref: BTO:0000901 xref: EFO:0000819 xref: EHDAA2:0004150 xref: EV:0100022 xref: FMA:9462 xref: GAID:173 xref: MA:0000164 xref: MAT:0000453 xref: MESH:A.02.633.580 xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw xref: RETIRED_EHDAA2:0001220 xref: SCTID:362012001 xref: TAO:0001319 xref: VHOG:0000083 xref: XAO:0000065 xref: ZFA:0001319 xref: galen:Myocardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Glanzstreifen.jpg/200px-Glanzstreifen.jpg xref: ncithesaurus:Myocardium is_a: UBERON:0005983 ! heart layer is_a: UBERON:0001133 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cardiac muscle tissue relationship: part_of UBERON:0000383 ! musculature of body relationship: part_of UBERON:0000948 ! heart relationship: develops_from UBERON:0003084 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! heart primordium [Term] id: UBERON:0002350 name: conducting system of heart namespace: uberon alt_id: UBERON:FMA_9476-ZFA_0005063 def: " The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO]" [GO:0003161] comment: Editor notes: EHDAA2 divides the system from the tissue subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cardiac conduction system" EXACT [] synonym: "cardiac impulse conducting system" EXACT [GO:0003161] synonym: "cardionector" EXACT [] synonym: "central conduction system" RELATED [] synonym: "heart conduction system" EXACT [GO:0003161] synonym: "impulse conducting system" EXACT [MA:0000094] xref: EFO:0003909 xref: EHDAA2:0004185 xref: EV:0100025 xref: FMA:9476 xref: MA:0000094 xref: MESH:A.07.541.409 xref: SCTID:281489000 xref: TAO:0005063 xref: VHOG:0001271 xref: ZFA:0005063 is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 ! conducting tissue of heart relationship: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0002351 name: sinoatrial node namespace: uberon alt_id: UBERON:FMA_9477-MA_0000097-ZFA_0005069 def: "The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node] comment: WP:Heart states: \"The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.\". Note however that ZFA has SA node. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Koch's node" EXACT [FMA:9477] synonym: "SA nodal muscle tissue" EXACT [FMA:9477] synonym: "SA node" EXACT [FMA:9477] synonym: "cardiac pacemaker" EXACT [FMA:9477] synonym: "node of Keith-Flack" EXACT [FMA:9477] synonym: "nodus sinuatrialis" EXACT [FMA:9477, FMA:TA] synonym: "sinoatrial node" EXACT [FMA:9477] synonym: "sinu-atrial node" EXACT [FMA:9477] synonym: "sinuatrial nodal muscle tissue" EXACT [FMA:9477] synonym: "sinuatrial node" EXACT [FMA:9477] synonym: "sinus node" EXACT [FMA:9477] synonym: "sinus node of Keith and Flack" EXACT [FMA:9477] xref: BTO:0004358 xref: EHDAA2:0004184 xref: FMA:9477 xref: GAID:561 xref: MA:0000097 xref: MESH:A.07.541.409.819 xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g xref: SCTID:277687007 xref: TAO:0005069 xref: ZFA:0005069 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Sinoatrial_node_low_mag.jpg/200px-Sinoatrial_node_low_mag.jpg xref: ncithesaurus:Sinoatrial_Node is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002350 ! conducting system of heart relationship: part_of UBERON:0002081 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cardiac atrium [Term] id: UBERON:0002352 name: atrioventricular node namespace: uberon alt_id: UBERON:FMA_9478-MA_0000095-ZFA_0005070 def: "Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle.[FMA]" [FMA:FMA, Wikipedia:Atrioventricular_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "aschoff-tawara node" EXACT [] synonym: "atrioventricular nodal muscle tissue" EXACT [] synonym: "av nodal muscle tissue" EXACT [] synonym: "av node" EXACT [] synonym: "node of tawara" EXACT [] xref: EFO:0000276 xref: EHDAA2:0004183 xref: FMA:9478 xref: GAID:558 xref: MA:0000095 xref: MAT:0000498 xref: MESH:A.07.541.409.147 xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g xref: SCTID:277688002 xref: TAO:0005070 xref: VHOG:0001474 xref: ZFA:0005070 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray501.png/200px-Gray501.png xref: ncithesaurus:Atrioventricular_Node is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004490 ! cardiac muscle tissue of atrium is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002350 ! conducting system of heart relationship: part_of UBERON:0002087 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! atrioventricular canal [Term] id: UBERON:0002353 name: atrioventricular bundle namespace: uberon alt_id: UBERON:FMA_9484-MA_0002576 def: "Subdivision of conducting system of heart which consists of the atrial part and the ventricular part of the atrioventricular bundle and is the direct continuation of the atrioventricular node.[FMA]" [FMA:FMA, Wikipedia:Bundle_of_His] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "His bundle" EXACT [] synonym: "atrioventricular bundle muscle tissue" EXACT [FMA:9484] synonym: "atrioventricular fasciculus" EXACT [FMA:9484] synonym: "bundle of His" EXACT [FMA:9484] xref: FMA:9484 xref: GAID:559 xref: MA:0002576 xref: MESH:A.07.541.409.273 xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g xref: SCTID:362022007 xref: galen:BundleOfHis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/ECG_Principle_fast.gif/200px-ECG_Principle_fast.gif xref: ncithesaurus:Atrioventricular_Bundle is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002350 ! conducting system of heart relationship: part_of UBERON:0004146 ! His-Purkinje system [Term] id: UBERON:0002354 name: purkinje fiber namespace: uberon alt_id: UBERON:FMA_9492-MA_0000096 def: "Conducting tissue of heart which consists of Purkinje myocytes.[FMA]" [FMA:FMA, Wikipedia:Purkinje_fiber] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "myofibra conducens cardiacus" EXACT [] xref: FMA:9492 xref: GAID:560 xref: MA:0000096 xref: MESH:A.07.541.409.683 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png xref: ncithesaurus:Purkinje_Fiber is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium is_a: UBERON:0010131 ! conducting tissue of heart relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0002355 name: pelvis namespace: uberon alt_id: UBERON:FMA_9578-MA_0000030 def: "Subdivision of abdomen, which is demarcated from the abdomen proper by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the abdomen proper, it constitutes the abdomen[FMA]." [FMA:9578, Wikipedia:Pelvis] comment: Note that MA and FMA differ in what they consider to be parts of the pelvis. MA includes ureter, urethra, urinary bladder, reproductive organs subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lesser pelvis" EXACT [FMA:9578] synonym: "true pelvis" EXACT [FMA:9578] xref: BTO:0001006 xref: EFO:0002805 xref: EV:0100012 xref: FMA:9578 xref: GAID:87 xref: MA:0000030 xref: MESH:A.01.673 xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA xref: SCTID:229765004 xref: galen:Pelvis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png xref: ncithesaurus:Pelvis is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0002356 name: perineum namespace: uberon alt_id: UBERON:FMA_9579-MA_0002466 def: "Subdivision of trunk, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]." [FMA:9579, Wikipedia:Perineum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "perineal region" EXACT [] synonym: "regio perinealis" EXACT [FMA:9579, FMA:TA] xref: EHDAA2:0004015 xref: EV:0100013 xref: FMA:9579 xref: GAID:90 xref: MA:0002466 xref: MESH:A.01.719 xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA xref: SCTID:243990009 xref: galen:Perineum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Gray406.png/200px-Gray406.png xref: ncithesaurus:Perineum is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0002357 name: serous pericardium namespace: uberon alt_id: UBERON:FMA_9582-MA_0002739 def: "Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity." [Wikipedia:Serous_pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "serous portion of pericardium" EXACT [] xref: FMA:9582 xref: MA:0002739 xref: SCTID:243954002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005983 ! heart layer relationship: part_of UBERON:0002406 ! pericardial sac [Term] id: UBERON:0002358 name: peritoneum namespace: uberon alt_id: UBERON:FMA_9584-XAO_0000139-ZFA_0005120 def: "A serous membrane that forms the lining of the abdominal cavity or the coelom b it covers most of the intra-abdominal (or coelomic) organs b in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]. The smooth transparent serous membrane that lines the cavity of the abdomen of a mammal and is folded inward over the abdominal and pelvic viscera[BTO]. The endothelial lining of the ABDOMINAL CAVITY. The parietal peritoneum covers the inside of the ABDOMINAL WALL and the visceral peritoneum covers the bowel, the MESENTERY, and certain of the organs. The portion that covers the bowel becomes the serosal layer of the bowel wall[GAID]." [Wikipedia:Peritoneum, ZFIN:curator] comment: TODO - in ZFA is_a epithelium subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010814 xref: BTO:0001472 xref: EV:0100087 xref: FMA:9584 xref: GAID:18 xref: MESH:A.01.047.025.600 xref: OpenCyc:Mx4rvjJ72ZwpEbGdrcN5Y29ycA xref: TAO:0005120 xref: VHOG:0001257 xref: XAO:0000139 xref: ZFA:0005120 xref: galen:Peritoneum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png xref: ncithesaurus:Peritoneum is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0003684 ! abdominal cavity relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! digestive system [Term] id: UBERON:0002359 name: fibrous pericardium namespace: uberon alt_id: UBERON:FMA_9586-MA_0002738 def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]" [FMA:FMA, Wikipedia:Fibrous_pericardium] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fibrous portion of pericardium" EXACT [] xref: EMAPA:19029 xref: FMA:9586 xref: MA:0002738 xref: SCTID:243953008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0002360 name: meninx namespace: uberon alt_id: UBERON:FMA_9589-MA_0001113 def: "Membrane organ that surrounds the brain and the spinal cord // Wikipedia: system of membranes which envelops the central nervous system. Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). The area between the dura mater and the arachnoid layer is called the subdural space; the area between the arachnoid layer is called the subarachnoid space. An additional layer of tissue lies between the two hemispheres of the cerebrum and is called the falx cerebri. " [Wikipedia:Meninx, http://www.shsu.edu/~bio_mlt/Chap15.html] comment: Editor note: consider separate term for meninges aka collection of meninges. Note in EHDAA2 pia mater etc are part of the meninges. Also consider a new class for primary/primitive meninx. AO notes: Not consider part of the CNS/neuraxis in FMA subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "layer of meninges" EXACT [] synonym: "meninges" EXACT PLURAL [] xref: BTO:0000144 xref: EFO:0000584 xref: EFO:0000867 xref: EHDAA2:0004661 xref: EV:0100312 xref: FMA:9589 xref: GAID:687 xref: MA:0001113 xref: MAT:0000113 xref: MESH:A.08.186.566 xref: NIF_GrossAnatomy:nlx_anat_090204 xref: OpenCyc:Mx4rwDOl8JwpEbGdrcN5Y29ycA xref: SCTID:362879001 xref: VHOG:0001295 xref: ZFA:0001355 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_meninges.jpg/200px-Illu_meninges.jpg xref: ncithesaurus:Meninges is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0002342 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural crest [Term] id: UBERON:0002361 name: pia mater namespace: uberon alt_id: UBERON:FMA_9590-MA_0001116 def: "delicate innermost layer of the meningesbthe membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative." [Wikipedia:Pia_mater] comment: Editor note: consider adding adjacency relationship to neuraxis (brain+spinal cord); however note that at this time the meninges may be considered part of the nervous system subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pia mater of neuraxis" EXACT [] synonym: "pial membrane" EXACT [NIF_GrossAnatomy:nlx_anat_090209] xref: BTO:0001635 xref: EHDAA2:0004318 xref: EHDAA:1367 xref: EHDAA:1961 xref: EHDAA:2001 xref: EHDAA:2099 xref: EHDAA:2685 xref: EHDAA:2833 xref: EHDAA:2867 xref: EHDAA:3692 xref: EHDAA:3710 xref: EHDAA:6566 xref: EHDAA:6583 xref: EV:0100315 xref: FMA:9590 xref: GAID:693 xref: MA:0001116 xref: MESH:A.08.186.566.731 xref: NIF_GrossAnatomy:nlx_anat_090209 xref: OpenCyc:Mx4rvtesBZwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001464 xref: SCTID:362305004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray770.png/200px-Gray770.png xref: ncithesaurus:Pia_Mater is_a: UBERON:0000391 ! leptomeninx [Term] id: UBERON:0002362 name: arachnoid mater namespace: uberon alt_id: UBERON:FMA_9591-MA_0001114 def: "One of the three meninges, the membranes that cover the brain and spinal cord. It is interposed between the two other meninges, the more superficial dura mater and the deeper pia mater, and is separated from the pia mater by the subarachnoid space." [Wikipedia:Arachnoid_mater] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arachnoid" EXACT [] synonym: "arachnoid mater of neuraxis" EXACT [] synonym: "arachnoid membrane" EXACT [NIF_GrossAnatomy:nlx_anat_090208] synonym: "arachnoidea mater" RELATED [BTO:0001636] xref: BTO:0001636 xref: EV:0100314 xref: FMA:9591 xref: GAID:688 xref: MA:0001114 xref: MESH:A.08.186.566.166 xref: NIF_GrossAnatomy:nlx_anat_090208 xref: OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA xref: SCTID:362304000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray767.png/200px-Gray767.png xref: ncithesaurus:Arachnoid_Membrane is_a: UBERON:0000391 ! leptomeninx [Term] id: UBERON:0002363 name: dura mater namespace: uberon alt_id: UBERON:FMA_9592-MA_0001115 def: "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid." [Wikipedia:Dura_mater] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dura" RELATED [BTO:0001637] synonym: "dura mater of neuraxis" EXACT [] synonym: "pachymeninges" EXACT [NIF_GrossAnatomy:nlx_anat_090206] xref: BTO:0001637 xref: EMAPA:17776 xref: EV:0100313 xref: FMA:9592 xref: GAID:691 xref: MA:0001115 xref: MESH:A.08.186.566.395 xref: NIF_GrossAnatomy:nlx_anat_090206 xref: OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA xref: SCTID:362301008 xref: ncithesaurus:Dura_Mater is_a: UBERON:0002360 ! meninx is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002360 ! meninx [Term] id: UBERON:0002364 name: tympanic membrane namespace: uberon alt_id: UBERON:FMA_9595-MA_0000257 def: "A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [PMID:11237469, Wikipedia:Tympanic_membrane] comment: most AOs consider this part of the middle ear, so we go with this and place it in the middle ear as a border to the external, although it could be considered to overlap the external ear in that it has an EAM layer as part - for this reason we do not consider middle and external ear to be spatially disjoint. Development notes: The tympanic membrane (TM) has three layers, two epithelia provided by the external acoustic meatus (EAM) and the MEC, derived respectively from the first pharyngeal cleft and pouch, and a mesenchymally derived fibrous stratum[PMID:11237469] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Rivinus' membrane" EXACT [] synonym: "ear drum" EXACT [] synonym: "eardrum" EXACT [] synonym: "lateral wall of tympanic cavity" EXACT [] synonym: "membranous wall of tympanic cavity" EXACT [] synonym: "myrinx" EXACT [] synonym: "paries membranaceus cavi tympani" EXACT [FMA:9595, FMA:TA] synonym: "tympanum" RELATED [Wikipedia:Tympanic_membrane] xref: EV:0100358 xref: FMA:9595 xref: GAID:870 xref: MA:0000257 xref: MESH:A.09.246.397.873 xref: SCTID:181180005 xref: VHOG:0001146 xref: XAO:0000212 xref: ncithesaurus:Tympanic_Membrane is_a: UBERON:0000094 ! membrane organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0002365 name: exocrine gland namespace: uberon alt_id: UBERON:FMA_9596-MA_0002564 def: "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas" [Wikipedia:Exocrine_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ducted gland" EXACT [] synonym: "exocrine gland" EXACT [] synonym: "glandula exocrina" EXACT [] xref: AEO:0000097 xref: BTO:0000765 xref: EHDAA2:0003097 xref: FMA:9596 xref: GAID:34 xref: MA:0002564 xref: MESH:A.10.336 xref: ncithesaurus:Exocrine_Gland is_a: UBERON:0002530 ! gland [Term] id: UBERON:0002366 name: bulbo-urethral gland namespace: uberon alt_id: UBERON:FMA_9599-MA_0000401 def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the bulbar part of the urethra. Examples: There only two instances, right and left bulbo-urethral glands.[FMA]" [FMA:FMA, Wikipedia:Bulbo-urethral_gland] comment: Structure notes: The bulbourethral glands are compound tubulo-alveolar glands. subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Cowper's gland" EXACT [] synonym: "Cowper's glands" EXACT [] synonym: "bulbourethral gland" EXACT [] xref: BTO:0001698 xref: EMAPA:19286 xref: FMA:9599 xref: GAID:387 xref: MA:0000401 xref: MESH:A.05.360.444.123 xref: SCTID:278918009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png is_a: UBERON:0010147 ! male accessory sex gland is_a: UBERON:0010186 ! male urethral gland relationship: part_of UBERON:0001333 ! male urethra relationship: part_of UBERON:0002330 ! exocrine system property_value: "homologous_to" UBERON:0000460 [Term] id: UBERON:0002367 name: prostate gland namespace: uberon alt_id: UBERON:FMA_9600-MA_0000404-MIAA_0000078 def: "The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid." [GO:0030850, Wikipedia:Prostate] comment: TODO - FMA treats the gland as part of the prostate - see also FMA:74119. subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "male prostate" EXACT [PMID:10668204] synonym: "prostate" EXACT [] xref: BTO:0001129 xref: EFO:0000858 xref: EMAPA:19287 xref: EV:0100104 xref: FMA:9600 xref: GAID:392 xref: MA:0000404 xref: MAT:0000078 xref: MESH:A.05.360.444.575 xref: MIAA:0000078 xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA xref: SCTID:181422007 xref: VHOG:0001261 xref: galen:ProstateGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Prostatelead.jpg/200px-Prostatelead.jpg xref: ncithesaurus:Prostate_Gland is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0010147 ! male accessory sex gland is_a: UBERON:0002365 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! exocrine gland [Term] id: UBERON:0002368 name: endocrine gland namespace: uberon alt_id: UBERON:FMA_9602-MA_0002563 def: "Endocrine glands are glands of the endocrine system that secrete their products, hormones, directly into the blood rather than through a duct. The main endocrine glands include the pituitary gland, pancreas, ovaries, testes, thyroid gland, and adrenal glands. The hypothalamus is a neuroendocrine organ. Other organs which are not so well known for their endocrine activity include the stomach, which produces such hormones as ghrelin[WP]." [Wikipedia:Endocrine_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ductless gland" EXACT [] synonym: "glandula endocrina" EXACT [] xref: AEO:0000098 xref: BTO:0001488 xref: EHDAA2:0003098 xref: FMA:9602 xref: GAID:335 xref: MA:0002563 xref: MESH:A.06.407 xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA xref: SCTID:40818001 xref: ncithesaurus:Endocrine_Gland is_a: UBERON:0002530 ! gland [Term] id: UBERON:0002369 name: adrenal gland namespace: uberon alt_id: UBERON:FMA_9604-MA_0000116-MIAA_0000071-XAO_0000164 def: "Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]." [BTO:0000047, Wikipedia:Adrenal_gland] comment: Taxon notes: The origin of the adrenal gland is still controversial. It is thought to share the same origin as the kidney and gonads, derived from coelomic epithelium of the urogenital ridge and/or the underlying mesenchyme (Keegan and Hammer, 2002; Morohashi, 1997). We follow Kardong and state homology at the level of the cortex and medulla rather than gland as a whole subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adrenal" RELATED [BTO:0000047] synonym: "adrenal capsule" RELATED [BTO:0000047] synonym: "adrenal medulla cell" RELATED [] synonym: "atrabiliary capsule" RELATED [BTO:0000047] synonym: "epinephros" RELATED [BTO:0000047] synonym: "glandula suprarenalis" RELATED [BTO:0000047] synonym: "interrenal gland" RELATED HOMOLOGY [GO:0030325] synonym: "suprarenal capsule" RELATED [BTO:0000047] synonym: "suprarenal gland" RELATED [] xref: AAO:0010551 xref: BTO:0000047 xref: EFO:0000238 xref: EMAPA:18426 xref: EV:0100135 xref: FMA:9604 xref: GAID:446 xref: MA:0000116 xref: MAT:0000071 xref: MESH:A.06.407.071 xref: MIAA:0000071 xref: OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA xref: SCTID:181127006 xref: VHOG:0001141 xref: XAO:0000164 xref: galen:AdrenalGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Illu_endocrine_system.jpg/200px-Illu_endocrine_system.jpg xref: ncithesaurus:Adrenal_Gland is_a: UBERON:0006858 ! adrenal/interrenal gland relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0002370 name: thymus namespace: uberon alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078 def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus] comment: check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "thymus gland" EXACT [] xref: AAO:0010548 xref: BTO:0001374 xref: EFO:0000860 xref: EHDAA2:0002017 xref: EHDAA:9119 xref: EMAPA:18768 xref: EV:0100138 xref: FMA:9607 xref: GAID:464 xref: MA:0000142 xref: MAT:0000080 xref: MESH:A.06.407.850 xref: MIAA:0000080 xref: OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA xref: SCTID:118507000 xref: TAO:0001078 xref: VHOG:0000253 xref: XAO:0000163 xref: ZFA:0001078 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Illu_thymus.jpg/200px-Illu_thymus.jpg xref: ncithesaurus:Thymus_Gland is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0005058 ! hemolymphoid system gland is_a: UBERON:0005178 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! thoracic cavity organ relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system relationship: part_of UBERON:0009113 ! thymic region [Term] id: UBERON:0002371 name: bone marrow namespace: uberon alt_id: UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669 def: "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]." [Wikipedia:Bone_marrow] comment: TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system. also consider adding as subclass of zone of bone organ for consistency with FMA. See also: Leydig and epigonal organs subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior kidney" RELATED [] synonym: "head kidney" BROAD [] synonym: "kidney marrow" RELATED [] synonym: "medulla of bone" RELATED [BTO:0000141] synonym: "medulla ossea" EXACT [] synonym: "medulla ossium" RELATED [BTO:0000141] xref: AAO:0011007 xref: BTO:0000141 xref: BTO:0000829 xref: EFO:0000868 xref: EV:0100046 xref: FMA:9608 xref: GAID:1287 xref: MA:0000134 xref: MAT:0000084 xref: MESH:A.15.382.216 xref: MIAA:0000084 xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA xref: SCTID:421320006 xref: VHOG:0001218 xref: XAO:0000123 xref: galen:BoneMarrow xref: ncithesaurus:Bone_Marrow is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0002372 name: tonsil namespace: uberon alt_id: UBERON:FMA_9609-MA_0000143 def: "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil] comment: Most commonly, the term \"tonsils\" refers to the palatine tonsils that can be seen in the back of the throat. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Mandel" RELATED [BTO:0001387] xref: BTO:0001387 xref: EFO:0001401 xref: EV:0100052 xref: FMA:9609 xref: GAID:341 xref: MA:0000143 xref: MESH:A.03.867.603.925 xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA xref: VHOG:0001139 xref: ncithesaurus:Tonsil is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0001735 ! tonsillar ring disjoint_from: UBERON:0005351 ! paraflocculus [Term] id: UBERON:0002373 name: palatine tonsil namespace: uberon alt_id: UBERON:FMA_9610-MA_0000775-MIAA_0000291 def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil] comment: Development notes: tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches[ISBN10:1607950324] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "faucial tonsil" EXACT [] xref: BTO:0004714 xref: EFO:0001977 xref: EV:0100393 xref: FMA:9610 xref: MA:0000775 xref: MAT:0000291 xref: MIAA:0000291 xref: SCTID:265787001 xref: VHOG:0001140 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Illu_mouth.jpg/200px-Illu_mouth.jpg xref: ncithesaurus:Palatine_Tonsil is_a: UBERON:0002372 ! tonsil [Term] id: UBERON:0002374 name: metacarpal bone namespace: uberon alt_id: UBERON:FMA_9612-MA_0000302 def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpal_bone] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "metacarpal" EXACT [] xref: EFO:0003886 xref: FMA:9612 xref: MA:0000302 xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA xref: SCTID:181977005 xref: galen:Metacarpal xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png xref: ncithesaurus:Metacarpal_Bone is_a: UBERON:0002495 ! long bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0003821 ! metacarpal/metatarsal bone is_a: UBERON:0005897 ! hand bone [Term] id: UBERON:0002375 name: cricoid cartilage namespace: uberon alt_id: UBERON:FMA_9615-MA_0001762 def: "The cricoid cartilage, or simply cricoid (from the Greek krikoeides meaning 'ring-shaped'), is the only complete ring of cartilage around the trachea. [WP,unvetted]." [Wikipedia:Cricoid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cartilaginis cricoideae" RELATED PLURAL [Wikipedia:Cricoid_cartilage] synonym: "cartilago cricoidea" RELATED PLURAL [AAO:0000675] synonym: "cartilago cricotrachealis" RELATED [AAO:0000675] synonym: "cricoid" RELATED [Wikipedia:Cricoid_cartilage] synonym: "cricoidea" RELATED [Wikipedia:Cricoid_cartilage] synonym: "innominate cartilage" RELATED [VHOG:0001308] synonym: "krykoid cartilage" RELATED [Wikipedia:Cricoid_cartilage] xref: AAO:0000675 xref: EHDAA2:0000326 xref: EHDAA:9393 xref: EMAPA:18696 xref: FMA:9615 xref: GAID:110 xref: MA:0001762 xref: MESH:A.02.165.507.211 xref: SCTID:263484006 xref: VHOG:0001308 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/Gray1194.png/200px-Gray1194.png xref: ncithesaurus:Cricoid_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage is_a: UBERON:0001994 ! hyaline cartilage [Term] id: UBERON:0002376 name: muscle of head namespace: uberon alt_id: UBERON:FMA_9616-MA_0000578-ZFA_0000328 def: "Muscle organ which is a part of the head. Examples: masseter, orbicularis oculi.[FMA]" [FMA:9616] comment: TODO - check ZFA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "adult head muscle organ" EXACT [OBOL:automatic] synonym: "cephalic muscle" EXACT [ZFA:0001652] synonym: "cephalic musculature" EXACT [] synonym: "cranial muscle " RELATED [ZFA:0001652] synonym: "head muscle" EXACT [] synonym: "head muscle organ" EXACT [OBOL:automatic] synonym: "head muscles" RELATED [] synonym: "muscle organ of adult head" EXACT [OBOL:automatic] synonym: "muscle organ of head" EXACT [OBOL:automatic] synonym: "musculus caput" EXACT [] xref: AAO:0000107 xref: BTO:0000021 xref: EFO:0003524 xref: EHDAA2:0000322 xref: EMAPA:18171 xref: FMA:9616 xref: MA:0000578 xref: TAO:0000328 xref: ZFA:0000328 xref: ZFA:0001652 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0008229 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! craniocervical region musculature [Term] id: UBERON:0002377 name: muscle of neck namespace: uberon alt_id: UBERON:FMA_9617-MA_0000587 def: "Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle.[FMA]" [FMA:9617] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "muscle organ of neck" EXACT [OBOL:automatic] synonym: "muscle organ of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) muscle organ" EXACT [OBOL:automatic] synonym: "neck muscle" EXACT [] synonym: "neck muscle organ" EXACT [OBOL:automatic] xref: FMA:9617 xref: GAID:149 xref: MA:0000587 xref: MESH:A.02.633.567.650 xref: ncithesaurus:Neck_Muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0008229 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! craniocervical region musculature relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0002378 name: muscle of abdomen namespace: uberon alt_id: UBERON:FMA_9620-MA_0000520 def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "abdomen muscle" EXACT [] synonym: "abdomen muscle organ" EXACT [OBOL:automatic] synonym: "abdominal muscle" EXACT [] synonym: "abdominal wall muscle" EXACT [] synonym: "muscle organ of abdomen" EXACT [OBOL:automatic] xref: BTO:0001261 xref: FMA:9620 xref: GAID:89 xref: MA:0000520 xref: MESH:A.02.633.567.050 xref: OpenCyc:Mx4rvlygNJwpEbGdrcN5Y29ycA xref: SCTID:361352008 xref: ncithesaurus:Abdominal_Muscle is_a: UBERON:0003833 ! abdominal segment muscle is_a: UBERON:0005172 ! abdomen organ [Term] id: UBERON:0002379 name: perineal muscle namespace: uberon alt_id: UBERON:FMA_9623-MA_0000538 def: "A muscle organ that is part of a perineum [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "muscle of perineum" EXACT [] synonym: "muscle organ of perineal region" EXACT [OBOL:automatic] synonym: "muscle organ of perineum" EXACT [OBOL:automatic] synonym: "perineal region muscle organ" EXACT [OBOL:automatic] synonym: "perineum muscle organ" EXACT [OBOL:automatic] xref: EMAPA:18923 xref: FMA:9623 xref: MA:0000538 xref: ncithesaurus:Perineal_Muscle is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0002380 name: trapezius namespace: uberon alt_id: UBERON:FMA_9626-MA_0002398 def: "In human anatomy, the trapezius is a large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]." [Wikipedia:Trapezius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "trapezius muscle" EXACT [] xref: EMAPA:18183 xref: FMA:9626 xref: MA:0002398 xref: SCTID:181740005 xref: VHOG:0000834 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Trapezius.png/200px-Trapezius.png xref: ncithesaurus:Trapezius_Muscle is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0002381 name: pectoralis major namespace: uberon alt_id: UBERON:FMA_9627-MA_0002354 def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [Wikipedia:Pectoralis_major] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pectoralis major muscle" EXACT [] synonym: "pectoralis major muscle structure" EXACT [SCTID:60005003] xref: EHDAA2:0001424 xref: EHDAA:8311 xref: EMAPA:18179 xref: FMA:9627 xref: MA:0002354 xref: SCTID:60005003 xref: VHOG:0000895 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png xref: ncithesaurus:Pectoralis_Major is_a: UBERON:0001495 ! pectoral muscle [Term] id: UBERON:0002382 name: rectus abdominis namespace: uberon alt_id: UBERON:FMA_9628-MA_0002364 def: "The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the human abdomen (and in some other animals). There are two parallel muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (5b7) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, orbeven rarerbasymmetrically arranged segments. All these variations are functionally equivalent. [WP,unvetted]." [Wikipedia:Rectus_abdominis] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0001595 xref: EHDAA:8252 xref: EMAPA:18164 xref: FMA:9628 xref: GAID:142 xref: MA:0002364 xref: MESH:A.02.633.567.050.800 xref: VHOG:0000863 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/95/Rectus_abdominis.png/200px-Rectus_abdominis.png xref: ncithesaurus:Rectus_Abdominis is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0002383 name: supraspinatus namespace: uberon alt_id: UBERON:FMA_9629-MA_0002389 def: "The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]." [Wikipedia:Supraspinatus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0001967 xref: EHDAA:8319 xref: EMAPA:18182 xref: FMA:9629 xref: MA:0002389 xref: SCTID:181626001 xref: VHOG:0000848 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png xref: ncithesaurus:Supraspinatus is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0002384 name: connective tissue namespace: uberon alt_id: UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017 def: "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibres and ground substance." [VAO:0000017] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Bindegewebe" RELATED [BTO:0000421] synonym: "fascia" RELATED [] synonym: "portion of connective tissue" EXACT [FMA:9640] synonym: "textus connectivus" EXACT [] xref: AAO:0000098 xref: BTO:0000421 xref: EFO:0000952 xref: EV:0100150 xref: FMA:9640 xref: GAID:100 xref: MA:0000011 xref: MAT:0000301 xref: MESH:A.02.340 xref: MIAA:0000301 xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA xref: SCTID:361919005 xref: VAO:0000017 xref: XAO:0001017 xref: ZFA:0001632 xref: galen:ConnectiveTissue xref: ncithesaurus:Connective_Tissue is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0002385 name: muscle tissue namespace: uberon alt_id: UBERON:FMA_9641-MA_0002437 def: "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, Wikipedia:Muscle_tissue, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764] comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "muscle tissue" EXACT SENSU [] synonym: "portion of muscle tissue" EXACT [FMA:9641] synonym: "textus muscularis" EXACT [] xref: AAO:0000306 xref: AEO:0000122 xref: EHDAA2:0003122 xref: FMA:9641 xref: MA:0002437 xref: MESH:A.02.633 xref: SCTID:91727004 xref: galen:MuscleTissue xref: ncithesaurus:Muscle_Tissue is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000383 ! musculature of body relationship: part_of UBERON:0001015 ! musculature disjoint_from: UBERON:0003714 ! neural tissue property_value: "spatially_disjoint_from" UBERON:0003714 [Term] id: UBERON:0002386 name: forelimb zeugopod namespace: uberon alt_id: UBERON:FMA_9663-MA_0000034 def: "distal region of the upper limb, between the elbow and the wrist." [Wikipedia:Forearm] comment: Naming conventions for pod terms under discussion within phenoscape group subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "antebrachial region" EXACT [] synonym: "antebrachium" EXACT [Wikipedia:Forearm] synonym: "arm middle limb segment" EXACT [OBOL:automatic] synonym: "arm zeugopod" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "brachial region zeugopod" EXACT [OBOL:automatic] synonym: "forearm" EXACT [] synonym: "forelimb zeugopodium" EXACT [] synonym: "intermediate segment of free upper limb" EXACT [] synonym: "lower arm" EXACT [] synonym: "lower segment of arm" EXACT [] synonym: "middle limb segment of arm" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "regio antebrachialis" EXACT [FMA:9663, FMA:TA] synonym: "zeugopod of arm" EXACT [] synonym: "zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "zeugopod of forelimb" EXACT [] synonym: "zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: BTO:0001447 xref: EFO:0003053 xref: EHDAA2:0000553 xref: EHDAA:4172 xref: EHDAA:6218 xref: EMAPA:17417 xref: FMA:9663 xref: GAID:55 xref: MA:0000034 xref: MESH:A.01.378.800.585 xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA xref: SCTID:362741001 xref: VHOG:0000341 xref: galen:Forearm xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png xref: ncithesaurus:Forearm is_a: UBERON:0002471 ! zeugopod is_a: UBERON:0008785 ! upper limb segment relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0002387 name: foot namespace: uberon alt_id: UBERON:FMA_9664-MA_0000044 def: "The foot is an anatomical structure found in many vertebrates. It is the terminal portion of a limb which bears weight and allows locomotion. In many animals with feet, the foot is a separate organ at the terminal part of the leg made up of one or more segments or bones, generally including claws or nails. [WP,unvetted]." [Wikipedia:Foot] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "autopod of hind limb" EXACT [OBOL:automatic] synonym: "autopod of hindlimb" EXACT [OBOL:automatic] synonym: "autopod of inferior member" EXACT [OBOL:automatic] synonym: "autopod of lower extremity" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb autopod" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "hind paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] synonym: "hind-paw" NARROW SENSU [EMAPA:17428] synonym: "hindlimb autopod" EXACT [OBOL:automatic] synonym: "hindlimb autopodium" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "inferior member autopod" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "lower extremity autopod" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "pes" EXACT [UBERON:cjm] synonym: "terminal segment of free lower limb" EXACT [] xref: BTO:0000476 xref: EFO:0003065 xref: EHDAA2:0000546 xref: EMAPA:17459 xref: FMA:9664 xref: GAID:40 xref: MA:0000044 xref: MESH:A.01.378.610.250 xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA xref: SCTID:302545001 xref: VHOG:0000350 xref: galen:Foot xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Male_Right_Foot_1.jpg/200px-Male_Right_Foot_1.jpg xref: ncithesaurus:Foot is_a: UBERON:0002470 ! autopod is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0002388 name: ankle namespace: uberon alt_id: UBERON:FMA_9665-MA_0000043 def: "In human anatomy, the ankle joint is formed where the foot and the leg meet. The ankle, or talocrural joint, is a synovial hinge joint that connects the distal ends of the tibia and fibula in the lower limb with the proximal end of the talus bone in the foot. The articulation between the tibia and the talus bears more weight than between the smaller fibula and the talus. The term 'ankle' is used to describe structures in the region of the ankle joint proper. [WP,unvetted]." [Wikipedia:Ankle] comment: We follow MA in making this part of the hindlimb for now, but subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EFO:0001409 xref: FMA:9665 xref: GAID:41 xref: MA:0000043 xref: MESH:A.01.378.610.250.149 xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA xref: galen:Ankle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0002389 name: hand digit namespace: uberon alt_id: UBERON:0000028 alt_id: UBERON:FMA_9666-MA_0000041 def: "Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger [FMA]. A digit found on the hands of humans and other primates used for manipulation and sensation [Wikipedia]." [Wikipedia:Finger] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "digit of hand" EXACT [] synonym: "digitus manus" EXACT [] synonym: "finger" EXACT [FMA:9666] synonym: "fore digit" EXACT [AAO:0000857, XAO:0003036] synonym: "forelimb digit" EXACT [] xref: AAO:0000857 xref: BTO:0004669 xref: EHDAA2:0000404 xref: FMA:9666 xref: GAID:57 xref: MA:0000041 xref: MESH:A.01.378.800.667.430 xref: NIF_GrossAnatomy:nlx_anat_20090602 xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA xref: SCTID:283992002 xref: XAO:0003036 xref: galen:Finger xref: ncithesaurus:Finger is_a: UBERON:0002544 ! digit is_a: UBERON:0005451 ! segment of hand relationship: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0001440 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! forelimb skeleton [Term] id: UBERON:0002390 name: hematopoietic system namespace: uberon alt_id: UBERON:FMA_9667-MA_0002434-MIAA_0000022-XAO_0000122-ZFA_0005023 def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, OMD:haematological, Wikipedia:Hematopoietic_system, http://www.thefreedictionary.com/hematopoietic+system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Blutbildungssystem" RELATED [BTO:0000570] synonym: "haematological system" EXACT [] synonym: "haematopoietic system" RELATED [] synonym: "haemopoietic system" EXACT [] synonym: "hematological system" RELATED [] synonym: "hematolymphoid system" RELATED [] synonym: "hemopoietic system" RELATED [] synonym: "organa haemopoietica" EXACT [] xref: AAO:0011002 xref: BTO:0000570 xref: EFO:0000798 xref: EV:0100045 xref: FMA:9667 xref: GAID:1008 xref: MA:0002434 xref: MAT:0000022 xref: MESH:A.15.378 xref: MIAA:0000022 xref: SCTID:362587009 xref: TAO:0005023 xref: VHOG:0001624 xref: XAO:0000122 xref: ZFA:0005023 xref: ncithesaurus:Hematopoietic_System is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002193 ! hemolymphoid system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002391 name: lymph namespace: uberon alt_id: UBERON:FMA_9671-MA_0002520-MIAA_0000055 def: "Transudate contained in the lumen of lymphatic vessel[FMA]. Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system[WP]." [FMA:9671, Wikipedia:Lymph] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000855 xref: EFO:0000871 xref: ENVO:02000041 xref: EV:0100049 xref: FMA:9671 xref: GAID:1186 xref: MA:0002520 xref: MAT:0000055 xref: MESH:A.12.207.630 xref: MIAA:0000055 xref: OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA xref: galen:Lymph xref: ncithesaurus:Lymph is_a: UBERON:0000179 ! haemolymphatic fluid [Term] id: UBERON:0002392 name: nasolacrimal duct namespace: uberon alt_id: UBERON:FMA_9703-MA_0001299 def: "The nasolacrimal duct (sometimes called tear duct) carries tears from the lacrimal sac into the nasal cavity. Excess tears flow through nasolacrimal duct which opens in the nose. This is the reason the nose starts to run when a person is crying or has watery eyes from an allergy, and why one can sometimes taste eye drops. Like the lacrimal sac, the duct is lined by stratified columnar epithelium containing mucus-secreting goblet cells, and is surrounded by connective tissue. Obstruction of the nasolacrimal duct leads to the excess overflow of tears called epiphora. A congenital obstruction can cause cystic expansion of the duct and is called a dacrocystocele or Timo cyst. Persons with dry eye conditions can be fitted with punctal plugs that seal the ducts to limit the amount of fluid drainage and retain moisture. The canal containing the nasolacrimal duct is called the nasolacrimal canal. [WP,unvetted]." [Wikipedia:Nasolacrimal_duct] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000643 xref: EHDAA2:0001237 xref: EHDAA:7849 xref: EHDAA:9094 xref: EMAPA:17853 xref: FMA:9703 xref: GAID:902 xref: MA:0001299 xref: MESH:A.09.371.463.640 xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA xref: SCTID:280643009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png xref: ncithesaurus:Nasolacrimal_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0002393 name: pharyngotympanic tube namespace: uberon alt_id: UBERON:FMA_9705-MA_0000255-XAO_0000213 def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]" [FMA:FMA, Wikipedia:Pharyngotympanic_tube] comment: Editor notes: we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "auditory tube" EXACT [] synonym: "eustachian tube" RELATED [] synonym: "internal auditory tube" EXACT [] synonym: "tuba auditiva" EXACT [FMA:9705, FMA:TA] synonym: "tuba auditoria" EXACT [FMA:9705, FMA:TA] xref: AAO:0000146 xref: EMAPA:17601 xref: EV:0100359 xref: FMA:9705 xref: GAID:869 xref: MA:0000255 xref: VHOG:0001145 xref: XAO:0000213 xref: ncithesaurus:Eustachian_Tube is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0002394 name: bile duct namespace: uberon alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134 def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100] comment: The path is as follows: Bile canaliculi b Canals of Hering b interlobular bile ducts b intrahepatic bile ducts b left and right hepatic ducts merge to form b common hepatic duct exits liver and joins b cystic duct (from gall bladder) forming b common bile duct b joins with pancreatic duct b forming ampulla of Vater b enters duodenum [WP] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gall duct" RELATED [BTO:0000122] synonym: "hepatic duct" RELATED [] xref: AAO:0011019 xref: BTO:0000122 xref: EHDAA2:0000741 xref: EV:0100091 xref: FMA:9706 xref: GAID:280 xref: MA:0000354 xref: MESH:A.03.159.183 xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA xref: SCTID:276157007 xref: VHOG:0000212 xref: XAO:0000134 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png xref: ncithesaurus:Bile_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003928 ! digestive system duct is_a: UBERON:0005172 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! abdomen organ relationship: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0002294 ! biliary system [Term] id: UBERON:0002395 name: talus namespace: uberon alt_id: UBERON:FMA_9708-MA_0001351 def: "The talus bone or astragalus is a bone in the tarsus of the foot that forms the lower part of the ankle joint through its articulations with the lateral and medial malleoli of the two bones of the lower leg, the tibia and fibula. Within the tarsus, it articulates with the calcaneus below and navicular in front. Through these articulations, it transmits the entire weight of the body to the foot. The second largest of the tarsal bones, it is also one of the bones in the human body with the highest percentage of its surface area covered by articular cartilage. Additionally, it is also unique in that it has a retrograde blood supply, i.e. arterial blood enters the bone at the distal end." [Wikipedia:Talus_bone] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "astragaloid bone" RELATED [BTO:0002354] synonym: "astragalus" RELATED [MA:000135, Wikipedia:Talus_bone] synonym: "astragalus bone" RELATED [Wikipedia:Talus_bone] synonym: "os tarsi tibiale" RELATED [BTO:0002354] xref: BTO:0002354 xref: EMAPA:18503 xref: EMAPA:19135 xref: FMA:9708 xref: GAID:196 xref: MA:0001351 xref: MESH:A.02.835.232.300.710.780 xref: SCTID:182098005 xref: galen:Talus xref: ncithesaurus:Talus is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0002396 name: vomer namespace: uberon alt_id: UBERON:FMA_9710-MA_0001496 def: "The vomer is one of the unpaired facial bones of the skull. It is located in the midsagittal line, and articulates with the sphenoid, the ethmoid, the left and right palatine bones, and the left and right maxillary bones. [WP,unvetted]." [Wikipedia:Vomer] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "vomer bone" EXACT [] xref: AAO:0000633 xref: FMA:9710 xref: MA:0001496 xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA xref: SCTID:272678009 xref: ZFA:0000308 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg xref: ncithesaurus:Vomer is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0008907 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermal bone relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0003112 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory region relationship: part_of UBERON:0003113 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermatocranium [Term] id: UBERON:0002397 name: maxilla namespace: uberon alt_id: UBERON:FMA_9711-MA_0001491-ZFA_0000270 def: "Paired, intramembranous bone located on the lateral sides of the skull, posterior to the premaxillae[AAO]. The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. . Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [Wikipedia:Maxilla, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "maxillae" RELATED [] synonym: "upper jaw bone" EXACT [] xref: AAO:0000285 xref: EHDAA2:0001068 xref: EHDAA:8043 xref: EMAPA:17639 xref: EMAPA:17928 xref: FMA:9711 xref: GAID:220 xref: MA:0001491 xref: MESH:A.02.835.232.781.324.502.645 xref: SCTID:181813003 xref: TAO:0000270 xref: VHOG:0001021 xref: ZFA:0000270 xref: galen:Maxilla xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png xref: ncithesaurus:Maxilla is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0008193 ! pneumatized bone is_a: UBERON:0008907 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermal bone relationship: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0003113 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dermatocranium [Term] id: UBERON:0002398 name: hand namespace: uberon alt_id: UBERON:FMA_9712-MA_0000037 def: "The hands are the two intricate, prehensile, multi-fingered body parts normally located at the end of each arm of a primate. They are the chief organs for physically manipulating the environment, used for both gross motor skills (such as grasping a large object) and fine motor skills (such as picking up a small pebble). The fingertips contain some of the densest areas of nerve endings on the body, are the richest source of tactile feedback, and have the greatest positioning capability of the body; thus the sense of touch is intimately associated with hands. Like other paired organs (eyes, ears, legs), each hand is dominantly controlled by the opposing brain hemisphere, and thus handedness, or preferred hand choice for single-handed activities such as writing with a pen, reflects a significant individual trait. Some evolutionary anatomists use hand to refer more generally to the appendage of digits on the forelimb, for example, in the context of whether the three digits of the bird hand involved the same homologous loss of two digits as in the dinosaur hand. [WP,unvetted]." [Wikipedia:Hand] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arm autopod" EXACT [OBOL:automatic] synonym: "arm distal free limb segment" EXACT [OBOL:automatic] synonym: "autopod of arm" EXACT [OBOL:automatic] synonym: "autopod of brachial region" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region autopod" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "fore paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] synonym: "fore-paw" NARROW SENSU [EMAPA:17428] synonym: "forelimb autopod" EXACT [OBOL:automatic] synonym: "forelimb autopodium" EXACT [OBOL:automatic] synonym: "manus" EXACT [UBERON:cjm] synonym: "proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb" EXACT [] xref: AAO:0010803 xref: BTO:0004668 xref: EHDAA2:0000728 xref: EMAPA:17428 xref: FMA:9712 xref: GAID:56 xref: MA:0000037 xref: MESH:A.01.378.800.667 xref: NIF_GrossAnatomy:nlx_anat_20090603 xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA xref: SCTID:302539009 xref: VHOG:0000344 xref: galen:Hand xref: ncithesaurus:Hand is_a: UBERON:0002470 ! autopod is_a: UBERON:0008785 ! upper limb segment [Term] id: UBERON:0002399 name: lesser omentum namespace: uberon alt_id: UBERON:FMA_9715-MA_0001623 def: "The lesser omentum (small omentum; gastrohepatic omentum) is the double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]." [Wikipedia:Lesser_omentum] comment: editor note: exact part of and develops from relationships need to be established subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EHDAA2:0000991 xref: EHDAA:4858 xref: EMAPA:17890 xref: EMAPA:18909 xref: EV:0100086 xref: FMA:9715 xref: MA:0001623 xref: SCTID:362712005 xref: VHOG:0000357 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray984.png/200px-Gray984.png xref: ncithesaurus:Lesser_Omentum is_a: UBERON:0003688 ! omentum is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0001178 ! visceral peritoneum relationship: part_of UBERON:0005626 ! ventral mesogastrium [Term] id: UBERON:0002400 name: parietal pleura namespace: uberon alt_id: UBERON:FMA_9733-MA_0002488 def: "Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm.[FMA]" [FMA:FMA, Wikipedia:Parietal_pleura] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:9733 xref: MA:0002488 xref: OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA xref: SCTID:361998003 xref: VHOG:0001495 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: ncithesaurus:Parietal_Pleura is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000977 ! pleura relationship: part_of UBERON:0000977 ! pleura [Term] id: UBERON:0002401 name: visceral pleura namespace: uberon alt_id: UBERON:FMA_9734-MA_0002489 def: "Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung.[FMA]" [FMA:FMA, Wikipedia:Visceral_pleura] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pleura pulmonalis" EXACT [FMA:9734, FMA:TA] synonym: "pleura visceralis (pulmonalis)" EXACT [] synonym: "pulmonary pleura" EXACT [] xref: FMA:9734 xref: MA:0002489 xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA xref: SCTID:361997008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: ncithesaurus:Visceral_Pleura is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000977 ! pleura relationship: part_of UBERON:0000977 ! pleura [Term] id: UBERON:0002402 name: pleural cavity namespace: uberon alt_id: UBERON:FMA_9740-MA_0000055 def: "Cavity of serous sac surropunded by the pleura.[FMA]" [FMA:FMA, Wikipedia:Pleural_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004422 xref: EHDAA2:0001475 xref: EMAPA:18462 xref: FMA:9740 xref: GAID:95 xref: MA:0000055 xref: MESH:A.01.911.800.650 xref: OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA xref: SCTID:361999006 xref: VHOG:0000581 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png xref: ncithesaurus:Pleural_Cavity is_a: UBERON:0002323 ! body cavity relationship: part_of UBERON:0009778 ! pleural sac [Term] id: UBERON:0002403 name: internal intercostal muscle namespace: uberon alt_id: UBERON:FMA_9757-MA_0002326 def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Internal_intercostal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intercostal muscle internal layer" RELATED [] synonym: "intercostales internus" EXACT [] xref: EHDAA2:0000875 xref: FMA:9757 xref: MA:0002326 xref: OpenCyc:Mx4rvlj6HZwpEbGdrcN5Y29ycA xref: SCTID:244890001 xref: VHOG:0000905 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png xref: ncithesaurus:Internal_Intercostal_Muscle is_a: UBERON:0001111 ! intercostal muscle [Term] id: UBERON:0002404 name: transversus thoracis namespace: uberon alt_id: UBERON:FMA_9760-MA_0002397 def: "The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]." [Wikipedia:Transversus_thoracis] comment: This class was created automatically from a combination of ontologies subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:19267 xref: FMA:9760 xref: MA:0002397 xref: SCTID:244933000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Transversus_thoracis.png/200px-Transversus_thoracis.png xref: ncithesaurus:Transversus_Thoracis is_a: UBERON:0002426 ! chest muscle [Term] id: UBERON:0002405 name: immune system namespace: uberon alt_id: UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159 def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0011003 xref: BILA:0000104 xref: FMA:9825 xref: GAID:328 xref: MA:0002711 xref: MESH:A.15.382 xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA xref: SCTID:362590003 xref: TAO:0001159 xref: VHOG:0001247 xref: XAO:0003152 xref: ZFA:0001159 xref: ncithesaurus:Immune_System is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002406 name: pericardial sac namespace: uberon alt_id: UBERON:FMA_9868-ZFA_0000054 def: "Serous sac, which has as parts the serous pericardium and the pericardial cavity [FMA]." [FMA:9868, Wikipedia:Pericardial_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pericardium" RELATED [] xref: FMA:9868 xref: RETIRED_EHDAA2:0001443 xref: SCTID:361326002 xref: TAO:0000054 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005906 ! serous sac relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0002407 name: pericardium namespace: uberon alt_id: UBERON:FMA_9869-MA_0000099 def: "The outer membrane/wall of the developing heart, surrounding the myocardium. Peritoneum that surrounds the heart.[AAO]" [AAO:0010817, Wikipedia:Pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010817 xref: BTO:0000717 xref: EFO:0000820 xref: EHDAA:5376 xref: EMAPA:17174 xref: EV:0100023 xref: FMA:9869 xref: GAID:569 xref: MA:0000099 xref: MAT:0000454 xref: MESH:A.07.541.795 xref: OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001443 xref: SCTID:181295003 xref: VHOG:0001280 xref: XAO:0004182 xref: ZFA:0000054 xref: galen:Pericardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png xref: ncithesaurus:Pericardium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004457 ! cavity lining is_a: UBERON:0005983 ! heart layer is_a: UBERON:0000042 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! serous membrane is_a: UBERON:0002358 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! peritoneum relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0001074 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pericardial cavity relationship: part_of UBERON:0002100 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! trunk [Term] id: UBERON:0002408 name: parietal serous pericardium namespace: uberon alt_id: UBERON:FMA_9870-MA_0000483 def: "Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm.[FMA]" [FMA:FMA, Wikipedia:Parietal_pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lamina parietalis (pericardii serosum)" EXACT [] synonym: "lamina parietalis pericardii" EXACT [FMA:9870, FMA:TA] synonym: "parietal layer of serous pericardium" EXACT [] synonym: "parietal pericardium" EXACT [] xref: EHDAA:3422 xref: EHDAA:5378 xref: EMAPA:17175 xref: EMAPA:19031 xref: FMA:9870 xref: MA:0000483 xref: SCTID:243956000 xref: VHOG:0000537 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005983 ! heart layer relationship: part_of UBERON:0002357 ! serous pericardium [Term] id: UBERON:0002409 name: pericardial fluid namespace: uberon alt_id: UBERON:FMA_9887-MA_0002530 def: "Transudate contained in the pericardial cavity.[FMA]" [FMA:9887, Wikipedia:Pericardial_fluid] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001016 xref: FMA:9887 xref: MA:0002530 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002410 name: autonomic nervous system namespace: uberon alt_id: UBERON:FMA_9905-MA_0000219-ZFA_0001574 def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [Wikipedia:Autonomic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ANS" RELATED [] synonym: "visceral nervous system" EXACT [] xref: AAO:0000033 xref: BTO:0002507 xref: EHDA:10095 xref: EHDAA:3767 xref: EMAPA:16984 xref: FMA:9905 xref: GAID:706 xref: MA:0000219 xref: MESH:A.08.800.050 xref: NIF_GrossAnatomy:birnlex_1123 xref: SCTID:362481007 xref: TAO:0001574 xref: VHOG:0000396 xref: ZFA:0001574 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: ncithesaurus:Autonomic_Nervous_System is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002411 name: clitoris namespace: uberon alt_id: UBERON:FMA_9909-MA_0000382 def: "The clitoris is a sexual organ that is present only in female mammals. In humans, the visible button-like portion is located near the anterior junction of the labia minora, above the opening of the urethra and vagina. Unlike the penis, which is homologous to the clitoris, the clitoris does not contain the distal portion of the urethra. The only known exception to this is in the Spotted Hyena. In this species, the urogenital system is unique in that the female urinates, mates and gives birth via an enlarged, erectile clitoris, known as a pseudo-penis. In humans, the clitoris is the most sensitive erogenous zone of a woman, the stimulation of which may produce sexual excitement and clitoral erection; its continuing stimulation may produce sexual pleasure in the woman and orgasm. [WP,unvetted]." [Wikipedia:Clitoris] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0002020 xref: EHDAA2:0000255 xref: EHDAA:9360 xref: EMAPA:30819 xref: FMA:9909 xref: GAID:385 xref: MA:0000382 xref: MESH:A.05.360.319.887.436 xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA xref: SCTID:181442003 xref: VHOG:0000700 xref: galen:Clitoris xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Clitoris_anatomy_labeled-en.svg/200px-Clitoris_anatomy_labeled-en.svg.png xref: ncithesaurus:Clitoris is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000997 ! mammalian vulva [Term] id: UBERON:0002412 name: vertebra namespace: uberon alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189 def: "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0000691 xref: EFO:0001371 xref: FMA:9914 xref: MA:0000309 xref: OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA xref: SCTID:181817002 xref: TAO:0001189 xref: VHOG:0001143 xref: XAO:0004019 xref: ZFA:0001189 xref: galen:Vertebra xref: ncithesaurus:Vertebra is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0002413 name: cervical vertebra namespace: uberon alt_id: UBERON:FMA_9915-MA_0000311-XAO_0003076 def: "A vertebra immediately inferior to the skull[WP]." [Wikipedia:Cervical_vertebra] comment: In some species, some parts of the skull may be composed of vertebra-like elements, e.g. the occipital bone in humans is composed of four vertebra-like segments. In many vertebrate species, cervical vertebrae are variable in number; however, almost all mammals have seven (including those with very short necks relative to body size, such as elephants or whales, and those with very long necks, such as giraffes). The few exceptions include the manatee and the sloths, of which the two-toed sloth has six cervical vertebrae and the three-toed sloth has up to nine cervical vertebrae. In many species, though not in mammals, the cervical vertebrae bear ribs. In many other groups, such as lizards and saurischian dinosaurs, the cervical ribs are large; in birds they are small and completely fused to the vertebrae. The transverse processes of mammals are homologous to the cervical ribs of other amniotes. Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. n humans, cervical vertebrae are the smallest of the true vertebrae, and can be readily distinguished from those of the thoracic or lumbar regions by the presence of a foramen (hole) in each transverse process, through which passes the vertebral artery. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cervical vertebrae" EXACT PLURAL [] xref: EMAPA:17674 xref: FMA:9915 xref: GAID:235 xref: MA:0000311 xref: MESH:A.02.835.232.834.151 xref: SCTID:181820005 xref: XAO:0003076 xref: galen:CervicalVertebra xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Illu_vertebral_column.jpg/200px-Illu_vertebral_column.jpg xref: ncithesaurus:Cervical_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003458 ! neck bone is_a: UBERON:0004451 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! presacral vertebra relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0002414 name: lumbar vertebra namespace: uberon alt_id: UBERON:FMA_9921-MA_0000312 def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebra] comment: Whereas all rats had six lumbar vertebrae, variable patterns in mice included mostly five vertebrae in DBA/2J, mostly six vertebrae in C57BL/6J, and a mix in B6129PF2/J - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/ subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: EMAPA:18007 xref: FMA:9921 xref: GAID:240 xref: MA:0000312 xref: MESH:A.02.835.232.834.519 xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA xref: SCTID:181822002 xref: galen:LumbarVertebra xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c8/Gray93.png/200px-Gray93.png xref: ncithesaurus:Lumbar_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004451 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! presacral vertebra [Term] id: UBERON:0002415 name: tail namespace: uberon alt_id: UBERON:MA_0000008-MIAA_0000094-WBbt_0005741-XAO_0003026-ZFA_0001117 def: "section at the rear end of an animal's body; in general, the term refers to a distinct, flexible appendage to the torso[WP]." [ISBN:0471209627, OMD:tail, Wikipedia:Tail, ZFIN:curator] comment: Editor notes: Note we also have a subclass post-anal tail, for the chordate specific structure. currently defined very generally, inclusive of caudal fin subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "caudal subdivision" EXACT [UBERON:cjm] xref: AEO:0000109 xref: BILA:0000117 xref: BTO:0001348 xref: EFO:0000963 xref: EHDAA:9198 xref: GAID:1245 xref: MAT:0000094 xref: MESH:A.13.895 xref: MIAA:0000094 xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA xref: WBbt:0005741 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0002416 name: integumental system namespace: uberon alt_id: UBERON:MA_0000014-FMA_72979 def: "organ system that protects the body from damage, comprising the skin and its appendages (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]." [Wikipedia:Integumentary_system] comment: in FMA, integumentary system = integument + certain glands. Note that here we use integumental system in a general sense subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "integumentary system" EXACT [FMA:72979] xref: EFO:0000807 xref: EHDAA2:0000836 xref: EHDAA:6520 xref: EMAPA:17524 xref: EV:0100151 xref: FBbt:00004969 xref: FMA:72979 xref: HAO:0000421 xref: MA:0000014 xref: MAT:0000033 xref: MESH:A.17 xref: SCTID:361692004 xref: TADS:0000108 xref: VHOG:0000403 xref: XAO:0000176 xref: ncithesaurus:Integumentary_System is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002417 name: abdominal segment of trunk namespace: uberon alt_id: UBERON:MA_0000021-FMA_259211 def: "the abdominal segment of the torso." [Wikipedia:Lumbar] synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021] synonym: "lower body" RELATED [MA:0000021] synonym: "lumbar region" RELATED [UBERON:cjm] xref: FMA:259211 xref: MA:0000021 is_a: UBERON:0009569 ! subdivision of trunk [Term] id: UBERON:0002418 name: cartilage tissue namespace: uberon alt_id: UBERON:MA_0000104-MIAA_0000189-XAO_0000170 def: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." [FMA:37377, GO:0051216, Wikipedia:Cartilage, http://sourceforge.net/tracker/?func=detail&atid=2257941&aid=3396584&group_id=76834] comment: see also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cartilage tissue" EXACT [FMA:37377] synonym: "cartilaginous tissue" EXACT [] xref: AAO:0000060 xref: AEO:0000087 xref: BTO:0000206 xref: EFO:0000949 xref: EHDAA2:0003087 xref: EV:0100141 xref: FMA:37377 xref: GAID:99 xref: MA:0000104 xref: MAT:0000189 xref: MESH:A.02.165 xref: MIAA:0000189 xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA xref: SCTID:309312004 xref: TAO:0001501 xref: VAO:0000040 xref: VHOG:0001207 xref: XAO:0000170 xref: ZFA:0001501 xref: galen:Cartilage xref: ncithesaurus:Cartilage is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004755 ! skeletal tissue relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0002419 name: skin gland namespace: uberon alt_id: UBERON:MA_0000146-FMA_71878 def: "A gland that is part of a skin of body [Obol]." [OBOL:automatic] comment: check FMA, use plural for now as general class not there subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "glandulae cutis" EXACT [FMA:71878, FMA:TA] synonym: "skin glands" RELATED PLURAL [] synonym: "skin glands set" RELATED PLURAL [] xref: FMA:71878 xref: MA:0000146 is_a: UBERON:0003297 ! gland of integumental system relationship: part_of UBERON:0000014 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! zone of skin [Term] id: UBERON:0002420 name: basal ganglion namespace: uberon def: "one of a group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]." [Wikipedia:Basal_ganglia] comment: Editor note: it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the set of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "basal ganglia" RELATED PLURAL [] synonym: "basal ganglion of telencephalon" EXACT [] synonym: "basal nucleus" RELATED [MA:0000184] xref: BTO:0000235 xref: EFO:0000904 xref: FMA:62514 xref: SCTID:244434001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Basal_Ganglia_and_Related_Structures.svg/200px-Basal_Ganglia_and_Related_Structures.svg.png is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0010011 ! collection of basal ganglia [Term] id: UBERON:0002421 name: hippocampal formation namespace: uberon alt_id: UBERON:MA_0000189-FMA_74038 def: "Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]." [UBERON:cjm] comment: The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum[NIF]. BTO:0000601 is placed here since it includes the DG. GO also includes dentate gyrus development as part of hippocampus development, so we assume when GO says \"hippocampus\" it means \"hippocampal formation\". In ABA HPF = (.. subiculum) + HIP, HIP = DG + AH. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "archipallium" RELATED [MA:0000189] synonym: "hippocampus" NARROW [BTO:0000601, GO:0021766] synonym: "hippocampus (crosby)" EXACT [] synonym: "major hippocampus" RELATED [BTO:0000601] synonym: "primal cortex" RELATED [MA:0000189] xref: ABA:HPF xref: BM:Tel-HF xref: BTO:0000601 xref: FMA:74038 xref: MA:0000189 xref: NIF_GrossAnatomy:birnlex_715 xref: SCTID:422867004 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000203 ! pallium relationship: part_of UBERON:0001893 ! telencephalon property_value: "spatially_disjoint_from" UBERON:0001950 property_value: "spatially_disjoint_from" UBERON:0002264 [Term] id: UBERON:0002422 name: fourth ventricle namespace: uberon alt_id: UBERON:MA_0000196-FMA_78469 def: "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO]." [Wikipedia:Fourth_ventricle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "4th ventricle" RELATED [MA:0000196] synonym: "rhombencephalic vesicle" EXACT [ZFA:0000110] synonym: "ventricle IV" EXACT [ZFA:0000110] synonym: "ventricle of hindbrain" RELATED [BTO:0003426] synonym: "ventricle of rhombencephalon" RELATED [BTO:0003426] synonym: "ventriculus quartus" RELATED [BTO:0003426] xref: AAO:0011043 xref: BM:Pons-4V xref: BTO:0003426 xref: EHDAA2:0000100 xref: EHDAA:896 xref: EMAPA:16479 xref: EMAPA:16917 xref: EV:0100310 xref: FMA:78469 xref: GAID:610 xref: MA:0000196 xref: MESH:A.08.186.211.276.500 xref: NIF_GrossAnatomy:birnlex_1256 xref: OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA xref: SCTID:180932000 xref: VHOG:0000006 xref: XAO:0003099 xref: ZFA:0000110 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png xref: ncithesaurus:Fourth_Ventricle_of_the_Brain is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0002423 name: hepatobiliary system namespace: uberon alt_id: UBERON:MA_0000324-MIAA_0000024-XAO_0000132-ZFA_0000036 def: "The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct" [GO:0061008, Wikipedia:Hepatobiliary_system] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "hepaticobiliary system" EXACT [GO:0061008] synonym: "liver and biliary system" EXACT [] synonym: "liver/biliary system" RELATED [] xref: AAO:0011056 xref: EFO:0000800 xref: EHDAA2:0000998 xref: EHDAA:2189 xref: EMAPA:16840 xref: EV:0100088 xref: MA:0000324 xref: MAT:0000024 xref: MIAA:0000024 xref: TAO:0000036 xref: VHOG:0000294 xref: XAO:0000132 xref: ZFA:0000036 xref: ncithesaurus:Hepatobiliary_System is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001007 ! digestive system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002424 name: oral epithelium namespace: uberon alt_id: UBERON:MA_0000344-ZFA_0000816 def: "The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds." [ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24] comment: Editor note: consider including separate class for developmental structure. Development notes: the avian oral epithelium has the developmental capacity to initiate tooth developmental programs with underlying grafts of non-avian oral ectomesenchyme [PMID:16488870] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010357 xref: BTO:0001775 xref: EHDAA2:0001325 xref: EHDAA:2187 xref: EMAPA:16839 xref: EMAPA:26942 xref: MA:0000344 xref: VHOG:0000187 xref: XAO:0003201 xref: ZFA:0000816 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004807 ! respiratory system epithelium is_a: UBERON:0004808 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system epithelium relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0003729 ! mouth mucosa [Term] id: UBERON:0002425 name: visceral serous pericardium namespace: uberon alt_id: UBERON:MA_0000484-FMA_84882 def: "Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]." [Wikipedia:Visceral_pericardium] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "epicardium" RELATED [MA:0000484] synonym: "visceral lamina of serous pericardium" EXACT [] synonym: "visceral layer of serous pericardium" EXACT [] synonym: "visceral pericardium" EXACT [] xref: AAO:0010409 xref: EHDAA2:0002202 xref: EMAPA:17176 xref: EMAPA:19032 xref: FMA:84882 xref: MA:0000484 xref: SCTID:243955001 xref: VHOG:0000538 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png is_a: UBERON:0002357 ! serous pericardium [Term] id: UBERON:0002426 name: chest muscle namespace: uberon alt_id: UBERON:MA_0000548-FMA_9619 def: "A muscle organ that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region muscle organ" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax muscle organ" EXACT [OBOL:automatic] synonym: "chest muscle organ" EXACT [OBOL:automatic] synonym: "front of thorax muscle organ" EXACT [OBOL:automatic] synonym: "muscle of thorax" EXACT [FMA:9619] synonym: "muscle organ of anterior thoracic region" EXACT [OBOL:automatic] synonym: "muscle organ of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "muscle organ of chest" EXACT [OBOL:automatic] synonym: "muscle organ of front of thorax" EXACT [OBOL:automatic] synonym: "musculus thoracicus" EXACT [] synonym: "thoracic muscle" EXACT [] xref: BTO:0000508 xref: FMA:9619 xref: MA:0000548 is_a: UBERON:0001774 ! muscle of trunk is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0005175 ! chest organ relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0002427 name: arm skin namespace: uberon alt_id: UBERON:MA_0000596-FMA_37721 def: "A zone of skin that is part of an arm [Obol]." [OBOL:automatic] synonym: "brachial region skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "skin of arm" EXACT [OBOL:automatic] synonym: "skin of brachial region" EXACT [OBOL:automatic] synonym: "skin of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: EMAPA:18062 xref: FMA:37721 xref: MA:0000596 xref: ncithesaurus:Arm_Skin is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0003531 ! forelimb skin relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0002428 name: limb bone namespace: uberon alt_id: UBERON:MA_0000688-MIAA_0000151 def: "A bone that is part of a limb [Obol]." [OBOL:automatic] comment: Note that the formal definition is very inclusive, and includes sesamoids synonym: "bone of limb" EXACT [OBOL:automatic] synonym: "bone organ of limb" EXACT [OBOL:automatic] synonym: "limb bone organ" EXACT [OBOL:automatic] synonym: "limb skeleton" RELATED [] xref: EFO:0000880 xref: EFO:0000945 xref: EHDAA2:0002221 xref: MA:0000688 xref: MAT:0000151 xref: MIAA:0000151 is_a: UBERON:0001474 ! bone is_a: UBERON:0004375 ! bone of appendage relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002429 name: cervical lymph node namespace: uberon alt_id: UBERON:MA_0000736-FMA_61213 def: "Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]." [Wikipedia:Cervical_lymph_node] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lymph node of neck" EXACT [] xref: FMA:61213 xref: MA:0000736 xref: SCTID:181757009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Lymph_node_regions.jpg/200px-Lymph_node_regions.jpg xref: ncithesaurus:Cervical_Lymph_Node is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002430 name: lateral hypothalamic area namespace: uberon alt_id: UBERON:MA_0000834-FMA_62030 def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [Wikipedia:Lateral_hypothalamic_area] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "area hypothalamica lateralis" EXACT [FMA:62030, FMA:TA] synonym: "lateral division of hypothalamus" EXACT [] synonym: "lateral group of hypothalamic nuclei" EXACT [] synonym: "lateral hypothalamic group" EXACT [] synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834] synonym: "lateral hypothalamic region" EXACT [FMA:62030] synonym: "lateral hypothalamic zone (crosby)" EXACT [] xref: ABA:LHA xref: BM:Die-Hy-HLA xref: FMA:62030 xref: GAID:640 xref: MA:0000834 xref: MESH:A.08.186.211.730.385.357.300 xref: NIF_GrossAnatomy:birnlex_4037 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus property_value: "spatially_disjoint_from" UBERON:0001906 property_value: "spatially_disjoint_from" UBERON:0001907 property_value: "spatially_disjoint_from" UBERON:0001931 property_value: "spatially_disjoint_from" UBERON:0001933 [Term] id: UBERON:0002431 name: pars anterior namespace: uberon alt_id: UBERON:MA_0000854-ZFA_0001195 is_obsolete: true consider: UBERON:0006965 ! vascular cord [Term] id: UBERON:0002432 name: pars intermedia of adenohypophysis namespace: uberon alt_id: UBERON:MA_0000855-ZFA_0001197 def: "boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells." [Wikipedia:Pars_intermedia] comment: The intermediate part of adenohypophysis: an ill-defined region between the two lobes of the hypophysis; some systems of nomenclature consider it part of the neurohypophysis. In humans a defined structure develops during embryogenesis, but only scattered cells are retained when the gland matures[BTO]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "intermediate lobe" RELATED [BTO:0001788] synonym: "intermediate lobe of adenohypophysis" EXACT [] synonym: "intermediate lobe of pituitary" EXACT [] synonym: "pars intermedia" EXACT [MA:0000855] synonym: "pars intermedia (glandula pituitaria)" EXACT [FMA:74632, FMA:TA] synonym: "pars intermedia adenohypophyseos" RELATED [BTO:0001788] synonym: "pars intermedia adenohypophysis" EXACT [FMA:74632, FMA:TA] synonym: "pars intermedia lobi anterior hypophyseos" RELATED [BTO:0001788] xref: BTO:0001788 xref: EHDAA2:0001417 xref: EHDAA:8765 xref: EMAPA:17516 xref: FMA:74632 xref: MA:0000855 xref: VHOG:0001178 xref: ZFA:0001197 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0002433 name: pars tuberalis of adenohypophysis namespace: uberon alt_id: UBERON:MA_0000856-ZFA_0001196 def: "The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]." [Wikipedia:Pars_tuberalis] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pars tuberalis" EXACT [MA:0000856] synonym: "pars tuberalis (glandula pituitaria)" EXACT [FMA:74631, FMA:TA] synonym: "pars tuberalis adenohypophysis" EXACT [FMA:74631, FMA:TA] xref: BTO:0001739 xref: EHDAA2:0001419 xref: EHDAA:8767 xref: EMAPA:17517 xref: FMA:74631 xref: MA:0000856 xref: VHOG:0001114 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002196 ! adenohypophysis property_value: "homologous_to" ZFA:0005581 [Term] id: UBERON:0002434 name: pituitary stalk namespace: uberon alt_id: UBERON:0003014 alt_id: UBERON:MA_0000858-ZFA_0001199 alt_id: UBERON:NIF_GrossAnatomy_birnlex_912-FMA_74635 def: "The pituitary stalk (also known as the infundibular stalk or simply the infundibulum) is the connection between the hypothalamus and the posterior pituitary. It carries axons from the magnocellular neurosecretory cells of the hypothalamus down to the posterior pituitary where they release their hormones into the blood. This connection is called the hypothalamohypophyseal tract, and is responsible for the release of oxytocin and antidiuretic hormone[WP]." [Wikipedia:Pituitary_stalk] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "hypophyseal stalk" EXACT [MP:0009463] synonym: "hypophysial stalk" RELATED [ZFA:0001199] synonym: "infundibular stem" BROAD [MP:0009463] synonym: "infundibular stem of neurohypophysis" EXACT [FMA:74635] synonym: "infundibulum" EXACT [MA:0000858, ZFA:0001199] synonym: "infundibulum (lobus posterior) (glandula pituitaria)" EXACT [FMA:74635, FMA:TA] synonym: "infundibulum hypophysis" EXACT [FMA:74635, FMA:TA] synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199] synonym: "infundibulum of neurohypophysis" EXACT [FMA:74635] synonym: "infundibulum of pituitary gland" EXACT [FMA:74635] synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635] synonym: "neurohypophysis infundibulum" EXACT [FMA:74635] synonym: "tuberal part of hypophysis" EXACT [FMA:74635] xref: BTO:0000768 xref: EHDAA2:0000828 xref: EHDAA:7538 xref: EMAPA:17520 xref: FMA:74635 xref: MA:0000858 xref: NIF_GrossAnatomy:birnlex_912 xref: SCTID:245529009 xref: VHOG:0000245 xref: XAO:0004210 xref: ZFA:0001199 xref: ncithesaurus:Pituitary_Stalk is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0002198 ! neurohypophysis disjoint_from: UBERON:0005968 ! infundibulum of hair follicle [Term] id: UBERON:0002435 name: striatum namespace: uberon alt_id: UBERON:MA_0000891-FMA_77618 def: "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum] comment: AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "corpus striatum" RELATED [MA:0000891] synonym: "neostriatum" EXACT [GO:0021756, Wikipedia:Striatum] synonym: "striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum] xref: ABA:STR xref: BM:N xref: BTO:0000418 xref: EFO:0000109 xref: EMAPA:17549 xref: FMA:77618 xref: FMA:83683 xref: MA:0000891 xref: MESH:A.08.186.211.730.885.105.487.550 xref: NIF_GrossAnatomy:birnlex_1672 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png xref: ncithesaurus:Striatum is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0000204 ! ventral telencephalon relationship: part_of UBERON:0000369 ! corpus striatum relationship: part_of UBERON:0002420 ! basal ganglion property_value: "spatially_disjoint_from" UBERON:0006514 [Term] id: UBERON:0002436 name: primary visual cortex namespace: uberon alt_id: UBERON:MA_0000914-FMA_236871 def: "The term area 17 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]." [BrainInfo:2102, Wikipedia:Visual_cortex] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "BA17" RELATED [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" EXACT [Wikipedia:Visual_cortex] synonym: "V1" RELATED [] synonym: "area 17 of brodmann" RELATED [Wikipedia:Visual_cortex] synonym: "area 17 of brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "area striata" RELATED [] synonym: "b09-17" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "brodmann (1909) area 17" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "brodmann area 17" RELATED [Wikipedia:Visual_cortex] synonym: "brodmann area 17, striate" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "calcarine cortex" RELATED [BrainInfo:2102] synonym: "occipital visual neocortex" RELATED [GEO:GSM336648] synonym: "striate cortex" EXACT [FMA:236871] synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: BM:Tel-Cx-V1 xref: BTO:0004703 xref: FMA:236871 xref: MA:0000914 xref: NIF_GrossAnatomy:birnlex_1748 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002437 name: cerebral white matter namespace: uberon alt_id: UBERON:MA_0000945-FMA_241998 def: "White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711] xref: BTO:0000236 xref: FMA:241998 xref: MA:0000945 xref: NIF_GrossAnatomy:birnlex_711 xref: SCTID:361691006 xref: ncithesaurus:Cerebral_White_Matter is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002438 name: ventral tegmental nucleus namespace: uberon alt_id: UBERON:MA_0001031-FMA_72435 comment: AO notes: ventral and anterior tegmental nucleus are synonyms in FMA, but we split these into seperate classes. This is consistent with MA, ABA and neuronames, which treat these as distinct (NN suggest the anterior is a rodent specific structure). Location notes: this is part of pons and brainstem in MA, but this leads to an inconsistency with ABA. We err on the side of safety, and exclude the relationship to the pons here. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior tegmental nuclei" RELATED INCONSISTENT [FMA:72435] synonym: "anterior tegmental nucleus" RELATED INCONSISTENT [FMA:72435, http://www.medilexicon.com/medicaldictionary.php?t=61761] synonym: "deep tegmental nucleus of Gudden" EXACT [FMA:72435] synonym: "nucleus of Gudden" RELATED [MA:0001031] synonym: "nucleus tegmentales anteriores" RELATED [FMA:TA] synonym: "nucleus tegmentalis anterior" RELATED [FMA:TA] synonym: "ventral raphe tegmental nucleus" EXACT [FMA:72435] synonym: "ventral tegmental nuclei" EXACT [FMA:72435] synonym: "ventral tegmental nucleus (gudden)" EXACT [FMA:72435] synonym: "ventral tegmental nucleus of gudden" EXACT [FMA:72435] xref: ABA:VTN xref: FMA:72435 xref: MA:0001031 xref: NIF_GrossAnatomy:birnlex_1421 xref: SCTID:369244006 xref: ZFA:0000275 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0000988 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pons disjoint_from: UBERON:0010036 ! anterior tegmental nucleus property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0002439 name: myenteric nerve plexus namespace: uberon alt_id: UBERON:MA_0001148-FMA_63252 def: "Part of the enteric nervous system, Auerbach's plexus (or myenteric plexus) exists between the longitudinal and circular layers of muscularis externa in the gastrointestinal tract and provides motor innervation to both layers and secretomotor innervation to the mucosa, having both parasympathetic and sympathetic input, whereas Meissner's plexus has only parasympathetic fibers. It arises from cells in the Nucleus ala cinerea, the parasympathetic nucleus of origin for the tenth cranial nerve, located in the medulla oblongata. The fibers are carried by both the anterior and posterior vagal nerves. It is found in the muscles of the esophagus, stomach, and intestine. The myenteric plexus is the major nerve supply to the gastrointestinal tract and control GI tract motility[WP]." [Wikipedia:Auerbach's_plexus] comment: check myenteric vs submucosal subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Auerbach's plexus" EXACT [FMA:63252] synonym: "Meissner's plexus" RELATED [FMA:63252] synonym: "Remak's plexus" EXACT [FMA:63252] synonym: "auberbach plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306] synonym: "auberbach's plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306] synonym: "auberbachs plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306] synonym: "myenteric plexus" EXACT [] synonym: "plexus myentericus" RELATED [BTO:0002436] synonym: "plexus nervosus submucosus" EXACT [FMA:63252, FMA:TA] synonym: "plexus submucosus" EXACT [FMA:63252, FMA:TA] synonym: "submucous plexus" RELATED [] xref: BTO:0002436 xref: FMA:63252 xref: GAID:798 xref: MA:0001148 xref: MESH:A.08.800.050.050.500 xref: NIF_GrossAnatomy:nlx_anat_100306 xref: SCTID:267716001 xref: ncithesaurus:Myenteric_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000429 ! enteric plexus [Term] id: UBERON:0002440 name: inferior cervical ganglion namespace: uberon alt_id: UBERON:MA_0001154-FMA_6961 def: "The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]." [Wikipedia:Inferior_cervical_ganglion] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ganglion cervicale inferioris" RELATED [BTO:0000240] synonym: "stellate ganglion" RELATED [MA:0001154] synonym: "variant cervical ganglion" EXACT [] xref: BTO:0000240 xref: EHDAA:8939 xref: EMAPA:18439 xref: FMA:6961 xref: MA:0001154 xref: RETIRED_EHDAA2:0000815 xref: SCTID:279280008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0002441 name: cervicothoracic ganglion namespace: uberon alt_id: UBERON:MA_0001157-FMA_6469 def: "The stellate ganglion (or cervicothoracic ganglion) is a sympathetic ganglion formed by the fusion of the inferior cervical ganglion and the first thoracic ganglion. Stellate ganglion is located at the level of C7, anterior to the transverse process of C7, posterior to the neck of the first rib, and just below the subclavian artery. [WP,unvetted]." [Wikipedia:Cervicothoracic_ganglion] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cervicothoracic sympathetic ganglion" EXACT [] synonym: "ganglion stellatum" EXACT [FMA:6469, FMA:TA] synonym: "stellate ganglion" EXACT [] xref: BTO:0001815 xref: EMAPA:18226 xref: FMA:6469 xref: GAID:711 xref: MA:0001157 xref: MESH:A.08.340.315.350.800 xref: SCTID:181101006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray845.png/200px-Gray845.png is_a: UBERON:0001991 ! cervical ganglion relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0002442 name: axillary nerve trunk namespace: uberon alt_id: UBERON:MA_0001175-FMA_65265 synonym: "circumflex nerve trunk" RELATED [MA:0001175] synonym: "right axillary neural trunk" EXACT [] synonym: "trunk of right axillary nerve" EXACT [FMA:65265] xref: FMA:65265 xref: MA:0001175 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002443 name: choroidal blood vessel namespace: uberon alt_id: UBERON:MA_0001237-FMA_76550 def: "A blood vessel that is part of a choroid [Obol]." [OBOL:automatic] comment: cannot find singular in FMA, using Set class synonym: "blood vessel of choroid" EXACT [OBOL:automatic] synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic] synonym: "blood vessel of choroidea" EXACT [OBOL:automatic] synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic] synonym: "choroid blood vessel" EXACT [OBOL:automatic] synonym: "choroid blood vessels" EXACT [] synonym: "choroid blood vessels set" EXACT [] synonym: "choroid coat blood vessel" EXACT [OBOL:automatic] synonym: "choroidea blood vessel" EXACT [OBOL:automatic] synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic] synonym: "vasa sanguinea choroideae" EXACT [FMA:76550, FMA:TA] xref: EMAPA:17828 xref: FMA:76550 xref: MA:0001237 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0001776 ! choroid [Term] id: UBERON:0002444 name: lens fiber namespace: uberon alt_id: UBERON:MA_0001304-FMA_76827 def: "The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long." [Wikipedia:Lens_(anatomy)#Lens_fibers] comment: TODO - check plural vs singular. in FMA lens fiber is a cell - FMA:70950 Lens cell. Other ontologies don't appear to commit one way or another. synonym: "fibrae lentis" EXACT [FMA:76827, FMA:TA] synonym: "lens fibers" EXACT [] synonym: "lens fibers set" EXACT [] synonym: "lens fibres" EXACT [] xref: BTO:0000724 xref: EHDAA:4745 xref: EHDAA:9065 xref: EMAPA:17841 xref: FMA:76827 xref: MA:0001304 xref: RETIRED_EHDAA2:0000979 xref: VHOG:0000444 xref: XAO:0004096 xref: ncithesaurus:Lens_Fiber is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0002445 name: triquetral namespace: uberon alt_id: UBERON:MA_0001347-FMA_23715 def: "The triquetral bone (also called triquetrum bone, pyramidal bone, three-cornered bone, and triangular bone) is located in the wrist on the medial side of the proximal row of the carpus between the lunate and pisiform bones. It is on the ulnar side of the hand, but does not articulate with the ulna. It connects with the pisiform, hamate, and lunate bones. It is the 3rd most commonly fractured carpal bone. The triangular bone may be distinguished by its pyramidal shape, and by an oval isolated facet for articulation with the pisiform bone. It is situated at the upper and ulnar side of the carpus. To facilitate its palpation in an exam, the hand must be radially deviated so that the triquetrium moves out from under the ulnar styloid process. The triquetrum may be difficult to find, since it also lies under the pisiform. The etymology derives from the Latin triquetrus which means 'three-cornered'. In reptiles and amphibians, the bone is instead referred to as the ulnare, since (at least in the most primitive fossils) it articulates with the ulna. [WP,unvetted]." [Wikipedia:Triquetral] comment: AAO: ulnare: One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cuneiform bone of hand" EXACT [] synonym: "cuneiform of hand" RELATED [MA:0001347] synonym: "os triquetrum" EXACT [FMA:23715, FMA:TA] synonym: "os ulnare" EXACT [UBERON:cjm] synonym: "triangular" RELATED [MA:0001347] synonym: "triangular bone" EXACT [] synonym: "triquetral bone" EXACT [] synonym: "triquetrum" RELATED [MA:0001347] synonym: "ulnar carpal bone" RELATED [MA:0001347] synonym: "ulnare" EXACT HOMOLOGY [AAO:0000845] xref: AAO:0000845 xref: FMA:23715 xref: MA:0001347 xref: SCTID:181965000 xref: galen:Triquetral xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Triangular_Bone is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0002446 name: patella namespace: uberon alt_id: UBERON:MA_0001374-FMA_24485 def: "The patella, also known as the knee cap or kneepan, is a thick, circular-triangular bone which articulates with the femur and covers and protects the knee joint. It is the largest sesamoid bone in the human body. It is attached to the tendon of the quadriceps femoris muscle, which contracts to extend/straighten the knee. The vastus intermedialis muscle is attached to the base of patella. The vastus lateralis and vastus medialis are attached to lateral and medial borders of patella respectively. The patella is stabilized by the insertion of vastus medialis and the prominence of the anterior femoral condyles, which prevent lateral dislocation during flexion. The retinacular fibres of the patella also stabilize it during exercise. The primary functional role of the patella is knee extension. The patella increases the leverage that the tendon can exert on the femur by increasing the angle at which it acts. The patella ossifies between the ages 2-6 years. In some people it may be absent congenitally or hypoplastic. In 2% of the population there is a bipartite patella, which is usually asymptomatic. Direct trauma, however, may produce symptoms that mimic those of a fracture. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. [WP,unvetted]." [Wikipedia:Patella, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834] comment: See also: fabella subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "knee bone" RELATED [FMA:24485] xref: FMA:24485 xref: GAID:203 xref: MA:0001374 xref: MESH:A.02.835.232.500.624 xref: SCTID:182083008 xref: galen:Patella xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png xref: ncithesaurus:Patella is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0003464 ! hindlimb bone is_a: UBERON:0005893 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! leg bone [Term] id: UBERON:0002447 name: palatine gland namespace: uberon alt_id: UBERON:MA_0001584-FMA_71616 def: "The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]." [Wikipedia:Palatine_gland] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "palatine glands set" EXACT [] synonym: "palatine salivary gland" EXACT [] synonym: "salivary palatine gland" EXACT [] xref: FMA:59795 xref: MA:0001584 xref: SCTID:13604002 xref: ncithesaurus:Palatine_Salivary_Gland is_a: UBERON:0001830 ! minor salivary gland [Term] id: UBERON:0002448 name: fungiform papilla namespace: uberon alt_id: UBERON:MA_0001595-FMA_71448 def: "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted]." [Wikipedia:Fungiform_papilla] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fungiform papilla of tongue" EXACT [FMA:54821] synonym: "fungiform papillae" EXACT PLURAL [] synonym: "fungiform papillae set" EXACT PLURAL [] xref: EMAPA:18657 xref: FMA:54821 xref: MA:0001595 xref: NIF_GrossAnatomy:birnlex_4106 xref: SCTID:80673002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Gray1014.png/200px-Gray1014.png xref: ncithesaurus:Fungiform_Papilla is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002450 name: decidua namespace: uberon alt_id: UBERON:MA_0001722-MIAA_0000290 def: "Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells." [Wikipedia:Decidua] comment: todo - check mp syn subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "decidous membrane" EXACT [FMA:85538] synonym: "decidua basalis" RELATED [] synonym: "endometrium" RELATED [] synonym: "maternal decidual layer" RELATED [MP:0004256] synonym: "placenta maternal decidual layer" RELATED [] synonym: "uterine decidua" RELATED [BTO:0001360] xref: BTO:0001360 xref: EMAPA:29917 xref: FMA:85538 xref: GAID:378 xref: MA:0001722 xref: MAT:0000290 xref: MESH:A.05.360.319.679.490.373 xref: MIAA:0000290 xref: SCTID:362842004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray33.png/200px-Gray33.png xref: ncithesaurus:Decidua is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0002451 name: uterine gland namespace: uberon alt_id: UBERON:MA_0001726-FMA_71647 def: "tube like gland lined by ciliated columnar epithelium[WP]. The mucous secreting gland associated with the epithelium lining the uterus. These glands develop and secrete each menstrual cycle and are thought to provide initial blastocyst nutrition prior to implantation[BTO]" [Wikipedia:Uterine_glands] comment: todo - check FMA subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "glandulae uterinae" EXACT [FMA:71647, FMA:TA] synonym: "uterine glands" EXACT [] synonym: "uterine glands set" EXACT [] xref: BTO:0003433 xref: BTO:0004518 xref: EMAPA:29919 xref: FMA:71647 xref: FMA:86488 xref: MA:0001726 xref: SCTID:361377009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray1169.png/200px-Gray1169.png xref: ncithesaurus:Uterine_Gland is_a: UBERON:0002530 ! gland is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002453 name: ethmoid sinus namespace: uberon alt_id: UBERON:MA_0001792-FMA_84115 def: "The ethmoid sinus, one of the paranasal sinuses, is the collective name for the ethmoidal air cells. Each ethmoid sinus is an air-space enclosed within the ethmoid bone. The ethmoidal air cells consist of numerous thin-walled cavities situated in the ethmoidal labyrinth and completed by the frontal, maxilla, lacrimal, sphenoidal, and palatine bones. They lie between the upper parts of the nasal cavities and the orbits, and are separated from these cavities by thin bony laminC&. [WP,unvetted]." [Wikipedia:Ethmoid_sinus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ethmoidal sinus" EXACT [FMA:84115] xref: FMA:84115 xref: GAID:356 xref: MA:0001792 xref: MESH:A.04.531.621.267 xref: SCTID:181206009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png xref: ncithesaurus:Ethmoid_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0002454 name: dorsal metacarpal artery namespace: uberon alt_id: UBERON:MA_0001944-FMA_70800 def: "Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries." [Wikipedia:Dorsal_metacarpal_artery] comment: check FMA, singular. specific subtypes e.g. FMA:22761 first dorsal metacarpal artery subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arteriae metacarpales dorsales" EXACT [FMA:70800, FMA:TA] synonym: "dorsal metacarpal arteries" EXACT [] synonym: "dorsal metacarpal arteries set" EXACT [] xref: FMA:70800 xref: MA:0001944 xref: SCTID:244320002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray529.png/200px-Gray529.png xref: ncithesaurus:Dorsal_Metacarpal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002455 name: common plantar digital arteries namespace: uberon alt_id: UBERON:MA_0001966-FMA_70821 def: "." [Wikipedia:Common_plantar_digital_arteries] synonym: "arteriae digitales plantares communes" EXACT [FMA:70821, FMA:TA] synonym: "common plantar digital arteries" EXACT [] synonym: "common plantar digital arteries set" EXACT [FMA:70821] xref: FMA:70821 xref: MA:0001966 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png is_a: UBERON:0006138 ! plantar digital artery [Term] id: UBERON:0002456 name: internal thoracic artery namespace: uberon alt_id: UBERON:MA_0001984-FMA_3960 def: "In human anatomy, the internal thoracic artery (ITA), previously known as the internal mammary artery (a name still common among surgeons), is an artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]." [Wikipedia:Internal_thoracic_artery] comment: note MA has both mammary and thoracic subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "internal mammary artery" EXACT ATTRIBUTION_REQUIRED [MA:0001982] synonym: "internal thoracic mammary artery" EXACT [] xref: EHDAA2:0000880 xref: EHDAA:8585 xref: EMAPA:18617 xref: FMA:3960 xref: MA:0001982 xref: MA:0001984 xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw xref: SCTID:244239009 xref: ncithesaurus:Internal_Mammary_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: part_of UBERON:0001533 ! subclavian artery [Term] id: UBERON:0002457 name: intersegmental artery namespace: uberon alt_id: UBERON:MA_0001985-ZFA_0001061 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "7th intersegmental artery" EXACT [] synonym: "seventh intersegmental artery" EXACT [] xref: EHDAA2:0000882 xref: EHDAA:4340 xref: EMAPA:17616 xref: MA:0001985 xref: SCTID:338130007 xref: VHOG:0000225 xref: ZFA:0001061 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002458 name: spinal artery namespace: uberon alt_id: UBERON:MA_0002043-ZFA_0000682 def: "." [Wikipedia:Spinal_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "spinal arteries" RELATED [ZFA:0000682] xref: EHDAA2:0001890 xref: EHDAA:4355 xref: EMAPA:18241 xref: MA:0002043 xref: SCTID:244228006 xref: ZFA:0000682 xref: ncithesaurus:Spinal_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0004258 ! back blood vessel [Term] id: UBERON:0002459 name: inferior palpebral vein namespace: uberon alt_id: UBERON:MA_0002147-FMA_70847 comment: check FMA, singular. synonym: "inferior palpebral veins" EXACT [] synonym: "inferior palpebral veins set" EXACT [] synonym: "lower palpebral vein" RELATED [MA:0002147] synonym: "venae palpebrales inferiores" EXACT [FMA:70847, FMA:TA] xref: FMA:70847 xref: MA:0002147 xref: SCTID:422559003 xref: ncithesaurus:Inferior_Palpebral_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002460 name: vesical vein namespace: uberon alt_id: UBERON:MA_0002263-FMA_70911 def: "The vesical veins are tributaries of the internal iliac veins. [WP,unvetted]." [Wikipedia:Vesical_vein] comment: check FMA, singular. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "venae vesicales" EXACT [FMA:70911, FMA:TA] synonym: "vesical veins" EXACT [] synonym: "vesical veins set" EXACT [] xref: FMA:70911 xref: MA:0002263 xref: SCTID:12683000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002461 name: anterior abdominal wall muscle namespace: uberon alt_id: UBERON:MA_0002268-FMA_20278 synonym: "muscle of anterior abdominal wall" EXACT [FMA:20278] xref: EHDAA2:0000125 xref: FMA:20278 xref: MA:0002268 xref: ncithesaurus:Anterior_Abdominal_Wall_Muscle is_a: UBERON:0002378 ! muscle of abdomen relationship: part_of UBERON:0006635 ! anterior abdominal wall [Term] id: UBERON:0002462 name: erector spinae namespace: uberon alt_id: UBERON:MA_0002289-FMA_71302 def: "The Erector spinC& is a muscle of the back in humans and other animals. It is also known as sacrospinalis in older texts. A more modern term is extensor spinae, though this is not in widespread use. The name of the muscle is pronounced e-rec-tor speen-aye, or e-rec-tor spinae-ee. It is really not just one muscle, but a bundle of muscles and tendons. It is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column. Erector spinae is covered in the lumbar and thoracic regions by the lumbodorsal fascia, and in the cervical region by the nuchal ligament. This large muscular and tendinous mass varies in size and structure at different parts of the vertebral column. In the sacral region it is narrow and pointed, and at its origin chiefly tendinous in structure. In the lumbar region it is larger, and forms a thick fleshy mass which, on being followed upward, is subdivided into three columns; these gradually diminish in size as they ascend to be inserted into the vertebrC& and ribs. The erector spinae arises from the anterior surface of a broad and thick tendon, which is attached to the medial crest of the sacrum, to the spinous processes of the lumbar and the eleventh and twelfth thoracic vertebrC&, and the supraspinal ligament, to the back part of the inner lip of the iliac crests and to the lateral crests of the sacrum, where it blends with the sacrotuberous and posterior sacroiliac ligaments. Some of its fibers are continuous with the fibers of origin of the GlutC&us maximus. The muscular fibers form a large fleshy mass which splits, in the upper lumbar region into three columns, viz. , a lateral, the Iliocostalis, an intermediate, the Longissimus, and a medial, the Spinalis. Each of these consists from below upward, of three parts, as follows: [WP,unvetted]." [Wikipedia:Erector_spinae] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "erector spinae muscle group" EXACT [FMA:71302] synonym: "extensor spinae" EXACT [Wikipedia:Erector_spinae] xref: BTO:0001652 xref: EHDAA2:0000454 xref: EHDAA:9456 xref: EMAPA:18168 xref: FMA:71302 xref: MA:0002289 xref: OpenCyc:Mx4rwC7lnJwpEbGdrcN5Y29ycA xref: VHOG:0000984 xref: ncithesaurus:Erector_Spinae is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002463 name: hamstring muscle namespace: uberon alt_id: UBERON:MA_0002312-FMA_81022 def: "In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted]." [Wikipedia:Hamstring] comment: check FMA, singular. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hamstring muscles" EXACT [] synonym: "hamstring muscles set" EXACT [] synonym: "hamstrings" EXACT [] xref: BTO:0003179 xref: EHDAA2:0000727 xref: EHDAA:8295 xref: EMAPA:19072 xref: EMAPA:19145 xref: FMA:81022 xref: MA:0002312 xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA xref: VHOG:0000844 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG xref: ncithesaurus:Hamstring is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002464 name: nerve trunk namespace: uberon alt_id: UBERON:MA_0002408-FMA_5913 synonym: "trunk of nerve" EXACT [] xref: BTO:0000927 xref: EHDAA:4675 xref: EMAPA:16986 xref: FMA:5913 xref: MA:0002408 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002465 name: lymphoid system namespace: uberon alt_id: UBERON:0002096 alt_id: UBERON:MA_0002435-FMA_74594 def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [Wikipedia:Lymphoid_system, https://sourceforge.net/tracker/?func=detail&aid=3153468&group_id=76834&atid=1205376] comment: We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lymphatic circulatory system" RELATED [UBERON:cjm] synonym: "lymphatic system" NARROW [ZFA:0000385] xref: AAO:0010522 xref: EFO:0000870 xref: EHDAA2:0001043 xref: EHDAA:8677 xref: EMAPA:18248 xref: FMA:74594 xref: GAID:931 xref: MA:0002435 xref: MAT:0000197 xref: MIAA:0000197 xref: OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA xref: SCTID:362589007 xref: VHOG:0000842 xref: XAO:0003199 xref: ZFA:0000385 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Illu_capillary_microcirculation.jpg/200px-Illu_capillary_microcirculation.jpg xref: ncithesaurus:Lymphatic_System is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004535 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cardiovascular system relationship: part_of UBERON:0002193 ! hemolymphoid system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0002466 name: intestine secretion namespace: uberon alt_id: UBERON:MA_0002515-FMA_62974 def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [Wikipedia:Succus_entericus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intestinal secretion" EXACT [FMA:62974] synonym: "succus entericus" EXACT [] xref: BTO:0000644 xref: FMA:62974 xref: GAID:1162 xref: MA:0002515 xref: MESH:A.12.200.390 xref: ncithesaurus:Intestinal_Secretion is_a: UBERON:0000456 ! bodily secretion is_a: UBERON:0006911 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! digestive system fluid or secretion [Term] id: UBERON:0002467 name: filiform papilla namespace: uberon alt_id: UBERON:MA_0002678-FMA_71447 def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [Wikipedia:Filiform_papilla] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "filiform papilla of tongue" EXACT [FMA:54820] synonym: "filiform papillae" EXACT [] synonym: "filiform papillae set" EXACT [] xref: EMAPA:18655 xref: EMAPA:18873 xref: FMA:54820 xref: MA:0002678 xref: NIF_GrossAnatomy:birnlex_4104 xref: SCTID:58743008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1016.png/200px-Gray1016.png xref: ncithesaurus:Filiform_Papilla is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002468 name: foliate papilla namespace: uberon alt_id: UBERON:MA_0002679-FMA_71450 def: "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted]." [Wikipedia:Foliate_papilla] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "foliate papilla of tongue" EXACT [FMA:54823] synonym: "foliate papillae" EXACT [] synonym: "foliate papillae set" EXACT [] xref: FMA:54823 xref: MA:0002679 xref: NIF_GrossAnatomy:birnlex_4105 xref: SCTID:362098003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png xref: ncithesaurus:Foliate_Papilla is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002469 name: esophagus mucosa namespace: uberon alt_id: UBERON:0003345 alt_id: UBERON:MA_0002680-FMA_62996 def: "A mucosa that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "esophageal mucosa" EXACT [] synonym: "esophagus mucosa" EXACT [FMA:62996] synonym: "esophagus mucosa of organ" EXACT [OBOL:automatic] synonym: "esophagus mucous membrane" EXACT [OBOL:automatic] synonym: "esophagus organ mucosa" EXACT [OBOL:automatic] synonym: "gullet mucosa" EXACT [OBOL:automatic] synonym: "gullet mucosa of organ" EXACT [OBOL:automatic] synonym: "gullet mucous membrane" EXACT [OBOL:automatic] synonym: "gullet organ mucosa" EXACT [OBOL:automatic] synonym: "lamina muscularis mucosae oesophageae" EXACT [FMA:62996, FMA:TA] synonym: "mucosa of esophagus" EXACT [OBOL:automatic] synonym: "mucosa of gullet" EXACT [OBOL:automatic] synonym: "mucosa of oesophagus" EXACT [OBOL:automatic] synonym: "mucosa of organ of esophagus" EXACT [OBOL:automatic] synonym: "mucosa of organ of gullet" EXACT [OBOL:automatic] synonym: "mucosa of organ of oesophagus" EXACT [OBOL:automatic] synonym: "mucous membrane of esophagus" EXACT [] synonym: "mucous membrane of gullet" EXACT [OBOL:automatic] synonym: "mucous membrane of oesophagus" EXACT [FMA:62996] synonym: "muscularis mucosae of oesophagus" RELATED INCONSISTENT [FMA:62996] synonym: "oesophageal mucosa" EXACT [FMA:62996] synonym: "oesophagus mucosa" EXACT [] synonym: "oesophagus mucosa of organ" EXACT [OBOL:automatic] synonym: "oesophagus mucous membrane" EXACT [OBOL:automatic] synonym: "oesophagus organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of esophagus" EXACT [OBOL:automatic] synonym: "organ mucosa of gullet" EXACT [OBOL:automatic] synonym: "organ mucosa of oesophagus" EXACT [OBOL:automatic] synonym: "tunica mucosa oesophageae" EXACT [FMA:62996, FMA:TA] synonym: "tunica mucosa oesophagi" RELATED [BTO:0002859] xref: BTO:0002859 xref: EMAPA:26981 xref: EMAPA:26991 xref: FMA:62996 xref: MA:0002680 xref: SCTID:362127004 xref: ncithesaurus:Esophageal_Mucosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! mucosa relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0002470 name: autopod namespace: uberon alt_id: UBERON:MA_0002714-MIAA_0000091 def: "Terminal segment of free upper limb. The generic name for hand, paw, foot etc" [UBERON:cjm] comment: Naming conventions for pod terms under discussion within phenoscape group subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "autopodial limb segment" EXACT [MA:th] synonym: "autopodium" EXACT [] synonym: "distal free limb segment" EXACT [FMA:83015] synonym: "distal segment of free limb" EXACT [FMA:83015] synonym: "paw" RELATED [] synonym: "pod" RELATED [] xref: BTO:0004359 xref: EFO:0000877 xref: FMA:83015 xref: MA:0002714 xref: MAT:0000091 xref: MIAA:0000091 xref: SCTID:95936004 xref: ncithesaurus:Paw is_a: UBERON:0002529 ! limb segment [Term] id: UBERON:0002471 name: zeugopod namespace: uberon alt_id: UBERON:MA_0002716-MIAA_0000092 def: "The middle part of the limb (e.g. between the elbow and wrist)" [] comment: Naming conventions for pod terms under discussion within phenoscape group subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "epipodium" EXACT [MA:th] synonym: "middle free limb segment" EXACT [FMA:83016] synonym: "middle limb segment" EXACT [] synonym: "middle part of limb" BROAD [] synonym: "zeugopodial limb segment" EXACT [MA:th] synonym: "zeugopodium" EXACT [] xref: EFO:0000878 xref: FMA:83016 xref: MA:0002716 xref: MAT:0000092 xref: MIAA:0000092 is_a: UBERON:0002529 ! limb segment [Term] id: UBERON:0002472 name: stylopod namespace: uberon alt_id: UBERON:MA_0002717-MIAA_0000093 def: "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." [] comment: Naming conventions for pod terms under discussion within phenoscape group subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "propodium" EXACT [MA:th] synonym: "proximal free limb segment" EXACT [FMA:83014] synonym: "proximal part of limb" BROAD [] synonym: "stylopodial limb segment" EXACT [MA:th] synonym: "stylopodium" EXACT [] xref: EFO:0000879 xref: FMA:83014 xref: MA:0002717 xref: MAT:0000093 xref: MIAA:0000093 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002473 name: intercerebral commissure namespace: uberon alt_id: UBERON:MA_0002721-FMA_67930 def: "Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]." [FMA:67930] synonym: "brain commissure" NARROW [] synonym: "interhemispheric commissure" RELATED [MA:0002721] xref: FMA:67930 xref: MA:0002721 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0002474 name: cerebellar peduncular complex namespace: uberon alt_id: UBERON:MA_0002742-FMA_77791 def: "A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF]." [NIF_GrossAnatomy:birnlex_970, Wikipedia:Cerebellar_peduncle] comment: todo - this requires work for making consistent with ABA, which strictly separates cerebellum from brainstem. in MA, cerebellar peduncle is part of both brainstem and cerebellar white matter. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cerebellar peduncles" EXACT [] synonym: "cerebellar peduncles and decussations" EXACT [NIF_GrossAnatomy:birnlex_970] synonym: "cerebellar peduncles set" EXACT [] synonym: "cerebellum peduncles" EXACT [] synonym: "pedunculi cerebellares" EXACT [FMA:77791, FMA:TA] xref: FMA:77791 xref: NIF_GrossAnatomy:birnlex_970 is_a: UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0002475 name: saphenous nerve namespace: uberon alt_id: UBERON:MA_0002761-FMA_45262 def: "The saphenous nerve (long or internal saphenous nerve) is the largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:45262 xref: MA:0002761 xref: OpenCyc:Mx4rvY0kgpwpEbGdrcN5Y29ycA xref: SCTID:181079005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray827.png/200px-Gray827.png is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! leg nerve [Term] id: UBERON:0002476 name: lateral globus pallidus namespace: uberon alt_id: UBERON:MA_0002767-FMA_61839 def: "The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted]." [Wikipedia:Lateral_globus_pallidus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "external globus pallidus" EXACT [] synonym: "external pallidum" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "external part of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "globus pallidus external segment" EXACT [FMA:61839, MA:0002767, NIF_GrossAnatomy:birnlex_1610] synonym: "globus pallidus externus" EXACT [] synonym: "globus pallidus lateral segment" RELATED [MA:0002767] synonym: "globus pallidus lateralis" EXACT [BTO:0002247] synonym: "globus pallidus, lateral segment" EXACT [] synonym: "lateral pallidal segment" EXACT [] synonym: "lateral pallidum" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "lateral part of globus pallidus" EXACT [] synonym: "lateral segment of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "pallidum I" RELATED [BTO:0002247] synonym: "pallidus II" EXACT [FMA:61839] synonym: "pars lateralis globi pallidi medialis" EXACT [FMA:61839, FMA:TA] xref: ABA:GPe xref: BTO:0002247 xref: EHDAA2:0004462 xref: FMA:61839 xref: MA:0002767 xref: NIF_GrossAnatomy:birnlex_1610 xref: SCTID:361560008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001875 ! globus pallidus property_value: "spatially_disjoint_from" UBERON:0002477 [Term] id: UBERON:0002477 name: medial globus pallidus namespace: uberon alt_id: UBERON:MA_0002768-FMA_61840 def: "The medial globus pallidus (or internal, GPi) is one of the output nuclei of the basal ganglia. The GABA-containing neurons send their axons to specific nuclei of the dorsal thalamus (VA and VL), to the centromedian complex and to the pedunculopontine complex. The efferent bundle is constituted first of the ansa and fasciculus lenticularis, then crosses the internal capsule as the Edinger's comb system then arrives at the laterosuperior corner of the subthalamic nucleus and constitutes the Forel's field H2, then H, and suddenly changes its direction to form H1 that goes to the inferior part of the thalamus. The distribution of axonal islands is widespread in the lateral region of the thalamus. The innervation of the central region is done by collaterals. [WP,unvetted]." [Wikipedia:Medial_globus_pallidus] comment: See also: endopeduncular nucleus subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "entopeduncular nucleus" RELATED [MA:0002768] synonym: "entopeduncular nucleus (monakow)" EXACT [] synonym: "globus pallidus inernal segment" RELATED [MA:0002768] synonym: "globus pallidus internal segment" EXACT [] synonym: "globus pallidus internus" EXACT [] synonym: "globus pallidus medial segment" RELATED [MA:0002768] synonym: "globus pallidus medialis" EXACT [BTO:0002248] synonym: "globus pallidus, medial segment" EXACT [] synonym: "internal globus pallidus" EXACT [] synonym: "internal pallidum" EXACT [NIF_GrossAnatomy:birnlex_1555] synonym: "internal part of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1555] synonym: "medial pallidal segment" EXACT [] synonym: "medial part of globus pallidus" EXACT [] synonym: "medial segment of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1555] synonym: "mesial pallidum" EXACT [] synonym: "pallidum I" RELATED [] synonym: "pallidus I" RELATED [] synonym: "pars medialis globi pallidi" EXACT [FMA:61840, FMA:TA] xref: ABA:GPi xref: BTO:0002248 xref: FMA:61840 xref: MA:0002768 xref: NIF_GrossAnatomy:birnlex_1555 xref: SCTID:361562000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001875 ! globus pallidus property_value: "spatially_disjoint_from" UBERON:0002476 [Term] id: UBERON:0002478 name: lesser wing of sphenoid bone namespace: uberon alt_id: UBERON:MA_0002773-ZFA_0000253 def: "One of two thin triangular plates, which arise from the upper and anterior parts of the body, and, projecting lateralward, end in sharp points." [Wikipedia:Lesser_wing_of_sphenoid_bone] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ala minor (os sphenoidale)" EXACT [FMA:52869] synonym: "ingrassia's process" EXACT [FMA:52869] synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbitosphenoid" EXACT [MA:0002773] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 xref: MA:0002773 xref: SCTID:361737003 xref: VHOG:0001153 xref: ZFA:0000253 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0003111 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! sphenoid region [Term] id: UBERON:0002479 name: dorsal lateral geniculate nucleus namespace: uberon alt_id: UBERON:MA_0002775-FMA_62214 synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] synonym: "lateral geniculate complex, dorsal part" EXACT [] synonym: "nucleus dorsalis corporis geniculati lateralis" EXACT [FMA:62214, FMA:TA] synonym: "nucleus geniculatus lateralis pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1595] xref: ABA:LGd xref: BM:GLd xref: FMA:62214 xref: MA:0002775 xref: NIF_GrossAnatomy:birnlex_1595 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001926 ! lateral geniculate body property_value: "spatially_disjoint_from" UBERON:0001927 [Term] id: UBERON:0002480 name: ventral lateral geniculate nucleus namespace: uberon alt_id: UBERON:MA_0002776-FMA_62215 synonym: "corpus geniculatum externum, nucleus accessorius" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "corpus geniculatum laterale, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "dorsal_nucleus_of_lateral_geniculate_body" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "griseum praegeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "lateral geniculate complex, ventral part" EXACT [] synonym: "lateral geniculate complex, ventral part (kolliker)" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "lateral geniculate nucleus, ventral part" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus corporis geniculati lateralis, pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus praegeniculatus" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus pregeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus pregeniculatus" EXACT [FMA:62215, FMA:TA] synonym: "nucleus ventralis corporis geniculati lateralis" EXACT [FMA:62215, FMA:TA] synonym: "praegeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "pregeniculate nucleus" EXACT [] synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776] synonym: "ventral part of the lateral geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_1597] xref: ABA:LGv xref: BM:LGv xref: FMA:62215 xref: MA:0002776 xref: NIF_GrossAnatomy:birnlex_1597 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001926 ! lateral geniculate body [Term] id: UBERON:0002481 name: bone tissue namespace: uberon alt_id: UBERON:MA_0002780-FMA_224804 def: "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts[VAO]." [VAO:0000047, Wikipedia:Bone_tissue] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "calcium tissue" EXACT [] synonym: "osseous tissue" EXACT [] xref: FMA:224804 xref: MA:0002780 xref: MESH:A.02.835.232 xref: VAO:0000047 xref: galen:BoneTissue xref: ncithesaurus:Bone_Tissue is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004755 ! skeletal tissue relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0002482 name: lamellar bone namespace: uberon alt_id: UBERON:MA_0002781-FMA_224806 def: "Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong." [Wikipedia:Bone#Woven_or_lamellar] comment: histological classification, lamellar vs woven. Note that only FMA has woven xref: FMA:224806 xref: MA:0002781 xref: galen:LamellarBone is_a: UBERON:0002481 ! bone tissue [Term] id: UBERON:0002483 name: trabecular bone tissue namespace: uberon alt_id: UBERON:MA_0002782-FMA_24019 def: "Cancellous bone, synonymous with trabecular bone or spongy bone, is one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occupies the interior region of bones. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. Its Latin name is substantia spongiosa or substantia spongiosa ossium. The words cancellous and trabecular refer to the tiny, lattice-shaped that form the tissue. [WP,unvetted]." [Wikipedia:Trabecular_bone] comment: one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cancellated bone" RELATED [BTO:0001700] synonym: "cancellous bone" EXACT [FMA:24019, MA:0002782] synonym: "cancellous bone tissue" EXACT [] synonym: "spongy bone" EXACT [] synonym: "spongy bone tissue" EXACT [] synonym: "substantia spongiosa" EXACT [Wikipedia:Trabecular_bone] synonym: "substantia spongiosa ossium" EXACT [Wikipedia:Trabecular_bone] synonym: "substantia trabecularis ossium" RELATED [BTO:0001700] synonym: "trabecular bone" EXACT [] synonym: "trabecular substance" RELATED [BTO:0001700] xref: BTO:0001700 xref: FMA:24019 xref: MA:0002782 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Illu_compact_spongy_bone.jpg/200px-Illu_compact_spongy_bone.jpg is_a: UBERON:0002481 ! bone tissue relationship: part_of UBERON:0002482 ! lamellar bone [Term] id: UBERON:0002484 name: bone marrow cavity namespace: uberon alt_id: UBERON:MA_0002783-FMA_75147 def: "the central cavity of bone shafts where red bone marrow and/or yellow bone marrow (adipose tissue) is stored; hence, the medullary cavity is also known as the marrow cavity. Located in the main shaft (cortical bone) of a long bone (diaphysis) (consisting mostly of compact bone), the medullary cavity has walls composed of spongy bone (cancellous bone) and is lined with a thin, vascular membrane (endosteum)" [Wikipedia:Medullary_cavity] comment: AO notes: not clear if the FMA intends to have two classes. MP:0000065: \"the medullary cavities of the bones.\" synonym: "cavity of cancellous bone" EXACT [] synonym: "marrow cavity" EXACT [FMA:83698] synonym: "medullary cavity" EXACT [FMA:83698] xref: FMA:75147 xref: FMA:83698 xref: MA:0002783 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001439 ! compact bone [Term] id: UBERON:0002485 name: prostate duct namespace: uberon alt_id: UBERON:MA_0002785-FMA_19580 def: "the minute canals that pass the prostatic secretions to the urethra." [MP:0009734] synonym: "duct of prostate" EXACT [] synonym: "duct of prostate gland" EXACT [] synonym: "prostate duct" EXACT [] synonym: "prostate gland duct" EXACT [] synonym: "prostatic duct" EXACT [] xref: FMA:19580 xref: MA:0002785 xref: SCTID:362276000 xref: ncithesaurus:Prostatic_Duct is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system [Term] id: UBERON:0002486 name: glottis namespace: uberon alt_id: UBERON:MA_0002788-FMA_55414 def: "The glottis is defined as the combination of the vocal folds and the space in between the folds. [WP,unvetted]." [Wikipedia:Glottis] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010610 xref: BTO:0001627 xref: FMA:55414 xref: GAID:343 xref: MA:0002788 xref: MESH:A.04.329.364 xref: SCTID:264482000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Arytenoid_cartilage.png/200px-Arytenoid_cartilage.png xref: ncithesaurus:Glottis is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0002487 name: tooth cavity namespace: uberon alt_id: UBERON:MA_0002792-FMA_55660 def: "." [Wikipedia:Tooth_cavity] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cavitas dentis" EXACT [] synonym: "cavitas pulparis" EXACT [FMA:55660, FMA:TA] synonym: "cavity of tooth" RELATED [MA:0002792] synonym: "pulp cavity" EXACT [] synonym: "pulp cavity of tooth" EXACT [] synonym: "tooth pulp cavity" RELATED [MA:0002792] xref: FMA:55660 xref: MA:0002792 xref: MESH:A.14.254.900.265 xref: SCTID:362105008 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0002488 name: helix namespace: uberon alt_id: UBERON:MA_0002793-FMA_60992 def: "." [Wikipedia:Helix] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "helical part of pinna" EXACT [] synonym: "helix (auricula)" EXACT [] synonym: "helix of auricle of ear" EXACT [] synonym: "helix of ear" EXACT [] synonym: "helix of pinna" EXACT [] xref: FMA:60992 xref: MA:0002793 xref: OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA xref: SCTID:279607004 xref: ncithesaurus:Helix is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0002489 name: coronal suture namespace: uberon alt_id: UBERON:MA_0002795-FMA_52928 def: "The coronal suture is a dense, fibrous connective tissue joint that separates the frontal and parietal bones of the skull. At birth, the bones of the skull do not meet. [WP,unvetted]." [Wikipedia:Coronal_suture] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "coronal suture of skull" EXACT [] xref: EMAPA:19225 xref: FMA:52928 xref: MA:0002795 xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA xref: SCTID:244510008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray188-Coronal_suture.png/200px-Gray188-Coronal_suture.png is_a: UBERON:0003685 ! cranial suture relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002490 name: frontal suture namespace: uberon alt_id: UBERON:MA_0002796-FMA_52989 def: "The frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]." [Wikipedia:Frontal_suture] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "frontal suture of skull" EXACT [] synonym: "metopic suture" RELATED [MA:0002796] synonym: "sutura frontalis" EXACT [Wikipedia:Frontal_suture] synonym: "sutura metopica" EXACT [FMA:52989, FMA:TA] xref: EMAPA:19226 xref: FMA:52989 xref: MA:0002796 xref: SCTID:136854008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray134.png/200px-Gray134.png is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0002491 name: lambdoid suture namespace: uberon alt_id: UBERON:MA_0002797-FMA_52933 def: "The lambdoid suture (or lambdoidal suture) is a dense, fibrous connective tissue joint on the posterior aspect of the skull that connects the parietal and temporal bones with the occipital bone. Its name comes from its lambda-like shape. [WP,unvetted]." [Wikipedia:Lambdoid_suture] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lambdoid suture of skull" EXACT [] synonym: "lambdoidal suture" RELATED [MA:0002797] xref: EMAPA:19227 xref: FMA:52933 xref: MA:0002797 xref: SCTID:361830007 is_a: UBERON:0003685 ! cranial suture relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002492 name: sagittal suture namespace: uberon alt_id: UBERON:MA_0002798-FMA_52929 def: "The sagittal suture is a dense, fibrous connective tissue joint between the two parietal bones of the skull. At birth, the bones of the skull do not meet. If certain bones of the skull grow too fast then 'premature closure' of the sutures may occur. This can result in skull deformities. If the sagittal suture closes early the skull becomes long, narrow, and wedge-shaped, a condition called 'scaphocephaly. ' Two anatomical landmarks are found on the sagittal suture: the bregma and the vertex of the skull. The bregma is formed by the intersection of the sagittal and coronal sutures, and the vertex is the highest point on the skull and is many times near the midpoint of the sagittal suture. The sagittal suture is also known as the 'interparietal suture' and the 'sutura interparietalis. ' The term is derived from the Latin word Sagitta, meaning 'arrow'. The derivation of this term may be demonstrated by observing how the sagittal suture is notched posteriorly, like an arrow, by the lambdoid suture. [WP,unvetted]." [Wikipedia:Sagittal_suture] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sagittal suture of skull" EXACT [] xref: EMAPA:19224 xref: FMA:52929 xref: MA:0002798 xref: SCTID:244511007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Kort-lang-skalle.gif/200px-Kort-lang-skalle.gif is_a: UBERON:0003685 ! cranial suture relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002493 name: uterine artery namespace: uberon alt_id: UBERON:MA_0002799-FMA_18829 def: "The uterine artery is an artery in females that supplies blood to the uterus. [WP,unvetted]." [Wikipedia:Uterine_artery] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:18829 xref: MA:0002799 xref: SCTID:244300003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png is_a: UBERON:0001637 ! artery is_a: UBERON:0006955 ! uterine epithelium [Term] id: UBERON:0002494 name: papillary muscle namespace: uberon alt_id: UBERON:MA_0002800-FMA_12154 def: "In anatomy, the papillary muscles of the heart serve to limit the movements of the mitral and tricuspid valves. These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities. [WP,unvetted]." [Wikipedia:Papillary_muscle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "papillary muscle of ventricle" EXACT [MA:0002800] synonym: "ventricular papillary muscle" EXACT [MA:0002800] synonym: "ventricule papillary muscle" EXACT [] xref: EHDAA:8655 xref: FMA:12154 xref: GAID:175 xref: MA:0002800 xref: MESH:A.02.633.580.680 xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ xref: SCTID:279329009 xref: VHOG:0001392 xref: galen:PapillaryMuscle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Papillary_muscles.png/200px-Papillary_muscles.png xref: ncithesaurus:Papillary_Muscle is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0002495 name: long bone namespace: uberon alt_id: UBERON:MA_0002802-FMA_7474 def: "those that are longer than they are wide, and grow primarily by elongation of the diaphysis, with an epiphysis at the ends of the growing bone. The ends of epiphyses are covered with a hyaline cartilage ('articular cartilage'). The longitudinal growth of long bones is a result of endochondral ossification at the epiphyseal plate. Bone growth in length is stimulated by the production of growth hormone (GH), a secretion of the anterior lobe of the pituitary gland. The long bones include the femurs, tibias, and fibulas of the legs, the humeri, radii, and ulnas of the arms, metacarpals and metatarsals of the hands and feet, and the phalanges of the fingers and toes. The long bones of the human leg comprise nearly half of adult height. The other primary skeletal component of height is the spine and skull. The outside of the bone consists of a layer of connective tissue called the periosteum. Additionally, the outer shell of the long bone is compact bone, then a deeper layer of cancellous bone (spongy bone) which contains red bone marrow. The interior part of the long bone is the medullary cavity with the inner core of the bone cavity being composed of (in adults) of yellow marrow. There are five general classifications of bones: (1) Long bones, (2) Short bones, (3) Flat bones, (4) Irregular bones, and (5) Sesamoid bones[WP]." [Wikipedia:Long_bone] comment: Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004256 xref: FMA:7474 xref: MA:0002802 xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA xref: SCTID:332709000 xref: galen:LongBone xref: ncithesaurus:Long_Bone is_a: UBERON:0001474 ! bone relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0002496 name: stapes base namespace: uberon alt_id: UBERON:MA_0002804-FMA_52769 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "base of stapes" RELATED [MA:0002804] synonym: "footplate" RELATED [] synonym: "stapes footplate" RELATED [MA:0002804] xref: EHDAA:5143 xref: EHDAA:6096 xref: FMA:52769 xref: MA:0002804 xref: SCTID:279685009 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001687 ! stapes [Term] id: UBERON:0002497 name: acromion namespace: uberon alt_id: UBERON:MA_0002805-FMA_23260 def: "The acromion process, or simply the acromion, is an anatomical feature on the shoulder blade, together with the coracoid process extending laterally over the shoulder joint. [WP,unvetted]." [Wikipedia:Acromion] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000826 xref: EMAPA:25119 xref: FMA:23260 xref: GAID:187 xref: MA:0002805 xref: MESH:A.02.835.232.087.783.261 xref: OpenCyc:Mx4rvmrF8pwpEbGdrcN5Y29ycA xref: SCTID:181911000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/79/Gray206.png/200px-Gray206.png xref: ncithesaurus:Acromion is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0002498 name: deltoid tuberosity namespace: uberon alt_id: UBERON:MA_0002808-FMA_23418 def: "The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. [WP,unvetted]." [Wikipedia:Deltoid_tuberosity] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "deltoid crest" EXACT [MP:0004353] synonym: "deltoid eminence" EXACT [MP:0004353] synonym: "deltoid impression" EXACT [MP:0004353] synonym: "deltoid process" EXACT [MP:0004353] synonym: "deltoid tuberosity of humerus" EXACT [FMA:23418] synonym: "tuberositas deltoidea" EXACT [FMA:23418, FMA:TA] synonym: "tuberositas deltoidea (corpus humeri)" EXACT [] xref: EMAPA:25052 xref: FMA:23418 xref: MA:0002808 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/HumerusFront.png/200px-HumerusFront.png is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0004652 ! humerus diaphysis [Term] id: UBERON:0002499 name: cochlear labyrinth namespace: uberon alt_id: UBERON:MA_0002809-FMA_61259 def: "For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth] comment: WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0004686 xref: FMA:61259 xref: MA:0002809 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png xref: ncithesaurus:Cochlear_Labyrinth is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0002500 name: zygomatic arch namespace: uberon alt_id: UBERON:MA_0002810-FMA_53120 def: "The zygomatic arch or cheek bone is formed by the zygomatic process of temporal bone (a bone extending forward from the side of the skull, over the opening of the ear) and the temporal process of the zygomatic bone (the side of the cheekbone), the two being united by an oblique suture; the tendon of the Temporalis passes medial to the arch to gain insertion into the coronoid process of the mandible. The term zygomatic derives from the Latin zyosislymore meaning malar bone or cheekbone. The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. [WP,unvetted]." [Wikipedia:Zygomatic_arch] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "zygoma" EXACT [] xref: FMA:53120 xref: MA:0002810 xref: MESH:A.02.835.232.781.324.995 xref: OpenCyc:Mx4rvih1YZwpEbGdrcN5Y29ycA xref: SCTID:272682006 xref: galen:Zygoma xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray188-Sphenozygomatic_suture.png/200px-Gray188-Sphenozygomatic_suture.png xref: ncithesaurus:Zygomatic_Arch is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003465 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! chondrocranium bone [Term] id: UBERON:0002501 name: oval window namespace: uberon alt_id: UBERON:MA_0002813-FMA_56913 def: "The oval window (or vestibular window) is a membrane-covered opening which leads from the middle ear to the vestibule of the inner ear. Vibrations that come into contact with the tympanic membrane travel through the three ossicles and into the inner ear. The oval window is the intersection of the middle ear with the inner ear, and is directly contacted by the stapes; by the time vibrations reach the oval window, they have been amplified over twenty times from what they were when they contacted the tympanic membrane, a testament to the amplifying power of the middle ear. It is a reniform (kidney-shaped) opening leading from the tympanic cavity into the vestibule of the internal ear; its long diameter is horizontal, and its convex border is upward. In the recent state it is occupied by the base of the stapes, the circumference of which is fixed by the annular ligament to the margin of the foramen. [WP,unvetted]." [Wikipedia:Oval_window] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "oval window of petrous part of temporal bone" EXACT [] synonym: "vestibular window" RELATED [MA:0002813] xref: FMA:56913 xref: GAID:882 xref: MA:0002813 xref: MESH:A.09.246.631.909.551 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png is_a: UBERON:0000161 ! orifice is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0001694 ! petrous part of temporal bone [Term] id: UBERON:0002502 name: round window namespace: uberon alt_id: UBERON:MA_0002814-FMA_56932 def: "The round window is one of the two openings into the cochlea of the inner ear. It is closed off from the middle ear by the round window membrane, which vibrates with opposite phase to vibrations entering the cochlea through the oval window. It allows fluid in the cochlea to move, which in turn ensures that hair cells of the basilar membrane will be stimulated and that audition will occur. [WP,unvetted]." [Wikipedia:Round_window] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cochlear window" RELATED [MA:0002814] synonym: "round window of petrous part of temporal bone" EXACT [] xref: FMA:56932 xref: GAID:878 xref: MA:0002814 xref: MESH:A.09.246.631.246.814 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png is_a: UBERON:0000161 ! orifice is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0001694 ! petrous part of temporal bone [Term] id: UBERON:0002503 name: greater trochanter namespace: uberon alt_id: UBERON:MA_0002822-FMA_32852 def: "The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]." [Wikipedia:Greater_trochanter] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "greater trochanter of femur" EXACT [] xref: FMA:32852 xref: MA:0002822 xref: SCTID:182050001 xref: galen:GreaterTrochanter xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray243.png/200px-Gray243.png is_a: UBERON:0000980 ! trochanter relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0002504 name: lesser trochanter namespace: uberon alt_id: UBERON:MA_0002823-FMA_32853 def: "The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]." [Wikipedia:Lesser_trochanter] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lesser trochanter of femur" EXACT [] xref: FMA:32853 xref: MA:0002823 xref: SCTID:182051002 xref: galen:LesserTrochanter xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png xref: ncithesaurus:Lesser_Trochanter is_a: UBERON:0000980 ! trochanter relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0002505 name: spiral modiolar artery namespace: uberon alt_id: UBERON:MA_0002824-FMA_52312 def: "the artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629] xref: FMA:52312 xref: MA:0002824 xref: SCTID:149380004 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002506 name: iris epithelium namespace: uberon alt_id: UBERON:MA_0002826-FMA_58517 def: "An epithelium that is part of a iris [Obol]." [OBOL:automatic] synonym: "epithelial tissue of iris" EXACT [OBOL:automatic] synonym: "epithelium of iris" EXACT [OBOL:automatic] synonym: "epithelium pigmentosum (iris)" EXACT [FMA:58517] synonym: "epithelium pigmentosum iridis" EXACT [FMA:58517, FMA:TA] synonym: "iris epithelial tissue" EXACT [OBOL:automatic] synonym: "iris epithelium" EXACT [FMA:58517] synonym: "iris pigmented epithelium" RELATED [MA:0002826] synonym: "pigmented epithelium of iris" EXACT [FMA:58517] xref: FMA:58517 xref: MA:0002826 is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0002507 name: abdominal lymph node namespace: uberon alt_id: UBERON:MA_0002827-FMA_12787 def: "A lymph node that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "abdomen lymph node" EXACT [OBOL:automatic] synonym: "lymph node of abdomen" EXACT [] xref: FMA:12787 xref: MA:0002827 xref: SCTID:245342005 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002508 name: celiac lymph node namespace: uberon alt_id: UBERON:MA_0002828-FMA_12792 def: "The visceral glands are associated with the branches of the celiac, superior and inferior mesenteric arteries. Those related to the branches of the celiac artery (the celiac lymph nodes) form three sets, gastric, hepatic, and pancreaticolienal. gastric lymph nodes hepatic lymph nodes splenic lymph nodes [WP,unvetted]." [Wikipedia:Celiac_lymph_node] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "celiac node" EXACT [] synonym: "coeliac node" EXACT [] synonym: "nodus lymphaticus coeliacus" EXACT [] synonym: "terminal ventral aortic node" EXACT [] xref: FMA:12792 xref: MA:0002828 xref: SCTID:245343000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray613.png/200px-Gray613.png xref: ncithesaurus:Celiac_Lymph_Node is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002509 name: mesenteric lymph node namespace: uberon alt_id: UBERON:MA_0002829-FMA_12795 def: "the lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [MP:0005232] synonym: "mesenteric node" EXACT [] synonym: "nodi lymphoidei mesenterici" RELATED [BTO:0000767] xref: BTO:0000767 xref: FMA:12795 xref: MA:0002829 xref: ncithesaurus:Mesenteric_Lymph_Node is_a: UBERON:0002507 ! abdominal lymph node is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0002510 name: anterior fontanel namespace: uberon alt_id: UBERON:MA_0002830-FMA_75439 def: "The anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]." [Wikipedia:Anterior_fontanelle] synonym: "anterior fontanelle" EXACT [FMA:75439] xref: EMAPA:19199 xref: FMA:75439 xref: MA:0002830 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png is_a: UBERON:0002221 ! fontanelle [Term] id: UBERON:0002511 name: trabecula carnea namespace: uberon alt_id: UBERON:MA_0002831-FMA_7269 def: "The trabeculae carneae (columnae carneae, or fleshy beams), are rounded or irregular muscular columns which project from the inner surface of the right and left ventricles of the heart.[1] They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only. They are of three kinds: * some are attached along their entire length on one side and merely form prominent ridges,* others are fixed at their extremities but free in the middle, * while a third set, the papillary muscles are continuous by their bases with the wall of the ventricle, while their apices give origin to the chordC& tendineC& which pass to be attached to the segments of both the mitral valve and the tricuspid valve. The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented[WP]." [Wikipedia:Trabeculae_carneae] comment: Note that WP states they are ventricular, but MP has classes for atrial ventricular carnea. synonym: "cardiac trabecula" RELATED [GO:0060347] synonym: "heart trabecula" RELATED [GO:0060347] synonym: "trabecula of heart" RELATED [] synonym: "ventricle trabecula carnea" EXACT [MA:0002831] synonym: "ventricular trabecula" RELATED [MA:0002831] xref: EMAPA:18626 xref: FMA:7269 xref: MA:0002831 is_a: UBERON:0000440 ! trabecula is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002100 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! trunk [Term] id: UBERON:0002512 name: corpus luteum namespace: uberon alt_id: UBERON:MA_0002834-FMA_18619 def: "The corpus luteum (Latin for 'yellow body') (plural corpora lutea) is a temporary endocrine structure in mammals, involved in production of progestogen, which is needed to maintain the endometrium. [WP,unvetted]." [Wikipedia:Corpus_luteum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "corpus luteum of ovary" EXACT [] synonym: "luteal gland" RELATED [BTO:0000292] xref: BTO:0000292 xref: EMAPA:29886 xref: FMA:18619 xref: GAID:369 xref: MA:0002834 xref: MESH:A.05.360.319.114.630.278 xref: SCTID:257943001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Folliclesinovary.jpg/200px-Folliclesinovary.jpg xref: ncithesaurus:Corpus_Luteum is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0002513 name: endochondral bone namespace: uberon alt_id: UBERON:MA_0002836-ZFA_0001591 def: "Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_bone] comment: note that some structures, e.g. in ZFA are both intramembrane and endochondral subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cartilaginous bone" RELATED [BTO:0002157] xref: AAO:0010776 xref: AEO:0000083 xref: BTO:0002157 xref: EHDAA2:0003083 xref: VAO:0000145 xref: XAO:0004018 xref: ZFA:0001591 is_a: UBERON:0001474 ! bone is_a: UBERON:0008911 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! chondral bone tissue [Term] id: UBERON:0002514 name: intramembranous bone namespace: uberon alt_id: UBERON:MA_0002837-ZFA_0001635 def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification] synonym: "membrane bone" RELATED [AEO:0000085] xref: AEO:0000085 xref: EHDAA2:0003085 xref: ZFA:0001635 is_a: UBERON:0001474 ! bone [Term] id: UBERON:0002515 name: periosteum namespace: uberon alt_id: UBERON:MA_0002838-FMA_24041 def: "Periosteum is a membrane that lines the outer surface of all bones, except at the joints of long bones. Endosteum lines the inner surface of all bones. Periosteum consists of dense irregular connective tissue. Periosteum is divided into an outer 'fibrous layer' and inner 'cambium layer' (or 'osteogenic layer'). The fibrous layer contains fibroblasts, while the cambium layer contains progenitor cells that develop into osteoblasts. These osteoblasts are responsible for increasing the width of a long bone and the overall size of the other bone types. After a bone fracture the progenitor cells develop into osteoblasts and chondroblasts, which are essential to the healing process. As opposed to osseous tissue, periosteum has nociceptors nerve endings, making it very sensitive to manipulation. It also provides nourishment by providing the blood supply. Periosteum is attached to bone by strong collagenous fibers called Sharpey's fibres, which extend to the outer circumferential and interstitial lamellae. It also provides an attachment for muscles and tendons. Periosteum that covers the outer surface of the bones of the skull is known as 'pericranium'. [WP,unvetted]." [Wikipedia:Periosteum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0001022 xref: FMA:24041 xref: GAID:925 xref: MA:0002838 xref: MESH:A.10.165.265.746 xref: SCTID:33840008 xref: galen:PeriOsteum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Bone_growth.png/200px-Bone_growth.png xref: ncithesaurus:Periosteum is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0002516 name: epiphyseal plate namespace: uberon alt_id: UBERON:MA_0002839-FMA_75427 def: "a hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line." [Wikipedia:Epiphyseal_plate] comment: editor note: consider splitting this class into the epiphyseal plates of long bones and vertebrae subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cartilago epiphysialis" RELATED [BTO:0000412] synonym: "epiphyseal cartilage" RELATED [] synonym: "epiphyseal disk" RELATED [BTO:0000412] synonym: "epiphyseal growth disk" RELATED [BTO:0000412] synonym: "epiphyseal growth plate" EXACT [] synonym: "epiphyseal growth plate cartilage" EXACT [] synonym: "epiphysial plate" EXACT [FMA:75427] synonym: "growth plate" RELATED [MA:0002839] synonym: "long bone epiphyseal plate" EXACT [MA:0002839] synonym: "physis" RELATED [BTO:0000412] xref: BTO:0000412 xref: EMAPA:25059 xref: EMAPA:25062 xref: EMAPA:25065 xref: EMAPA:25068 xref: EMAPA:25071 xref: FMA:75427 xref: GAID:191 xref: MA:0002839 xref: MESH:A.02.835.232.251.352 xref: SCTID:84349008 is_a: UBERON:0001994 ! hyaline cartilage relationship: part_of UBERON:0001438 ! metaphysis [Term] id: UBERON:0002517 name: basicranium namespace: uberon alt_id: UBERON:MA_0002840-FMA_52801 def: "The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof." [Wikipedia:Base_of_skull] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "base of skull" EXACT [] synonym: "basis cranii" EXACT [FMA:52801, FMA:TA] synonym: "cranial base" RELATED [MA:0002840] xref: FMA:52801 xref: MA:0002840 xref: MESH:A.01.456.830 xref: SCTID:181890004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png xref: ncithesaurus:Base_of_the_Skull is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002518 name: otolith organ namespace: uberon alt_id: UBERON:MA_0002841-ZFA_0000559 def: "saccule or utricle." [Wikipedia:Otolith_organ] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "otolith organs" RELATED [ZFA:0000559] xref: EFO:0003539 xref: GAID:883 xref: MA:0002841 xref: ZFA:0000559 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0002519 name: otolithic membrane namespace: uberon alt_id: UBERON:MA_0002842-FMA_75573 def: "a gelatinous membrane located in the vestibular apparatus of the inner ear, and plays an essential role in the brain's interpretation of equilibrium. Both the saccular macula and utricular macula are covered by an otolithic membrane. The membrane is composed of crystalline particles of calcium carbonate called otoliths. When the head is moved the otoliths shift, causing cilia in the nearby saccule and utricle to distort. This produces nerve signals which are sent to the brain, which then uses them to establish its sense of balance. The embedded crystals are very and dense and make the density of the otolithic membrane higher than that of the endolymph surrounding it. When the head accelerates along a line or tilts to change its orientation to gravity, the otolithic membrane shifts relative to the bone supporting the maculae. This shift bends the hair cells whose processes are embedded in the otolithic membrane.[WP]." [Wikipedia:Otolithic_membrane] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "membrana statoconiorum" EXACT [FMA:75573, FMA:TA] synonym: "otolith layer of statoconial membrane" EXACT [FMA:75573] xref: FMA:75573 xref: GAID:884 xref: MA:0002842 xref: MESH:A.09.246.631.909.625.125.680 xref: SCTID:362571006 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0002520 name: submandibular lymph node namespace: uberon alt_id: UBERON:MA_0002843-FMA_61224 def: "The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]." [Wikipedia:Submandibular_lymph_node] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "level ib neck node" EXACT [] synonym: "nodi lymphoidei submandibulares" RELATED [BTO:0000769] synonym: "submandibular node" EXACT [] xref: BTO:0000769 xref: FMA:61224 xref: MA:0002843 xref: SCTID:245319003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Illu_quiz_hn_03.jpg/200px-Illu_quiz_hn_03.jpg xref: ncithesaurus:Submandibular_Lymph_Node is_a: UBERON:0003968 ! peripheral lymph node [Term] id: UBERON:0002521 name: elastic tissue namespace: uberon alt_id: UBERON:MA_0002853-FMA_20113 def: "Elastic fibers (or yellow fibers) are bundles of proteins found in extracellular matrix of connective tissue and produced by fibroblasts and smooth muscle cells in arteries. These fibers can stretch up to 1.5 times their length, and snap back to their original length when relaxed. Elastic fibers include elastin, elaunin and oxytalan. Elastic tissue is classified as 'connective tissue proper'. The elastic fiber is formed from the elastic microfibril and amorphous elastin. The microfibril scaffolds and organizes the deposition of amorphous elastin. Amorphous elastin forms from monomers of soluble tropoelastin which is insolubilized and crosslinked into amorphous elastin by lysyl oxidase. Lysyl oxidase reacts with specific lysine residues and by oxidative deamination generates reactive aldehydes and allysine. These reactive aldehydes and allysines can react with lysine and other allysine residues to crosslink and form desmosine, isodesmosine, and a number of other polyfunctional crosslinks that join surrounding elastin molecules to build an elastin matrix and elastic fiber. These unique crosslinks are responsible for elastin's elasticity. [WP,unvetted]." [Wikipedia:Elastic_tissue] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "elastic connective tissue" EXACT [] synonym: "textus connectivus elasticus" EXACT [] xref: FMA:20113 xref: GAID:926 xref: MA:0002853 xref: MESH:A.10.165.400 xref: SCTID:27197004 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0002522 name: tunica media namespace: uberon alt_id: UBERON:MA_0002855-FMA_55590 def: "The tunica media (or just media) (middle coat) is the middle layer of an artery or vein. [WP,unvetted]." [Wikipedia:Tunica_media] comment: todo - check BTO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tunica media vasorum" RELATED [BTO:0002011] xref: BTO:0002011 xref: FMA:55590 xref: GAID:170 xref: MA:0002855 xref: MESH:A.02.633.570.491.800 xref: SCTID:61695000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg xref: ncithesaurus:Tunica_Media is_a: UBERON:0000064 ! organ part is_a: UBERON:0004797 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! blood vessel layer relationship: part_of UBERON:0000055 ! vessel [Term] id: UBERON:0002523 name: tunica intima namespace: uberon alt_id: UBERON:MA_0002861-FMA_55589 def: "The tunica intima (or just intima) is the innermost layer of an artery or vein. It is made up of one layer of endothelial cells and is supported by an internal elastic lamina. The endothelial cells are in direct contact with the blood flow. The inner coat (tunica intima) can be separated from the middle by a little maceration, or it may be stripped off in small pieces; but, on account of its friability, it cannot be separated as a complete membrane. It is a fine, transparent, colorless structure which is highly elastic, and, after death, is commonly corrugated into longitudinal wrinkles. The inner coat consists of: A layer of pavement endothelium, the cells of which are polygonal, oval, or fusiform, and have very distinct round or oval nuclei. This endothelium is brought into view most distinctly by staining with silver nitrate. A subendothelial layer, consisting of delicate connective tissue with branched cells lying in the interspaces of the tissue; in arteries of less than 2 mm. in diameter the subendothelial layer consists of a single stratum of stellate cells, and the connective tissue is only largely developed in vessels of a considerable size. An elastic or fenestrated layer, which consists of a membrane containing a net-work of elastic fibers, having principally a longitudinal direction, and in which, under the microscope, small elongated apertures or perforations may be seen, giving it a fenestrated appearance. It was therefore called by Henle the fenestrated membrane. This membrane forms the chief thickness of the inner coat, and can be separated into several layers, some of which present the appearance of a network of longitudinal elastic fibers, and others a more membranous character, marked by pale lines having a longitudinal direction. In minute arteries the fenestrated membrane is a very thin layer; but in the larger arteries, and especially in the aorta, it has a very considerable thickness. [WP,unvetted]." [Wikipedia:Tunica_intima] comment: todo - check BTO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tunica intima vasorum" RELATED [BTO:0002012] xref: BTO:0002012 xref: FMA:55589 xref: GAID:523 xref: MA:0002861 xref: MESH:A.07.231.330.800 xref: SCTID:8361002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg xref: ncithesaurus:Tunica_Intima is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0004797 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! blood vessel layer relationship: part_of UBERON:0001981 ! blood vessel disjoint_from: UBERON:0005738 ! swim bladder tunica interna [Term] id: UBERON:0002524 name: mediastinal lymph node namespace: uberon alt_id: UBERON:MA_0002877-FMA_12774 def: "A lymph node that is part of a mediastinum. Each consists of several lymph node groups, especially along the trachea (5 groups), along the esophagus and between the lung and the diaphragm. In the mediastinal lymph nodes arises lymphatic ducts, which draines the lymph to the left subclavian vein (to the venous angle in the confluence of the subclavian and deep jugular veins). The mediastinal lymph nodes along the esophagus are in tight connection with the abdominal lymph nodes along the esophagus and the stomach. That fact facilitates spreading of tumors cells through these lymphatics in cases of cancers of the stomach and particularly of the esophagus. Through the mediastinum, the main lymphatic drainage from the abdominal organs goes via the thoracic duct (ductus thoracicus), which drains majority of the lymph from the abdomen to the above mentioned left venous angle." [Obol:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] synonym: "mediastinal node" EXACT [] xref: EFO:0001670 xref: FMA:12774 xref: MA:0002877 xref: SCTID:181760002 xref: ncithesaurus:Mediastinal_Lymph_Node is_a: UBERON:0000029 ! lymph node is_a: UBERON:0007644 ! thoracic lymph node relationship: part_of UBERON:0003728 ! mediastinum [Term] id: UBERON:0002525 name: brachial lymph node namespace: uberon alt_id: UBERON:MA_0002878-FMA_44314 def: "the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [MP:0005231, Wikipedia:Brachial_lymph_nodes] xref: FMA:44314 xref: MA:0002878 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002526 name: lumbar lymph node namespace: uberon alt_id: UBERON:MA_0002879-FMA_84599 xref: FMA:84599 xref: MA:0002879 xref: SCTID:281412000 is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002527 name: pancreatic lymph node namespace: uberon alt_id: UBERON:MA_0002881-FMA_16626 def: "A lymph node that is part of a pancreas [Obol]." [OBOL:automatic] synonym: "lymph node of pancreas" EXACT [OBOL:automatic] synonym: "pancreas lymph node" EXACT [OBOL:automatic] synonym: "pancreatic node" EXACT [] synonym: "pyloric lymph node" RELATED [MA:0002881] xref: FMA:16626 xref: MA:0002881 xref: SCTID:276170003 xref: ncithesaurus:Pancreatic_Lymph_Node is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002528 name: sacral lymph node namespace: uberon alt_id: UBERON:MA_0002883-FMA_16655 synonym: "sacral node" EXACT [] xref: FMA:16655 xref: MA:0002883 xref: SCTID:279797001 xref: ncithesaurus:Sacral_Lymph_Node is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002529 name: limb segment namespace: uberon alt_id: UBERON:MA_0002889-FMA_9661 def: "A major subdivision of a limb. Examples: autopod, zeugopod, stylopod. Excludes the limb girdles." [UBERON:cjm] comment: note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z synonym: "free limb segment" EXACT [FMA:241863] synonym: "limb region" EXACT [] synonym: "region of limb" EXACT [] synonym: "segment of limb" EXACT [] synonym: "subdivision of limb" EXACT [] xref: FMA:241863 xref: MA:0002889 is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0002530 name: gland namespace: uberon alt_id: UBERON:MIAA_0000021 def: "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland] comment: none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Druese" RELATED [BTO:0000522] synonym: "glandula" RELATED [BTO:0000522] xref: AAO:0000212 xref: AEO:0000096 xref: BTO:0000522 xref: EFO:0000797 xref: EHDAA2:0003096 xref: EHDAA:2161 xref: EHDAA:2181 xref: EHDAA:2967 xref: EHDAA:4475 xref: EHDAA:6522 xref: EMAPA:18425 xref: FMA:86294 xref: HAO:0000375 xref: MAT:0000021 xref: MIAA:0000021 xref: OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA xref: SCTID:134358001 xref: galen:Gland xref: ncithesaurus:Gland is_a: UBERON:0000062 ! organ [Term] id: UBERON:0002531 name: fin bud namespace: uberon alt_id: UBERON:MIAA_0000062-ZFA_0001383 comment: This class was created automatically from a combination of ontologies xref: EFO:0003468 xref: MAT:0000062 xref: MIAA:0000062 xref: TAO:0001383 xref: ZFA:0001383 is_a: UBERON:0004357 ! limb/fin bud [Term] id: UBERON:0002532 name: epiblast namespace: uberon alt_id: UBERON:MIAA_0000067-ZFA_0000018 def: "In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]" [Wikipedia:Epiblast, ZFIN:curator] comment: MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. In HOG, epiblast is part of primitive streak/blastpore, which is inconsistent with the MP definition of primitive streak as a ridge of the epiblast. Note that these terms, epiblast and hypoblast, are also used to describe layers of the avian embryonic blastoderm, but the layers so-named seem to be altogether different in these two kinds of vertebrate embryos(CVS). Consider obsoleting this as a grouping class subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "blastocyst" RELATED [] synonym: "ectoblast" RELATED [MP:0003886] synonym: "primitive ectoderm" RELATED [VHOG:0000243] xref: BTO:0004593 xref: MAT:0000067 xref: MIAA:0000067 xref: VHOG:0000243 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0002533 name: tail bud namespace: uberon alt_id: UBERON:MIAA_0000070-XAO_0000107-ZFA_0000077 def: "The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node." [BTO:0001445] comment: Editor notes: See notes from RCN:2012 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "end bud" RELATED [BTO:0001445] synonym: "tail bud mesenchyme " RELATED [ZFA:0000077] synonym: "tailbud" EXACT [] xref: AAO:0011104 xref: BTO:0001445 xref: EFO:0002748 xref: EHDAA2:0001976 xref: EHDAA:1595 xref: EMAPA:16580 xref: MAT:0000070 xref: MIAA:0000070 xref: TAO:0000077 xref: VHOG:0000201 xref: XAO:0000107 xref: ZFA:0000077 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: develops_from UBERON:0004879 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! marginal zone of embryo relationship: part_of UBERON:0006071 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! caudal region [Term] id: UBERON:0002534 name: pectoral/pelvic fin namespace: uberon alt_id: UBERON:MIAA_0000087-XAO_0000002-ZFA_0000108 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms is_a: UBERON:0004708 ! limb/fin is_a: UBERON:0008897 ! fin [Term] id: UBERON:0002535 name: gill namespace: uberon alt_id: UBERON:MIAA_0000134-XAO_0000120-ZFA_0000354 def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [Wikipedia:Gill] comment: this term potentially applicable across multiple metazoa, in the future we may create more specific classes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "branchia" RELATED [BTO:0000518] synonym: "gills" RELATED [] xref: AAO:0010171 xref: BTO:0000518 xref: EFO:0000933 xref: GAID:1218 xref: MAT:0000134 xref: MESH:A.13.421 xref: MIAA:0000134 xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA xref: TAO:0000354 xref: VHOG:0001214 xref: XAO:0000120 xref: ZFA:0000354 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0002536 name: arthropod sensillum namespace: uberon alt_id: UBERON:MIAA_0000163-WBbt_0006929 def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, Wikipedia:Sensillum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] xref: BTO:0001237 xref: EFO:0000939 xref: FBbt:00007152 xref: HAO:0000933 xref: MAT:0000163 xref: MIAA:0000163 xref: TGMA:0000540 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002537 name: hermaphrodite gonad namespace: uberon alt_id: UBERON:MIAA_0000165-WBbt_0005178 def: "organ in hermaphrodite animal that produces both ova and sperm." [WB:rynl] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hermaphrodite genitalia" EXACT [GO:0040035] synonym: "ovotestis" RELATED [BTO:0000981] xref: BTO:0000981 xref: EFO:0000971 xref: MAT:0000165 xref: MIAA:0000165 xref: WBbt:0005178 is_a: UBERON:0000991 ! gonad [Term] id: UBERON:0002538 name: hatching gland namespace: uberon alt_id: UBERON:MIAA_0000180-XAO_0000034-ZFA_0000026 def: "The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "frontal gland" RELATED [] synonym: "hgg" RELATED [] xref: AAO:0011050 xref: BTO:0000558 xref: EFO:0000863 xref: MAT:0000180 xref: MIAA:0000180 xref: TAO:0000026 xref: VHOG:0000078 xref: XAO:0000034 xref: ZFA:0000026 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0002539 name: pharyngeal arch namespace: uberon alt_id: UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306 def: "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch] comment: Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "branchial arch" NARROW [BTO:0001785, MP:0002884] synonym: "pharyngeal arches" EXACT PLURAL [] synonym: "visceral arch" RELATED [] xref: AAO:0010359 xref: BTO:0001785 xref: EFO:0000959 xref: EHDAA:571 xref: EMAPA:16117 xref: GAID:1292 xref: MAT:0000242 xref: MESH:A.16.254.160 xref: MIAA:0000242 xref: SCTID:308766004 xref: TAO:0001306 xref: VAO:0000149 xref: VHOG:0000155 xref: XAO:0000096 xref: ZFA:0001306 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png xref: ncithesaurus:Pharyngeal_Arch is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0008814 ! pharyngeal system relationship: part_of UBERON:0008816 ! embryonic head [Term] id: UBERON:0002540 name: lateral line system namespace: uberon alt_id: UBERON:MIAA_0000249-XAO_0000095-ZFA_0000034 def: "a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes." [ISBN:0471209627, ISBN:0815318960, Wikipedia:Lateral_line_system] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral line stitches" RELATED [] synonym: "lateral-line organs" RELATED [] synonym: "ll" RELATED [] xref: AAO:0000269 xref: AAO:0000975 xref: EFO:0000941 xref: MAT:0000249 xref: MIAA:0000249 xref: TAO:0000034 xref: VHOG:0001243 xref: XAO:0000095 xref: ZFA:0000034 is_a: UBERON:0001032 ! sensory system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0002541 name: germ ring namespace: uberon alt_id: UBERON:MIAA_0000255-ZFA_0000111 def: "The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA]" [http://www.fishbase.org/glossary/Glossary.php?q=germ%20ring] comment: todo - check timing of appearance and disappearance - check relationship with primitive streak. he blastopore lips in amphibians appear to have the equivalent function of the germ ring in zebrafish (ES) subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. xref: AAO:0000211 xref: EFO:0003427 xref: MAT:0000255 xref: MIAA:0000255 xref: TAO:0000111 xref: ZFA:0000111 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004734 ! gastrula relationship: develops_from UBERON:0004879 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! marginal zone of embryo property_value: "dubious_for_taxon" NCBITaxon:40674 [Term] id: UBERON:0002542 name: scale namespace: uberon alt_id: UBERON:MIAA_0000257-ZFA_0000277 def: "A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function." [Wikipedia:Scale_(zoology)] subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "scales" RELATED [] xref: BTO:0005055 xref: EFO:0000960 xref: HAO:0000907 xref: MAT:0000257 xref: MIAA:0000257 xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA xref: TAO:0000277 xref: VAO:0000048 xref: ZFA:0000277 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002199 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! integument [Term] id: UBERON:0002543 name: median fin skeleton namespace: uberon alt_id: UBERON:MIAA_0000277-ZFA_0001123 def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:wd] comment: This class was created automatically from a combination of ontologies synonym: "axial fin skeleton" EXACT [TAO:0001123] synonym: "unpaired fin skeleton" EXACT [ZFA:0001123] xref: EFO:0000950 xref: MAT:0000277 xref: MIAA:0000277 xref: TAO:0001123 xref: ZFA:0001123 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0002544 name: digit namespace: uberon alt_id: UBERON:MIAA_0000285-XAO_0003035-XAO_0003036 def: "one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]." [Wikipedia:Digit_(anatomy)] comment: todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "limb digit" EXACT [MA:0000690] xref: EFO:0000881 xref: FMA:85518 xref: MA:0000690 xref: MAT:0000285 xref: MIAA:0000285 xref: OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA xref: SCTID:361367007 xref: VHOG:0000944 xref: XAO:0003032 xref: galen:Digit xref: ncithesaurus:Digit is_a: UBERON:0005881 ! limb outgrowth relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0002545 name: body ganglion namespace: uberon alt_id: UBERON:MIAA_0000344-WBbt_0005332 is_obsolete: true synonym: "trunk ganglion" RELATED [] xref: EFO:0000901 xref: MAT:0000344 xref: MIAA:0000344 xref: WBbt:0005332 [Term] id: UBERON:0002546 name: cranial placode namespace: uberon alt_id: UBERON:MIAA_0000369-XAO_0000305 def: "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [UBERON:cjm, http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4] comment: Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831]. synonym: "placode" BROAD [Wikipedia:Placode] xref: AAO:0010466 xref: MAT:0000369 xref: MIAA:0000369 xref: XAO:0000305 is_a: UBERON:0005085 ! ectodermal placode relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0002547 name: tadpole namespace: uberon alt_id: UBERON:MIAA_0000370-MIAA_0000400-XAO_1000008 def: "A an organism at the larval stage" [UBERON:cjm] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "tadpole stage" RELATED [] xref: BTO:0001347 xref: MAT:0000370 xref: MIAA:0000370 is_a: UBERON:0002548 ! larva [Term] id: UBERON:0002548 name: larva namespace: uberon alt_id: UBERON:MIAA_0000400-FBbt_00001727 def: "a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva] comment: This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ammocoete" NARROW [Wikipedia:Larva] synonym: "bipinnaria" NARROW [Wikipedia:Larva] synonym: "caterpillar" NARROW [Wikipedia:Larva] synonym: "glochidium" NARROW [Wikipedia:Larva] synonym: "grub" NARROW [Wikipedia:Larva] synonym: "leptocephalus" NARROW [Wikipedia:Larva] synonym: "maggot" NARROW [Wikipedia:Larva] synonym: "naiad" NARROW [Wikipedia:Larva] synonym: "naupilus" NARROW [Wikipedia:Larva] synonym: "nymph" NARROW [Wikipedia:Larva] synonym: "planula" NARROW [Wikipedia:Larva] synonym: "tadpole" NARROW [Wikipedia:Larva] synonym: "trochophore" NARROW [Wikipedia:Larva] synonym: "veliger" NARROW [Wikipedia:Larva] synonym: "wriggler" NARROW [Wikipedia:Larva] synonym: "zoea" NARROW [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000707 xref: FBbt:00001727 xref: HAO:0000459 xref: MIAA:0000400 xref: OpenCyc:Mx4rwQCBvZwpEbGdrcN5Y29ycA is_a: UBERON:0000468 ! multi-cellular organism relationship: develops_from UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo [Term] id: UBERON:0002549 name: ventral trigeminal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1001-FMA_72506 def: "The ventral trigeminothalamic tract serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons . [WP,unvetted]." [Wikipedia:Ventral_trigeminal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506] synonym: "tractus trigeminothalamicus anterior" EXACT [FMA:72506, FMA:TA] synonym: "trigeminal lemniscus-2" EXACT [FMA:72506] synonym: "ventral crossed tract" EXACT [FMA:72506] synonym: "ventral secondary ascending tract of v" EXACT [] synonym: "ventral trigeminal pathway" EXACT [FMA:72506] synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506] xref: FMA:72506 xref: NIF_GrossAnatomy:birnlex_1001 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002550 name: anterior hypothalamic region namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1005-FMA_62027 synonym: "chiasmal zone" EXACT [FMA:62027] xref: FMA:62027 xref: NIF_GrossAnatomy:birnlex_1005 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002551 name: interstitial nucleus of cajal namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1008-FMA_72432 synonym: "interstitial nucleus" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus (crosby)" EXACT [] synonym: "nucleus interstitialis" EXACT [FMA:72432, FMA:TA] xref: ABA:INC xref: BM:MB-ICA xref: FMA:72432 xref: NIF_GrossAnatomy:birnlex_1008 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0002044 [Term] id: UBERON:0002552 name: vestibulocerebellar tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1009-FMA_72508 def: "The vestibulocerebellar tract is a tract in the pontine tegmentum which connects the vestibular nerve and the cerebellar cortex. [WP,unvetted]." [Wikipedia:Vestibulocerebellar_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "vestibulocerebellar fibers" EXACT [FMA:72508] xref: FMA:72508 xref: NIF_GrossAnatomy:birnlex_1009 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0002553 name: anatomical cavity namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552 def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552] synonym: "cavity" EXACT [] xref: EHDAA:2329 xref: EHDAA:2337 xref: EHDAA:2347 xref: EHDAA:293 xref: EHDAA:4741 xref: EHDAA:48 xref: EHDAA:638 xref: EHDAA:644 xref: EMAPA:16054 xref: FMA:67552 xref: NIF_GrossAnatomy:birnlex_1011 xref: galen:Cavity is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002554 name: regional part of superior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1014-FMA_85592 subset: inherited_grouping_class ! A grouping class that originates in two or more separate anatomical ontologies. Includes 'region of X' type terms xref: FMA:85592 xref: NIF_GrossAnatomy:birnlex_1014 is_a: UBERON:0002966 ! regional part of midbrain tectum [Term] id: UBERON:0002555 name: intermediate hypothalamic region namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1015-FMA_62028 synonym: "area hypothalamica intermedia" EXACT [FMA:62028, FMA:TA] synonym: "intermediate hypothalamic area" EXACT [FMA:62028] xref: FMA:62028 xref: NIF_GrossAnatomy:birnlex_1015 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002556 name: corticotectal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1016-FMA_72419 synonym: "corticotectal fibers" EXACT [FMA:72419] synonym: "corticotectal fibres" EXACT [FMA:72419] synonym: "fibrae corticotectales" EXACT [FMA:72419, FMA:TA] xref: BM:CTT xref: FMA:72419 xref: NIF_GrossAnatomy:birnlex_1016 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002557 name: linear nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1018-FMA_72436 xref: FMA:72436 xref: NIF_GrossAnatomy:birnlex_1018 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002558 name: organ cavity namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1019-FMA_12237 synonym: "cavity of organ" EXACT [FMA:12237] xref: FMA:12237 xref: NIF_GrossAnatomy:birnlex_1019 xref: SCTID:362606005 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0002559 name: medullary reticular formation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1020-FMA_72241 def: "The reticular formation is a series of brain nuclei located in the medulla oblongata" [GO:0021723] comment: note that ZFA:0000421 is part of the the medulla oblongata, so it is placed here, rather than with the generic term subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bulb reticular formation" EXACT [OBOL:automatic] synonym: "bulbar reticular formation" EXACT [FMA:72241] synonym: "medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus" EXACT [MA:0001049] synonym: "metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "reticular formation" BROAD [ZFA:0000421] synonym: "reticular formation of bulb" EXACT [OBOL:automatic] synonym: "reticular formation of medulla" EXACT [FMA:72241] synonym: "reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation" EXACT [GO:0021723] xref: ABA:MDRN xref: BM:Me-MeRF xref: FMA:72241 xref: GAID:588 xref: MA:0001049 xref: NIF_GrossAnatomy:birnlex_1020 xref: SCTID:369059009 xref: TAO:0000421 xref: ZFA:0000421 is_a: UBERON:0002275 ! reticular formation is_a: UBERON:0006331 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! brainstem nucleus relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002560 name: temporal operculum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1025-FMA_74891 synonym: "facies supratemporalis" EXACT [FMA:74891] xref: FMA:74891 xref: NIF_GrossAnatomy:birnlex_1025 xref: SCTID:369222001 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010262 ! operculum of brain [Term] id: UBERON:0002561 name: neuraxis cavity namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1029-FMA_75007 synonym: "cavity of neuraxis" EXACT [FMA:75007] synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007] synonym: "neuraxis cavity" EXACT [FMA:75007] xref: FMA:75007 xref: NIF_GrossAnatomy:birnlex_1029 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002562 name: superior frontal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1030-FMA_83755 def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sulcus f1" EXACT [FMA:83755] synonym: "sulcus frontalis primus" EXACT [NIF_GrossAnatomy:birnlex_1030] synonym: "sulcus frontalis superior" EXACT [NIF_GrossAnatomy:birnlex_1030] synonym: "superior frontal fissure" EXACT [FMA:83755] xref: FMA:83755 xref: NIF_GrossAnatomy:birnlex_1030 xref: SCTID:279342009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray726_Superior_frontal_sulcus.svg/200px-Gray726_Superior_frontal_sulcus.svg.png xref: ncithesaurus:Superior_Frontal_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002563 name: central nucleus of inferior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1035-FMA_72413 synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413] synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413] synonym: "nucleus of inferior colliculus (crosby)" EXACT [] xref: ABA:ICc xref: BM:MB-Tec-ICC xref: FMA:72413 xref: NIF_GrossAnatomy:birnlex_1035 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! regional part of inferior colliculus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001946 ! inferior colliculus property_value: "spatially_disjoint_from" UBERON:0002571 [Term] id: UBERON:0002564 name: lateral orbital gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1036-FMA_62418 xref: FMA:62418 xref: NIF_GrossAnatomy:birnlex_1036 xref: SCTID:279195001 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002565 name: olivary pretectal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1037-FMA_72405 def: "The pretectum, also known as the pretectal area, is a region of neurons found between the thalamus and midbrain. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [Wikipedia:Olivary_pretectal_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior pretectal nucleus" EXACT [FMA:72405] synonym: "nucleus pretectalis anterior" EXACT [FMA:72405, FMA:TA] synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405] synonym: "pretectal olivary nucleus" EXACT [FMA:72405] xref: ABA:OP xref: BM:MB-Tec-OPT xref: FMA:72405 xref: NIF_GrossAnatomy:birnlex_1037 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! regional part of pretectal region is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region property_value: "spatially_disjoint_from" UBERON:0002711 property_value: "spatially_disjoint_from" UBERON:0002996 property_value: "spatially_disjoint_from" UBERON:0006848 [Term] id: UBERON:0002566 name: superior precentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1038-FMA_83763 synonym: "precentral dimple" EXACT [FMA:83763] synonym: "sulcus praecentralis superior" EXACT [NIF_GrossAnatomy:birnlex_1038] synonym: "sulcus precentralis superior" EXACT [NIF_GrossAnatomy:birnlex_1038] synonym: "superior part of precentral fissure" EXACT [FMA:83763] xref: FMA:83763 xref: NIF_GrossAnatomy:birnlex_1038 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002567 name: basal part of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1043-FMA_72244 synonym: "basal portion of pons" EXACT [FMA:72244] synonym: "base of pons" EXACT [FMA:72244] synonym: "basilar part of pons" EXACT [FMA:72244] synonym: "pars basilaris pontis" EXACT [FMA:72244, FMA:TA] synonym: "pons proper" EXACT [FMA:72244] synonym: "ventral portion of pons" EXACT [FMA:72244] xref: FMA:72244 xref: NIF_GrossAnatomy:birnlex_1043 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002568 name: amiculum of dentate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1044-FMA_72546 synonym: "dentate nuclear amiculum" EXACT [FMA:72546] xref: FMA:72546 xref: NIF_GrossAnatomy:birnlex_1044 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002569 name: transverse temporal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1045-FMA_83782 xref: FMA:83782 xref: NIF_GrossAnatomy:birnlex_1045 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002570 name: medial orbital gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1046-FMA_62419 xref: FMA:62419 xref: NIF_GrossAnatomy:birnlex_1046 xref: SCTID:279194002 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002571 name: external nucleus of inferior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1047-FMA_72412 xref: ABA:ICe xref: BM:MB-Tec-ICX xref: FMA:72412 xref: NIF_GrossAnatomy:birnlex_1047 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! regional part of inferior colliculus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001946 ! inferior colliculus property_value: "spatially_disjoint_from" UBERON:0002563 [Term] id: UBERON:0002572 name: principal pretectal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1048-FMA_72402 xref: FMA:72402 xref: NIF_GrossAnatomy:birnlex_1048 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! regional part of pretectal region is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002573 name: pontine reticular formation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1050-FMA_68876 def: "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]." [Wikipedia:Pontine_reticular_formation] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pons of varolius reticular formation" EXACT [OBOL:automatic] synonym: "pons reticular formation" EXACT [OBOL:automatic] synonym: "pontine reticular nucleus" EXACT [ABA:PRNr] synonym: "reticular formation of pons" EXACT [FMA:68876] synonym: "reticular formation of pons of varolius" EXACT [OBOL:automatic] xref: ABA:PRNr xref: BM:Pons-PRF xref: FMA:68876 xref: NIF_GrossAnatomy:birnlex_1050 xref: SCTID:362403007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png is_a: UBERON:0002275 ! reticular formation relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0002574 name: regional part of inferior olivary complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1052-FMA_71259 def: "A regional part of brain that is part of a inferior olivary complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior olive" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olive" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olivary complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olive" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olivary complex" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olive" EXACT [OBOL:automatic] synonym: "inferior olivary complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary complex biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olivary complex brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olivary complex neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olivary complex regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olivary complex segment" EXACT [FMA:71259] synonym: "inferior olivary complex segment of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus segment of brain" EXACT [OBOL:automatic] synonym: "inferior olive anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olive biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olive brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olive brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olive neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olive regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olive segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olivary complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olive" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olive" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olive" EXACT [OBOL:automatic] synonym: "segment of inferior olivary complex" EXACT [NIF_GrossAnatomy:birnlex_1052] xref: FMA:71259 xref: NIF_GrossAnatomy:birnlex_1052 is_a: UBERON:0002678 ! regional part of medulla oblongata [Term] id: UBERON:0002575 name: posterior orbital gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1054-FMA_80184 xref: FMA:80184 xref: NIF_GrossAnatomy:birnlex_1054 xref: SCTID:279197009 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002576 name: temporal pole namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1055-FMA_74890 def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Temporal_pole] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "polus temporalis" EXACT [NeuroNames:126] xref: FMA:74890 xref: NIF_GrossAnatomy:birnlex_1055 xref: SCTID:314155002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG is_a: UBERON:0009899 ! pole of cerebral hemisphere [Term] id: UBERON:0002577 name: pericentral nucleus of inferior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1056-FMA_72411 synonym: "cortex of inferior colliculus" EXACT [FMA:72411] xref: BM:MB-Tec-ICP xref: FMA:72411 xref: NIF_GrossAnatomy:birnlex_1056 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! regional part of inferior colliculus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002578 name: sublentiform nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1057-FMA_72404 xref: FMA:72404 xref: NIF_GrossAnatomy:birnlex_1057 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! regional part of pretectal region is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002579 name: regional part of medullary reticular formation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1060-FMA_73730 def: "A regional part of brain that is part of a medullary reticular formation [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "biological structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of bulb reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medullary reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of bulb reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medullary reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "brain biological structure of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "bulb reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "bulb reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "bulb reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "bulb reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "bulb reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "bulb reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "bulb reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "bulbar reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "bulbar reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "bulbar reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "medullary reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "medullary reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "medullary reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation segment" EXACT [FMA:73730] synonym: "medullary reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus biological structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus brain anatomical structure" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus brain biological structure" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus neuraxis segment" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus regional part of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus segment of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of bulb reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medullary reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "neuraxis segment of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "neuraxis segment of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "regional part of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "reticular formation of bulb anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of bulb biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of bulb brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of bulb brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of bulb neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of bulb regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of bulb segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon segment of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "segment of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "segment of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "segment of medullary reticular formation" EXACT [NIF_GrossAnatomy:birnlex_1060] xref: FMA:73730 xref: NIF_GrossAnatomy:birnlex_1060 is_a: UBERON:0002678 ! regional part of medulla oblongata [Term] id: UBERON:0002580 name: brachium of superior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1065-FMA_72417 def: "The brachium of superior colliculus (or superior brachium) extends lateralward from the superior colliculus, and, passing between the pulvinar and medial geniculate body, is partly continued into an eminence called the lateral geniculate body, and partly into the optic tract. [WP,unvetted]." [Wikipedia:Brachium_of_superior_colliculus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "superior brachium" EXACT [FMA:72417] synonym: "superior collicular brachium" EXACT [FMA:72417] synonym: "superior colliculus brachium" EXACT [FMA:72417] synonym: "superior quadrigeminal brachium" EXACT [FMA:72417] xref: BM:MB-BSC xref: FMA:72417 xref: NIF_GrossAnatomy:birnlex_1065 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG is_a: UBERON:0002316 ! white matter is_a: UBERON:0002554 ! regional part of superior colliculus is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002581 name: postcentral gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1070-FMA_61896 def: "The lateral postcentral gyrus is a prominent structure in the parietal lobe of the human brain and an important landmark. It was initially defined from surface stimulation studies of Penfield, and parallel surface potential studies of Bard, Woolsey, and Marshall. Although initially defined to be roughly the same as Brodmann areas 3, 1 and 2, more recent work by Kaas has suggested that for homogeny with other sensory fields only area 3 should be referred to as 'primary somatosensory cortex', as it received the bulk of the thalamocortical projection from the sensory input fields. [WP,unvetted]." [Wikipedia:Postcentral_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "postcentral convolution" EXACT [FMA:61896] synonym: "posterior central gyrus" EXACT [FMA:61896] synonym: "postrolandic gyrus" EXACT [FMA:61896] xref: BTO:0004354 xref: EFO:0001383 xref: FMA:61896 xref: NIF_GrossAnatomy:birnlex_1070 xref: SCTID:279167001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Postcentral_gyrus.png/200px-Postcentral_gyrus.png xref: ncithesaurus:Postcentral_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002582 name: anterior calcarine sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1072-FMA_83750 synonym: "anterior calcarine fissure" EXACT [FMA:83750] synonym: "sulcus calcarinus anterior" EXACT [NIF_GrossAnatomy:birnlex_1072] xref: FMA:83750 xref: NIF_GrossAnatomy:birnlex_1072 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002583 name: commissure of superior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1073-FMA_72418 def: "A commissure that is part of a superior colliculus [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior colliculus commissure" EXACT [OBOL:automatic] synonym: "anterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] synonym: "commissure of anterior colliculus" EXACT [OBOL:automatic] synonym: "commissure of anterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "commissure of cranial colliculus" EXACT [OBOL:automatic] synonym: "commissure of optic tectum" EXACT [OBOL:automatic] synonym: "commissure of superior colliculi" EXACT [FMA:72418] synonym: "cranial colliculus commissure" EXACT [OBOL:automatic] synonym: "intertectal commissure" EXACT SENSU [ZFA:0000684] synonym: "optic tectum commissure" EXACT [OBOL:automatic] synonym: "superior colliculus commissure" EXACT [FMA:72418] xref: BM:MB-Tec-SC-SCX xref: FMA:72418 xref: NIF_GrossAnatomy:birnlex_1073 xref: SCTID:369258008 xref: ZFA:0000684 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002554 ! regional part of superior colliculus is_a: UBERON:0005970 ! brain commissure is_a: UBERON:0002316 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! white matter relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002584 name: regional part of vestibular nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1080-FMA_71267 def: "A regional part of brain that is part of a vestibular nuclear complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nuclei" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nucleus" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nuclei" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nucleus" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nuclei" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nucleus" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "segment of vestibular nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1080] synonym: "vestibular nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex segment" EXACT [FMA:71267] synonym: "vestibular nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nuclei regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei segment of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nucleus brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nucleus neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nucleus regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus segment of brain" EXACT [OBOL:automatic] xref: FMA:71267 xref: NIF_GrossAnatomy:birnlex_1080 is_a: UBERON:0002678 ! regional part of medulla oblongata [Term] id: UBERON:0002585 name: central tegmental tract of midbrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1081-FMA_72456 xref: FMA:72456 xref: NIF_GrossAnatomy:birnlex_1081 xref: SCTID:369243000 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002586 name: calcarine sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1086-FMA_83749 def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [Wikipedia:Calcarine_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "calcarine fissure" EXACT [FMA:83749] synonym: "sulcus calcarinus" EXACT [NIF_GrossAnatomy:birnlex_1086] xref: BM:Tel-Cx-CAS xref: FMA:83749 xref: NIF_GrossAnatomy:birnlex_1086 xref: SCTID:279355005 xref: ncithesaurus:Calcarine_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002587 name: nucleus subceruleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1088-FMA_72479 synonym: "nucleus subcaeruleus" EXACT [FMA:72479, FMA:TA] synonym: "subcaerulean nucleus" EXACT [FMA:72479] synonym: "subceruleus nucleus" EXACT [] synonym: "subcoeruleus nucleus" EXACT [] xref: ABA:SLC xref: FMA:72479 xref: NIF_GrossAnatomy:birnlex_1088 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0002047 property_value: "spatially_disjoint_from" UBERON:0002148 property_value: "spatially_disjoint_from" UBERON:0002267 property_value: "spatially_disjoint_from" UBERON:0003004 [Term] id: UBERON:0002588 name: decussation of superior cerebellar peduncle namespace: uberon alt_id: UBERON:0003032 alt_id: UBERON:NIF_GrossAnatomy_birnlex_1089-FMA_72455 def: "Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1089, Wikipedia:Decussation_of_superior_cerebellar_peduncle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Wernekink's decussation" EXACT [FMA:72455] synonym: "decussatio pedunculorum cerebellarium superiorum" EXACT [FMA:72455, FMA:TA] synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455] synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455] synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455] xref: BM:BCX xref: FMA:72455 xref: NIF_GrossAnatomy:birnlex_1089 xref: SCTID:369252009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png is_a: UBERON:0003544 ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0002150 ! superior cerebellar peduncle [Term] id: UBERON:0002589 name: lateral corticospinal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1095-FMA_72635 def: "The lateral corticospinal tract (also called the crossed pyramidal tract or lateral cerebrospinal fasciculus) is the largest part of the corticospinal tract. It extends throughout the entire length of the medulla spinalis, and on transverse section appears as an oval area in front of the posterior column and medial to the posterior spinocerebellar tract. Its fibres arise from cells in the motor area of the cerebral hemisphere of the opposite side. They pass downward in company with those of the anterior corticospinal tract through the same side of the brain as that from which they originate, but they cross to the opposite side in the medulla oblongata and descend in the lateral funiculus of the medulla spinalis. The lateral corticospinal tract controls movement of contralateral limbs. Control of more central axial and girdle muscles comes from the anterior corticospinal tract. [WP,unvetted]." [Wikipedia:Lateral_corticospinal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral pyramidal tract" EXACT [FMA:72635] xref: FMA:72635 xref: NIF_GrossAnatomy:birnlex_1095 xref: SCTID:369091005 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002590 name: prepyriform area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1097-FMA_62484 synonym: "(pre-)piriform cortex" EXACT [NIF_GrossAnatomy:birnlex_1097] synonym: "gyrus olfactorius lateralis" EXACT [FMA:62484, FMA:TA] synonym: "lateral olfactory gyrus" EXACT [FMA:62484] synonym: "piriform cortex (price)" EXACT [] synonym: "piriform olfactory cortex" EXACT [NIF_GrossAnatomy:birnlex_1097] synonym: "prepiriform cortex" EXACT [FMA:62484] synonym: "prepyriform cortex" EXACT [FMA:62484] synonym: "pyriform area" EXACT [NIF_GrossAnatomy:birnlex_1097] xref: ABA:PIR xref: BM:Tel-PRP xref: FMA:62484 xref: NIF_GrossAnatomy:birnlex_1097 xref: SCTID:369104008 is_a: UBERON:0000064 ! organ part property_value: "spatially_disjoint_from" UBERON:0002266 property_value: "spatially_disjoint_from" UBERON:0002893 property_value: "spatially_disjoint_from" UBERON:0004069 [Term] id: UBERON:0002591 name: oral part of spinal trigeminal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1100-FMA_235322 xref: ABA:SPVO xref: FMA:235322 xref: NIF_GrossAnatomy:birnlex_1100 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve property_value: "spatially_disjoint_from" UBERON:0002126 property_value: "spatially_disjoint_from" UBERON:0002162 property_value: "spatially_disjoint_from" UBERON:0002610 property_value: "spatially_disjoint_from" UBERON:0002864 property_value: "spatially_disjoint_from" UBERON:0002866 property_value: "spatially_disjoint_from" UBERON:0002873 property_value: "spatially_disjoint_from" UBERON:0007633 [Term] id: UBERON:0002592 name: juxtarestiform body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1101-FMA_72613 def: "The juxtarestiform body is a subdivision of the inferior cerebellar peduncle, which comprises both the juxtarestiform and restiform bodies. [WP,unvetted]." [Wikipedia:Juxtarestiform_body] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:72613 xref: NIF_GrossAnatomy:birnlex_1101 xref: SCTID:110687007 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002593 name: orbital operculum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1102-FMA_74887 xref: FMA:74887 xref: NIF_GrossAnatomy:birnlex_1102 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010262 ! operculum of brain [Term] id: UBERON:0002594 name: dentatothalamic tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1104-FMA_72462 def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [Wikipedia:Dentatothalamic_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dentatothalamic fibers" EXACT [FMA:72462] xref: FMA:72462 xref: NIF_GrossAnatomy:birnlex_1104 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002595 name: orbital sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1112-FMA_83770 synonym: "cruciate sulcus of campbell" EXACT [NIF_GrossAnatomy:birnlex_1112] synonym: "orbital sulci" EXACT [FMA:83770] synonym: "sulcus orbitalis" EXACT [NIF_GrossAnatomy:birnlex_1112] xref: BM:Tel-Cx-ORS xref: FMA:83770 xref: NIF_GrossAnatomy:birnlex_1112 xref: SCTID:314143008 xref: ncithesaurus:Orbital_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002596 name: ventral posterior nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1116-FMA_62187 def: "The ventral posterior nucleus is the somato-sensory relay nucleus in thalamus of the brain. [WP,unvetted]." [Wikipedia:Ventral_posterior_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus ventrales posteriores" EXACT [NIF_GrossAnatomy:birnlex_1116] synonym: "nucleus ventralis posterior" EXACT [NIF_GrossAnatomy:birnlex_1116] synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187] synonym: "ventrobasal complex" EXACT [FMA:62187] synonym: "ventrobasal nucleus" EXACT [FMA:62187] xref: BM:Die-Th-VPI xref: BTO:0004373 xref: BTO:0004374 xref: EV:0100209 xref: FMA:62187 xref: NIF_GrossAnatomy:birnlex_1116 xref: SCTID:279147005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002776 ! ventral nuclear group [Term] id: UBERON:0002597 name: principal sensory nucleus of trigeminal nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1120-FMA_54533 def: "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]." [GO:0021730, Wikipedia:Chief_sensory_nucleus] comment: GO has pontine nucleus as a child of trigeminal sensory nucleus, WP says this is a synonym, but we have a separate class for this - UBERON:0002151 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "chief sensory nucleus" EXACT [FMA:54533] synonym: "main sensory nucleus" EXACT [FMA:54533] synonym: "main sensory nucleus of cranial nerve v" EXACT [] synonym: "pontine nucleus" RELATED INCONSISTENT [GO:0021740, Wikipedia:Trigeminal_nuclei] synonym: "principal sensory nucleus" EXACT [] synonym: "principal sensory nucleus of trigeminal nerve" EXACT [FMA:54533] synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533] synonym: "principal trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533] synonym: "trigeminal V chief sensory nucleus" EXACT [MA:0002740] synonym: "trigeminal V principal sensory nucleus" EXACT [MA:0002740] synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533] xref: ABA:PSV xref: BM:VP xref: EHDAA2:0004628 xref: EV:0100274 xref: FMA:54533 xref: MA:0002740 xref: NIF_GrossAnatomy:birnlex_1120 xref: SCTID:369031008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve is_a: UBERON:0004132 ! trigeminal sensory nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum property_value: "spatially_disjoint_from" UBERON:0002128 property_value: "spatially_disjoint_from" UBERON:0006840 property_value: "spatially_disjoint_from" UBERON:0007634 [Term] id: UBERON:0002598 name: paracentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1121-FMA_83762 synonym: "sulcus subcentralis medialis" EXACT [NIF_GrossAnatomy:birnlex_1121] xref: FMA:83762 xref: NIF_GrossAnatomy:birnlex_1121 xref: SCTID:369228002 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002599 name: medial olfactory gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1127-FMA_74509 xref: FMA:74509 xref: NIF_GrossAnatomy:birnlex_1127 xref: SCTID:369103002 is_a: UBERON:0000200 ! gyrus disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon [Term] id: UBERON:0002600 name: limbic lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719 def: "The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fornicate gyrus" EXACT [FMA:72719] synonym: "grande lobe limbique of broca" EXACT [] synonym: "limbic lobe (carpenter)" EXACT [] xref: FMA:72719 xref: NIF_GrossAnatomy:birnlex_1128 xref: SCTID:279215006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Human_brain_inferior-medial_view_description.JPG/200px-Human_brain_inferior-medial_view_description.JPG is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0002601 name: fasciolar gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1129-FMA_61921 def: "a small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]." [BTO:0002497, http://www.biology-online.org/dictionary/Fasciolar_gyrus] comment: TODO - existing definitions, synonyms and relationships in existing AOs seem contradictory; to be resolved. We take the dentate gyrus relationship from BTO, and it is also implied by the FMA synonym. However, FMA says archiortex (embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus) and NIF says limbic lobe (which is more general than hippocampus). ABA xref made on basis of BTO related synonym synonym: "fasciola cinerea" RELATED [BTO:0002497] synonym: "gyrus fasciolaris" RELATED [BTO:0002497] synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921] xref: ABA:FC xref: BTO:0002497 xref: FMA:61921 xref: NIF_GrossAnatomy:birnlex_1129 xref: SCTID:279210001 is_a: UBERON:0000200 ! gyrus property_value: "spatially_disjoint_from" UBERON:0001885 property_value: "spatially_disjoint_from" UBERON:0001954 [Term] id: UBERON:0002602 name: emboliform nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1135-FMA_72538 def: "The emboliform nucleus lies immediately to the medial side of the nucleus dentatus, and partly covering its hilus. It is one among the four pairs of cerebellar nuclei, which are from lateral to medial: the dentate, interposed (emboliform and globose), and fastigial nuclei. These nuclei can be seen using the Weigert method staining. [WP,unvetted]." [Wikipedia:Emboliform_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior interposed nucleus" EXACT [FMA:72538] synonym: "anterior interpositus nucleus" EXACT [FMA:72538] synonym: "nucleus interpositus anterior" EXACT [FMA:72538, FMA:TA] xref: FMA:72538 xref: NIF_GrossAnatomy:birnlex_1135 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002603 name: paraterminal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1138-FMA_61919 def: "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]." [Wikipedia:Paraterminal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "precommissural hippocampus" EXACT [FMA:61919] synonym: "subcallosal gyrus" EXACT [FMA:61919] xref: FMA:61919 xref: NIF_GrossAnatomy:birnlex_1138 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png is_a: UBERON:0002665 ! supracallosal gyrus [Term] id: UBERON:0002604 name: ventral nucleus of lateral lemniscus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1140-FMA_72484 def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484] synonym: "nucleus anterior lemnisci lateralis" EXACT [FMA:72484, FMA:TA] synonym: "nucleus of the lateral lemniscus, ventral part" EXACT [ABA:NLLv] synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484] xref: ABA:NLLv xref: BM:LLV xref: FMA:72484 xref: NIF_GrossAnatomy:birnlex_1140 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0006840 ! nucleus of lateral lemniscus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0002605 name: precentral operculum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1141-FMA_74888 xref: FMA:74888 xref: NIF_GrossAnatomy:birnlex_1141 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010262 ! operculum of brain [Term] id: UBERON:0002606 name: neuropil namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1142-FMA_261269 def: "A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells of the central nervous system (MSH)[NIF]." [NIF_Subcellular:sao205380252, Wikipedia:Neuropil] comment: check re portion of neural tissue. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FBbt:00005139 xref: FMA:261269 xref: GAID:740 xref: MESH:A.08.637.500 xref: NIF_GrossAnatomy:birnlex_1142 xref: NIF_Subcellular:sao205380252 xref: SCTID:67146008 xref: ncithesaurus:Neuropil is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001017 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! central nervous system [Term] id: UBERON:0002607 name: superior rostral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1143-FMA_83766 synonym: "sulcus rostralis superior" EXACT [NIF_GrossAnatomy:birnlex_1143] xref: FMA:83766 xref: NIF_GrossAnatomy:birnlex_1143 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002608 name: caudal part of ventral lateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1144-FMA_62194 synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "nucleus dorsooralis (van buren)" EXACT [NIF_GrossAnatomy:birnlex_1144] synonym: "nucleus lateralis intermedius mediodorsalis situs dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1144] synonym: "nucleus ventralis lateralis, pars caudalis" EXACT [NIF_GrossAnatomy:birnlex_1144] synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194] synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194] xref: FMA:62194 xref: NIF_GrossAnatomy:birnlex_1144 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002609 name: spinothalamic tract of midbrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1150-FMA_72463 xref: FMA:72463 xref: NIF_GrossAnatomy:birnlex_1150 xref: SCTID:369090006 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002610 name: cochlear nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1151-FMA_72240 def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nuclei] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cochlear nuclei" EXACT [FMA:72240] xref: ABA:CN xref: BM:Me-Co xref: EV:0100260 xref: FMA:72240 xref: NIF_GrossAnatomy:birnlex_1151 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png xref: ncithesaurus:Cochlear_Nuclei is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002126 property_value: "spatially_disjoint_from" UBERON:0002162 property_value: "spatially_disjoint_from" UBERON:0002591 property_value: "spatially_disjoint_from" UBERON:0002864 property_value: "spatially_disjoint_from" UBERON:0002866 property_value: "spatially_disjoint_from" UBERON:0002873 property_value: "spatially_disjoint_from" UBERON:0007633 [Term] id: UBERON:0002611 name: node of ranvier namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1152-FMA_67368 def: "." [Wikipedia:Node_of_ranvier] is_obsolete: true comment: in GO subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ranvier node" EXACT [FMA:67368] synonym: "ranvier's node" EXACT [FMA:67368] xref: FMA:67368 xref: GAID:748 xref: GO:0033268 xref: NIF_GrossAnatomy:birnlex_1152 xref: ncithesaurus:Node_of_Ranvier [Term] id: UBERON:0002612 name: transverse orbital sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1155-FMA_83771 synonym: "sulcus orbitalis transversus" EXACT [NIF_GrossAnatomy:birnlex_1155] xref: FMA:83771 xref: NIF_GrossAnatomy:birnlex_1155 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002613 name: globose nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1158-FMA_72536 def: "The globose nucleus is one of the deep cerebellar nuclei. It is located medial to the emboliform nucleus and lateral to the fastigial nucleus. This nucleus contains primarily large and small multipolar neurons. The globose nucleus and emboliform nucleus are occasionally referred to collectively as the interposed nucleus. [WP,unvetted]." [Wikipedia:Globose_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus interpositus posterior" EXACT [FMA:72536, FMA:TA] synonym: "posterior interposed nucleus" EXACT [FMA:72536] synonym: "posterior interpositus nucleus" EXACT [FMA:72536] xref: FMA:72536 xref: NIF_GrossAnatomy:birnlex_1158 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002614 name: medial part of ventral lateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1159-FMA_62195 synonym: "nucleus ventralis lateralis thalami, pars medialis" EXACT [NIF_GrossAnatomy:birnlex_1159] synonym: "nucleus ventrooralis medialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1159] synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195] synonym: "ventral medial nucleus" EXACT [FMA:62195] synonym: "ventral medial nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1159] xref: ABA:VM xref: BM:Die-Th-VM xref: FMA:62195 xref: NIF_GrossAnatomy:birnlex_1159 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002615 name: ventral tegmental decussation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1163-FMA_72452 synonym: "anterior tegmental decussation" EXACT [FMA:72452] synonym: "decussatio tegmentalis anterior" EXACT [FMA:72452, FMA:TA] synonym: "decussation of forel" EXACT [] synonym: "ventral tegmental decussation of forel" EXACT [] xref: FMA:72452 xref: NIF_GrossAnatomy:birnlex_1163 xref: SCTID:369249001 is_a: UBERON:0003544 ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002616 name: regional part of brain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676 def: "An anatomical structure that is part of a brain [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain" EXACT [OBOL:automatic] synonym: "biological structure of brain" EXACT [OBOL:automatic] synonym: "brain anatomical structure" EXACT [OBOL:automatic] synonym: "brain biological structure" EXACT [OBOL:automatic] synonym: "brain part" EXACT [] synonym: "neuraxis segment" EXACT [FMA:55676] synonym: "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167] xref: FMA:55676 xref: NIF_GrossAnatomy:birnlex_1167 xref: SCTID:384763002 xref: ncithesaurus:Brain_Part is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0002617 name: pars postrema of ventral lateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1170-FMA_62196 synonym: "nucleus dorsointermedius externus magnocellularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1170] synonym: "nucleus lateralis intermedius mediodorsalis situs postremus" EXACT [NIF_GrossAnatomy:birnlex_1170] synonym: "nucleus ventralis lateralis thalami, pars postrema" EXACT [NIF_GrossAnatomy:birnlex_1170] synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196] xref: FMA:62196 xref: NIF_GrossAnatomy:birnlex_1170 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002618 name: trochlear nerve fibers namespace: uberon alt_id: UBERON:0002674 alt_id: UBERON:NIF_GrossAnatomy_birnlex_1172-FMA_71116 synonym: "central part of trochlear nerve" EXACT [FMA:71116] synonym: "trochlear nerve fibers" EXACT [FMA:71116] synonym: "trochlear nerve root" EXACT [FMA:71116] synonym: "trochlear nerve tract" EXACT [FMA:71116] xref: FMA:71116 xref: NIF_GrossAnatomy:birnlex_1172 is_a: UBERON:0006843 ! root of cranial nerve [Term] id: UBERON:0002619 name: regional part of cerebral cortex namespace: uberon alt_id: UBERON:0003208 alt_id: UBERON:NIF_GrossAnatomy_birnlex_1173-FMA_68603 def: "A regional part of brain that is part of a cerebral cortex [Obol]." [OBOL:automatic] comment: todo - check MA term synonym: "cerebral cortex part" EXACT [] synonym: "region of cerebral cortex" EXACT [FMA:242193] synonym: "segment of cerebral cortex" NARROW [NIF_GrossAnatomy:birnlex_1173] xref: FMA:242193 xref: MA:0000187 xref: NIF_GrossAnatomy:birnlex_1173 xref: SCTID:119408004 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0001950 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! neocortex [Term] id: UBERON:0002620 name: tuber cinereum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1189-FMA_62327 def: "The tuber cinereum is a hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm. The tuber cinereum is part of the hypothalamus. [WP,unvetted]." [Wikipedia:Tuber_cinereum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:62327 xref: GAID:649 xref: MESH:A.08.186.211.730.385.357.352.870 xref: NIF_GrossAnatomy:birnlex_1189 xref: SCTID:362381006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png xref: ncithesaurus:Tuber_Cinereum is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002621 name: regional part of cochlear nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1195-FMA_83952 def: "A regional part of brain that is part of a cochlear nuclear complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "biological structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cochlear nuclei" EXACT [OBOL:automatic] synonym: "brain biological structure of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of cochlear nuclei" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex segment" EXACT [FMA:83952] synonym: "cochlear nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei biological structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei brain anatomical structure" EXACT [OBOL:automatic] synonym: "cochlear nuclei brain biological structure" EXACT [OBOL:automatic] synonym: "cochlear nuclei neuraxis segment" EXACT [OBOL:automatic] synonym: "cochlear nuclei regional part of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of cochlear nuclei" EXACT [OBOL:automatic] synonym: "regional part of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "segment of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "segment of cochlear nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1195] xref: FMA:83952 xref: NIF_GrossAnatomy:birnlex_1195 is_a: UBERON:0002678 ! regional part of medulla oblongata [Term] id: UBERON:0002622 name: preoptic periventricular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1201-FMA_62324 def: "The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]." [Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus] synonym: "nucleus preopticus periventricularis" EXACT [FMA:62324, FMA:TA] synonym: "periventricular preoptic nucleus" EXACT [FMA:62324] synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324] xref: FMA:62324 xref: NIF_GrossAnatomy:birnlex_1201 xref: SCTID:369127000 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0002623 name: cerebral peduncle namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1202-FMA_62394 def: "The cerebral peduncle, by most classifications, is everything in the mesencephalon except the tectum. The region includes the midbrain tegmentum, crus cerebri, substantia nigra and pretectum. By this definition, the cerebral peduncles are also known as the basis pedunculi, while the large ventral bundle of efferent fibers is referred to as the crus cerebri or the pes pedunculi There are numerous nerve tracts located within this section of the brainstem. Of note, in the cerebral peduncular loop fibers from motor areas of the brain project to the cerebral peduncle and then project to various thalamic nuclei. In as much as the peduncles are an anatomic landmark, for details regarding the function of this area interested readers are referred to the individual referenced articles. On a broad scale, though, this area contains many nerve tracts conveying motor information to and from the brain to the rest of the body. Important fibers running through the cerebral peduncles include the corticospinal tract and the corticobulbar tract, among others. [WP,unvetted]." [Wikipedia:Cerebral_peduncle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cerebral peduncle" EXACT [FMA:62394] synonym: "peduncle of midbrain" EXACT [FMA:62394] synonym: "pedunculus cerebri" EXACT [FMA:62394, FMA:TA] xref: BM:CP xref: BTO:0004676 xref: EFO:0001987 xref: FMA:62394 xref: NIF_GrossAnatomy:birnlex_1202 xref: SCTID:362391000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray689.png/200px-Gray689.png xref: ncithesaurus:Cerebral_Peduncle is_a: UBERON:0007417 ! peduncle of neuraxis [Term] id: UBERON:0002624 name: orbital part of inferior frontal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1207-FMA_61982 synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982] synonym: "pars orbitalis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_1207] xref: FMA:61982 xref: NIF_GrossAnatomy:birnlex_1207 xref: ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002625 name: median preoptic nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1208-FMA_62323 def: "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus." [Wikipedia:Preoptic_area#Median_preoptic_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: ABA:MEPO xref: BM:MPO xref: FMA:62323 xref: NIF_GrossAnatomy:birnlex_1208 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: "spatially_disjoint_from" UBERON:0001934 property_value: "spatially_disjoint_from" UBERON:0002034 property_value: "spatially_disjoint_from" UBERON:0002219 property_value: "spatially_disjoint_from" UBERON:0002689 property_value: "spatially_disjoint_from" UBERON:0002690 property_value: "spatially_disjoint_from" UBERON:0007626 [Term] id: UBERON:0002626 name: head of caudate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1212-FMA_61852 synonym: "caput (caudatus)" EXACT [FMA:61852] synonym: "caudate nuclear head" EXACT [FMA:61852] xref: EMAPA:18547 xref: FMA:61852 xref: NIF_GrossAnatomy:birnlex_1212 xref: SCTID:279298007 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002627 name: capsule of medial geniculate body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1214-FMA_62049 synonym: "capsula corporis geniculati medialis" EXACT [NIF_GrossAnatomy:birnlex_1214] synonym: "medial geniculate body capsule" EXACT [FMA:62049] xref: FMA:62049 xref: NIF_GrossAnatomy:birnlex_1214 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002628 name: tail of caudate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1215-FMA_61854 synonym: "caudate nuclear tail" EXACT [FMA:61854] xref: EMAPA:18548 xref: FMA:61854 xref: NIF_GrossAnatomy:birnlex_1215 xref: SCTID:279299004 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002629 name: triangular part of inferior frontal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1216-FMA_61980 synonym: "pars triangularis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_1216] xref: FMA:61980 xref: NIF_GrossAnatomy:birnlex_1216 xref: ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002630 name: body of caudate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1217-FMA_61853 synonym: "caudate nuclear body" EXACT [FMA:61853] synonym: "corpus (caudatus)" EXACT [FMA:61853] xref: FMA:61853 xref: NIF_GrossAnatomy:birnlex_1217 xref: SCTID:314175006 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002631 name: cerebral crus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1218-FMA_72464 def: "The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]." [Wikipedia:Cerebral_crus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "base of cerebral peduncle" RELATED [BTO:0004677] synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464] synonym: "crus cerebri" EXACT [BTO:0004677, EV:0100243] xref: BTO:0004677 xref: EV:0100243 xref: FMA:72464 xref: NIF_GrossAnatomy:birnlex_1218 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: ncithesaurus:Crus_Cerebri is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002623 ! cerebral peduncle [Term] id: UBERON:0002632 name: medial part of medial mammillary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1220-FMA_62345 synonym: "medial mammillary nucleus (carpenter)" EXACT [] synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345] synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345] synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345] xref: ABA:Mmme xref: FMA:62345 xref: NIF_GrossAnatomy:birnlex_1220 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002633 name: motor nucleus of trigeminal nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1222-FMA_54562 def: "The trigeminal motor nucleus contains motor neurons that innervate muscles of the first branchial arch, namely the muscles of mastication, the tensor tympani, tensor veli palatini, mylohyoid, and anterior belly of the digastric." [Wikipedia:Trigeminal_motor_nucleus] comment: note this in ZFA this is part of the medulla; pons is a dubious structure for zebrafish subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "motor nucleus V" EXACT [ZFA:0001365] synonym: "motor nucleus of cranial nerve v" EXACT [] synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562] synonym: "motor trigeminal nucleus" EXACT [BTO:0001075] synonym: "nV" EXACT [ZFA:0001365] synonym: "nucleus motorius nervi trigemini" EXACT [FMA:54562, FMA:TA] synonym: "trigeminal V motor nucleus" EXACT [MA:0001029] synonym: "trigeminal motor nucleus" EXACT [ZFA:0001365] xref: ABA:V xref: BM:Vm xref: BTO:0001075 xref: EV:0100273 xref: FMA:54562 xref: MA:0001029 xref: NIF_GrossAnatomy:birnlex_1222 xref: SCTID:38390003 xref: VHOG:0001355 xref: ZFA:0001365 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: ncithesaurus:Motor_Nucleus_of_the_Trigeminal_Nerve is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002925 ! trigeminal nucleus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002925 ! trigeminal nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum relationship: part_of UBERON:0001896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002634 name: anterior nucleus of hypothalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1226-FMA_62319 def: "The Anterior hypothalamic nucleus is a nucleus of the hypothalamus. Its function is thermoregulation (the maintenance of body temperature between certain parameters) of the body. [WP,unvetted]." [Wikipedia:Anterior_hypothalamic_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior hypothalamic area" EXACT [FMA:62319] synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319] synonym: "area hypothalamica rostralis" EXACT [FMA:62319, FMA:TA] synonym: "fundamental gray substance" EXACT [FMA:62319] synonym: "nucleus anterior hypothalami" RELATED [BTO:0002450] synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319] xref: ABA:AHN xref: BM:Die-Hy-HAA xref: BTO:0002450 xref: EV:0100231 xref: FMA:62319 xref: GAID:642 xref: MESH:A.08.186.211.730.385.357.342.063 xref: NIF_GrossAnatomy:birnlex_1226 xref: SCTID:369133009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area property_value: "spatially_disjoint_from" UBERON:0001935 property_value: "spatially_disjoint_from" UBERON:0002035 property_value: "spatially_disjoint_from" UBERON:0002206 property_value: "spatially_disjoint_from" UBERON:0002706 [Term] id: UBERON:0002635 name: regional part of midbrain tegmentum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1227-FMA_62399 synonym: "midbrain tegmentum segment" EXACT [FMA:62399] synonym: "segment of midbrain tegmentum" EXACT [NIF_GrossAnatomy:birnlex_1227] xref: FMA:62399 xref: NIF_GrossAnatomy:birnlex_1227 is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0002636 name: lateral pulvinar nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1228-FMA_62181 synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181] synonym: "nucleus pulvinaris lateralis" EXACT [NIF_GrossAnatomy:birnlex_1228] synonym: "nucleus pulvinaris lateralis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1228] synonym: "nucleus pulvinaris lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1228] synonym: "nucleus pulvinaris thalami, pars lateralis" EXACT [NIF_GrossAnatomy:birnlex_1228] xref: BM:Die-Th-Pl-Pll xref: FMA:62181 xref: NIF_GrossAnatomy:birnlex_1228 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002637 name: ventral anterior nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1232-FMA_62184 def: "The ventral anterior nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_anterior_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus lateropolaris" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "nucleus ventralis anterior" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "nucleus ventralis anterior thalami" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "nucleus ventralis thalami anterior" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184] synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184] synonym: "ventroanterior nucleus of the thalamus" EXACT [] synonym: "ventroanterior thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1232] xref: BM:Die-Th-VA xref: BTO:0002468 xref: EV:0100199 xref: FMA:62184 xref: NIF_GrossAnatomy:birnlex_1232 xref: SCTID:279131008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002638 name: medial pulvinar nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1233-FMA_62182 synonym: "nucleus pulvinaris medialis" EXACT [NIF_GrossAnatomy:birnlex_1233] synonym: "nucleus pulvinaris medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1233] synonym: "nucleus pulvinaris thalami, pars medialis" EXACT [NIF_GrossAnatomy:birnlex_1233] xref: BM:Die-Th-Pl-Plm xref: FMA:62182 xref: NIF_GrossAnatomy:birnlex_1233 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002639 name: midbrain reticular formation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1235-FMA_62406 synonym: "reticular formation of midbrain" EXACT [FMA:62406] synonym: "tegmental reticular formation" EXACT [FMA:62406] xref: BM:MB-MBRF xref: FMA:62406 xref: NIF_GrossAnatomy:birnlex_1235 xref: SCTID:369234009 is_a: UBERON:0002275 ! reticular formation relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002640 name: cuneocerebellar tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1238-FMA_72637 def: "The posterior external arcuate fibers (dorsal external arcuate fibers) take origin in the gracile and cuneate nuclei; they pass to the inferior peduncle of the same side. It is uncertain whether fibers are continued directly from the gracile and cuneate fasciculi into the inferior peduncle. The term 'cuneocerebellar tract' is sometimes used to collectively refer to the posterior external arcuate fibers. [WP,unvetted]." [Wikipedia:Cuneocerebellar_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cuneocerebellar fibers" EXACT [NIF_GrossAnatomy:birnlex_1238] xref: FMA:72637 xref: NIF_GrossAnatomy:birnlex_1238 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray699.png/200px-Gray699.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002641 name: oral pulvinar nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1239-FMA_62180 synonym: "anterior pulvinar nucleus" EXACT [FMA:62180] synonym: "nucleus pulvinaris anterior" EXACT [FMA:62180, FMA:TA] synonym: "nucleus pulvinaris oralis" EXACT [NIF_GrossAnatomy:birnlex_1239] synonym: "nucleus pulvinaris oralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1239] synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180] synonym: "oral part of pulvinar" EXACT [FMA:62180] synonym: "oral portion of pulvinar" EXACT [FMA:62180] xref: BM:Die-Th-Pl-Pla xref: FMA:62180 xref: NIF_GrossAnatomy:birnlex_1239 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002642 name: cuneate fasciculus of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1242-FMA_72623 comment: TODO - change definition to be the *whole* of the CF in the MO. isa parentage to fasciculus of brain should be inferred xref: FMA:72623 xref: NIF_GrossAnatomy:birnlex_1242 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0005832 ! cuneate fasciculus is_a: UBERON:0005838 ! fasciculus of brain [Term] id: UBERON:0002643 name: decussation of medial lemniscus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1245-FMA_72622 def: "The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]." [Wikipedia:Sensory_decussation] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "decussation of lemnisci" EXACT [FMA:72622] synonym: "decussation of lemniscus" EXACT [FMA:72622] synonym: "decussation of medial lemnisci" EXACT [FMA:72622] synonym: "medial lemniscus decussation" EXACT [FMA:72622] synonym: "medullary sensory decussation" EXACT [FMA:72622] synonym: "sensory decussation" EXACT [FMA:72622] xref: BM:Me-LMX xref: FMA:72622 xref: NIF_GrossAnatomy:birnlex_1245 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002644 name: intermediate orbital gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1247-FMA_80183 xref: FMA:80183 xref: NIF_GrossAnatomy:birnlex_1247 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002645 name: densocellular part of medial dorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1255-FMA_62163 synonym: "nucleus medialis dorsalis paralamellaris (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1255] synonym: "nucleus medialis dorsalis, pars densocellularis" EXACT [NIF_GrossAnatomy:birnlex_1255] xref: FMA:62163 xref: NIF_GrossAnatomy:birnlex_1255 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002646 name: dorsal longitudinal fasciculus of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1257-FMA_72617 def: "A dorsal longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of medulla" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of medulla" EXACT [OBOL:automatic] synonym: "medulla bundle of Schutz" EXACT [OBOL:automatic] synonym: "medulla dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "medulla fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "medulla posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of medulla" EXACT [OBOL:automatic] xref: FMA:72617 xref: NIF_GrossAnatomy:birnlex_1257 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003045 ! dorsal longitudinal fasciculus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002647 name: magnocellular part of medial dorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1262-FMA_62161 synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161] synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161] synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161] synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161] synonym: "magnocellular part of mediodorsal nucleus" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "nucleus medialis dorsalis, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "nucleus medialis fibrosus" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "nucleus medialis fibrosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "pars magnocellularis nuclei mediodorsalis thalami" EXACT [FMA:62161, FMA:TA] xref: FMA:62161 xref: NIF_GrossAnatomy:birnlex_1262 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002648 name: anterior median eminence namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1264-FMA_74870 xref: FMA:74870 xref: NIF_GrossAnatomy:birnlex_1264 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002649 name: dorsolateral fasciculus of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1267-FMA_72616 def: "." [Wikipedia:Lissauer's_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsolateral tract" EXACT [FMA:72616] synonym: "lissauer's tract" EXACT [FMA:72616] synonym: "posterolateral fasciculus" EXACT [FMA:72616] synonym: "posterolateral tract" EXACT [FMA:72616] synonym: "tract of lissauer" EXACT [] synonym: "tractus posterolateralis" EXACT [FMA:72616, FMA:TA] synonym: "zone of lissauer" EXACT [] xref: FMA:72616 xref: NIF_GrossAnatomy:birnlex_1267 xref: SCTID:369287009 xref: ncithesaurus:Tract_of_Lissauer is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002650 name: paralaminar part of medial dorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1276-FMA_62160 synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160] synonym: "mediodorsal thalamic nucleus, paralaminar part" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis caudalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis thalami, pars multiformis" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis, pars multiformis" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis, pars paralaminaris" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160] synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "pars paralaminaris nuclei mediodorsalis thalami" EXACT [FMA:62160, FMA:TA] synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160] xref: FMA:62160 xref: NIF_GrossAnatomy:birnlex_1276 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002651 name: anterior horn of lateral ventricle namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1279-FMA_74520 def: "The anterior cornu (frontal horn, anterior horn; precornu) of the lateral ventricle passes forward and lateralward, with a slight inclination downward, from the interventricular foramen into the frontal lobe, curving around the anterior end of the caudate nucleus. Its floor is formed by the upper surface of the reflected portion of the corpus callosum, the rostrum. It is bounded medially by the anterior portion of the septum pellucidum, and laterally by the head of the caudate nucleus. Its apex reaches the posterior surface of the genu of the corpus callosum. [WP,unvetted]." [Wikipedia:Anterior_horn_of_lateral_ventricle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520] synonym: "cornu anterius ventriculi lateralis" EXACT [FMA:74520, FMA:TA] synonym: "frontal horn of lateral ventricle" EXACT [FMA:74520] xref: FMA:74520 xref: NIF_GrossAnatomy:birnlex_1279 xref: SCTID:279247001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png xref: ncithesaurus:Frontal_Horn_of_the_Lateral_Ventricle is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002652 name: posterior median eminence namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1280-FMA_74875 xref: FMA:74875 xref: NIF_GrossAnatomy:birnlex_1280 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002653 name: gracile fasciculus of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1282-FMA_72624 synonym: "column of goll" EXACT [] synonym: "fasciculus of goll" EXACT [] synonym: "goll's tract" EXACT [FMA:72624] synonym: "gracile fascicle (gall)" EXACT [NIF_GrossAnatomy:birnlex_1282] synonym: "gracile fascicle of medulla" EXACT [FMA:72624] synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624] synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624] synonym: "tract of gall" EXACT [] xref: FMA:72624 xref: NIF_GrossAnatomy:birnlex_1282 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0005821 ! gracile fasciculus is_a: UBERON:0005838 ! fasciculus of brain [Term] id: UBERON:0002654 name: parvicellular part of medial dorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1283-FMA_62162 synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162] synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162] synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "mediodorsal thalamic nucleus, pars fasciculosa" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "nucleus medialis dorsalis fasciculosis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "nucleus medialis dorsalis nucleus fasciculosis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "nucleus medialis dorsalis, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "pars parvocellularis lateralis nuclei mediodorsalis thalami" EXACT [FMA:62162, FMA:TA] synonym: "pars principalis nuclei ventralis anterior thalami" EXACT [FMA:62162, FMA:TA] synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162] synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162] xref: FMA:62162 xref: NIF_GrossAnatomy:birnlex_1283 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002655 name: body of lateral ventricle namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1287-FMA_83703 def: "The body of lateral ventricle (cella) extends from the interventricular foramen to the splenium of the corpus callosum. It is an irregularly curved cavity, triangular on transverse section, with a roof, a floor, and a medial wall. The roof is formed by the under surface of the corpus callosum; the floor by the following parts, enumerated in their order of position, from before backward: the caudate nucleus of the corpus striatum, the stria terminalis and the terminal vein, the lateral portion of the upper surface of the thalamus, the choroid plexus, and the lateral part of the fornix; the medial wall is the posterior part of the septum pellucidum, which separates it from the opposite ventricle. [WP,unvetted]." [Wikipedia:Body_of_lateral_ventricle] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central part of lateral ventricle" EXACT [FMA:83703] synonym: "lateral ventricular body" EXACT [FMA:83703] synonym: "pars centralis ventriculi lateralis" EXACT [FMA:83703, FMA:TA] xref: FMA:83703 xref: NIF_GrossAnatomy:birnlex_1287 xref: SCTID:279246005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png xref: ncithesaurus:Body_of_the_Lateral_Ventricle is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002656 name: periamygdaloid area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1291-FMA_62485 synonym: "para-amygdaloid cortex" EXACT [FMA:62485] synonym: "periamygdaloid cortex" EXACT [FMA:62485] synonym: "periamygdaloid region" EXACT [FMA:62485] synonym: "semilunar gyrus" EXACT [FMA:62485] synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485] xref: BM:Tel-Cx-PAM xref: FMA:62485 xref: NIF_GrossAnatomy:birnlex_1291 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002657 name: posterior parahippocampal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1295-FMA_67966 synonym: "parahippocampal gyrus (amaral)" EXACT [] synonym: "parahippocampal gyrus (insausti)" EXACT [NIF_GrossAnatomy:birnlex_1295] xref: FMA:67966 xref: NIF_GrossAnatomy:birnlex_1295 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002658 name: medial lemniscus of midbrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1296-FMA_72461 def: "A medial lemniscus that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic] xref: FMA:72461 xref: NIF_GrossAnatomy:birnlex_1296 is_a: UBERON:0003002 ! medial lemniscus relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002659 name: superior medullary velum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1300-FMA_74508 def: "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]." [Wikipedia:Superior_medullary_velum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior medullary velum" EXACT [FMA:74508] xref: FMA:74508 xref: NIF_GrossAnatomy:birnlex_1300 xref: SCTID:369269006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png is_a: UBERON:0003035 ! regional part of cerebellar white matter [Term] id: UBERON:0002660 name: medial longitudinal fasciculus of midbrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1302-FMA_72454 def: "A medial longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:72454 xref: NIF_GrossAnatomy:birnlex_1302 is_a: UBERON:0002309 ! medial longitudinal fasciculus relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002661 name: superior frontal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1303-FMA_61857 def: "The superior frontal gyrus makes up about one-third of the frontal lobe of the human brain. It is bounded laterally by the superior frontal sulcus. The superior frontal gyrus, like the inferior frontal gyrus and the middle frontal gyrus, is more of a region than a true gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "marginal gyrus" EXACT [FMA:61857] synonym: "superior frontal convolution" EXACT [FMA:61857] xref: BTO:0004836 xref: EFO:0001991 xref: FMA:61857 xref: NIF_GrossAnatomy:birnlex_1303 xref: SCTID:279166005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Superior_frontal_gyrus.png/200px-Superior_frontal_gyrus.png xref: ncithesaurus:Superior_Frontal_Convolution is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002662 name: medial pes lemniscus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1310-FMA_72460 synonym: "superficial pes lemniscus" EXACT [FMA:72460] xref: FMA:72460 xref: NIF_GrossAnatomy:birnlex_1310 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002663 name: septal nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1313-FMA_61845 def: "The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds & Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted]." [Wikipedia:Septal_nuclei] comment: TODO - nucleus vs nuclear complex subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "parolfactory nuclei" EXACT [FMA:61845] synonym: "septal nuclei" EXACT [FMA:61845] synonym: "septal nucleus" EXACT [MA:0002978] xref: EHDAA2:0004709 xref: FMA:61845 xref: GAID:637 xref: MA:0002978 xref: MESH:A.08.186.211.577.750.800 xref: NIF_GrossAnatomy:birnlex_1313 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0000446 ! septum of telencephalon [Term] id: UBERON:0002664 name: lateral part of medial mammillary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1314-FMA_62346 synonym: "intercalated mammillary nucleus" EXACT [FMA:62346] synonym: "intermediate mammillary nucleus" EXACT [FMA:62346] synonym: "lateral mammillary nucleus (gagel)" EXACT [] synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346] synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346] xref: FMA:62346 xref: NIF_GrossAnatomy:birnlex_1314 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002665 name: supracallosal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1316-FMA_61920 def: "The supracallosal gyrus (indusium griseum; gyrus epicallosus) consists of a thin layer of grey matter in contact with the dorsal surface of the corpus callosum and continuous laterally with the grey matter of the cingulate gyrus. It contains two longitudinally directed strands of fibers termed respectively the medial and lateral longitudinal striae. The supracallosal gyrus is prolonged around the splenium of the corpus callosum as a delicate lamina, the fasciola cinerea, which is continuous below with the fascia dentata hippocampi. [WP,unvetted]." [Wikipedia:Supracallosal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920] synonym: "supracommissural hippocampus" EXACT [FMA:61920] xref: BTO:0003738 xref: FMA:61920 xref: NIF_GrossAnatomy:birnlex_1316 xref: SCTID:369231001 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002666 name: mesencephalic tract of trigeminal nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1318-FMA_72489 synonym: "mesencephalic root of v" EXACT [] synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489] xref: FMA:72489 xref: NIF_GrossAnatomy:birnlex_1318 xref: SCTID:369263007 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002667 name: lateral septal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1321-FMA_61878 synonym: "lateral parolfactory nucleus" EXACT [FMA:61878] synonym: "lateral septal nucleus (cajal)" EXACT [NIF_GrossAnatomy:birnlex_1321] synonym: "lateral septum" EXACT [NIF_GrossAnatomy:birnlex_1321] synonym: "lateral septum nucleus" EXACT [NIF_GrossAnatomy:birnlex_1321] xref: ABA:LS xref: BM:Tel-Spt-SLN xref: FMA:61878 xref: NIF_GrossAnatomy:birnlex_1321 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0001878 property_value: "spatially_disjoint_from" UBERON:0007630 [Term] id: UBERON:0002668 name: oculomotor nerve fibers namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1323-FMA_72457 comment: todo - make subclass of root of cranial nerve synonym: "central part of oculomotor nerve" EXACT [FMA:72457] synonym: "oculomotor nerve fibers" EXACT [FMA:72457] synonym: "root of oculomotor nerve" EXACT [FMA:72457] xref: FMA:72457 xref: NIF_GrossAnatomy:birnlex_1323 is_a: UBERON:0002211 ! nerve root is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002669 name: anterior horizontal limb of lateral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1327-FMA_83760 synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760] synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760] synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760] synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "horizontal ramus of sylvian fissure" EXACT [] synonym: "ramus anterior sulci lateralis cerebri" EXACT [FMA:83760, FMA:TA] xref: FMA:83760 xref: NIF_GrossAnatomy:birnlex_1327 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002670 name: anterior ascending limb of lateral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1330-FMA_83759 synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759] synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759] synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of sylvian fissure" EXACT [] synonym: "middle ramus of lateral fissure" EXACT [FMA:83759] synonym: "ramus ascendens sulci lateralis cerebri" EXACT [FMA:83759, FMA:TA] synonym: "superior branch of lateral fissure" EXACT [FMA:83759] xref: FMA:83759 xref: NIF_GrossAnatomy:birnlex_1330 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002671 name: pallidotegmental fasciculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1331-FMA_72458 synonym: "pallidotegmental tract" EXACT [FMA:72458] xref: FMA:72458 xref: NIF_GrossAnatomy:birnlex_1331 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002672 name: anterior subcentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1332-FMA_83765 xref: FMA:83765 xref: NIF_GrossAnatomy:birnlex_1332 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002673 name: vestibular nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1337-FMA_72239 def: "The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]." [Wikipedia:Vestibular_nuclei, http://www.sciencedirect.com/science/article/pii/S0079612305510069, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413105&group_id=36855] comment: Editor notes: In TA they are grouped in both the pons and medulla; WP says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nuclei vestibulares in medulla oblongata" EXACT [FMA:72239, FMA:TA] synonym: "vestibular nuclei" EXACT [FMA:72239] synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239] synonym: "vestibular nucleus" RELATED [GO:0021750] xref: ABA:VNC xref: BM:Me-VS xref: BTO:0004368 xref: EV:0100254 xref: FMA:72239 xref: GAID:602 xref: MESH:A.08.186.211.132.810.428.600.800 xref: NIF_GrossAnatomy:birnlex_1337 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0004681 ! vestibular system property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002675 name: diagonal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1344-FMA_83758 xref: FMA:83758 xref: NIF_GrossAnatomy:birnlex_1344 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002676 name: ventral supraoptic decussation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1347-FMA_62052 def: "The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]." [Wikipedia:Ventral_supraoptic_decussation] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "commissura supraoptica ventralis" EXACT [FMA:62052, FMA:TA] synonym: "commissure of gudden" EXACT [] synonym: "gudden commissure" EXACT [FMA:62052] synonym: "gudden's commissure" EXACT [FMA:62052] synonym: "supraoptic commissures, ventral" EXACT [FMA:62052] synonym: "ventral supra-optic commissure" EXACT [FMA:62052] synonym: "ventral supraoptic commissure (of Meynert)" EXACT [] synonym: "ventral supraoptic decussation of gudden" EXACT [] synonym: "von Gudden's commissure" EXACT [FMA:62052] xref: FMA:62052 xref: NIF_GrossAnatomy:birnlex_1347 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png is_a: UBERON:0001020 ! commissure [Term] id: UBERON:0002677 name: regional part of medullary raphe nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1349-FMA_83951 def: "A regional part of brain that is part of a medullary raphe nuclear complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "biological structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "brain anatomical structure of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "brain biological structure of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex segment" EXACT [FMA:83951] synonym: "medullary raphe nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "neuraxis segment of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla anatomical structure of brain" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla biological structure of brain" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla brain anatomical structure" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla brain biological structure" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla neuraxis segment" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla regional part of brain" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla segment of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "regional part of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "segment of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of medullary raphe nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1349] xref: FMA:83951 xref: NIF_GrossAnatomy:birnlex_1349 is_a: UBERON:0002678 ! regional part of medulla oblongata [Term] id: UBERON:0002678 name: regional part of medulla oblongata namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1355-FMA_71011 def: "A regional part of brain that is part of a medulla oblongata [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of bulb" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of bulb" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "biological structure of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of bulb" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of metepencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of bulb" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain biological structure of metepencephalon" EXACT [OBOL:automatic] synonym: "bulb anatomical structure of brain" EXACT [OBOL:automatic] synonym: "bulb biological structure of brain" EXACT [OBOL:automatic] synonym: "bulb brain anatomical structure" EXACT [OBOL:automatic] synonym: "bulb brain biological structure" EXACT [OBOL:automatic] synonym: "bulb neuraxis segment" EXACT [OBOL:automatic] synonym: "bulb regional part of brain" EXACT [OBOL:automatic] synonym: "bulb segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblonmgata regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata segment of brain" EXACT [OBOL:automatic] synonym: "medullary oblongata segment" EXACT [FMA:71011] synonym: "metepencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "metepencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "metepencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "metepencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "metepencephalon segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of bulb" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblongata" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "neuraxis segment of metepencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of bulb" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "regional part of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of bulb" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "segment of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "segment of medulla oblongata" EXACT [NIF_GrossAnatomy:birnlex_1355] xref: FMA:71011 xref: NIF_GrossAnatomy:birnlex_1355 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002679 name: anterodorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1358-FMA_62141 synonym: "anterodorsal nucleus of thalamus" EXACT [FMA:62141] synonym: "anterodorsal nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141] synonym: "nucleus anterior dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterior dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterior thalami dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterodorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterodorsalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterodorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterosuperior" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus thalamicus anterodorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] xref: ABA:AD xref: BM:Die-Th-AD xref: FMA:62141 xref: NIF_GrossAnatomy:birnlex_1358 xref: SCTID:279127002 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0002681 property_value: "spatially_disjoint_from" UBERON:0002685 property_value: "spatially_disjoint_from" UBERON:0002984 [Term] id: UBERON:0002680 name: regional part of metencephalon namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942 def: "A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of metencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "biological structure of brain of metencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic] synonym: "brain anatomical structure of metencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of epencephalon-2" EXACT [OBOL:automatic] synonym: "brain biological structure of metencephalon" EXACT [OBOL:automatic] synonym: "epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-2 biological structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic] synonym: "epencephalon-2 brain biological structure" EXACT [OBOL:automatic] synonym: "epencephalon-2 neuraxis segment" EXACT [OBOL:automatic] synonym: "epencephalon-2 regional part of brain" EXACT [OBOL:automatic] synonym: "epencephalon-2 segment of brain" EXACT [OBOL:automatic] synonym: "metencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "metencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "metencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "metencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "metencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "metencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "metencephalon segment of brain" EXACT [OBOL:automatic] synonym: "metencephalon subdivision" EXACT [FMA:67942] synonym: "neuraxis segment of epencephalon-2" EXACT [OBOL:automatic] synonym: "neuraxis segment of metencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "regional part of brain of metencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "segment of brain of metencephalon" EXACT [OBOL:automatic] synonym: "segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361] xref: FMA:67942 xref: NIF_GrossAnatomy:birnlex_1361 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002681 name: anteromedial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1365-FMA_62142 synonym: "anteromedial nucleus of thalamus" EXACT [FMA:62142] synonym: "anteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142] synonym: "nucleus anterior medialis" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anterior medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anterior thalami medialis" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anteromedialis" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anteromedialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anteromedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus thalamicus anteromedialis" EXACT [NIF_GrossAnatomy:birnlex_1365] xref: ABA:AM xref: BM:Die-AM xref: FMA:62142 xref: NIF_GrossAnatomy:birnlex_1365 xref: SCTID:279128007 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0002679 property_value: "spatially_disjoint_from" UBERON:0002685 property_value: "spatially_disjoint_from" UBERON:0002984 [Term] id: UBERON:0002682 name: abducens nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1366-FMA_54504 def: "The abducens nucleus is the originating nucleus from which the abducens nerve emerges - a cranial nerve nucleus. This nucleus is located beneath the fourth ventricle in the caudal portion of the pons, medial to the sulcus limitans. The abducens nucleus along with the internal genu of the facial nerve make up the facial colliculus, a hump at the caudal end of the medial eminence on the dorsal aspect of the pons. [WP,unvetted]." [Wikipedia:Abducens_nucleus] comment: part of medulla oblongata in ABA and ZFA; part of pons in MA and pontine tegmentum in NIF; note that pons/medulla are spatially disjoint in ABA. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "abducens VI nucleus" EXACT [MA:0001010] synonym: "abducens motor nucleus" EXACT [ZFA:0000713] synonym: "abducens nerve nucleus" EXACT [FMA:54504] synonym: "abducent nucleus" EXACT [FMA:54504] synonym: "motor nucleus VI" EXACT [ZFA:0000713] synonym: "nVI" EXACT [ZFA:0000713] synonym: "nucleus nervi abducentis" EXACT [FMA:54504, FMA:TA] synonym: "nucleus of abducens nerve" EXACT [FMA:54504] synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504] synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504] xref: ABA:VI xref: BM:Pons-VI xref: EHDAA2:0004310 xref: EV:0100266 xref: FMA:54504 xref: MA:0001010 xref: NIF_GrossAnatomy:birnlex_1366 xref: SCTID:280165008 xref: ZFA:0000713 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: ncithesaurus:Abducens_Nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0001896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002683 name: rhinal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1368-FMA_83746 def: "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]." [Wikipedia:Rhinal_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fissura rhinalis" EXACT [NIF_GrossAnatomy:birnlex_1368] synonym: "rhinal fissuer (turner, rezius)" EXACT [NIF_GrossAnatomy:birnlex_1368] synonym: "rhinal fissure" EXACT [FMA:83746] synonym: "sulcus rhinalis" EXACT [NIF_GrossAnatomy:birnlex_1368] xref: BM:Tel-Cx-RS xref: FMA:83746 xref: NIF_GrossAnatomy:birnlex_1368 xref: SCTID:279357002 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002684 name: nucleus raphe obscurus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1369-FMA_72585 def: "The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]." [Wikipedia:Nucleus_raphe_obscurus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus raphes obscurus" EXACT [FMA:72585, FMA:TA] synonym: "obscurus raphe nucleus" EXACT [FMA:72585] synonym: "raphe obscurus nucleus" EXACT [FMA:72585] xref: ABA:RO xref: FMA:72585 xref: MA:0002981 xref: NIF_GrossAnatomy:birnlex_1369 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002677 ! regional part of medullary raphe nuclear complex is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 ! medullary raphe nuclear complex property_value: "spatially_disjoint_from" UBERON:0002156 property_value: "spatially_disjoint_from" UBERON:0002157 [Term] id: UBERON:0002685 name: anteroventral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1372-FMA_62143 synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143] synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143] synonym: "nucleus anterior thalami ventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anterior ventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anteroinferior" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anteroventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anteroventralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus thalamicus anteroprincipalis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus thalamicus anteroventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] xref: ABA:AV xref: BM:Die-AV xref: EV:0100199 xref: FMA:62143 xref: NIF_GrossAnatomy:birnlex_1372 xref: SCTID:279130009 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0002679 property_value: "spatially_disjoint_from" UBERON:0002681 property_value: "spatially_disjoint_from" UBERON:0002984 [Term] id: UBERON:0002686 name: angular gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1376-FMA_61898 def: "The angular gyrus is a region of the brain in the parietal lobe, that lies near the superior edge of the temporal lobe, and immediately posterior to the supramarginal gyrus; it is involved in a number of processes related to language, mathematics and cognition. It is Brodmann area 39 of the human brain. [WP,unvetted]." [Wikipedia:Angular_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898] synonym: "preoccipital gyrus" EXACT [FMA:61898] xref: FMA:61898 xref: NIF_GrossAnatomy:birnlex_1376 xref: SCTID:279186009 xref: ncithesaurus:Angular_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002687 name: area x namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1379-FMA_62198 synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "area x of olszewski" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus lateralis intermedius mediodorsalis situs ventralis medialis" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus ventralis oralis, pars posterior (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus ventrooralis internus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus ventrooralis internus, superior part" EXACT [NIF_GrossAnatomy:birnlex_1379] xref: FMA:62198 xref: NIF_GrossAnatomy:birnlex_1379 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002688 name: supramarginal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1381-FMA_61897 def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [Wikipedia:Supramarginal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Brodmann area 40" EXACT [Wikipedia:Supramarginal_gyrus] synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897] synonym: "inferior parietal lobule (krieg)" EXACT [] xref: FMA:61897 xref: NIF_GrossAnatomy:birnlex_1381 xref: SCTID:279185008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg/200px-Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg.png xref: ncithesaurus:Supramarginal_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002689 name: supraoptic crest namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1400-FMA_62315 def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [Wikipedia:Organum_vasculosum_of_the_lamina_terminalis, https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] comment: AO notes: NIF has two classes here synonym: "organum vasculosum lamina terminalis" EXACT [NIF_GrossAnatomy:nlx_anat_100313] synonym: "organum vasculosum laminae terminalis" EXACT [FMA:62315, FMA:TA] synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400] synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315] xref: ABA:OV xref: FMA:62315 xref: NIF_GrossAnatomy:birnlex_1400 xref: NIF_GrossAnatomy:nlx_anat_100313 is_a: UBERON:0003048 ! regional part of hypothalamus is_a: UBERON:0010135 ! sensory circumventricular organ relationship: part_of UBERON:0002550 ! anterior hypothalamic region property_value: "spatially_disjoint_from" UBERON:0001934 property_value: "spatially_disjoint_from" UBERON:0002034 property_value: "spatially_disjoint_from" UBERON:0002219 property_value: "spatially_disjoint_from" UBERON:0002625 property_value: "spatially_disjoint_from" UBERON:0002690 property_value: "spatially_disjoint_from" UBERON:0007626 [Term] id: UBERON:0002690 name: anteroventral periventricular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1401-FMA_62314 xref: ABA:AVPV xref: FMA:62314 xref: NIF_GrossAnatomy:birnlex_1401 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0001934 property_value: "spatially_disjoint_from" UBERON:0002034 property_value: "spatially_disjoint_from" UBERON:0002219 property_value: "spatially_disjoint_from" UBERON:0002625 property_value: "spatially_disjoint_from" UBERON:0002689 property_value: "spatially_disjoint_from" UBERON:0007626 [Term] id: UBERON:0002691 name: ventral tegmental area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1415-FMA_72438 def: "The ventral tegmentum (tegmentum is Latin for covering), better known as the ventral tegmental area (VTA), is a group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]." [Wikipedia:Ventral_tegmental_area] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "ventral tegmental area of tsai" EXACT [] synonym: "ventral tegmental nucleus (tsai)" EXACT [] synonym: "ventral tegmental nucleus of tsai" EXACT [] xref: ABA:VTA xref: BM:MB-VTA xref: EFO:0001935 xref: FMA:72438 xref: GAID:587 xref: MESH:A.08.186.211.132.659.822.820 xref: NIF_GrossAnatomy:birnlex_1415 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0002692 name: medullary raphe nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1420-FMA_68874 synonym: "raphe medullae oblongatae" EXACT [FMA:68874, FMA:TA] synonym: "raphe nuclei of medulla" EXACT [FMA:68874] synonym: "raphe of medulla oblongata" EXACT [FMA:68874] xref: FMA:68874 xref: NIF_GrossAnatomy:birnlex_1420 xref: SCTID:362420006 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0004684 ! raphe nuclei [Term] id: UBERON:0002693 name: occipitotemporal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1422-FMA_74518 synonym: "inferior temporal fissure" EXACT [FMA:74518] synonym: "inferior temporal fissure (crosby)" EXACT [NIF_GrossAnatomy:birnlex_1422] synonym: "inferior temporal sulcus (roberts)" EXACT [] synonym: "inferior temporal sulcus (szikla)" EXACT [] synonym: "inferior temporal sulcus-2" EXACT [FMA:74518] synonym: "lateral occipitotemporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_1422] synonym: "occipito-temporal sulcus" EXACT [FMA:74518] synonym: "third temporal sulcus" EXACT [FMA:74518] xref: BM:Tel-Cx-OTS xref: FMA:74518 xref: NIF_GrossAnatomy:birnlex_1422 xref: SCTID:369220009 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002694 name: anterior hypothalamic commissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1424-FMA_62053 synonym: "anterior hypothalamic commissure (ganser)" EXACT [] synonym: "anterior hypothalamic decussation of ganser" EXACT [] xref: FMA:62053 xref: NIF_GrossAnatomy:birnlex_1424 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002695 name: parieto-occipital sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1428-FMA_83754 def: "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]." [Wikipedia:Parieto-occipital_sulcus] comment: AO notes - two classes in ncit (in general ncit distinguishes between fissue and sulcus, whereas FMA treats these as exact synonyms) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fissura parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "parieto-occipital fissure" EXACT [FMA:83754] synonym: "parieto-occipital incisure" EXACT [FMA:83754] synonym: "parietooccipital sulcus" EXACT [FMA:83754] synonym: "sulcus parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "sulcus parieto-occipitalis medialis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "sulcus parietoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "sulcus parietooccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] xref: BM:Tel-Cx-POS xref: FMA:83754 xref: NIF_GrossAnatomy:birnlex_1428 xref: OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA xref: SCTID:279354009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Gray726_parieto-occipital_sulcus.png/200px-Gray726_parieto-occipital_sulcus.png xref: ncithesaurus:Parieto-occipital_Fissure xref: ncithesaurus:Parieto-occipital_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002696 name: cuneiform nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1430-FMA_72427 synonym: "parabigeminal area (mai)" EXACT [] xref: ABA:CUN xref: BM:MB-CNF xref: FMA:72427 xref: NIF_GrossAnatomy:birnlex_1430 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0002697 name: dorsal supraoptic decussation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1433-FMA_62051 synonym: "Meynert's commissure" EXACT [FMA:62051] synonym: "commissura supraoptica dorsalis" EXACT [FMA:62051, FMA:TA] synonym: "commissure of Meynert" EXACT [] synonym: "dorsal supra-optic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure (of ganser)" EXACT [] synonym: "dorsal supraoptic decussation (of Meynert)" EXACT [NIF_GrossAnatomy:birnlex_1433] synonym: "dorsal supraoptic decussation (of ganser)" EXACT [NIF_GrossAnatomy:birnlex_1433] synonym: "dorsal supraoptic decussation of Meynert" EXACT [] synonym: "ganser's commissure" EXACT [FMA:62051] synonym: "supraoptic commissure of Meynert" EXACT [] synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051] xref: FMA:62051 xref: NIF_GrossAnatomy:birnlex_1433 is_a: UBERON:0001020 ! commissure [Term] id: UBERON:0002698 name: preoccipital notch namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1436-FMA_83739 synonym: "incisura parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436] synonym: "incisura praeoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436] synonym: "incisura preoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436] synonym: "occipital notch" EXACT [FMA:83739] synonym: "preoccipital incisura" EXACT [FMA:83739] synonym: "preoccipital incisure" EXACT [FMA:83739] xref: FMA:83739 xref: NIF_GrossAnatomy:birnlex_1436 xref: SCTID:369229005 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002699 name: supraopticohypophysial tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1440-FMA_62054 synonym: "supra-opticohypophysial tract" EXACT [FMA:62054] synonym: "supraopticohypophyseal tract" EXACT [FMA:62054] synonym: "tractus supraopticohypophysialis" EXACT [FMA:62054, FMA:TA] xref: FMA:62054 xref: NIF_GrossAnatomy:birnlex_1440 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002700 name: subcuneiform nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1441-FMA_72428 synonym: "subcuneiform area of midbrain" EXACT [FMA:72428] xref: FMA:72428 xref: NIF_GrossAnatomy:birnlex_1441 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002701 name: anterior median oculomotor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1445-FMA_72423 synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423] xref: FMA:72423 xref: NIF_GrossAnatomy:birnlex_1445 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002702 name: middle frontal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1451-FMA_61859 def: "The middle frontal gyrus makes up about one-third of the frontal lobe of the human brain. (A gyrus is one of the prominent 'bumps' or 'ridges' on the surface of the human brain. ) The middle frontal gyrus, like the inferior frontal gyrus and the superior frontal gyrus, is more of a region than a true gyrus. The borders of the middle frontal gyrus are the inferior frontal sulcus below; the superior frontal sulcus above; and the precentral sulcus behind. [WP,unvetted]." [Wikipedia:Middle_frontal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gyrus frontalis medialis" EXACT [FMA:61859, FMA:TA] synonym: "intermediate frontal gyrus" EXACT [FMA:61859] synonym: "medial frontal gyrus" EXACT [FMA:61859] xref: BTO:0004834 xref: FMA:61859 xref: NIF_GrossAnatomy:birnlex_1451 xref: SCTID:362332009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Middle_frontal_gyrus.png/200px-Middle_frontal_gyrus.png xref: ncithesaurus:Middle_Frontal_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002703 name: precentral gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1455-FMA_61894 def: "The primary motor cortex (or M1) is a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). [WP,unvetted]." [Wikipedia:Precentral_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "precentral convolution" EXACT [FMA:61894] synonym: "prerolandic gyrus" EXACT [FMA:61894] xref: EFO:0001373 xref: FMA:61894 xref: NIF_GrossAnatomy:birnlex_1455 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png xref: ncithesaurus:Precentral_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002704 name: metathalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1461-FMA_62023 def: "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]." [Wikipedia:Metathalamus] comment: note we follow FMA in making this a subtype of nucleus, but in fact it is a group containing two nuclei subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023] synonym: "nuclei metathalami" EXACT [NIF_GrossAnatomy:birnlex_1461] xref: ABA:GENd xref: EV:0100217 xref: FMA:62023 xref: MA:0000868 xref: NIF_GrossAnatomy:birnlex_1461 xref: SCTID:361550004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0004703 ! dorsal thalamus property_value: "spatially_disjoint_from" UBERON:0002144 property_value: "spatially_disjoint_from" UBERON:0002776 [Term] id: UBERON:0002705 name: midline nuclear group namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1462-FMA_62020 def: "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]." [Wikipedia:Midline_nuclear_group] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "median nuclei of thalamus" EXACT [FMA:62020] synonym: "midline nuclear group" EXACT [FMA:62020] synonym: "midline nuclear group of thalamus" EXACT [FMA:62020] synonym: "midline nuclei of thalamus" EXACT [FMA:62020] synonym: "midline thalamic group" EXACT [MA:0000864] synonym: "nuclei mediani (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1462] synonym: "nuclei mediani thalami" EXACT [FMA:62020, FMA:TA] synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020] xref: ABA:MTN xref: BTO:0002454 xref: FMA:62020 xref: MA:0000864 xref: NIF_GrossAnatomy:birnlex_1462 xref: SCTID:279163002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: UBERON:0002706 name: posterior nucleus of hypothalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1463-FMA_62350 synonym: "area hypothalamica posterior" EXACT [FMA:62350, FMA:TA] synonym: "nucleus posterior hypothalami" RELATED [BTO:0002461] synonym: "posterior hypothalamic area" EXACT [FMA:62350] synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350] xref: ABA:PH xref: BM:Die-Hy-HPA xref: BTO:0002461 xref: EV:0100235 xref: FMA:62350 xref: NIF_GrossAnatomy:birnlex_1463 xref: SCTID:362385002 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0001935 property_value: "spatially_disjoint_from" UBERON:0002035 property_value: "spatially_disjoint_from" UBERON:0002206 property_value: "spatially_disjoint_from" UBERON:0002634 [Term] id: UBERON:0002707 name: pyramidal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1464-FMA_72634 def: "The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]." [Wikipedia:Pyramidal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BM:Me-PyT xref: FMA:72634 xref: GAID:702 xref: MESH:A.08.186.854.633 xref: NIF_GrossAnatomy:birnlex_1464 xref: SCTID:362325000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002708 name: posterior periventricular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1466-FMA_62349 synonym: "nucleus periventricularis posterior" RELATED [BTO:0002479] synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349] synonym: "posterior periventricular hypothalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1466] synonym: "posterior periventricular nucleus" EXACT [FMA:62349] synonym: "posterior periventricular nucleus of hypothalamus" EXACT [FMA:62349] xref: BTO:0002479 xref: FMA:62349 xref: NIF_GrossAnatomy:birnlex_1466 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002709 name: posterior nuclear complex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1467-FMA_62024 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "nuclei posteriores thalami" EXACT [NIF_GrossAnatomy:birnlex_1467] synonym: "posterior complex of thalamus" EXACT [FMA:62024] synonym: "posterior nuclear complex" EXACT [FMA:62024] synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024] synonym: "posterior nuclear group of thalamus" EXACT [FMA:62024] synonym: "posterior thalamic nuclear group" EXACT [FMA:62024] synonym: "posterior thalamic nucleus" RELATED [BTO:0002462] xref: ABA:PO xref: BTO:0002462 xref: FMA:62024 xref: NIF_GrossAnatomy:birnlex_1467 xref: SCTID:424395006 xref: ZFA:0000325 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus property_value: "spatially_disjoint_from" UBERON:0002983 property_value: "spatially_disjoint_from" UBERON:0003033 [Term] id: UBERON:0002710 name: cingulate sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1468-FMA_83748 def: "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]." [Wikipedia:Cingulate_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "calloso-marginal sulcus" EXACT [FMA:83748] synonym: "callosomarginal fissure" EXACT [FMA:83748] synonym: "callosomarginal sulcus" EXACT [FMA:83748] synonym: "cingulate fissure" EXACT [FMA:83748] synonym: "sulcus callosomarginalis" EXACT [NIF_GrossAnatomy:birnlex_1468] synonym: "sulcus cingulatus" EXACT [NIF_GrossAnatomy:birnlex_1468] synonym: "sulcus cinguli" EXACT [NIF_GrossAnatomy:birnlex_1468] xref: BM:Tel-Cx-CGS xref: FMA:83748 xref: NIF_GrossAnatomy:birnlex_1468 xref: SCTID:279350000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray727_cingulate_sulcus.svg/200px-Gray727_cingulate_sulcus.svg.png is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002711 name: nucleus of posterior commissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1470-FMA_68463 synonym: "posterior commissure nucleus" EXACT [FMA:68463] xref: ABA:NPC xref: BM:NPC xref: FMA:68463 xref: NIF_GrossAnatomy:birnlex_1470 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0002565 property_value: "spatially_disjoint_from" UBERON:0002996 property_value: "spatially_disjoint_from" UBERON:0006848 [Term] id: UBERON:0002712 name: premammillary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1473-FMA_62348 synonym: "premammillary nuclei" EXACT [FMA:62348] xref: FMA:62348 xref: NIF_GrossAnatomy:birnlex_1473 is_a: UBERON:0002789 ! regional part of posterior hypothalamic region is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:0002770 ! posterior hypothalamic region [Term] id: UBERON:0002713 name: circular sulcus of insula namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1475-FMA_83753 def: "A marginal sulcus that is part of a insula [Obol]." [OBOL:automatic] synonym: "central lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal sulcus" EXACT [OBOL:automatic] synonym: "circular fissure" EXACT [FMA:83753] synonym: "circular sulcus (of reil)" EXACT [] synonym: "circuminsular sulcus" EXACT [FMA:83753] synonym: "ciruclar insular sulcus" EXACT [NIF_GrossAnatomy:birnlex_1475] synonym: "cortex of island marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal sulcus" EXACT [OBOL:automatic] synonym: "insula marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula marginal sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal sulcus" EXACT [OBOL:automatic] synonym: "limiting fissure" EXACT [FMA:83753] synonym: "marginal branch of cingulate sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insula" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of island of reil" EXACT [OBOL:automatic] synonym: "marginal insular sulcus" EXACT [NIF_GrossAnatomy:birnlex_1475] synonym: "marginal ramus of cingulate sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insula" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of island of reil" EXACT [OBOL:automatic] synonym: "marginal sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal sulcus of insula" EXACT [FMA:83753] synonym: "marginal sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal sulcus of island of reil" EXACT [OBOL:automatic] synonym: "sulcus circularis insulae" EXACT [NIF_GrossAnatomy:birnlex_1475] synonym: "sulcus marginalis insulae" EXACT [NIF_GrossAnatomy:birnlex_1475] xref: FMA:83753 xref: NIF_GrossAnatomy:birnlex_1475 is_a: UBERON:0002912 ! marginal sulcus [Term] id: UBERON:0002714 name: rubrospinal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1476-FMA_72640 def: "long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]." [Wikipedia:Rubrospinal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "monakow's tract" EXACT [FMA:72640] synonym: "rubrospinal tract (monakow)" EXACT [NIF_GrossAnatomy:birnlex_1476] xref: FMA:72640 xref: NIF_GrossAnatomy:birnlex_1476 xref: SCTID:369264001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002715 name: spinal trigeminal tract of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1477-FMA_72625 xref: FMA:72625 xref: NIF_GrossAnatomy:birnlex_1477 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002716 name: collateral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1480-FMA_83751 def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [Wikipedia:Collateral_fissure] comment: AO notes: cnit has two distinct classes; FMA and NIF treat these as exact synonyms. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "collateral fissure" EXACT [FMA:83751] synonym: "sulcus collateralis" EXACT [NIF_GrossAnatomy:birnlex_1480] xref: FMA:83751 xref: NIF_GrossAnatomy:birnlex_1480 xref: SCTID:279356006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray738.png/200px-Gray738.png xref: ncithesaurus:Collateral_Fissure xref: ncithesaurus:Collateral_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002717 name: rostral interstitial nucleus of medial longitudinal fasciculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1481-FMA_72433 def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "rostral interstitial nucleus of mlf" EXACT [] xref: FMA:72433 xref: NIF_GrossAnatomy:birnlex_1481 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Gray710.png/200px-Gray710.png is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002718 name: solitary tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1483-FMA_72619 def: "The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]." [Wikipedia:Solitary_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "respiratory bundle of Gierke" EXACT [] xref: BM:Me-ST xref: FMA:72619 xref: NIF_GrossAnatomy:birnlex_1483 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002719 name: spino-olivary tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1484-FMA_72643 def: "The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]." [Wikipedia:Spino-olivary_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "helweg's tract" EXACT [FMA:72643] xref: FMA:72643 xref: NIF_GrossAnatomy:birnlex_1484 xref: SCTID:362607001 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002720 name: mammillary peduncle namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1486-FMA_62061 synonym: "peduncle of mammillary body" EXACT [FMA:62061] xref: FMA:62061 xref: NIF_GrossAnatomy:birnlex_1486 xref: SCTID:369146004 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002721 name: lateral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1487-FMA_77801 def: "The lateral sulcus (also called Sylvian fissure or lateral fissure) is one of the most prominent structures of the human brain. [WP,unvetted]." [Wikipedia:Lateral_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fissura lateralis" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "fissura lateralis cerebri" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "fissura lateralis cerebri (sylvii)" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "fissura transversa cerebri" EXACT [FMA:77801, FMA:TA] synonym: "fissure of sylvius" EXACT [] synonym: "lateral cerebral fissure" EXACT [FMA:77801] synonym: "lateral cerebral sulcus" EXACT [FMA:77801] synonym: "lateral fissure" EXACT [FMA:77801] synonym: "lateral fissure of sylvius" EXACT [] synonym: "sulcus lateralis" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "sulcus lateralis cerebri" EXACT [FMA:77801, FMA:TA] synonym: "sylvian fissure" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "transverse cerebral fissure" EXACT [FMA:77801] xref: BM:Tel-Cx-LS xref: FMA:77801 xref: NIF_GrossAnatomy:birnlex_1487 xref: ncithesaurus:Fissure_of_Sylvius is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002722 name: trochlear nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1488-FMA_54518 def: "The nucleus of the trochlear nerve is located in the midbrain, at the level of the inferior colliculus. It is a motor nucleus, so located near the midline. Oddly, fibers from the trochlear nucleus cross over in the midbrain at the superior medullary velum and exit posteriorly, (this is the only cranial nerve to do so). The nerve then goes around the midbrain, and is visible coming out the sides. [WP,unvetted]." [Wikipedia:Trochlear_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518] synonym: "motor nucleus IV" EXACT [ZFA:0000450] synonym: "nIV" EXACT [ZFA:0000450] synonym: "nucleus nervi trochlearis" EXACT [FMA:54518, FMA:TA] synonym: "nucleus of trochlear nerve" EXACT [FMA:54518] synonym: "trochlear IV nucleus" EXACT [MA:0001075] synonym: "trochlear motor nucleus" EXACT [ZFA:0000450] xref: ABA:IV xref: BM:MB-IV xref: EV:0100251 xref: FMA:54518 xref: MA:0001075 xref: NIF_GrossAnatomy:birnlex_1488 xref: SCTID:280163001 xref: ZFA:0000450 xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002995 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0002723 name: mammillary princeps fasciculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1492-FMA_62057 synonym: "principal mammillary fasciculus" EXACT [FMA:62057] synonym: "principal mammillary tract" EXACT [NIF_GrossAnatomy:birnlex_1492] synonym: "principle mamillary fasciculus" EXACT [FMA:62057] xref: FMA:62057 xref: NIF_GrossAnatomy:birnlex_1492 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002724 name: limen of insula namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1493-FMA_75266 synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266] synonym: "gyrus ambiens (noback)" EXACT [NIF_GrossAnatomy:birnlex_1493] synonym: "insula limen" EXACT [FMA:75266] synonym: "limen insulae" EXACT [NIF_GrossAnatomy:birnlex_1493] xref: FMA:75266 xref: NIF_GrossAnatomy:birnlex_1493 xref: SCTID:369215009 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002725 name: mammillotegmental fasciculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1497-FMA_62058 synonym: "gudden tract" EXACT [FMA:62058] synonym: "mammillotegmental tract" EXACT [FMA:62058] synonym: "mammillotegmental tract of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_1497] synonym: "von Gudden's tract" EXACT [FMA:62058] xref: FMA:62058 xref: NIF_GrossAnatomy:birnlex_1497 xref: SCTID:369140005 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002726 name: cervical spinal cord namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1499-FMA_71166 synonym: "cervical segment of spinal cord" EXACT [FMA:71166] synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166] synonym: "cervical spinal cord" EXACT [FMA:71166] synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT [FMA:71166, FMA:TA] xref: FMA:71166 xref: NIF_GrossAnatomy:birnlex_1499 xref: SCTID:180960003 xref: ncithesaurus:Cervical_Spinal_Cord is_a: UBERON:0005844 ! spinal cord segment [Term] id: UBERON:0002727 name: medial medullary lamina namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1501-FMA_62470 synonym: "inner medullary lamina" EXACT [FMA:62470] synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470] synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470] synonym: "lamina medullaris interna corporis striati" EXACT [FMA:62470, FMA:TA] synonym: "lamina medullaris medialis corporis striati" EXACT [FMA:62470, FMA:TA] synonym: "medial medullary lamina" EXACT [FMA:62470] synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "medial medullary lamina of globus pallidus" EXACT [FMA:62470] synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470] synonym: "medial medullary stria" EXACT [FMA:62470] xref: BTO:0002251 xref: FMA:62470 xref: NIF_GrossAnatomy:birnlex_1501 xref: SCTID:369205003 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002728 name: entorhinal area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1508-FMA_72356 def: "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)." [NIF_GrossAnatomy:birnlex_1508, Wikipedia:Entorhinal_cortex] comment: todo - check area vs complex. ABA:ENT this is part of the hippocampal formation via retrohippocampal region subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Brodmann's area 28" RELATED [BTO:0002650] synonym: "entorhinal cortex" EXACT [NIF_GrossAnatomy:birnlex_1508] xref: ABA:ENT xref: BM:Tel-Cx-ENT xref: BTO:0002650 xref: BTO:0004345 xref: EFO:0001920 xref: FMA:72356 xref: GAID:636 xref: MESH:A.08.186.211.577.710.225 xref: NIF_GrossAnatomy:birnlex_1508 xref: SCTID:369099007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002973 ! parahippocampal gyrus relationship: part_of UBERON:0004725 ! piriform cortex property_value: "spatially_disjoint_from" UBERON:0001953 property_value: "spatially_disjoint_from" UBERON:0002191 property_value: "spatially_disjoint_from" UBERON:0004683 [Term] id: UBERON:0002729 name: claustral amygdaloid area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1515-FMA_61869 synonym: "claustrum diffusa" EXACT [FMA:61869] synonym: "claustrum parvum" EXACT [FMA:61869] synonym: "ventral claustrum" EXACT [FMA:61869] synonym: "ventral portion of claustrum" EXACT [FMA:61869] xref: FMA:61869 xref: NIF_GrossAnatomy:birnlex_1515 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002730 name: regional part of thalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1517-FMA_67705 def: "A regional part of brain that is part of a thalamus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of thalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "biological structure of brain of thalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of dorsal thalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "brain anatomical structure of thalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of dorsal thalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "brain biological structure of thalamus" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) anatomical structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) biological structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) brain anatomical structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) brain biological structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) neuraxis segment" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) regional part of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) segment of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus brain biological structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "dorsal thalamus regional part of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of dorsal thalamus" EXACT [OBOL:automatic] synonym: "neuraxis segment of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "neuraxis segment of thalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "regional part of brain of thalamus" EXACT [OBOL:automatic] synonym: "segment of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "segment of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "segment of brain of thalamus" EXACT [OBOL:automatic] synonym: "segment of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1517] synonym: "thalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "thalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "thalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "thalamus brain biological structure" EXACT [OBOL:automatic] synonym: "thalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "thalamus regional part of brain" EXACT [OBOL:automatic] synonym: "thalamus segment" EXACT [FMA:67705] synonym: "thalamus segment of brain" EXACT [OBOL:automatic] xref: FMA:67705 xref: NIF_GrossAnatomy:birnlex_1517 is_a: UBERON:0002784 ! regional part of diencephalon [Term] id: UBERON:0002731 name: vestibulocochlear nerve root namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1519-FMA_72499 synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499] synonym: "statoacoustic nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499] synonym: "vestibulocochlear nerve tract" EXACT [FMA:72499] xref: FMA:72499 xref: NIF_GrossAnatomy:birnlex_1519 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002732 name: longitudinal pontine fibers namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1523-FMA_72513 synonym: "fibrae pontis longitudinales" EXACT [FMA:72513, FMA:TA] synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513] synonym: "longitudinal pontine fibers" EXACT [FMA:72513] synonym: "longitudinal pontine fibres" EXACT [FMA:72513] synonym: "longitudinal pontine tract" EXACT [FMA:72513] xref: FMA:72513 xref: NIF_GrossAnatomy:birnlex_1523 xref: SCTID:361544009 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002733 name: intralaminar nuclear group namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1530-FMA_62021 def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [Wikipedia:Intralaminar_thalamic_nuclei] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "intralaminar nuclear group" EXACT [FMA:62021] synonym: "intralaminar nuclear group of thalamus" EXACT [FMA:62021] synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021] synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021] synonym: "nonspecific thalamic system" EXACT [FMA:62021] synonym: "nuclei intralaminares (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1530] synonym: "nuclei intralaminares thalami" EXACT [FMA:62021, FMA:TA] xref: ABA:ILM xref: FMA:62021 xref: GAID:660 xref: MESH:A.08.186.211.730.385.826.701.460 xref: NIF_GrossAnatomy:birnlex_1530 xref: SCTID:279159009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Thalmus.png/200px-Thalmus.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus property_value: "spatially_disjoint_from" UBERON:0001899 property_value: "spatially_disjoint_from" UBERON:0001903 property_value: "spatially_disjoint_from" UBERON:0002736 [Term] id: UBERON:0002734 name: superior temporal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1534-FMA_83783 synonym: "parallel sulcus" EXACT [FMA:83783] synonym: "sulcus t1" EXACT [FMA:83783] synonym: "superior temporal fissure" EXACT [FMA:83783] xref: BM:Tel-Cx-STS xref: FMA:83783 xref: NIF_GrossAnatomy:birnlex_1534 xref: SCTID:279344005 xref: ncithesaurus:Superior_Temporal_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002735 name: transverse pontine fibers namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1535-FMA_72514 synonym: "fibrae pontis transversae" EXACT [FMA:72514, FMA:TA] synonym: "superficial transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse pontine fibers" EXACT [FMA:72514] synonym: "transverse pontine fibres" EXACT [FMA:72514] synonym: "transverse pontine tract" EXACT [FMA:72514] xref: FMA:72514 xref: NIF_GrossAnatomy:birnlex_1535 xref: SCTID:79836003 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002736 name: lateral nuclear group namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1537-FMA_62174 def: "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]." [Wikipedia:Lateral_nuclear_group] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral group of the dorsal thalamus" EXACT [NIF_GrossAnatomy:birnlex_1537] synonym: "lateral nuclear group" EXACT [FMA:62174] synonym: "lateral nuclear group of thalamus" EXACT [FMA:62174] synonym: "lateral nucleus of thalamus" EXACT [FMA:62174] synonym: "lateral thalamic nuclei" EXACT [FMA:62174] synonym: "lateral thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1537] synonym: "nuclei laterales thalami" EXACT [NIF_GrossAnatomy:birnlex_1537] synonym: "nucleus lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1537] xref: ABA:LAT xref: EV:0100210 xref: FMA:62174 xref: GAID:661 xref: MESH:A.08.186.211.730.385.826.701.485 xref: NIF_GrossAnatomy:birnlex_1537 xref: SCTID:279126006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus property_value: "spatially_disjoint_from" UBERON:0001899 property_value: "spatially_disjoint_from" UBERON:0001903 property_value: "spatially_disjoint_from" UBERON:0002733 [Term] id: UBERON:0002737 name: lateral inferior limiting sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1540-FMA_74523 xref: FMA:74523 xref: NIF_GrossAnatomy:birnlex_1540 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002738 name: isthmus of cingulate gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1541-FMA_62502 synonym: "cingulate gyrus isthmus" EXACT [FMA:62502] synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502] synonym: "isthmus of limbic lobe" EXACT [FMA:62502] xref: FMA:62502 xref: NIF_GrossAnatomy:birnlex_1541 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002967 ! cingulate gyrus [Term] id: UBERON:0002739 name: medial dorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1543-FMA_62156 def: "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the GC6ttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]." [Wikipedia:Medial_dorsal_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156] synonym: "dorsomedial nuclear group" EXACT [FMA:62156] synonym: "dorsomedial nucleus" EXACT [FMA:62156] synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156] synonym: "medial dorsal nucleus" EXACT [FMA:62156] synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156] synonym: "medial dorsal thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1543] synonym: "medial nuclear group" EXACT [FMA:62156] synonym: "medial nuclear group of thalamus" EXACT [FMA:62156] synonym: "medial thalamic nuclei" EXACT [FMA:62156] synonym: "medial thalamic nucleus" EXACT [FMA:62156] synonym: "mediodorsal nucleus" EXACT [FMA:62156] synonym: "mediodorsal nucleus of thalamus" EXACT [DHB:MD] synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156] synonym: "nucleus dorsomedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1543] synonym: "nucleus medialis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1543] synonym: "nucleus mediodorsalis thalami" RELATED [BTO:0002453] xref: ABA:MD xref: BM:Die-Th-MD xref: BTO:0002453 xref: EV:0100200 xref: FMA:62156 xref: GAID:663 xref: MESH:A.08.186.211.730.385.826.701.490 xref: NIF_GrossAnatomy:birnlex_1543 xref: SCTID:279149008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: ncithesaurus:Dorsomedial_Nucleus_of_the_Thalamus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus property_value: "spatially_disjoint_from" UBERON:0003031 [Term] id: UBERON:0002740 name: posterior cingulate gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1546-FMA_61924 def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [Wikipedia:Posterior_cingulate_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:61924 xref: NIF_GrossAnatomy:birnlex_1546 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus [Term] id: UBERON:0002741 name: diagonal band namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1551-FMA_61973 def: "The diagonal band of Broca consists of fibers that are said to arise in the parolfactory area, the gyrus subcallosus and the anterior perforated substance, and course backward in the longitudinal striae to the dentate gyrus and the hippocampal region. This is a cholinergic bundle of nerve fibers posterior to the anterior perforated substance. It interconnects the paraterminal gyrus in the septal area with the hippocampus and lateral olfactory area. Along with the Septum Pellucidum the Diagonal Band of Broca is believed to be involved in the generation of theta waves in the hippocampus. [WP,unvetted]." [Wikipedia:Diagonal_band_of_Broca] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "band of Broca" RELATED [BTO:0002445] synonym: "bandaletta diagonalis (Broca)" RELATED [BTO:0002445] synonym: "broca's diagonal band" EXACT [FMA:61973] synonym: "broca's diagonal gyrus" EXACT [FMA:61973] synonym: "diagonal band of broca" EXACT [] synonym: "diagonal gyrus" EXACT [FMA:61973] synonym: "olfactory fasciculus" EXACT [FMA:61973] synonym: "olfactory radiations of zuckerkandl" EXACT [] synonym: "stria diagonalis" RELATED [BTO:0002445] synonym: "stria diagonalis (Broca)" RELATED [BTO:0002445] xref: BTO:0002445 xref: FMA:61973 xref: GAID:684 xref: MESH:A.08.186.211.730.885.380 xref: NIF_GrossAnatomy:birnlex_1551 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002742 name: lamina of septum pellucidum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1554-FMA_62472 def: "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy." [Wikipedia:Septum_pellucidum#Layers] comment: editor note synonym: "laminae septi pellucidi" EXACT PLURAL [] synonym: "septum pellucidum lamina" EXACT [FMA:62472] xref: FMA:62472 xref: NIF_GrossAnatomy:birnlex_1554 xref: SCTID:12164006 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0004714 ! septum pellucidum [Term] id: UBERON:0002743 name: basal forebrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1560-FMA_77700 def: "The basal forebrain is a collection of structures located ventrally to the striatum. It is considered to be the major cholinergic output of the CNS. It includes a group of structures that lie near the bottom of the front of the brain, including the nucleus basalis, diagonal band of Broca, and medial septal nuclei. These structures are important in the production of acetylcholine, which is then distributed widely throughout the brain. Acetylcholine affects the ability of brain cells to transmit information to one another, and also encourages plasticity, or learning. Thus, damage to the basal forebrain can reduce the amount of acetylcholine in the brain and impair learning. This may be one reason why basal forebrain damage can result in memory impairments such as amnesia and confabulation. One common cause of basal forebrain damage is aneurysm of the anterior communicating artery. Research, conducted by investigators from Children's Hospital Boston and the University of Helsinki, ties together previous observations about sleep and finds that nitric oxide production in the basal forebrain is both necessary and sufficient to produce sleep. This structure is defined, in part, as the place where adenosine acts on A1 receptors of cholinergic neurons. This results in hyperpolarization of cholinergic neurons, which inhibits the release of acetylcholine. Acetylcholine is known to promote wakefulness in the basal forebrain. Inhibition of acetylcholine release in the basal forebrain by adenosine causes slow wave sleep. The basal forebrain and adjacent areas are a focus for sleep research. Stimulating the basal forebrain gives rise to EEG sychrony and sleep. [WP,unvetted]." [Wikipedia:Basal_forebrain] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BM:Tel-BF xref: BTO:0002444 xref: FMA:77700 xref: NIF_GrossAnatomy:birnlex_1560 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Basal_Forebrain_Monakhos_2007.png/200px-Basal_Forebrain_Monakhos_2007.png is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002744 name: hilum of dentate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1561-FMA_72548 synonym: "dentate nuclear hilum" EXACT [FMA:72548] xref: FMA:72548 xref: NIF_GrossAnatomy:birnlex_1561 xref: SCTID:369055003 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002745 name: ventral amygdalofugal projection namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1563-FMA_61977 synonym: "ventral amygdalofugal pathway" EXACT [NIF_GrossAnatomy:birnlex_1563] xref: FMA:61977 xref: NIF_GrossAnatomy:birnlex_1563 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002746 name: intermediate periventricular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1564-FMA_62328 synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328] synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328] xref: FMA:62328 xref: NIF_GrossAnatomy:birnlex_1564 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002747 name: neodentate part of dentate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1567-FMA_72539 synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539] xref: FMA:72539 xref: NIF_GrossAnatomy:birnlex_1567 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002748 name: medial lemniscus of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1570-FMA_72621 def: "A medial lemniscus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "medulla medial lemniscus" EXACT [OBOL:automatic] xref: FMA:72621 xref: NIF_GrossAnatomy:birnlex_1570 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003002 ! medial lemniscus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002749 name: regional part of cerebellar cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1571-FMA_76924 def: "A regional part of brain that is part of a cerebellar cortex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "biological structure of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cerebellar cortex" EXACT [OBOL:automatic] synonym: "brain biological structure of cerebellar cortex" EXACT [OBOL:automatic] synonym: "cerebellar cortex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortex biological structure of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortex brain anatomical structure" EXACT [OBOL:automatic] synonym: "cerebellar cortex brain biological structure" EXACT [OBOL:automatic] synonym: "cerebellar cortex neuraxis segment" EXACT [OBOL:automatic] synonym: "cerebellar cortex regional part of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortex segment of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortical segment" EXACT [FMA:76924] synonym: "neuraxis segment of cerebellar cortex" EXACT [OBOL:automatic] synonym: "regional part of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "segment of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "segment of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1571] xref: FMA:76924 xref: NIF_GrossAnatomy:birnlex_1571 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002750 name: medial longitudinal fasciculus of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1574-FMA_72618 def: "A medial longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "medulla medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:72618 xref: NIF_GrossAnatomy:birnlex_1574 is_a: UBERON:0002309 ! medial longitudinal fasciculus is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002751 name: inferior temporal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1577-FMA_61907 def: "The inferior temporal gyrus is placed below the middle temporal sulcus, and is connected behind with the inferior occipital gyrus; it also extends around the infero-lateral border on to the inferior surface of the temporal lobe, where it is limited by the inferior sulcus. This region is one of the higher levels of the ventral stream of visual processing, associated with the representation of complex object features, such as global shape. It may also be involved in face perception. [WP,unvetted]." [Wikipedia:Inferior_temporal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gyrus temporalis inferior" EXACT [NIF_GrossAnatomy:birnlex_1577] synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: BM:Tel-ITG xref: FMA:61907 xref: NIF_GrossAnatomy:birnlex_1577 xref: SCTID:279191005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray726.png/200px-Gray726.png xref: ncithesaurus:Inferior_Temporal_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002752 name: olivocerebellar tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1579-FMA_72638 def: "The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raphC), then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]." [Wikipedia:Olivocerebellar_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:72638 xref: NIF_GrossAnatomy:birnlex_1579 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002753 name: posterior spinocerebellar tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1585-FMA_72641 def: "The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted]." [Wikipedia:Posterior_spinocerebellar_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641] synonym: "flechsig's tract" EXACT [FMA:72641] xref: BM:DSCT xref: FMA:72641 xref: NIF_GrossAnatomy:birnlex_1585 xref: SCTID:369284002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png is_a: UBERON:0001018 ! axon tract is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0005413 ! spinocerebellar tract [Term] id: UBERON:0002754 name: predorsal bundle namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1590-FMA_72614 synonym: "predorsal bundle of edinger" EXACT [] synonym: "predorsal fasciculus" EXACT [FMA:72614] synonym: "tectospinal fibers" EXACT [FMA:72614] xref: FMA:72614 xref: NIF_GrossAnatomy:birnlex_1590 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002755 name: pyramidal decussation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1594-FMA_72633 def: "When these pyramidal fibers are traced downward, it is found that some three-fifths or more of them leave the pyramids in successive bundles, and decussate in the anterior median fissure of the medulla oblongata, forming what is termed the pyramidal decussation or motor decussation. Having crossed the middle line, they pass down in the posterior part of the lateral funiculus as the lateral cerebrospinal fasciculus. [WP,unvetted]." [Wikipedia:Pyramidal_decussation] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "corticospinal decussation" EXACT [FMA:72633] synonym: "decussatio pyramidum" EXACT [FMA:72633, FMA:TA] synonym: "decussatio pyramidum medullae oblongatae" EXACT [FMA:72633, FMA:TA] synonym: "decussation of corticospinal tract" EXACT [FMA:72633] synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633] synonym: "decussation of pyramids" EXACT [FMA:72633] synonym: "decussation of pyramids of medulla" EXACT [FMA:72633] synonym: "decussation of the pyramidal tract" EXACT [NIF_GrossAnatomy:birnlex_1594] synonym: "motor decussation" EXACT [FMA:72633] synonym: "motor decussation of medulla" EXACT [FMA:72633] synonym: "pyramidal decussation (pourfour du petit)" EXACT [NIF_GrossAnatomy:birnlex_1594] xref: BM:Me-PyX xref: FMA:72633 xref: NIF_GrossAnatomy:birnlex_1594 xref: SCTID:369058001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002756 name: anterior cingulate gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1603-FMA_61916 def: "The Anterior cingulate cortex (ACC) is the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy and emotion. [WP,unvetted]." [Wikipedia:Anterior_cingulate_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:61916 xref: NIF_GrossAnatomy:birnlex_1603 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray727_anterior_cingulate_cortex.png/200px-Gray727_anterior_cingulate_cortex.png is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: part_of UBERON:0009835 ! anterior cingulate cortex [Term] id: UBERON:0002757 name: regional part of epithalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013 def: "A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of epithalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of epithalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of epithalamus" EXACT [OBOL:automatic] synonym: "epithalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "epithalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "epithalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "epithalamus brain biological structure" EXACT [OBOL:automatic] synonym: "epithalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "epithalamus regional part of brain" EXACT [OBOL:automatic] synonym: "epithalamus segment" EXACT [FMA:62013] synonym: "epithalamus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of epithalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of epithalamus" EXACT [OBOL:automatic] synonym: "segment of brain of epithalamus" EXACT [OBOL:automatic] synonym: "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607] xref: FMA:62013 xref: NIF_GrossAnatomy:birnlex_1607 is_a: UBERON:0002784 ! regional part of diencephalon [Term] id: UBERON:0002758 name: dorsal nucleus of medial geniculate body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1608-FMA_62216 synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] synonym: "medial geniculate complex, dorsal part" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "medial geniculate nucleus, dorsal part" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673] synonym: "nucleus geniculatus medialis fibrosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "nucleus geniculatus medialis pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1608] xref: ABA:MGd xref: BTO:0002673 xref: FMA:62216 xref: NIF_GrossAnatomy:birnlex_1608 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001927 ! medial geniculate body property_value: "spatially_disjoint_from" UBERON:0002759 property_value: "spatially_disjoint_from" UBERON:0002985 [Term] id: UBERON:0002759 name: magnocellular nucleus of medial geniculate body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1612-FMA_62218 synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "medial division of medial geniculate body" EXACT [FMA:62218] synonym: "medial geniculate complex, medial part" EXACT [FMA:62218] synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218] synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "nucleus geniculatus medialis, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "nucleus medialis magnocellularis corporis geniculati medialis" RELATED [BTO:0002672] xref: ABA:MGm xref: BTO:0002672 xref: FMA:62218 xref: NIF_GrossAnatomy:birnlex_1612 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001927 ! medial geniculate body property_value: "spatially_disjoint_from" UBERON:0002758 property_value: "spatially_disjoint_from" UBERON:0002985 [Term] id: UBERON:0002760 name: ventral corticospinal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1618-FMA_72636 def: "The anterior corticospinal tract (also called the ventral corticospinal tract, medial corticospinal tract, direct pyramidal tract, or anterior cerebrospinal fasciculus) is a small bundle of descending fibers that connect the cerebral cortex to the spinal cord. It is usually small, varying inversely in size with the lateral corticospinal tract, which is the main part of the corticospinal tract. It lies close to the anterior median fissure, and is present only in the upper part of the medulla spinalis; gradually diminishing in size as it descends, it ends about the middle of the thoracic region. It consists of descending fibers which arise from cells in the motor area of the cerebral hemisphere of the same side, and which, as they run downward in the medulla spinalis, cross in succession through the anterior white commissure to the opposite side, where they end, either directly or indirectly, by arborizing around the motor neurons in the anterior column. A few of its fibers are said to pass to the lateral column of the same side and to the gray matter at the base of the posterior column. They conduct voluntary motor impulses from the precentral gyrus to the motor centers of the cord. [WP,unvetted]." [Wikipedia:Ventral_corticospinal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior corticospinal tract" EXACT [FMA:72636] synonym: "anterior pyramidal tract" EXACT [FMA:72636] synonym: "anterior tract of turck" EXACT [] synonym: "bundle of turck" EXACT [] synonym: "column of turck" EXACT [] xref: FMA:72636 xref: NIF_GrossAnatomy:birnlex_1618 xref: SCTID:369092003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002761 name: inferior frontal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1619-FMA_83757 def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior frontal fissure" EXACT [FMA:83757] synonym: "sulcus f2" EXACT [FMA:83757] xref: FMA:83757 xref: NIF_GrossAnatomy:birnlex_1619 xref: SCTID:279343004 xref: ncithesaurus:Inferior_Frontal_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002762 name: internal medullary lamina of thalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1621-FMA_62079 synonym: "internal medullary lamina" EXACT [FMA:62079] synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079] synonym: "lamina medullaris medialis thalami" EXACT [FMA:62079, FMA:TA] xref: FMA:62079 xref: NIF_GrossAnatomy:birnlex_1621 xref: SCTID:369161003 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002763 name: accessory medullary lamina namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1626-FMA_62471 synonym: "accessory medullar lamina of pallidum" EXACT [NIF_GrossAnatomy:birnlex_1626] synonym: "accessory medullary lamina" EXACT [FMA:62471] synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471] synonym: "accessory medullary lamina of globus pallidus" EXACT [FMA:62471] synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471] synonym: "lamina medullaris accessoria corporis striati" EXACT [FMA:62471, FMA:TA] xref: FMA:62471 xref: NIF_GrossAnatomy:birnlex_1626 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002764 name: inferior precentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1627-FMA_83764 synonym: "inferior part of precentral fissure" EXACT [FMA:83764] synonym: "sulcus praecentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1627] synonym: "sulcus precentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1627] xref: FMA:83764 xref: NIF_GrossAnatomy:birnlex_1627 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002765 name: lateral medullary lamina namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1634-FMA_62469 synonym: "external medulary lamina of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "external medulary lamina of lentiform nucleus" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469] synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469] synonym: "lamina medullaris externa corporis striati" EXACT [FMA:62469, FMA:TA] synonym: "lamina medullaris lateralis corporis striati" EXACT [FMA:62469, FMA:TA] synonym: "lateral medulary lamina of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "lateral medulary stria" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "lateral medullary lamina" EXACT [FMA:62469] synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "lateral medullary lamina of globus pallidus" EXACT [FMA:62469] synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469] synonym: "lateral medullary stria" EXACT [FMA:62469] synonym: "medulary lamina of pallidum" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "outer medulary lamina" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "outer medullary lamina" EXACT [FMA:62469] xref: FMA:62469 xref: NIF_GrossAnatomy:birnlex_1634 xref: SCTID:369204004 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002766 name: fusiform gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1641-FMA_61908 def: "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]." [Wikipedia:Fusiform_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gyrus occipitotemporalis lateralis" EXACT [FMA:61908, FMA:TA] synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908] synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT [] synonym: "occipitotemporal gyrus" EXACT [FMA:61908] xref: FMA:61908 xref: NIF_GrossAnatomy:birnlex_1641 xref: SCTID:110678003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002767 name: inferior rostral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1642-FMA_83767 synonym: "sulcus rostralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1642] xref: FMA:83767 xref: NIF_GrossAnatomy:birnlex_1642 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002768 name: vestibulospinal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1643-FMA_72646 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [Wikipedia:Vestibulospinal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "vestibulo-spinal tract" EXACT [ZFA:0000709] xref: FMA:72646 xref: NIF_GrossAnatomy:birnlex_1643 xref: SCTID:369289007 xref: ZFA:0000709 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002769 name: superior temporal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1648-FMA_61905 def: "A gyrus (plural gyri) is a bump or ridge on the surface of the brain. The superior temporal gyrus is one of three (sometimes two) gyri in the temporal lobe of the human brain. The superior temporal gyrus is bounded by: the lateral sulcus above; the superior temporal sulcus (not always present or visible) below; an imaginary line drawn from the preoccipital notch to the lateral sulcus posteriorly. The superior temporal gyrus contains several important structures of the brain, including: Brodmann areas 41 and 42, marking the location of the primary auditory cortex, the cortical region responsible for the sensation of sound; Wernicke's area, Brodmann 22p, an important region for the processing of speech so that it can be understood as language. [WP,unvetted]." [Wikipedia:Superior_temporal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gyrus temporalis superior" EXACT [NIF_GrossAnatomy:birnlex_1648] xref: BM:Tel-STG xref: EFO:0001944 xref: FMA:61905 xref: NIF_GrossAnatomy:birnlex_1648 xref: SCTID:362345008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Superior_temporal_gyrus.png/200px-Superior_temporal_gyrus.png xref: ncithesaurus:Superior_Temporal_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002770 name: posterior hypothalamic region namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1651-FMA_62029 synonym: "mammillary level of hypothalamus" EXACT [FMA:62029] synonym: "mammillary region" EXACT [FMA:62029] synonym: "posterior hypothalamus" EXACT [FMA:62029] xref: FMA:62029 xref: GAID:651 xref: MESH:A.08.186.211.730.385.357.362 xref: NIF_GrossAnatomy:birnlex_1651 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002771 name: middle temporal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1653-FMA_61906 def: "Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]." [Wikipedia:Middle_temporal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gyrus temporalis medius" EXACT [NIF_GrossAnatomy:birnlex_1653] synonym: "intermediate temporal gyrus" EXACT [FMA:61906] synonym: "medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus] xref: EFO:0002466 xref: FMA:61906 xref: NIF_GrossAnatomy:birnlex_1653 xref: SCTID:279190006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/WOROI_60_loc.png/200px-WOROI_60_loc.png xref: ncithesaurus:Middle_Temporal_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002772 name: olfactory sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1655-FMA_83769 def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "olfactory groove" EXACT [NIF_GrossAnatomy:birnlex_1655] synonym: "sulcus olfactorius" EXACT [NIF_GrossAnatomy:birnlex_1655] xref: BM:Tel-Cx-OFS xref: FMA:83769 xref: NIF_GrossAnatomy:birnlex_1655 xref: SCTID:279358007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray729_olfactory_sulcus.png/200px-Gray729_olfactory_sulcus.png xref: ncithesaurus:Olfactory_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002773 name: anterior transverse temporal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1657-FMA_61909 synonym: "anterior transverse convolution of heschl" EXACT [NIF_GrossAnatomy:birnlex_1657] synonym: "anterior transverse temporal convolution of heschl" EXACT [] synonym: "first transverse gyrus of heschl" EXACT [] synonym: "great transverse gyrus of heschl" EXACT [] xref: FMA:61909 xref: NIF_GrossAnatomy:birnlex_1657 xref: SCTID:279192003 is_a: UBERON:0003939 ! transverse gyrus of Heschl [Term] id: UBERON:0002774 name: posterior transverse temporal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1661-FMA_61910 synonym: "posterior transverse convolution of heschl" EXACT [NIF_GrossAnatomy:birnlex_1661] synonym: "posterior transverse temporal convolution of heschl" EXACT [] xref: FMA:61910 xref: NIF_GrossAnatomy:birnlex_1661 xref: SCTID:279193008 is_a: UBERON:0003939 ! transverse gyrus of Heschl [Term] id: UBERON:0002775 name: olivocochlear bundle namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1666-FMA_72485 synonym: "bundle of rasmussen" EXACT [] synonym: "efferent cochlear bundle" EXACT [FMA:72485] synonym: "olivocochlear bundle of rasmussen" EXACT [] synonym: "olivocochlear tract" EXACT [FMA:72485] synonym: "tractus olivocochlearis" EXACT [FMA:72485, FMA:TA] xref: FMA:72485 xref: NIF_GrossAnatomy:birnlex_1666 xref: SCTID:369030009 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002776 name: ventral nuclear group namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1669-FMA_62022 def: "The ventral nuclear group is a collection of nuclei on the ventral side of the thalamus. According to MeSH, it consists of the following: ventral anterior nucleus ventral lateral nucleus ventral posterior nucleus [WP,unvetted]." [Wikipedia:Ventral_nuclear_group] comment: Editors note: consider splitting nucleus from nuclear group subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nuclei ventrales thalami" EXACT [NIF_GrossAnatomy:birnlex_1669] synonym: "ventral group of dorsal thalamus" EXACT [NIF_GrossAnatomy:birnlex_1669] synonym: "ventral nuclear group" EXACT [FMA:62022] synonym: "ventral nuclear group of thalamus" EXACT [FMA:62022] synonym: "ventral nuclear mass" EXACT [FMA:62022] synonym: "ventral nuclei of thalamus" EXACT [FMA:62022] synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022] xref: ABA:VENT xref: BTO:0002467 xref: EV:0100206 xref: FMA:62022 xref: NIF_GrossAnatomy:birnlex_1669 xref: SCTID:279125005 xref: ZFA:0005576 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus relationship: part_of UBERON:0001900 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! subthalamus property_value: "spatially_disjoint_from" UBERON:0002144 property_value: "spatially_disjoint_from" UBERON:0002704 [Term] id: UBERON:0002777 name: neostriatum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1672-FMA_77617 is_obsolete: true subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BTO:0000418 xref: FMA:77617 xref: GAID:669 xref: NIF_GrossAnatomy:birnlex_1672 [Term] id: UBERON:0002778 name: ventral pallidum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1674-FMA_77613 def: "Part of the globus pallidus, consistingo of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM)." [NIF_GrossAnatomy:birnlex_1674] synonym: "ventral globus pallidus" RELATED [BTO:0004375] synonym: "ventral pallidum" EXACT [NIF_GrossAnatomy:birnlex_1674] xref: ABA:PALv xref: BM:Tel-VPa xref: BTO:0004375 xref: FMA:77613 xref: NIF_GrossAnatomy:birnlex_1674 is_a: UBERON:0006514 ! pallidum relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002779 name: lateral superior olivary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1675-FMA_72472 def: "In anatomy, the olivary bodies or simply olives (Latin oliva and olivae, singular and plural, respectively) are a pair of prominent oval structures in the medulla oblongata, the lower portion of the brainstem. They contain the olivary nuclei. [WP,unvetted]." [Wikipedia:Accessory_olivary_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "accessory olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olive" EXACT [FMA:72472] synonym: "lateral superior olive" EXACT [FMA:72472] synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472] xref: BM:Pons-SOL xref: FMA:72472 xref: NIF_GrossAnatomy:birnlex_1675 xref: SCTID:360477003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png is_a: UBERON:0007247 ! superior olivary nucleus [Term] id: UBERON:0002780 name: regional part of forebrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996 def: "A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of forebrain" EXACT [OBOL:automatic] synonym: "biological structure of brain of forebrain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of forebrain" EXACT [OBOL:automatic] synonym: "brain biological structure of forebrain" EXACT [OBOL:automatic] synonym: "forebrain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "forebrain biological structure of brain" EXACT [OBOL:automatic] synonym: "forebrain brain anatomical structure" EXACT [OBOL:automatic] synonym: "forebrain brain biological structure" EXACT [OBOL:automatic] synonym: "forebrain neuraxis segment" EXACT [OBOL:automatic] synonym: "forebrain regional part of brain" EXACT [OBOL:automatic] synonym: "forebrain segment" EXACT [FMA:61996] synonym: "forebrain segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of forebrain" EXACT [OBOL:automatic] synonym: "regional part of brain of forebrain" EXACT [OBOL:automatic] synonym: "segment of brain of forebrain" EXACT [OBOL:automatic] synonym: "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677] xref: FMA:61996 xref: NIF_GrossAnatomy:birnlex_1677 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002781 name: caudal part of ventral posterolateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1681-FMA_62206 synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT [] synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206] synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206] xref: FMA:62206 xref: NIF_GrossAnatomy:birnlex_1681 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002782 name: medial superior olivary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1682-FMA_72473 def: "The superior olivary complex (or SOC or superior olive) is a small mass of gray substance situated on the dorsal surface of the lateral part of the trapezoid body. Small in humans, but well developed in certain animals, it exhibits similar structure as the inferior olivary nucleus, and is situated immediately above it. Some of the fibers of the trapezoid body end by arborizing around the cells of this nucleus, while others arise from these cells. [WP,unvetted]." [Wikipedia:Medial_superior_olive] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "chief nucleus of superior olive" EXACT [FMA:72473] synonym: "chief superior olivary nucleus" EXACT [FMA:72473] synonym: "main superior olivary nucleus" EXACT [FMA:72473] synonym: "medial superior olive" EXACT [FMA:72473] synonym: "nucleus laminaris" EXACT [NIF_GrossAnatomy:birnlex_1682] synonym: "principal superior olivary nucleus" EXACT [FMA:72473] synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473] xref: BM:Pons-SOM xref: FMA:72473 xref: NIF_GrossAnatomy:birnlex_1682 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png is_a: UBERON:0007247 ! superior olivary nucleus [Term] id: UBERON:0002783 name: central tegmental tract of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1683-FMA_72494 xref: FMA:72494 xref: NIF_GrossAnatomy:birnlex_1683 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002784 name: regional part of diencephalon namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005 def: "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of between brain" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of interbrain" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "between brain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "between brain biological structure of brain" EXACT [OBOL:automatic] synonym: "between brain brain anatomical structure" EXACT [OBOL:automatic] synonym: "between brain brain biological structure" EXACT [OBOL:automatic] synonym: "between brain neuraxis segment" EXACT [OBOL:automatic] synonym: "between brain regional part of brain" EXACT [OBOL:automatic] synonym: "between brain segment of brain" EXACT [OBOL:automatic] synonym: "biological structure of brain of between brain" EXACT [OBOL:automatic] synonym: "biological structure of brain of diencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of interbrain" EXACT [OBOL:automatic] synonym: "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of between brain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of diencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of interbrain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of between brain" EXACT [OBOL:automatic] synonym: "brain biological structure of diencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of interbrain" EXACT [OBOL:automatic] synonym: "brain biological structure of mature diencephalon" EXACT [OBOL:automatic] synonym: "diencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "diencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "diencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "diencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "diencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "diencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "diencephalon segment" EXACT [FMA:62005] synonym: "diencephalon segment of brain" EXACT [OBOL:automatic] synonym: "interbrain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "interbrain biological structure of brain" EXACT [OBOL:automatic] synonym: "interbrain brain anatomical structure" EXACT [OBOL:automatic] synonym: "interbrain brain biological structure" EXACT [OBOL:automatic] synonym: "interbrain neuraxis segment" EXACT [OBOL:automatic] synonym: "interbrain regional part of brain" EXACT [OBOL:automatic] synonym: "interbrain segment of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "mature diencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "mature diencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "mature diencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of between brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of diencephalon" EXACT [OBOL:automatic] synonym: "neuraxis segment of interbrain" EXACT [OBOL:automatic] synonym: "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of between brain" EXACT [OBOL:automatic] synonym: "regional part of brain of diencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of interbrain" EXACT [OBOL:automatic] synonym: "regional part of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of between brain" EXACT [OBOL:automatic] synonym: "segment of brain of diencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of interbrain" EXACT [OBOL:automatic] synonym: "segment of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685] xref: FMA:62005 xref: NIF_GrossAnatomy:birnlex_1685 is_a: UBERON:0002780 ! regional part of forebrain [Term] id: UBERON:0002785 name: regional part of lateral hypothalamic region namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1687-FMA_62312 synonym: "lateral hypothalamic region segment" EXACT [FMA:62312] synonym: "segment of lateral hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1687] xref: FMA:62312 xref: NIF_GrossAnatomy:birnlex_1687 is_a: UBERON:0003048 ! regional part of hypothalamus [Term] id: UBERON:0002786 name: abducens nerve fibers namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1689-FMA_72491 synonym: "abducens nerve fibers" EXACT [FMA:72491] synonym: "abducens nerve tract" EXACT [FMA:72491] synonym: "central part of abducens nerve" EXACT [FMA:72491] synonym: "root of abducens nerve" EXACT [FMA:72491] xref: FMA:72491 xref: NIF_GrossAnatomy:birnlex_1689 is_a: UBERON:0006843 ! root of cranial nerve [Term] id: UBERON:0002787 name: decussation of trochlear nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1690-FMA_72488 synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488] synonym: "trochlear neural decussation" EXACT [FMA:72488] xref: FMA:72488 xref: NIF_GrossAnatomy:birnlex_1690 is_a: UBERON:0007418 ! decussation of neuraxis [Term] id: UBERON:0002788 name: anterior nuclear group namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1692-FMA_62019 def: "The anterior nuclei of thalamus (or anterior nuclear group) are collection of nuclei at the rostral end of the dorsal thalamus. [WP,unvetted]." [Wikipedia:Anterior_nuclear_group] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior nuclear group" EXACT [FMA:62019] synonym: "anterior nuclear group of thalamus" EXACT [FMA:62019] synonym: "anterior nuclei of thalamus" EXACT [FMA:62019] synonym: "anterior nucleus of thalamus" EXACT [FMA:62019] synonym: "anterior thalamic group" EXACT [MA:0000861] synonym: "anterior thalamic nuclei" EXACT [FMA:62019] synonym: "anterior thalamus" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei anterior thalami" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei anteriores (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei anteriores thalami" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei thalamicus anterior" EXACT [NIF_GrossAnatomy:birnlex_1692] xref: ABA:ATN xref: EV:0100196 xref: FMA:62019 xref: GAID:658 xref: MA:0000861 xref: MESH:A.08.186.211.730.385.826.701.080 xref: NIF_GrossAnatomy:birnlex_1692 xref: SCTID:279124009 xref: ZFA:0000427 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: UBERON:0002789 name: regional part of posterior hypothalamic region namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1697-FMA_62311 def: "A regional part of brain that is part of a posterior hypothalamic region [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of mammillary region" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of mammillary region" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of mammillary region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of mammillary region" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus brain biological structure" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus regional part of brain" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus segment of brain" EXACT [OBOL:automatic] synonym: "mammillary region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "mammillary region biological structure of brain" EXACT [OBOL:automatic] synonym: "mammillary region brain anatomical structure" EXACT [OBOL:automatic] synonym: "mammillary region brain biological structure" EXACT [OBOL:automatic] synonym: "mammillary region neuraxis segment" EXACT [OBOL:automatic] synonym: "mammillary region regional part of brain" EXACT [OBOL:automatic] synonym: "mammillary region segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "neuraxis segment of mammillary region" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region brain biological structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region regional part of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region segment" EXACT [FMA:62311] synonym: "posterior hypothalamic region segment of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamus brain biological structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior hypothalamus regional part of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of mammillary region" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "segment of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "segment of brain of mammillary region" EXACT [OBOL:automatic] synonym: "segment of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "segment of posterior hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1697] xref: FMA:62311 xref: NIF_GrossAnatomy:birnlex_1697 is_a: UBERON:0003048 ! regional part of hypothalamus [Term] id: UBERON:0002790 name: dorsal acoustic stria namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1698-FMA_72496 synonym: "posterior acoustic stria" EXACT [FMA:72496] synonym: "stria cochlearis posterior" EXACT [FMA:72496, FMA:TA] xref: FMA:72496 xref: NIF_GrossAnatomy:birnlex_1698 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002791 name: regional part of telencephalon namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374 def: "A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of telencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of telencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of telencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of telencephalon" EXACT [OBOL:automatic] synonym: "neuraxis segment of telencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of telencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of telencephalon" EXACT [OBOL:automatic] synonym: "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700] synonym: "telencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "telencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "telencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "telencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "telencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "telencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "telencephalon segment" EXACT [FMA:62374] synonym: "telencephalon segment of brain" EXACT [OBOL:automatic] xref: FMA:62374 xref: NIF_GrossAnatomy:birnlex_1700 is_a: UBERON:0002780 ! regional part of forebrain [Term] id: UBERON:0002792 name: lumbar spinal cord namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1704-FMA_71168 def: "." [Wikipedia:Lumbar_spinal_cord] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lumbar segment of spinal cord" EXACT [FMA:71168] synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168] synonym: "lumbar spinal cord" EXACT [FMA:71168] synonym: "segmenta lumbalia medullae spinalis [1-5]" EXACT [FMA:71168, FMA:TA] xref: FMA:71168 xref: NIF_GrossAnatomy:birnlex_1704 xref: SCTID:180962006 xref: ncithesaurus:Lumbar_Spinal_Cord is_a: UBERON:0005844 ! spinal cord segment [Term] id: UBERON:0002793 name: dorsal longitudinal fasciculus of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1707-FMA_72492 def: "A dorsal longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of pons" EXACT [OBOL:automatic] synonym: "bundle of Schutz of pons of varolius" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of pons" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of pons of varolius" EXACT [OBOL:automatic] synonym: "pons bundle of Schutz" EXACT [OBOL:automatic] synonym: "pons dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "pons of varolius bundle of Schutz" EXACT [OBOL:automatic] synonym: "pons of varolius dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons of varolius fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "pons of varolius posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of pons" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] xref: FMA:72492 xref: NIF_GrossAnatomy:birnlex_1707 is_a: UBERON:0003045 ! dorsal longitudinal fasciculus [Term] id: UBERON:0002794 name: medial longitudinal fasciculus of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1708-FMA_72493 def: "A medial longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic] synonym: "medial longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] synonym: "pons medial longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons of varolius medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:72493 xref: NIF_GrossAnatomy:birnlex_1708 is_a: UBERON:0002309 ! medial longitudinal fasciculus [Term] id: UBERON:0002795 name: frontal pole namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1716-FMA_74885 def: "Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine)." [NIF_GrossAnatomy:birnlex_1716] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "polus frontalis" EXACT [NeuroNames:57] xref: FMA:74885 xref: NIF_GrossAnatomy:birnlex_1716 xref: SCTID:314144002 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG is_a: UBERON:0009899 ! pole of cerebral hemisphere [Term] id: UBERON:0002796 name: motor root of trigeminal nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1717-FMA_52612 comment: todo - check ZFA synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612] synonym: "motor root of nervus v" EXACT [] synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612] xref: FMA:52612 xref: NIF_GrossAnatomy:birnlex_1717 xref: SCTID:280189001 xref: ZFA:0000650 is_a: UBERON:0004673 ! trigeminal nerve root relationship: part_of UBERON:0001896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! medulla oblongata [Term] id: UBERON:0002797 name: dorsal trigeminal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1718-FMA_72500 def: "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Dorsal_trigeminal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500] synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal secondary ascending tract of v" EXACT [] synonym: "dorsal secondary tract of v" EXACT [] synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal trigeminal pathway" EXACT [FMA:72500] synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500] synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500] synonym: "reticulothalamic tract" EXACT [FMA:72500] synonym: "tractus trigeminothalamicus posterior" EXACT [FMA:72500, FMA:TA] synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500] xref: FMA:72500 xref: NIF_GrossAnatomy:birnlex_1718 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002798 name: spinothalamic tract of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1719-FMA_72504 def: "Part of spinothalamic tract that is in the pontine tegmentum" [NIF_GrossAnatomy:birnlex_1719] synonym: "pons of varolius spinothalamic tract" EXACT [OBOL:automatic] synonym: "pons of varolius spinothalamic tract of medulla" EXACT [OBOL:automatic] synonym: "pons spinothalamic tract" EXACT [OBOL:automatic] synonym: "pons spinothalamic tract of medulla" EXACT [OBOL:automatic] synonym: "spinothalamic tract of medulla of pons" EXACT [OBOL:automatic] synonym: "spinothalamic tract of medulla of pons of varolius" EXACT [OBOL:automatic] synonym: "spinothalamic tract of pons of varolius" EXACT [OBOL:automatic] xref: FMA:72504 xref: NIF_GrossAnatomy:birnlex_1719 xref: SCTID:369026006 is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0003023 ! pontine tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002799 name: fronto-orbital sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1724-FMA_83768 synonym: "fronto-orbital dimple" EXACT [FMA:83768] synonym: "orbito-frontal sulcus" EXACT [FMA:83768] synonym: "orbitofrontal sulcus" EXACT [BM:Tel-Cx-OFS] xref: BM:Tel-Cx-OFS xref: FMA:83768 xref: NIF_GrossAnatomy:birnlex_1724 is_a: UBERON:0008334 ! subarachnoid sulcus relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0002800 name: spinal trigeminal tract of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1725-FMA_72507 xref: FMA:72507 xref: NIF_GrossAnatomy:birnlex_1725 xref: SCTID:369027002 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002801 name: stratum zonale of thalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1727-FMA_83905 synonym: "neuraxis stratum" EXACT [FMA:83905] synonym: "stratum zonale thalami" EXACT [NIF_GrossAnatomy:birnlex_1727] xref: FMA:83905 xref: NIF_GrossAnatomy:birnlex_1727 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002802 name: left parietal lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1728-FMA_72974 xref: FMA:72974 xref: NIF_GrossAnatomy:birnlex_1728 xref: SCTID:314147009 is_a: UBERON:0001872 ! parietal lobe property_value: "spatially_disjoint_from" UBERON:0002803 [Term] id: UBERON:0002803 name: right parietal lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1729-FMA_72973 xref: FMA:72973 xref: NIF_GrossAnatomy:birnlex_1729 xref: SCTID:314146000 is_a: UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002804 name: left limbic lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1780-FMA_72981 xref: FMA:72981 xref: NIF_GrossAnatomy:birnlex_1780 is_a: UBERON:0002600 ! limbic lobe [Term] id: UBERON:0002805 name: right limbic lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1781-FMA_72980 xref: FMA:72980 xref: NIF_GrossAnatomy:birnlex_1781 is_a: UBERON:0002600 ! limbic lobe [Term] id: UBERON:0002806 name: left occipital lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1782-FMA_72976 xref: FMA:72976 xref: NIF_GrossAnatomy:birnlex_1782 xref: SCTID:314150007 is_a: UBERON:0002021 ! occipital lobe property_value: "spatially_disjoint_from" UBERON:0002807 [Term] id: UBERON:0002807 name: right occipital lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1783-FMA_72975 xref: FMA:72975 xref: NIF_GrossAnatomy:birnlex_1783 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rv9OFy5wpEbGdrcN5Y29ycA xref: SCTID:314149007 is_a: UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002808 name: left temporal lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1784-FMA_72972 xref: FMA:72972 xref: NIF_GrossAnatomy:birnlex_1784 xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA xref: SCTID:314158000 is_a: UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002809 name: right temporal lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1785-FMA_72971 xref: FMA:72971 xref: NIF_GrossAnatomy:birnlex_1785 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA xref: SCTID:314157005 is_a: UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002810 name: right frontal lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1786-FMA_72969 xref: FMA:72969 xref: NIF_GrossAnatomy:birnlex_1786 xref: SCTID:314141005 is_a: UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002811 name: left frontal lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1787-FMA_72970 xref: FMA:72970 xref: NIF_GrossAnatomy:birnlex_1787 xref: SCTID:314142003 is_a: UBERON:0001870 ! frontal cortex property_value: "spatially_disjoint_from" UBERON:0002810 [Term] id: UBERON:0002812 name: left cerebral hemisphere namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1795-FMA_61819 synonym: "left hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1795] xref: FMA:61819 xref: NIF_GrossAnatomy:birnlex_1795 xref: SCTID:362323007 xref: ncithesaurus:Left_Cerebral_Hemisphere is_a: UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0002813 name: right cerebral hemisphere namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1797-FMA_67292 synonym: "right hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1797] xref: FMA:67292 xref: NIF_GrossAnatomy:birnlex_1797 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvigx5ZwpEbGdrcN5Y29ycA xref: SCTID:362322002 xref: ncithesaurus:Right_Cerebral_Hemisphere is_a: UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0002814 name: posterior superior fissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081254-FMA_83733 synonym: "fissura post clivalis" EXACT [FMA:83733, FMA:TA] synonym: "post-clival fissure" EXACT [FMA:83733] synonym: "postclival fissure" EXACT [FMA:83733] synonym: "posterior superior fissure of cerebellum" EXACT [FMA:83733] synonym: "postlunate fissure" EXACT [FMA:83733] xref: FMA:83733 xref: NIF_GrossAnatomy:birnlex_20081254 xref: NIF_GrossAnatomy:nlx_anat_20081254 xref: SCTID:314170001 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002815 name: horizontal fissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081255-FMA_14697 def: "The largest and deepest fissure in the cerebellum is named the horizontal sulcus (or horizontal fissure). It commences in front of the pons, and passes horizontally around the free margin of the hemisphere to the middle line behind, and divides the cerebellum into an upper and a lower portion. [WP,unvetted]." [Wikipedia:Horizontal_fissure_of_cerebellum] synonym: "fissura intercruralis cerebelli" EXACT [FMA:75135, FMA:TA] synonym: "great horizontal fissure" EXACT [FMA:75135] synonym: "horizontal fissure of cerebellum" EXACT [] synonym: "horizontal fissure of right lung(line)" EXACT [FMA:14697] synonym: "horizontal sulcus" EXACT [] synonym: "intercrural fissure of cerebellum" EXACT [FMA:75135] xref: FMA:14697 xref: FMA:75135 xref: NIF_GrossAnatomy:birnlex_20081255 xref: NIF_GrossAnatomy:nlx_anat_20081255 xref: SCTID:314173004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray702.png/200px-Gray702.png is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002816 name: prepyramidal fissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081257-FMA_75138 synonym: "fissura prebiventralis cerebelli" EXACT [FMA:75138, FMA:TA] synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138] synonym: "prepyramidal fissure of cerebellum" EXACT [FMA:75138] synonym: "prepyramidal sulcus" EXACT [FMA:75138] xref: FMA:75138 xref: NIF_GrossAnatomy:birnlex_20081257 xref: NIF_GrossAnatomy:nlx_anat_20081257 xref: SCTID:314171002 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002817 name: secondary fissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081258-FMA_84043 synonym: "fissura postpyramidalis cerebelli" EXACT [FMA:84043, FMA:TA] synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043] synonym: "postpyramidal fissure" EXACT [FMA:84043] synonym: "secondary fissure" EXACT [FMA:84043] synonym: "secondary fissure of cerebellum" EXACT [FMA:84043] xref: FMA:84043 xref: NIF_GrossAnatomy:birnlex_20081258 xref: NIF_GrossAnatomy:nlx_anat_20081258 xref: SCTID:314169002 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002818 name: posterolateral fissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081259-FMA_83730 synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "posterolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "prenodular fissure" EXACT [FMA:83730] synonym: "prenodular sulcus" EXACT [FMA:83730] synonym: "uvulonodular fissure" EXACT [FMA:83730] xref: FMA:83730 xref: NIF_GrossAnatomy:birnlex_20081259 xref: NIF_GrossAnatomy:nlx_anat_20081259 xref: SCTID:314172009 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002819 name: apex of cochlea namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2523-FMA_75641 def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [Wikipedia:Apex_of_cochlea] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cochlea apex" EXACT [FMA:75641] synonym: "cupula of cochlea" EXACT [FMA:75641] xref: FMA:75641 xref: NIF_GrossAnatomy:birnlex_2523 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002820 name: zona arcuata of basilar membrane of cochlea namespace: uberon alt_id: UBERON:0002821 alt_id: UBERON:NIF_GrossAnatomy_birnlex_2528-FMA_75709 xref: FMA:75709 xref: NIF_GrossAnatomy:birnlex_2528 is_a: UBERON:0005764 ! acellular membrane [Term] id: UBERON:0002822 name: macula lutea proper namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2542-FMA_58671 xref: FMA:58671 xref: NIF_GrossAnatomy:birnlex_2542 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea [Term] id: UBERON:0002823 name: clivus of fovea centralis namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2544-FMA_58674 comment: NIF differs from FMA synonym: "clivus of macula lutea" EXACT [NIF_GrossAnatomy:birnlex_2544] synonym: "fovea centralis clivus" EXACT [FMA:58674] xref: FMA:58674 xref: NIF_GrossAnatomy:birnlex_2544 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001786 ! fovea centralis [Term] id: UBERON:0002824 name: vestibular ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2549-FMA_53435 def: "The vestibular nerve ganglion (also called Scarpa's ganglion) is the ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]." [Wikipedia:Vestibular_ganglion] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Scarpa's ganglion" EXACT [FMA:53435] synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086] synonym: "vestibulocochlear component" EXACT [] xref: EMAPA:17573 xref: FMA:53435 xref: MA:0001086 xref: NIF_GrossAnatomy:birnlex_2549 xref: RETIRED_EHDAA2:0002199 xref: SCTID:244450009 xref: VHOG:0000682 xref: ncithesaurus:Vestibular_Ganglion is_a: UBERON:0001714 ! cranial ganglion relationship: part_of UBERON:0002827 ! auditory ganglion [Term] id: UBERON:0002825 name: superior part of vestibular ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2551-FMA_77531 synonym: "pars superior vestibularis" RELATED [MA:0002778] synonym: "vestibular ganglion superior part" EXACT [MA:0002778] xref: FMA:77531 xref: MA:0002778 xref: NIF_GrossAnatomy:birnlex_2551 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002826 name: inferior part of vestibular ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2552-FMA_77532 synonym: "vestibular ganglion inferior part" EXACT [MA:0002779] xref: FMA:77532 xref: MA:0002779 xref: NIF_GrossAnatomy:birnlex_2552 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002827 name: auditory ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2564-ZFA_0000588 comment: Editor notes: Consider follow MA naming scheme. // The cell bodies of the cochlear nerve lie within the central aspect of the cochlea and are collectively known as the spiral ganglion. This name reflects the fact that the cell bodies, considered as a unit, have a spiral (or perhaps more accurately, a helical) shape, reflecting the shape of the cochlea. The terms \"cochlear nerve fiber\" and \"spiral ganglion cell\" are used, to some degree, interchangeably, although the former may be used to more specifically refer to the central axons of the cochlear nerve. These central axons exit the cochlea at its base, where it forms a nerve trunk. In humans, this aspect of the nerve is roughly one inch in length. It projects centrally to the brainstem, where its fibers synapse with the cell bodies of the cochlear nucleus[Wikipedia:Cochlear_nerve] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "auditory ganglion" EXACT [ZFA:0000588] synonym: "gVIII" EXACT [ZFA:0000588] synonym: "sag" EXACT [ZFA:0000588] synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588] synonym: "statoacoustic ganglia" EXACT [ZFA:0000588] synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084] xref: EFO:0003543 xref: EHDAA2:0002196 xref: EHDAA:5569 xref: EHDAA:6653 xref: EMAPA:17571 xref: MA:0001084 xref: NIF_GrossAnatomy:birnlex_2564 xref: VHOG:0000696 xref: XAO:0004142 xref: ZFA:0000588 is_a: UBERON:0001714 ! cranial ganglion relationship: part_of UBERON:0002105 ! vestibulo-auditory system relationship: part_of UBERON:0001648 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! vestibulocochlear nerve [Term] id: UBERON:0002828 name: ventral cochlear nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2567-FMA_54621 def: "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]." [Wikipedia:Ventral_cochlear_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "anterior cochlear nucleus" EXACT [FMA:54621] synonym: "c1281209" EXACT [NIF_GrossAnatomy:birnlex_2567] synonym: "ventral cochlear nucleus" EXACT [FMA:54621] xref: ABA:VCO xref: BM:CV xref: FMA:54621 xref: NIF_GrossAnatomy:birnlex_2567 xref: SCTID:280178008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002829 name: dorsal cochlear nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2569-FMA_54624 def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [Wikipedia:Dorsal_cochlear_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal cochlear nucleus" EXACT [FMA:54624] synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624] synonym: "posterior cochlear nucleus" EXACT [FMA:54624] xref: ABA:DCO xref: BM:Me-CD xref: FMA:54624 xref: NIF_GrossAnatomy:birnlex_2569 xref: SCTID:280179000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png xref: ncithesaurus:Dorsal_Cochlear_Nucleus is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002830 name: anteroventral cochlear nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2572-FMA_72571 synonym: "anterior part of anterior cochlear nucleus" EXACT [NIF_GrossAnatomy:birnlex_2572] synonym: "anteroventral auditory nucleus" EXACT [FMA:72571] synonym: "nucleus magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_2572] xref: FMA:72571 xref: NIF_GrossAnatomy:birnlex_2572 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002831 name: posteroventral cochlear nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2573-FMA_72572 synonym: "posterior part of anterior cochlear nucleus" EXACT [NIF_GrossAnatomy:birnlex_2573] xref: FMA:72572 xref: NIF_GrossAnatomy:birnlex_2573 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002832 name: ventral nucleus of trapezoid body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2576-FMA_72477 synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] synonym: "nucleus anterior corporis trapezoidei" EXACT [FMA:72477, FMA:TA] xref: FMA:72477 xref: NIF_GrossAnatomy:birnlex_2576 xref: SCTID:369020000 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007247 ! superior olivary nucleus is_a: UBERON:0007633 ! nucleus of trapezoid body relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002833 name: medial nucleus of trapezoid body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2595-FMA_75732 xref: FMA:75732 xref: NIF_GrossAnatomy:birnlex_2595 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007633 ! nucleus of trapezoid body [Term] id: UBERON:0002834 name: cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2599-FMA_6005 synonym: "cervical dorsal root ganglion" EXACT [FMA:6005] synonym: "cervical spinal ganglion" EXACT [FMA:6005] xref: FMA:6005 xref: NIF_GrossAnatomy:birnlex_2599 xref: SCTID:278325008 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002835 name: thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2600-FMA_6006 def: "A dorsal root ganglion that is part of a thorax [Obol]." [OBOL:automatic] synonym: "dorsal root ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion of dorsal root of thorax" EXACT [OBOL:automatic] synonym: "ganglion spinalis of thorax" EXACT [OBOL:automatic] synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006] synonym: "thoracic spinal ganglion" EXACT [FMA:6006] synonym: "thorax dorsal root ganglion" EXACT [OBOL:automatic] synonym: "thorax ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "thorax ganglion spinalis" EXACT [OBOL:automatic] xref: FMA:6006 xref: NIF_GrossAnatomy:birnlex_2600 xref: SCTID:278326009 is_a: UBERON:0000044 ! dorsal root ganglion is_a: UBERON:0000961 ! thoracic ganglion [Term] id: UBERON:0002836 name: lumbar dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2601-FMA_6007 def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404] synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007] synonym: "lumbar spinal ganglion" EXACT [FMA:6007] xref: FMA:6007 xref: NIF_GrossAnatomy:birnlex_2601 xref: SCTID:278327000 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002837 name: sacral dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2602-FMA_6008 synonym: "sacral dorsal root ganglion" EXACT [FMA:6008] synonym: "sacral spinal ganglion" EXACT [FMA:6008] xref: FMA:6008 xref: NIF_GrossAnatomy:birnlex_2602 xref: SCTID:278328005 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002838 name: first cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2603-FMA_6010 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010] synonym: "first cervical spinal ganglion" EXACT [FMA:6010] xref: EMAPA:25144 xref: FMA:6010 xref: NIF_GrossAnatomy:birnlex_2603 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002839 name: second cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2604-FMA_6315 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315] synonym: "second cervical spinal ganglion" EXACT [FMA:6315] xref: EMAPA:25155 xref: FMA:6315 xref: NIF_GrossAnatomy:birnlex_2604 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002840 name: third cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2605-FMA_6316 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316] synonym: "third cervical spinal ganglion" EXACT [FMA:6316] xref: EMAPA:25156 xref: FMA:6316 xref: NIF_GrossAnatomy:birnlex_2605 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002841 name: fourth cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2606-FMA_6317 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317] synonym: "fourth cervical spinal ganglion" EXACT [FMA:6317] xref: EMAPA:25157 xref: FMA:6317 xref: NIF_GrossAnatomy:birnlex_2606 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002842 name: fifth cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2607-FMA_6318 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318] synonym: "fifth cervical spinal ganglion" EXACT [FMA:6318] xref: EMAPA:25158 xref: FMA:6318 xref: NIF_GrossAnatomy:birnlex_2607 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002843 name: seventh cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2609-FMA_6360 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360] synonym: "seventh cervical spinal ganglion" EXACT [FMA:6360] xref: EMAPA:25160 xref: FMA:6360 xref: NIF_GrossAnatomy:birnlex_2609 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002844 name: eighth cervical dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2610-FMA_6361 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361] synonym: "eighth cervical spinal ganglion" EXACT [FMA:6361] xref: FMA:6361 xref: NIF_GrossAnatomy:birnlex_2610 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002845 name: first thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2611-FMA_6321 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321] synonym: "first thoracic spinal ganglion" EXACT [FMA:6321] xref: EMAPA:25174 xref: FMA:6321 xref: NIF_GrossAnatomy:birnlex_2611 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002846 name: second thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2612-FMA_6322 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322] synonym: "second thoracic spinal ganglion" EXACT [FMA:6322] xref: EMAPA:25175 xref: FMA:6322 xref: NIF_GrossAnatomy:birnlex_2612 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002847 name: third thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2613-FMA_6323 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323] synonym: "third thoracic spinal ganglion" EXACT [FMA:6323] xref: EMAPA:25176 xref: FMA:6323 xref: NIF_GrossAnatomy:birnlex_2613 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002848 name: fifth thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2615-FMA_6325 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325] synonym: "fifth thoracic spinal ganglion" EXACT [FMA:6325] xref: EMAPA:25179 xref: FMA:6325 xref: NIF_GrossAnatomy:birnlex_2615 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002849 name: sixth thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2616-FMA_6326 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326] synonym: "sixth thoracic spinal ganglion" EXACT [FMA:6326] xref: EMAPA:25178 xref: FMA:6326 xref: NIF_GrossAnatomy:birnlex_2616 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002850 name: seventh thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2617-FMA_6327 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327] synonym: "seventh thoracic spinal ganglion" EXACT [FMA:6327] xref: EMAPA:25180 xref: FMA:6327 xref: NIF_GrossAnatomy:birnlex_2617 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002851 name: eighth thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2618-FMA_6328 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328] synonym: "eighth thoracic spinal ganglion" EXACT [FMA:6328] xref: EMAPA:25181 xref: FMA:6328 xref: NIF_GrossAnatomy:birnlex_2618 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002852 name: ninth thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2619-FMA_6329 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329] synonym: "ninth thoracic spinal ganglion" EXACT [FMA:6329] xref: EMAPA:25182 xref: FMA:6329 xref: NIF_GrossAnatomy:birnlex_2619 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002853 name: tenth thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2620-FMA_6330 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330] synonym: "tenth thoracic spinal ganglion" EXACT [FMA:6330] xref: EMAPA:25183 xref: FMA:6330 xref: NIF_GrossAnatomy:birnlex_2620 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002854 name: eleventh thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2621-FMA_6331 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331] synonym: "eleventh thoracic spinal ganglion" EXACT [FMA:6331] xref: EMAPA:25184 xref: FMA:6331 xref: NIF_GrossAnatomy:birnlex_2621 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002855 name: twelfth thoracic dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2622-FMA_6332 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332] synonym: "twelfth thoracic spinal ganglion" EXACT [FMA:6332] xref: EMAPA:25185 xref: FMA:6332 xref: NIF_GrossAnatomy:birnlex_2622 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002856 name: second lumbar dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2623-FMA_6336 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336] synonym: "second lumbar spinal ganglion" EXACT [FMA:6336] xref: EMAPA:25165 xref: FMA:6336 xref: NIF_GrossAnatomy:birnlex_2623 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002857 name: first lumbar dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2624-FMA_6335 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335] synonym: "first lumbar spinal ganglion" EXACT [FMA:6335] xref: EMAPA:25164 xref: FMA:6335 xref: NIF_GrossAnatomy:birnlex_2624 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002858 name: third lumbar dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2625-FMA_6337 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337] synonym: "third lumbar spinal ganglion" EXACT [FMA:6337] xref: EMAPA:25166 xref: FMA:6337 xref: NIF_GrossAnatomy:birnlex_2625 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002859 name: fifth lumbar dorsal root ganglion namespace: uberon alt_id: UBERON:0003944 alt_id: UBERON:NIF_GrossAnatomy_birnlex_2627-FMA_6339 def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra" [MP:0001022] subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "L5 dorsal root ganglion" EXACT [MP:0001022] synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339] synonym: "fifth lumbar spinal ganglion" EXACT [FMA:6339] xref: EMAPA:25168 xref: FMA:6339 xref: NIF_GrossAnatomy:birnlex_2627 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002860 name: first sacral dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2628-FMA_6342 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342] synonym: "first sacral spinal ganglion" EXACT [FMA:6342] xref: EMAPA:25170 xref: FMA:6342 xref: NIF_GrossAnatomy:birnlex_2628 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002861 name: second sacral dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2629-FMA_6343 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343] synonym: "second sacral spinal ganglion" EXACT [FMA:6343] xref: EMAPA:25171 xref: FMA:6343 xref: NIF_GrossAnatomy:birnlex_2629 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002862 name: third sacral dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2630-FMA_6344 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344] synonym: "third sacral spinal ganglion" EXACT [FMA:6344] xref: EMAPA:25172 xref: FMA:6344 xref: NIF_GrossAnatomy:birnlex_2630 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002863 name: fifth sacral dorsal root ganglion namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2632-FMA_6346 subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346] synonym: "fifth sacral spinal ganglion" EXACT [FMA:6346] xref: FMA:6346 xref: NIF_GrossAnatomy:birnlex_2632 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002864 name: accessory cuneate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2634-FMA_72603 def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar (cuneate nucleus > cerebellum) fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [Wikipedia:Accessory_cuneate_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "external cuneate nucleus" EXACT [FMA:72603] synonym: "lateral cuneate nucleus" EXACT [FMA:72603] synonym: "nucleus of corpus restiforme" EXACT [FMA:72603] xref: ABA:ECU xref: BM:Me-CX xref: EV:0100285 xref: FMA:72603 xref: NIF_GrossAnatomy:birnlex_2634 xref: SCTID:15575006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0002126 property_value: "spatially_disjoint_from" UBERON:0002162 property_value: "spatially_disjoint_from" UBERON:0002591 property_value: "spatially_disjoint_from" UBERON:0002610 property_value: "spatially_disjoint_from" UBERON:0002866 property_value: "spatially_disjoint_from" UBERON:0002873 property_value: "spatially_disjoint_from" UBERON:0007633 [Term] id: UBERON:0002865 name: arcuate nucleus of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2635-FMA_72609 def: "An arcuate nucleus of hypothalamus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic] synonym: "arcuate nucleus of hypothalamus of medulla" EXACT [OBOL:automatic] synonym: "arcuate nucleus-1" EXACT [FMA:72609] synonym: "arcuate nucleus-2 of medulla" EXACT [OBOL:automatic] synonym: "arcuate periventricular nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular hypothalamic nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular periventricular nucleus of medulla" EXACT [OBOL:automatic] synonym: "medial arcuate nucleus" EXACT [FMA:72609] synonym: "medulla arcuate hypothalamic nucleus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus of hypothalamus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus-2" EXACT [OBOL:automatic] synonym: "medulla arcuate periventricular nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular hypothalamic nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular periventricular nucleus" EXACT [OBOL:automatic] synonym: "nucleus arciformis pyramidalis" EXACT [NIF_GrossAnatomy:birnlex_2635] xref: FMA:72609 xref: NIF_GrossAnatomy:birnlex_2635 is_a: UBERON:0001932 ! arcuate nucleus of hypothalamus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002866 name: caudal part of spinal trigeminal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2637-FMA_72606 synonym: "caudal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2637] synonym: "caudal nucleus (kandell)" EXACT [] synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606] xref: ABA:SPVC xref: EV:0100235 xref: FMA:72606 xref: MESH:A.08.186.211.132.931.920.927 xref: NIF_GrossAnatomy:birnlex_2637 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve property_value: "spatially_disjoint_from" UBERON:0002126 property_value: "spatially_disjoint_from" UBERON:0002162 property_value: "spatially_disjoint_from" UBERON:0002591 property_value: "spatially_disjoint_from" UBERON:0002610 property_value: "spatially_disjoint_from" UBERON:0002864 property_value: "spatially_disjoint_from" UBERON:0002873 property_value: "spatially_disjoint_from" UBERON:0007633 [Term] id: UBERON:0002867 name: central gray substance of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2638-FMA_72595 synonym: "central gray matter" EXACT [NIF_GrossAnatomy:birnlex_2638] synonym: "medullary central gray substance" EXACT [FMA:72595] xref: FMA:72595 xref: NIF_GrossAnatomy:birnlex_2638 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002868 name: commissural nucleus of vagus nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2639-FMA_54597 synonym: "commissural nucleus-1" EXACT [FMA:54597] synonym: "nucleus of inferior commissure" EXACT [FMA:54597] synonym: "nucleus of inferior commisure" EXACT [NIF_GrossAnatomy:birnlex_2639] xref: FMA:54597 xref: NIF_GrossAnatomy:birnlex_2639 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002869 name: diffuse reticular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2641-FMA_72598 synonym: "kolloker-fuse nucleus" EXACT [NIF_GrossAnatomy:birnlex_2641] synonym: "nucleus of kolliker-fuse" EXACT [] xref: FMA:72598 xref: NIF_GrossAnatomy:birnlex_2641 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002870 name: dorsal motor nucleus of vagus nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2642-FMA_54592 def: "The dorsal nucleus of the vagus nerve (or posterior motor nucleus of vagus) is a cranial nerve nucleus for the vagus nerve that arises from the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the heart, gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. [WP,unvetted]." [Wikipedia:Dorsal_motor_nucleus_of_vagus_nerve] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592] synonym: "dorsal motor nucleus of the vagus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of vagus X nerve" EXACT [MA:0001036] synonym: "dorsal motor nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor vagal nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal vagal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2642, Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "nucleus alaris" EXACT [NIF_GrossAnatomy:birnlex_2642] synonym: "posterior nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "vagus nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] xref: ABA:DMX xref: BM:DX xref: EHDAA2:0004649 xref: EV:0100287 xref: FMA:54592 xref: MA:0001036 xref: NIF_GrossAnatomy:birnlex_2642 xref: SCTID:52884007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray697.png/200px-Gray697.png xref: ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002871 name: hypoglossal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2644-FMA_54505 def: "The hypoglossal nucleus is a cranial nerve nucleus, and it extends the length of the medulla, and being a motor nucleus, is close to the midline. In the open medulla, it is visible as what is known as the hypoglossal trigone, a raised area (medial to the vagal trigone) protruding slightly into the fourth ventricle. In the closed medulla, the gracile and cuneate nuclei lie posteriorly, which means the nucleus is not as close to the back of the medulla as in the open medulla. It is, however, still close to the midline. [WP,unvetted]." [Wikipedia:Hypoglossal_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hypoglossal XII nucleus" EXACT [MA:0001039] synonym: "hypoglossal nerve nucleus" EXACT [FMA:54505] synonym: "hypoglossal nucleus" EXACT [FMA:54505] synonym: "nucleus nervi hypoglossi" EXACT [FMA:54505, FMA:TA] synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505] synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505] xref: ABA:XII xref: BM:XII xref: EHDAA2:0004635 xref: EV:0100286 xref: FMA:54505 xref: MA:0001039 xref: NIF_GrossAnatomy:birnlex_2644 xref: SCTID:47361005 xref: VHOG:0001358 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png xref: ncithesaurus:Hypoglossal_Nucleus xref: ncithesaurus:Nucleus_of_the_Hypoglossal_Nerve is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002872 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002872 name: inferior salivatory nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2645-FMA_72601 def: "In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_salivatory_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior salivary nucleus" EXACT [GO:0021752] synonym: "inferior salivatary nucleus" EXACT [] xref: ABA:ISN xref: EHDAA2:0004641 xref: FMA:72601 xref: NIF_GrossAnatomy:birnlex_2645 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray843.png/200px-Gray843.png is_a: UBERON:0004133 ! salivatory nucleus property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002877 [Term] id: UBERON:0002873 name: interpolar part of spinal trigeminal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2646-FMA_235324 xref: ABA:SPVI xref: FMA:235324 xref: NIF_GrossAnatomy:birnlex_2646 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve property_value: "spatially_disjoint_from" UBERON:0002126 property_value: "spatially_disjoint_from" UBERON:0002162 property_value: "spatially_disjoint_from" UBERON:0002591 property_value: "spatially_disjoint_from" UBERON:0002610 property_value: "spatially_disjoint_from" UBERON:0002864 property_value: "spatially_disjoint_from" UBERON:0002866 property_value: "spatially_disjoint_from" UBERON:0007633 [Term] id: UBERON:0002874 name: lateral pericuneate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2647-FMA_72604 xref: FMA:72604 xref: NIF_GrossAnatomy:birnlex_2647 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002875 name: medial pericuneate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2648-FMA_72605 xref: FMA:72605 xref: NIF_GrossAnatomy:birnlex_2648 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002876 name: nucleus intercalatus namespace: uberon alt_id: UBERON:0002878 alt_id: UBERON:NIF_GrossAnatomy_birnlex_2651-FMA_72597 comment: two NIF classes with the same name synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597] synonym: "nucleus of staderini" EXACT [] synonym: "nucleus staderini" EXACT [NIF_GrossAnatomy:birnlex_2651, NIF_GrossAnatomy:birnlex_2654] xref: EV:0100291 xref: FMA:72597 xref: NIF_GrossAnatomy:birnlex_2651 xref: NIF_GrossAnatomy:birnlex_2654 xref: SCTID:369077004 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002877 name: parasolitary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2653-FMA_77091 synonym: "nucleus fasciculus solitarius" EXACT [NIF_GrossAnatomy:birnlex_2653] synonym: "nucleus juxtasolitarius" EXACT [NIF_GrossAnatomy:birnlex_2653] xref: ABA:PAS xref: FMA:77091 xref: NIF_GrossAnatomy:birnlex_2653 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0001719 property_value: "spatially_disjoint_from" UBERON:0002127 property_value: "spatially_disjoint_from" UBERON:0002154 property_value: "spatially_disjoint_from" UBERON:0002155 property_value: "spatially_disjoint_from" UBERON:0002559 property_value: "spatially_disjoint_from" UBERON:0002673 property_value: "spatially_disjoint_from" UBERON:0002870 property_value: "spatially_disjoint_from" UBERON:0002871 property_value: "spatially_disjoint_from" UBERON:0002872 [Term] id: UBERON:0002879 name: peritrigeminal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2655-FMA_72600 xref: FMA:72600 xref: NIF_GrossAnatomy:birnlex_2655 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002880 name: pontobulbar nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2656-FMA_72608 synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608] synonym: "pontobulbar body" EXACT [FMA:72608] xref: FMA:72608 xref: NIF_GrossAnatomy:birnlex_2656 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002881 name: sublingual nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2657-FMA_68574 def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [Wikipedia:Sublingual_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior central nucleus" RELATED INCONSISTENT [Wikipedia:Sublingual_nucleus] synonym: "nucleus of roller" EXACT [FMA:68574, Wikipedia:Sublingual_nucleus] xref: ABA:NR xref: FMA:68574 xref: NIF_GrossAnatomy:birnlex_2657 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0002160 [Term] id: UBERON:0002882 name: supraspinal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2658-FMA_74507 xref: BM:SSp xref: EV:0100282 xref: FMA:74507 xref: NIF_GrossAnatomy:birnlex_2658 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002883 name: central amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2682-FMA_74047 synonym: "amygdala central nucleus" RELATED [BTO:0002686] synonym: "central nucleus of amygda" EXACT [NIF_GrossAnatomy:birnlex_2682] synonym: "central nucleus of amygdala" EXACT [FMA:74047] synonym: "nucleus amygdalae centralis" RELATED [BTO:0002686] xref: BM:Tel-Am-ACE xref: BTO:0002686 xref: EV:0100191 xref: FMA:74047 xref: MA:0002923 xref: NIF_GrossAnatomy:birnlex_2682 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002884 name: intercalated amygdaloid nuclei namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2683-FMA_61868 synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868] synonym: "intercalated amygdaloid nucleus" EXACT [FMA:61868] synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868] synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868] synonym: "intercalated nucleus of the amygdala" EXACT [NIF_GrossAnatomy:birnlex_2683] synonym: "massa intercalata" EXACT [NIF_GrossAnatomy:birnlex_2683] synonym: "massa intercalata of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2683] xref: FMA:61868 xref: MA:0002925 xref: NIF_GrossAnatomy:birnlex_2683 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002885 name: accessory basal amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2686-FMA_61867 synonym: "accessory basal nucleus of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2686] synonym: "basal amygdaloid nucleus, medial part" EXACT [NIF_GrossAnatomy:birnlex_2686] synonym: "basomedial nucleus (de olmos)" EXACT [NIF_GrossAnatomy:birnlex_2686] xref: FMA:61867 xref: NIF_GrossAnatomy:birnlex_2686 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002886 name: lateral amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2687-FMA_61866 synonym: "lateral nucleus of amygdala" EXACT [FMA:61866] synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866] synonym: "nucleus amygdalae lateralis" RELATED [BTO:0002704] xref: ABA:LA xref: BM:Tel-Am-ALA xref: BTO:0002704 xref: FMA:61866 xref: MA:0002926 xref: NIF_GrossAnatomy:birnlex_2687 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002887 name: basal amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2692-FMA_68855 synonym: "basolateral amygaloid nucleus" EXACT [NIF_GrossAnatomy:birnlex_2692] synonym: "basolateral amygdalar nucleus" EXACT [NIF_GrossAnatomy:birnlex_2692] synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855] synonym: "basolateral nucleus (de olmos)" EXACT [] synonym: "intermediate principal nucleus" EXACT [FMA:68855] synonym: "nucleus amygdalae basalis lateralis" EXACT [FMA:68855, FMA:TA] xref: ABA:BLA xref: FMA:68855 xref: MA:0002921 xref: NIF_GrossAnatomy:birnlex_2692 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala property_value: "spatially_disjoint_from" UBERON:0002023 [Term] id: UBERON:0002888 name: lateral part of basal amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2695-FMA_68857 synonym: "lateral basal nucleus of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2695] synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857] synonym: "lateral division of basal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2695] synonym: "lateral division of the basal nucleus" EXACT [FMA:68857] xref: FMA:68857 xref: NIF_GrossAnatomy:birnlex_2695 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus [Term] id: UBERON:0002889 name: medial part of basal amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2696-FMA_68858 synonym: "basomedial amygdalar nucleus" EXACT [ABA:BMA] synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858, MA:0002922] synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858] synonym: "medial division of basal nucleus" EXACT [FMA:68858] synonym: "nucleus amygdalae basalis medialis" EXACT [FMA:68858, FMA:TA] xref: ABA:BMA xref: FMA:68858 xref: MA:0002922 xref: NIF_GrossAnatomy:birnlex_2696 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus [Term] id: UBERON:0002890 name: anterior amygdaloid area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2698-FMA_61861 synonym: "anterior amygaloid area" EXACT [NIF_GrossAnatomy:birnlex_2698] synonym: "anterior amygdalar area" EXACT [NIF_GrossAnatomy:birnlex_2698] xref: ABA:AAA xref: BM:Tel-Am-AAA xref: FMA:61861 xref: MA:0002919 xref: NIF_GrossAnatomy:birnlex_2698 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002891 name: cortical amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2700-FMA_61862 synonym: "nucleus amygdalae corticalis" RELATED [BTO:0002703] synonym: "posterior cortical amygdaloid nucleus" EXACT [NIF_GrossAnatomy:birnlex_2700] synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862] xref: BTO:0002703 xref: EV:0100193 xref: FMA:61862 xref: MA:0002924 xref: NIF_GrossAnatomy:birnlex_2700 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002892 name: medial amygdaloid nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2701-FMA_74046 synonym: "medial amygalar nucleus" EXACT [NIF_GrossAnatomy:birnlex_2701] synonym: "medial nucleus of amygdala" EXACT [FMA:74046] synonym: "nucleus amygdalae medialis" RELATED [BTO:0002702] xref: BM:Tel-Am-AME xref: BTO:0002702 xref: EV:0100192 xref: FMA:74046 xref: MA:0002927 xref: NIF_GrossAnatomy:birnlex_2701 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002893 name: nucleus of lateral olfactory tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2702-FMA_61865 synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865] synonym: "nucleus of the lateral olfactory tract (ganser)" EXACT [NIF_GrossAnatomy:birnlex_2702] xref: ABA:NLOT xref: BM:Tel-NLOT xref: FMA:61865 xref: NIF_GrossAnatomy:birnlex_2702 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala property_value: "spatially_disjoint_from" UBERON:0002266 property_value: "spatially_disjoint_from" UBERON:0002590 property_value: "spatially_disjoint_from" UBERON:0004069 [Term] id: UBERON:0002894 name: olfactory cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2707-MA_0000193 def: "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]." [Wikipedia:Olfactory_cortex] comment: _:comment___:_:@___:_:source__GO___:.__Editor note - consider relationship: receives_input_from UBERON:0002264 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "archaeocortex" RELATED [BTO:0001446] synonym: "archeocortex" RELATED [BTO:0001446] synonym: "olfactory lobe" RELATED [MA:0000193] xref: BTO:0001446 xref: EHDAA2:0001289 xref: EHDAA:5482 xref: EMAPA:17779 xref: MA:0000193 xref: NIF_GrossAnatomy:birnlex_2707 xref: VHOG:0000325 xref: ncithesaurus:Olfactory_Lobe is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0005366 ! olfactory lobe [Term] id: UBERON:0002895 name: secondary olfactory cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_2709-FMA_72356 def: "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed)." [NIF_GrossAnatomy:birnlex_2709] comment: FMA considers this a syn of entorhinal cortex. See also brodman definition subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Brodmann area 28" EXACT [] synonym: "area 28 of Brodmann" EXACT [] synonym: "area 28 of Brodmann (crosby)" EXACT [] synonym: "entorhinal cortex" RELATED [FMA:72356] synonym: "secondary olfactory areas" EXACT [NIF_GrossAnatomy:birnlex_2709] synonym: "secondary olfactory cortex" EXACT [FMA:72356] synonym: "secondary olfactory cortical area (carpenter)" EXACT [] xref: BTO:0002650 xref: BTO:0004345 xref: EV:0100179 xref: FMA:68625 xref: NIF_GrossAnatomy:birnlex_2709 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002896 name: telodiencephalic fissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4001-FMA_83726 synonym: "telo-diencephalic fissure" EXACT [FMA:83726] xref: FMA:83726 xref: NIF_GrossAnatomy:birnlex_4001 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002897 name: cistern of lamina terminalis namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4002-FMA_74516 synonym: "cisterna lamina terminalis" EXACT [NIF_GrossAnatomy:birnlex_4002] synonym: "lamina terminalis cistern" EXACT [FMA:74516] xref: FMA:74516 xref: NIF_GrossAnatomy:birnlex_4002 xref: SCTID:12692002 xref: ncithesaurus:Lamina_Terminalis_Cistern is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0002898 name: chiasmatic cistern namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4003-FMA_74515 def: "In front, the cisterna interpeduncularis extends forward across the optic chiasma, forming the cistern of chiasma or chiasmatic cistern, and on to the upper surface of the corpus callosum, for the arachnoid stretches across from one cerebral hemisphere to the other immediately beneath the free border of the falx cerebri, and thus leaves a space in which the anterior cerebral arteries are contained. The 'leaf' or extension of the chiasmatic cistern above the chiasma, which is separated from the optic recess of the third ventricle by the thin lamina terminalis, has been called the suprachiasmatic cistern. As spaces filled with freely circulating cerebrospinal fluid, cisterns receive little direct study, but are mentioned in pathological conditions. Cysts and tumors of the lamina terminalis extend into the suprachiasmatic cistern, as can pituitary tumors, or the cistern can be partially or completely effaced by injury and hematoma or by blockage of the cerebral aqueduct. [WP,unvetted]." [Wikipedia:Chiasmatic_cistern] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cisterna chiasmatica" EXACT [NIF_GrossAnatomy:birnlex_4003] synonym: "cisterna chiasmatis" EXACT [NIF_GrossAnatomy:birnlex_4003] xref: EMAPA:19057 xref: EMAPA:19150 xref: EMAPA:25081 xref: FMA:74515 xref: NIF_GrossAnatomy:birnlex_4003 xref: SCTID:47947006 xref: ncithesaurus:Chiasmatic_Cistern is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0002899 name: hippocampal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4004-FMA_83747 def: "The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]." [Wikipedia:Hippocampal_sulcus] comment: AO notes - two classes in ncit (in general ncit distinguishes between fissure and sulcus, whereas FMA treats these as exact synonyms) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dentate fissure" EXACT [FMA:83747] synonym: "hippocampal fissure" EXACT [FMA:83747] synonym: "sulcus hippocampi" EXACT [NIF_GrossAnatomy:birnlex_4004] xref: FMA:83747 xref: NIF_GrossAnatomy:birnlex_4004 xref: SCTID:369101000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg xref: ncithesaurus:Hippocampal_Fissure is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002900 name: transverse occipital sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4013-FMA_83786 synonym: "sulcus occipitalis transversus" EXACT [NIF_GrossAnatomy:birnlex_4013] xref: BTO:0003786 xref: FMA:83786 xref: NIF_GrossAnatomy:birnlex_4013 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002901 name: posterior calcarine sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4015-FMA_83787 synonym: "postcalcarine sulcus" EXACT [FMA:83787] synonym: "posterior calcarine fissure" EXACT [FMA:83787] synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787] synonym: "sulcus calcarinus posterior" EXACT [NIF_GrossAnatomy:birnlex_4015] xref: FMA:83787 xref: NIF_GrossAnatomy:birnlex_4015 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002902 name: occipital pole namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4016-FMA_74892 def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Occipital_pole] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "polus occipitalis" EXACT [NIF_GrossAnatomy:birnlex_4016] synonym: "polus occipitalis cerebri" RELATED [BTO:0001868] xref: BTO:0001868 xref: FMA:74892 xref: NIF_GrossAnatomy:birnlex_4016 xref: SCTID:314160003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG is_a: UBERON:0009899 ! pole of cerebral hemisphere relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002903 name: lunate sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4017-FMA_83788 synonym: "lunate fissure" EXACT [FMA:83788] synonym: "sulcus lunatus" EXACT [NIF_GrossAnatomy:birnlex_4017] synonym: "sulcus simialis" EXACT [NIF_GrossAnatomy:birnlex_4017] xref: BM:Tel-Cx-LUS xref: FMA:83788 xref: NIF_GrossAnatomy:birnlex_4017 xref: ncithesaurus:Lunate_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002904 name: lateral occipital sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4018-FMA_83785 def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [Wikipedia:Lateral_occipital_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sulcus occipitalis lateralis" EXACT [NIF_GrossAnatomy:birnlex_4018] xref: FMA:83785 xref: NIF_GrossAnatomy:birnlex_4018 xref: SCTID:369219003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Gray727_lateral-occipital_sulcus.svg/200px-Gray727_lateral-occipital_sulcus.svg.png xref: ncithesaurus:Lateral-occipital_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002905 name: intralingual sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4019-FMA_83789 synonym: "sulcus intralingualis" EXACT [NIF_GrossAnatomy:birnlex_4019] xref: FMA:83789 xref: NIF_GrossAnatomy:birnlex_4019 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002906 name: anterior occipital sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4023-FMA_75758 synonym: "ascending limb of the inferior temporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "posterior inferior temporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "sulci occipitales superiores" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "sulcus annectans" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "sulcus occipitalis anterior" EXACT [NIF_GrossAnatomy:birnlex_4023] xref: FMA:75758 xref: NIF_GrossAnatomy:birnlex_4023 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002907 name: superior postcentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4025-FMA_83775 synonym: "postcentral dimple" EXACT [FMA:83775] synonym: "sulcus postcentralis superior" EXACT [NIF_GrossAnatomy:birnlex_4025] xref: FMA:83775 xref: NIF_GrossAnatomy:birnlex_4025 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002908 name: subparietal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4026-FMA_83777 synonym: "splenial sulcus" EXACT [FMA:83777] synonym: "sulcus subparietalis" EXACT [NIF_GrossAnatomy:birnlex_4026] synonym: "suprasplenial sulcus" EXACT [FMA:83777] xref: BM:Tel-Cx-SPS xref: FMA:83777 xref: NIF_GrossAnatomy:birnlex_4026 xref: SCTID:279352008 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002909 name: posterior subcentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4027-FMA_83778 synonym: "sulcus subcentralis posterior" EXACT [NIF_GrossAnatomy:birnlex_4027] xref: FMA:83778 xref: NIF_GrossAnatomy:birnlex_4027 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002910 name: posterior ascending limb of lateral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4028-FMA_83761 synonym: "ascending terminal ramus of sylvian fissure" EXACT [] synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761] synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761] synonym: "ramus posterior ascendens fissurae lateralis" EXACT [NIF_GrossAnatomy:birnlex_4028] synonym: "ramus posterior sulci lateralis cerebri" EXACT [FMA:83761, FMA:TA] xref: FMA:83761 xref: NIF_GrossAnatomy:birnlex_4028 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002911 name: parietal operculum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4029-FMA_74889 def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [Wikipedia:Parietal_operculum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "operculum parietale" EXACT [NIF_GrossAnatomy:birnlex_4029] xref: FMA:74889 xref: NIF_GrossAnatomy:birnlex_4029 xref: SCTID:362353000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Operculum.png/200px-Operculum.png is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010262 ! operculum of brain [Term] id: UBERON:0002912 name: marginal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4030-FMA_83773 def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]." [Wikipedia:Marginal_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773] synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773] synonym: "ramus marginalis sulci cingulati" EXACT [NIF_GrossAnatomy:birnlex_4030] synonym: "ramus marginalis sulci cinguli" EXACT [FMA:83773, FMA:TA] xref: FMA:83773 xref: NIF_GrossAnatomy:birnlex_4030 xref: SCTID:279351001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray727_marginal_sulcus.svg/200px-Gray727_marginal_sulcus.svg.png is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002913 name: intraparietal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4031-FMA_83772 def: "The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]." [Wikipedia:Intraparietal_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Turner sulcus" RELATED [BTO:0003787] synonym: "interparietal fissure" EXACT [FMA:83772] synonym: "intraparietal fissure" EXACT [FMA:83772] synonym: "intraparietal sulcus of Turner" RELATED [BTO:0003787] synonym: "sulcus interparietalis" EXACT [NIF_GrossAnatomy:birnlex_4031] synonym: "sulcus intraparietalis" RELATED [BTO:0003787] xref: BM:Tel-Cx-IPS xref: BTO:0003787 xref: FMA:83772 xref: NIF_GrossAnatomy:birnlex_4031 xref: SCTID:279338006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray726_intraparietal_sulcus.svg/200px-Gray726_intraparietal_sulcus.svg.png xref: ncithesaurus:Intraparietal_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002914 name: inferior postcentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4032-FMA_83776 synonym: "sulcus postcentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_4032] xref: FMA:83776 xref: NIF_GrossAnatomy:birnlex_4032 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002915 name: postcentral sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4033-FMA_83774 def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [Wikipedia:Postcentral_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774] synonym: "postcentral fissure-1" EXACT [FMA:83774] synonym: "structure of postcentral sulcus" EXACT [NIF_GrossAnatomy:birnlex_4033] synonym: "sulcus postcentralis" EXACT [NIF_GrossAnatomy:birnlex_4033] xref: BM:Tel-Cx-PoCS xref: FMA:83774 xref: NIF_GrossAnatomy:birnlex_4033 xref: SCTID:279339003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Postcentral_sulcus.png/200px-Postcentral_sulcus.png xref: ncithesaurus:Postcentral_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002916 name: central sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4035-FMA_83752 def: "The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]." [Wikipedia:Central_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central cerebral sulcus" EXACT [FMA:83752] synonym: "central fissure" EXACT [FMA:83752] synonym: "central sulcus of rolando" EXACT [] synonym: "fissure of rolando" EXACT [] synonym: "rolandic fissure" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus centralis" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus centralis (rolandi)" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus centralis cerebri" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus of rolando" EXACT [] xref: BM:Tel-Cx-CS xref: FMA:83752 xref: NIF_GrossAnatomy:birnlex_4035 xref: OpenCyc:Mx4rvjMKxpwpEbGdrcN5Y29ycA xref: SCTID:279340001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Central_sulcus.png/200px-Central_sulcus.png xref: ncithesaurus:Central_Sulcus_of_Rolando is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002917 name: regional part of inferior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4036-FMA_77871 def: "A regional part of brain that is part of a inferior colliculus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "biological structure of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of caudal colliculus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior colliculus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior colliculus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "brain biological structure of caudal colliculus" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior colliculus" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior colliculus" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "caudal colliculus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "caudal colliculus biological structure of brain" EXACT [OBOL:automatic] synonym: "caudal colliculus brain anatomical structure" EXACT [OBOL:automatic] synonym: "caudal colliculus brain biological structure" EXACT [OBOL:automatic] synonym: "caudal colliculus neuraxis segment" EXACT [OBOL:automatic] synonym: "caudal colliculus regional part of brain" EXACT [OBOL:automatic] synonym: "caudal colliculus segment of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior colliculus brain biological structure" EXACT [OBOL:automatic] synonym: "inferior colliculus neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior colliculus regional part of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus segment" EXACT [FMA:77871] synonym: "inferior colliculus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of caudal colliculus" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior colliculus" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior colliculus" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "posterior colliculus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior colliculus biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior colliculus brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior colliculus brain biological structure" EXACT [OBOL:automatic] synonym: "posterior colliculus neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior colliculus regional part of brain" EXACT [OBOL:automatic] synonym: "posterior colliculus segment of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum brain biological structure" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum regional part of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "segment of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "segment of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "segment of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "segment of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "segment of inferior colliculus" EXACT [NIF_GrossAnatomy:birnlex_4036] xref: FMA:77871 xref: NIF_GrossAnatomy:birnlex_4036 is_a: UBERON:0002966 ! regional part of midbrain tectum [Term] id: UBERON:0002918 name: medial parabrachial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4038-FMA_72480 def: "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Medial_parabrachial_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:72480 xref: NIF_GrossAnatomy:birnlex_4038 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002919 name: anterior parolfactory sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4039-FMA_83744 synonym: "paraolfactory sulci" EXACT PLURAL [NIF_GrossAnatomy:birnlex_4039] synonym: "paraolfactory sulcus" EXACT [FMA:83744] synonym: "sulcus parolfactorius anterior" EXACT [NIF_GrossAnatomy:birnlex_4039] xref: FMA:83744 xref: NIF_GrossAnatomy:birnlex_4039 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002920 name: callosal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4040-FMA_83743 def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [Wikipedia:Callosal_sulcus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sulcus corporis callosi" EXACT [NIF_GrossAnatomy:birnlex_4040] synonym: "sulcus of corpus callosum" EXACT [FMA:83743] xref: FMA:83743 xref: NIF_GrossAnatomy:birnlex_4040 xref: SCTID:279349000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray727_sulcus_of_the_corpus_callosum.svg/200px-Gray727_sulcus_of_the_corpus_callosum.svg.png is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002921 name: longitudinal fissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4041-FMA_83727 def: "The great longitudinal fissure (or longitudinal cerebral fissure, or longitudinal fissure, or interhemispheric fissure) is the deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]." [Wikipedia:Longitudinal_fissure] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fissura interhemispherica" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "fissura longitudinalis cerebrales" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "fissura longitudinalis cerebri" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "fissura longitudinalis magna" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "hemispheric sulcus" EXACT [FMA:83727] synonym: "interhemispheric fissure" EXACT [FMA:83727] synonym: "longitudinal cerebral fissure" EXACT [FMA:83727] synonym: "longitudinal fissure of hemisphere" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "longitudinal fissure of the cerebrum" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "longitudinal sulcus" EXACT [FMA:83727] synonym: "medial longitudinal fissure" EXACT [FMA:83727] synonym: "sagittal fissure" EXACT [FMA:83727] xref: FMA:83727 xref: NIF_GrossAnatomy:birnlex_4041 xref: OpenCyc:Mx4rwJlWu5wpEbGdrcN5Y29ycA xref: SCTID:369225004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Hemispheres.png/200px-Hemispheres.png xref: ncithesaurus:Longitudinal_Fissure is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002922 name: olfactory trigone namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4042-FMA_74883 def: "The olfactory trigone is a small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_trigone] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "trigonum olfactorium" EXACT [NIF_GrossAnatomy:birnlex_4042] xref: FMA:74883 xref: NIF_GrossAnatomy:birnlex_4042 xref: SCTID:369102007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: ncithesaurus:Trigonum_Olfactorium is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002923 name: posterior parolfactory sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4043-FMA_83745 xref: FMA:83745 xref: NIF_GrossAnatomy:birnlex_4043 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002924 name: terminal nerve namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4044-ZFA_0001356 def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest." [PMID:15821344, Wikipedia:Terminal_nerve, ZFIN:ZDB-PUB-041202-1] comment: PMID:2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.' subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cranial nerve 0" EXACT [Wikipedia:Terminal_nerve] synonym: "cranial nerve zero" EXACT [Wikipedia:Terminal_nerve] synonym: "nervus terminalis" EXACT [ZFA:0001356] xref: EFO:0003678 xref: NIF_GrossAnatomy:birnlex_4044 xref: ZFA:0001356 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0002925 name: trigeminal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4096-FMA_71248 comment: note massive inconsistencies between GO, MA, wikipedia. Part of pons in MA, but this leads to inconsistencies with ABA. See https://sourceforge.net/tracker/?func=detail&aid=3291162&group_id=76834&atid=1205376 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus mesencephalicus nervi trigemini" RELATED [BTO:0001074] synonym: "nucleus mesencephalicus trigeminalis" RELATED [BTO:0001074] synonym: "nucleus tractus mesencephali nervi trigeminalis" RELATED [BTO:0001074] synonym: "trigeminal V nucleus" EXACT [MA:0001028] synonym: "trigeminal nuclear complex nucleus" EXACT [FMA:71247] synonym: "trigeminal nucleus" EXACT [FMA:71248] xref: BM:V xref: BTO:0001074 xref: EV:0100271 xref: FMA:71247 xref: GAID:604 xref: MA:0001028 xref: MESH:A.08.186.211.132.931 xref: NIF_GrossAnatomy:nifext_11 xref: SCTID:280164007 xref: VHOG:0001353 xref: ncithesaurus:Trigeminal_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! brainstem nucleus relationship: part_of UBERON:0000988 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pons [Term] id: UBERON:0002926 name: gustatory epithelium namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4099-FMA_62412 comment: editor note - see also epithelium of tongue and subclasses xref: FMA:62412 xref: NIF_GrossAnatomy:birnlex_4099 is_a: UBERON:0003357 ! epithelium of tongue is_a: UBERON:0006934 ! sensory epithelium relationship: part_of UBERON:0001033 ! gustatory system relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0002928 name: dentate gyrus polymorphic layer namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4128-MA_0002864 xref: MA:0002864 xref: NIF_GrossAnatomy:birnlex_4128 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0002929 name: dentate gyrus pyramidal layer namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_4129-MA_0000948 xref: MA:0000948 is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0002930 name: tectopontine tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_701-FMA_72505 synonym: "fibrae tectopontinae" EXACT [FMA:72505, FMA:TA] synonym: "tectopontine fibers" EXACT [FMA:72505] synonym: "tectopontine fibres" EXACT [FMA:72505] xref: FMA:72505 xref: NIF_GrossAnatomy:birnlex_701 xref: SCTID:3301002 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002931 name: dorsal septal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_704-FMA_61877 xref: FMA:61877 xref: NIF_GrossAnatomy:birnlex_704 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002932 name: trapezoid body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_707-FMA_72487 def: "The trapezoid body is part of the acoustic pathway. It is a bundle of fibers and cells in the pontine tegmentum. It consists of fibers arising from the ventral cochlear nucleus. A collection of nerve cells inside forms a trapezoid nucleus. The superior olivary nucleus is situated on the dorsal surface of the trapezoid body. Most nerve fibers pass directly from the superior olivary nuclei to the inferior colliculus. Axons leaving the ventral cochlear nucleus (VCN) form a broad pathway that crosses under the brain stem in the trapezoid body. A thin pathway, the intermediate acoustic stria, also leaves the VCN, merging with the trapezoid body close to the superior olivary complex, where many of its axons synapse. Axons leaving the dorsal cochlear nucleus (DCN) form the dorsal acoustic stria, which reaches primarily the contralateral dorsal nucleus of the lateral lemniscus and the central nucleus of the inferior colliculus. [WP,unvetted]." [Wikipedia:Trapezoid_body] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BM:TB xref: FMA:72487 xref: NIF_GrossAnatomy:birnlex_707 xref: SCTID:369019006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002933 name: nucleus of anterior commissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_712-FMA_61883 synonym: "anterior commissure nucleus" EXACT [FMA:61883] synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883] synonym: "nucleus of commissura anterior" EXACT [FMA:61883] xref: ABA:BAC xref: BM:Tel-ACN xref: FMA:61883 xref: NIF_GrossAnatomy:birnlex_712 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002934 name: ventral oculomotor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_713-FMA_72422 synonym: "ventral oculomotor cell column" EXACT [FMA:72422] xref: FMA:72422 xref: NIF_GrossAnatomy:birnlex_713 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002935 name: magnocellular part of ventral anterior nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_716-FMA_62192 synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192] synonym: "magnocellular ventral anterior nucleus" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus lateropolaris (magnocellularis)" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus lateropolaris magnocellularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus rostralis lateralis situs perifascicularis" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus thalamicus ventral anterior, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus ventralis anterior, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "pars magnocellularis nuclei ventralis anterior thalami" EXACT [FMA:62192, FMA:TA] synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192] synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventroanterior thalamic nucleus, magnocellular part" EXACT [NIF_GrossAnatomy:birnlex_716] xref: BM:Die-Th-VA-VAmc xref: FMA:62192 xref: NIF_GrossAnatomy:birnlex_716 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002936 name: magnocellular part of red nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_720-FMA_72431 synonym: "paleoruber" EXACT [FMA:72431] synonym: "red nucleus, magnocellular part" EXACT [FMA:72431] xref: FMA:72431 xref: NIF_GrossAnatomy:birnlex_720 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002937 name: parvicellular part of ventral anterior nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_722-FMA_62191 synonym: "nucleus ventralis anterior (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_722] synonym: "nucleus ventralis anterior, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_722] synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191] synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191] synonym: "ventralis anterior (jones)" EXACT [] xref: FMA:62191 xref: NIF_GrossAnatomy:birnlex_722 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002938 name: parvocellular part of red nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_725-FMA_72430 synonym: "neoruber" EXACT [FMA:72430] synonym: "red nucleus, parvocellular part" EXACT [FMA:72430] xref: FMA:72430 xref: NIF_GrossAnatomy:birnlex_725 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002939 name: ventral posteroinferior nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_728-FMA_62199 synonym: "nucleus ventralis posterior inferior thalami" EXACT [FMA:62199, FMA:TA] synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199] synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199] synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199] xref: BM:Die-Th-VPI xref: BTO:0002464 xref: BTO:0004373 xref: BTO:0004374 xref: EV:0100209 xref: FMA:62199 xref: NIF_GrossAnatomy:birnlex_728 xref: SCTID:369173003 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002940 name: anterior column of fornix namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_731-FMA_61966 synonym: "anterior crus of fornix" EXACT [FMA:61966] synonym: "anterior pillar of fornix" EXACT [FMA:61966] xref: FMA:61966 xref: NIF_GrossAnatomy:birnlex_731 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002941 name: capsule of red nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_732-FMA_72450 synonym: "red nuclear capsule" EXACT [FMA:72450] xref: FMA:72450 xref: NIF_GrossAnatomy:birnlex_732 xref: SCTID:369245007 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002942 name: ventral posterolateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_737-FMA_62200 def: "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]." [Wikipedia:Ventral_posterolateral_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nucleus ventralis posterior lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "nucleus ventralis posterolateralis" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "nucleus ventralis posterolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "nucleus ventralis thalami posterior lateralis" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200] synonym: "posterolateral ventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200] synonym: "ventral posterolateral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200] xref: ABA:VPL xref: FMA:62200 xref: NIF_GrossAnatomy:birnlex_737 xref: SCTID:369171001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0002945 [Term] id: UBERON:0002943 name: lingual gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_740-FMA_61904 def: "The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. Shunt [WP,unvetted]." [Wikipedia:Lingual_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gyrus occipitotemporalis medialis" EXACT [FMA:61904, FMA:TA] synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904] synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904] synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904] xref: FMA:61904 xref: NIF_GrossAnatomy:birnlex_740 xref: SCTID:279203007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray727_lingual_gyrus.png/200px-Gray727_lingual_gyrus.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002944 name: spinothalamic tract of medulla namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_741-FMA_72644 def: "Part of spinothalamic tract that is in the medulla" [NIF_GrossAnatomy:birnlex_741] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "spinothalamic tract" BROAD [FMA:72644, NIF_GrossAnatomy:birnlex_741] xref: FMA:72644 xref: GAID:703 xref: MESH:A.08.186.854.761 xref: NIF_GrossAnatomy:birnlex_741 xref: SCTID:360570003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002945 name: ventral posteromedial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_743-FMA_62202 def: "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_posteromedial_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202] synonym: "arcuate nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "arcuate nucleus-3" EXACT [FMA:62202] synonym: "nucleus arcuatus thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus semilunaris thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventralis posterior medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventralis posteromedialis" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventralis posteromedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventrocaudalis anterior internus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202] synonym: "posteromedial ventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "semilunar nucleus" EXACT [FMA:62202] synonym: "thalamic gustatory nucleus" EXACT [FMA:62202] synonym: "ventral posterior medial nucleus" EXACT [FMA:62202] synonym: "ventral posterior medial nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202] synonym: "ventral posteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "ventral posteromedial thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "ventroposteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] xref: ABA:VPM xref: BM:Die-Th-VPM xref: FMA:62202 xref: NIF_GrossAnatomy:birnlex_743 xref: SCTID:369172008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002596 ! ventral posterior nucleus property_value: "spatially_disjoint_from" UBERON:0002942 [Term] id: UBERON:0002946 name: regional part of cerebellum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_748-FMA_256150 def: "A regional part of brain that is part of a cerebellum [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of cerebellum" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "biological structure of brain of cerebellum" EXACT [OBOL:automatic] synonym: "biological structure of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cerebellum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of epencephalon-1" EXACT [OBOL:automatic] synonym: "brain biological structure of cerebellum" EXACT [OBOL:automatic] synonym: "brain biological structure of epencephalon-1" EXACT [OBOL:automatic] synonym: "cerebellum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cerebellum biological structure of brain" EXACT [OBOL:automatic] synonym: "cerebellum brain anatomical structure" EXACT [OBOL:automatic] synonym: "cerebellum brain biological structure" EXACT [OBOL:automatic] synonym: "cerebellum neuraxis segment" EXACT [OBOL:automatic] synonym: "cerebellum regional part of brain" EXACT [OBOL:automatic] synonym: "cerebellum segment of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 anatomical structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 biological structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 brain anatomical structure" EXACT [OBOL:automatic] synonym: "epencephalon-1 brain biological structure" EXACT [OBOL:automatic] synonym: "epencephalon-1 neuraxis segment" EXACT [OBOL:automatic] synonym: "epencephalon-1 regional part of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of cerebellum" EXACT [OBOL:automatic] synonym: "neuraxis segment of epencephalon-1" EXACT [OBOL:automatic] synonym: "regional part of brain of cerebellum" EXACT [OBOL:automatic] synonym: "regional part of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "segment of brain of cerebellum" EXACT [OBOL:automatic] synonym: "segment of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "segment of cerebellum" EXACT [NIF_GrossAnatomy:birnlex_748] xref: FMA:256150 xref: NIF_GrossAnatomy:birnlex_748 is_a: UBERON:0002680 ! regional part of metencephalon [Term] id: UBERON:0002947 name: frontal operculum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_751-FMA_74886 xref: FMA:74886 xref: NIF_GrossAnatomy:birnlex_751 xref: SCTID:362352005 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010262 ! operculum of brain [Term] id: UBERON:0002948 name: superior occipital gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_758-FMA_61901 synonym: "gyrus occipitalis primus" EXACT [FMA:61901] xref: FMA:61901 xref: NIF_GrossAnatomy:birnlex_758 xref: SCTID:279182006 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002949 name: tectospinal tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_759-FMA_72620 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "held's bundle" EXACT [FMA:72620] synonym: "tectospinal pathway" EXACT [FMA:72620] xref: BM:TSp xref: FMA:72620 xref: NIF_GrossAnatomy:birnlex_759 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray670.png/200px-Gray670.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002950 name: regional part of midbrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997 def: "A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of midbrain" EXACT [OBOL:automatic] synonym: "biological structure of brain of midbrain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of midbrain" EXACT [OBOL:automatic] synonym: "brain biological structure of midbrain" EXACT [OBOL:automatic] synonym: "midbrain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "midbrain biological structure of brain" EXACT [OBOL:automatic] synonym: "midbrain brain anatomical structure" EXACT [OBOL:automatic] synonym: "midbrain brain biological structure" EXACT [OBOL:automatic] synonym: "midbrain neuraxis segment" EXACT [OBOL:automatic] synonym: "midbrain regional part of brain" EXACT [OBOL:automatic] synonym: "midbrain segment" EXACT [FMA:61997] synonym: "midbrain segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of midbrain" EXACT [OBOL:automatic] synonym: "regional part of brain of midbrain" EXACT [OBOL:automatic] synonym: "segment of brain of midbrain" EXACT [OBOL:automatic] synonym: "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763] xref: FMA:61997 xref: NIF_GrossAnatomy:birnlex_763 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002951 name: regional part of intermediate hypothalamic region namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_767-FMA_62310 def: "A regional part of brain that is part of a intermediate hypothalamic region [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "biological structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "biological structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "brain anatomical structure of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "brain biological structure of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "brain biological structure of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area biological structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area brain anatomical structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area brain biological structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area neuraxis segment" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area regional part of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area segment of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region biological structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region brain anatomical structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region brain biological structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region neuraxis segment" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region regional part of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region segment" EXACT [FMA:62310] synonym: "intermediate hypothalamic region segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "neuraxis segment of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "regional part of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "regional part of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "segment of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of intermediate hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_767] xref: FMA:62310 xref: NIF_GrossAnatomy:birnlex_767 is_a: UBERON:0003048 ! regional part of hypothalamus [Term] id: UBERON:0002952 name: intermediate acoustic stria namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_768-FMA_72497 synonym: "commissure of held" EXACT [] synonym: "intermediate acoustic stria (held)" EXACT [NIF_GrossAnatomy:birnlex_768] synonym: "intermediate acoustic stria of held" EXACT [] xref: FMA:72497 xref: NIF_GrossAnatomy:birnlex_768 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002953 name: lateral lemniscus namespace: uberon alt_id: UBERON:0003042 alt_id: UBERON:NIF_GrossAnatomy_birnlex_774-FMA_72502 alt_id: UBERON:NIF_GrossAnatomy_birnlex_976-FMA_72502 def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Lateral_lemniscus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral fillet" EXACT [FMA:72502] xref: BM:Pons-LL xref: FMA:72502 xref: NIF_GrossAnatomy:birnlex_976 xref: SCTID:362399003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG is_a: UBERON:0002316 ! white matter is_a: UBERON:0003001 ! lemniscus is_a: UBERON:0003544 ! brain white matter [Term] id: UBERON:0002954 name: dorsal hypothalamic area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_777-FMA_62339 xref: BM:Die-Hy-HDA xref: FMA:62339 xref: NIF_GrossAnatomy:birnlex_777 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002955 name: rhomboidal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_778-FMA_62154 synonym: "nucleus commissuralis rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis" RELATED [BTO:0002458] synonym: "rhomboid nucleus" EXACT [FMA:62154] synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154] xref: ABA:RH xref: BTO:0002458 xref: FMA:62154 xref: NIF_GrossAnatomy:birnlex_778 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0001922 property_value: "spatially_disjoint_from" UBERON:0001923 property_value: "spatially_disjoint_from" UBERON:0001924 property_value: "spatially_disjoint_from" UBERON:0003036 [Term] id: UBERON:0002956 name: granular layer of cerebellar cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_779-FMA_83140 def: "The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO:0021681] synonym: "cerebellar granular layer" EXACT [GO:0021681] synonym: "cerebellar granule cell layer" EXACT [] synonym: "cerebellar granule layer" EXACT [] synonym: "cerebellum granule cell layer" EXACT [MA:0000993] synonym: "cerebellum granule layer" EXACT [] synonym: "granule cell layer of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_779] xref: ABA:CBXgr xref: BTO:0004425 xref: FMA:83140 xref: MA:0000993 xref: NIF_GrossAnatomy:birnlex_779 xref: ncithesaurus:Granular_Layer_of_the_Cerebellum is_a: UBERON:0004130 ! cerebellar layer relationship: part_of UBERON:0002129 ! cerebellar cortex property_value: "spatially_disjoint_from" UBERON:0002979 [Term] id: UBERON:0002957 name: caudal central oculomotor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_780-FMA_72426 synonym: "caudal central nucleus" EXACT [FMA:72426] synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426] xref: FMA:72426 xref: NIF_GrossAnatomy:birnlex_780 xref: SCTID:369239004 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002958 name: medial lemniscus of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_781-FMA_72503 def: "A medial lemniscus that is part of a pons [Obol]." [OBOL:automatic] synonym: "medial lemniscus of pons of varolius" EXACT [OBOL:automatic] synonym: "pons medial lemniscus" EXACT [OBOL:automatic] synonym: "pons of varolius medial lemniscus" EXACT [OBOL:automatic] xref: FMA:72503 xref: NIF_GrossAnatomy:birnlex_781 is_a: UBERON:0003002 ! medial lemniscus [Term] id: UBERON:0002959 name: subfascicular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_783-FMA_62155 xref: FMA:62155 xref: NIF_GrossAnatomy:birnlex_783 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002960 name: central oculomotor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_786-FMA_72425 synonym: "central nucleus of perlia" EXACT [] synonym: "nucleus of perlia" EXACT [] synonym: "spitzka's nucleus" EXACT [FMA:72425] xref: FMA:72425 xref: NIF_GrossAnatomy:birnlex_786 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002961 name: archicortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_787-FMA_62424 def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "archipallium" EXACT [FMA:62424] xref: EHDAA2:0004496 xref: FMA:62424 xref: NIF_GrossAnatomy:birnlex_787 xref: SCTID:423918008 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0002962 name: adductor pollicis namespace: uberon def: "In human anatomy, the adductor pollicis muscle is a muscle in the hand that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]." [Wikipedia:Adductor_pollicis_muscle] synonym: "adductor pollicis muscle" EXACT [Wikipedia:Adductor_pollicis_muscle] xref: FMA:37380 xref: SCTID:181649004 is_a: UBERON:0000952 ! adductor muscle is_a: UBERON:0001500 ! muscle of hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0002963 name: caudal pontine reticular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_792-FMA_72469 def: "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep. [WP,unvetted]." [Wikipedia:Caudal_pontine_reticular_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469] xref: ABA:PRNc xref: FMA:72469 xref: NIF_GrossAnatomy:birnlex_792 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007413 ! nucleus of pontine reticular formation property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002964 name: dorsal oculomotor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_793-FMA_62442 synonym: "dorsal oculomotor cell column" EXACT [FMA:62442] xref: FMA:62442 xref: NIF_GrossAnatomy:birnlex_793 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002965 name: rostral intralaminar nuclei namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_794-FMA_62164 synonym: "nuclei intralaminares rostrales" EXACT [NIF_GrossAnatomy:birnlex_794] synonym: "rostral intralaminar nuclear group" EXACT [FMA:62164] synonym: "rostral intralaminar nuclei" EXACT [FMA:62164] xref: FMA:62164 xref: NIF_GrossAnatomy:birnlex_794 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002966 name: regional part of midbrain tectum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_795-FMA_62398 def: "A regional part of brain that is part of a midbrain tectum [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of tectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of tectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of midbrain tectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of neuraxis tectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of tectum" EXACT [OBOL:automatic] synonym: "brain biological structure of midbrain tectum" EXACT [OBOL:automatic] synonym: "brain biological structure of neuraxis tectum" EXACT [OBOL:automatic] synonym: "brain biological structure of tectum" EXACT [OBOL:automatic] synonym: "midbrain tectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "midbrain tectum biological structure of brain" EXACT [OBOL:automatic] synonym: "midbrain tectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "midbrain tectum brain biological structure" EXACT [OBOL:automatic] synonym: "midbrain tectum neuraxis segment" EXACT [OBOL:automatic] synonym: "midbrain tectum regional part of brain" EXACT [OBOL:automatic] synonym: "midbrain tectum segment" EXACT [FMA:62398] synonym: "midbrain tectum segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of midbrain tectum" EXACT [OBOL:automatic] synonym: "neuraxis segment of neuraxis tectum" EXACT [OBOL:automatic] synonym: "neuraxis segment of tectum" EXACT [OBOL:automatic] synonym: "neuraxis tectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "neuraxis tectum biological structure of brain" EXACT [OBOL:automatic] synonym: "neuraxis tectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "neuraxis tectum brain biological structure" EXACT [OBOL:automatic] synonym: "neuraxis tectum neuraxis segment" EXACT [OBOL:automatic] synonym: "neuraxis tectum regional part of brain" EXACT [OBOL:automatic] synonym: "neuraxis tectum segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "regional part of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "regional part of brain of tectum" EXACT [OBOL:automatic] synonym: "segment of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "segment of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "segment of brain of tectum" EXACT [OBOL:automatic] synonym: "segment of midbrain tectum" EXACT [NIF_GrossAnatomy:birnlex_795] synonym: "tectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "tectum biological structure of brain" EXACT [OBOL:automatic] synonym: "tectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "tectum brain biological structure" EXACT [OBOL:automatic] synonym: "tectum neuraxis segment" EXACT [OBOL:automatic] synonym: "tectum regional part of brain" EXACT [OBOL:automatic] synonym: "tectum segment of brain" EXACT [OBOL:automatic] xref: FMA:62398 xref: NIF_GrossAnatomy:birnlex_795 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002967 name: cingulate gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_798-FMA_62434 def: "A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control." [Wikipedia:Cingulate_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cingulate area" EXACT [FMA:62434] synonym: "cingulate region" EXACT [FMA:62434] synonym: "falciform lobe" EXACT [FMA:62434] synonym: "upper limbic gyrus" EXACT [FMA:62434] xref: BM:Tel-CG xref: BTO:0003976 xref: FMA:62434 xref: NIF_GrossAnatomy:birnlex_798 xref: SCTID:279208003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0000349 ! limbic system [Term] id: UBERON:0002968 name: central gray substance of pons namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_799-FMA_72470 synonym: "central gray of pons" EXACT [FMA:72470] synonym: "pontine central gray" EXACT [FMA:72470] xref: ABA:PCG xref: FMA:72470 xref: NIF_GrossAnatomy:birnlex_799 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0003011 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0002969 name: inferior temporal sulcus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_800-FMA_83784 synonym: "inferior temporal sulcus-1" EXACT [FMA:83784] synonym: "middle temporal sulcus (szikla)" EXACT [] synonym: "second temporal sulcus" EXACT [FMA:83784] synonym: "sulcus t2" EXACT [FMA:83784] xref: BM:Tel-Cx-ITS xref: FMA:83784 xref: NIF_GrossAnatomy:birnlex_800 xref: SCTID:279346007 xref: ncithesaurus:Inferior_Temporal_Sulcus is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002970 name: intermediate oculomotor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_803-FMA_72420 synonym: "intermediate oculomotor cell column" EXACT [FMA:72420] xref: FMA:72420 xref: NIF_GrossAnatomy:birnlex_803 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002971 name: periolivary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_804-MA_0002757 synonym: "dorsal periolivary nucleus" EXACT [FMA:72475] synonym: "nuclei periolivares" EXACT [FMA:72475, FMA:TA] synonym: "pperi-olivary nuclei" EXACT [FMA:72475] xref: FMA:72475 xref: MA:0002757 xref: NIF_GrossAnatomy:birnlex_804 is_a: UBERON:0002680 ! regional part of metencephalon relationship: part_of UBERON:0002128 ! superior olivary complex relationship: part_of UBERON:0007247 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! superior olivary nucleus [Term] id: UBERON:0002972 name: centromedian nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_805-FMA_62165 def: "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]." [Wikipedia:Centromedian_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165] synonym: "central nucleus-1" EXACT [FMA:62165] synonym: "centre median nucleus" EXACT [FMA:62165] synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165] synonym: "centromedian thalamic nucleus" EXACT [FMA:62165] synonym: "centrum medianum" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "centrum medianum thalami" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "noyau centre median of luys" EXACT [] synonym: "nucleus centralis centralis" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centralis thalami (hassler)" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centri mediani thalami" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centromedianus" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centromedianus thalami" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centrum medianum" EXACT [NIF_GrossAnatomy:birnlex_805] xref: EV:0100215 xref: FMA:62165 xref: NIF_GrossAnatomy:birnlex_805 xref: SCTID:279162007 xref: ncithesaurus:Centromedian_Nucleus_of_the_Thalamus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002733 ! intralaminar nuclear group [Term] id: UBERON:0002973 name: parahippocampal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_807-FMA_61918 def: "a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]." [Wikipedia:Parahippocampal_gyrus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hippocampal gyrus" EXACT [FMA:61918] xref: BTO:0004380 xref: EV:0100181 xref: FMA:61918 xref: GAID:634 xref: MESH:A.08.186.211.577.710 xref: NIF_GrossAnatomy:birnlex_807 xref: SCTID:279205000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG xref: ncithesaurus:Parahippocampal_Gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002974 name: molecular layer of cerebellar cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_810-FMA_83897 def: "The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells" [GO:0021679] comment: Taxon notes: Compare with ZFA:0000636 - cerebellar crest, which is also composed of parallel fibers but located in a more restricted nucleus within the cerebellum synonym: "cerebellar molecular layer" EXACT [GO:0021679] synonym: "cerebellum molecular cell layer" EXACT [] synonym: "cerebellum molecular layer" EXACT [] xref: FMA:83897 xref: MA:0000996 xref: NIF_GrossAnatomy:birnlex_810 xref: SCTID:369045002 xref: ncithesaurus:Molecular_Layer_of_the_Cerebellum is_a: UBERON:0004130 ! cerebellar layer relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002975 name: medial oculomotor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_813-FMA_72421 synonym: "medial oculomotor cell column" EXACT [FMA:72421] xref: FMA:72421 xref: NIF_GrossAnatomy:birnlex_813 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002976 name: preolivary nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_814-FMA_72474 synonym: "preolivary nuclei" EXACT [FMA:72474] xref: FMA:72474 xref: NIF_GrossAnatomy:birnlex_814 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007247 ! superior olivary nucleus relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002977 name: triangular septal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_816-FMA_61880 synonym: "nucleus triangularis septi" EXACT [FMA:61880, FMA:TA] synonym: "triangular nucleus of septum" EXACT [FMA:61880] synonym: "triangular nucleus septum (cajal)" EXACT [NIF_GrossAnatomy:birnlex_816] xref: ABA:TRS xref: BM:Tel-Spt-STN xref: FMA:61880 xref: NIF_GrossAnatomy:birnlex_816 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0007629 [Term] id: UBERON:0002978 name: oral part of ventral lateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_817-FMA_62193 synonym: "nucleus lateralis oralis situs principalis" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "nucleus ventralis lateralis, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "nucleus ventrooralis externus, anterior part (van buren)" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "subnucleus rostralis" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193] synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193] synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193] synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193] xref: FMA:62193 xref: NIF_GrossAnatomy:birnlex_817 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002979 name: Purkinje cell layer of cerebellar cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_818-FMA_83896 def: "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO:0021680] synonym: "Purkinje cell layer" EXACT [FMA:83896] synonym: "cerebellar Purkinje cell layer" EXACT [FMA:83896, GO:0021694] synonym: "cerebellum Purkinje cell layer" EXACT [] synonym: "cerebellum Purkinje layer" EXACT [] xref: ABA:CBXpu xref: BTO:0004909 xref: FMA:83896 xref: MA:0000997 xref: NIF_GrossAnatomy:birnlex_818 xref: ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum is_a: UBERON:0004130 ! cerebellar layer relationship: part_of UBERON:0002129 ! cerebellar cortex property_value: "spatially_disjoint_from" UBERON:0002956 [Term] id: UBERON:0002980 name: opercular part of inferior frontal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_823-FMA_61981 synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981] synonym: "pars opercularis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_823] synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981] xref: FMA:61981 xref: NIF_GrossAnatomy:birnlex_823 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002981 name: pulvinar nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_824-FMA_62178 def: "The pulvinar is the caudal-most nucleus of the thalamus. The pulvinar is usually grouped as one of the lateral thalamic nuclei. [WP,unvetted]." [Wikipedia:Pulvinar] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nuclei pulvinares" EXACT [FMA:62178, FMA:TA] synonym: "pulvinar" EXACT [FMA:62178] synonym: "pulvinar nuclei" EXACT [FMA:62178] synonym: "pulvinar thalami" EXACT [NIF_GrossAnatomy:birnlex_824] xref: BM:Die-Th-Pl xref: BTO:0004352 xref: EV:0100213 xref: FMA:62178 xref: GAID:662 xref: MESH:A.08.186.211.730.385.826.701.485.600 xref: NIF_GrossAnatomy:birnlex_824 xref: SCTID:279157006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002982 name: inferior pulvinar nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_830-FMA_62183 synonym: "nucleus pulvinaris inferior" EXACT [NIF_GrossAnatomy:birnlex_830] synonym: "nucleus pulvinaris inferior thalami" EXACT [NIF_GrossAnatomy:birnlex_830] synonym: "nucleus pulvinaris thalami, pars inferior" EXACT [NIF_GrossAnatomy:birnlex_830] xref: BM:Die-Th-Pl-Pli xref: FMA:62183 xref: NIF_GrossAnatomy:birnlex_830 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002983 name: lateral posterior nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_835-FMA_62177 synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177] synonym: "lateral posterior nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177] synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177] synonym: "nucleus dorso-caudalis" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus dorsocaudalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus lateralis posterior" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus lateralis posterior thalami" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus lateralis thalami posterior" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177] xref: ABA:LP xref: BM:Die-Th-LP xref: BTO:0004351 xref: EV:0100212 xref: FMA:62177 xref: NIF_GrossAnatomy:birnlex_835 xref: SCTID:279155003 xref: ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0002709 property_value: "spatially_disjoint_from" UBERON:0003033 [Term] id: UBERON:0002984 name: lateral dorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_838-FMA_62176 synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176] synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176] synonym: "laterodorsal nucleus nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "laterodorsal nucleus thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176] synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176] synonym: "nucleus dorsalis lateralis thalami" EXACT [FMA:62176, FMA:TA] synonym: "nucleus dorsalis superficialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus dorsolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis dorsalis of thalamus" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis thalami dorsalis" EXACT [NIF_GrossAnatomy:birnlex_838] xref: ABA:LD xref: BM:Die-Th-LD xref: BTO:0004349 xref: BTO:0004350 xref: EV:0100211 xref: FMA:62176 xref: NIF_GrossAnatomy:birnlex_838 xref: SCTID:279154004 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0002679 property_value: "spatially_disjoint_from" UBERON:0002681 property_value: "spatially_disjoint_from" UBERON:0002685 [Term] id: UBERON:0002985 name: ventral nucleus of medial geniculate body namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_845-FMA_62217 synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217] synonym: "medial nucleus of medial geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus geniculatus medialis fasciculosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus geniculatus medialis pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus ventralis corporis geniculati medialis" EXACT [FMA:62217, FMA:TA] synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217] synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217] xref: ABA:MGv xref: BM:Die-Th-MG-MGv xref: BTO:0002671 xref: FMA:62217 xref: NIF_GrossAnatomy:birnlex_845 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001927 ! medial geniculate body property_value: "spatially_disjoint_from" UBERON:0002758 property_value: "spatially_disjoint_from" UBERON:0002759 [Term] id: UBERON:0002986 name: neurofilament namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_846-FMA_63859 def: "." [Wikipedia:Neurofilament] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "neuronal intermediate filament" EXACT [FMA:63859] xref: FMA:63859 xref: GO:0005883 xref: NIF_GrossAnatomy:birnlex_846 xref: NIF_Subcellular:sao1316272517 xref: ncithesaurus:Neurofilament is_a: UBERON:0003000 ! intermediate filament [Term] id: UBERON:0002987 name: anterior spinocerebellar tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_848-FMA_72642 def: "The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted]." [Wikipedia:Anterior_spinocerebellar_tract] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "gower's tract" EXACT [NIF_GrossAnatomy:birnlex_848] synonym: "gowers' tract" EXACT [FMA:72642] synonym: "ventral spinocerebellar tract" EXACT [FMA:72642] xref: FMA:72642 xref: NIF_GrossAnatomy:birnlex_848 xref: SCTID:369285001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0005413 ! spinocerebellar tract [Term] id: UBERON:0002988 name: first dorsal interosseous of hand namespace: uberon synonym: "abductor indicis" EXACT [FMA:37424] xref: FMA:37424 xref: SCTID:245003002 is_a: UBERON:0001503 ! dorsal interosseous of hand [Term] id: UBERON:0002989 name: anconeus namespace: uberon def: "small muscle on the posterior aspect of the elbow joint." [Wikipedia:Anconeus_muscle] comment: Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm. synonym: "anconeus muscle" EXACT [Wikipedia:Anconeus_muscle] xref: FMA:37704 xref: SCTID:244993003 is_a: UBERON:0004255 ! forelimb stylopod muscle [Term] id: UBERON:0002990 name: mammillothalamic tract of hypothalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_855-FMA_62059 xref: FMA:62059 xref: NIF_GrossAnatomy:birnlex_855 xref: SCTID:369139008 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002991 name: supramammillary commissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_859-FMA_62056 synonym: "commissure of forel" EXACT [] synonym: "commissure y" EXACT [FMA:62056] synonym: "postmammillary decussation" EXACT [FMA:62056] synonym: "supramammillary decussation" EXACT [FMA:62056] xref: FMA:62056 xref: NIF_GrossAnatomy:birnlex_859 xref: SCTID:369148003 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002992 name: paratenial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_860-FMA_62151 def: "One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris." [BTO:0002457] synonym: "nucleus parataenialis" EXACT [BTO:0002457, FMA:62151, FMA:TA] synonym: "nucleus parataenialis thalami" RELATED [BTO:0002457] synonym: "parataenial nucleus" EXACT [FMA:62151] synonym: "paratenial nucleus of thalamus" RELATED [BTO:0002457] synonym: "paratenial thalamic nucleus" EXACT [FMA:62151] xref: ABA:PT xref: BTO:0002457 xref: FMA:62151 xref: NIF_GrossAnatomy:birnlex_860 xref: SCTID:422800004 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! nucleus of thalamus relationship: part_of UBERON:0002705 ! midline nuclear group property_value: "spatially_disjoint_from" UBERON:0001920 [Term] id: UBERON:0002993 name: inferior central nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_861-FMA_72466 comment: todo - compare with UBERON:0002881 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior central nucleus (of roller)" EXACT [FMA:72466] synonym: "inferior central nucleus of raphe" EXACT [FMA:72466] synonym: "inferior central tegmental nucleus" EXACT [FMA:72466] xref: FMA:72466 xref: NIF_GrossAnatomy:birnlex_861 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007413 ! nucleus of pontine reticular formation relationship: part_of UBERON:0002573 ! pontine reticular formation [Term] id: UBERON:0002994 name: nucleus of pretectal area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_864-FMA_72401 synonym: "pretectal area nucleus" EXACT [FMA:72401] xref: FMA:72401 xref: NIF_GrossAnatomy:birnlex_864 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! regional part of pretectal region is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002995 name: substantia nigra pars lateralis namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_866-MA_0001065 def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)." [NIF_GrossAnatomy:birnlex_866] comment: _:comment___:_:@___:_:source__NIF___:.__disjointness violation - relationship: part_of UBERON:0001966 synonym: "Substantia nigra, lateral part" EXACT [ABA:SNI] synonym: "lateral part of substantia nigra" EXACT [FMA:76844] synonym: "pars lateralis" EXACT [NIF_GrossAnatomy:birnlex_866] xref: ABA:SNI xref: FMA:76844 xref: MA:0001065 xref: NIF_GrossAnatomy:birnlex_866 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0002038 ! substantia nigra property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0003040 [Term] id: UBERON:0002996 name: nucleus of optic tract namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_868-FMA_72403 synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403] synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403] synonym: "nucleus of the optic tract" EXACT [NIF_GrossAnatomy:birnlex_868] synonym: "optic tract nucleus" EXACT [FMA:72403] xref: ABA:NOT xref: FMA:72403 xref: NIF_GrossAnatomy:birnlex_868 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! regional part of pretectal region is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region property_value: "spatially_disjoint_from" UBERON:0002565 property_value: "spatially_disjoint_from" UBERON:0002711 property_value: "spatially_disjoint_from" UBERON:0006848 [Term] id: UBERON:0002997 name: nucleus of medial eminence namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_870-FMA_72467 synonym: "medial eminence nucleus" EXACT [FMA:72467] synonym: "nucleus of eminentia teres" EXACT [FMA:72467] xref: FMA:72467 xref: NIF_GrossAnatomy:birnlex_870 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002998 name: inferior frontal gyrus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_873-FMA_61860 def: "The inferior frontal gyrus is a gyrus of the frontal lobe of the human brain. Its superior border is the inferior frontal sulcus, its inferior border the lateral fissure, and its posterior border is the inferior precentral sulcus. Above it is the middle frontal gyrus, behind it the precentral gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_gyrus] comment: ncit has two classes, but these are exact synonyms in FMA subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "inferior frontal convolution" EXACT [FMA:61860] xref: BTO:0004835 xref: FMA:61860 xref: NIF_GrossAnatomy:birnlex_873 xref: SCTID:362333004 xref: ncithesaurus:Inferior_Frontal_Convolution xref: ncithesaurus:Inferior_Frontal_Gyrus is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002999 name: oral pontine reticular nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_875-FMA_72468 def: "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]." [Wikipedia:Oral_pontine_reticular_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468] xref: ABA:PRNv xref: FMA:72468 xref: NIF_GrossAnatomy:birnlex_875 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007413 ! nucleus of pontine reticular formation relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0003000 name: intermediate filament namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_879-FMA_63851 def: "." [Wikipedia:Intermediate_filament] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:63851 xref: GAID:1079 xref: GO:0005882 xref: MESH:A.11.284.195.190.750.410 xref: NIF_GrossAnatomy:birnlex_879 xref: NIF_Subcellular:sao952483289 xref: ncithesaurus:Intermediate_Filament is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0003001 name: lemniscus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_881-FMA_76742 def: "A bundle or band of sensory nerve fibers. ribbon, from Greek lemniskos." [NIF_GrossAnatomy:birnlex_881, Wikipedia:Lemniscus_(anatomy)] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:76742 xref: NIF_GrossAnatomy:birnlex_881 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0003002 name: medial lemniscus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_887-FMA_83675 def: "The medial lemniscus, also known as Reil's band or Reil's ribbon, is a pathway in the brainstem that carries sensory information from the gracile and cuneate nuclei to the thalamus. [WP,unvetted]." [Wikipedia:Medial_lemniscus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BM:LM xref: FMA:83675 xref: NIF_GrossAnatomy:birnlex_887 xref: SCTID:362398006 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png is_a: UBERON:0002316 ! white matter is_a: UBERON:0003001 ! lemniscus is_a: UBERON:0003544 ! brain white matter [Term] id: UBERON:0003003 name: microfilament namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_888-FMA_63850 def: "." [Wikipedia:Microfilament] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "actin filament" EXACT [FMA:63850] synonym: "microfilament" EXACT [FMA:63850] synonym: "microfilamentum" EXACT [FMA:63850] xref: FMA:63850 xref: GAID:1080 xref: GO:0005884 xref: MESH:A.11.284.195.190.750.510 xref: NIF_GrossAnatomy:birnlex_888 xref: NIF_Subcellular:sao2006047981 xref: ncithesaurus:Actin_Filament is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0003004 name: median raphe nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_889-FMA_72465 def: "The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]." [Wikipedia:Median_raphe_nucleus, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855] comment: TODO: The term medial raphe nucleus refers to a composite structure that consists of the superior central nucleus and the inferior central nucleus of the pontine reticular formation ( Carpenter-1983 )[http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=h&ID=1391] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "MRN" EXACT [] synonym: "cell group b8" EXACT [] synonym: "medial raphe nucleus" EXACT [] synonym: "median nucleus of the raphe" EXACT [FMA:72465] synonym: "nucleus raphes medianus" EXACT [FMA:72465, FMA:TA] synonym: "superior central nucleus" EXACT [FMA:72465] synonym: "superior central nucleus raphe" EXACT [FMA:72465] synonym: "superior central tegmental nucleus" EXACT [FMA:72465] xref: ABA:CS xref: BM:MR xref: FMA:72465 xref: NIF_GrossAnatomy:birnlex_889 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007415 ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 ! midbrain reticular formation relationship: part_of UBERON:0004684 ! raphe nuclei property_value: "spatially_disjoint_from" UBERON:0002047 property_value: "spatially_disjoint_from" UBERON:0002148 property_value: "spatially_disjoint_from" UBERON:0002267 property_value: "spatially_disjoint_from" UBERON:0002587 [Term] id: UBERON:0003005 name: dorsal longitudinal fasciculus of midbrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_893-FMA_72453 def: "A dorsal longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of midbrain" EXACT [OBOL:automatic] synonym: "midbrain bundle of Schutz" EXACT [OBOL:automatic] synonym: "midbrain dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "midbrain fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "midbrain posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of midbrain" EXACT [OBOL:automatic] xref: FMA:72453 xref: NIF_GrossAnatomy:birnlex_893 is_a: UBERON:0003045 ! dorsal longitudinal fasciculus relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003006 name: dorsal nucleus of lateral lemniscus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_894-FMA_72483 synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483] synonym: "nucleus of the lateral lemniscus, dorsal part" EXACT [ABA:NLLd] synonym: "nucleus posterior lemnisci lateralis" EXACT [FMA:72483, FMA:TA] synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483] xref: ABA:NLLd xref: BM:LLD xref: FMA:72483 xref: NIF_GrossAnatomy:birnlex_894 is_a: UBERON:0006840 ! nucleus of lateral lemniscus [Term] id: UBERON:0003007 name: lateral parabrachial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_897-FMA_72481 def: "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Lateral_parabrachial_nucleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FMA:72481 xref: NIF_GrossAnatomy:birnlex_897 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003008 name: dorsal longitudinal fasciculus of hypothalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_898-FMA_62063 def: "A dorsal longitudinal fasciculus that is part of a hypothalamus [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of hypothalamus" EXACT [OBOL:automatic] synonym: "bundle of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "bundle of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of hypothalamus" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "hypothalamus bundle of Schutz" EXACT [OBOL:automatic] synonym: "hypothalamus dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "hypothalamus fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "hypothalamus posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of hypothalamus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area bundle of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region bundle of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region posterior longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:62063 xref: NIF_GrossAnatomy:birnlex_898 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003045 ! dorsal longitudinal fasciculus is_a: UBERON:0003048 ! regional part of hypothalamus is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0003009 name: dorsal tegmental decussation namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_901-FMA_72451 synonym: "Meynert's decussation" EXACT [FMA:72451] synonym: "decussatio tegmentalis posterior" EXACT [FMA:72451, FMA:TA] synonym: "dorsal fountain decussation" EXACT [FMA:72451] synonym: "fountain decussation of Meynert" EXACT [] synonym: "posterior tegmental decussation" EXACT [FMA:72451] xref: FMA:72451 xref: NIF_GrossAnatomy:birnlex_901 xref: SCTID:369248009 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003010 name: lateral pes lemniscus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_902-FMA_72459 synonym: "deep pes lemniscus" EXACT [FMA:72459] synonym: "lateral pontine bundle" EXACT [FMA:72459] synonym: "laterale haubenfussschleife" EXACT [] synonym: "laterale pontine buendel" EXACT [] xref: FMA:72459 xref: NIF_GrossAnatomy:birnlex_902 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003011 name: facial motor nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_903-FMA_54582 def: "The facial motor nucleus is a collection of neurons in the brainstem that belong to the facial nerve. These lower motor neurons innervate the muscles of facial expression and the stapedius. [WP,unvetted]." [Wikipedia:Facial_motor_nucleus] comment: see comments for facial nucleus. also check ZFA/pons subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582] synonym: "facial motor nucleus" EXACT [FMA:54582] synonym: "facial nerve motor nucleus" EXACT [ZFA:0000206] synonym: "facial nucleus" RELATED [Wikipedia:Facial_nucleus] synonym: "motor nucleus VII" EXACT [ZFA:0000206] synonym: "motor nucleus of VII" EXACT [FMA:54582] synonym: "motor nucleus of facial nerve" EXACT [FMA:54582] synonym: "nVII" EXACT [ZFA:0000206] synonym: "nucleus motorius nervi facialis" EXACT [ZFA:0000206] xref: ABA:VII xref: FMA:54582 xref: NIF_GrossAnatomy:birnlex_903 xref: ZFA:0000206 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png is_a: UBERON:0000127 ! facial nucleus relationship: part_of UBERON:0001896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0007632 [Term] id: UBERON:0003012 name: flocculonodular lobe namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_904-FMA_72253 def: "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]." [Wikipedia:Flocculonodular_lobe] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cerebellum flocculonodular lobe" EXACT [MA:0002965] synonym: "flocculonodular lobe" EXACT [FMA:72253] synonym: "flocculonodular lobe of cerebellum" EXACT [FMA:72253] synonym: "lobus flocculonodularis" EXACT [FMA:72253, FMA:TA] synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253] xref: EV:0100297 xref: FMA:72253 xref: MA:0002965 xref: NIF_GrossAnatomy:birnlex_904 xref: SCTID:279361008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png is_a: UBERON:0005293 ! cerebellum lobe [Term] id: UBERON:0003013 name: alar central lobule namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_907-FMA_72517 def: "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]." [Wikipedia:Alar_central_lobule] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "alae of central lobule" EXACT [FMA:72517] synonym: "lobules II, III of vermis" EXACT [FMA:72517] xref: FMA:72517 xref: NIF_GrossAnatomy:birnlex_907 is_a: UBERON:0004003 ! cerebellum hemisphere lobule [Term] id: UBERON:0003015 name: anterior quadrangular lobule namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_913-FMA_72516 synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516] synonym: "anterior semilunar lobule" EXACT [FMA:72516] synonym: "lobulus quadrangularis anterior cerebelli [h iv et v]" EXACT [FMA:72516, FMA:TA] synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516] xref: FMA:72516 xref: NIF_GrossAnatomy:birnlex_913 xref: SCTID:369041006 is_a: UBERON:0004003 ! cerebellum hemisphere lobule is_a: UBERON:0004004 ! cerebellum lobule [Term] id: UBERON:0003016 name: postcommissural fornix namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_914-FMA_62062 xref: FMA:62062 xref: NIF_GrossAnatomy:birnlex_914 is_a: UBERON:0000052 ! fornix of brain is_a: UBERON:0003048 ! regional part of hypothalamus is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0003017 name: substantia innominata namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_915-FMA_61885 def: "The substantia innominata (literally 'unnamed substance') of Meynert is a stratum consisting partly of gray and partly of white substance, which lies below the anterior part of the thalamus and lentiform nucleus. The gross anatomical structure is called anterior perforated substance because to the naked eye looks perforated by many holes. Holes are due to many blood vessels that pass through this area. It is part of the basal forebrain. [WP,unvetted]." [Wikipedia:Substantia_innominata] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "innominate substance" EXACT [FMA:61885] synonym: "nucleus of substantia innominata" EXACT [FMA:61885] synonym: "substantia innominata of Reichert" RELATED [BTO:0002447] synonym: "substantia innominata of Reil" RELATED [BTO:0002447] xref: ABA:SI xref: BM:Tel-SI xref: BTO:0002447 xref: FMA:61885 xref: GAID:638 xref: MESH:A.08.186.211.577.820 xref: NIF_GrossAnatomy:birnlex_915 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Substantia_innominata_MRI.PNG/200px-Substantia_innominata_MRI.PNG is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0002743 ! basal forebrain relationship: part_of UBERON:0002778 ! ventral pallidum disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon property_value: "spatially_disjoint_from" UBERON:0007627 [Term] id: UBERON:0003018 name: parvicellular part of ventral posteromedial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_917-FMA_62207 synonym: "gustatory nucleus (thalamus)" EXACT [NIF_GrossAnatomy:birnlex_917] synonym: "gustatory thalamic nucleus" EXACT [FMA:62207] synonym: "nucleus ventralis posterior medialis thalami, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_917] synonym: "pars parvicellularis nuclei ventralis posteromedialis thalami" EXACT [FMA:62207, FMA:TA] synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207] synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207] synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207] synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207] synonym: "ventroposteromedial nucleus of the thalamus, parvicellular part" EXACT [NIF_GrossAnatomy:birnlex_917] xref: ABA:VPMpc xref: FMA:62207 xref: NIF_GrossAnatomy:birnlex_917 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003019 name: oral part of ventral posterolateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_918-FMA_62205 synonym: "nucleus lateralis intermedius lateralis" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus posteroventralis oralis" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis intermedius (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis intermedius (walker)" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis intermedius thalami" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis posterior lateralis, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventrointermedius" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205] synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205] xref: FMA:62205 xref: NIF_GrossAnatomy:birnlex_918 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003020 name: subcallosal area namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_919-FMA_61890 def: "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]." [Wikipedia:Subcallosal_area] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "adolfactory area" EXACT [FMA:61890] synonym: "area paraolfactoria" EXACT [FMA:61890, FMA:TA] synonym: "paraolfactory area" EXACT [FMA:61890] synonym: "parolfactory area" EXACT [FMA:61890] xref: FMA:61890 xref: NIF_GrossAnatomy:birnlex_919 xref: SCTID:362357004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png is_a: UBERON:0002020 ! gray matter of neuraxis disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon [Term] id: UBERON:0003021 name: central lobule namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_920-FMA_72519 def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]." [Wikipedia:Central_lobule] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "central lobule of cerebellum" EXACT [FMA:72519] synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519] synonym: "lobulus centralis cerebelli [ii et iii]" EXACT [FMA:72519, FMA:TA] xref: ABA:CENT xref: FMA:72519 xref: NIF_GrossAnatomy:birnlex_920 xref: SCTID:279383007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e4/Gray703.png/200px-Gray703.png is_a: UBERON:0004003 ! cerebellum hemisphere lobule property_value: "spatially_disjoint_from" UBERON:0004077 [Term] id: UBERON:0003022 name: lobe parts of cerebral cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_922-FMA_68603 comment: check w.r.t regional part of cerebreal cortex synonym: "cerebral cortical segment" RELATED [FMA:68603] synonym: "regional organ part of cerebral cortex" RELATED [FMA:68603] synonym: "segment of cerebral cortex" RELATED [NIF_GrossAnatomy:birnlex_922] xref: FMA:68603 xref: NIF_GrossAnatomy:birnlex_922 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0003023 name: pontine tegmentum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_923-FMA_71108 def: "The pontine tegmentum is a part of the pons of the brain involved in the initiation of REM sleep. It includes the pedunculopontine nucleus and the laterodorsal tegmental nucleus, among others, and is located near the raphe nucleus and the locus ceruleus. The trapezoid body is part of the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_tegmentum] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "dorsal portion of pons" EXACT [FMA:71108] synonym: "tegmental portion of pons" EXACT [FMA:71108] synonym: "tegmentum of pons" EXACT [FMA:71108] synonym: "tegmentum pontis" EXACT [FMA:71108, FMA:TA] xref: FMA:71108 xref: NIF_GrossAnatomy:birnlex_923 xref: SCTID:362401009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Brainstem_Abducens.png/200px-Brainstem_Abducens.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0003024 name: principal part of ventral posteromedial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_927-FMA_62208 synonym: "nucleus ventralis posteromedialis, pars prinicipalis" EXACT [NIF_GrossAnatomy:birnlex_927] xref: FMA:62208 xref: NIF_GrossAnatomy:birnlex_927 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003025 name: brachium of inferior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_929-FMA_71114 def: "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]." [Wikipedia:Brachium_of_inferior_colliculus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "brachium of medial geniculate" EXACT [FMA:71114] synonym: "inferior brachium" EXACT [FMA:71114] synonym: "inferior collicular brachium" EXACT [FMA:71114] synonym: "inferior colliculus brachium" EXACT [FMA:71114] synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114] synonym: "peduncle of inferior colliculus" EXACT [FMA:71114] xref: BM:MB-BSC xref: FMA:71114 xref: NIF_GrossAnatomy:birnlex_929 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG is_a: UBERON:0002316 ! white matter is_a: UBERON:0002917 ! regional part of inferior colliculus is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0003026 name: limitans nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_931-FMA_62220 synonym: "limitans thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_931] synonym: "nucleus limitans" EXACT [NIF_GrossAnatomy:birnlex_931] synonym: "nucleus limitans opticus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_931] synonym: "nucleus limitans thalami" EXACT [NIF_GrossAnatomy:birnlex_931] xref: BM:Die-Th-L xref: FMA:62220 xref: NIF_GrossAnatomy:birnlex_931 xref: SCTID:369181002 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003027 name: cingulate cortex namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_934-MA_0000904 def: "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]." [Wikipedia:Cingulate_cortex] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: BM:Tel-Cx-Cg xref: BTO:0003975 xref: EFO:0000343 xref: MA:0000904 xref: NIF_GrossAnatomy:birnlex_934 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png xref: ncithesaurus:Cingulate_Cortex is_a: UBERON:0002619 ! regional part of cerebral cortex is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0003028 name: commissure of inferior colliculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_935-FMA_71115 def: "A commissure that is part of a inferior colliculus [Obol]." [OBOL:automatic] synonym: "caudal colliculus commissure" EXACT [OBOL:automatic] synonym: "commissure of caudal colliculus" EXACT [OBOL:automatic] synonym: "commissure of inferior colliculi" EXACT [FMA:71115] synonym: "commissure of posterior colliculus" EXACT [OBOL:automatic] synonym: "commissure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "inferior collicular commissure" EXACT [FMA:71115] synonym: "inferior colliculus commissure" EXACT [FMA:71115] synonym: "posterior colliculus commissure" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] xref: FMA:71115 xref: NIF_GrossAnatomy:birnlex_935 xref: SCTID:369260005 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002917 ! regional part of inferior colliculus is_a: UBERON:0005970 ! brain commissure relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0003029 name: stria terminalis namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_937-FMA_61974 def: "The stria terminalis (terminal stria) is a structure in the brain consisting of a band of fibers running along the lateral margin of the ventricular surface of the thalamus. Serving as a major output pathway of the amygdala, the stria terminalis runs from its corticomedial division to the ventral medial nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Stria_terminalis] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "semicircular stria" EXACT [FMA:61974] synonym: "terminal stria" EXACT [Wikipedia:Terminal_stria] xref: BM:ST xref: BM:STr xref: BTO:0004616 xref: FMA:61974 xref: NIF_GrossAnatomy:birnlex_937 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray683.png/200px-Gray683.png is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0003030 name: posterior nucleus of thalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_939-FMA_62221 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "nucleus posterior thalami" EXACT [NIF_GrossAnatomy:birnlex_939] xref: BM:Die-Th-Po xref: FMA:62221 xref: NIF_GrossAnatomy:birnlex_939 xref: SCTID:424901000 xref: ZFA:0000325 xref: ncithesaurus:Posterior_Nucleus_of_the_Thalamus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0006569 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! diencephalic nucleus [Term] id: UBERON:0003031 name: submedial nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_946-FMA_62223 synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223] synonym: "nucleus submedialis thalami" EXACT [FMA:62223, FMA:TA] synonym: "nucleus submedius thalami" EXACT [NIF_GrossAnatomy:birnlex_946] synonym: "submedial nucleus of thalamus" EXACT [FMA:62223] synonym: "submedial nucleus thalamus" EXACT [NIF_GrossAnatomy:birnlex_946] synonym: "submedial thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_946] xref: ABA:SMT xref: EV:0100203 xref: FMA:62223 xref: NIF_GrossAnatomy:birnlex_946 xref: SCTID:279151007 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0002739 [Term] id: UBERON:0003033 name: suprageniculate nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_953-FMA_62222 synonym: "nucleus suprageniculatus" EXACT [NIF_GrossAnatomy:birnlex_953] synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222] xref: ABA:SGN xref: BM:Die-Th-SG xref: FMA:62222 xref: NIF_GrossAnatomy:birnlex_953 xref: SCTID:369180001 is_a: UBERON:0002308 ! nucleus of brain property_value: "spatially_disjoint_from" UBERON:0002709 property_value: "spatially_disjoint_from" UBERON:0002983 [Term] id: UBERON:0003034 name: central dorsal nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_956-FMA_62169 synonym: "nucleus centralis dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_956] synonym: "nucleus centralis superior lateralis" EXACT [NIF_GrossAnatomy:birnlex_956] synonym: "nucleus centralis superior lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_956] synonym: "nucleus circularis" EXACT [NIF_GrossAnatomy:birnlex_956] xref: ABA:NC xref: FMA:62169 xref: NIF_GrossAnatomy:birnlex_956 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0003035 name: regional part of cerebellar white matter namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_959-FMA_72547 synonym: "segment of cerebellar white matter" EXACT [NIF_GrossAnatomy:birnlex_959] xref: FMA:72547 xref: NIF_GrossAnatomy:birnlex_959 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003036 name: central lateral nucleus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_961-FMA_62170 synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170] synonym: "central lateral thalamic nucleus" EXACT [FMA:62170] synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170] synonym: "nucleus centralis lateralis of thalamus" EXACT [NIF_GrossAnatomy:birnlex_961] synonym: "nucleus centralis lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_961] xref: ABA:CL xref: BM:Die-CL xref: EV:0100205 xref: FMA:62170 xref: NIF_GrossAnatomy:birnlex_961 xref: SCTID:279153005 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter property_value: "spatially_disjoint_from" UBERON:0001922 property_value: "spatially_disjoint_from" UBERON:0001923 property_value: "spatially_disjoint_from" UBERON:0001924 property_value: "spatially_disjoint_from" UBERON:0002955 [Term] id: UBERON:0003037 name: septum namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_963-FMA_86461 def: "a wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum] comment: general anatomical term in FMA synonym: "septa" EXACT PLURAL [] xref: BM:Tel-Spt xref: FMA:86461 xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0003038 name: thoracic spinal cord namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_966-FMA_71167 def: "The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]." [Wikipedia:Thoracic_spinal_cord] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "segmenta thoracica medullae spinalis [1-12]" EXACT [FMA:71167, FMA:TA] synonym: "thoracic region of spinal cord" EXACT [FMA:71167] synonym: "thoracic segment of spinal cord" EXACT [FMA:71167] synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167] synonym: "thoracic spinal cord" EXACT [FMA:71167] xref: FMA:71167 xref: NIF_GrossAnatomy:birnlex_966 xref: SCTID:278750009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray820.png/200px-Gray820.png xref: ncithesaurus:Thoracic_Spinal_Cord is_a: UBERON:0005844 ! spinal cord segment [Term] id: UBERON:0003039 name: anterior commissure anterior part namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_969-FMA_61963 def: "the horseshoe-shaped tract that connects the two olfactory bulbs." [MP:0010859] synonym: "anterior commissure pars anterior" EXACT [MP:0010859] synonym: "anterior commissure, anterior part" EXACT [FMA:61963] synonym: "anterior part of anterior commissure" EXACT [FMA:61963, MP:0008230] synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963] synonym: "olfactory part of anterior commissure" EXACT [FMA:61963] synonym: "pars anterior" BROAD [MP:0008230] synonym: "pars anterior commissurae anterioris" EXACT [MP:0008230] xref: FMA:61963 xref: NIF_GrossAnatomy:birnlex_969 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0000935 ! anterior commissure disjoint_from: UBERON:0006964 ! pars distalis of adenohypophysis [Term] id: UBERON:0003040 name: central gray substance of midbrain namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_973-FMA_74510 def: "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]." [Wikipedia:Periaqueductal_gray, https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376] comment: TODO - resolve MA - see tracker subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510] synonym: "central (periaqueductal) gray" EXACT [FMA:74510] synonym: "griseum centrale" EXACT [NIF_GrossAnatomy:birnlex_973] synonym: "periaquectuctal grey" EXACT DUBIOUS [MA:0002895, https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376] synonym: "periaqueductal gray" EXACT [FMA:74510] synonym: "periaqueductal gray matter" EXACT [FMA:74510] synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510] synonym: "periaqueductal grey matter" EXACT [EV:0100249] synonym: "periaqueductal grey substance" EXACT [FMA:74510] synonym: "substantia grisea centralis" EXACT [NIF_GrossAnatomy:birnlex_973] xref: ABA:PAG xref: BM:MB-PAG xref: BTO:0002701 xref: EFO:0002470 xref: EV:0100249 xref: FMA:74510 xref: GAID:585 xref: MA:0000209 xref: MA:0002895 xref: MESH:A.08.186.211.132.659.822.595 xref: NIF_GrossAnatomy:birnlex_973 xref: SCTID:369233003 xref: ZFA:0000518 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0009662 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! hindbrain nucleus relationship: part_of UBERON:0001891 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! midbrain relationship: part_of UBERON:0001896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! medulla oblongata property_value: "spatially_disjoint_from" UBERON:0001715 property_value: "spatially_disjoint_from" UBERON:0001944 property_value: "spatially_disjoint_from" UBERON:0001947 property_value: "spatially_disjoint_from" UBERON:0001966 property_value: "spatially_disjoint_from" UBERON:0002141 property_value: "spatially_disjoint_from" UBERON:0002438 property_value: "spatially_disjoint_from" UBERON:0002691 property_value: "spatially_disjoint_from" UBERON:0002696 property_value: "spatially_disjoint_from" UBERON:0002722 property_value: "spatially_disjoint_from" UBERON:0002995 [Term] id: UBERON:0003041 name: trigeminal nerve fibers namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_974-FMA_72501 synonym: "central part of trigeminal nerve" EXACT [FMA:72501] synonym: "trigeminal nerve fibers" EXACT [FMA:72501] synonym: "trigeminal nerve tract" EXACT [FMA:72501] xref: FMA:72501 xref: NIF_GrossAnatomy:birnlex_974 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003043 name: posterior part of anterior commissure namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_977-FMA_61964 def: "the major forebrain commissure that connects the two temporal lobes of the cortex." [MP:0010860] synonym: "anterior commissure pars posterior" EXACT [MP:0010860] synonym: "anterior commissure temporal limb" EXACT [MP:0008230] synonym: "anterior commissure, posterior part" EXACT [FMA:61964] synonym: "pars posterior" BROAD [MP:0008229] synonym: "temporal limb of anterior commissure" EXACT [FMA:61964] xref: FMA:61964 xref: NIF_GrossAnatomy:birnlex_977 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003544 ! brain white matter relationship: part_of UBERON:0000935 ! anterior commissure disjoint_from: UBERON:0003217 ! neural lobe of neurohypophysis [Term] id: UBERON:0003044 name: uncinate fasciculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_983-FMA_77636 def: "The uncinate fasciculus is a white matter tract in the human brain that connects parts of the limbic system such as the hippocampus and amygdala in the temporal lobe with frontal ones such as the orbitofrontal cortex. Its function is unknown though it is affected in several psychiatric conditions. It is the last white matter tract to mature in the human brain. [WP,unvetted]." [Wikipedia:Uncinate_fasciculus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636] xref: FMA:77636 xref: NIF_GrossAnatomy:birnlex_983 xref: SCTID:369083001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Gray751.png/200px-Gray751.png is_a: UBERON:0001019 ! fascicle [Term] id: UBERON:0003045 name: dorsal longitudinal fasciculus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_986-FMA_83845 def: "The dorsal longitudinal fasciculus (DLF) (not to be confused with the medial longitudinal fasciculus) is a white matter fiber tract located within the brain stem, specifically in the dorsal brainstem tegmentum. The DLF travels through the periaqueductal gray matter. The tract is comprised of a diffuse brainstem pathway located in the periventricular gray matter comprising ascending visceral sensory axons and descending hypothalamic axons. As with all white matter tracts, the DLF consists of myelinated axons carrying information between neurons. The DLF, carries both ascending and descending fibers, conveys visceral motor and sensory signals. [WP,unvetted]." [Wikipedia:Dorsal_longitudinal_fasciculus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "DLF" RELATED [ZFA:0005266] synonym: "bundle of Schutz" EXACT [FMA:83845] synonym: "fasciculus longitudinalis posterior" EXACT [FMA:83845, FMA:TA] synonym: "fasciculus of Schutz" EXACT [FMA:83845] synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845] xref: FMA:83845 xref: NIF_GrossAnatomy:birnlex_986 xref: SCTID:369082006 xref: ZFA:0005266 is_a: UBERON:0001019 ! fascicle is_a: UBERON:0005838 ! fasciculus of brain is_a: UBERON:0002316 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! white matter [Term] id: UBERON:0003046 name: ventral acoustic stria namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_991-FMA_72498 synonym: "anterior acoustic stria" EXACT [FMA:72498] synonym: "stria cochlearis anterior" EXACT [FMA:72498, FMA:TA] xref: FMA:72498 xref: NIF_GrossAnatomy:birnlex_991 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0003047 name: regional part of pretectal region namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_993-FMA_74519 def: "A regional part of brain that is part of a pretectal region [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of pretectal area" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of pretectal region" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of pretectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectal area" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectal region" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectal area" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectal nuclei" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectal region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectum" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectal area" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectal nuclei" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectal region" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectum" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectal area" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectal nuclei" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectal region" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectum" EXACT [OBOL:automatic] synonym: "pretectal area anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectal area biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectal area brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectal area brain biological structure" EXACT [OBOL:automatic] synonym: "pretectal area neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectal area regional part of brain" EXACT [OBOL:automatic] synonym: "pretectal area segment of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectal nuclei brain biological structure" EXACT [OBOL:automatic] synonym: "pretectal nuclei neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectal nuclei regional part of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei segment of brain" EXACT [OBOL:automatic] synonym: "pretectal region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectal region biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectal region brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectal region brain biological structure" EXACT [OBOL:automatic] synonym: "pretectal region neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectal region regional part of brain" EXACT [OBOL:automatic] synonym: "pretectal region segment" EXACT [FMA:74519] synonym: "pretectal region segment of brain" EXACT [OBOL:automatic] synonym: "pretectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectum biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectum brain biological structure" EXACT [OBOL:automatic] synonym: "pretectum neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectum regional part of brain" EXACT [OBOL:automatic] synonym: "pretectum segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectal area" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectal region" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectum" EXACT [OBOL:automatic] synonym: "segment of brain of pretectal area" EXACT [OBOL:automatic] synonym: "segment of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "segment of brain of pretectal region" EXACT [OBOL:automatic] synonym: "segment of brain of pretectum" EXACT [OBOL:automatic] synonym: "segment of pretectal region" EXACT [NIF_GrossAnatomy:birnlex_993] xref: FMA:74519 xref: NIF_GrossAnatomy:birnlex_993 is_a: UBERON:0002966 ! regional part of midbrain tectum [Term] id: UBERON:0003048 name: regional part of hypothalamus namespace: uberon alt_id: UBERON:NIF_GrossAnatomy_birnlex_995-FMA_67706 def: "A regional part of brain that is part of a hypothalamus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "biological structure of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "biological structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of hypothalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "brain anatomical structure of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "brain biological structure of hypothalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "brain biological structure of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "hypothalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "hypothalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "hypothalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "hypothalamus brain biological structure" EXACT [OBOL:automatic] synonym: "hypothalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "hypothalamus regional part of brain" EXACT [OBOL:automatic] synonym: "hypothalamus segment" EXACT [FMA:67706] synonym: "hypothalamus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of hypothalamus" EXACT [OBOL:automatic] synonym: "neuraxis segment of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "neuraxis segment of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area biological structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area brain anatomical structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area brain biological structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area neuraxis segment" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area regional part of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area segment of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region biological structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region brain anatomical structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region brain biological structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region neuraxis segment" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region regional part of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "regional part of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "segment of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "segment of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_995] xref: FMA:67706 xref: NIF_GrossAnatomy:birnlex_995 xref: SCTID:360454003 is_a: UBERON:0002784 ! regional part of diencephalon [Term] id: UBERON:0003049 name: collagen and cuticulin-based cuticle namespace: uberon alt_id: UBERON:WBbt_0005755 def: "A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan[WBbt]. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as cuticlins, together with glycoproteins and lipids[WP]." [UBERON:cjm, WA:dh] comment: Note that GO has a superclass protein-based cuticle development // taxonomic restriction may be too strict subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "nematode cuticle" RELATED [] xref: WBbt:0005755 is_a: UBERON:0001002 ! cuticle [Term] id: UBERON:0003050 name: olfactory placode namespace: uberon alt_id: UBERON:XAO_0000005-ZFA_0000048 def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [Wikipedia:Olfactory_placode, XAO:0000005] comment: Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "nasal placode" RELATED [] synonym: "olfactory placodes" EXACT PLURAL [] xref: AAO:0011076 xref: EFO:0003420 xref: EHDAA2:0001232 xref: EHDAA:1504 xref: EMAPA:16543 xref: TAO:0000048 xref: VHOG:0000186 xref: XAO:0000005 xref: ZFA:0000048 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005085 ! ectodermal placode is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007497 ! developing epithelial placode is_a: UBERON:0009955 ! neurogenic placode relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0000922 ! embryo relationship: develops_from UBERON:0002025 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! stratum basale of epidermis relationship: develops_from UBERON:0005497 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! non-neural ectoderm relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! olfactory system relationship: part_of UBERON:0005725 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! olfactory system [Term] id: UBERON:0003051 name: ear vesicle namespace: uberon alt_id: UBERON:0004373 alt_id: UBERON:XAO_0000006-ZFA_0000051 def: "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Auditory_vesicle, ZFIN:curator] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "OV" RELATED [] synonym: "auditory vesicle" RELATED [BTO:0002661] synonym: "otic vesicle" EXACT [] synonym: "otocyst" RELATED [] xref: AAO:0011080 xref: BTO:0002661 xref: EHDAA2:0001342 xref: EMAPA:16669 xref: SCTID:308792006 xref: VHOG:0001148 xref: XAO:0000006 xref: ZFA:0000051 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png xref: ncithesaurus:Otic_Vesicle is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005085 ! ectodermal placode is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007497 ! developing epithelial placode relationship: part_of UBERON:0000922 ! embryo relationship: develops_from UBERON:0003069 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! otic placode relationship: develops_from UBERON:0003069 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! otic placode relationship: part_of UBERON:0002105 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! vestibulo-auditory system [Term] id: UBERON:0003052 name: midbrain-hindbrain boundary namespace: uberon alt_id: UBERON:XAO_0000016-ZFA_0000042 def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555] comment: editor note: consider adding class for organizer. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "MHB" EXACT [] synonym: "isthmus" RELATED [] synonym: "isthmus/MHB" RELATED [Geisha:syn] synonym: "midbrain hindbrain boundary" EXACT [] xref: AAO:0011064 xref: EHDAA2:0000757 xref: EHDAA:5789 xref: TAO:0000042 xref: VHOG:0000649 xref: XAO:0000016 xref: ZFA:0000042 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003053 name: ventricular zone namespace: uberon alt_id: UBERON:XAO_0000021-ZFA_0001083 def: "There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons." [BTO:0003654] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "VZ" EXACT [] synonym: "brain ventricular zone" EXACT [MA:0000819] synonym: "ventricular zone of brain" EXACT [] xref: AAO:0011112 xref: BTO:0003654 xref: EFO:0003624 xref: MA:0000819 xref: TAO:0001083 xref: VHOG:0001224 xref: XAO:0000021 xref: ZFA:0001083 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001890 ! forebrain relationship: part_of UBERON:0005281 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! ventricular system of central nervous system [Term] id: UBERON:0003054 name: roof plate namespace: uberon alt_id: UBERON:XAO_0000022-ZFA_0007058 def: " a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "alar plate" RELATED [Wikipedia:Roof_plate] synonym: "roofplate" EXACT [] xref: AAO:0011097 xref: ZFA:0007058 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003055 name: periderm namespace: uberon alt_id: UBERON:XAO_0000029-ZFA_0001185 def: "A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis." [ISBN:9780878932504] comment: Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html) subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "EVL" RELATED [ZFA:0001185] synonym: "epidermis epithelial layer" RELATED [] synonym: "epidermis outer layer" RELATED [] synonym: "periderm" RELATED [] xref: EHDAA2:0001846 xref: EHDAA:6538 xref: VHOG:0001680 xref: XAO:0000029 xref: ZFA:0001185 xref: ncithesaurus:Periderm is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001003 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! epidermis [Term] id: UBERON:0003056 name: pre-chordal neural plate namespace: uberon alt_id: UBERON:XAO_0000045-ZFA_0007016 def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator] comment: This class was created automatically from a combination of ontologies synonym: "anterior neural plate" RELATED [] xref: AAO:0011084 xref: VHOG:0001200 xref: XAO:0000045 xref: ZFA:0007016 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003057 name: chordal neural plate namespace: uberon alt_id: UBERON:XAO_0000046-ZFA_0007017 def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator] comment: This class was created automatically from a combination of ontologies synonym: "posterior neural plate" RELATED [] xref: VHOG:0001201 xref: XAO:0000046 xref: ZFA:0007017 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003058 name: hypochord namespace: uberon alt_id: UBERON:XAO_0000056-ZFA_0000031 def: "The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO]" [AAO:0000733, GO:0055016, ISBN:0815318960, PMID:10648245] comment: Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA] subset: dubious_grouping ! Indicates that subclasses in AOs may be inappropriately linked synonym: "subnotochordal rod" EXACT [GO:0055016, PMID:10648245] xref: AAO:0000733 xref: EFO:0003475 xref: TAO:0000031 xref: VHOG:0000081 xref: XAO:0000056 xref: ZFA:0000031 is_a: UBERON:0000479 ! tissue is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000925 ! endoderm relationship: develops_from UBERON:0006599 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive hypochord [Term] id: UBERON:0003059 name: presomitic mesoderm namespace: uberon alt_id: UBERON:XAO_0000057-ZFA_0000279 def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator] synonym: "PSM" RELATED [] synonym: "segmental plate" EXACT [] synonym: "somitogenic mesoderm" RELATED [] synonym: "unsegmented paraxial mesoderm" EXACT [UBERON:cjm] xref: AAO:0011086 xref: EFO:0001982 xref: TAO:0000279 xref: VHOG:0000559 xref: XAO:0000057 xref: ZFA:0000279 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003077 ! paraxial mesoderm [Term] id: UBERON:0003060 name: pronephric duct namespace: uberon alt_id: UBERON:XAO_0000063-ZFA_0000150 def: "In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "archinephric duct" RELATED [VHOG:0000082] xref: AAO:0011088 xref: SCTID:361406002 xref: TAO:0000150 xref: VHOG:0000082 xref: XAO:0000063 xref: ZFA:0000150 xref: ncithesaurus:Pronephric_Duct is_a: UBERON:0009201 ! nephric duct relationship: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0003061 name: blood island namespace: uberon alt_id: UBERON:XAO_0000067-ZFA_0000094 def: "Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP]. Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates[XAO]. Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension[ZFA]." [PMID:9618755, Wikipedia:Blood_island, XAO:0000067, ZFIN:curator] comment: Note EHDAA2 distinguishes 3 types - we opt for the mesoderm one subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "VBI" RELATED [] synonym: "blood island of umbilical vesicle" EXACT [Wikipedia:Blood_island] synonym: "blood islands" EXACT PLURAL [] synonym: "caudal hematopoietic tissue" RELATED [] synonym: "insula sanguinea vesiculae umbilicalis" EXACT [Wikipedia:Blood_island] synonym: "mesoderm blood islands" EXACT [EHDAA2:0003241] synonym: "posterior ICM" RELATED [] synonym: "posterior blood island" RELATED [] synonym: "ventral blood island" RELATED [] synonym: "ventral lateral plate mesoderm" BROAD [] xref: AAO:0011006 xref: EFO:0003489 xref: EHDAA2:0003241 xref: TAO:0000094 xref: TE:E5.11.2.0.0.0.4 xref: VHOG:0000085 xref: XAO:0000067 xref: ZFA:0000094 xref: ncithesaurus:Blood_Island is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002390 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! hematopoietic system [Term] id: UBERON:0003062 name: primitive knot namespace: uberon alt_id: UBERON:0004018 alt_id: UBERON:XAO_0000072-ZFA_0000071 def: "organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]." [MP:0004066, Wikipedia:Primitive_knot, Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer] comment: TODO check XAO subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "DMZ" RELATED [VHOG:0000598] synonym: "Hensen node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot] synonym: "Hensen's node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot] synonym: "Spemann Mangold organizer" EXACT SENSU [ZFA:0000071] synonym: "Spemann's organizer" EXACT SENSU [ZFA:0000071] synonym: "dorsal marginal zone" RELATED [XAO:0000072] synonym: "embryo organizer" EXACT [GAID:1312] synonym: "embryonic organizer" EXACT [GAID:1312] synonym: "embryonic shield" EXACT [http://zfin.org/zf_info/zfbook/stages/gast.html] synonym: "node" BROAD [EMAPA:16075] synonym: "organizer" EXACT [ZFA:0000071] synonym: "primitive node" EXACT [Wikipedia:Primitive_knot] synonym: "shield" EXACT [ZFA:0000071] xref: AAO:0000346 xref: BILA:0000053 xref: BTO:0003395 xref: EHDAA2:0001272 xref: EHDAA:549 xref: EMAPA:16075 xref: GAID:1312 xref: MESH:A.16.254.650 xref: SCTID:361464001 xref: TAO:0000071 xref: VHOG:0000598 xref: XAO:0000072 xref: ZFA:0000071 xref: ncithesaurus:Primitive_Node is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0010188 ! protuberance is_a: UBERON:0004879 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! marginal zone of embryo relationship: part_of UBERON:0002541 ! germ ring relationship: part_of UBERON:0004341 ! primitive streak [Term] id: UBERON:0003063 name: prechordal plate namespace: uberon alt_id: UBERON:XAO_0000079-ZFA_0000060 def: "a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells[GO]. Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region[ZFA]. Uniquely thickened portion of the endoderm that is in contact with ectoderm immediately rostral to the cephalic tip of the notochord[WP]." [Wikipedia:Prechordal_plate, ZFIN:curator] comment: todo - check subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "head mesenchyme" BROAD [XAO:0000079] synonym: "head mesoderm" BROAD [XAO:0000079] xref: AAO:0011085 xref: EHDAA2:0001493 xref: EHDAA:181 xref: TAO:0000060 xref: VHOG:0000086 xref: XAO:0000079 xref: ZFA:0000060 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000925 ! endoderm relationship: part_of UBERON:0004341 ! primitive streak [Term] id: UBERON:0003064 name: intermediate mesoderm namespace: uberon alt_id: UBERON:XAO_0000085-ZFA_0001206 def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm] comment: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "IM" RELATED [] synonym: "intermediate plate mesoderm" RELATED [UBERON:cjm] xref: AAO:0010575 xref: EMAPA:16178 xref: SCTID:361476001 xref: TAO:0001206 xref: VHOG:0000087 xref: XAO:0000085 xref: ZFA:0001206 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Intermediate_Mesoderm is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0003065 name: ciliary marginal zone namespace: uberon alt_id: UBERON:XAO_0000086-ZFA_0001289 def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "CMZ" RELATED [] synonym: "circumferential germinal zone" RELATED [] synonym: "peripheral growth zone" EXACT [ZFA:0001289] xref: AAO:0010342 xref: EFO:0003668 xref: TAO:0001289 xref: VHOG:0000088 xref: XAO:0000086 xref: ZFA:0001289 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0003066 name: hyoid arch namespace: uberon alt_id: UBERON:XAO_0000098-ZFA_0001276 def: "assists in forming the side and front of the neck." [Wikipedia:Second_branchial_arch] comment: In XAO, develops from visceral pouch 2 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "2nd arch" RELATED [EHDAA2:0000050] synonym: "2nd pharyngeal arch" EXACT [] synonym: "branchial arch 2" EXACT SENSU [] synonym: "hyoid bars" RELATED [] synonym: "pharyngeal arch 2" EXACT [] synonym: "second branchial arch" EXACT SENSU [] synonym: "second pharyngeal arch" EXACT [] synonym: "second visceral arch" EXACT SENSU [] synonym: "visceral arch 2" EXACT SENSU [] xref: AAO:0010363 xref: EHDAA2:0000050 xref: EHDAA:611 xref: EMAPA:16272 xref: SCTID:308768003 xref: VHOG:0000297 xref: XAO:0000098 xref: ZFA:0001611 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png xref: ncithesaurus:Second_Pharyngeal_Arch is_a: UBERON:0002539 ! pharyngeal arch relationship: develops_from UBERON:0007123 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal pouch 2 [Term] id: UBERON:0003067 name: dorsolateral placode namespace: uberon alt_id: UBERON:XAO_0000187-ZFA_0001310 def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator] synonym: "dorsolateral placodes" EXACT PLURAL [ZFA:0001310] xref: TAO:0001310 xref: VHOG:0000103 xref: XAO:0000187 xref: ZFA:0001310 is_a: UBERON:0009955 ! neurogenic placode relationship: develops_from UBERON:0005497 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! non-neural ectoderm [Term] id: UBERON:0003068 name: axial mesoderm namespace: uberon alt_id: UBERON:XAO_0000205-ZFA_0001204 def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "chordamesoderm" RELATED [Wikipedia:Chordamesoderm] xref: AAO:0011017 xref: EFO:0003647 xref: TAO:0001204 xref: VHOG:0000107 xref: XAO:0000205 xref: ZFA:0001204 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm relationship: develops_from UBERON:0003062 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! primitive knot [Term] id: UBERON:0003069 name: otic placode namespace: uberon alt_id: UBERON:XAO_0000223-ZFA_0000138 def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175] comment: With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "auditory placode" RELATED [] synonym: "ear placode" RELATED [] synonym: "ear/otic placode" RELATED [] xref: AAO:0011079 xref: EFO:0003429 xref: EHDAA2:0001339 xref: EHDAA:506 xref: EMAPA:16195 xref: TAO:0000138 xref: VHOG:0000235 xref: XAO:0000223 xref: ZFA:0000138 xref: ncithesaurus:Otic_Placodes is_a: UBERON:0003067 ! dorsolateral placode is_a: UBERON:0005085 ! ectodermal placode relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0003070 name: trigeminal placode namespace: uberon alt_id: UBERON:XAO_0000225-ZFA_0000162 def: "The ectodermal rudiment of the trigeminal ganglion." [VHOG:0000109] comment: This class was created automatically from a combination of ontologies xref: EFO:0003433 xref: EHDAA2:0004209 xref: TAO:0000162 xref: VHOG:0000109 xref: XAO:0000225 xref: ZFA:0000162 is_a: UBERON:0003067 ! dorsolateral placode [Term] id: UBERON:0003071 name: eye primordium namespace: uberon alt_id: UBERON:0005060 alt_id: UBERON:XAO_0000227-ZFA_0000570 def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] comment: AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium synonym: "eye anlage" RELATED [XAO:0000227] synonym: "eye field" RELATED [] synonym: "eye placode" EXACT [OBOL:automatic] synonym: "occular primordium" EXACT [] synonym: "ocular primordium" EXACT [] synonym: "optic field" RELATED [] synonym: "optic placode" EXACT [GO:0046619] synonym: "optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm] synonym: "optic primordium" EXACT [] xref: AAO:0011038 xref: EFO:0003541 xref: EHDAA2:0004431 xref: TAO:0000570 xref: XAO:0000227 xref: XAO:0004090 xref: ZFA:0000570 is_a: UBERON:0005085 ! ectodermal placode relationship: part_of UBERON:0003056 ! pre-chordal neural plate relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0003072 name: optic cup namespace: uberon alt_id: UBERON:XAO_0000228-ZFA_0001202 def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, ZFA:0001202] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "eye cup" RELATED [] xref: EHDAA2:0001303 xref: EHDAA:2912 xref: EMAPA:16674 xref: SCTID:308789007 xref: VHOG:0000167 xref: ZFA:0001202 xref: ncithesaurus:Optic_Cup is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003073 name: lens placode namespace: uberon alt_id: UBERON:XAO_0000240-ZFA_0000122 def: "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [Wikipedia:Lens_placode, ZFIN:curator] comment: Classical transplantation experiments using amphibian embryos suggested that the optic vesicle is the source of lens-inducing signals sufficient to generate lens tissues in competent ectoderm (reviewed in Grainger et al., 1996). More recent findings suggest a multistep model for lens induction. There is now good evidence that lens specification occurs at the neurula stage, before the optic vesicle contact the surface ectoderm, and that neural crest cell migration in the frontonasal region is required to restrict the position of the lens placode (Bailey et al., 2006)[NBK53175] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0011055 xref: EFO:0003494 xref: EHDAA2:0000982 xref: EHDAA:2908 xref: EMAPA:16672 xref: TAO:0000122 xref: VHOG:0000166 xref: XAO:0000240 xref: ZFA:0000122 xref: ncithesaurus:Lens_Placodes is_a: UBERON:0002546 ! cranial placode relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: UBERON:0003074 name: mesonephric duct namespace: uberon alt_id: UBERON:XAO_0000242-ZFA_0000546 def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator] comment: TODO - mesonephric portion of the nephric duct. Development notes: In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct] synonym: "Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546] synonym: "archinephric duct" RELATED [VHOG:0000082, Wikipedia:Wolffian_duct] synonym: "renal duct" RELATED [] xref: AAO:0000637 xref: EHDAA2:0001243 xref: EHDAA:1590 xref: EMAPA:16577 xref: GAID:1315 xref: MESH:A.16.254.940 xref: SCTID:308800003 xref: TAO:0000546 xref: VHOG:0000082 xref: XAO:0000242 xref: ZFA:0000546 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png xref: ncithesaurus:Mesonephric_Duct is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0009201 ! nephric duct relationship: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0004122 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! genitourinary system [Term] id: UBERON:0003075 name: neural plate namespace: uberon alt_id: UBERON:XAO_0000249-ZFA_0000132 def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]" [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "presumptive central nervous system" RELATED [] xref: AAO:0011072 xref: BTO:0001765 xref: EHDAA:346 xref: EHDAA:902 xref: EMAPA:16095 xref: EMAPA:16527 xref: EMAPA:16756 xref: RETIRED_EHDAA2:0001252 xref: TAO:0000132 xref: VHOG:0000068 xref: XAO:0000249 xref: ZFA:0000132 xref: ncithesaurus:Neural_Plate is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: UBERON:0003076 name: posterior neural tube namespace: uberon alt_id: UBERON:XAO_0000250-ZFA_0007037 comment: This class was created automatically from a combination of ontologies xref: AAO:0011082 xref: TAO:0007037 xref: VHOG:0001383 xref: XAO:0000250 xref: ZFA:0007037 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003077 name: paraxial mesoderm namespace: uberon alt_id: UBERON:XAO_0000259-ZFA_0000255 def: "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm] comment: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "paraxial mesenchyme" RELATED [] synonym: "somitic mesoderm" EXACT [ISBN:9780878932504] xref: AAO:0010568 xref: EFO:0003515 xref: EMAPA:16183 xref: EMAPA:16751 xref: SCTID:361475002 xref: TAO:0000255 xref: VHOG:0000114 xref: XAO:0000259 xref: ZFA:0000255 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Paraxial_Mesoderm is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003078 name: epibranchial placode namespace: uberon alt_id: UBERON:XAO_0000284-ZFA_0001294 def: "Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear/otic placode and dorsally to the posterior pharyngeal pouches/clefts" [ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31] comment: Epibranchial placodes-derived neu- rons innervate internal organs to transmit information such as heart rate, blood pressure, and visceral distension from the periphery to the central nervous system (Baker and Bronner-Fraser, 2001). From rostral to caudal the epibranchial placodes comprise the geniculate, petrosal, and nodose placodes, each associated in sequence with the first, second and third branchial clefts. Each placode contributes sensory neurons to cranial nerves VII (facial nerve), IX (glossopharyngeal nerve), and X (vagal nerve), respectively[NBK53175] synonym: "epibranchial placodes" EXACT PLURAL [ZFA:0001294] xref: AAO:0011036 xref: EFO:0003455 xref: TAO:0001294 xref: VHOG:0000117 xref: XAO:0000284 xref: ZFA:0001294 is_a: UBERON:0009955 ! neurogenic placode relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0000922 ! embryo relationship: develops_from UBERON:0005497 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! non-neural ectoderm [Term] id: UBERON:0003079 name: floor plate namespace: uberon alt_id: UBERON:XAO_0000306-ZFA_0000022 def: " A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bodenplatte" RELATED [BTO:0001720] synonym: "flexural organ" RELATED [] synonym: "floorplate" EXACT [] synonym: "ventral plate" RELATED [BTO:0001720] xref: AAO:0011041 xref: BTO:0001720 xref: EFO:0003473 xref: RETIRED_EHDAA2:0000545 xref: TAO:0000022 xref: ZFA:0000022 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Gray642.png/200px-Gray642.png is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0001017 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! central nervous system [Term] id: UBERON:0003080 name: anterior neural tube namespace: uberon alt_id: UBERON:XAO_0000307-ZFA_0007038 comment: editor note: TODO - add grouping class for the anterior end of the neural tube at all stages xref: AAO:0011012 xref: TAO:0007038 xref: VHOG:0001384 xref: XAO:0000307 xref: ZFA:0007038 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003081 name: lateral plate mesoderm namespace: uberon alt_id: UBERON:XAO_0000311-ZFA_0000121 def: "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral mesoderm" EXACT [GO:0048368] synonym: "lateral plate" RELATED [] xref: AAO:0010574 xref: SCTID:361477005 xref: TAO:0000121 xref: TAO:0001065 xref: VHOG:0000118 xref: XAO:0000311 xref: ZFA:0000121 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Lateral_Mesoderm is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003082 name: myotome namespace: uberon alt_id: UBERON:XAO_0000315-ZFA_0001056 def: "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator] comment: The term \"myotome\" is also used to describe the muscles served by a single nerve root subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "myomeres" RELATED [] synonym: "myotome region" RELATED [] synonym: "myotomes" RELATED [] xref: AAO:0011067 xref: BTO:0000742 xref: EHDAA2:0003431 xref: EHDAA:1721 xref: EHDAA:1727 xref: EHDAA:1733 xref: EHDAA:1739 xref: SCTID:344535001 xref: TAO:0001056 xref: VHOG:0001244 xref: XAO:0000315 xref: ZFA:0001056 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png xref: ncithesaurus:Myotome_Region is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0001630 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle organ relationship: part_of UBERON:0000926 ! mesoderm relationship: part_of UBERON:0004290 ! dermomyotome relationship: part_of UBERON:0001774 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! muscle of trunk [Term] id: UBERON:0003083 name: trunk neural crest namespace: uberon alt_id: UBERON:XAO_0000319-ZFA_0001024 def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "trunk crest" RELATED [] xref: AAO:0010582 xref: EFO:0003605 xref: TAO:0001024 xref: VHOG:0000062 xref: XAO:0000319 xref: ZFA:0001024 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003084 name: heart primordium namespace: uberon alt_id: UBERON:XAO_0000336-ZFA_0000028 def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator] comment: editor note: should probably be fused with heart rudiment. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fused heart primordium" RELATED [] xref: AAO:0011044 xref: BTO:0001887 xref: XAO:0000336 xref: ZFA:0000028 xref: ncithesaurus:Primordium_of_the_Heart is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0004535 ! cardiovascular system relationship: develops_from UBERON:0006603 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive mesoderm [Term] id: UBERON:0003085 name: ventral aorta namespace: uberon alt_id: UBERON:XAO_0000338-ZFA_0000604 def: "The artery in vertebrate embryos that carries blood from the ventricle of the heart to the aortic arches. In adult fish it branches into afferent branchial arteries supplying the gills. In adult tetrapods it is represented by the ascending part of the aorta[BTO]. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]." [BTO:0004674, GO:0035908] comment: Taxon notes (via vHOG): \"When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.\" Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.620. // in Reptiles, splits to form bases of 3 arteries: left aortic arch, right aortic arch and pulmonary trunk. In birds, the right systemic arch becomes predominant, the left never fully develops [Kardong] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010412 xref: BTO:0004674 xref: TAO:0000604 xref: VHOG:0000121 xref: XAO:0000338 xref: ZFA:0000604 is_a: UBERON:0000947 ! aorta relationship: develops_from UBERON:0004141 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! heart tube property_value: "homologous_to" UBERON:0001496 [Term] id: UBERON:0003086 name: caudal artery namespace: uberon alt_id: UBERON:XAO_0000364-ZFA_0000011 def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [Wikipedia:Caudal_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "CA" RELATED [] xref: AAO:0011023 xref: EFO:0003472 xref: TAO:0000011 xref: VHOG:0000123 xref: XAO:0000364 xref: ZFA:0000011 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0005805 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! dorsal aorta relationship: part_of UBERON:0010204 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! tail vasculature [Term] id: UBERON:0003087 name: anterior cardinal vein namespace: uberon alt_id: UBERON:XAO_0000383-ZFA_0000423 def: "the two paired veins draining the cephalic part of the body." [MP:0004784] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "ACV" RELATED [] synonym: "rostral cardinal vein" EXACT [ZFA:0000423] synonym: "rostral cardinal veins" RELATED [] xref: AAO:0011011 xref: BTO:0004387 xref: EHDAA:1312 xref: EMAPA:16355 xref: SCTID:308780006 xref: TAO:0000423 xref: VHOG:0000113 xref: XAO:0000383 xref: ZFA:0000423 xref: ncithesaurus:Anterior_Cardinal_Vein is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0004344 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cardinal vein [Term] id: UBERON:0003088 name: caudal vein namespace: uberon alt_id: UBERON:XAO_0000390-ZFA_0000180 def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "CV" RELATED [] xref: AAO:0011025 xref: EFO:0003616 xref: TAO:0000180 xref: VHOG:0000126 xref: XAO:0000390 xref: ZFA:0000180 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0010204 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! tail vasculature [Term] id: UBERON:0003089 name: sclerotome namespace: uberon alt_id: UBERON:XAO_0000397-ZFA_0001080 def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." [Wikipedia:Sclerotome, XB:curator] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010571 xref: EHDAA2:0003439 xref: TAO:0001080 xref: VHOG:0000680 xref: XAO:0000397 xref: ZFA:0001080 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png xref: ncithesaurus:Sclerotome is_a: UBERON:0000479 ! tissue is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002329 ! somite [Term] id: UBERON:0003090 name: supraorbital lateral line namespace: uberon alt_id: UBERON:XAO_0000442-ZFA_0000443 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "supraorbital line" EXACT [ZFA:0000443] xref: AAO:0011103 xref: TAO:0000443 xref: VHOG:0000128 xref: XAO:0000442 xref: ZFA:0000443 is_a: UBERON:0010202 ! lateral line [Term] id: UBERON:0003091 name: thyroid primordium namespace: uberon alt_id: UBERON:XAO_0000444-ZFA_0001081 def: "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [http://emedicine.medscape.com/article/845125-overview] comment: In all vertebrates the thyroid arises from the ventral aspect of the second pouch[PMID:16313389]. Note that we follow EHDAA2 in dividing this into endoderm and mesenchyme. In this ontology we place the broad developmental relationship at this level, and include specific relationships to the pharyngeal endoderm at the level of the endoderm subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0011106 xref: BTO:0004709 xref: EHDAA2:0002033 xref: EHDAA:952 xref: EMAPA:16361 xref: EMAPA:16558 xref: TAO:0001081 xref: XAO:0000444 xref: ZFA:0001081 xref: ncithesaurus:Thyroid_Primordium is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000949 ! endocrine system relationship: develops_from UBERON:0001731 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cavity of pharynx relationship: develops_from UBERON:0007690 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! early pharyngeal endoderm [Term] id: UBERON:0003092 name: ultimobranchial body namespace: uberon alt_id: UBERON:XAO_0000452-ZFA_0001448 def: "Pharyngeal pouch derivative, usually paired cell masses located in the neck region[Kardong]. The ultimobranchial body or gland is a small organ found in the neck region of many animals. In humans, the ultimobranchial body is an embryological structure that gives rise to the calcitonin-producing cells—also called parafollicular cells or clear cells—of the thyroid gland. In humans, this body is a derivative of the ventral recess of the fourth pharyngeal pouch (or fifth) [WP,unvetted]. The ultimobranchial bodies of lower vertebrates contain large amounts of calcitonin. In mammals the bodies fuse with the thyroid gland and are thought to develop into the parafollicular cells. (Stedman, 25th ed)" [ISBN10:0073040584, MESH:A.13.939, Wikipedia:Ultimobranchial_body] comment: Developmental origins vary across species. PMID:16313389 says: the most posterior pouch generates the ultimobranchial bodies in most vertebrate classes, but mammals do not contain this structure // The neural crest is the source of ultimobranchial cells[Kardong]. WP says pouch 4, but this isn't supported by Kardong (table 13.1 or fig 15.5). EHDAA2 says 6th arch mesenchyme subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "corpus ultimopharyngeum" EXACT [Wikipedia:Ultimobranchial_body] synonym: "postbranchial body" RELATED [Wikipedia:Ultimobranchial_body] synonym: "ultimobranchial" RELATED [Wikipedia:Ultimobranchial_body] synonym: "ultimobranchial bodies" RELATED PLURAL [Wikipedia:Ultimobranchial_body] synonym: "ultimobranchial gland" EXACT [Wikipedia:Ultimobranchial_body] synonym: "ultimopharyngeal body" EXACT [Wikipedia:Ultimobranchial_body] synonym: "ultimopharyngeal gland" EXACT [Wikipedia:Ultimobranchial_body] xref: AAO:0010547 xref: EHDAA2:0002103 xref: EHDAA:2987 xref: EHDAA:9139 xref: GAID:1246 xref: MESH:A.13.939 xref: TAO:0001448 xref: VHOG:0001185 xref: XAO:0000452 xref: ZFA:0001448 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0003093 name: occipital lateral line namespace: uberon alt_id: UBERON:XAO_0000458-ZFA_0000400 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "supratemporal lateral line" RELATED [] xref: AAO:0011075 xref: TAO:0000400 xref: VHOG:0000131 xref: XAO:0000458 xref: ZFA:0000400 is_a: UBERON:0010202 ! lateral line [Term] id: UBERON:0003094 name: infraorbital lateral line namespace: uberon alt_id: UBERON:XAO_0000459-ZFA_0000524 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "infraorbital line" EXACT [ZFA:0000524] xref: AAO:0011053 xref: TAO:0000524 xref: VHOG:0000132 xref: XAO:0000459 xref: ZFA:0000524 is_a: UBERON:0010202 ! lateral line relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003095 name: dorsal lateral line namespace: uberon alt_id: UBERON:XAO_0000462-ZFA_0005112 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0011030 xref: TAO:0005112 xref: XAO:0000462 xref: ZFA:0005112 is_a: UBERON:0010202 ! lateral line [Term] id: UBERON:0003096 name: middle lateral line namespace: uberon alt_id: UBERON:XAO_0000463-ZFA_0000344 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: TAO:0000344 xref: VHOG:0000133 xref: XAO:0000463 xref: ZFA:0000344 is_a: UBERON:0010202 ! lateral line [Term] id: UBERON:0003097 name: dorsal fin namespace: uberon alt_id: UBERON:XAO_0000469-ZFA_0001173 def: "." [Wikipedia:Dorsal_fin] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0010378 xref: BTO:0004650 xref: OpenCyc:Mx4rvVjbzZwpEbGdrcN5Y29ycA xref: TAO:0001173 xref: XAO:0000469 xref: ZFA:0001173 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008897 ! fin [Term] id: UBERON:0003098 name: optic stalk namespace: uberon alt_id: UBERON:XAO_0000475-ZFA_0000137 def: "The optic vesicles project toward the sides of the head, and the peripheral part of each expands to form a hollow bulb, while the proximal part remains narrow and constitutes the optic stalk. [WP,unvetted]." [Wikipedia:Optic_stalk] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0011077 xref: EHDAA2:0001318 xref: EHDAA:3816 xref: EMAPA:16678 xref: SCTID:308788004 xref: TAO:0000137 xref: VHOG:0000223 xref: XAO:0000475 xref: ZFA:0000137 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray864.png/200px-Gray864.png xref: ncithesaurus:Optic_Stalk is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon relationship: develops_from UBERON:0003056 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pre-chordal neural plate relationship: develops_from UBERON:0004128 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! optic vesicle [Term] id: UBERON:0003099 name: cranial neural crest namespace: uberon alt_id: UBERON:XAO_0001001-ZFA_0001194 def: "The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cephalic neural crest" RELATED [EMAPA:16091] synonym: "head crest" RELATED [] synonym: "head neural crest" RELATED [] xref: AAO:0010580 xref: EFO:0003645 xref: EHDAA2:0004420 xref: EMAPA:16091 xref: TAO:0001194 xref: VHOG:0000063 xref: XAO:0001001 xref: ZFA:0001194 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003100 name: female organism namespace: uberon alt_id: UBERON:XAO_0003005-ZFA_0000303 def: "Gonochoristic organism that can produce female gametes." [CARO:0000028] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "female" RELATED [TAO:0000303] synonym: "female human body" NARROW SENSU [FMA:67812] xref: AAO:0010030 xref: BILA:0000028 xref: CARO:0000028 xref: FBbt:00007011 xref: FMA:67812 xref: HAO:0000028 xref: TAO:0000303 xref: TGMA:0001839 xref: XAO:0003005 xref: ZFA:0000303 is_a: UBERON:0000468 ! multi-cellular organism disjoint_from: UBERON:0003101 ! male organism [Term] id: UBERON:0003101 name: male organism namespace: uberon alt_id: UBERON:XAO_0003006-ZFA_0000242 def: "Gonochoristic organism that can produce male gametes." [CARO:0000027] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "male" RELATED [TAO:0000242] synonym: "male human body" NARROW SENSU [FMA:67811] xref: AAO:0010033 xref: BILA:0000027 xref: CARO:0000027 xref: FBbt:00007004 xref: FMA:67811 xref: HAO:0000027 xref: TAO:0000242 xref: TGMA:0001838 xref: WBbt:0007850 xref: XAO:0003006 xref: ZFA:0000242 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0003102 name: surface structure namespace: uberon alt_id: UBERON:XAO_0003028-ZFA_0000292 def: "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [VAO:0000001, Wikipedia:Surface_structure, ZFA:0000292, https://github.com/cmungall/uberon/issues/24] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anatomical surface feature" EXACT [EHDAA2:0003010] xref: AAO:0010337 xref: AEO:0000010 xref: EHDAA2:0003010 xref: TAO:0000292 xref: VAO:0000001 xref: XAO:0003028 xref: ZFA:0000292 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0003103 name: compound organ namespace: uberon alt_id: UBERON:XAO_0003041-ZFA_0000496 def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024] subset: organ_slim ! organs, excluding individual muscles and skeletal elements subset: upper_level ! abstract upper-level terms not directly useful for analysis synonym: "organ" RELATED [] xref: AAO:0010015 xref: AEO:0000024 xref: BILA:0000024 xref: CARO:0000024 xref: EHDAA2:0003024 xref: HAO:0000024 xref: NIF_GrossAnatomy:birnlex_4 xref: TADS:0000598 xref: TAO:0000496 xref: TGMA:0001837 xref: XAO:0003041 xref: ZFA:0000496 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003104 name: mesenchyme namespace: uberon alt_id: UBERON:XAO_0003046-ZFA_0000393 def: "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mesenchymal tissue" EXACT [] synonym: "mesenchyme tissue" EXACT [] synonym: "portion of mesenchymal tissue" EXACT [] synonym: "portion of mesenchyme tissue" EXACT [] xref: AAO:0010427 xref: AEO:0000145 xref: BTO:0001393 xref: EHDAA2:0003145 xref: EV:0100007 xref: TAO:0000393 xref: VHOG:0000170 xref: XAO:0003046 xref: ZFA:0000393 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Mesenchymal_Stem_Cell.jpg/200px-Mesenchymal_Stem_Cell.jpg xref: ncithesaurus:Mesenchyme is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009142 ! entire mesenchyme [Term] id: UBERON:0003105 name: dorsal lateral plate region namespace: uberon alt_id: UBERON:XAO_0003051-ZFA_0005028 def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [PMID:9618755, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "AGM" RELATED [] synonym: "AGM region" RELATED [] synonym: "DA roof" RELATED [ZFA:0005028] synonym: "DA-PCV joint " EXACT [ZFA:0005028] synonym: "DLP" EXACT [] synonym: "DP joint" EXACT [ZFA:0005028] synonym: "aorta gonad mesonephros region" RELATED [] synonym: "aorta-gonads-mesonephros region" RELATED [] synonym: "dorsal aorta - posterior cardinal vein joint" EXACT [ZFA:0005028] synonym: "ventral wall of dorsal aorta" EXACT [] xref: AAO:0011008 xref: EFO:0003699 xref: TAO:0005028 xref: XAO:0003051 xref: ZFA:0005028 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0003081 ! lateral plate mesoderm relationship: part_of UBERON:0005805 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! dorsal aorta [Term] id: UBERON:0003106 name: urostyle namespace: uberon alt_id: UBERON:XAO_0003080-ZFA_0000158 def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "compound centrum" RELATED [] synonym: "last vertebra" RELATED [] synonym: "ultimate vertebra" RELATED [] xref: AAO:0000732 xref: TAO:0000158 xref: XAO:0003080 xref: ZFA:0000158 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0008897 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! fin [Term] id: UBERON:0003107 name: Meckel's cartilage namespace: uberon alt_id: UBERON:XAO_0003085-ZFA_0001205 def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Meckels cartilage" EXACT [] synonym: "ventral mandibular cartilage" EXACT [ZFA:0001205] xref: AAO:0000289 xref: EHDAA2:0001072 xref: EHDAA:7997 xref: EMAPA:17635 xref: EMAPA:17907 xref: MA:0001580 xref: SCTID:308773009 xref: TAO:0001205 xref: VHOG:0000249 xref: XAO:0003085 xref: ZFA:0001205 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0003933 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranial cartilage is_a: UBERON:0007844 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! cartilaginous element relationship: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0003108 name: suspensorium namespace: uberon alt_id: UBERON:XAO_0003086-ZFA_0000444 comment: This class was created automatically from a combination of ontologies synonym: "hyopalatine" RELATED [] synonym: "suspensoria" RELATED [] xref: AAO:0000596 xref: TAO:0000444 xref: XAO:0003086 xref: ZFA:0000444 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003129 ! skull relationship: part_of UBERON:0001704 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! viscerocranium relationship: part_of UBERON:0001704 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! viscerocranium [Term] id: UBERON:0003109 name: parapophysis namespace: uberon alt_id: UBERON:XAO_0003102-ZFA_0001362 def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator] comment: TODO - check subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "lateral process of basiventral" RELATED [] xref: AAO:0000698 xref: AAO:0000708 xref: TAO:0001362 xref: XAO:0003102 xref: ZFA:0001362 is_a: UBERON:0001077 ! transverse process of vertebra relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0002513 ! endochondral bone [Term] id: UBERON:0003110 name: otic region namespace: uberon alt_id: UBERON:ZFA_0000189-XAO_0003175 synonym: "cranial vault" RELATED [ZFA:0000189] xref: AAO:0010208 xref: XAO:0003175 xref: ZFA:0000189 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003111 name: sphenoid region namespace: uberon alt_id: UBERON:ZFA_0000290-XAO_0003174 xref: AAO:0010207 xref: XAO:0003174 xref: ZFA:0000290 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003112 name: olfactory region namespace: uberon alt_id: UBERON:ZFA_0000351-XAO_0003172 def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ." [TAO:0000351] synonym: "ethmoid region" EXACT [ZFA:0000351] xref: AAO:0010206 xref: EFO:0003525 xref: TAO:0000351 xref: XAO:0003172 xref: ZFA:0000351 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003113 name: dermatocranium namespace: uberon alt_id: UBERON:ZFA_0000863-XAO_0003169 def: "Bony parts of the skull derived from ossifications in the dermis of the skin[FD]." [Wikipedia:Skull_roof, http://encyclopedia2.thefreedictionary.com/dermatocranium] synonym: "dermal bone cranium" EXACT [ZFA:0000863] synonym: "roof of skull" EXACT [Wikipedia:Skull_roof] synonym: "roofing bones of the skull" EXACT [Wikipedia:Skull_roof] synonym: "skull roof" EXACT [Wikipedia:Skull_roof] xref: AAO:0010154 xref: XAO:0003169 xref: ZFA:0000863 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003114 name: pharyngeal arch 3 namespace: uberon def: "The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus." [MP:0006339] comment: in XAO, called branchial arch 1 and df VP3 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "3rd arch" RELATED [EHDAA2:0000069] synonym: "3rd pharyngeal arch" EXACT [] synonym: "branchial arch 1" RELATED SENSU [AAO:0010365, ZFA:0001606] synonym: "first branchial arch" RELATED SENSU [ZFA:0001606] synonym: "first gill arch" EXACT SENSU [ZFA:0001606] synonym: "gill arch 1" EXACT SENSU [ZFA:0001606] synonym: "third branchial arch" EXACT SENSU [] synonym: "third pharyngeal arch" EXACT [] synonym: "third visceral arch" EXACT [] synonym: "visceral arch 3" EXACT [] xref: AAO:0010365 xref: EHDAA2:0000069 xref: EHDAA:1080 xref: EMAPA:16399 xref: SCTID:308769006 xref: VHOG:0000298 xref: XAO:0000447 xref: ZFA:0001606 is_a: UBERON:0002539 ! pharyngeal arch is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal arch 3-7 is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal arch 3-7 relationship: develops_from UBERON:0007124 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal pouch 3 [Term] id: UBERON:0003115 name: pharyngeal arch 4 namespace: uberon def: "contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus" [MP:0006340] comment: in XAO, called branchial arch 2 and df VP4 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "4th arch" RELATED [EHDAA2:0000086] synonym: "4th branchial arch" EXACT SENSU [] synonym: "4th pharyngeal arch" EXACT [] synonym: "4th visceral arch" EXACT [] synonym: "branchial arch 2" RELATED SENSU [AAO:0010366, ZFA:0001607] synonym: "fourth branchial arch" EXACT SENSU [] synonym: "fourth pharyngeal arch" EXACT [] synonym: "gill arch 2" EXACT SENSU [ZFA:0001607] synonym: "second branchial arch" RELATED SENSU [ZFA:0001607] synonym: "second gill arch" EXACT SENSU [ZFA:0001607] synonym: "visceral arch 4" EXACT [] xref: AAO:0010366 xref: EHDAA2:0000086 xref: EHDAA:1663 xref: EMAPA:16760 xref: SCTID:308770007 xref: VHOG:0000299 xref: XAO:0000449 xref: ZFA:0001607 is_a: UBERON:0002539 ! pharyngeal arch is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal arch 3-7 is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal arch 3-7 relationship: develops_from UBERON:0007125 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal pouch 4 [Term] id: UBERON:0003116 name: pharyngeal arch 5 namespace: uberon comment: A fifth arch never establishes itself in amniotes synonym: "5th branchial arch" EXACT [UBERON:cjm] synonym: "branchial arch 3" RELATED SENSU [AAO:0010367, XAO:0000451, ZFA:0001608] synonym: "fifth branchial arch" EXACT [SCTID:308771006] synonym: "fifth visceral arch" EXACT [XAO:0000451] synonym: "gill arch 3" EXACT [ZFA:0001608] synonym: "third branchial arch" RELATED SENSU [XAO:0000451] synonym: "visceral arch 5" EXACT [ZFA:0001608] xref: AAO:0010367 xref: SCTID:308771006 xref: VHOG:0001204 xref: XAO:0000451 xref: ZFA:0001608 is_a: UBERON:0002539 ! pharyngeal arch is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal arch 3-7 is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal arch 3-7 relationship: develops_from UBERON:0007126 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal pouch 5 [Term] id: UBERON:0003117 name: pharyngeal arch 6 namespace: uberon alt_id: UBERON:0004349 alt_id: UBERON:ZFA_0001609-XAO_0000453 def: "The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles" [MP:0006347] synonym: "6th arch" EXACT [EHDAA2:0004075] synonym: "6th branchial arch" EXACT [] synonym: "branchial arch 4" RELATED SENSU [AAO:0010368, ZFA:0001609] synonym: "branchial arch 6" EXACT [] synonym: "fourth branchial arch" RELATED SENSU [] synonym: "gill arch 4" EXACT [ZFA:0001609] synonym: "sixth branchial arch" EXACT [] synonym: "sixth visceral arch" RELATED [XAO:0000453] synonym: "visceral arch 6" EXACT [ZFA:0001609] xref: AAO:0010368 xref: EHDAA2:0004075 xref: SCTID:308772004 xref: VHOG:0001205 xref: XAO:0000453 xref: ZFA:0001609 is_a: UBERON:0002539 ! pharyngeal arch is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal arch 3-7 is_a: UBERON:0008896 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal arch 3-7 relationship: develops_from UBERON:0007127 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pharyngeal pouch 6 [Term] id: UBERON:0003118 name: aortic arch 1 namespace: uberon alt_id: UBERON:0004371 alt_id: UBERON:ZFA_0005005-XAO_0000342 def: "the vessels formed within the first pair of branchial arches in embryogenesis" [MP:0006356] comment: ZFA: The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aortas. // Disappears early in development in tetrapods subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "1st arch artery" EXACT [EMAPA:16685] synonym: "AA1" EXACT [ZFA:0005005] synonym: "first aortic arch" EXACT [XAO:0000342] synonym: "first branchial arch artery" EXACT [] synonym: "mandibular aortic arch" EXACT [ZFA:0005005] xref: AAO:0010415 xref: EHDAA2:0000007 xref: EMAPA:16685 xref: SCTID:308774003 xref: TAO:0005004 xref: VHOG:0000149 xref: XAO:0000342 xref: ZFA:0005005 is_a: UBERON:0004363 ! aortic arch [Term] id: UBERON:0003119 name: aortic arch 2 namespace: uberon alt_id: UBERON:0004372 alt_id: UBERON:ZFA_0005006-XAO_0000343 def: "The first and second arches disappear early, but the dorsal end of the second gives origin to the stapedial artery, a vessel which atrophies in humans but persists in some mammals. It passes through the ring of the stapes and divides into supraorbital, infraorbital, and mandibular branches which follow the three divisions of the trigeminal nerve. The infraorbital and mandibular arise from a common stem, the terminal part of which anastomoses with the external carotid. On the obliteration of the stapedial artery this anastomosis enlarges and forms the internal maxillary artery, and the branches of the stapedial artery are now branches of this vessel. The common stem of the infraorbital and mandibular branches passes between the two roots of the auriculotemporal nerve and becomes the middle meningeal artery; the original supraorbital branch of the stapedial is represented by the orbital twigs of the middle meningeal[WP]." [Wikipedia:Aortic_arches#Arches_1_and_2] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "2nd arch artery" EXACT [EHDAA2:0000051] synonym: "AA2" EXACT [ZFA:0005006] synonym: "hyoid aortic arch" EXACT [ZFA:0005006] synonym: "second aortic arch" EXACT [XAO:0000343] synonym: "second branchial arch artery" EXACT [] xref: AAO:0010418 xref: EHDAA2:0000051 xref: EMAPA:16686 xref: SCTID:308775002 xref: VHOG:0000148 xref: XAO:0000343 xref: ZFA:0005006 is_a: UBERON:0004363 ! aortic arch [Term] id: UBERON:0003120 name: aortic arch 3 namespace: uberon alt_id: UBERON:0004352 alt_id: UBERON:ZFA_0005007-XAO_0000344 def: "The third aortic arch constitutes the commencement of the internal carotid artery, and is therefore named the carotid arch[WP]." [Wikipedia:Aortic_arches#Arch_3] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "3rd arch artery" EXACT [EHDAA2:0000070] synonym: "AA3" EXACT [ZFA:0005007] synonym: "carotid arch" EXACT [Wikipedia:Aortic_arches#Arch_3] synonym: "third aortic arch" EXACT [XAO:0000344] synonym: "third branchial arch artery" EXACT [] xref: AAO:0010419 xref: EHDAA2:0000070 xref: EMAPA:16687 xref: SCTID:308776001 xref: VHOG:0000147 xref: XAO:0000344 xref: ZFA:0005007 is_a: UBERON:0004363 ! aortic arch [Term] id: UBERON:0003121 name: aortic arch 4 namespace: uberon alt_id: UBERON:0004350 alt_id: UBERON:ZFA_0005008-XAO_0000355 def: "The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP]." [Wikipedia:Aortic_arches#Arch_4] comment: Development notes: Normally, the left fourth arch becomes the aortic arch, the right fourth arch contributes to the innominate artery[http://emedicine.medscape.com/article/899609-overview] in birds it is the right fourth arch which forms the permanent aorta // proximal right subclavian subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "4th arch artery" EXACT [EHDAA2:0000087] synonym: "AA4" EXACT [ZFA:0005008] synonym: "fourth aortic arch" EXACT [XAO:0000355] synonym: "fourth branchial arch artery" EXACT [] synonym: "systemic arch" RELATED [ISBN10:0073040584, XAO:0000355] xref: AAO:0010420 xref: EHDAA2:0000087 xref: EMAPA:17004 xref: SCTID:308777005 xref: VHOG:0000146 xref: XAO:0000355 xref: ZFA:0005008 is_a: UBERON:0004363 ! aortic arch [Term] id: UBERON:0003122 name: aortic arch 5 namespace: uberon alt_id: UBERON:ZFA_0005009-XAO_0000352 def: "The fifth arch disappears on both sides[WP]." [Wikipedia:Aortic_arches#Arch_5] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "AA5" EXACT [ZFA:0005009] synonym: "fifth aortic arch" EXACT [XAO:0000352] xref: AAO:0010421 xref: SCTID:308778000 xref: VHOG:0000145 xref: XAO:0000352 xref: ZFA:0005009 is_a: UBERON:0004363 ! aortic arch [Term] id: UBERON:0003123 name: aortic arch 6 namespace: uberon alt_id: UBERON:0004351 alt_id: UBERON:ZFA_0005016-XAO_0000353 def: "The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP]." [Wikipedia:Aortic_arches#Arch_6] comment: Development notes: the distal left sixth arch becomes the ductus arteriosus, the proximal sixth arches bilaterally contribute to the proximal branch pulmonary arteries[http://emedicine.medscape.com/article/899609-overview] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "6th arch artery" EXACT [EMAPA:17005] synonym: "AA6" EXACT [ZFA:0005016] synonym: "pulmonary arch" RELATED [ISBN10:0073040584] synonym: "sixth aortic arch" EXACT [XAO:0000353] synonym: "sixth branchial arch artery" EXACT [] xref: AAO:0010422 xref: EHDAA2:0000102 xref: EMAPA:17005 xref: SCTID:308779008 xref: VHOG:0000144 xref: XAO:0000353 xref: ZFA:0005016 is_a: UBERON:0004363 ! aortic arch [Term] id: UBERON:0003124 name: chorion namespace: uberon def: "The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [Wikipedia:Chorion] comment: Development notes: Extra-embryonic ectoderm[PMID:19829370]. Taxon notes: The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN10:0073040584 \"Vertebrates, Kardong\"]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "chorion (vertebrates)" EXACT [] xref: BTO:0000252 xref: EFO:0002780 xref: EHDAA2:0000245 xref: EHDAA:150 xref: EMAPA:16112 xref: EV:0100121 xref: FMA:80224 xref: GAID:1299 xref: MESH:A.16.254.403.473 xref: VHOG:0000200 xref: ncithesaurus:Chorion is_a: UBERON:0005631 ! extraembryonic membrane [Term] id: UBERON:0003125 name: vitelline membrane namespace: uberon def: "a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [Wikipedia:Vitelline_membrane] comment: TODO - consider GO CC request. GO:0030704-vitelline membrane formation considered a subclass of CC organization subset: dubious_grouping ! Indicates that subclasses in AOs may be inappropriately linked synonym: "yolk sac membrane" RELATED [BTO:0001450] synonym: "zona pellucida" RELATED [] xref: AAO:0010332 xref: BTO:0001450 xref: EHDAA2:0002220 xref: FBbt:00000042 xref: GAID:1318 xref: MESH:A.16.631.886 xref: XAO:0000030 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000476 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! acellular anatomical structure is_a: UBERON:0000478 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! extraembryonic structure relationship: part_of CL:0000365 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! zygote [Term] id: UBERON:0003126 name: trachea namespace: uberon def: "A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea] comment: In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx. subset: major_organ ! somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cartilaginous trachea" EXACT [] synonym: "tracheal tubule" RELATED [BTO:0001388] synonym: "vertebrate trachea" EXACT SENSU [] synonym: "windpipe" EXACT [] xref: AAO:0010140 xref: BTO:0001388 xref: EFO:0000935 xref: EHDAA2:0002066 xref: EHDAA:3078 xref: EMAPA:16853 xref: EV:0100040 xref: FMA:7394 xref: GAID:361 xref: MA:0000441 xref: MAT:0000137 xref: MESH:A.04.889 xref: MIAA:0000137 xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA xref: SCTID:181213009 xref: VHOG:0000371 xref: XAO:0000118 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: ncithesaurus:Trachea is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001005 ! respiratory airway is_a: UBERON:0005178 ! thoracic cavity organ relationship: part_of UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0007196 ! tracheobronchial tree [Term] id: UBERON:0003127 name: open tracheal system trachea namespace: uberon def: "A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea] comment: TODO check if is_a epithelium subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "invertebrate trachea" EXACT [] synonym: "trachea" BROAD SENSU [FBbt:00005043] xref: FBbt:00005043 xref: SPD:0000434 xref: TADS:0000315 is_a: UBERON:0001005 ! respiratory airway relationship: part_of UBERON:0005155 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! open tracheal system [Term] id: UBERON:0003128 name: cranium namespace: uberon def: "Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] comment: The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bones of cranium" EXACT [FMA:71325] synonym: "calvarium" RELATED [BTO:0001328] synonym: "cranial skeleton" RELATED [] synonym: "epicranial plate" RELATED [] synonym: "ossa cranii" EXACT [FMA:71325, FMA:TA] synonym: "skeletal system of head" RELATED [] xref: BILA:0000115 xref: BTO:0001328 xref: EFO:0000831 xref: EHDAA2:0000325 xref: EHDAA:6029 xref: EMAPA:17680 xref: FMA:71325 xref: MA:0000316 xref: MAT:0000340 xref: MIAA:0000340 xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA xref: SCTID:181889008 xref: TAO:0000737 xref: VHOG:0000334 xref: XAO:0003075 xref: ZFA:0000737 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0003129 ! skull relationship: part_of UBERON:0003457 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! head bone property_value: "spatially_disjoint_from" UBERON:0001684 [Term] id: UBERON:0003129 name: skull namespace: uberon def: "Anatomical structure that is part of the head consisting entirely of cranium and mandible." [Wikipedia:Skull, http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376] comment: In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cranial skeleton" RELATED [] synonym: "skeletal system of head" RELATED [] xref: AAO:0000109 xref: BTO:0001295 xref: FMA:46565 xref: GAID:82 xref: MESH:A.02.835.232.781 xref: OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA xref: galen:Skull xref: ncithesaurus:Skull is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0005944 ! axial skeleton [Term] id: UBERON:0003130 name: arthropod sternum namespace: uberon alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331 def: "ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "sternum" BROAD [] xref: FBbt:00004557 xref: HAO:0000956 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0003131 name: arthropod tibia namespace: uberon def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg] comment: Homologies of leg segments between groups are difficult to prove and are the source of much argument. Some authors posit up to eleven segments per leg for the most recent common ancestor of extant arthropods [1], but modern arthropods have eight or fewer. It has been argued [2][3] that the ancestral leg need not have been so complex, and that other events, such as the successive loss of function of a Hox-gene could result in parallel gains of leg segments. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FBbt:00004642 xref: HAO:0001017 xref: TADS:0000281 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0005895 ! insect leg [Term] id: UBERON:0003132 name: arthropod hypopharynx namespace: uberon def: "A median tonguelike structure arising from the mouth." [http://www.britannica.com/EBchecked/topic/279974/hypopharynx] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: FBbt:00005751 xref: HAO:0000409 xref: TGMA:0000090 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0006562 ! pharynx relationship: part_of UBERON:0001041 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! foregut [Term] id: UBERON:0003133 name: reproductive organ namespace: uberon def: "An organ involved in reproduction" [UBERON:xp] comment: GO uses genitalia for the singular organ subset: functional_classification ! functional_classification subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "genital organ" EXACT [] synonym: "genitalia" RELATED PLURAL [] synonym: "reproductive system organ" EXACT [] synonym: "sex organ" EXACT [] xref: EMAPA:17381 xref: MA:0001752 xref: MESH:A.05.360 xref: OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA xref: SCTID:128181006 xref: TGMA:0000591 xref: WBbt:0008422 xref: ncithesaurus:Genitalia is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0003134 name: female reproductive organ namespace: uberon def: "A female organ involved in reproduction" [UBERON:xp] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "female organism reproductive organ" EXACT [OBOL:automatic] synonym: "female organism reproductive structure" EXACT [OBOL:automatic] synonym: "female organism reproductive system organ" EXACT [OBOL:automatic] synonym: "female organism sex organ" EXACT [OBOL:automatic] synonym: "female reproductive system organ" EXACT [] synonym: "female sex organ" EXACT [] synonym: "reproductive organ of female organism" EXACT [OBOL:automatic] synonym: "reproductive structure of female organism" EXACT [OBOL:automatic] synonym: "reproductive system organ of female organism" EXACT [OBOL:automatic] synonym: "sex organ of female organism" EXACT [OBOL:automatic] xref: EMAPA:17959 xref: MA:0000544 is_a: UBERON:0003133 ! reproductive organ is_a: UBERON:0005179 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pelvis organ relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0003135 name: male reproductive organ namespace: uberon def: "A male organ involved in reproduction" [UBERON:xp] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "male organism reproductive organ" EXACT [OBOL:automatic] synonym: "male organism reproductive structure" EXACT [OBOL:automatic] synonym: "male organism reproductive system organ" EXACT [OBOL:automatic] synonym: "male organism sex organ" EXACT [OBOL:automatic] synonym: "male reproductive system organ" EXACT [] synonym: "male sex organ" EXACT [] synonym: "reproductive organ of male organism" EXACT [OBOL:automatic] synonym: "reproductive structure of male organism" EXACT [OBOL:automatic] synonym: "reproductive system organ of male organism" EXACT [OBOL:automatic] synonym: "sex organ of male organism" EXACT [OBOL:automatic] xref: EMAPA:17968 xref: MA:0000545 is_a: UBERON:0003133 ! reproductive organ is_a: UBERON:0005179 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pelvis organ relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0003136 name: tagma namespace: uberon alt_id: UBERON:FBbt_00000002-HAO_0000988 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00000002 xref: HAO:0000988 [Term] id: UBERON:0003137 name: antennal segment namespace: uberon alt_id: UBERON:FBbt_00000009-HAO_0000104 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00000009 xref: HAO:0000104 [Term] id: UBERON:0003138 name: thoracic segment namespace: uberon alt_id: UBERON:FBbt_00000016-HAO_0001013 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00000016 xref: HAO:0001013 [Term] id: UBERON:0003139 name: larval tagma namespace: uberon alt_id: UBERON:FBbt_00001728-HAO_0000462 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00001728 xref: HAO:0000462 [Term] id: UBERON:0003140 name: larval thorax namespace: uberon alt_id: UBERON:FBbt_00001741-HAO_0000463 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00001741 xref: HAO:0000463 [Term] id: UBERON:0003141 name: larval abdomen namespace: uberon alt_id: UBERON:FBbt_00001746-HAO_0000460 is_obsolete: true xref: FBbt:00001746 xref: HAO:0000460 [Term] id: UBERON:0003142 name: prepupa namespace: uberon alt_id: UBERON:FBbt_00002952-HAO_0000812 synonym: "PP" RELATED [FBbt:00002952] xref: BTO:0001110 xref: FBbt:00002952 xref: HAO:0000812 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0003143 name: pupa namespace: uberon alt_id: UBERON:FBbt_00002953-HAO_0000886 def: "Organism at the pupal stage. The pupal stage is a life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa] xref: BTO:0001143 xref: EFO:0002684 xref: FBbt:00002953 xref: HAO:0000886 xref: OpenCyc:Mx4rwQCBr5wpEbGdrcN5Y29ycA is_a: UBERON:0000468 ! multi-cellular organism relationship: develops_from UBERON:0003142 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! prepupa [Term] id: UBERON:0003144 name: adult tagma namespace: uberon alt_id: UBERON:FBbt_00003005-HAO_0000089 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00003005 xref: HAO:0000089 [Term] id: UBERON:0003145 name: adult arthropod thorax namespace: uberon alt_id: UBERON:FBbt_00003018-HAO_0000090 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00003018 xref: HAO:0000090 [Term] id: UBERON:0003146 name: adult arthropod abdomen namespace: uberon alt_id: UBERON:FBbt_00003023-HAO_0000088 is_obsolete: true xref: FBbt:00003023 xref: HAO:0000088 [Term] id: UBERON:0003147 name: peritreme namespace: uberon alt_id: UBERON:FBbt_00003121-HAO_0000712 def: "That part of the integument of an insect which surrounds the spiracles." [http://www.answers.com/topic/peritreme] is_obsolete: true comment: arthropod specific groupings belong in separate ontology. term also used for edge of the aperture of a univalve shell synonym: "rim" RELATED [FBbt:00003121] xref: FBbt:00003121 xref: HAO:0000712 [Term] id: UBERON:0003148 name: sclerite namespace: uberon alt_id: UBERON:FBbt_00004475-HAO_0000909 def: "hardened portions of arthropod exoskeletons." [Wikipedia:Sclerite] is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "plate" RELATED [FBbt:00004475] xref: FBbt:00004475 xref: HAO:0000909 [Term] id: UBERON:0003149 name: tergite namespace: uberon alt_id: UBERON:FBbt_00004476-HAO_0001005 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "abdominal tergite" EXACT [FBbt:00004476] xref: FBbt:00004476 xref: HAO:0001005 [Term] id: UBERON:0003150 name: sternite namespace: uberon alt_id: UBERON:FBbt_00004477-HAO_0000955 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "abdominal sternite" EXACT [FBbt:00004477] xref: FBbt:00004477 xref: HAO:0000955 [Term] id: UBERON:0003151 name: foramen namespace: uberon alt_id: UBERON:FBbt_00004478-HAO_0000345 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004478 xref: HAO:0000345 [Term] id: UBERON:0003152 name: phragma namespace: uberon alt_id: UBERON:FBbt_00004480-HAO_0000716 def: "The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]." [HAO:0000716] is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004480 xref: HAO:0000716 [Term] id: UBERON:0003153 name: head capsule namespace: uberon alt_id: UBERON:FBbt_00004482-HAO_0000398 xref: BTO:0004711 xref: EFO:0001927 xref: FBbt:00004482 xref: HAO:0000398 is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm relationship: part_of UBERON:0000033 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! head [Term] id: UBERON:0003154 name: gena namespace: uberon alt_id: UBERON:FBbt_00004491-HAO_0000371 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "cheek" RELATED [FBbt:00004491] xref: FBbt:00004491 xref: HAO:0000371 [Term] id: UBERON:0003155 name: arthropod occiput namespace: uberon alt_id: UBERON:FBbt_00004492-HAO_0000658 comment: arthropod specific groupings belong in separate ontology, but this is retained for disambiguation purposes synonym: "occiput" RELATED SENSU [FBbt:00004492] xref: FBbt:00004492 xref: HAO:0000658 xref: TGMA:0000041 is_a: UBERON:0006056 ! posterior surface of head relationship: part_of UBERON:0003153 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! head capsule disjoint_from: UBERON:0006054 ! surface of occiput [Term] id: UBERON:0003156 name: postocciput namespace: uberon alt_id: UBERON:FBbt_00004494-HAO_0000790 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004494 xref: HAO:0000790 [Term] id: UBERON:0003157 name: postgena namespace: uberon alt_id: UBERON:FBbt_00004496-HAO_0000776 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004496 xref: HAO:0000776 [Term] id: UBERON:0003158 name: tentorial pit namespace: uberon alt_id: UBERON:FBbt_00004501-HAO_0000999 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004501 xref: HAO:0000999 [Term] id: UBERON:0003159 name: anterior tentorial pit namespace: uberon alt_id: UBERON:FBbt_00004502-HAO_0000126 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004502 xref: HAO:0000126 [Term] id: UBERON:0003160 name: posterior tentorial pit namespace: uberon alt_id: UBERON:FBbt_00004503-HAO_0000768 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004503 xref: HAO:0000768 [Term] id: UBERON:0003161 name: dorsal ocellus namespace: uberon alt_id: UBERON:FBbt_00004505-HAO_0000661 def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli] synonym: "dorsal ocelli" RELATED PLURAL [] synonym: "ocelli" RELATED PLURAL [] synonym: "ocellus" EXACT [] xref: BTO:0001758 xref: FBbt:00004505 xref: HAO:0000661 is_a: UBERON:0000963 ! head sensillum is_a: UBERON:0000970 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! eye relationship: part_of UBERON:0000033 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! head [Term] id: UBERON:0003162 name: lateral ocellus namespace: uberon alt_id: UBERON:FBbt_00004506-HAO_0000481 def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli] xref: FBbt:00004506 xref: HAO:0000481 is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003163 name: mouthpart namespace: uberon alt_id: UBERON:FBbt_00004520-HAO_0000639 is_obsolete: true comment: TODO xref: FBbt:00004520 xref: HAO:0000639 [Term] id: UBERON:0003164 name: clypeus namespace: uberon alt_id: UBERON:FBbt_00004521-HAO_0000212 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004521 xref: HAO:0000212 [Term] id: UBERON:0003165 name: cibarium namespace: uberon alt_id: UBERON:FBbt_00004526-HAO_0000201 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "atrium" RELATED [FBbt:00004526] xref: FBbt:00004526 xref: HAO:0000201 [Term] id: UBERON:0003166 name: prementum namespace: uberon alt_id: UBERON:FBbt_00004534-HAO_0000804 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "theca" RELATED [FBbt:00004534] xref: FBbt:00004534 xref: HAO:0000804 [Term] id: UBERON:0003167 name: lacinia namespace: uberon alt_id: UBERON:FBbt_00004536-HAO_0000457 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004536 xref: HAO:0000457 [Term] id: UBERON:0003168 name: mentum namespace: uberon alt_id: UBERON:FBbt_00004544-HAO_0000534 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004544 xref: HAO:0000534 [Term] id: UBERON:0003169 name: cervical sclerite namespace: uberon alt_id: UBERON:FBbt_00004548-HAO_0000195 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004548 xref: HAO:0000195 [Term] id: UBERON:0003170 name: tergum namespace: uberon alt_id: UBERON:FBbt_00004552-HAO_0001006 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004552 xref: HAO:0001006 [Term] id: UBERON:0003171 name: episternum namespace: uberon alt_id: UBERON:FBbt_00004554-HAO_0000303 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004554 xref: HAO:0000303 [Term] id: UBERON:0003172 name: epimeron namespace: uberon alt_id: UBERON:FBbt_00004556-HAO_0000299 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004556 xref: HAO:0000299 [Term] id: UBERON:0003173 name: pronotum namespace: uberon alt_id: UBERON:FBbt_00004561-HAO_0000853 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004561 xref: HAO:0000853 [Term] id: UBERON:0003174 name: furcasternum namespace: uberon alt_id: UBERON:FBbt_00004570-HAO_0000367 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004570 xref: HAO:0000367 [Term] id: UBERON:0003175 name: prescutum namespace: uberon alt_id: UBERON:FBbt_00004582-HAO_0000815 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004582 xref: HAO:0000815 [Term] id: UBERON:0003176 name: anterior notal wing process namespace: uberon alt_id: UBERON:FBbt_00004585-HAO_0000120 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004585 xref: HAO:0000120 [Term] id: UBERON:0003177 name: posterior notal wing process namespace: uberon alt_id: UBERON:FBbt_00004586-HAO_0000758 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004586 xref: HAO:0000758 [Term] id: UBERON:0003178 name: postnotum namespace: uberon alt_id: UBERON:FBbt_00004588-HAO_0000786 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "postscutellum" RELATED [FBbt:00004588] xref: FBbt:00004588 xref: HAO:0000786 [Term] id: UBERON:0003179 name: pleural wing process namespace: uberon alt_id: UBERON:FBbt_00004595-HAO_0000726 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004595 xref: HAO:0000726 [Term] id: UBERON:0003180 name: anepisternum namespace: uberon alt_id: UBERON:FBbt_00004597-HAO_0000094 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "mesopleurite" RELATED [FBbt:00004597] xref: FBbt:00004597 xref: HAO:0000094 [Term] id: UBERON:0003181 name: scutoscutellar suture namespace: uberon alt_id: UBERON:FBbt_00004601-HAO_0000920 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004601 xref: HAO:0000920 [Term] id: UBERON:0003182 name: pleural suture namespace: uberon alt_id: UBERON:FBbt_00004603-HAO_0000725 is_obsolete: true xref: FBbt:00004603 xref: HAO:0000725 [Term] id: UBERON:0003183 name: notopleural suture namespace: uberon alt_id: UBERON:FBbt_00004604-HAO_0000649 is_obsolete: true xref: FBbt:00004604 xref: HAO:0000649 [Term] id: UBERON:0003184 name: mesofurca namespace: uberon alt_id: UBERON:FBbt_00004619-HAO_0000547 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "mesothoracic sternal apophysis" RELATED [FBbt:00004619] xref: FBbt:00004619 xref: HAO:0000547 [Term] id: UBERON:0003185 name: metafurca namespace: uberon alt_id: UBERON:FBbt_00004638-HAO_0000592 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "metathoracic sternal apophysis" RELATED [FBbt:00004638] xref: FBbt:00004638 xref: HAO:0000592 [Term] id: UBERON:0003186 name: coxa namespace: uberon alt_id: UBERON:FBbt_00004641-HAO_0000228 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004641 xref: HAO:0000228 [Term] id: UBERON:0003187 name: pretarsus namespace: uberon alt_id: UBERON:FBbt_00004653-HAO_0000820 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004653 xref: HAO:0000820 [Term] id: UBERON:0003188 name: auxilia namespace: uberon alt_id: UBERON:FBbt_00004654-HAO_0000153 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004654 xref: HAO:0000153 [Term] id: UBERON:0003189 name: unguitractor plate namespace: uberon alt_id: UBERON:FBbt_00004658-HAO_0001043 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004658 xref: HAO:0001043 [Term] id: UBERON:0003190 name: empodium namespace: uberon alt_id: UBERON:FBbt_00004659-HAO_0000288 is_obsolete: true xref: FBbt:00004659 xref: HAO:0000288 [Term] id: UBERON:0003191 name: tegula namespace: uberon alt_id: UBERON:FBbt_00004730-HAO_0000993 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004730 xref: HAO:0000993 [Term] id: UBERON:0003192 name: axillary sclerite namespace: uberon alt_id: UBERON:FBbt_00004737-HAO_0000159 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004737 xref: HAO:0000159 [Term] id: UBERON:0003193 name: axillary cord namespace: uberon alt_id: UBERON:FBbt_00004744-HAO_0000157 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004744 xref: HAO:0000157 [Term] id: UBERON:0003194 name: imaginal disc-derived wing vein namespace: uberon alt_id: UBERON:FBbt_00004751-HAO_0001095 xref: FBbt:00004751 xref: HAO:0001095 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000984 ! imaginal disc-derived wing relationship: part_of UBERON:0000914 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! organismal segment [Term] id: UBERON:0003195 name: crossvein namespace: uberon alt_id: UBERON:FBbt_00004765-HAO_0000236 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004765 xref: HAO:0000236 [Term] id: UBERON:0003196 name: wing cell namespace: uberon alt_id: UBERON:FBbt_00004769-HAO_0001091 is_obsolete: true comment: arthropod specific groupings belong in separate ontology synonym: "intervein" RELATED [FBbt:00004769] xref: FBbt:00004769 xref: HAO:0001091 [Term] id: UBERON:0003197 name: costal cell namespace: uberon alt_id: UBERON:FBbt_00004770-HAO_0000226 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004770 xref: HAO:0000226 [Term] id: UBERON:0003198 name: aedeagus namespace: uberon alt_id: UBERON:FBbt_00004850-HAO_0000091 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004850 xref: HAO:0000091 [Term] id: UBERON:0003199 name: egg chamber namespace: uberon alt_id: UBERON:FBbt_00004894-HAO_0000287 synonym: "follicle" RELATED [FBbt:00004894] synonym: "germarium derived egg chamber" EXACT [FBbt:00004894] xref: FBbt:00004894 xref: HAO:0000287 xref: ncithesaurus:Follicle is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000474 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! female reproductive system [Term] id: UBERON:0003200 name: pedicel namespace: uberon alt_id: UBERON:FBbt_00004920-HAO_0000706 is_obsolete: true xref: FBbt:00004920 xref: HAO:0000706 [Term] id: UBERON:0003201 name: exocuticle namespace: uberon alt_id: UBERON:FBbt_00004973-HAO_0000311 def: "The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle." [BTO:0001602] xref: BTO:0001602 xref: FBbt:00004973 xref: HAO:0000311 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003142 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! prepupa [Term] id: UBERON:0003202 name: endocuticle namespace: uberon alt_id: UBERON:FBbt_00004974-HAO_0000290 def: "The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin." [BTO:0001603] xref: BTO:0001603 xref: FBbt:00004974 xref: HAO:0000290 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003142 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! prepupa [Term] id: UBERON:0003203 name: apodeme namespace: uberon alt_id: UBERON:FBbt_00005091-HAO_0000142 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00005091 xref: HAO:0000142 [Term] id: UBERON:0003204 name: epipharynx namespace: uberon alt_id: UBERON:FBbt_00005750-HAO_0000301 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00005750 xref: HAO:0000301 [Term] id: UBERON:0003205 name: articulation namespace: uberon alt_id: UBERON:FBbt_00005811-HAO_0000151 is_obsolete: true comment: incorrect grouping xref: FBbt:00005811 xref: HAO:0000151 xref: ncithesaurus:Articulation [Term] id: UBERON:0003206 name: apophysis namespace: uberon alt_id: UBERON:FBbt_00005813-HAO_0000143 is_obsolete: true comment: incorrect grouping xref: FBbt:00005813 xref: FMA:75428 xref: HAO:0000143 [Term] id: UBERON:0003207 name: appendage segment namespace: uberon alt_id: UBERON:FBbt_00007018-HAO_0000145 is_obsolete: true comment: arthropod specific groupings belong in separate ontology xref: FBbt:00007018 xref: HAO:0000145 [Term] id: UBERON:0003209 name: blood nerve barrier namespace: uberon def: "barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] is_a: UBERON:0000119 ! cell layer [Term] id: UBERON:0003210 name: blood-cerebrospinal fluid barrier namespace: uberon def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088] is_a: UBERON:0000119 ! cell layer [Term] id: UBERON:0003211 name: median ocellus namespace: uberon def: "The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000526, Wikipedia:Ocellus#Ocelli] xref: FBbt:00004507 xref: HAO:0000526 is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003212 name: gustatory organ namespace: uberon def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] synonym: "gustatory organ system organ" EXACT [OBOL:automatic] synonym: "gustatory system organ" EXACT [OBOL:automatic] synonym: "organ of gustatory organ system" EXACT [OBOL:automatic] synonym: "organ of gustatory system" EXACT [OBOL:automatic] synonym: "organ of taste system" EXACT [OBOL:automatic] synonym: "taste organ" EXACT [] synonym: "taste system organ" EXACT [OBOL:automatic] xref: FBbt:00005159 xref: FMA:77853 is_a: UBERON:0000005 ! chemosensory organ relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0003214 name: mammary gland alveolus namespace: uberon def: "a sac-like structure that is found in the mature gland[GO]." [GO:0060749] synonym: "alveolus of lactiferous gland" EXACT [OBOL:automatic] synonym: "alveolus of lobe of breast" EXACT [OBOL:automatic] synonym: "alveolus of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "alveolus of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous alveolus" EXACT [] synonym: "lactiferous gland alveolus" EXACT [] synonym: "lobe of breast alveolus" EXACT [OBOL:automatic] synonym: "lobe of mammary gland alveolus" EXACT [OBOL:automatic] synonym: "mammary alveolus" EXACT [] xref: FMA:73285 xref: MA:0002760 is_a: UBERON:0003215 ! alveolus is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001912 ! lobule of lactiferous gland [Term] id: UBERON:0003215 name: alveolus namespace: uberon def: "organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus] xref: EFO:0002513 xref: EV:0100043 xref: FMA:82493 xref: OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA xref: ncithesaurus:Alveolus is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003216 name: hard palate namespace: uberon alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161 def: "anterior portion of the palate consisting of bone and mucous membranes[GO]." [GO:0060022, Wikipedia:Hard_palate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "hard palate" EXACT [] xref: EMAPA:18952 xref: FMA:55023 xref: GAID:221 xref: MA:0002477 xref: MAT:0000161 xref: MESH:A.02.835.232.781.324.502.660 xref: MIAA:0000161 xref: SCTID:245778002 xref: ncithesaurus:Hard_Palate is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0003217 name: neural lobe of neurohypophysis namespace: uberon alt_id: UBERON:FMA_74636-ZFA_0001271 def: "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]." [Wikipedia:Neurohypophysis#cite_note-1] comment: TODO - compare with UBERON:0002198 subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "pars nervosa (neurohypophysis)" EXACT [FMA:74636, FMA:TA] synonym: "pars nervosa neurohypophysis" EXACT [FMA:74636, FMA:TA] synonym: "pars nervosa of hypophysis" EXACT [] synonym: "pars nervosa of neurohypophysis" EXACT [] synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT [] synonym: "pars nervosa pituitary gland" EXACT [NIF_GrossAnatomy:birnlex_941] synonym: "pars posterior" EXACT [MA:0000860] synonym: "posterior lobe" BROAD [BTO:0000561] synonym: "posterior lobe of neurohypophysis" EXACT [FMA:74636] synonym: "posterior lobe-3" EXACT [] xref: BTO:0000561 xref: EHDAA2:0001418 xref: EHDAA:7542 xref: FMA:74636 xref: MA:0000860 xref: NIF_GrossAnatomy:birnlex_941 xref: SCTID:424523008 xref: VHOG:0001180 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002784 ! regional part of diencephalon is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002198 ! neurohypophysis [Term] id: UBERON:0003218 name: ovary septum namespace: uberon def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126] is_a: UBERON:0003037 ! septum is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0003219 name: shell septum namespace: uberon def: "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." [GO:0080126, Wikipedia:Septum_(marine_biology)] is_a: UBERON:0003037 ! septum [Term] id: UBERON:0003220 name: metanephric mesenchyme namespace: uberon def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]" [GO:0072075, Wikipedia:Metanephric_blastema] comment: (TODO - split?) Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 \"Developmental Biology\"] synonym: "metanephric blastema" EXACT [Wikipedia:Metanephric_blastema] synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema] synonym: "metanephrogenic mesenchyme" EXACT [EHDAA:5021] synonym: "metanephros associated mesenchyme" EXACT [RETIRED_EHDAA2:0001139] xref: EHDAA2:0004062 xref: EHDAA:4041 xref: EHDAA:5021 xref: EHDAA:5915 xref: EMAPA:17208 xref: EMAPA:17375 xref: EMAPA:29990 xref: RETIRED_EHDAA2:0001139 xref: SCTID:361529008 xref: VHOG:0000540 is_a: UBERON:0003918 ! kidney mesenchyme is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003221 name: phalanx namespace: uberon def: "Long bones of fingers and toes[Obol]. In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP]." [Wikipedia:Phalanx_bones] synonym: "digit long bone" EXACT [OBOL:automatic] synonym: "long bone of digit" EXACT [OBOL:automatic] synonym: "phalanges" EXACT PLURAL [] xref: MA:0000304 xref: OpenCyc:Mx4rvolPZpwpEbGdrcN5Y29ycA xref: SCTID:290029003 xref: galen:Phalanx xref: ncithesaurus:Phalanx is_a: UBERON:0002495 ! long bone is_a: UBERON:0003606 ! limb long bone relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0003222 name: flexor digitorum superficialis namespace: uberon def: "an extrinsic flexor muscle of the fingers at the proximal interphalangeal joints. The muscle has two classically described heads - the humeroulnar and radial - and it is between these heads that the median nerve and ulnar artery pass. The ulnar collateral ligament of elbow joint gives its origin to part of this muscle. The primary function of flexor digitorum superficialis is flexion of the middle phalanges of the fingers at the proximal interphalangeal joints, however under continued action it also flexes the metacarpophalangeal joints and wrist joint[WP]." [Wikipedia:Flexor_digitorum_superficialis_muscle] synonym: "flexor digitorum superficialis muscle" EXACT [Wikipedia:Flexor_digitorum_superficialis_muscle] xref: FMA:38469 is_a: UBERON:0004254 ! forelimb zeugopod muscle [Term] id: UBERON:0003224 name: chorion syncytiotrophoblast namespace: uberon comment: todo - check xref: EHDAA2:0001973 xref: EHDAA:156 is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0003225 name: primitive endoderm of inner cell mass namespace: uberon def: "A primitive endoderm that is part of a inner cell mass [Obol]." [OBOL:automatic] comment: TODO - check. Note in MP, hypoblast and primitive endoderm are exact synonyms subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. synonym: "hypoblast" RELATED [MP:0011185] synonym: "inner cell mass primitive endoderm" EXACT [OBOL:automatic] xref: EHDAA:44 is_a: UBERON:0000417 ! primitive endoderm [Term] id: UBERON:0003228 name: supinator namespace: uberon def: "a broad muscle in the posterior compartment of the forearm, curved around the upper third of the radius. Its function is to supinate the forearm." [Wikipedia:Supinator] comment: TODO: The term \"supinator\" can also refer more generally to a muscle that causes supination of a part of the body. In older texts, the term \"supinator longus\" was used to refer to the brachioradialis, and \"supinator brevis\" was used to the muscle now known as the supinator. synonym: "supinator muscle" EXACT [FMA:75002] xref: FMA:38512 xref: FMA:75002 xref: SCTID:181634007 is_a: UBERON:0004254 ! forelimb zeugopod muscle [Term] id: UBERON:0003229 name: epithelium of elbow namespace: uberon def: "An epithelium that is part of a elbow [Obol]." [OBOL:automatic] synonym: "cubital region epithelial tissue" EXACT [OBOL:automatic] synonym: "cubital region epithelium" EXACT [OBOL:automatic] synonym: "elbow epithelial tissue" EXACT [OBOL:automatic] synonym: "elbow epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of cubital region" EXACT [OBOL:automatic] synonym: "epithelial tissue of elbow" EXACT [OBOL:automatic] synonym: "epithelium of cubital region" EXACT [OBOL:automatic] xref: EHDAA2:0000430 xref: EHDAA:4168 xref: EHDAA:6214 xref: EMAPA:17415 xref: VHOG:0001044 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003230 name: epithelium of carpal region namespace: uberon def: "An epithelium that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region epithelial tissue" EXACT [OBOL:automatic] synonym: "carpal region epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of carpal region" EXACT [OBOL:automatic] synonym: "epithelial tissue of wrist" EXACT [OBOL:automatic] synonym: "epithelium of wrist" EXACT [OBOL:automatic] synonym: "wrist epithelial tissue" EXACT [OBOL:automatic] synonym: "wrist epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0000219 xref: EHDAA:5198 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003231 name: epithelium of hip namespace: uberon def: "An epithelium that is part of a hip [Obol]." [OBOL:automatic] synonym: "epithelial tissue of hip" EXACT [OBOL:automatic] synonym: "epithelial tissue of hip region" EXACT [OBOL:automatic] synonym: "epithelial tissue of regio coxae" EXACT [OBOL:automatic] synonym: "epithelium of hip region" EXACT [OBOL:automatic] synonym: "epithelium of regio coxae" EXACT [OBOL:automatic] synonym: "hip epithelial tissue" EXACT [OBOL:automatic] synonym: "hip epithelium" EXACT [OBOL:automatic] synonym: "hip region epithelial tissue" EXACT [OBOL:automatic] synonym: "hip region epithelium" EXACT [OBOL:automatic] synonym: "regio coxae epithelial tissue" EXACT [OBOL:automatic] synonym: "regio coxae epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0000784 xref: EHDAA:5155 xref: EHDAA:6180 xref: EMAPA:17491 xref: VHOG:0000779 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003232 name: epithelium of knee namespace: uberon def: "An epithelium that is part of a knee [Obol]." [OBOL:automatic] synonym: "epithelial tissue of knee" EXACT [OBOL:automatic] synonym: "knee epithelial tissue" EXACT [OBOL:automatic] synonym: "knee epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0000896 xref: EHDAA:5161 xref: EHDAA:6186 xref: EMAPA:17494 xref: VHOG:0000810 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003233 name: epithelium of shoulder namespace: uberon def: "An epithelium that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "epithelial tissue of shoulder" EXACT [OBOL:automatic] synonym: "shoulder epithelial tissue" EXACT [OBOL:automatic] synonym: "shoulder epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001835 xref: EHDAA:4182 xref: EHDAA:6230 xref: EMAPA:17422 xref: VHOG:0000761 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003234 name: extensor pollicis longus namespace: uberon def: "The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers." [Wikipedia:Extensor_pollicis_longus_muscle] synonym: "extensor pollicis longis" RELATED [Wikipedia:Extensor_pollicis_longus_muscle] synonym: "extensor pollicis longus muscle" EXACT [Wikipedia:Extensor_pollicis_longus_muscle] xref: FMA:38521 xref: SCTID:361820003 is_a: UBERON:0004254 ! forelimb zeugopod muscle [Term] id: UBERON:0003235 name: epithelium of upper jaw namespace: uberon def: "An epithelium that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "epithelial tissue of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "epithelial tissue of upper jaw" EXACT [OBOL:automatic] synonym: "epithelium of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "palatoquadrate arch epithelial tissue" EXACT [OBOL:automatic] synonym: "palatoquadrate arch epithelium" EXACT [OBOL:automatic] synonym: "upper jaw epithelial tissue" EXACT [OBOL:automatic] synonym: "upper jaw epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0002119 xref: EHDAA:8027 xref: EMAPA:17943 xref: EMAPA:18971 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003236 name: epithelium of lower jaw namespace: uberon def: "An epithelium that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lower jaw" EXACT [OBOL:automatic] synonym: "epithelial tissue of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "epithelium of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower jaw epithelial tissue" EXACT [OBOL:automatic] synonym: "lower jaw epithelium" EXACT [OBOL:automatic] synonym: "ventral mandibular arch epithelial tissue" EXACT [OBOL:automatic] synonym: "ventral mandibular arch epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001019 xref: EHDAA:7999 xref: EMAPA:17922 xref: EMAPA:18968 xref: VHOG:0000802 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0003238 name: epithelium of superior semicircular canal namespace: uberon def: "An epithelium that is part of an anterior semicircular canal [Obol]." [OBOL:automatic] synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic] synonym: "epithelial tissue of superior semicircular canal" EXACT [OBOL:automatic] synonym: "epithelium of anterior semicircular canal" EXACT [OBOL:automatic] synonym: "superior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "superior semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7806 xref: EMAPA:17301 xref: RETIRED_EHDAA2:0001961 xref: VHOG:0001039 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006937 ! inner ear epithelium [Term] id: UBERON:0003239 name: epithelium of posterior semicircular canal namespace: uberon def: "An epithelium that is part of a posterior semicircular canal [Obol]." [OBOL:automatic] synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7800 xref: EMAPA:17298 xref: RETIRED_EHDAA2:0001491 xref: VHOG:0000758 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006937 ! inner ear epithelium [Term] id: UBERON:0003240 name: epithelium of lateral semicircular canal namespace: uberon def: "An epithelium that is part of a lateral semicircular canal [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7794 xref: EMAPA:17823 xref: RETIRED_EHDAA2:0000922 xref: VHOG:0000480 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006937 ! inner ear epithelium [Term] id: UBERON:0003241 name: epithelium of utricle namespace: uberon def: "An epithelium that is part of a utricle of membranous labyrinth [Obol]." [OBOL:automatic] comment: todo - check relationships w.r.t macula synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of utricle of membranous labyrinth" NARROW [FMA:75604] synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4730 xref: EMAPA:17295 xref: EMAPA:17298 xref: EMAPA:17301 xref: EMAPA:17820 xref: EMAPA:17823 xref: FMA:75604 xref: MA:0001204 xref: RETIRED_EHDAA2:0002155 xref: VHOG:0000634 is_a: UBERON:0006932 ! vestibular epithelium is_a: UBERON:0006934 ! sensory epithelium relationship: part_of UBERON:0002214 ! macula of utricle of membranous labyrinth [Term] id: UBERON:0003242 name: epithelium of saccule namespace: uberon def: "An epithelium that is part of a saccule of membranous labyrinth [Obol]." [OBOL:automatic] comment: todo - check relationships w.r.t macula synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of saccule of membranous labyrinth" RELATED [FMA:75605] synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4724 xref: EMAPA:17292 xref: FMA:75605 xref: MA:0001202 xref: RETIRED_EHDAA2:0001771 xref: VHOG:0000633 is_a: UBERON:0006932 ! vestibular epithelium is_a: UBERON:0006934 ! sensory epithelium [Term] id: UBERON:0003243 name: epithelium of cochlear duct namespace: uberon def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Obol]." [OBOL:automatic] synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic] synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic] synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic] synonym: "cochlear duct epithelium" EXACT [OBOL:automatic] synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic] synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic] synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic] synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] xref: EHDAA:4722 xref: EMAPA:17600 xref: RETIRED_EHDAA2:0000264 xref: VHOG:0000640 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006937 ! inner ear epithelium [Term] id: UBERON:0003244 name: epithelium of mammary gland namespace: uberon def: "An epithelium that is part of a lactiferous gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "epithelial tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of mammary gland" EXACT [OBOL:automatic] synonym: "epithelium of lactiferous gland" EXACT [FMA:74445] synonym: "epithelium of lobe of breast" EXACT [OBOL:automatic] synonym: "epithelium of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland epithelial tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland epithelium" EXACT [OBOL:automatic] synonym: "lobe of breast epithelial tissue" EXACT [OBOL:automatic] synonym: "lobe of breast epithelium" EXACT [OBOL:automatic] synonym: "lobe of mammary gland epithelial tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland epithelium" EXACT [OBOL:automatic] synonym: "mammary epithelium" EXACT [BTO:0001430] synonym: "mammary gland epithelial tissue" EXACT [OBOL:automatic] synonym: "mammary gland epithelium" EXACT [OBOL:automatic] xref: BTO:0001430 xref: EHDAA2:0001057 xref: EHDAA:6526 xref: EMAPA:17760 xref: FMA:74445 xref: MA:0000792 xref: VHOG:0001088 xref: ncithesaurus:Mammary_Epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003246 name: epithelium of endolymphatic sac namespace: uberon def: "An epithelium that is part of a endolymphatic sac [Obol]." [OBOL:automatic] synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic] xref: EHDAA:7765 xref: EMAPA:17595 xref: RETIRED_EHDAA2:0000443 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0003247 name: epithelium of forearm namespace: uberon def: "An epithelium that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region epithelial tissue" EXACT [OBOL:automatic] synonym: "antebrachial region epithelium" EXACT [OBOL:automatic] synonym: "arm middle limb segment epithelial tissue" EXACT [OBOL:automatic] synonym: "arm middle limb segment epithelium" EXACT [OBOL:automatic] synonym: "arm zeugopod epithelial tissue" EXACT [OBOL:automatic] synonym: "arm zeugopod epithelium" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment epithelial tissue" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment epithelium" EXACT [OBOL:automatic] synonym: "brachial region zeugopod epithelial tissue" EXACT [OBOL:automatic] synonym: "brachial region zeugopod epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of antebrachial region" EXACT [OBOL:automatic] synonym: "epithelial tissue of arm middle limb segment" EXACT [OBOL:automatic] synonym: "epithelial tissue of arm zeugopod" EXACT [OBOL:automatic] synonym: "epithelial tissue of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "epithelial tissue of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "epithelial tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower segment of arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "epithelial tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelial tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "epithelial tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "epithelial tissue of zeugopod of arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "epithelial tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelium of antebrachial region" EXACT [OBOL:automatic] synonym: "epithelium of arm middle limb segment" EXACT [OBOL:automatic] synonym: "epithelium of arm zeugopod" EXACT [OBOL:automatic] synonym: "epithelium of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "epithelium of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "epithelium of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelium of lower arm" EXACT [OBOL:automatic] synonym: "epithelium of lower segment of arm" EXACT [OBOL:automatic] synonym: "epithelium of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "epithelium of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "epithelium of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelium of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "epithelium of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "epithelium of zeugopod of arm" EXACT [OBOL:automatic] synonym: "epithelium of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "epithelium of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb epithelial tissue" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb epithelium" EXACT [OBOL:automatic] synonym: "lower arm epithelial tissue" EXACT [OBOL:automatic] synonym: "lower arm epithelium" EXACT [OBOL:automatic] synonym: "lower segment of arm epithelial tissue" EXACT [OBOL:automatic] synonym: "lower segment of arm epithelium" EXACT [OBOL:automatic] synonym: "middle limb segment of arm epithelial tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of arm epithelium" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region epithelial tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region epithelium" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment epithelial tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment epithelium" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod epithelial tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod epithelium" EXACT [OBOL:automatic] synonym: "zeugopod of arm epithelial tissue" EXACT [OBOL:automatic] synonym: "zeugopod of arm epithelium" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region epithelial tissue" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region epithelium" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0000554 xref: EHDAA:4174 xref: EHDAA:6220 xref: EMAPA:17418 xref: VHOG:0001096 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003248 name: epithelium of footplate namespace: uberon xref: EHDAA2:0000548 xref: EHDAA:5145 xref: EHDAA:6144 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0003249 name: epithelium of otic placode namespace: uberon def: "An epithelium that is part of a otic placode [Obol]." [OBOL:automatic] comment: editor note - check ZFA, placemeant, appears to refer to both adult structures and primordium synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic] synonym: "otic epithelium" EXACT [UBERON:cjm] synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic] synonym: "otic placode epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001341 xref: EHDAA:510 xref: EMAPA:16197 xref: VHOG:0000636 xref: ZFA:0007068 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0003250 name: rectus capitis lateralis namespace: uberon def: "The Rectus capitis lateralis, a short, flat muscle, arises from the upper surface of the transverse process of the atlas, and is inserted into the under surface of the jugular process of the occipital bone." [Wikipedia:Rectus_capitis_lateralis_muscle] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "lateral rectus capitis" EXACT [FMA:46316] synonym: "rectus capitis lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle] synonym: "rectus capitus lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle] synonym: "rectus capitus lateralis muscle" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle] xref: FMA:46316 xref: SCTID:244841001 is_a: UBERON:0004518 ! muscle of vertebral column [Term] id: UBERON:0003251 name: temporal part of head namespace: uberon synonym: "temporal region" EXACT [FMA:63867] synonym: "temporal region of head" EXACT [FMA:63867] xref: FMA:63867 xref: SCTID:362620003 is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:0003252 name: rib cage namespace: uberon def: "A bony and cartilaginous structure which surrounds the thoracic (chest) cavity and supports the pectoral (shoulder) girdle, forming a core portion of the human skeleton. A typical human rib cage consists of 24 ribs, the sternum, costal cartilages, and the 12 thoracic vertebrae. It, along with the skin and associated fascia and muscles, makes up the thoracic wall, and provides attachments for the muscles of the neck, thorax, upper abdomen, and back. The human rib cage is a component of the human respiratory system. It encloses the thoracic cavity, which contains the lungs. An inhalation is accomplished when the muscular diaphragm, at the floor of the thoracic cavity, contracts and flattens, while contraction of intercostal muscles lift the rib cage up and out. These actions produce an increase in volume, and a resulting partial vacuum, or negative pressure, in the thoracic cavity, resulting in atmospheric pressure pushing air into the lungs, inflating them. An exhalation results when the diaphragm and intercostal muscles relax, and elastic recoil of the rib cage and lungs expels the air." [Wikipedia:Human_rib_cage] comment: todo - add child terms synonym: "cavea thoracis" EXACT [FMA:7480, FMA:TA] synonym: "thoracic cage" EXACT [FMA:7480] xref: FMA:7480 xref: SCTID:361741004 xref: galen:RibCage is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0009568 ! trunk region of vertebral column relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0003253 name: neck of rib namespace: uberon def: "The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs." [Wikipedia:Neck_of_rib] synonym: "collum costae" EXACT [Wikipedia:Neck_of_rib] synonym: "rib neck" EXACT [FMA:7576] xref: FMA:7576 xref: SCTID:263359009 is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003254 name: amniotic ectoderm namespace: uberon comment: Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic diskbthe continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion. synonym: "amnion ectoderm" EXACT [OBOL:automatic] xref: EHDAA2:0000117 xref: EHDAA:138 xref: EMAPA:16110 xref: VHOG:0000621 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003255 name: ectoderm of embryo namespace: uberon is_obsolete: true comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm synonym: "developmental tissue ectoderm" EXACT [OBOL:automatic] synonym: "ectoderm of developmental tissue" EXACT [OBOL:automatic] synonym: "embryo ectoderm" EXACT [OBOL:automatic] xref: EHDAA:132 [Term] id: UBERON:0003256 name: endoderm of embryo namespace: uberon is_obsolete: true comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm synonym: "developmental tissue endoderm" EXACT [OBOL:automatic] synonym: "embryo endoderm" EXACT [OBOL:automatic] synonym: "endoderm of developmental tissue" EXACT [OBOL:automatic] xref: EHDAA:94 [Term] id: UBERON:0003257 name: yolk sac endoderm namespace: uberon comment: TODO - check xref: EHDAA2:0002215 xref: EHDAA:166 xref: EMAPA:16086 xref: VHOG:0000626 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0003258 name: endoderm of foregut namespace: uberon def: "An endoderm that is part of a foregut [Obol]." [OBOL:automatic] comment: TODO - check synonym: "foregut endoderm" EXACT [OBOL:automatic] xref: EHDAA2:0000566 xref: EHDAA:524 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000925 ! endoderm [Term] id: UBERON:0003259 name: endoderm of midgut namespace: uberon def: "An endoderm that is part of a midgut [Obol]." [OBOL:automatic] comment: TODO - check synonym: "midgut endoderm" EXACT [OBOL:automatic] xref: EHDAA:987 xref: EMAPA:16257 xref: RETIRED_EHDAA2:0001194 xref: VHOG:0001080 is_a: UBERON:0000925 ! endoderm is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0003260 name: endoderm of hindgut namespace: uberon def: "An endoderm that is part of a hindgut [Obol]." [OBOL:automatic] comment: TODO - check synonym: "hindgut endoderm" EXACT [OBOL:automatic] xref: EHDAA:979 xref: RETIRED_EHDAA2:0000781 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000925 ! endoderm [Term] id: UBERON:0003261 name: thyroid primordium endoderm namespace: uberon alt_id: UBERON:0005235 synonym: "endoderm of thyroid primordium" EXACT [OBOL:automatic] xref: EHDAA:956 xref: EMAPA:16560 xref: EMAPA:25357 xref: RETIRED_EHDAA2:0002035 xref: VHOG:0001089 is_a: UBERON:0000925 ! endoderm is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0003262 name: amniotic mesoderm namespace: uberon comment: Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic diskbthe continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion. synonym: "amnion mesoderm" EXACT [OBOL:automatic] xref: EHDAA2:0000118 xref: EHDAA:140 xref: EMAPA:16111 xref: VHOG:0000622 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003264 name: mesoderm of yolk sac namespace: uberon def: "A mesoderm that is part of a yolk sac [Obol]." [OBOL:automatic] comment: TODO - check synonym: "yolk sac mesoderm" EXACT [OBOL:automatic] xref: EHDAA:168 xref: EMAPA:16087 xref: VHOG:0000617 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000926 ! mesoderm [Term] id: UBERON:0003265 name: chorionic mesoderm namespace: uberon comment: TODO - check synonym: "chorion mesoderm" EXACT [RETIRED_EHDAA2:0000247] xref: EHDAA:154 xref: EMAPA:16114 xref: RETIRED_EHDAA2:0000247 xref: VHOG:0000620 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003266 name: nerve of central nervous system namespace: uberon is_obsolete: true comment: obsoleted pending formal definition of nerve, with explicit reference to PNS vs CNS xref: EHDAA:2851 xref: EMAPA:17263 [Term] id: UBERON:0003267 name: tooth of upper jaw namespace: uberon def: "A calcareous tooth that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "calcareous tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "calcareous tooth of upper jaw" EXACT [OBOL:automatic] synonym: "dentine containing tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "dentine containing tooth of upper jaw" EXACT [OBOL:automatic] synonym: "palatoquadrate arch calcareous tooth" EXACT [OBOL:automatic] synonym: "palatoquadrate arch dentine containing tooth" EXACT [OBOL:automatic] synonym: "palatoquadrate arch tooth" EXACT [OBOL:automatic] synonym: "palatoquadrate arch vertebrate tooth" EXACT [OBOL:automatic] synonym: "tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "upper jaw calcareous tooth" EXACT [OBOL:automatic] synonym: "upper jaw dentine containing tooth" EXACT [OBOL:automatic] synonym: "upper jaw tooth" EXACT [OBOL:automatic] synonym: "upper jaw vertebrate tooth" EXACT [OBOL:automatic] synonym: "vertebrate tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "vertebrate tooth of upper jaw" EXACT [OBOL:automatic] xref: EHDAA2:0002129 xref: EHDAA:8045 xref: EMAPA:17938 xref: MA:0001909 xref: ncithesaurus:Upper_Jaw_Tooth is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0009680 ! set of upper jaw teeth [Term] id: UBERON:0003268 name: tooth of lower jaw namespace: uberon def: "A calcareous tooth that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic] synonym: "calcareous tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "dentine containing tooth of lower jaw" EXACT [OBOL:automatic] synonym: "dentine containing tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic] synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic] synonym: "lower jaw tooth" EXACT [OBOL:automatic] synonym: "lower jaw vertebrate tooth" EXACT [OBOL:automatic] synonym: "tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch calcareous tooth" EXACT [OBOL:automatic] synonym: "ventral mandibular arch dentine containing tooth" EXACT [OBOL:automatic] synonym: "ventral mandibular arch tooth" EXACT [OBOL:automatic] synonym: "ventral mandibular arch vertebrate tooth" EXACT [OBOL:automatic] synonym: "vertebrate tooth of lower jaw" EXACT [OBOL:automatic] synonym: "vertebrate tooth of ventral mandibular arch" EXACT [OBOL:automatic] xref: EHDAA2:0001029 xref: EHDAA:8009 xref: EMAPA:17917 xref: MA:0001907 xref: ncithesaurus:Lower_Jaw_Tooth is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0009679 ! set of lower jaw teeth [Term] id: UBERON:0003269 name: skeletal muscle of eye namespace: uberon def: "A portion of skeletal muscle tissue that is part of a eye [Obol]." [OBOL:automatic] synonym: "eye skeletal muscle" EXACT [OBOL:automatic] synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic] xref: EHDAA2:0000486 xref: EHDAA:2923 xref: EMAPA:17844 is_a: UBERON:0003899 ! skeletal muscle of head is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003270 name: skeletal muscle of leg namespace: uberon def: "A portion of skeletal muscle tissue that is part of a tetrapod leg [Obol]." [OBOL:automatic] synonym: "leg skeletal muscle" EXACT [OBOL:automatic] synonym: "leg skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of leg" EXACT [OBOL:automatic] xref: EHDAA:8291 xref: EMAPA:19144 xref: EMAPA:19318 xref: RETIRED_EHDAA2:0000974 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0003271 name: skeletal muscle of pelvic girdle namespace: uberon def: "A portion of skeletal muscle tissue that is part of a pelvic girdle [Obol]." [OBOL:automatic] synonym: "girdle-pelvic skeletal muscle" EXACT [OBOL:automatic] synonym: "girdle-pelvic skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "pelvic girdle bone skeletal muscle" EXACT [OBOL:automatic] synonym: "pelvic girdle bone skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "pelvic girdle skeletal muscle" EXACT [OBOL:automatic] synonym: "pelvic girdle skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of girdle-pelvic" EXACT [OBOL:automatic] synonym: "skeletal muscle of pelvic girdle bone" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of girdle-pelvic" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pelvic girdle" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pelvic girdle bone" EXACT [OBOL:automatic] xref: EHDAA:8326 xref: EMAPA:18185 xref: RETIRED_EHDAA2:0001430 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0003272 name: skeletal muscle of arm namespace: uberon def: "A portion of skeletal muscle tissue that is part of an arm [Obol]." [OBOL:automatic] synonym: "arm skeletal muscle" EXACT [OBOL:automatic] synonym: "arm skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "brachial region skeletal muscle" EXACT [OBOL:automatic] synonym: "brachial region skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb skeletal muscle" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of brachial region" EXACT [OBOL:automatic] synonym: "skeletal muscle of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of arm" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of brachial region" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: EHDAA:8277 xref: EMAPA:19107 xref: RETIRED_EHDAA2:0000142 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0003273 name: skeletal muscle of tongue namespace: uberon def: "A portion of skeletal muscle tissue that is part of a tongue [Obol]." [OBOL:automatic] synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic] synonym: "tongue skeletal muscle" EXACT [OBOL:automatic] synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic] xref: EHDAA2:0002065 xref: EHDAA:9146 xref: EMAPA:17883 xref: EMAPA:18879 xref: MA:0001596 xref: VHOG:0001390 xref: ncithesaurus:Tongue_Skeletal_Muscle_Tissue is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003899 ! skeletal muscle of head relationship: part_of UBERON:0000378 ! tongue muscle [Term] id: UBERON:0003274 name: mesothelium of omental bursa namespace: uberon def: "A mesothelium that is part of a lesser sac [Obol]." [OBOL:automatic] synonym: "lesser sac meso-epithelium" EXACT [OBOL:automatic] synonym: "lesser sac mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of lesser sac" EXACT [OBOL:automatic] synonym: "meso-epithelium of omental bursa" EXACT [OBOL:automatic] synonym: "mesothelium of lesser sac" EXACT [OBOL:automatic] synonym: "omental bursa meso-epithelium" EXACT [OBOL:automatic] synonym: "omental bursa mesothelium" EXACT [OBOL:automatic] xref: EHDAA2:0004557 xref: EHDAA:2339 xref: EMAPA:16890 xref: EMAPA:18459 xref: RETIRED_EHDAA2:0001299 xref: VHOG:0000441 is_a: UBERON:0005669 ! peritoneal cavity mesothelium [Term] id: UBERON:0003276 name: skeleton of embryo namespace: uberon def: "A skeletal system that is part of a embryo [Obol]." [OBOL:automatic] synonym: "developmental tissue set of all bones" EXACT [OBOL:automatic] synonym: "developmental tissue set of bones of body" EXACT [OBOL:automatic] synonym: "developmental tissue skeletal system" EXACT [OBOL:automatic] synonym: "developmental tissue skeleton" EXACT [OBOL:automatic] synonym: "developmental tissue skeleton system" EXACT [OBOL:automatic] synonym: "embryo set of all bones" EXACT [OBOL:automatic] synonym: "embryo set of bones of body" EXACT [OBOL:automatic] synonym: "embryo skeletal system" EXACT [OBOL:automatic] synonym: "embryo skeleton" EXACT [OBOL:automatic] synonym: "embryo skeleton system" EXACT [OBOL:automatic] synonym: "set of all bones of developmental tissue" EXACT [OBOL:automatic] synonym: "set of all bones of embryo" EXACT [OBOL:automatic] synonym: "set of bones of body of developmental tissue" EXACT [OBOL:automatic] synonym: "set of bones of body of embryo" EXACT [OBOL:automatic] synonym: "skeletal system of developmental tissue" EXACT [OBOL:automatic] synonym: "skeletal system of embryo" EXACT [OBOL:automatic] synonym: "skeleton of developmental tissue" EXACT [OBOL:automatic] synonym: "skeleton system of developmental tissue" EXACT [OBOL:automatic] synonym: "skeleton system of embryo" EXACT [OBOL:automatic] xref: EHDAA:5047 xref: EMAPA:17213 is_a: UBERON:0001434 ! skeletal system is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0003277 name: skeleton of upper jaw namespace: uberon def: "A subdivision of skeletal system that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of upper jaw" EXACT [OBOL:automatic] synonym: "upper jaw subdivision of skeleton" EXACT [OBOL:automatic] xref: AAO:0000622 xref: EHDAA2:0002128 xref: EHDAA:8041 xref: EMAPA:17927 xref: VHOG:0000429 is_a: UBERON:0000075 ! subdivision of skeletal system [Term] id: UBERON:0003278 name: skeleton of lower jaw namespace: uberon def: "A subdivision of skeletal system that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "lower jaw subdivision of skeleton" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower jaw" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch subdivision of skeleton" EXACT [OBOL:automatic] xref: AAO:0000274 xref: EHDAA2:0004606 xref: EHDAA:8005 xref: EMAPA:17910 xref: VHOG:0000428 is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0003279 name: endothelium of trachea namespace: uberon synonym: "endothelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea endothelium" EXACT [OBOL:automatic] synonym: "windpipe endothelium" EXACT [OBOL:automatic] xref: EHDAA:3082 xref: RETIRED_EHDAA2:0002068 is_a: UBERON:0001901 ! epithelium of trachea is_a: UBERON:0001986 ! endothelium [Term] id: UBERON:0003280 name: endothelium of main bronchus namespace: uberon def: "An endothelium that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "bronchus principalis endothelium" EXACT [OBOL:automatic] synonym: "endothelium of bronchus principalis" EXACT [OBOL:automatic] synonym: "endothelium of primary bronchus" EXACT [OBOL:automatic] synonym: "endothelium of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchus endothelium" EXACT [OBOL:automatic] synonym: "primary bronchus endothelium" EXACT [OBOL:automatic] synonym: "principal bronchus endothelium" EXACT [OBOL:automatic] xref: EHDAA:3076 xref: RETIRED_EHDAA2:0001046 is_a: UBERON:0001986 ! endothelium is_a: UBERON:0002340 ! epithelium of main bronchus [Term] id: UBERON:0003281 name: mesentery of stomach namespace: uberon def: "The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium] comment: todo - check primitive vs developed synonym: "mesentery of ventriculus" EXACT [OBOL:automatic] synonym: "mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium] synonym: "mesogastium" EXACT [MA:0001617] synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] synonym: "stomach mesentery" EXACT [Obol:obol] synonym: "ventriculus mesentery" EXACT [OBOL:automatic] xref: EHDAA2:0001922 xref: EHDAA:2999 xref: EMAPA:17024 xref: EMAPA:18902 xref: MA:0001617 xref: SCTID:261623000 xref: VHOG:0000358 is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0003282 name: mesentery of heart namespace: uberon def: "A mesentery that is part of a heart [Obol]." [OBOL:automatic] synonym: "heart mesentery" EXACT [OBOL:automatic] xref: EHDAA:432 xref: EMAPA:16212 xref: RETIRED_EHDAA2:0000739 xref: VHOG:0000353 is_a: UBERON:0002095 ! mesentery is_a: UBERON:0005983 ! heart layer [Term] id: UBERON:0003283 name: mesentery of oesophagus namespace: uberon def: "A mesentery that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "esophagus mesentery" EXACT [OBOL:automatic] synonym: "gullet mesentery" EXACT [OBOL:automatic] synonym: "mesentery of esophagus" EXACT [OBOL:automatic] synonym: "mesentery of gullet" EXACT [OBOL:automatic] synonym: "oesophagus mesentery" EXACT [OBOL:automatic] xref: EHDAA2:0001288 xref: EHDAA:2943 xref: EMAPA:16836 xref: EMAPA:18864 xref: MA:0001569 xref: VHOG:0000415 is_a: UBERON:0001975 ! serosa of esophagus is_a: UBERON:0002095 ! mesentery is_a: UBERON:0004854 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! gastrointestinal system mesentery [Term] id: UBERON:0003284 name: mesentery of midgut namespace: uberon def: "A mesentery that is part of a midgut [Obol]." [OBOL:automatic] synonym: "midgut mesentery" EXACT [OBOL:automatic] xref: EHDAA2:0001202 xref: EHDAA:3031 xref: EMAPA:16721 xref: EMAPA:17039 xref: EMAPA:17045 xref: EMAPA:17197 xref: VHOG:0000413 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! mesentery [Term] id: UBERON:0003285 name: limb of embryo namespace: uberon def: "A limb that is part of a embryo [Obol]." [OBOL:automatic] synonym: "developmental tissue limb" EXACT [OBOL:automatic] synonym: "embryo limb" EXACT [OBOL:automatic] synonym: "limb of developmental tissue" EXACT [OBOL:automatic] xref: EHDAA:1697 xref: EMAPA:16405 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002101 ! limb [Term] id: UBERON:0003286 name: duodenum of foregut namespace: uberon def: "A duodenum that is part of a foregut [Obol]." [OBOL:automatic] synonym: "foregut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0000560 xref: EHDAA:3830 xref: EMAPA:17178 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002114 ! duodenum [Term] id: UBERON:0003287 name: duodenum of midgut namespace: uberon def: "A duodenum that is part of a midgut [Obol]." [OBOL:automatic] synonym: "midgut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0001189 xref: EHDAA:3937 xref: EMAPA:17193 is_a: UBERON:0002114 ! duodenum [Term] id: UBERON:0003288 name: meninx of midbrain namespace: uberon def: "A meninx that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "meninges of midbrain" EXACT PLURAL [OBOL:automatic] synonym: "midbrain meninges" EXACT PLURAL [OBOL:automatic] synonym: "midbrain meninx" EXACT [OBOL:automatic] xref: EHDAA2:0001174 xref: EHDAA:3708 xref: EMAPA:17791 xref: MA:0001058 xref: RETIRED_EHDAA2:0001109 xref: VHOG:0000012 is_a: UBERON:0002950 ! regional part of midbrain is_a: UBERON:0003547 ! brain meninx [Term] id: UBERON:0003289 name: meninx of telencephalon namespace: uberon def: "A meninx that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "meninges of telencephalon" EXACT PLURAL [OBOL:automatic] synonym: "telencephalon meninges" EXACT PLURAL [OBOL:automatic] synonym: "telencephalon meninx" EXACT [OBOL:automatic] xref: EHDAA2:0001990 xref: EHDAA:5476 xref: EMAPA:17774 xref: MA:0000979 xref: VHOG:0000010 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003548 ! forebrain meninges [Term] id: UBERON:0003290 name: meninx of diencephalon namespace: uberon def: "A meninx that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain meninges" EXACT [OBOL:automatic] synonym: "between brain meninx" EXACT [OBOL:automatic] synonym: "diencephalon meninges" EXACT [OBOL:automatic] synonym: "diencephalon meninx" EXACT [OBOL:automatic] synonym: "interbrain meninges" EXACT [OBOL:automatic] synonym: "interbrain meninx" EXACT [OBOL:automatic] synonym: "mature diencephalon meninges" EXACT [OBOL:automatic] synonym: "mature diencephalon meninx" EXACT [OBOL:automatic] synonym: "meninges of between brain" EXACT [OBOL:automatic] synonym: "meninges of diencephalon" EXACT [OBOL:automatic] synonym: "meninges of interbrain" EXACT [OBOL:automatic] synonym: "meninges of mature diencephalon" EXACT [OBOL:automatic] synonym: "meninx of between brain" EXACT [OBOL:automatic] synonym: "meninx of interbrain" EXACT [OBOL:automatic] synonym: "meninx of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0000399 xref: EHDAA:5458 xref: EMAPA:17764 xref: MA:0000826 xref: VHOG:0000009 is_a: UBERON:0002784 ! regional part of diencephalon is_a: UBERON:0003548 ! forebrain meninges [Term] id: UBERON:0003291 name: meninx of hindbrain namespace: uberon def: "A meninx that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "hindbrain meninges" EXACT [OBOL:automatic] synonym: "hindbrain meninx" EXACT [OBOL:automatic] synonym: "meninges of hindbrain" EXACT [OBOL:automatic] xref: EHDAA2:0000770 xref: EHDAA:3688 xref: EMAPA:17783 xref: MA:0000987 xref: VHOG:0000011 is_a: UBERON:0003547 ! brain meninx is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003292 name: meninx of spinal cord namespace: uberon def: "A meninx that is part of a spinal cord [Obol]." [OBOL:automatic] synonym: "menines of spinal cord" EXACT PLURAL [] synonym: "meninges of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord meninges" EXACT [OBOL:automatic] synonym: "spinal cord meninx" EXACT [OBOL:automatic] synonym: "spinal meninges" EXACT PLURAL [] synonym: "spinal meninx" EXACT [] xref: EHDAA2:0001895 xref: EHDAA:2865 xref: EMAPA:17804 xref: MA:0001130 xref: SCTID:181097002 xref: VHOG:0000443 xref: ncithesaurus:Spinal_Meninges is_a: UBERON:0002360 ! meninx is_a: UBERON:0005174 ! back organ [Term] id: UBERON:0003293 name: gland of oral region namespace: uberon def: "A gland that is part of a oral opening [Obol]." [OBOL:automatic] synonym: "gland of oral opening" EXACT [OBOL:automatic] synonym: "gland of oral part of face" EXACT [OBOL:automatic] synonym: "gland of subdivision of mouth" EXACT [OBOL:automatic] synonym: "oral opening gland" EXACT [OBOL:automatic] synonym: "oral part of face gland" EXACT [OBOL:automatic] synonym: "oral region gland" EXACT [OBOL:automatic] synonym: "subdivision of mouth gland" EXACT [OBOL:automatic] xref: EHDAA2:0001327 xref: EHDAA:2181 xref: EMAPA:16572 xref: EMAPA:16723 xref: VHOG:0000652 is_a: UBERON:0010047 ! oral gland [Term] id: UBERON:0003294 name: gland of foregut namespace: uberon def: "A gland that is part of a foregut [Obol]." [OBOL:automatic] synonym: "foregut gland" EXACT [OBOL:automatic] xref: EHDAA2:0000567 xref: EHDAA:950 xref: EMAPA:16557 xref: VHOG:0000650 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003408 ! gland of gut [Term] id: UBERON:0003295 name: pharyngeal gland namespace: uberon def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [Biology-Online_Dictionary:http://www.biology-online.org/dictionary/] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "glandulae pharyngeae" RELATED [BTO:0004849] synonym: "pharynx gland" EXACT [EHDAA2:0001461] xref: BTO:0004849 xref: EHDAA2:0001461 xref: EHDAA:2967 xref: FMA:55075 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003408 ! gland of gut relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0003296 name: gland of diencephalon namespace: uberon def: "A gland that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain gland" EXACT [OBOL:automatic] synonym: "diencephalon gland" EXACT [OBOL:automatic] synonym: "gland of between brain" EXACT [OBOL:automatic] synonym: "gland of interbrain" EXACT [OBOL:automatic] synonym: "gland of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain gland" EXACT [OBOL:automatic] synonym: "mature diencephalon gland" EXACT [OBOL:automatic] xref: EHDAA2:0000395 xref: EHDAA:4475 xref: EMAPA:16646 xref: EMAPA:16897 xref: VHOG:0000653 is_a: UBERON:0002530 ! gland is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003297 name: gland of integumental system namespace: uberon def: "A gland that is part of a integumental system [Obol]." [OBOL:automatic] synonym: "integumental system gland" EXACT [OBOL:automatic] xref: EHDAA2:0000837 xref: EHDAA:6522 xref: EMAPA:17758 xref: MA:0000144 xref: VHOG:0000654 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0003298 name: roof plate of neural tube namespace: uberon def: "A roof plate that is part of a neural tube [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "neural tube roof plate" EXACT [OBOL:automatic] synonym: "neural tube roofplate" EXACT [OBOL:automatic] synonym: "roof plate neural tube region" EXACT [ZFA:0001436] synonym: "roofplate of neural tube" EXACT [OBOL:automatic] xref: EHDAA2:0001270 xref: EHDAA:2891 xref: EHDAA:916 xref: EMAPA:16168 xref: EMAPA:16535 xref: VHOG:0000303 xref: ZFA:0001436 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0003299 name: roof plate of midbrain namespace: uberon def: "A roof plate that is part of a midbrain [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "midbrain roof plate" EXACT [OBOL:automatic] synonym: "midbrain roofplate" EXACT [OBOL:automatic] synonym: "roof plate midbrain region" EXACT [ZFA:0000355] synonym: "roofplate of midbrain" EXACT [OBOL:automatic] xref: EHDAA2:0001177 xref: EHDAA:3712 xref: EMAPA:16981 xref: RETIRED_EHDAA2:0001111 xref: VHOG:0000772 xref: ZFA:0000355 is_a: UBERON:0003298 ! roof plate of neural tube [Term] id: UBERON:0003300 name: roof plate of telencephalon namespace: uberon def: "A roof plate that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "roofplate of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon roof plate" EXACT [OBOL:automatic] synonym: "telencephalon roofplate" EXACT [OBOL:automatic] xref: EHDAA2:0001994 xref: EHDAA:3512 xref: EMAPA:16657 xref: VHOG:0000774 is_a: UBERON:0003298 ! roof plate of neural tube [Term] id: UBERON:0003301 name: roof plate of diencephalon namespace: uberon def: "A roof plate that is part of a diencephalon [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "between brain roof plate" EXACT [OBOL:automatic] synonym: "between brain roofplate" EXACT [OBOL:automatic] synonym: "diencephalon roof plate" EXACT [OBOL:automatic] synonym: "diencephalon roofplate" EXACT [OBOL:automatic] synonym: "interbrain roof plate" EXACT [OBOL:automatic] synonym: "interbrain roofplate" EXACT [OBOL:automatic] synonym: "mature diencephalon roof plate" EXACT [OBOL:automatic] synonym: "mature diencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate diencephalic region" EXACT [ZFA:0001358] synonym: "roof plate of between brain" EXACT [OBOL:automatic] synonym: "roof plate of interbrain" EXACT [OBOL:automatic] synonym: "roof plate of mature diencephalon" EXACT [OBOL:automatic] synonym: "roofplate of between brain" EXACT [OBOL:automatic] synonym: "roofplate of diencephalon" EXACT [OBOL:automatic] synonym: "roofplate of interbrain" EXACT [OBOL:automatic] synonym: "roofplate of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0000402 xref: EHDAA:1979 xref: EHDAA:2657 xref: EHDAA:3494 xref: EMAPA:16651 xref: EMAPA:16909 xref: VHOG:0000771 xref: ZFA:0001358 is_a: UBERON:0003298 ! roof plate of neural tube [Term] id: UBERON:0003302 name: roof plate of metencephalon namespace: uberon def: "A roof plate that is part of a metencephalon [Obol]." [OBOL:automatic] synonym: "epencephalon-2 roof plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 roofplate" EXACT [OBOL:automatic] synonym: "metencephalon roof plate" EXACT [OBOL:automatic] synonym: "metencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate of epencephalon-2" EXACT [OBOL:automatic] synonym: "roofplate of epencephalon-2" EXACT [OBOL:automatic] synonym: "roofplate of metencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0001160 xref: EHDAA:5524 xref: EMAPA:17098 xref: EMAPA:17105 xref: VHOG:0000770 is_a: UBERON:0002680 ! regional part of metencephalon is_a: UBERON:0003298 ! roof plate of neural tube [Term] id: UBERON:0003303 name: roof plate of medulla oblongata namespace: uberon def: "A roof plate that is part of a medulla oblongata [Obol]." [OBOL:automatic] synonym: "bulb roof plate" EXACT [OBOL:automatic] synonym: "bulb roofplate" EXACT [OBOL:automatic] synonym: "medulla oblongata roof plate" EXACT [OBOL:automatic] synonym: "medulla oblongata roofplate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata roof plate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata roofplate" EXACT [OBOL:automatic] synonym: "metepencephalon roof plate" EXACT [OBOL:automatic] synonym: "metepencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate of bulb" EXACT [OBOL:automatic] synonym: "roof plate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "roof plate of metepencephalon" EXACT [OBOL:automatic] synonym: "roofplate of bulb" EXACT [OBOL:automatic] synonym: "roofplate of medulla oblongata" EXACT [OBOL:automatic] synonym: "roofplate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0001099 xref: EHDAA:7614 xref: VHOG:0000776 is_a: UBERON:0003298 ! roof plate of neural tube [Term] id: UBERON:0003304 name: blood island of mesoderm namespace: uberon def: "A blood island that is part of a mesoderm [Obol]." [OBOL:automatic] synonym: "mesoderm blood island" EXACT [OBOL:automatic] xref: EHDAA2:0003241 xref: EHDAA:170 xref: EMAPA:16115 is_a: UBERON:0003061 ! blood island [Term] id: UBERON:0003305 name: blood island of mesenchyme namespace: uberon def: "A blood island that is part of a mesenchyme [Obol]." [OBOL:automatic] synonym: "mesenchyme blood island" EXACT [OBOL:automatic] xref: EHDAA:207 xref: EMAPA:16268 is_a: UBERON:0003061 ! blood island [Term] id: UBERON:0003306 name: floor plate of neural tube namespace: uberon def: "A floor plate that is part of a neural tube [Obol]." [OBOL:automatic] comment: Note that although 'floor plate' is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. We introduce this class for the neural tube specific structure subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "floor plate neural tube" EXACT [ZFA:0001434] synonym: "floorplate of neural tube" EXACT [OBOL:automatic] synonym: "neural tube floor plate" EXACT [OBOL:automatic] synonym: "neural tube floorplate" EXACT [OBOL:automatic] xref: EFO:0003688 xref: EHDAA2:0001256 xref: EHDAA:2871 xref: EHDAA:910 xref: EMAPA:16165 xref: EMAPA:16531 xref: VHOG:0000300 xref: ZFA:0001434 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003307 name: floor plate of midbrain namespace: uberon def: "A floor plate that is part of a midbrain [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "floor plate midbrain region" EXACT [ZFA:0001677] synonym: "floorplate of midbrain" EXACT [OBOL:automatic] synonym: "midbrain floor plate" EXACT [OBOL:automatic] synonym: "midbrain floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0001164 xref: EHDAA:3698 xref: EMAPA:16975 xref: RETIRED_EHDAA2:0001106 xref: VHOG:0000780 xref: ZFA:0001677 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003308 name: floor plate of telencephalon namespace: uberon def: "A floor plate that is part of a telencephalon [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "floor plate telencephalic region" EXACT [ZFA:0000914] synonym: "floorplate of telencephalon" EXACT [OBOL:automatic] synonym: "floorplate telencephalon" EXACT [ZFA:0000914] synonym: "telencephalon floor plate" EXACT [OBOL:automatic] synonym: "telencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0001983 xref: EHDAA:3498 xref: EMAPA:16655 xref: VHOG:0000783 xref: ZFA:0000914 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003309 name: floor plate of diencephalon namespace: uberon def: "A floor plate that is part of a diencephalon [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "between brain floor plate" EXACT [OBOL:automatic] synonym: "between brain floorplate" EXACT [OBOL:automatic] synonym: "diencephalon floor plate" EXACT [OBOL:automatic] synonym: "diencephalon floorplate" EXACT [OBOL:automatic] synonym: "floor plate diencephalic region" EXACT [ZFA:0000871] synonym: "floor plate of between brain" EXACT [OBOL:automatic] synonym: "floor plate of interbrain" EXACT [OBOL:automatic] synonym: "floor plate of mature diencephalon" EXACT [OBOL:automatic] synonym: "floorplate diencephalon" EXACT [ZFA:0000871] synonym: "floorplate of between brain" EXACT [OBOL:automatic] synonym: "floorplate of diencephalon" EXACT [OBOL:automatic] synonym: "floorplate of interbrain" EXACT [OBOL:automatic] synonym: "floorplate of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain floor plate" EXACT [OBOL:automatic] synonym: "interbrain floorplate" EXACT [OBOL:automatic] synonym: "mature diencephalon floor plate" EXACT [OBOL:automatic] synonym: "mature diencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0000388 xref: EHDAA:1975 xref: EHDAA:2651 xref: EHDAA:3480 xref: EMAPA:16645 xref: EMAPA:16903 xref: VHOG:0000782 xref: ZFA:0000871 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003310 name: floor plate of metencephalon namespace: uberon def: "A floor plate that is part of a metencephalon [Obol]." [OBOL:automatic] synonym: "epencephalon-2 floor plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 floorplate" EXACT [OBOL:automatic] synonym: "floor plate of epencephalon-2" EXACT [OBOL:automatic] synonym: "floorplate of epencephalon-2" EXACT [OBOL:automatic] synonym: "floorplate of metencephalon" EXACT [OBOL:automatic] synonym: "metencephalon floor plate" EXACT [OBOL:automatic] synonym: "metencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0001158 xref: EHDAA:5500 xref: EMAPA:17093 xref: EMAPA:17100 xref: EMAPA:17258 xref: VHOG:0000784 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002680 ! regional part of metencephalon is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003311 name: floor plate of medulla oblongata namespace: uberon def: "A floor plate that is part of a medulla oblongata [Obol]." [OBOL:automatic] synonym: "bulb floor plate" EXACT [OBOL:automatic] synonym: "bulb floorplate" EXACT [OBOL:automatic] synonym: "floor plate of bulb" EXACT [OBOL:automatic] synonym: "floor plate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "floor plate of metepencephalon" EXACT [OBOL:automatic] synonym: "floorplate of bulb" EXACT [OBOL:automatic] synonym: "floorplate of medulla oblongata" EXACT [OBOL:automatic] synonym: "floorplate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "floorplate of metepencephalon" EXACT [OBOL:automatic] synonym: "medulla oblongata floor plate" EXACT [OBOL:automatic] synonym: "medulla oblongata floorplate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata floor plate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata floorplate" EXACT [OBOL:automatic] synonym: "metepencephalon floor plate" EXACT [OBOL:automatic] synonym: "metepencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA2:0001097 xref: EHDAA:7590 xref: EMAPA:17551 xref: VHOG:0000786 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003312 name: mesenchyme of testis namespace: uberon def: "A mesenchyme that is part of a testis [Obol]." [OBOL:automatic] synonym: "testis mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0002010 xref: EHDAA:8150 xref: VHOG:0001442 is_a: UBERON:0003855 ! gonad mesenchyme [Term] id: UBERON:0003314 name: eye mesenchyme namespace: uberon comment: todo - change mesenchyme relationships to precursor_of synonym: "mesenchyme of eye" EXACT [OBOL:automatic] xref: EHDAA2:0000485 xref: EHDAA:2910 xref: EMAPA:16324 xref: EMAPA:16673 xref: EMAPA:17833 xref: EMAPA:17836 xref: VHOG:0001084 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003315 name: mesenchyme of ovary namespace: uberon def: "A mesenchyme that is part of a ovary [Obol]." [OBOL:automatic] synonym: "female reproductive system gonad mesenchyme" EXACT [OBOL:automatic] synonym: "female reproductive system gonada mesenchyme" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system mesenchyme" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of female reproductive system gonad" EXACT [OBOL:automatic] synonym: "mesenchyme of female reproductive system gonada" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "mesenchyme of gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "ovary mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0001362 xref: EHDAA:8128 xref: VHOG:0001441 is_a: UBERON:0003855 ! gonad mesenchyme [Term] id: UBERON:0003316 name: mesenchyme of yolk sac namespace: uberon def: "A mesenchyme that is part of a yolk sac [Obol]." [OBOL:automatic] synonym: "yolk sac mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0002216 xref: EHDAA:205 xref: EMAPA:16267 xref: VHOG:0000503 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003317 name: mesenchyme of incisor namespace: uberon def: "A mesenchyme that is part of a incisor tooth [Obol]." [OBOL:automatic] synonym: "incisor mesenchyme" EXACT [OBOL:automatic] synonym: "incisor tooth mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of incisor tooth" EXACT [OBOL:automatic] xref: EHDAA:8015 xref: EHDAA:8051 xref: EMAPA:17920 xref: EMAPA:17941 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003318 name: mesenchyme of elbow namespace: uberon def: "A mesenchyme that is part of a elbow [Obol]." [OBOL:automatic] synonym: "cubital region mesenchyme" EXACT [OBOL:automatic] synonym: "elbow mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of cubital region" EXACT [OBOL:automatic] xref: EHDAA2:0000432 xref: EHDAA:4170 xref: EHDAA:6216 xref: EMAPA:17416 xref: VHOG:0001075 is_a: UBERON:0003859 ! forelimb mesenchyme [Term] id: UBERON:0003319 name: mesenchyme of carpal region namespace: uberon def: "A mesenchyme that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of wrist" EXACT [OBOL:automatic] synonym: "wrist mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0000220 xref: EHDAA:5200 is_a: UBERON:0003859 ! forelimb mesenchyme [Term] id: UBERON:0003320 name: mesenchyme of hip namespace: uberon def: "A mesenchyme that is part of a hip [Obol]." [OBOL:automatic] synonym: "hip mesenchyme" EXACT [OBOL:automatic] synonym: "hip region mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of hip region" EXACT [OBOL:automatic] synonym: "mesenchyme of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0000786 xref: EHDAA:5157 xref: EHDAA:6182 xref: EMAPA:17492 xref: VHOG:0001029 is_a: UBERON:0009749 ! limb mesenchyme [Term] id: UBERON:0003321 name: mesenchyme of knee namespace: uberon def: "A mesenchyme that is part of a knee [Obol]." [OBOL:automatic] synonym: "knee mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0000898 xref: EHDAA:5163 xref: EHDAA:6188 xref: EMAPA:17495 xref: VHOG:0001070 is_a: UBERON:0003860 ! hindlimb mesenchyme [Term] id: UBERON:0003322 name: mesenchyme of shoulder namespace: uberon def: "A mesenchyme that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "shoulder mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0001837 xref: EHDAA:4184 xref: EHDAA:6232 xref: EMAPA:17423 xref: VHOG:0001035 is_a: UBERON:0003859 ! forelimb mesenchyme [Term] id: UBERON:0003323 name: mesenchyme of upper jaw namespace: uberon def: "A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "palatoquadrate arch mesenchyme" EXACT [OBOL:automatic] synonym: "upper jaw mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0002124 xref: EHDAA:8031 xref: EMAPA:17929 xref: VHOG:0001099 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003324 name: mesenchyme of lower jaw namespace: uberon def: "A mesenchyme that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0001024 xref: EHDAA:8003 xref: EMAPA:17916 xref: VHOG:0001069 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003325 name: mesenchyme of pinna namespace: uberon def: "A mesenchyme that is part of a pinna [Obol]." [OBOL:automatic] synonym: "auricle mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic] synonym: "auricula (auris externa) mesenchyme" EXACT [OBOL:automatic] synonym: "auricula mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle of ear" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle of external ear" EXACT [OBOL:automatic] synonym: "mesenchyme of auricula" EXACT [OBOL:automatic] synonym: "mesenchyme of auricula (auris externa)" EXACT [OBOL:automatic] synonym: "mesenchyme of pinna of ear" EXACT [OBOL:automatic] synonym: "pinna mesenchyme" EXACT [OBOL:automatic] synonym: "pinna of ear mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0001469 xref: EHDAA:8981 xref: EMAPA:17591 xref: VHOG:0000747 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003326 name: mesenchyme of mammary gland namespace: uberon synonym: "lactiferous gland mesenchyme" EXACT [OBOL:automatic] synonym: "lobe of breast mesenchyme" EXACT [OBOL:automatic] synonym: "lobe of mammary gland mesenchyme" EXACT [OBOL:automatic] synonym: "mammary gland mesenchyme" EXACT [OBOL:automatic] synonym: "mammary mesenchyme" EXACT [] synonym: "mesenchyme of lactiferous gland" EXACT [OBOL:automatic] synonym: "mesenchyme of lobe of breast" EXACT [OBOL:automatic] synonym: "mesenchyme of lobe of mammary gland" EXACT [OBOL:automatic] xref: EHDAA2:0001058 xref: EHDAA:6528 xref: EMAPA:17761 xref: VHOG:0001087 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003327 name: mesenchyme of forearm namespace: uberon def: "A mesenchyme that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region mesenchyme" EXACT [OBOL:automatic] synonym: "arm middle limb segment mesenchyme" EXACT [OBOL:automatic] synonym: "arm zeugopod mesenchyme" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment mesenchyme" EXACT [OBOL:automatic] synonym: "brachial region zeugopod mesenchyme" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb mesenchyme" EXACT [OBOL:automatic] synonym: "lower arm mesenchyme" EXACT [OBOL:automatic] synonym: "lower segment of arm mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of antebrachial region" EXACT [OBOL:automatic] synonym: "mesenchyme of arm middle limb segment" EXACT [OBOL:automatic] synonym: "mesenchyme of arm zeugopod" EXACT [OBOL:automatic] synonym: "mesenchyme of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "mesenchyme of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "mesenchyme of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "mesenchyme of lower arm" EXACT [OBOL:automatic] synonym: "mesenchyme of lower segment of arm" EXACT [OBOL:automatic] synonym: "mesenchyme of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "mesenchyme of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "mesenchyme of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "mesenchyme of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "mesenchyme of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "mesenchyme of zeugopod of arm" EXACT [OBOL:automatic] synonym: "mesenchyme of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "mesenchyme of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "middle limb segment of arm mesenchyme" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region mesenchyme" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment mesenchyme" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod mesenchyme" EXACT [OBOL:automatic] synonym: "zeugopod of arm mesenchyme" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region mesenchyme" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0000555 xref: EHDAA:4176 xref: EHDAA:6222 xref: EMAPA:17419 xref: VHOG:0000504 is_a: UBERON:0003859 ! forelimb mesenchyme relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0003328 name: mesenchyme of footplate namespace: uberon alt_id: UBERON:0005260 synonym: "foot plate mesenchyme" EXACT [] xref: EHDAA2:0000549 xref: EHDAA:5149 xref: EHDAA:6172 xref: EMAPA:17252 xref: VHOG_RETIRED:0001055 is_a: UBERON:0003412 ! hindlimb bud mesenchyme [Term] id: UBERON:0003329 name: submucosa of anal canal namespace: uberon def: "A submucosa that is part of an anal canal [Obol]." [OBOL:automatic] synonym: "anal canal submucosa" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically submucosa" EXACT [OBOL:automatic] synonym: "anal region submucosa" EXACT [OBOL:automatic] synonym: "anatomical anal canal submucosa" EXACT [OBOL:automatic] synonym: "submucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "submucosa of anal region" EXACT [OBOL:automatic] synonym: "submucosa of anatomical anal canal" EXACT [OBOL:automatic] xref: EMAPA:27535 xref: FMA:85399 xref: SCTID:7892006 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001208 ! submucosa of large intestine [Term] id: UBERON:0003330 name: submucosa of rectum namespace: uberon def: "A submucosa that is part of a rectum [Obol]." [OBOL:automatic] synonym: "rectal submucosa" EXACT [FMA:15034] synonym: "rectum submucosa" EXACT [OBOL:automatic] xref: EMAPA:27083 xref: EMAPA:27323 xref: FMA:15034 xref: SCTID:71683001 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001208 ! submucosa of large intestine [Term] id: UBERON:0003331 name: submucosa of colon namespace: uberon def: "A submucosa that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon submucosa" EXACT [OBOL:automatic] synonym: "colonic submucosa" EXACT [FMA:14985] synonym: "large bowel submucosa" EXACT [OBOL:automatic] synonym: "submucosa of large bowel" EXACT [OBOL:automatic] xref: EMAPA:27379 xref: FMA:14985 xref: SCTID:61647009 is_a: UBERON:0001208 ! submucosa of large intestine [Term] id: UBERON:0003332 name: submucosa of duodenum namespace: uberon def: "A submucosa that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "doudenal submucosa" EXACT [FMA:14943] synonym: "duodenal submucosa" EXACT [FMA:14943] synonym: "duodenum submucosa" EXACT [OBOL:automatic] xref: EMAPA:27239 xref: FMA:14943 xref: SCTID:76519004 is_a: UBERON:0001205 ! submucosa of small intestine [Term] id: UBERON:0003333 name: submucosa of jejunum namespace: uberon def: "A submucosa that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal submucosa" EXACT [FMA:14950] synonym: "jejunum submucosa" EXACT [OBOL:automatic] xref: EMAPA:27111 xref: EMAPA:27351 xref: FMA:14950 xref: SCTID:70192009 is_a: UBERON:0001205 ! submucosa of small intestine [Term] id: UBERON:0003334 name: serosa of rectum namespace: uberon def: "A serous membrane that is part of a rectum [Obol]." [OBOL:automatic] synonym: "rectal serosa" EXACT [FMA:15039] synonym: "rectum serosa" EXACT [OBOL:automatic] synonym: "rectum serous membrane" EXACT [OBOL:automatic] synonym: "serous membrane of rectum" EXACT [OBOL:automatic] synonym: "visceral peritoneum of rectum" EXACT [FMA:15039] xref: EMAPA:27087 xref: EMAPA:27331 xref: FMA:15039 is_a: UBERON:0001209 ! serosa of large intestine [Term] id: UBERON:0003335 name: serosa of colon namespace: uberon def: "A serous membrane that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon serosa" EXACT [OBOL:automatic] synonym: "colon serous membrane" EXACT [OBOL:automatic] synonym: "colonic serosa" EXACT [FMA:14990] synonym: "large bowel serosa" EXACT [OBOL:automatic] synonym: "large bowel serous membrane" EXACT [OBOL:automatic] synonym: "serosa of large bowel" EXACT [OBOL:automatic] synonym: "serous membrane of colon" EXACT [OBOL:automatic] synonym: "serous membrane of large bowel" EXACT [OBOL:automatic] synonym: "visceral peritoneum of colon" EXACT [FMA:14990] xref: EMAPA:27387 xref: FMA:14990 xref: SCTID:90132000 is_a: UBERON:0001209 ! serosa of large intestine [Term] id: UBERON:0003336 name: serosa of duodenum namespace: uberon def: "A serous membrane that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "doudenal serosa" EXACT [FMA:14948] synonym: "duodenal serosa" EXACT [FMA:14948] synonym: "duodenum serosa" EXACT [OBOL:automatic] synonym: "duodenum serous membrane" EXACT [OBOL:automatic] synonym: "serous membrane of duodenum" EXACT [OBOL:automatic] synonym: "visceral peritoneum of duodenum" EXACT [FMA:14948] xref: EMAPA:27247 xref: FMA:14948 xref: SCTID:1236009 is_a: UBERON:0001206 ! serosa of small intestine [Term] id: UBERON:0003337 name: serosa of jejunum namespace: uberon def: "A serous membrane that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal serosa" EXACT [FMA:14955] synonym: "jejunum serosa" EXACT [OBOL:automatic] synonym: "jejunum serous membrane" EXACT [OBOL:automatic] synonym: "serous membrane of jejunum" EXACT [OBOL:automatic] synonym: "visceral peritoneum of jejunum" EXACT [FMA:14955] xref: EMAPA:27115 xref: EMAPA:27359 xref: FMA:14955 is_a: UBERON:0001206 ! serosa of small intestine [Term] id: UBERON:0003338 name: ganglion of peripheral nervous system namespace: uberon def: "A ganglion that is part of a peripheral nervous system [Obol]." [OBOL:automatic] synonym: "peripheral nervous system ganglion" EXACT [OBOL:automatic] xref: BTO:0001123 xref: EMAPA:18371 xref: EV:0100372 xref: MA:0001161 is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0003339 name: ganglion of central nervous system namespace: uberon def: "A ganglion that is part of a central nervous system [Obol]." [OBOL:automatic] comment: this has no subclasses in FMA. In EHDAA2 it has only the cranial ganglia synonym: "central nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion of neuraxis" EXACT [OBOL:automatic] synonym: "neuraxis ganglion" EXACT [OBOL:automatic] xref: EHDAA2:0000227 xref: EMAPA:16658 xref: FMA:83843 is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0003340 name: urethra of urogenital sinus namespace: uberon is_obsolete: true xref: EMAPA:30891 [Term] id: UBERON:0003341 name: urethra of urinary system namespace: uberon is_obsolete: true xref: EMAPA:30901 [Term] id: UBERON:0003342 name: mucosa of anal canal namespace: uberon def: "A mucosa that is part of an anal canal [Obol]." [OBOL:automatic] synonym: "anal canal mucosa" EXACT [OBOL:automatic] synonym: "anal canal mucosa of organ" EXACT [OBOL:automatic] synonym: "anal canal mucous membrane" EXACT [OBOL:automatic] synonym: "anal canal organ mucosa" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically mucosa" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically mucosa of organ" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically mucous membrane" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically organ mucosa" EXACT [OBOL:automatic] synonym: "anal mucosa" EXACT [FMA:74654] synonym: "anal mucous membrane" EXACT [FMA:74654] synonym: "anal region mucosa" EXACT [OBOL:automatic] synonym: "anal region mucosa of organ" EXACT [OBOL:automatic] synonym: "anal region mucous membrane" EXACT [OBOL:automatic] synonym: "anal region organ mucosa" EXACT [OBOL:automatic] synonym: "anatomical anal canal mucosa" EXACT [OBOL:automatic] synonym: "anatomical anal canal mucosa of organ" EXACT [OBOL:automatic] synonym: "anatomical anal canal mucous membrane" EXACT [OBOL:automatic] synonym: "anatomical anal canal organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "mucosa of anal region" EXACT [OBOL:automatic] synonym: "mucosa of anatomical anal canal" EXACT [OBOL:automatic] synonym: "mucosa of organ of anal canal" EXACT [OBOL:automatic] synonym: "mucosa of organ of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "mucosa of organ of anal region" EXACT [OBOL:automatic] synonym: "mucosa of organ of anatomical anal canal" EXACT [OBOL:automatic] synonym: "mucous membrane of anal canal" EXACT [OBOL:automatic] synonym: "mucous membrane of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "mucous membrane of anal region" EXACT [OBOL:automatic] synonym: "mucous membrane of anatomical anal canal" EXACT [OBOL:automatic] synonym: "organ mucosa of anal canal" EXACT [OBOL:automatic] synonym: "organ mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "organ mucosa of anal region" EXACT [OBOL:automatic] synonym: "organ mucosa of anatomical anal canal" EXACT [OBOL:automatic] xref: EMAPA:27531 xref: FMA:74654 xref: SCTID:362170004 xref: ncithesaurus:Anal_Mucosa is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0003343 name: mucosa of oral region namespace: uberon def: "A mucosa that is part of a oral opening [Obol]." [OBOL:automatic] synonym: "mucosa of oral opening" EXACT [OBOL:automatic] synonym: "mucosa of oral part of face" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral opening" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral part of face" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral region" EXACT [OBOL:automatic] synonym: "mucosa of organ of subdivision of mouth" EXACT [OBOL:automatic] synonym: "mucosa of subdivision of mouth" EXACT [OBOL:automatic] synonym: "mucous membrane of oral opening" EXACT [OBOL:automatic] synonym: "mucous membrane of oral part of face" EXACT [OBOL:automatic] synonym: "mucous membrane of oral region" EXACT [OBOL:automatic] synonym: "mucous membrane of subdivision of mouth" EXACT [OBOL:automatic] synonym: "oral opening mucosa" EXACT [OBOL:automatic] synonym: "oral opening mucosa of organ" EXACT [OBOL:automatic] synonym: "oral opening mucous membrane" EXACT [OBOL:automatic] synonym: "oral opening organ mucosa" EXACT [OBOL:automatic] synonym: "oral part of face mucosa" EXACT [OBOL:automatic] synonym: "oral part of face mucosa of organ" EXACT [OBOL:automatic] synonym: "oral part of face mucous membrane" EXACT [OBOL:automatic] synonym: "oral part of face organ mucosa" EXACT [OBOL:automatic] synonym: "oral region mucosa" EXACT [OBOL:automatic] synonym: "oral region mucosa of organ" EXACT [OBOL:automatic] synonym: "oral region mucous membrane" EXACT [OBOL:automatic] synonym: "oral region organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of oral opening" EXACT [OBOL:automatic] synonym: "organ mucosa of oral part of face" EXACT [OBOL:automatic] synonym: "organ mucosa of oral region" EXACT [OBOL:automatic] synonym: "organ mucosa of subdivision of mouth" EXACT [OBOL:automatic] synonym: "subdivision of mouth mucosa" EXACT [OBOL:automatic] synonym: "subdivision of mouth mucosa of organ" EXACT [OBOL:automatic] synonym: "subdivision of mouth mucous membrane" EXACT [OBOL:automatic] synonym: "subdivision of mouth organ mucosa" EXACT [OBOL:automatic] xref: EMAPA:26937 is_a: UBERON:0003729 ! mouth mucosa is_a: UBERON:0004785 ! respiratory system mucosa [Term] id: UBERON:0003346 name: mucosa of rectum namespace: uberon def: "A mucosa that is part of a rectum [Obol]." [OBOL:automatic] synonym: "mucosa of organ of rectum" EXACT [OBOL:automatic] synonym: "mucous membrane of rectum" EXACT [OBOL:automatic] synonym: "organ mucosa of rectum" EXACT [OBOL:automatic] synonym: "rectal mucosa" EXACT [FMA:15033] synonym: "rectal mucous membrane" EXACT [FMA:15033] synonym: "rectum mucosa" EXACT [OBOL:automatic] synonym: "rectum mucosa of organ" EXACT [OBOL:automatic] synonym: "rectum mucous membrane" EXACT [OBOL:automatic] synonym: "rectum organ mucosa" EXACT [OBOL:automatic] xref: EMAPA:27081 xref: EMAPA:27319 xref: FMA:15033 xref: SCTID:362167003 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0003350 name: epithelium of mucosa namespace: uberon def: "An epithelium that is part of a mucosa [Obol]." [OBOL:automatic] synonym: "epithelial tissue of mucosa" EXACT [OBOL:automatic] synonym: "epithelial tissue of mucosa of organ" EXACT [OBOL:automatic] synonym: "epithelial tissue of mucous membrane" EXACT [OBOL:automatic] synonym: "epithelial tissue of organ mucosa" EXACT [OBOL:automatic] synonym: "epithelium of mucosa of organ" EXACT [OBOL:automatic] synonym: "epithelium of mucous membrane" EXACT [OBOL:automatic] synonym: "epithelium of organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa epithelial tissue" EXACT [OBOL:automatic] synonym: "mucosa epithelium" EXACT [OBOL:automatic] synonym: "mucosa of organ epithelial tissue" EXACT [OBOL:automatic] synonym: "mucosa of organ epithelium" EXACT [OBOL:automatic] synonym: "mucous membrane epithelial tissue" EXACT [OBOL:automatic] synonym: "mucous membrane epithelium" EXACT [OBOL:automatic] synonym: "organ mucosa epithelial tissue" EXACT [OBOL:automatic] synonym: "organ mucosa epithelium" EXACT [OBOL:automatic] xref: EMAPA:18668 xref: EMAPA:18835 xref: EMAPA:18857 xref: EMAPA:18862 xref: EMAPA:18868 xref: EMAPA:18893 xref: EMAPA:18899 xref: EMAPA:18912 xref: EMAPA:18917 xref: EMAPA:18927 xref: EMAPA:18934 xref: EMAPA:18941 xref: EMAPA:19078 xref: EMAPA:26961 xref: EMAPA:26985 xref: EMAPA:27019 xref: EMAPA:27033 xref: EMAPA:27047 xref: EMAPA:27061 xref: EMAPA:27075 xref: EMAPA:27089 xref: EMAPA:27103 xref: EMAPA:27131 xref: EMAPA:27145 xref: EMAPA:27159 xref: EMAPA:27175 xref: EMAPA:27191 xref: EMAPA:27207 xref: EMAPA:27219 xref: EMAPA:27229 xref: EMAPA:27307 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0003351 name: pharyngeal epithelium namespace: uberon def: "An epithelium that is part of a pharynx [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of pharynx" EXACT [OBOL:automatic] synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "pharynx epithelium" EXACT [OBOL:automatic] xref: EMAPA:16708 xref: MA:0002725 xref: RETIRED_EHDAA2:0001460 xref: XAO:0003202 xref: ZFA:0001174 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0003352 name: epithelium of midgut namespace: uberon def: "For example the midgut epithelium of Wirenia argentea Odhner Mollusca, Solenogastres) is composed of two cell types: dorsal ciliary cells and digestive cells[BTO]." [BTO:0005053] synonym: "epithelial tissue of midgut" EXACT [OBOL:automatic] synonym: "midgut epithelial tissue" EXACT [OBOL:automatic] synonym: "midgut epithelium" EXACT [BTO:0005053, OBOL:automatic] xref: BTO:0005053 xref: EHDAA2:0001195 xref: EMAPA:16569 is_a: UBERON:0003929 ! gut epithelium relationship: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003353 name: epithelium of hindgut namespace: uberon def: "An epithelium that is part of a hindgut [Obol]." [OBOL:automatic] synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic] synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic] synonym: "hindgut epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0000782 xref: EMAPA:16717 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003929 ! gut epithelium [Term] id: UBERON:0003354 name: epithelium of rectum namespace: uberon def: "An epithelium that is part of a rectum [Obol]." [OBOL:automatic] synonym: "epithelial tissue of rectum" EXACT [OBOL:automatic] synonym: "rectal epithelium" EXACT [FMA:17510] synonym: "rectum epithelial tissue" EXACT [OBOL:automatic] synonym: "rectum epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001594 xref: EMAPA:17898 xref: FMA:17510 xref: VHOG:0001037 xref: WBbt:0005800 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001278 ! epithelium of large intestine [Term] id: UBERON:0003355 name: epithelium of incisor namespace: uberon def: "An epithelium that is part of a incisor tooth [Obol]." [OBOL:automatic] synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic] synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic] synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic] synonym: "incisor epithelial tissue" EXACT [OBOL:automatic] synonym: "incisor epithelium" EXACT [OBOL:automatic] synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic] synonym: "incisor tooth epithelium" EXACT [OBOL:automatic] xref: EMAPA:17919 xref: EMAPA:17940 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004807 ! respiratory system epithelium [Term] id: UBERON:0003356 name: epithelium of nasal septum namespace: uberon def: "An epithelium that is part of a nasal septum [Obol]." [OBOL:automatic] synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal septum epithelium" EXACT [OBOL:automatic] xref: EMAPA:18442 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004807 ! respiratory system epithelium [Term] id: UBERON:0003357 name: epithelium of tongue namespace: uberon def: "An epithelium that is part of a tongue [Obol]." [OBOL:automatic] comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies. synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic] synonym: "lingual epithelium" RELATED [BTO:0000992] synonym: "tongue epithelial tissue" EXACT [OBOL:automatic] synonym: "tongue epithelium" EXACT [OBOL:automatic] xref: BTO:0000992 xref: EHDAA2:0004598 xref: EMAPA:17881 xref: EMAPA:18872 xref: MA:0001592 xref: ncithesaurus:Tongue_Epithelium is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003929 ! gut epithelium [Term] id: UBERON:0003358 name: epithelium of soft palate namespace: uberon def: "An epithelium that is part of a soft palate [Obol]." [OBOL:automatic] synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic] synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic] synonym: "soft palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18950 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003235 ! epithelium of upper jaw is_a: UBERON:0003929 ! gut epithelium [Term] id: UBERON:0003359 name: epithelium of submandibular gland namespace: uberon def: "An epithelium that is part of a submandibular gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of submandibular gland" EXACT [OBOL:automatic] synonym: "submandibular gland duct epithelium" RELATED [BTO:0004557] synonym: "submandibular gland epithelial tissue" EXACT [OBOL:automatic] synonym: "submandibular gland epithelium" EXACT [OBOL:automatic] xref: BTO:0004557 xref: EMAPA:18813 xref: VHOG:0000989 is_a: UBERON:0004809 ! salivary gland epithelium [Term] id: UBERON:0003360 name: epithelium of parotid gland namespace: uberon def: "An epithelium that is part of a parotid gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of parotid gland" EXACT [OBOL:automatic] synonym: "epithelium of parotid" EXACT [OBOL:automatic] synonym: "epithelium of parotid gland" EXACT [OBOL:automatic] synonym: "parotid epithelial tissue" EXACT [OBOL:automatic] synonym: "parotid epithelium" EXACT [OBOL:automatic] synonym: "parotid gland duct epithelium" RELATED [BTO:0004555] synonym: "parotid gland epithelial tissue" EXACT [OBOL:automatic] synonym: "parotid gland epithelium" EXACT [OBOL:automatic] xref: BTO:0004555 xref: EMAPA:18538 xref: VHOG:0001434 is_a: UBERON:0004809 ! salivary gland epithelium [Term] id: UBERON:0003361 name: epithelium of sublingual gland namespace: uberon def: "An epithelium that is part of a sublingual gland [Obol]." [OBOL:automatic] synonym: "Rivinus'gland epithelial tissue" EXACT [OBOL:automatic] synonym: "Rivinus'gland epithelium" EXACT [OBOL:automatic] synonym: "ductus sublingualis epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus sublingualis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of Rivinus'gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus sublingualis" EXACT [OBOL:automatic] synonym: "epithelial tissue of sublingual gland" EXACT [OBOL:automatic] synonym: "epithelium of Rivinus'gland" EXACT [OBOL:automatic] synonym: "epithelium of ductus sublingualis" EXACT [OBOL:automatic] synonym: "sublingual gland duct epithelium" RELATED [BTO:0004559] synonym: "sublingual gland epithelial tissue" EXACT [OBOL:automatic] synonym: "sublingual gland epithelium" EXACT [OBOL:automatic] xref: BTO:0004559 xref: EMAPA:18810 xref: VHOG:0001098 is_a: UBERON:0004809 ! salivary gland epithelium [Term] id: UBERON:0003362 name: epithelium of endolymphatic duct namespace: uberon def: "An epithelium that is part of a endolymphatic duct [Obol]." [OBOL:automatic] synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic] xref: EMAPA:18582 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006937 ! inner ear epithelium [Term] id: UBERON:0003363 name: epithelium of ductus reuniens namespace: uberon def: "An epithelium that is part of a ductus reuniens [Obol]." [OBOL:automatic] synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic] xref: EMAPA:17289 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006937 ! inner ear epithelium [Term] id: UBERON:0003364 name: epithelium of right lung namespace: uberon def: "An epithelium that is part of a right lung [Obol]." [OBOL:automatic] synonym: "epithelial tissue of right lung" EXACT [OBOL:automatic] synonym: "right lung epithelial tissue" EXACT [OBOL:automatic] synonym: "right lung epithelium" EXACT [OBOL:automatic] xref: EMAPA:17663 is_a: UBERON:0000115 ! lung epithelium [Term] id: UBERON:0003365 name: epithelium of left lung namespace: uberon def: "An epithelium that is part of a left lung [Obol]." [OBOL:automatic] synonym: "epithelial tissue of left lung" EXACT [OBOL:automatic] synonym: "left lung epithelial tissue" EXACT [OBOL:automatic] synonym: "left lung epithelium" EXACT [OBOL:automatic] xref: EMAPA:17655 is_a: UBERON:0000115 ! lung epithelium [Term] id: UBERON:0003366 name: epithelium of uterine horn namespace: uberon def: "An epithelium that is part of a uterine horn [Obol]." [OBOL:automatic] synonym: "epithelial tissue of uterine horn" EXACT [OBOL:automatic] synonym: "uterine horn epithelial tissue" EXACT [OBOL:automatic] synonym: "uterine horn epithelium" EXACT [OBOL:automatic] xref: EMAPA:29030 is_a: UBERON:0006955 ! uterine epithelium [Term] id: UBERON:0003367 name: epithelium of vomeronasal organ namespace: uberon def: "An epithelium that is part of a vomeronasal organ [Obol]." [OBOL:automatic] synonym: "Jacobson's organ epithelial tissue" EXACT [OBOL:automatic] synonym: "Jacobson's organ epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic] synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic] synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic] synonym: "vomeronasal epithelium" EXACT [EHDAA2:0004102] synonym: "vomeronasal organ epithelial tissue" EXACT [OBOL:automatic] synonym: "vomeronasal organ epithelium" EXACT [OBOL:automatic] synonym: "vomeronasal organ sensory epithelium" EXACT [MA:0001328] xref: EHDAA2:0004102 xref: EMAPA:18444 xref: MA:0001328 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0004807 ! respiratory system epithelium is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0003368 name: epithelium of hard palate namespace: uberon def: "An epithelium that is part of a hard palate [Obol]." [OBOL:automatic] synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic] synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic] synonym: "hard palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18953 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003235 ! epithelium of upper jaw is_a: UBERON:0003929 ! gut epithelium [Term] id: UBERON:0003369 name: fossa ovalis of heart namespace: uberon def: "Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens." [Wikipedia:Fossa_ovalis_(heart)] synonym: "fossa ovalis" EXACT [FMA:9246] synonym: "oval fossa" EXACT [FMA:9246] xref: FMA:9246 xref: SCTID:277719009 is_a: UBERON:0006984 ! anatomical surface relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0003371 name: hindlimb bud ectoderm namespace: uberon alt_id: UBERON:0005232 synonym: "hindlimb ectoderm" EXACT [VHOG:0001048] synonym: "leg ectoderm" RELATED [OBOL:automatic] synonym: "lower limb bud ectoderm" EXACT [EHDAA2:0001034] xref: EHDAA2:0001034 xref: EMAPA:17254 xref: VHOG:0001048 is_a: UBERON:0000924 ! ectoderm is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003372 name: forelimb bud ectoderm namespace: uberon alt_id: UBERON:0005231 alt_id: UBERON:0005663 synonym: "arm ectoderm" RELATED [OBOL:automatic] synonym: "forelimb ectoderm" EXACT [VHOG:0001047] synonym: "upper limb bud ectoderm" EXACT [EHDAA2:0002134] synonym: "wing ectoderm" NARROW SENSU [Geisha:syn] xref: EHDAA2:0002134 xref: EMAPA:17243 xref: VHOG:0001047 is_a: UBERON:0000924 ! ectoderm is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003373 name: ectoderm of footplate namespace: uberon xref: EMAPA:17250 is_a: UBERON:0003371 ! hindlimb bud ectoderm [Term] id: UBERON:0003374 name: chorionic ectoderm namespace: uberon synonym: "chorion ectoderm" EXACT [OBOL:automatic] xref: EMAPA:16113 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003378 name: cardiac muscle of auricular region namespace: uberon synonym: "cardiac muscle tissue of auricle" EXACT [FMA:84279] xref: EMAPA:17318 xref: EMAPA:17324 xref: FMA:84279 is_a: UBERON:0004490 ! cardiac muscle tissue of atrium relationship: part_of UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0003379 name: cardiac muscle of right atrium namespace: uberon def: "A portion of cardiac muscle tissue that is part of a right atrium [Obol]." [OBOL:automatic] synonym: "cardiac muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "cardiac right atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "heart right atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of right cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "right atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "right atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right cardiac atrium" EXACT [OBOL:automatic] xref: EHDAA2:0004155 xref: EMAPA:17326 xref: FMA:7282 xref: VHOG:0001227 is_a: UBERON:0004490 ! cardiac muscle tissue of atrium [Term] id: UBERON:0003380 name: cardiac muscle of left atrium namespace: uberon def: "A portion of cardiac muscle tissue that is part of a left atrium [Obol]." [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "cardiac left atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "heart left atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "left atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "left atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of left cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left cardiac atrium" EXACT [OBOL:automatic] xref: EHDAA2:0004154 xref: EMAPA:17320 xref: FMA:7285 xref: VHOG:0001225 is_a: UBERON:0004490 ! cardiac muscle tissue of atrium [Term] id: UBERON:0003381 name: cardiac muscle of right ventricle namespace: uberon def: "A portion of cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic] synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221] xref: EMAPA:17342 xref: FMA:83452 xref: VHOG:0001236 is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0003382 name: cardiac muscle of left ventricle namespace: uberon def: "A portion of cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic] synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220] xref: EMAPA:17339 xref: FMA:83453 xref: VHOG:0001234 is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0003383 name: cardiac muscle of interventricular septum namespace: uberon def: "A portion of cardiac muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic] synonym: "cardiac muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "interventricular septum myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "ventricular septum myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic] xref: EHDAA2:0004158 xref: EMAPA:17335 xref: FMA:84084 xref: VHOG:0000999 is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum is_a: UBERON:0004667 ! interventricular septum muscular part [Term] id: UBERON:0003384 name: skeletal muscle of pharynx namespace: uberon def: "A portion of skeletal muscle tissue that is part of a pharynx [Obol]." [OBOL:automatic] synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic] synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic] xref: EMAPA:18963 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004830 ! respiratory system skeletal muscle [Term] id: UBERON:0003385 name: skeletal muscle of mesenchyme namespace: uberon def: "A portion of skeletal muscle tissue that is part of a mesenchyme [Obol]." [OBOL:automatic] synonym: "mesenchyme skeletal muscle" EXACT [OBOL:automatic] synonym: "mesenchyme skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:19066 xref: EMAPA:19071 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0003386 name: smooth muscle of eye namespace: uberon def: "A portion of smooth muscle tissue that is part of a eye [Obol]." [OBOL:automatic] xref: EMAPA:18807 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003387 name: smooth muscle of trachea namespace: uberon alt_id: UBERON:0004244 def: "A portion of smooth muscle tissue that is part of a trachea [Obol]." [OBOL:automatic] synonym: "trachea smooth muscle" EXACT [MA:0001863] synonym: "tracheal smooth muscle" EXACT [BTO:0001391] xref: BTO:0001391 xref: EMAPA:19192 xref: FMA:262010 xref: MA:0001863 xref: ncithesaurus:Trachea_Smooth_Muscle_Tissue is_a: UBERON:0004233 ! lower respiratory tract smooth muscle [Term] id: UBERON:0003388 name: mesothelium of pericardial cavity namespace: uberon def: "A mesothelium that is part of a pericardial cavity [Obol]." [OBOL:automatic] synonym: "cavity of pericardial sac meso-epithelium" EXACT [OBOL:automatic] synonym: "cavity of pericardial sac mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of cavity of pericardial sac" EXACT [OBOL:automatic] synonym: "meso-epithelium of pericardial cavity" EXACT [OBOL:automatic] synonym: "mesothelium of cavity of pericardial sac" EXACT [OBOL:automatic] synonym: "pericardial cavity meso-epithelium" EXACT [OBOL:automatic] synonym: "pericardial cavity mesothelium" EXACT [OBOL:automatic] xref: EMAPA:18449 xref: RETIRED_EHDAA2:0001436 is_a: UBERON:0001136 ! mesothelium [Term] id: UBERON:0003389 name: mesothelium of diaphragm namespace: uberon def: "A mesothelium that is part of a diaphragm [Obol]." [OBOL:automatic] synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic] synonym: "diaphragm mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic] synonym: "meso-epithelium of thoracic diaphragm" EXACT [OBOL:automatic] synonym: "mesothelium of thoracic diaphragm" EXACT [OBOL:automatic] synonym: "thoracic diaphragm meso-epithelium" EXACT [OBOL:automatic] synonym: "thoracic diaphragm mesothelium" EXACT [OBOL:automatic] xref: EMAPA:18429 is_a: UBERON:0001136 ! mesothelium is_a: UBERON:0004807 ! respiratory system epithelium [Term] id: UBERON:0003390 name: mesothelium of pleural cavity namespace: uberon def: "A mesothelium that is part of a pleural cavity [Obol]." [OBOL:automatic] synonym: "meso-epithelium of pleural cavity" EXACT [OBOL:automatic] synonym: "pleural cavity meso-epithelium" EXACT [OBOL:automatic] synonym: "pleural cavity mesothelium" EXACT [OBOL:automatic] xref: BTO:0003155 xref: EHDAA2:0001476 xref: EMAPA:18463 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001136 ! mesothelium is_a: UBERON:0004815 ! lower respiratory tract epithelium [Term] id: UBERON:0003393 name: mesentery of urinary system namespace: uberon def: "A mesentery that is part of a urinary system [Obol]." [OBOL:automatic] synonym: "excretory system mesentery" EXACT [OBOL:automatic] synonym: "mesentery of excretory system" EXACT [OBOL:automatic] synonym: "mesentery of renal system" EXACT [OBOL:automatic] synonym: "mesentery of systema urinaria" EXACT [OBOL:automatic] synonym: "renal system mesentery" EXACT [OBOL:automatic] synonym: "systema urinaria mesentery" EXACT [OBOL:automatic] synonym: "urinary system mesentery" EXACT [OBOL:automatic] xref: EMAPA:17367 is_a: UBERON:0002095 ! mesentery is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0003394 name: mesentery of hindgut namespace: uberon def: "A mesentery that is part of a hindgut [Obol]." [OBOL:automatic] synonym: "hindgut mesentery" EXACT [OBOL:automatic] xref: EMAPA:16718 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! mesentery [Term] id: UBERON:0003395 name: mesentery of rectum namespace: uberon def: "A mesentery that is part of a rectum [Obol]." [OBOL:automatic] synonym: "rectum mesentery" EXACT [OBOL:automatic] xref: EMAPA:18664 xref: EMAPA:18929 is_a: UBERON:0003334 ! serosa of rectum is_a: UBERON:0004854 ! gastrointestinal system mesentery [Term] id: UBERON:0003396 name: mesentery of colon namespace: uberon def: "A mesentery that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon mesentery" EXACT [OBOL:automatic] synonym: "large bowel mesentery" EXACT [OBOL:automatic] synonym: "large intestinal mesentery" EXACT [FMA:14645] synonym: "mesentery of large bowel" EXACT [OBOL:automatic] synonym: "mesentery of large intestine" EXACT [FMA:14645] xref: EMAPA:18942 xref: FMA:14645 xref: SCTID:245457004 is_a: UBERON:0003335 ! serosa of colon is_a: UBERON:0004854 ! gastrointestinal system mesentery is_a: UBERON:0007826 ! peritoneal mesentery [Term] id: UBERON:0003397 name: mesentery of duodenum namespace: uberon def: "A mesentery that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "duodenum mesentery" EXACT [OBOL:automatic] xref: EMAPA:19081 is_a: UBERON:0001170 ! mesentery of small intestine is_a: UBERON:0003336 ! serosa of duodenum [Term] id: UBERON:0003398 name: mesentery of jejunum namespace: uberon def: "A mesentery that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal mesentery" EXACT [] synonym: "jejunum mesentery" EXACT [] synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] xref: EMAPA:18670 xref: EMAPA:18937 xref: FMA:14651 xref: SCTID:261286003 is_a: UBERON:0001170 ! mesentery of small intestine is_a: UBERON:0003337 ! serosa of jejunum [Term] id: UBERON:0003403 name: skin of forearm namespace: uberon def: "A zone of skin that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region skin" EXACT [OBOL:automatic] synonym: "arm middle limb segment skin" EXACT [OBOL:automatic] synonym: "arm zeugopod skin" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment skin" EXACT [OBOL:automatic] synonym: "brachial region zeugopod skin" EXACT [OBOL:automatic] synonym: "forearm skin" EXACT [FMA:38265] synonym: "intermediate segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "lower arm skin" EXACT [OBOL:automatic] synonym: "lower segment of arm skin" EXACT [OBOL:automatic] synonym: "middle limb segment of arm skin" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region skin" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod skin" EXACT [OBOL:automatic] synonym: "skin of antebrachial region" EXACT [OBOL:automatic] synonym: "skin of arm middle limb segment" EXACT [OBOL:automatic] synonym: "skin of arm zeugopod" EXACT [OBOL:automatic] synonym: "skin of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "skin of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "skin of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of lower arm" EXACT [OBOL:automatic] synonym: "skin of lower segment of arm" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "skin of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "skin of zeugopod of arm" EXACT [OBOL:automatic] synonym: "skin of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "skin of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "zeugopod of arm skin" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region skin" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb skin" EXACT [OBOL:automatic] xref: EMAPA:18056 xref: FMA:38265 xref: MA:0000602 xref: SCTID:181537008 is_a: UBERON:0002427 ! arm skin [Term] id: UBERON:0003404 name: lobar bronchus of right lung namespace: uberon def: "A lobar bronchus that is part of a right lung [Obol]." [OBOL:automatic] synonym: "right lung lobar bronchus" EXACT [OBOL:automatic] synonym: "right lung secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus of right lung" EXACT [OBOL:automatic] xref: EMAPA:17664 is_a: UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0003405 name: lobar bronchus of left lung namespace: uberon def: "A lobar bronchus that is part of a left lung [Obol]." [OBOL:automatic] synonym: "left lung lobar bronchus" EXACT [OBOL:automatic] synonym: "left lung secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus of left lung" EXACT [OBOL:automatic] xref: EMAPA:17656 is_a: UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0003406 name: cartilage of respiratory system namespace: uberon def: "A cartilage that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic] synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory system cartilage" EXACT [OBOL:automatic] xref: EMAPA:18694 xref: MA:0001818 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003570 ! respiratory system connective tissue [Term] id: UBERON:0003407 name: cartilage of nasal septum namespace: uberon def: "A cartilage that is part of a nasal septum [Obol]." [OBOL:automatic] synonym: "cartilago septal nasi" EXACT [FMA:59503] synonym: "nasal septum cartilage" EXACT [OBOL:automatic] synonym: "septal nasal cartilage" EXACT [FMA:59503] xref: EMAPA:25091 xref: FMA:59503 is_a: UBERON:0001823 ! nasal cartilage [Term] id: UBERON:0003408 name: gland of gut namespace: uberon def: "A gland that is part of a digestive tract [Obol]." [OBOL:automatic] synonym: "digestive tract gland" EXACT [OBOL:automatic] synonym: "gland of digestive tract" EXACT [OBOL:automatic] synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic] synonym: "gut gland" EXACT [OBOL:automatic] synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic] xref: EMAPA:18815 is_a: UBERON:0002530 ! gland is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0003409 name: gland of tongue namespace: uberon def: "A gland that is part of a tongue [Obol]." [OBOL:automatic] synonym: "tongue gland" EXACT [OBOL:automatic] xref: EMAPA:25097 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0010047 ! oral gland [Term] id: UBERON:0003410 name: oropharyngeal gland namespace: uberon def: "A gland that is part of a oropharynx [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic] synonym: "gland of oropharynx" EXACT [EMAPA:25095] synonym: "oral part of pharynx gland" EXACT [OBOL:automatic] synonym: "oropharynx gland" EXACT [OBOL:automatic] xref: EMAPA:25095 is_a: UBERON:0003295 ! pharyngeal gland [Term] id: UBERON:0003411 name: mesenchyme of amnion namespace: uberon def: "A mesenchyme that is part of an amnion [Obol]." [OBOL:automatic] synonym: "amnion mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:16265 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003412 name: hindlimb bud mesenchyme namespace: uberon synonym: "leg mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17255 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0003413 name: forelimb bud mesenchyme namespace: uberon alt_id: UBERON:0005703 synonym: "arm mesenchyme" EXACT [OBOL:automatic] synonym: "wing mesenchyme" NARROW [OBOL:automatic] xref: EHDAA2:0002135 xref: EHDAA:1703 xref: EMAPA:17244 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0003414 name: mesenchyme of mandible namespace: uberon def: "A mesenchyme that is part of a mandible [Obol]." [OBOL:automatic] synonym: "bone of lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "bone of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] synonym: "bone organ of lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "bone organ of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] synonym: "lower jaw bone mesenchyme" EXACT [OBOL:automatic] synonym: "lower jaw bone organ mesenchyme" EXACT [OBOL:automatic] synonym: "mandible mesenchyme" EXACT [OBOL:automatic] synonym: "mandibulla mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of bone of lower jaw" EXACT [OBOL:automatic] synonym: "mesenchyme of bone of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "mesenchyme of bone organ of lower jaw" EXACT [OBOL:automatic] synonym: "mesenchyme of bone organ of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "mesenchyme of lower jaw bone" EXACT [OBOL:automatic] synonym: "mesenchyme of lower jaw bone organ" EXACT [OBOL:automatic] synonym: "mesenchyme of mandibulla" EXACT [OBOL:automatic] synonym: "mesenchyme of ventral mandibular arch bone" EXACT [OBOL:automatic] synonym: "mesenchyme of ventral mandibular arch bone organ" EXACT [OBOL:automatic] synonym: "ventral mandibular arch bone mesenchyme" EXACT [OBOL:automatic] synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17912 is_a: UBERON:0003324 ! mesenchyme of lower jaw [Term] id: UBERON:0003415 name: mesenchyme of nasal septum namespace: uberon def: "A mesenchyme that is part of a nasal septum [Obol]." [OBOL:automatic] synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18443 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003416 name: mesenchyme of tongue namespace: uberon def: "A mesenchyme that is part of a tongue [Obol]." [OBOL:automatic] comment: todo - develops_from synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614] xref: EHDAA2:0004614 xref: EMAPA:17882 xref: EMAPA:18878 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003417 name: mesenchyme of soft palate namespace: uberon def: "A mesenchyme that is part of a soft palate [Obol]." [OBOL:automatic] synonym: "soft palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18951 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003323 ! mesenchyme of upper jaw [Term] id: UBERON:0003418 name: mesenchyme of submandibular gland namespace: uberon def: "A mesenchyme that is part of a submandibular gland [Obol]." [OBOL:automatic] synonym: "submandibular gland mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18814 xref: VHOG:0001110 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003419 name: mesenchyme of parotid namespace: uberon def: "A mesenchyme that is part of a parotid gland [Obol]." [OBOL:automatic] synonym: "mesenchyme of parotid gland" EXACT [OBOL:automatic] synonym: "parotid gland mesenchyme" EXACT [OBOL:automatic] synonym: "parotid mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18539 xref: VHOG:0001435 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003420 name: mesenchyme of sublingual gland namespace: uberon def: "A mesenchyme that is part of a sublingual gland [Obol]." [OBOL:automatic] synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic] synonym: "ductus sublingualis mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of Rivinus'gland" EXACT [OBOL:automatic] synonym: "mesenchyme of ductus sublingualis" EXACT [OBOL:automatic] synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18811 xref: VHOG:0001106 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003421 name: mesenchyme of vomeronasal organ namespace: uberon def: "A mesenchyme that is part of a vomeronasal organ [Obol]." [OBOL:automatic] synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic] synonym: "vomeronasal mesenchyme" EXACT [EHDAA2:0004103] synonym: "vomeronasal organ mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0004103 xref: EMAPA:18445 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003422 name: mesenchyme of umbilical cord namespace: uberon def: "a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly] comment: todo - check synonym: "Wharton's jelly" EXACT [EMAPA:26127] synonym: "umbilical cord mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:26127 xref: SCTID:368069009 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003423 name: mesenchyme of chorion namespace: uberon def: "A mesenchyme that is part of a chorion [Obol]." [OBOL:automatic] synonym: "chorion mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of chorion (vertebrates)" EXACT [OBOL:automatic] xref: EHDAA2:0003245 xref: EMAPA:16266 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003424 name: mesenchyme of hard palate namespace: uberon def: "A mesenchyme that is part of a hard palate [Obol]." [OBOL:automatic] synonym: "hard palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18954 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003323 ! mesenchyme of upper jaw [Term] id: UBERON:0003425 name: renal lymph node namespace: uberon def: "A lymph node that is part of a kidney [Obol]." [OBOL:automatic] synonym: "kidney lymph node" EXACT [OBOL:automatic] synonym: "lymph node of kidney" EXACT [OBOL:automatic] xref: MA:0002882 xref: ncithesaurus:Renal_Lymph_Node is_a: UBERON:0002507 ! abdominal lymph node is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0003426 name: dermis adipose tissue namespace: uberon def: "An adipose tissue that is part of a dermis [Obol]." [OBOL:automatic] synonym: "adipose tissue of dermis" EXACT [OBOL:automatic] synonym: "dermis fat tissue" EXACT [OBOL:automatic] synonym: "dermis fatty tissue" EXACT [OBOL:automatic] synonym: "fat tissue of dermis" EXACT [OBOL:automatic] synonym: "fatty tissue of dermis" EXACT [OBOL:automatic] xref: MA:0000798 is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003585 ! dermis connective tissue [Term] id: UBERON:0003427 name: abdominal fat pad namespace: uberon def: "the encapsulated adipose tissue in the abdomen." [MP:0000010] synonym: "abdomen fat pad" EXACT [OBOL:automatic] synonym: "fat pad of abdomen" EXACT [OBOL:automatic] xref: MA:0000472 is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0003916 ! fat pad [Term] id: UBERON:0003428 name: gonadal fat pad namespace: uberon def: "the encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335] synonym: "fat pad of gonad" EXACT [OBOL:automatic] synonym: "fat pad of gonada" EXACT [OBOL:automatic] synonym: "gonad fat pad" EXACT [OBOL:automatic] synonym: "gonada fat pad" EXACT [OBOL:automatic] xref: MA:0002547 is_a: UBERON:0003916 ! fat pad is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0003429 name: abdomen nerve namespace: uberon def: "A nerve that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "nerve of abdomen" EXACT [OBOL:automatic] xref: MA:0000521 is_a: UBERON:0003825 ! abdominal segment nerve [Term] id: UBERON:0003430 name: neck nerve namespace: uberon def: "A nerve that is part of a neck [Obol]." [OBOL:automatic] synonym: "neck (volume) nerve" EXACT [OBOL:automatic] synonym: "nerve of neck" EXACT [OBOL:automatic] synonym: "nerve of neck (volume)" EXACT [OBOL:automatic] xref: MA:0000588 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003431 name: leg nerve namespace: uberon def: "A nerve that is part of a leg [Obol]." [OBOL:automatic] synonym: "nerve of leg" EXACT [OBOL:automatic] xref: MA:0000673 is_a: UBERON:0003442 ! hindlimb nerve [Term] id: UBERON:0003432 name: chest nerve namespace: uberon def: "A nerve that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region nerve" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax nerve" EXACT [OBOL:automatic] synonym: "front of thorax nerve" EXACT [OBOL:automatic] synonym: "nerve of anterior thoracic region" EXACT [OBOL:automatic] synonym: "nerve of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "nerve of chest" EXACT [OBOL:automatic] synonym: "nerve of front of thorax" EXACT [OBOL:automatic] xref: MA:0000551 is_a: UBERON:0003824 ! thoracic segment nerve [Term] id: UBERON:0003433 name: arm nerve namespace: uberon def: "A nerve that is part of an arm [Obol]." [OBOL:automatic] synonym: "brachial region nerve" EXACT [OBOL:automatic] synonym: "nerve of arm" EXACT [OBOL:automatic] synonym: "nerve of brachial region" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb nerve" EXACT [OBOL:automatic] xref: MA:0000595 is_a: UBERON:0003441 ! forelimb nerve [Term] id: UBERON:0003434 name: wrist nerve namespace: uberon def: "A nerve that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region nerve" EXACT [OBOL:automatic] synonym: "nerve of carpal region" EXACT [OBOL:automatic] synonym: "nerve of wrist" EXACT [OBOL:automatic] xref: MA:0000637 is_a: UBERON:0003441 ! forelimb nerve [Term] id: UBERON:0003435 name: foot digit nerve namespace: uberon def: "A nerve that is part of a toe [Obol]." [OBOL:automatic] synonym: "digit of foot nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb nerve" EXACT [OBOL:automatic] synonym: "digitus pedis nerve" EXACT [OBOL:automatic] synonym: "nerve of digit of foot" EXACT [OBOL:automatic] synonym: "nerve of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "nerve of digitus pedis" EXACT [OBOL:automatic] synonym: "nerve of foot digit" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "nerve of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit nerve" EXACT [OBOL:automatic] synonym: "toe nerve" EXACT [OBOL:automatic] xref: MA:0000649 xref: SCTID:300056004 is_a: UBERON:0003445 ! foot nerve [Term] id: UBERON:0003436 name: shoulder nerve namespace: uberon def: "A nerve that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "nerve of shoulder" EXACT [OBOL:automatic] xref: MA:0000634 is_a: UBERON:0003441 ! forelimb nerve [Term] id: UBERON:0003437 name: eyelid nerve namespace: uberon def: "A nerve that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon nerve" EXACT [OBOL:automatic] synonym: "nerve of blepharon" EXACT [OBOL:automatic] synonym: "nerve of eyelid" EXACT [OBOL:automatic] xref: MA:0001255 is_a: UBERON:0001647 ! facial nerve [Term] id: UBERON:0003438 name: iris nerve namespace: uberon def: "A nerve that is part of a iris [Obol]." [OBOL:automatic] synonym: "nerve of iris" EXACT [OBOL:automatic] xref: MA:0001291 is_a: UBERON:0001647 ! facial nerve [Term] id: UBERON:0003439 name: trunk nerve namespace: uberon def: "A nerve that is part of a trunk [Obol]." [OBOL:automatic] synonym: "nerve of torso" EXACT [OBOL:automatic] synonym: "nerve of trunk" EXACT [OBOL:automatic] synonym: "torso nerve" EXACT [OBOL:automatic] xref: EMAPA:16986 xref: MA:0000515 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003440 name: limb nerve namespace: uberon def: "A nerve that is part of a limb [Obol]." [OBOL:automatic] synonym: "nerve of limb" EXACT [OBOL:automatic] xref: MA:0000693 is_a: UBERON:0001021 ! nerve is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003441 name: forelimb nerve namespace: uberon def: "A nerve that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb nerve" EXACT [OBOL:automatic] synonym: "fore limb nerve" EXACT [OBOL:automatic] synonym: "nerve of anteriormost limb" EXACT [OBOL:automatic] synonym: "nerve of fore limb" EXACT [OBOL:automatic] synonym: "nerve of forelimb" EXACT [OBOL:automatic] synonym: "nerve of superior member" EXACT [OBOL:automatic] synonym: "nerve of upper extremity" EXACT [OBOL:automatic] synonym: "superior member nerve" EXACT [OBOL:automatic] synonym: "upper extremity nerve" EXACT [OBOL:automatic] xref: MA:0000616 is_a: UBERON:0003440 ! limb nerve [Term] id: UBERON:0003442 name: hindlimb nerve namespace: uberon def: "A nerve that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb nerve" EXACT [OBOL:automatic] synonym: "inferior member nerve" EXACT [OBOL:automatic] synonym: "lower extremity nerve" EXACT [OBOL:automatic] synonym: "nerve of hind limb" EXACT [OBOL:automatic] synonym: "nerve of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of inferior member" EXACT [OBOL:automatic] synonym: "nerve of lower extremity" EXACT [OBOL:automatic] xref: MA:0000664 is_a: UBERON:0003440 ! limb nerve [Term] id: UBERON:0003443 name: thoracic cavity nerve namespace: uberon def: "A nerve that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "cavity of chest nerve" EXACT [OBOL:automatic] synonym: "cavity of thorax nerve" EXACT [OBOL:automatic] synonym: "chest cavity nerve" EXACT [OBOL:automatic] synonym: "nerve of cavity of chest" EXACT [OBOL:automatic] synonym: "nerve of cavity of thorax" EXACT [OBOL:automatic] synonym: "nerve of chest cavity" EXACT [OBOL:automatic] synonym: "nerve of pectoral cavity" EXACT [OBOL:automatic] synonym: "nerve of thoracic cavity" EXACT [OBOL:automatic] synonym: "pectoral cavity nerve" EXACT [OBOL:automatic] xref: MA:0000556 is_a: UBERON:0003824 ! thoracic segment nerve [Term] id: UBERON:0003444 name: pelvis nerve namespace: uberon def: "A nerve that is part of a pelvis [Obol]." [OBOL:automatic] synonym: "nerve of pelvis" EXACT [OBOL:automatic] xref: MA:0000542 is_a: UBERON:0003825 ! abdominal segment nerve [Term] id: UBERON:0003445 name: foot nerve namespace: uberon def: "A nerve that is part of a foot [Obol]." [OBOL:automatic] synonym: "autopod of hind limb nerve" EXACT [OBOL:automatic] synonym: "autopod of hindlimb nerve" EXACT [OBOL:automatic] synonym: "autopod of inferior member nerve" EXACT [OBOL:automatic] synonym: "autopod of lower extremity nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity nerve" EXACT [OBOL:automatic] synonym: "hind limb autopod nerve" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "hindlimb autopod nerve" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "inferior member autopod nerve" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "lower extremity autopod nerve" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "nerve of autopod of hind limb" EXACT [OBOL:automatic] synonym: "nerve of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of autopod of inferior member" EXACT [OBOL:automatic] synonym: "nerve of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "nerve of foot" EXACT [OBOL:automatic] synonym: "nerve of hind limb autopod" EXACT [OBOL:automatic] synonym: "nerve of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of hindlimb autopod" EXACT [OBOL:automatic] synonym: "nerve of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of inferior member autopod" EXACT [OBOL:automatic] synonym: "nerve of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of lower extremity autopod" EXACT [OBOL:automatic] synonym: "nerve of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb nerve" EXACT [OBOL:automatic] xref: MA:0000653 is_a: UBERON:0003442 ! hindlimb nerve [Term] id: UBERON:0003446 name: ankle nerve namespace: uberon def: "A nerve that is part of an ankle [Obol]." [OBOL:automatic] synonym: "nerve of ankle" EXACT [OBOL:automatic] xref: MA:0000640 is_a: UBERON:0003442 ! hindlimb nerve [Term] id: UBERON:0003447 name: hand digit nerve namespace: uberon def: "A nerve that is part of a finger [Obol]." [OBOL:automatic] synonym: "digit of hand nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "digitus manus nerve" EXACT [OBOL:automatic] synonym: "finger nerve" EXACT [OBOL:automatic] synonym: "nerve of digit of hand" EXACT [OBOL:automatic] synonym: "nerve of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of digitus manus" EXACT [OBOL:automatic] synonym: "nerve of finger" EXACT [OBOL:automatic] synonym: "nerve of hand digit" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit nerve" EXACT [OBOL:automatic] xref: MA:0000625 xref: SCTID:181015006 is_a: UBERON:0003448 ! hand nerve [Term] id: UBERON:0003448 name: hand nerve namespace: uberon def: "A nerve that is part of a hand [Obol]." [OBOL:automatic] synonym: "arm autopod nerve" EXACT [OBOL:automatic] synonym: "arm distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "autopod of arm nerve" EXACT [OBOL:automatic] synonym: "autopod of brachial region nerve" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "brachial region autopod nerve" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "nerve of arm autopod" EXACT [OBOL:automatic] synonym: "nerve of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of autopod of arm" EXACT [OBOL:automatic] synonym: "nerve of autopod of brachial region" EXACT [OBOL:automatic] synonym: "nerve of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of brachial region autopod" EXACT [OBOL:automatic] synonym: "nerve of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of hand" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod nerve" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb nerve" EXACT [OBOL:automatic] xref: MA:0000629 is_a: UBERON:0003441 ! forelimb nerve [Term] id: UBERON:0003449 name: tail intervertebral disc namespace: uberon def: "A intervertebral disk that is part of a tail [Obol]." [OBOL:automatic] synonym: "intervertebral disc of post-vent region" EXACT [OBOL:automatic] synonym: "intervertebral disc of tail" EXACT [OBOL:automatic] synonym: "intervertebral disk of post-vent region" EXACT [OBOL:automatic] synonym: "intervertebral disk of tail" EXACT [OBOL:automatic] synonym: "post-vent region intervertebral disc" EXACT [OBOL:automatic] synonym: "post-vent region intervertebral disk" EXACT [OBOL:automatic] synonym: "post-vent region spinal disc" EXACT [OBOL:automatic] synonym: "spinal disc of post-vent region" EXACT [OBOL:automatic] synonym: "spinal disc of tail" EXACT [OBOL:automatic] synonym: "tail intervertebral disk" EXACT [OBOL:automatic] synonym: "tail spinal disc" EXACT [OBOL:automatic] xref: EMAPA:19592 xref: MA:0000698 is_a: UBERON:0001066 ! intervertebral disk is_a: UBERON:0003599 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! tail connective tissue [Term] id: UBERON:0003450 name: upper jaw incisor namespace: uberon def: "A incisor tooth that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "incisor of upper jaw" EXACT [OBOL:automatic] synonym: "incisor tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "incisor tooth of upper jaw" EXACT [OBOL:automatic] synonym: "palatoquadrate arch incisor" EXACT [OBOL:automatic] synonym: "palatoquadrate arch incisor tooth" EXACT [OBOL:automatic] synonym: "upper incisor" EXACT [OBOL:automatic, UBERON:cjm] synonym: "upper jaw incisor tooth" EXACT [OBOL:automatic] synonym: "upper primary incisor tooth" NARROW [FMA:84214] xref: EHDAA2:0002121 xref: EMAPA:17939 xref: FMA:55712 xref: MA:0001601 xref: ncithesaurus:Upper_Jaw_Incisor is_a: UBERON:0001098 ! incisor tooth is_a: UBERON:0003267 ! tooth of upper jaw [Term] id: UBERON:0003451 name: lower jaw incisor namespace: uberon def: "A incisor tooth that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "incisor of lower jaw" EXACT [OBOL:automatic] synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "incisor tooth of lower jaw" EXACT [OBOL:automatic] synonym: "incisor tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower incisor" EXACT [OBOL:automatic, UBERON:cjm] synonym: "lower jaw incisor tooth" EXACT [OBOL:automatic] synonym: "lower primary incisor tooth" NARROW [FMA:84215] synonym: "mandibular incisor" EXACT [BTO:0001942] synonym: "ventral mandibular arch incisor" EXACT [OBOL:automatic] synonym: "ventral mandibular arch incisor tooth" EXACT [OBOL:automatic] xref: BTO:0001942 xref: EHDAA2:0001021 xref: EMAPA:17918 xref: FMA:55713 xref: MA:0001600 xref: ncithesaurus:Lower_Jaw_Incisor is_a: UBERON:0001098 ! incisor tooth is_a: UBERON:0003268 ! tooth of lower jaw [Term] id: UBERON:0003452 name: trabecula carnea cardiac muscle tissue namespace: uberon def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Obol]." [OBOL:automatic] synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of myocardium" EXACT [OBOL:automatic] xref: FMA:84428 xref: MA:0002833 is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0003453 name: large intestine Peyer's patch namespace: uberon def: "A Peyer ' s patch that is part of a large intestine [Obol]." [OBOL:automatic] synonym: "Peyer's patch of large intestine" EXACT [OBOL:automatic] synonym: "large intestine Peyer's patch" EXACT [OBOL:automatic] xref: MA:0001550 is_a: UBERON:0001211 ! Peyer's patch [Term] id: UBERON:0003454 name: small intestine Peyer's patch namespace: uberon def: "nodular lymphoid structures on the serosal surface of the small intestine." [] synonym: "Aggregated lymphoid follicle of small intestine" EXACT [] synonym: "Peyer's patch of small bowel" EXACT [OBOL:automatic] synonym: "Peyer's patch of small intestine" EXACT [OBOL:automatic] synonym: "small bowel Peyer's patch" EXACT [OBOL:automatic] synonym: "small intestine Peyer's patch" EXACT [OBOL:automatic] xref: FMA:15054 xref: MA:0001557 is_a: UBERON:0001211 ! Peyer's patch [Term] id: UBERON:0003455 name: inner renal medulla loop of henle namespace: uberon def: "A loop of Henle that is part of a inner medulla of kidney [Obol]." [OBOL:automatic] synonym: "Henle loop of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "Henle loop of inner renal medulla" EXACT [OBOL:automatic] synonym: "Henle loop of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "Henle loop of inner zone of renal medulla" EXACT [OBOL:automatic] synonym: "henle's loop of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "henle's loop of inner renal medulla" EXACT [OBOL:automatic] synonym: "henle's loop of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "henle's loop of inner zone of renal medulla" EXACT [OBOL:automatic] synonym: "inner medulla of kidney Henle loop" EXACT [OBOL:automatic] synonym: "inner medulla of kidney henle's loop" EXACT [OBOL:automatic] synonym: "inner medulla of kidney loop of Henle" EXACT [OBOL:automatic] synonym: "inner renal medulla Henle loop" EXACT [OBOL:automatic] synonym: "inner renal medulla henle's loop" EXACT [OBOL:automatic] synonym: "inner renal medulla loop of Henle" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney Henle loop" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney henle's loop" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney loop of Henle" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla Henle loop" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla henle's loop" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla loop of Henle" EXACT [OBOL:automatic] synonym: "loop of Henle of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "loop of Henle of inner renal medulla" EXACT [OBOL:automatic] synonym: "loop of Henle of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "loop of Henle of inner zone of renal medulla" EXACT [OBOL:automatic] xref: MA:0002623 is_a: UBERON:0001288 ! loop of Henle [Term] id: UBERON:0003456 name: respiratory system lymphatic vessel namespace: uberon def: "A lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic] xref: MA:0001824 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0003457 name: head bone namespace: uberon def: "A bone that is part of a head [Obol]." [OBOL:automatic] synonym: "adult head bone" EXACT [OBOL:automatic] synonym: "adult head bone organ" EXACT [OBOL:automatic] synonym: "bone of adult head" EXACT [OBOL:automatic] synonym: "bone of head" EXACT [OBOL:automatic] synonym: "bone organ of adult head" EXACT [OBOL:automatic] synonym: "bone organ of head" EXACT [OBOL:automatic] synonym: "head bone organ" EXACT [OBOL:automatic] xref: MA:0000576 xref: SCTID:118646007 is_a: UBERON:0007914 ! head or neck bone [Term] id: UBERON:0003458 name: neck bone namespace: uberon def: "A bone that is part of a neck [Obol]." [OBOL:automatic] synonym: "bone of neck" EXACT [OBOL:automatic] synonym: "bone of neck (volume)" EXACT [OBOL:automatic] synonym: "bone organ of neck" EXACT [OBOL:automatic] synonym: "bone organ of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) bone" EXACT [OBOL:automatic] synonym: "neck (volume) bone organ" EXACT [OBOL:automatic] synonym: "neck bone organ" EXACT [OBOL:automatic] xref: MA:0000584 xref: OpenCyc:Mx4rvnpJSJwpEbGdrcN5Y29ycA is_a: UBERON:0007914 ! head or neck bone [Term] id: UBERON:0003459 name: chest bone namespace: uberon def: "A bone that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region bone" EXACT [OBOL:automatic] synonym: "anterior thoracic region bone organ" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax bone" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax bone organ" EXACT [OBOL:automatic] synonym: "bone of anterior thoracic region" EXACT [OBOL:automatic] synonym: "bone of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "bone of chest" EXACT [OBOL:automatic] synonym: "bone of front of thorax" EXACT [OBOL:automatic] synonym: "bone organ of anterior thoracic region" EXACT [OBOL:automatic] synonym: "bone organ of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "bone organ of chest" EXACT [OBOL:automatic] synonym: "bone organ of front of thorax" EXACT [OBOL:automatic] synonym: "chest bone organ" EXACT [OBOL:automatic] synonym: "front of thorax bone" EXACT [OBOL:automatic] synonym: "front of thorax bone organ" EXACT [OBOL:automatic] xref: MA:0000547 is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0005175 ! chest organ [Term] id: UBERON:0003460 name: arm bone namespace: uberon def: "A bone that is part of an arm [Obol]." [OBOL:automatic] synonym: "arm bone organ" EXACT [OBOL:automatic] synonym: "bone of arm" EXACT [OBOL:automatic] synonym: "bone of brachial region" EXACT [OBOL:automatic] synonym: "bone of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of upper extremity" EXACT [GAID:178] synonym: "bone organ of arm" EXACT [OBOL:automatic] synonym: "bone organ of brachial region" EXACT [OBOL:automatic] synonym: "bone organ of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region bone" EXACT [OBOL:automatic] synonym: "brachial region bone organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] xref: GAID:178 xref: MA:0000592 xref: MESH:A.02.835.232.087 xref: OpenCyc:Mx4rwKTXoJwpEbGdrcN5Y29ycA xref: SCTID:368532003 xref: ncithesaurus:Bone_of_the_Upper_Extremity is_a: UBERON:0008962 ! forelimb bone relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0003461 name: shoulder bone namespace: uberon def: "A bone that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "bone of shoulder" EXACT [OBOL:automatic] synonym: "bone organ of shoulder" EXACT [OBOL:automatic] synonym: "shoulder bone organ" EXACT [OBOL:automatic] xref: MA:0000631 is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008962 ! forelimb bone relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0003462 name: viscerocranium bone namespace: uberon def: "A bone that is part of a viscerocranium [Obol]." [OBOL:automatic] synonym: "bone of facial skeleton" EXACT [OBOL:automatic] synonym: "bone of viscerocranium" EXACT [OBOL:automatic] synonym: "facial bone" EXACT [EMAPA:19019] synonym: "facial skeleton bone" EXACT [OBOL:automatic] xref: EMAPA:19019 xref: MA:0001482 xref: ncithesaurus:Facial_Bone is_a: UBERON:0003457 ! head bone [Term] id: UBERON:0003463 name: trunk bone namespace: uberon def: "A bone that is part of a trunk [Obol]." [OBOL:automatic] synonym: "bone of torso" EXACT [OBOL:automatic] synonym: "bone of trunk" EXACT [OBOL:automatic] synonym: "bone organ of torso" EXACT [OBOL:automatic] synonym: "bone organ of trunk" EXACT [OBOL:automatic] synonym: "torso bone" EXACT [OBOL:automatic] synonym: "torso bone organ" EXACT [OBOL:automatic] synonym: "trunk bone organ" EXACT [OBOL:automatic] xref: MA:0000512 xref: SCTID:427358002 is_a: UBERON:0001474 ! bone is_a: UBERON:0005177 ! trunk organ [Term] id: UBERON:0003464 name: hindlimb bone namespace: uberon def: "A bone that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "bone of hind limb" EXACT [OBOL:automatic] synonym: "bone of hindlimb" EXACT [OBOL:automatic] synonym: "bone of inferior member" EXACT [OBOL:automatic] synonym: "bone of lower extremity" EXACT [OBOL:automatic] synonym: "bone organ of hind limb" EXACT [OBOL:automatic] synonym: "bone organ of hindlimb" EXACT [OBOL:automatic] synonym: "bone organ of inferior member" EXACT [OBOL:automatic] synonym: "bone organ of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb bone" EXACT [OBOL:automatic] synonym: "hind limb bone organ" EXACT [OBOL:automatic] synonym: "hindlimb bone organ" EXACT [OBOL:automatic] synonym: "inferior member bone" EXACT [OBOL:automatic] synonym: "inferior member bone organ" EXACT [OBOL:automatic] synonym: "lower extremity bone" EXACT [OBOL:automatic] synonym: "lower extremity bone organ" EXACT [OBOL:automatic] xref: EFO:0003842 xref: GAID:198 xref: MA:0000660 xref: SCTID:361370006 xref: ncithesaurus:Bone_of_the_Lower_Extremity is_a: UBERON:0002428 ! limb bone [Term] id: UBERON:0003465 name: chondrocranium bone namespace: uberon alt_id: UBERON:0004762 def: "A bone that is part of a chondrocranium [Obol]." [OBOL:automatic] comment: ZFA:0001544 class made obsolete. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bone of chondrocranium" EXACT [OBOL:automatic] synonym: "bone organ of chondrocranium" EXACT [OBOL:automatic] synonym: "chondrocranium bone organ" EXACT [OBOL:automatic] synonym: "endochondral neurocranium bone" EXACT [OBOL:automatic, UBERON:cjm] xref: MA:0001478 is_a: UBERON:0004766 ! cranial bone [Term] id: UBERON:0003466 name: lower arm bone namespace: uberon def: "A bone that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region bone" EXACT [OBOL:automatic] synonym: "antebrachial region bone organ" EXACT [OBOL:automatic] synonym: "arm middle limb segment bone" EXACT [OBOL:automatic] synonym: "arm middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "arm zeugopod bone" EXACT [OBOL:automatic] synonym: "arm zeugopod bone organ" EXACT [OBOL:automatic] synonym: "bone of antebrachial region" EXACT [OBOL:automatic] synonym: "bone of arm middle limb segment" EXACT [OBOL:automatic] synonym: "bone of arm zeugopod" EXACT [OBOL:automatic] synonym: "bone of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "bone of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "bone of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of lower arm" EXACT [OBOL:automatic] synonym: "bone of lower segment of arm" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "bone of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "bone of zeugopod of arm" EXACT [OBOL:automatic] synonym: "bone of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "bone of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of antebrachial region" EXACT [OBOL:automatic] synonym: "bone organ of arm middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of arm zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of lower arm" EXACT [OBOL:automatic] synonym: "bone organ of lower segment of arm" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of arm" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment bone" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "brachial region zeugopod bone" EXACT [OBOL:automatic] synonym: "brachial region zeugopod bone organ" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb bone organ" EXACT [OBOL:automatic] synonym: "lower arm bone organ" EXACT [OBOL:automatic] synonym: "lower segment of arm bone" EXACT [OBOL:automatic] synonym: "lower segment of arm bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of arm bone" EXACT [OBOL:automatic] synonym: "middle limb segment of arm bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region bone" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment bone" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod bone" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of arm bone" EXACT [OBOL:automatic] synonym: "zeugopod of arm bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region bone" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] xref: MA:0000598 is_a: UBERON:0003460 ! arm bone [Term] id: UBERON:0003467 name: sesamoid bone of gastrocnemius namespace: uberon def: "A small sesamoid bone situated behind a condyle of the femur." [MP:0009005, Wikipedia:Fabella, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834] synonym: "fabella" RELATED [MA:0001378] synonym: "gastrocnemius sesamoid bone" EXACT [OBOL:automatic] synonym: "m. gastrocnemius sesamoid bone" EXACT [OBOL:automatic] synonym: "sesamoid bone of m. gastrocnemius" EXACT [OBOL:automatic] xref: MA:0001378 xref: SCTID:302749009 xref: galen:Fabella is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0004251 ! lower leg bone relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0003468 name: ureteric artery namespace: uberon def: "An artery that is part of a ureter [Obol]." [OBOL:automatic] xref: MA:0002074 is_a: UBERON:0001637 ! artery is_a: UBERON:0003520 ! pelvis blood vessel is_a: UBERON:0006555 ! excretory tube [Term] id: UBERON:0003469 name: respiratory system artery namespace: uberon def: "An artery that is part of a respiratory system [Obol]." [OBOL:automatic] xref: MA:0001804 is_a: UBERON:0001637 ! artery is_a: UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: UBERON:0003470 name: artery of upper lip namespace: uberon def: "An artery that is part of a upper lip [Obol]." [OBOL:automatic] xref: MA:0001917 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006913 ! lip epithelium [Term] id: UBERON:0003471 name: artery of lower lip namespace: uberon def: "An artery that is part of a lower lip [Obol]." [OBOL:automatic] xref: MA:0001916 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006913 ! lip epithelium [Term] id: UBERON:0003472 name: cerebellar artery namespace: uberon def: "An artery that is part of a cerebellum [Obol]." [OBOL:automatic] xref: EHDAA2:0000228 xref: EHDAA:5290 xref: MA:0001933 xref: SCTID:278102002 xref: ncithesaurus:Cerebellar_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0003499 ! brain blood vessel [Term] id: UBERON:0003473 name: thoracic cavity artery namespace: uberon def: "An artery that is part of a thoracic cavity[cjm]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376] comment: Note that in MA, aorta is classified here - but this is problematic because the abdominal aorta is not in the thoracic cavity xref: MA:0001902 is_a: UBERON:0001637 ! artery is_a: UBERON:0003519 ! thoracic cavity blood vessel [Term] id: UBERON:0003474 name: meningeal artery namespace: uberon def: "One of the arteries supplying the meninix[Obol]." [Wikipedia:Meningeal_arteries] xref: GAID:499 xref: MA:0002001 xref: MESH:A.07.231.114.545 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003475 name: ureteric vein namespace: uberon def: "A vein that is part of a ureter [Obol]." [OBOL:automatic] synonym: "ureter vein" EXACT [OBOL:automatic] synonym: "vein of ureter" EXACT [OBOL:automatic] xref: MA:0002250 is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel is_a: UBERON:0006555 ! excretory tube [Term] id: UBERON:0003476 name: respiratory system venous blood vessel namespace: uberon def: "A vein that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius vein" EXACT [OBOL:automatic] synonym: "respiratory system vein" EXACT [OBOL:automatic] synonym: "vein of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "vein of respiratory system" EXACT [OBOL:automatic] xref: MA:0001809 xref: MA:0001810 is_a: UBERON:0001638 ! vein is_a: UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0003477 name: vein of upper lip namespace: uberon def: "A vein that is part of a upper lip [Obol]." [OBOL:automatic] synonym: "upper lip vein" EXACT [OBOL:automatic] xref: MA:0002255 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006913 ! lip epithelium is_a: UBERON:0009141 ! craniocervical region vein [Term] id: UBERON:0003478 name: vein of lower lip namespace: uberon def: "A vein that is part of a lower lip [Obol]." [OBOL:automatic] synonym: "lower lip vein" EXACT [OBOL:automatic] xref: MA:0002253 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006913 ! lip epithelium is_a: UBERON:0009141 ! craniocervical region vein [Term] id: UBERON:0003479 name: thoracic cavity vein namespace: uberon def: "A vein that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "cavity of chest vein" EXACT [OBOL:automatic] synonym: "cavity of thorax vein" EXACT [OBOL:automatic] synonym: "chest cavity vein" EXACT [OBOL:automatic] synonym: "pectoral cavity vein" EXACT [OBOL:automatic] synonym: "vein of cavity of chest" EXACT [OBOL:automatic] synonym: "vein of cavity of thorax" EXACT [OBOL:automatic] synonym: "vein of chest cavity" EXACT [OBOL:automatic] synonym: "vein of pectoral cavity" EXACT [OBOL:automatic] synonym: "vein of thoracic cavity" EXACT [OBOL:automatic] xref: MA:0001903 is_a: UBERON:0003519 ! thoracic cavity blood vessel is_a: UBERON:0005194 ! thoracic vein [Term] id: UBERON:0003480 name: vein of clitoris namespace: uberon def: "A vein that is part of a clitoris [Obol]." [OBOL:automatic] synonym: "clitoris vein" EXACT [OBOL:automatic] xref: MA:0002252 xref: SCTID:360819004 is_a: UBERON:0001638 ! vein is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0003481 name: tail vein namespace: uberon def: "A vein that is part of a tail [Obol]." [OBOL:automatic] synonym: "post-vent region vein" EXACT [OBOL:automatic] synonym: "vein of post-vent region" EXACT [OBOL:automatic] synonym: "vein of tail" EXACT [OBOL:automatic] xref: AAO:0011105 xref: MA:0002233 xref: XAO:0000393 is_a: UBERON:0001638 ! vein is_a: UBERON:0003524 ! tail blood vessel relationship: develops_from UBERON:0001919 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! endothelium of vein [Term] id: UBERON:0003482 name: vein of trabecular bone namespace: uberon def: "A portion of vein that is part of a trabecular bone tissue [Obol]." [OBOL:automatic] synonym: "spongy bone vein" EXACT [OBOL:automatic] synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic] synonym: "trabecular bone vein" EXACT [OBOL:automatic] synonym: "vein of spongy bone" EXACT [OBOL:automatic] synonym: "vein of trabecular bone tissue" EXACT [OBOL:automatic] xref: MA:0002254 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003483 name: thymus lymphoid tissue namespace: uberon def: "A portion of lymphoid tissue that is part of a thymus [Obol]." [OBOL:automatic] synonym: "lymphatic tissue of thymus" EXACT [OBOL:automatic] synonym: "lymphatic tissue of thymus gland" EXACT [OBOL:automatic] synonym: "lymphocytic tissue of thymus" EXACT [OBOL:automatic] synonym: "lymphocytic tissue of thymus gland" EXACT [OBOL:automatic] synonym: "lymphoid tissue of thymus" EXACT [OBOL:automatic] synonym: "lymphoid tissue of thymus gland" EXACT [OBOL:automatic] synonym: "thymic lymphocytic tissue" EXACT [OBOL:automatic] synonym: "thymus gland lymphatic tissue" EXACT [OBOL:automatic] synonym: "thymus gland lymphocytic tissue" EXACT [OBOL:automatic] synonym: "thymus gland lymphoid tissue" EXACT [OBOL:automatic] synonym: "thymus lymphatic tissue" EXACT [OBOL:automatic] synonym: "thymus lymphocytic tissue" EXACT [OBOL:automatic] xref: MA:0002673 xref: MESH:A.06.407.850 xref: ncithesaurus:Thymic_Lymphoid_Tissue is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001744 ! lymphoid tissue [Term] id: UBERON:0003484 name: eye sebaceous gland namespace: uberon def: "A sebaceous gland that is part of a camera-type eye [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic] synonym: "sebaceous gland of vertebrate eye" EXACT [OBOL:automatic] synonym: "vertebrate eye sebaceous gland" EXACT [OBOL:automatic] xref: MA:0002452 is_a: UBERON:0001821 ! sebaceous gland is_a: UBERON:0004859 ! eye gland is_a: UBERON:0003487 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! skin sebaceous gland is_a: UBERON:0003605 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! eye skin gland [Term] id: UBERON:0003485 name: vagina sebaceous gland namespace: uberon def: "A sebaceous gland that is part of a vagina [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic] xref: MA:0001732 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001821 ! sebaceous gland is_a: UBERON:0005398 ! female reproductive gland [Term] id: UBERON:0003486 name: mammary gland sebaceous gland namespace: uberon def: "A sebaceous gland that is part of a lactiferous gland [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "lactiferous gland sebaceous gland" EXACT [OBOL:automatic] synonym: "lobe of breast sebaceous gland" EXACT [OBOL:automatic] synonym: "lobe of mammary gland sebaceous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of lactiferous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of lobe of breast" EXACT [OBOL:automatic] synonym: "sebaceous gland of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of mammary gland" EXACT [OBOL:automatic] xref: MA:0000794 is_a: UBERON:0001821 ! sebaceous gland [Term] id: UBERON:0003487 name: skin sebaceous gland namespace: uberon def: "the holocrine glands of the dermis that secrete sebum into the hair follicles." [MP:0009535] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "sebaceous gland of skin" EXACT [OBOL:automatic] xref: MA:0000149 xref: MESH:A.10.336.827 is_a: UBERON:0001821 ! sebaceous gland is_a: UBERON:0002419 ! skin gland [Term] id: UBERON:0003488 name: abdominal mammary gland namespace: uberon def: "A lactiferous gland that is part of the abdominal region [Obol]." [OBOL:automatic] comment: Taxon notes: Female mice normally have five pairs of nipples and mammary glands, three in the thoracic and two in the abdominal region. (There is an additional abdominal pair in female rats.) http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml synonym: "abdomen lactiferous gland" EXACT [OBOL:automatic] synonym: "abdomen lobe of breast" EXACT [OBOL:automatic] synonym: "abdomen lobe of mammary gland" EXACT [OBOL:automatic] synonym: "abdomen mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland of abdomen" EXACT [OBOL:automatic] synonym: "lobe of breast of abdomen" EXACT [OBOL:automatic] synonym: "lobe of mammary gland of abdomen" EXACT [OBOL:automatic] synonym: "mammary gland of abdomen" EXACT [OBOL:automatic] xref: MA:0000787 is_a: UBERON:0001911 ! mammary gland is_a: UBERON:0005172 ! abdomen organ [Term] id: UBERON:0003489 name: respiratory system capillary endothelium namespace: uberon def: "An endothelium of capillary that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary endothelium" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary vessel" EXACT [OBOL:automatic] xref: MA:0001808 is_a: UBERON:0001915 ! endothelium of capillary is_a: UBERON:0004702 ! respiratory system blood vessel endothelium relationship: part_of UBERON:0003526 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! respiratory system capillary [Term] id: UBERON:0003490 name: respiratory system reticular lamina namespace: uberon def: "A reticular lamina that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius fibroreticular lamina" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "apparatus respiratorius reticular lamina" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of respiratory system" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system fibroreticular lamina" EXACT [OBOL:automatic] synonym: "respiratory system lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "reticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "reticular lamina of respiratory system" EXACT [OBOL:automatic] xref: MA:0001817 is_a: UBERON:0001967 ! reticular lamina [Term] id: UBERON:0003492 name: bronchus reticular lamina namespace: uberon def: "A reticular lamina that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchi lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "bronchi reticular lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "bronchial trunk reticular lamina" EXACT [OBOL:automatic] synonym: "bronchus fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchus lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchi" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchus" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchi" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchus" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchi" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic] xref: MA:0001834 is_a: UBERON:0003490 ! respiratory system reticular lamina is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0009652 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! bronchus basement membrane [Term] id: UBERON:0003493 name: trachea reticular lamina namespace: uberon def: "A reticular lamina that is part of a trachea [Obol]." [OBOL:automatic] synonym: "fibroreticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of windpipe" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of windpipe" EXACT [OBOL:automatic] synonym: "reticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "reticular lamina of windpipe" EXACT [OBOL:automatic] synonym: "windpipe fibroreticular lamina" EXACT [OBOL:automatic] synonym: "windpipe lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "windpipe reticular lamina" EXACT [OBOL:automatic] xref: MA:0001856 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003490 ! respiratory system reticular lamina relationship: part_of UBERON:0009653 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! trachea basement membrane [Term] id: UBERON:0003494 name: respiratory system venule namespace: uberon def: "A venule that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic] synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venule of respiratory system" EXACT [OBOL:automatic] xref: MA:0001813 is_a: UBERON:0001979 ! venule is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003476 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! respiratory system venous blood vessel [Term] id: UBERON:0003495 name: respiratory system arteriole namespace: uberon def: "An arteriole that is part of a respiratory system [Obol]." [OBOL:automatic] xref: MA:0001803 is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: UBERON:0003496 name: head blood vessel namespace: uberon def: "A blood vessel that is part of a head [Obol]." [OBOL:automatic] synonym: "adult head blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of adult head" EXACT [OBOL:automatic] synonym: "blood vessel of head" EXACT [OBOL:automatic] xref: MA:0000575 xref: SCTID:127865000 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003497 name: abdomen blood vessel namespace: uberon def: "A blood vessel that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "blood vessel of abdomen" EXACT [OBOL:automatic] xref: MA:0000518 is_a: UBERON:0003835 ! abdominal segment blood vessel [Term] id: UBERON:0003498 name: heart blood vessel namespace: uberon def: "A blood vessel that is part of a heart [Obol]." [OBOL:automatic] synonym: "blood vessel of heart" EXACT [OBOL:automatic] xref: MA:0002483 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0005985 ! coronary vessel [Term] id: UBERON:0003499 name: brain blood vessel namespace: uberon def: "A blood vessel that is part of a brain [Obol]." [OBOL:automatic] synonym: "blood vessel of brain" EXACT [OBOL:automatic] xref: MA:0002769 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003496 ! head blood vessel [Term] id: UBERON:0003500 name: corneal blood vessel namespace: uberon def: "A blood vessel that is part of a cornea [Obol]." [OBOL:automatic] synonym: "blood vessel of cornea" EXACT [OBOL:automatic] synonym: "cornea blood vessel" EXACT [OBOL:automatic] xref: MA:0001241 is_a: UBERON:0001772 ! corneal epithelium is_a: UBERON:0003496 ! head blood vessel [Term] id: UBERON:0003501 name: retina blood vessel namespace: uberon def: "A blood vessel that is part of a retina [Obol]." [OBOL:automatic] synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic] synonym: "blood vessel of retina" EXACT [OBOL:automatic] synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic] synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic] synonym: "retinal blood vessel" EXACT [OBOL:automatic] synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic] xref: GAID:509 xref: MA:0001317 xref: MESH:A.07.231.611 xref: SCTID:280692003 xref: XAO:0004153 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0004864 ! vasculature of retina [Term] id: UBERON:0003502 name: neck blood vessel namespace: uberon def: "A blood vessel that is part of a neck [Obol]." [OBOL:automatic] synonym: "blood vessel of neck" EXACT [OBOL:automatic] synonym: "blood vessel of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) blood vessel" EXACT [OBOL:automatic] xref: MA:0000583 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003503 name: leg blood vessel namespace: uberon def: "A blood vessel that is part of a leg [Obol]." [OBOL:automatic] synonym: "blood vessel of leg" EXACT [OBOL:automatic] xref: MA:0000669 is_a: UBERON:0003516 ! hindlimb blood vessel [Term] id: UBERON:0003504 name: respiratory system blood vessel namespace: uberon def: "A blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic] xref: MA:0001799 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0004807 ! respiratory system epithelium [Term] id: UBERON:0003505 name: trachea blood vessel namespace: uberon alt_id: UBERON:0003525 synonym: "blood vessel of trachea" EXACT [OBOL:automatic] xref: MA:0001852 is_a: UBERON:0000117 ! respiratory tube is_a: UBERON:0001901 ! epithelium of trachea is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003519 ! thoracic cavity blood vessel [Term] id: UBERON:0003506 name: chest blood vessel namespace: uberon def: "A blood vessel that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region blood vessel" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anterior thoracic region" EXACT [OBOL:automatic] synonym: "blood vessel of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "blood vessel of chest" EXACT [OBOL:automatic] synonym: "blood vessel of front of thorax" EXACT [OBOL:automatic] synonym: "front of thorax blood vessel" EXACT [OBOL:automatic] xref: MA:0000549 is_a: UBERON:0003834 ! thoracic segment blood vessel [Term] id: UBERON:0003507 name: arm blood vessel namespace: uberon def: "A blood vessel that is part of an arm [Obol]." [OBOL:automatic] synonym: "blood vessel of arm" EXACT [OBOL:automatic] synonym: "blood vessel of brachial region" EXACT [OBOL:automatic] synonym: "blood vessel of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region blood vessel" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic] xref: MA:0000591 is_a: UBERON:0003515 ! forelimb blood vessel [Term] id: UBERON:0003508 name: foot digit blood vessel namespace: uberon def: "A blood vessel that is part of a toe [Obol]." [OBOL:automatic] synonym: "blood vessel of digit of foot" EXACT [OBOL:automatic] synonym: "blood vessel of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "blood vessel of digitus pedis" EXACT [OBOL:automatic] synonym: "blood vessel of foot digit" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "blood vessel of toe" EXACT [OBOL:automatic] synonym: "digit of foot blood vessel" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic] synonym: "digitus pedis blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit blood vessel" EXACT [OBOL:automatic] synonym: "toe blood vessel" EXACT [OBOL:automatic] xref: MA:0000645 is_a: UBERON:0003521 ! foot blood vessel is_a: UBERON:0005226 ! foot digit epithelium [Term] id: UBERON:0003509 name: arterial blood vessel namespace: uberon def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [UBERON:cjm] comment: only in MA - supertype of artery, arteriole, aorta. xref: MA:0000061 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003510 name: eyelid blood vessel namespace: uberon def: "A blood vessel that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of blepharon" EXACT [OBOL:automatic] synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] xref: MA:0001250 is_a: UBERON:0003496 ! head blood vessel [Term] id: UBERON:0003511 name: iris blood vessel namespace: uberon def: "A blood vessel that is part of a iris [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "blood vessel of iris" EXACT [OBOL:automatic] xref: MA:0001290 xref: ZFA:0005568 is_a: UBERON:0002506 ! iris epithelium is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:0004118 ! vasculature of iris [Term] id: UBERON:0003512 name: lung blood vessel namespace: uberon def: "A blood vessel that is part of a lung [Obol]." [OBOL:automatic] synonym: "blood vessel of lung" EXACT [OBOL:automatic] xref: MA:0002457 is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003519 ! thoracic cavity blood vessel [Term] id: UBERON:0003513 name: trunk blood vessel namespace: uberon def: "A blood vessel that is part of a trunk [Obol]." [OBOL:automatic] synonym: "blood vessel of torso" EXACT [OBOL:automatic] synonym: "blood vessel of trunk" EXACT [OBOL:automatic] synonym: "torso blood vessel" EXACT [OBOL:automatic] xref: MA:0000511 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003514 name: limb blood vessel namespace: uberon def: "A blood vessel that is part of a limb [Obol]." [OBOL:automatic] synonym: "blood vessel of limb" EXACT [OBOL:automatic] xref: MA:0000687 is_a: UBERON:0007301 ! limb/fin blood vessel [Term] id: UBERON:0003515 name: forelimb blood vessel namespace: uberon def: "A blood vessel that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anteriormost limb" EXACT [OBOL:automatic] synonym: "blood vessel of fore limb" EXACT [OBOL:automatic] synonym: "blood vessel of forelimb" EXACT [OBOL:automatic] synonym: "blood vessel of superior member" EXACT [OBOL:automatic] synonym: "blood vessel of upper extremity" EXACT [OBOL:automatic] synonym: "fore limb blood vessel" EXACT [OBOL:automatic] synonym: "superior member blood vessel" EXACT [OBOL:automatic] synonym: "upper extremity blood vessel" EXACT [OBOL:automatic] xref: MA:0000611 is_a: UBERON:0003514 ! limb blood vessel is_a: UBERON:0007300 ! fore limb/fin blood vessel [Term] id: UBERON:0003516 name: hindlimb blood vessel namespace: uberon def: "A blood vessel that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "blood vessel of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of inferior member" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb blood vessel" EXACT [OBOL:automatic] synonym: "inferior member blood vessel" EXACT [OBOL:automatic] synonym: "lower extremity blood vessel" EXACT [OBOL:automatic] xref: MA:0000659 is_a: UBERON:0003514 ! limb blood vessel [Term] id: UBERON:0003517 name: kidney blood vessel namespace: uberon def: "A blood vessel that is part of a kidney [Obol]." [OBOL:automatic] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "blood vessel of kidney" EXACT [OBOL:automatic] synonym: "renal blood vessel" EXACT [OBOL:automatic] xref: MA:0001682 xref: ZFA:0005306 is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0006544 ! kidney vasculature [Term] id: UBERON:0003518 name: main bronchus blood vessel namespace: uberon def: "A blood vessel that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic] synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of principal bronchus" EXACT [OBOL:automatic] synonym: "bronchus principalis blood vessel" EXACT [OBOL:automatic] synonym: "primary bronchus blood vessel" EXACT [OBOL:automatic] synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic] xref: MA:0001844 is_a: UBERON:0000117 ! respiratory tube is_a: UBERON:0002340 ! epithelium of main bronchus is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003519 ! thoracic cavity blood vessel [Term] id: UBERON:0003519 name: thoracic cavity blood vessel namespace: uberon def: "A blood vessel that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "blood vessel of cavity of chest" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of thorax" EXACT [OBOL:automatic] synonym: "blood vessel of chest cavity" EXACT [OBOL:automatic] synonym: "blood vessel of pectoral cavity" EXACT [OBOL:automatic] synonym: "blood vessel of thoracic cavity" EXACT [OBOL:automatic] synonym: "cavity of chest blood vessel" EXACT [OBOL:automatic] synonym: "cavity of thorax blood vessel" EXACT [OBOL:automatic] synonym: "chest cavity blood vessel" EXACT [OBOL:automatic] synonym: "pectoral cavity blood vessel" EXACT [OBOL:automatic] xref: MA:0000554 is_a: UBERON:0003834 ! thoracic segment blood vessel [Term] id: UBERON:0003520 name: pelvis blood vessel namespace: uberon def: "A blood vessel that is part of a pelvis [Obol]." [OBOL:automatic] synonym: "blood vessel of pelvis" EXACT [OBOL:automatic] xref: MA:0000531 is_a: UBERON:0003835 ! abdominal segment blood vessel [Term] id: UBERON:0003521 name: foot blood vessel namespace: uberon def: "A blood vessel that is part of a foot [Obol]." [OBOL:automatic] synonym: "autopod of hind limb blood vessel" EXACT [OBOL:automatic] synonym: "autopod of hindlimb blood vessel" EXACT [OBOL:automatic] synonym: "autopod of inferior member blood vessel" EXACT [OBOL:automatic] synonym: "autopod of lower extremity blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of inferior member" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "blood vessel of foot" EXACT [OBOL:automatic] synonym: "blood vessel of hind limb autopod" EXACT [OBOL:automatic] synonym: "blood vessel of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb autopod" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of inferior member autopod" EXACT [OBOL:automatic] synonym: "blood vessel of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity autopod" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity blood vessel" EXACT [OBOL:automatic] synonym: "hind limb autopod blood vessel" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "hindlimb autopod blood vessel" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "inferior member autopod blood vessel" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "lower extremity autopod blood vessel" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic] xref: MA:0000642 is_a: UBERON:0003516 ! hindlimb blood vessel [Term] id: UBERON:0003522 name: hand digit blood vessel namespace: uberon def: "A blood vessel that is part of a finger [Obol]." [OBOL:automatic] synonym: "blood vessel of digit of hand" EXACT [OBOL:automatic] synonym: "blood vessel of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of digitus manus" EXACT [OBOL:automatic] synonym: "blood vessel of finger" EXACT [OBOL:automatic] synonym: "blood vessel of hand digit" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "digit of hand blood vessel" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic] synonym: "digitus manus blood vessel" EXACT [OBOL:automatic] synonym: "finger blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit blood vessel" EXACT [OBOL:automatic] xref: MA:0000621 is_a: UBERON:0003523 ! hand blood vessel is_a: UBERON:0005227 ! hand digit epithelium [Term] id: UBERON:0003523 name: hand blood vessel namespace: uberon def: "A blood vessel that is part of a hand [Obol]." [OBOL:automatic] synonym: "arm autopod blood vessel" EXACT [OBOL:automatic] synonym: "arm distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "autopod of arm blood vessel" EXACT [OBOL:automatic] synonym: "autopod of brachial region blood vessel" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of arm autopod" EXACT [OBOL:automatic] synonym: "blood vessel of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of arm" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of brachial region" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of brachial region autopod" EXACT [OBOL:automatic] synonym: "blood vessel of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of hand" EXACT [OBOL:automatic] synonym: "blood vessel of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "blood vessel of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region autopod blood vessel" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod blood vessel" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic] xref: MA:0000618 is_a: UBERON:0003515 ! forelimb blood vessel [Term] id: UBERON:0003524 name: tail blood vessel namespace: uberon def: "A blood vessel that is part of a tail [Obol]." [OBOL:automatic] synonym: "blood vessel of post-vent region" EXACT [OBOL:automatic] synonym: "blood vessel of tail" EXACT [OBOL:automatic] synonym: "post-vent region blood vessel" EXACT [OBOL:automatic] xref: MA:0000695 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003526 name: respiratory system capillary namespace: uberon def: "A capillary that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel" EXACT [OBOL:automatic] xref: MA:0001807 is_a: UBERON:0001982 ! capillary is_a: UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0003527 name: kidney capillary namespace: uberon def: "A capillary that is part of a kidney [Obol]." [OBOL:automatic] synonym: "blood capillary of kidney" EXACT [OBOL:automatic] synonym: "capillary of kidney" EXACT [OBOL:automatic] synonym: "capillary vessel of kidney" EXACT [OBOL:automatic] synonym: "kidney blood capillary" EXACT [OBOL:automatic] synonym: "kidney capillary vessel" EXACT [OBOL:automatic] synonym: "renal capillary" EXACT [OBOL:automatic] xref: EMAPA:31443 xref: MA:0002586 xref: SCTID:275409003 is_a: UBERON:0001982 ! capillary is_a: UBERON:0003517 ! kidney blood vessel [Term] id: UBERON:0003528 name: brain grey matter namespace: uberon def: "A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic] synonym: "brain gray matter" EXACT [OBOL:automatic] synonym: "brain gray matter of neuraxis" EXACT [OBOL:automatic] synonym: "brain grey substance" EXACT [OBOL:automatic] synonym: "gray matter of brain" EXACT [OBOL:automatic] synonym: "gray matter of neuraxis of brain" EXACT [OBOL:automatic] synonym: "grey matter of brain" EXACT [OBOL:automatic] synonym: "grey substance of brain" EXACT [OBOL:automatic] xref: MA:0000810 xref: ncithesaurus:Cerebral_Gray_Matter is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0003529 name: respiratory system lymphatic vessel endothelium namespace: uberon def: "An endothelium of lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of lymphatic vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of lymphatic vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of lymphatic vessel" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel endothelium" EXACT [OBOL:automatic] xref: MA:0001825 is_a: UBERON:0002042 ! endothelium of lymphatic vessel is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel [Term] id: UBERON:0003530 name: foot digit skin namespace: uberon def: "A zone of skin that is part of a toe [Obol]." [OBOL:automatic] synonym: "digit of foot skin" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb skin" EXACT [OBOL:automatic] synonym: "digitus pedis skin" EXACT [OBOL:automatic] synonym: "skin of digit of foot" EXACT [OBOL:automatic] synonym: "skin of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "skin of digitus pedis" EXACT [OBOL:automatic] synonym: "skin of foot digit" EXACT [OBOL:automatic] synonym: "skin of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "skin of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit skin" EXACT [OBOL:automatic] synonym: "toe skin" EXACT [OBOL:automatic] xref: FMA:37852 xref: MA:0000650 xref: SCTID:181530005 xref: ncithesaurus:Foot_Digit_Skin is_a: UBERON:0001513 ! skin of foot [Term] id: UBERON:0003531 name: forelimb skin namespace: uberon def: "A zone of skin that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb skin" EXACT [OBOL:automatic] synonym: "fore limb skin" EXACT [OBOL:automatic] synonym: "skin of anteriormost limb" EXACT [OBOL:automatic] synonym: "skin of fore limb" EXACT [OBOL:automatic] synonym: "skin of forelimb" EXACT [OBOL:automatic] synonym: "skin of superior member" EXACT [OBOL:automatic] synonym: "skin of upper extremity" EXACT [OBOL:automatic] synonym: "skin of upper limb" EXACT [FMA:23101] synonym: "superior member skin" EXACT [OBOL:automatic] synonym: "upper extremity skin" EXACT [OBOL:automatic] synonym: "upper limb skin" EXACT [FMA:23101] xref: FMA:23101 xref: MA:0000617 xref: SCTID:244130001 is_a: UBERON:0001419 ! skin of limb [Term] id: UBERON:0003532 name: hindlimb skin namespace: uberon def: "A zone of skin that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] synonym: "inferior member skin" EXACT [OBOL:automatic] synonym: "lower extremity skin" EXACT [OBOL:automatic] synonym: "lower limb skin" EXACT [FMA:23102] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of inferior member" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] synonym: "skin of lower limb" EXACT [FMA:23102] xref: FMA:23102 xref: MA:0000665 xref: SCTID:181528008 is_a: UBERON:0001419 ! skin of limb [Term] id: UBERON:0003533 name: hand digit skin namespace: uberon def: "A zone of skin that is part of a finger [Obol]." [OBOL:automatic] synonym: "digit of hand skin" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "digitus manus skin" EXACT [OBOL:automatic] synonym: "finger skin" EXACT [OBOL:automatic] synonym: "skin of digit of hand" EXACT [OBOL:automatic] synonym: "skin of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of digitus manus" EXACT [OBOL:automatic] synonym: "skin of finger" EXACT [OBOL:automatic] synonym: "skin of hand digit" EXACT [OBOL:automatic] synonym: "skin of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit skin" EXACT [OBOL:automatic] xref: FMA:38304 xref: MA:0000626 xref: SCTID:361711001 xref: ncithesaurus:Hand_Digit_Skin is_a: UBERON:0001519 ! skin of hand [Term] id: UBERON:0003534 name: tail skin namespace: uberon def: "A zone of skin that is part of a tail [Obol]." [OBOL:automatic] synonym: "post-vent region skin" EXACT [OBOL:automatic] synonym: "skin of post-vent region" EXACT [OBOL:automatic] synonym: "skin of tail" EXACT [OBOL:automatic] xref: MA:0000700 xref: SCTID:67214004 is_a: UBERON:0000014 ! zone of skin [Term] id: UBERON:0003535 name: vagus X nerve trunk namespace: uberon xref: FMA:6221 xref: MA:0001150 xref: SCTID:280308004 is_a: UBERON:0002464 ! nerve trunk is_a: UBERON:0004293 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! parasympathetic nerve [Term] id: UBERON:0003536 name: right lung alveolar duct namespace: uberon def: "An alveolar duct that is part of a right lung [Obol]." [OBOL:automatic] synonym: "alveolar duct of right lung" EXACT [OBOL:automatic] xref: EMAPA:19185 xref: EMAPA:19187 xref: EMAPA:19189 xref: EMAPA:19191 xref: MA:0001785 xref: ncithesaurus:Right_Lung_Alveolar_Duct is_a: UBERON:0002173 ! alveolar duct relationship: part_of UBERON:0006526 ! right lung alveolar system [Term] id: UBERON:0003537 name: left lung alveolar duct namespace: uberon def: "An alveolar duct that is part of a left lung [Obol]." [OBOL:automatic] synonym: "alveolar duct of left lung" EXACT [OBOL:automatic] xref: EMAPA:19183 xref: MA:0001776 xref: ncithesaurus:Left_Lung_Alveolar_Duct is_a: UBERON:0002173 ! alveolar duct relationship: part_of UBERON:0006525 ! left lung alveolar system [Term] id: UBERON:0003538 name: right lung bronchiole namespace: uberon def: "A bronchiole that is part of a right lung [Obol]." [OBOL:automatic] synonym: "bronchiole of right lung" EXACT [OBOL:automatic] synonym: "lobular bronchiole of right lung" EXACT [OBOL:automatic] synonym: "right lung lobular bronchiole" EXACT [OBOL:automatic] xref: EMAPA:19002 xref: EMAPA:19004 xref: EMAPA:19006 xref: EMAPA:19008 xref: MA:0001787 xref: SCTID:200089000 xref: ncithesaurus:Right_Lung_Bronchiole is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0003539 name: left lung bronchiole namespace: uberon def: "A bronchiole that is part of a left lung [Obol]." [OBOL:automatic] synonym: "bronchiole of left lung" EXACT [OBOL:automatic] synonym: "left lung lobular bronchiole" EXACT [OBOL:automatic] synonym: "lobular bronchiole of left lung" EXACT [OBOL:automatic] xref: EMAPA:19000 xref: MA:0001778 xref: SCTID:200484003 xref: ncithesaurus:Left_Lung_Bronchiole is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0003540 name: right lung terminal bronchiole namespace: uberon def: "A terminal bronchiole that is part of a right lung [Obol]." [OBOL:automatic] synonym: "bronchiolus terminalis of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of right lung" EXACT [OBOL:automatic] xref: MA:0001789 xref: ncithesaurus:Right_Lung_Terminal_Bronchiole is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003538 ! right lung bronchiole [Term] id: UBERON:0003541 name: left lung terminal bronchiole namespace: uberon def: "A terminal bronchiole that is part of a left lung [Obol]." [OBOL:automatic] synonym: "bronchiolus terminalis of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of left lung" EXACT [OBOL:automatic] xref: MA:0001780 xref: ncithesaurus:Left_Lung_Terminal_Bronchiole is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003539 ! left lung bronchiole [Term] id: UBERON:0003542 name: right lung respiratory bronchiole namespace: uberon def: "A respiratory bronchiole that is part of a right lung [Obol]." [OBOL:automatic] synonym: "bronchiolus respiratorius of right lung" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus respiratorius" EXACT [OBOL:automatic] xref: MA:0001788 xref: ncithesaurus:Right_Lung_Respiratory_Bronchiole is_a: UBERON:0002188 ! respiratory bronchiole is_a: UBERON:0003538 ! right lung bronchiole [Term] id: UBERON:0003543 name: left lung respiratory bronchiole namespace: uberon def: "A respiratory bronchiole that is part of a left lung [Obol]." [OBOL:automatic] synonym: "bronchiolus respiratorius of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of left lung" EXACT [OBOL:automatic] xref: MA:0001779 xref: ncithesaurus:Left_Lung_Respiratory_Bronchiole is_a: UBERON:0002188 ! respiratory bronchiole is_a: UBERON:0003539 ! left lung bronchiole [Term] id: UBERON:0003544 name: brain white matter namespace: uberon def: "the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] synonym: "brain white matter of neuraxis" EXACT [OBOL:automatic] synonym: "brain white substance" EXACT [OBOL:automatic] synonym: "white matter of brain" EXACT [OBOL:automatic] synonym: "white matter of neuraxis of brain" EXACT [OBOL:automatic] synonym: "white substance of brain" EXACT [OBOL:automatic] xref: MA:0000820 xref: ncithesaurus:Brain_White_Matter is_a: UBERON:0002316 ! white matter is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0003545 name: brainstem white matter namespace: uberon is_obsolete: true comment: obsoleted as definition is unclear. cerebellar peduncle originally classified here but in ABA brainstem and cerbellum are spatially disjoint xref: MA:0002741 [Term] id: UBERON:0003546 name: distal convoluted tubule macula densa namespace: uberon def: "A macula densa that is part of a distal convoluted tubule [Obol]." [OBOL:automatic] xref: MA:0001668 is_a: UBERON:0002335 ! macula densa relationship: part_of UBERON:0001292 ! distal convoluted tubule relationship: part_of UBERON:0002335 ! macula densa [Term] id: UBERON:0003547 name: brain meninx namespace: uberon def: "A meninx that is part of a brain [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "brain meninges" EXACT [OBOL:automatic] synonym: "meninges of brain" EXACT [OBOL:automatic] synonym: "meninx of brain" EXACT [OBOL:automatic] xref: EV:0100312 xref: MA:0000813 xref: VHOG:0000013 is_a: UBERON:0002360 ! meninx is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0003548 name: forebrain meninges namespace: uberon def: "A meninx that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "forebrain meninx" EXACT [OBOL:automatic] synonym: "meninges of forebrain" EXACT [OBOL:automatic] synonym: "meninx of forebrain" EXACT [OBOL:automatic] xref: EMAPA:17764 xref: EMAPA:17774 xref: MA:0000883 is_a: UBERON:0002780 ! regional part of forebrain is_a: UBERON:0003547 ! brain meninx [Term] id: UBERON:0003549 name: brain pia mater namespace: uberon def: "the fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule." [MP:0009026] synonym: "brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of brain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of brain" EXACT [OBOL:automatic] xref: EV:0100315 xref: MA:0000816 xref: VHOG:0000470 xref: ncithesaurus:Brain_Pia_Mater is_a: UBERON:0002361 ! pia mater is_a: UBERON:0003547 ! brain meninx [Term] id: UBERON:0003550 name: forebrain pia mater namespace: uberon def: "A pia mater that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "forebrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of forebrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of forebrain" EXACT [OBOL:automatic] xref: EMAPA:17767 xref: EMAPA:17777 xref: MA:0000886 is_a: UBERON:0003548 ! forebrain meninges is_a: UBERON:0003549 ! brain pia mater [Term] id: UBERON:0003551 name: midbrain pia mater namespace: uberon def: "A pia mater that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "midbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of midbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of midbrain" EXACT [OBOL:automatic] xref: EHDAA2:0001175 xref: EMAPA:17794 xref: MA:0001061 xref: RETIRED_EHDAA2:0001110 xref: VHOG:0000467 is_a: UBERON:0003288 ! meninx of midbrain is_a: UBERON:0003549 ! brain pia mater [Term] id: UBERON:0003552 name: telencephalon pia mater namespace: uberon def: "A pia mater that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "pia mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "pia mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon pia mater of neuraxis" EXACT [OBOL:automatic] xref: EHDAA2:0001992 xref: EMAPA:17777 xref: MA:0000982 xref: VHOG:0000476 is_a: UBERON:0003289 ! meninx of telencephalon is_a: UBERON:0003550 ! forebrain pia mater [Term] id: UBERON:0003553 name: diencephalon pia mater namespace: uberon def: "A pia mater that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain pia mater" EXACT [OBOL:automatic] synonym: "between brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "interbrain pia mater" EXACT [OBOL:automatic] synonym: "interbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon pia mater" EXACT [OBOL:automatic] synonym: "mature diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of between brain" EXACT [OBOL:automatic] synonym: "pia mater of diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of interbrain" EXACT [OBOL:automatic] synonym: "pia mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0000400 xref: EMAPA:17767 xref: MA:0000829 xref: VHOG:0000475 is_a: UBERON:0003290 ! meninx of diencephalon is_a: UBERON:0003550 ! forebrain pia mater [Term] id: UBERON:0003554 name: hindbrain pia mater namespace: uberon def: "A pia mater that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "hindbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of hindbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of hindbrain" EXACT [OBOL:automatic] xref: EHDAA2:0000772 xref: EMAPA:17786 xref: MA:0000990 xref: VHOG:0000466 is_a: UBERON:0003291 ! meninx of hindbrain is_a: UBERON:0003549 ! brain pia mater [Term] id: UBERON:0003555 name: spinal cord pia mater namespace: uberon def: "A pia mater that is part of a spinal cord [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "pia mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "pia mater of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord pia mater of neuraxis" EXACT [OBOL:automatic] xref: EHDAA2:0001896 xref: EMAPA:17807 xref: MA:0001133 xref: VHOG:0000468 xref: ncithesaurus:Spinal_Cord_Pia_Mater is_a: UBERON:0002361 ! pia mater is_a: UBERON:0003292 ! meninx of spinal cord [Term] id: UBERON:0003556 name: forebrain arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "arachnoid mater of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid of forebrain" EXACT [OBOL:automatic] synonym: "forebrain arachnoid" EXACT [OBOL:automatic] synonym: "forebrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17765 xref: EMAPA:17775 xref: MA:0000884 is_a: UBERON:0003548 ! forebrain meninges is_a: UBERON:0005397 ! brain arachnoid mater [Term] id: UBERON:0003557 name: midbrain arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "arachnoid mater of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid of midbrain" EXACT [OBOL:automatic] synonym: "midbrain arachnoid" EXACT [OBOL:automatic] synonym: "midbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17792 xref: MA:0001059 xref: VHOG:0000233 is_a: UBERON:0003288 ! meninx of midbrain is_a: UBERON:0005397 ! brain arachnoid mater [Term] id: UBERON:0003558 name: diencephalon arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "arachnoid mater of between brain" EXACT [OBOL:automatic] synonym: "arachnoid mater of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid of between brain" EXACT [OBOL:automatic] synonym: "arachnoid of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid of mature diencephalon" EXACT [OBOL:automatic] synonym: "between brain arachnoid" EXACT [OBOL:automatic] synonym: "between brain arachnoid mater" EXACT [OBOL:automatic] synonym: "between brain arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon arachnoid" EXACT [OBOL:automatic] synonym: "diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "interbrain arachnoid" EXACT [OBOL:automatic] synonym: "interbrain arachnoid mater" EXACT [OBOL:automatic] synonym: "interbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid mater" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17765 xref: MA:0000827 xref: VHOG:0000231 is_a: UBERON:0003290 ! meninx of diencephalon is_a: UBERON:0003556 ! forebrain arachnoid mater [Term] id: UBERON:0003559 name: hindbrain arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "arachnoid mater of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid of hindbrain" EXACT [OBOL:automatic] synonym: "hindbrain arachnoid" EXACT [OBOL:automatic] synonym: "hindbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17784 xref: MA:0000988 xref: VHOG:0000236 is_a: UBERON:0003291 ! meninx of hindbrain is_a: UBERON:0005397 ! brain arachnoid mater [Term] id: UBERON:0003560 name: spinal cord arachnoid mater namespace: uberon def: "An arachnoid mater that is part of a spinal cord [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "arachnoid mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "arachnoid mater of spinal cord" EXACT [OBOL:automatic] synonym: "arachnoid of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord arachnoid" EXACT [OBOL:automatic] synonym: "spinal cord arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17805 xref: MA:0001131 xref: VHOG:0000234 is_a: UBERON:0002362 ! arachnoid mater is_a: UBERON:0003292 ! meninx of spinal cord [Term] id: UBERON:0003561 name: forebrain dura mater namespace: uberon def: "A dura mater that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "dura mater of forebrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "forebrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17766 xref: MA:0000885 is_a: UBERON:0002092 ! cranial dura mater is_a: UBERON:0003548 ! forebrain meninges [Term] id: UBERON:0003562 name: midbrain dura mater namespace: uberon def: "A dura mater that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "dura mater of midbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "midbrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17793 xref: MA:0001060 xref: VHOG:0000410 is_a: UBERON:0002092 ! cranial dura mater is_a: UBERON:0003288 ! meninx of midbrain [Term] id: UBERON:0003563 name: telencephalon dura mater namespace: uberon def: "A dura mater that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "dura mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "dura mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon dura mater of neuraxis" EXACT [OBOL:automatic] xref: MA:0000981 is_a: UBERON:0003289 ! meninx of telencephalon is_a: UBERON:0003561 ! forebrain dura mater [Term] id: UBERON:0003564 name: diencephalon dura mater namespace: uberon def: "A dura mater that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain dura mater" EXACT [OBOL:automatic] synonym: "between brain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "dura mater of between brain" EXACT [OBOL:automatic] synonym: "dura mater of diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of interbrain" EXACT [OBOL:automatic] synonym: "dura mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain dura mater" EXACT [OBOL:automatic] synonym: "interbrain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon dura mater" EXACT [OBOL:automatic] synonym: "mature diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17766 xref: MA:0000828 xref: VHOG:0000258 is_a: UBERON:0003290 ! meninx of diencephalon is_a: UBERON:0003561 ! forebrain dura mater [Term] id: UBERON:0003565 name: hindbrain dura mater namespace: uberon def: "A dura mater that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "dura mater of hindbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "hindbrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17785 xref: MA:0000989 xref: VHOG:0000409 is_a: UBERON:0002092 ! cranial dura mater is_a: UBERON:0003291 ! meninx of hindbrain [Term] id: UBERON:0003566 name: head connective tissue namespace: uberon def: "A portion of connective tissue that is part of a head [Obol]." [OBOL:automatic] synonym: "adult head connective tissue" EXACT [OBOL:automatic] synonym: "adult head portion of connective tissue" EXACT [OBOL:automatic] synonym: "adult head textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of adult head" EXACT [OBOL:automatic] synonym: "connective tissue of head" EXACT [OBOL:automatic] synonym: "head portion of connective tissue" EXACT [OBOL:automatic] synonym: "head textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of adult head" EXACT [OBOL:automatic] synonym: "portion of connective tissue of head" EXACT [OBOL:automatic] synonym: "textus connectivus of adult head" EXACT [OBOL:automatic] synonym: "textus connectivus of head" EXACT [OBOL:automatic] xref: MA:0000577 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0003567 name: abdomen connective tissue namespace: uberon def: "A portion of connective tissue that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "abdomen portion of connective tissue" EXACT [OBOL:automatic] synonym: "abdomen textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of abdomen" EXACT [OBOL:automatic] synonym: "portion of connective tissue of abdomen" EXACT [OBOL:automatic] synonym: "textus connectivus of abdomen" EXACT [OBOL:automatic] xref: MA:0000519 is_a: UBERON:0003838 ! abdominal segment connective tissue [Term] id: UBERON:0003568 name: neck connective tissue namespace: uberon def: "A portion of connective tissue that is part of a neck [Obol]." [OBOL:automatic] synonym: "connective tissue of neck" EXACT [OBOL:automatic] synonym: "connective tissue of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) connective tissue" EXACT [OBOL:automatic] synonym: "neck (volume) portion of connective tissue" EXACT [OBOL:automatic] synonym: "neck (volume) textus connectivus" EXACT [OBOL:automatic] synonym: "neck portion of connective tissue" EXACT [OBOL:automatic] synonym: "neck textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of neck" EXACT [OBOL:automatic] synonym: "portion of connective tissue of neck (volume)" EXACT [OBOL:automatic] synonym: "textus connectivus of neck" EXACT [OBOL:automatic] synonym: "textus connectivus of neck (volume)" EXACT [OBOL:automatic] xref: MA:0000585 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0003569 name: leg connective tissue namespace: uberon def: "A portion of connective tissue that is part of a leg [Obol]." [OBOL:automatic] synonym: "connective tissue of leg" EXACT [OBOL:automatic] synonym: "leg portion of connective tissue" EXACT [OBOL:automatic] synonym: "leg textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of leg" EXACT [OBOL:automatic] synonym: "textus connectivus of leg" EXACT [OBOL:automatic] xref: MA:0000671 is_a: UBERON:0003589 ! hindlimb connective tissue [Term] id: UBERON:0003570 name: respiratory system connective tissue namespace: uberon def: "A portion of connective tissue that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "portion of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "portion of connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system portion of connective tissue" EXACT [OBOL:automatic] synonym: "respiratory system textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "textus connectivus of respiratory system" EXACT [OBOL:automatic] xref: MA:0001814 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0003571 name: trachea connective tissue namespace: uberon synonym: "connective tissue of trachea" EXACT [OBOL:automatic] synonym: "connective tissue of windpipe" EXACT [OBOL:automatic] synonym: "portion of connective tissue of trachea" EXACT [OBOL:automatic] synonym: "portion of connective tissue of windpipe" EXACT [OBOL:automatic] synonym: "textus connectivus of trachea" EXACT [OBOL:automatic] synonym: "textus connectivus of windpipe" EXACT [OBOL:automatic] synonym: "trachea portion of connective tissue" EXACT [OBOL:automatic] synonym: "trachea textus connectivus" EXACT [OBOL:automatic] synonym: "windpipe connective tissue" EXACT [OBOL:automatic] synonym: "windpipe portion of connective tissue" EXACT [OBOL:automatic] synonym: "windpipe textus connectivus" EXACT [OBOL:automatic] xref: MA:0001853 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0003593 ! thoracic cavity connective tissue [Term] id: UBERON:0003572 name: chest connective tissue namespace: uberon def: "A portion of connective tissue that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region connective tissue" EXACT [OBOL:automatic] synonym: "anterior thoracic region portion of connective tissue" EXACT [OBOL:automatic] synonym: "anterior thoracic region textus connectivus" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax connective tissue" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax textus connectivus" EXACT [OBOL:automatic] synonym: "chest portion of connective tissue" EXACT [OBOL:automatic] synonym: "chest textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of anterior thoracic region" EXACT [OBOL:automatic] synonym: "connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "connective tissue of chest" EXACT [OBOL:automatic] synonym: "connective tissue of front of thorax" EXACT [OBOL:automatic] synonym: "front of thorax connective tissue" EXACT [OBOL:automatic] synonym: "front of thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "front of thorax textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of anterior thoracic region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "portion of connective tissue of chest" EXACT [OBOL:automatic] synonym: "portion of connective tissue of front of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of anterior thoracic region" EXACT [OBOL:automatic] synonym: "textus connectivus of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of chest" EXACT [OBOL:automatic] synonym: "textus connectivus of front of thorax" EXACT [OBOL:automatic] xref: MA:0000550 is_a: UBERON:0003837 ! thoracic segment connective tissue [Term] id: UBERON:0003573 name: arm connective tissue namespace: uberon def: "A portion of connective tissue that is part of an arm [Obol]." [OBOL:automatic] synonym: "arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region connective tissue" EXACT [OBOL:automatic] synonym: "brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of arm" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: MA:0000593 is_a: UBERON:0003588 ! forelimb connective tissue [Term] id: UBERON:0003574 name: elbow connective tissue namespace: uberon def: "A portion of connective tissue that is part of a elbow [Obol]." [OBOL:automatic] synonym: "connective tissue of cubital region" EXACT [OBOL:automatic] synonym: "connective tissue of elbow" EXACT [OBOL:automatic] synonym: "cubital region connective tissue" EXACT [OBOL:automatic] synonym: "cubital region portion of connective tissue" EXACT [OBOL:automatic] synonym: "cubital region textus connectivus" EXACT [OBOL:automatic] synonym: "elbow portion of connective tissue" EXACT [OBOL:automatic] synonym: "elbow textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of cubital region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of elbow" EXACT [OBOL:automatic] synonym: "textus connectivus of cubital region" EXACT [OBOL:automatic] synonym: "textus connectivus of elbow" EXACT [OBOL:automatic] xref: MA:0000609 is_a: UBERON:0003573 ! arm connective tissue [Term] id: UBERON:0003575 name: wrist connective tissue namespace: uberon def: "A portion of connective tissue that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region connective tissue" EXACT [OBOL:automatic] synonym: "carpal region portion of connective tissue" EXACT [OBOL:automatic] synonym: "carpal region textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of carpal region" EXACT [OBOL:automatic] synonym: "connective tissue of wrist" EXACT [OBOL:automatic] synonym: "portion of connective tissue of carpal region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of wrist" EXACT [OBOL:automatic] synonym: "textus connectivus of carpal region" EXACT [OBOL:automatic] synonym: "textus connectivus of wrist" EXACT [OBOL:automatic] synonym: "wrist portion of connective tissue" EXACT [OBOL:automatic] synonym: "wrist textus connectivus" EXACT [OBOL:automatic] xref: MA:0000636 is_a: UBERON:0003588 ! forelimb connective tissue [Term] id: UBERON:0003576 name: hip connective tissue namespace: uberon def: "A portion of connective tissue that is part of a hip [Obol]." [OBOL:automatic] synonym: "connective tissue of hip" EXACT [OBOL:automatic] synonym: "connective tissue of hip region" EXACT [OBOL:automatic] synonym: "connective tissue of regio coxae" EXACT [OBOL:automatic] synonym: "hip portion of connective tissue" EXACT [OBOL:automatic] synonym: "hip region connective tissue" EXACT [OBOL:automatic] synonym: "hip region portion of connective tissue" EXACT [OBOL:automatic] synonym: "hip region textus connectivus" EXACT [OBOL:automatic] synonym: "hip textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hip" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hip region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae connective tissue" EXACT [OBOL:automatic] synonym: "regio coxae portion of connective tissue" EXACT [OBOL:automatic] synonym: "regio coxae textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of hip" EXACT [OBOL:automatic] synonym: "textus connectivus of hip region" EXACT [OBOL:automatic] synonym: "textus connectivus of regio coxae" EXACT [OBOL:automatic] xref: MA:0000656 is_a: UBERON:0003587 ! limb connective tissue is_a: UBERON:0003589 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hindlimb connective tissue [Term] id: UBERON:0003577 name: knee connective tissue namespace: uberon def: "A portion of connective tissue that is part of a knee [Obol]." [OBOL:automatic] synonym: "connective tissue of knee" EXACT [OBOL:automatic] synonym: "knee portion of connective tissue" EXACT [OBOL:automatic] synonym: "knee textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of knee" EXACT [OBOL:automatic] synonym: "textus connectivus of knee" EXACT [OBOL:automatic] xref: MA:0000667 is_a: UBERON:0003569 ! leg connective tissue [Term] id: UBERON:0003578 name: foot digit connective tissue namespace: uberon def: "A portion of connective tissue that is part of a toe [Obol]." [OBOL:automatic] synonym: "connective tissue of digit of foot" EXACT [OBOL:automatic] synonym: "connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "connective tissue of digitus pedis" EXACT [OBOL:automatic] synonym: "connective tissue of foot digit" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "connective tissue of toe" EXACT [OBOL:automatic] synonym: "digit of foot connective tissue" EXACT [OBOL:automatic] synonym: "digit of foot portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of foot textus connectivus" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic] synonym: "digitus pedis connective tissue" EXACT [OBOL:automatic] synonym: "digitus pedis portion of connective tissue" EXACT [OBOL:automatic] synonym: "digitus pedis textus connectivus" EXACT [OBOL:automatic] synonym: "foot digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "foot digit textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of foot" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digitus pedis" EXACT [OBOL:automatic] synonym: "portion of connective tissue of foot digit" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "portion of connective tissue of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of foot" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "textus connectivus of digitus pedis" EXACT [OBOL:automatic] synonym: "textus connectivus of foot digit" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "textus connectivus of toe" EXACT [OBOL:automatic] synonym: "toe connective tissue" EXACT [OBOL:automatic] synonym: "toe portion of connective tissue" EXACT [OBOL:automatic] synonym: "toe textus connectivus" EXACT [OBOL:automatic] xref: MA:0000647 is_a: UBERON:0003595 ! foot connective tissue [Term] id: UBERON:0003579 name: shoulder connective tissue namespace: uberon def: "A portion of connective tissue that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "connective tissue of shoulder" EXACT [OBOL:automatic] synonym: "portion of connective tissue of shoulder" EXACT [OBOL:automatic] synonym: "shoulder portion of connective tissue" EXACT [OBOL:automatic] synonym: "shoulder textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of shoulder" EXACT [OBOL:automatic] xref: MA:0000632 is_a: UBERON:0003588 ! forelimb connective tissue [Term] id: UBERON:0003580 name: lower respiratory tract connective tissue namespace: uberon def: "A portion of connective tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic] synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic] xref: MA:0002409 is_a: UBERON:0003570 ! respiratory system connective tissue is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0003581 name: eyelid connective tissue namespace: uberon def: "A portion of connective tissue that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon connective tissue" EXACT [OBOL:automatic] synonym: "blepharon portion of connective tissue" EXACT [OBOL:automatic] synonym: "blepharon textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of blepharon" EXACT [OBOL:automatic] synonym: "connective tissue of eyelid" EXACT [OBOL:automatic] synonym: "eyelid portion of connective tissue" EXACT [OBOL:automatic] synonym: "eyelid textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of blepharon" EXACT [OBOL:automatic] synonym: "portion of connective tissue of eyelid" EXACT [OBOL:automatic] synonym: "textus connectivus of blepharon" EXACT [OBOL:automatic] synonym: "textus connectivus of eyelid" EXACT [OBOL:automatic] xref: MA:0001251 xref: ncithesaurus:Eyelid_Connective_Tissue is_a: UBERON:0003566 ! head connective tissue [Term] id: UBERON:0003582 name: nasopharynx connective tissue namespace: uberon def: "A portion of connective tissue that is part of a nasopharynx [Obol]." [OBOL:automatic] synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx connective tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx textus connectivus" EXACT [OBOL:automatic] synonym: "nasopharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "nasopharynx textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "portion of connective tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "portion of connective tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "rhinopharynx connective tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "textus connectivus of nasopharynx" EXACT [OBOL:automatic] synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic] xref: MA:0001864 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003570 ! respiratory system connective tissue [Term] id: UBERON:0003583 name: larynx connective tissue namespace: uberon def: "A portion of connective tissue that is part of a larynx [Obol]." [OBOL:automatic] synonym: "connective tissue of larynx" EXACT [OBOL:automatic] synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "larynx textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of larynx" EXACT [OBOL:automatic] synonym: "textus connectivus of larynx" EXACT [OBOL:automatic] xref: MA:0001754 xref: ncithesaurus:Laryngeal_Connective_Tissue is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003570 ! respiratory system connective tissue [Term] id: UBERON:0003584 name: mammary gland connective tissue namespace: uberon def: "the fibrous supportive tissue of the mammary gland." [MP:0009507] synonym: "connective tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "connective tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "connective tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "connective tissue of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland connective tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland portion of connective tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland textus connectivus" EXACT [OBOL:automatic] synonym: "lobe of breast connective tissue" EXACT [OBOL:automatic] synonym: "lobe of breast portion of connective tissue" EXACT [OBOL:automatic] synonym: "lobe of breast textus connectivus" EXACT [OBOL:automatic] synonym: "lobe of mammary gland connective tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland portion of connective tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland textus connectivus" EXACT [OBOL:automatic] synonym: "mammary gland portion of connective tissue" EXACT [OBOL:automatic] synonym: "mammary gland textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "portion of connective tissue of mammary gland" EXACT [OBOL:automatic] synonym: "textus connectivus of lactiferous gland" EXACT [OBOL:automatic] synonym: "textus connectivus of lobe of breast" EXACT [OBOL:automatic] synonym: "textus connectivus of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "textus connectivus of mammary gland" EXACT [OBOL:automatic] xref: FMA:74479 xref: MA:0002897 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003585 name: dermis connective tissue namespace: uberon def: "A portion of connective tissue that is part of a dermis [Obol]." [OBOL:automatic] synonym: "connective tissue of dermis" EXACT [OBOL:automatic] synonym: "dermis portion of connective tissue" EXACT [OBOL:automatic] synonym: "dermis textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of dermis" EXACT [OBOL:automatic] synonym: "textus connectivus of dermis" EXACT [OBOL:automatic] xref: MA:0000799 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003586 name: trunk connective tissue namespace: uberon def: "A portion of connective tissue that is part of a trunk [Obol]." [OBOL:automatic] synonym: "connective tissue of torso" EXACT [OBOL:automatic] synonym: "connective tissue of trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of torso" EXACT [OBOL:automatic] synonym: "portion of connective tissue of trunk" EXACT [OBOL:automatic] synonym: "textus connectivus of torso" EXACT [OBOL:automatic] synonym: "textus connectivus of trunk" EXACT [OBOL:automatic] synonym: "torso connective tissue" EXACT [OBOL:automatic] synonym: "torso portion of connective tissue" EXACT [OBOL:automatic] synonym: "torso textus connectivus" EXACT [OBOL:automatic] synonym: "trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "trunk textus connectivus" EXACT [OBOL:automatic] xref: MA:0000513 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0003587 name: limb connective tissue namespace: uberon def: "A portion of connective tissue that is part of a limb [Obol]." [OBOL:automatic] synonym: "connective tissue of limb" EXACT [OBOL:automatic] synonym: "limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "limb textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of limb" EXACT [OBOL:automatic] synonym: "textus connectivus of limb" EXACT [OBOL:automatic] xref: MA:0000689 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003588 name: forelimb connective tissue namespace: uberon def: "A portion of connective tissue that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb connective tissue" EXACT [OBOL:automatic] synonym: "anteriormost limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "anteriormost limb textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of anteriormost limb" EXACT [OBOL:automatic] synonym: "connective tissue of fore limb" EXACT [OBOL:automatic] synonym: "connective tissue of forelimb" EXACT [OBOL:automatic] synonym: "connective tissue of superior member" EXACT [OBOL:automatic] synonym: "connective tissue of upper extremity" EXACT [OBOL:automatic] synonym: "fore limb connective tissue" EXACT [OBOL:automatic] synonym: "fore limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "fore limb textus connectivus" EXACT [OBOL:automatic] synonym: "forelimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "forelimb textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of anteriormost limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of fore limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of forelimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of superior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of upper extremity" EXACT [OBOL:automatic] synonym: "superior member connective tissue" EXACT [OBOL:automatic] synonym: "superior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "superior member textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of anteriormost limb" EXACT [OBOL:automatic] synonym: "textus connectivus of fore limb" EXACT [OBOL:automatic] synonym: "textus connectivus of forelimb" EXACT [OBOL:automatic] synonym: "textus connectivus of superior member" EXACT [OBOL:automatic] synonym: "textus connectivus of upper extremity" EXACT [OBOL:automatic] synonym: "upper extremity connective tissue" EXACT [OBOL:automatic] synonym: "upper extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "upper extremity textus connectivus" EXACT [OBOL:automatic] xref: MA:0000613 is_a: UBERON:0003587 ! limb connective tissue [Term] id: UBERON:0003589 name: hindlimb connective tissue namespace: uberon def: "A portion of connective tissue that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "connective tissue of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb connective tissue" EXACT [OBOL:automatic] synonym: "hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member connective tissue" EXACT [OBOL:automatic] synonym: "inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity" EXACT [OBOL:automatic] xref: MA:0000661 is_a: UBERON:0003587 ! limb connective tissue [Term] id: UBERON:0003590 name: main bronchus connective tissue namespace: uberon def: "A portion of connective tissue that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "connective tissue of main bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "main bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "portion of connective tissue of main bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "primary bronchus connective tissue" EXACT [OBOL:automatic] synonym: "primary bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "primary bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "principal bronchus connective tissue" EXACT [OBOL:automatic] synonym: "principal bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "principal bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchus principalis" EXACT [OBOL:automatic] synonym: "textus connectivus of main bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of primary bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of principal bronchus" EXACT [OBOL:automatic] xref: MA:0001845 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003592 ! bronchus connective tissue [Term] id: UBERON:0003591 name: lobar bronchus connective tissue namespace: uberon def: "A portion of connective tissue that is part of a lobar bronchus [Obol]." [OBOL:automatic] synonym: "connective tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "lobar bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "lobar bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus connective tissue" EXACT [OBOL:automatic] synonym: "secondary bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "secondary bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of lobar bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of secondary bronchus" EXACT [OBOL:automatic] xref: MA:0001841 is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003592 ! bronchus connective tissue [Term] id: UBERON:0003592 name: bronchus connective tissue namespace: uberon def: "A portion of connective tissue that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi connective tissue" EXACT [OBOL:automatic] synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus" EXACT [OBOL:automatic] synonym: "bronchial trunk connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk textus connectivus" EXACT [OBOL:automatic] synonym: "bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchi" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchial trunk" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchus" EXACT [OBOL:automatic] xref: MA:0001831 xref: ncithesaurus:Bronchus_Connective_Tissue is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0003593 ! thoracic cavity connective tissue [Term] id: UBERON:0003593 name: thoracic cavity connective tissue namespace: uberon def: "A portion of connective tissue that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "cavity of chest connective tissue" EXACT [OBOL:automatic] synonym: "cavity of chest portion of connective tissue" EXACT [OBOL:automatic] synonym: "cavity of chest textus connectivus" EXACT [OBOL:automatic] synonym: "cavity of thorax connective tissue" EXACT [OBOL:automatic] synonym: "cavity of thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "cavity of thorax textus connectivus" EXACT [OBOL:automatic] synonym: "chest cavity connective tissue" EXACT [OBOL:automatic] synonym: "chest cavity portion of connective tissue" EXACT [OBOL:automatic] synonym: "chest cavity textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of cavity of chest" EXACT [OBOL:automatic] synonym: "connective tissue of cavity of thorax" EXACT [OBOL:automatic] synonym: "connective tissue of chest cavity" EXACT [OBOL:automatic] synonym: "connective tissue of pectoral cavity" EXACT [OBOL:automatic] synonym: "connective tissue of thoracic cavity" EXACT [OBOL:automatic] synonym: "pectoral cavity connective tissue" EXACT [OBOL:automatic] synonym: "pectoral cavity portion of connective tissue" EXACT [OBOL:automatic] synonym: "pectoral cavity textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of cavity of chest" EXACT [OBOL:automatic] synonym: "portion of connective tissue of cavity of thorax" EXACT [OBOL:automatic] synonym: "portion of connective tissue of chest cavity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of pectoral cavity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of thoracic cavity" EXACT [OBOL:automatic] synonym: "textus connectivus of cavity of chest" EXACT [OBOL:automatic] synonym: "textus connectivus of cavity of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of chest cavity" EXACT [OBOL:automatic] synonym: "textus connectivus of pectoral cavity" EXACT [OBOL:automatic] synonym: "textus connectivus of thoracic cavity" EXACT [OBOL:automatic] synonym: "thoracic cavity portion of connective tissue" EXACT [OBOL:automatic] synonym: "thoracic cavity textus connectivus" EXACT [OBOL:automatic] xref: MA:0000555 is_a: UBERON:0003837 ! thoracic segment connective tissue [Term] id: UBERON:0003594 name: pelvis connective tissue namespace: uberon def: "A portion of connective tissue that is part of a pelvis [Obol]." [OBOL:automatic] synonym: "connective tissue of pelvis" EXACT [OBOL:automatic] synonym: "pelvis portion of connective tissue" EXACT [OBOL:automatic] synonym: "pelvis textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of pelvis" EXACT [OBOL:automatic] synonym: "textus connectivus of pelvis" EXACT [OBOL:automatic] xref: MA:0000533 is_a: UBERON:0003838 ! abdominal segment connective tissue [Term] id: UBERON:0003595 name: foot connective tissue namespace: uberon def: "A portion of connective tissue that is part of a foot [Obol]." [OBOL:automatic] synonym: "autopod of hind limb connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of hindlimb connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of inferior member connective tissue" EXACT [OBOL:automatic] synonym: "autopod of inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "autopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "connective tissue of foot" EXACT [OBOL:automatic] synonym: "connective tissue of hind limb autopod" EXACT [OBOL:automatic] synonym: "connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb autopod" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member autopod" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity autopod" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "foot portion of connective tissue" EXACT [OBOL:automatic] synonym: "foot textus connectivus" EXACT [OBOL:automatic] synonym: "hind limb autopod connective tissue" EXACT [OBOL:automatic] synonym: "hind limb autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb autopod textus connectivus" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb autopod connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb autopod textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member autopod connective tissue" EXACT [OBOL:automatic] synonym: "inferior member autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member autopod textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity autopod connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity autopod textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of foot" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of foot" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free lower limb" EXACT [OBOL:automatic] xref: MA:0000644 is_a: UBERON:0003589 ! hindlimb connective tissue [Term] id: UBERON:0003596 name: ankle connective tissue namespace: uberon def: "A portion of connective tissue that is part of an ankle [Obol]." [OBOL:automatic] synonym: "ankle portion of connective tissue" EXACT [OBOL:automatic] synonym: "ankle textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of ankle" EXACT [OBOL:automatic] synonym: "portion of connective tissue of ankle" EXACT [OBOL:automatic] synonym: "textus connectivus of ankle" EXACT [OBOL:automatic] xref: MA:0000639 is_a: UBERON:0003589 ! hindlimb connective tissue [Term] id: UBERON:0003597 name: hand digit connective tissue namespace: uberon def: "A portion of connective tissue that is part of a finger [Obol]." [OBOL:automatic] synonym: "connective tissue of digit of hand" EXACT [OBOL:automatic] synonym: "connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of digitus manus" EXACT [OBOL:automatic] synonym: "connective tissue of finger" EXACT [OBOL:automatic] synonym: "connective tissue of hand digit" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "digit of hand connective tissue" EXACT [OBOL:automatic] synonym: "digit of hand portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of hand textus connectivus" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "digitus manus connective tissue" EXACT [OBOL:automatic] synonym: "digitus manus portion of connective tissue" EXACT [OBOL:automatic] synonym: "digitus manus textus connectivus" EXACT [OBOL:automatic] synonym: "finger connective tissue" EXACT [OBOL:automatic] synonym: "finger portion of connective tissue" EXACT [OBOL:automatic] synonym: "finger textus connectivus" EXACT [OBOL:automatic] synonym: "hand digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "hand digit textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of hand" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digitus manus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of finger" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hand digit" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of hand" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of digitus manus" EXACT [OBOL:automatic] synonym: "textus connectivus of finger" EXACT [OBOL:automatic] synonym: "textus connectivus of hand digit" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free upper limb digit" EXACT [OBOL:automatic] xref: MA:0000623 is_a: UBERON:0003598 ! hand connective tissue [Term] id: UBERON:0003598 name: hand connective tissue namespace: uberon def: "A portion of connective tissue that is part of a hand [Obol]." [OBOL:automatic] synonym: "arm autopod connective tissue" EXACT [OBOL:automatic] synonym: "arm autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm autopod textus connectivus" EXACT [OBOL:automatic] synonym: "arm distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "arm distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of arm connective tissue" EXACT [OBOL:automatic] synonym: "autopod of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of arm textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of brachial region connective tissue" EXACT [OBOL:automatic] synonym: "autopod of brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region autopod connective tissue" EXACT [OBOL:automatic] synonym: "brachial region autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region autopod textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of arm autopod" EXACT [OBOL:automatic] synonym: "connective tissue of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of arm" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region autopod" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of hand" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "hand portion of connective tissue" EXACT [OBOL:automatic] synonym: "hand textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hand" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod textus connectivus" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of arm autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of hand" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free upper limb" EXACT [OBOL:automatic] xref: MA:0000620 is_a: UBERON:0003588 ! forelimb connective tissue [Term] id: UBERON:0003599 name: tail connective tissue namespace: uberon def: "A portion of connective tissue that is part of a tail [Obol]." [OBOL:automatic] synonym: "connective tissue of post-vent region" EXACT [OBOL:automatic] synonym: "connective tissue of tail" EXACT [OBOL:automatic] synonym: "portion of connective tissue of post-vent region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of tail" EXACT [OBOL:automatic] synonym: "post-vent region connective tissue" EXACT [OBOL:automatic] synonym: "post-vent region portion of connective tissue" EXACT [OBOL:automatic] synonym: "post-vent region textus connectivus" EXACT [OBOL:automatic] synonym: "tail portion of connective tissue" EXACT [OBOL:automatic] synonym: "tail textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of post-vent region" EXACT [OBOL:automatic] synonym: "textus connectivus of tail" EXACT [OBOL:automatic] xref: MA:0000697 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0003601 name: neck cartilage namespace: uberon def: "A cartilage that is part of a neck [Obol]." [OBOL:automatic] synonym: "cartilage of neck" EXACT [OBOL:automatic] synonym: "cartilage of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) cartilage" EXACT [OBOL:automatic] xref: MA:0000586 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003568 ! neck connective tissue [Term] id: UBERON:0003603 name: lower respiratory tract cartilage namespace: uberon def: "A cartilage that is part of a lower respiratory tract [Obol]." [OBOL:automatic] synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic] xref: MA:0001819 xref: ncithesaurus:Lower_Respiratory_Tract_Cartilage is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0003580 ! lower respiratory tract connective tissue [Term] id: UBERON:0003604 name: trachea cartilage namespace: uberon def: "The cartilages of the trachea (or tracheal rings) vary from sixteen to twenty in number: each forms an imperfect ring, which occupies the anterior two-thirds or so of the circumference of the trachea, being deficient behind, where the tube is completed by fibrous tissue and unstriped muscular fibers." [Wikipedia:Tracheal_rings] synonym: "cartilage of the trachea" RELATED [Wikipedia:Tracheal_rings] synonym: "cartilage of trachea" EXACT [OBOL:automatic] synonym: "cartilage of windpipe" EXACT [OBOL:automatic] synonym: "cartilaginous ring of trachea" EXACT [EMAPA:18699] synonym: "cartilaginous trachea cartilage" EXACT [OBOL:automatic] synonym: "cartilago trachealis" EXACT [FMA:7434] synonym: "ring of the trachea" RELATED [Wikipedia:Tracheal_rings] synonym: "tracheal cartilage" EXACT [FMA:7434] synonym: "tracheal ring" RELATED [Wikipedia:Tracheal_rings] synonym: "windpipe cartilage" EXACT [OBOL:automatic] xref: EMAPA:18699 xref: FMA:7434 xref: MA:0001857 xref: SCTID:278979006 xref: ncithesaurus:Trachea_Cartilage is_a: UBERON:0003571 ! trachea connective tissue is_a: UBERON:0003603 ! lower respiratory tract cartilage is_a: UBERON:0003601 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! neck cartilage [Term] id: UBERON:0003605 name: eye skin gland namespace: uberon def: "A skin gland that is part of a camera-type eye [Obol]." [OBOL:automatic] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "camera-type eye skin gland" EXACT [OBOL:automatic] synonym: "camera-type eye skin glands" EXACT [OBOL:automatic] synonym: "camera-type eye skin glands set" EXACT [OBOL:automatic] synonym: "skin gland of camera-type eye" EXACT [OBOL:automatic] synonym: "skin gland of vertebrate eye" EXACT [OBOL:automatic] synonym: "skin glands of camera-type eye" EXACT [OBOL:automatic] synonym: "skin glands of vertebrate eye" EXACT [OBOL:automatic] synonym: "skin glands set of camera-type eye" EXACT [OBOL:automatic] synonym: "skin glands set of vertebrate eye" EXACT [OBOL:automatic] synonym: "vertebrate eye skin gland" EXACT [OBOL:automatic] synonym: "vertebrate eye skin glands" EXACT [OBOL:automatic] synonym: "vertebrate eye skin glands set" EXACT [OBOL:automatic] xref: MA:0002451 is_a: UBERON:0002419 ! skin gland is_a: UBERON:0004859 ! eye gland [Term] id: UBERON:0003606 name: limb long bone namespace: uberon def: "A long bone that is part of a limb [Obol]." [OBOL:automatic] synonym: "long bone of limb" EXACT [OBOL:automatic] xref: MA:0000298 is_a: UBERON:0002428 ! limb bone is_a: UBERON:0002495 ! long bone [Term] id: UBERON:0003607 name: forelimb long bone namespace: uberon def: "A long bone that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb long bone" EXACT [OBOL:automatic] synonym: "fore limb long bone" EXACT [OBOL:automatic] synonym: "long bone of anteriormost limb" EXACT [OBOL:automatic] synonym: "long bone of fore limb" EXACT [OBOL:automatic] synonym: "long bone of forelimb" EXACT [OBOL:automatic] synonym: "long bone of superior member" EXACT [OBOL:automatic] synonym: "long bone of upper extremity" EXACT [OBOL:automatic] synonym: "superior member long bone" EXACT [OBOL:automatic] synonym: "upper extremity long bone" EXACT [OBOL:automatic] xref: MA:0000299 is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0008962 ! forelimb bone [Term] id: UBERON:0003608 name: hindlimb long bone namespace: uberon def: "A long bone that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb long bone" EXACT [OBOL:automatic] synonym: "inferior member long bone" EXACT [OBOL:automatic] synonym: "long bone of hind limb" EXACT [OBOL:automatic] synonym: "long bone of hindlimb" EXACT [OBOL:automatic] synonym: "long bone of inferior member" EXACT [OBOL:automatic] synonym: "long bone of lower extremity" EXACT [OBOL:automatic] synonym: "lower extremity long bone" EXACT [OBOL:automatic] xref: MA:0000300 is_a: UBERON:0003464 ! hindlimb bone is_a: UBERON:0003606 ! limb long bone [Term] id: UBERON:0003609 name: aorta elastic tissue namespace: uberon def: "the dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall." [MP:0009862] synonym: "adult aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic] synonym: "adult aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic tissue" EXACT [OBOL:automatic] synonym: "dorsal aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of adult aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of dorsal aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "elastic tissue of adult aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of dorsal aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of adult aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of dorsal aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "trunk of aortic tree elastic connective tissue" EXACT [OBOL:automatic] synonym: "trunk of aortic tree elastic tissue" EXACT [OBOL:automatic] synonym: "trunk of aortic tree textus connectivus elasticus" EXACT [OBOL:automatic] xref: MA:0002859 is_a: UBERON:0003614 ! blood vessel elastic tissue [Term] id: UBERON:0003610 name: heart elastic tissue namespace: uberon def: "the type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers." [MP:0009863] synonym: "elastic connective tissue of heart" EXACT [OBOL:automatic] synonym: "elastic tissue of heart" EXACT [OBOL:automatic] synonym: "heart elastic connective tissue" EXACT [OBOL:automatic] synonym: "heart textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic] xref: MA:0002858 is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003611 name: respiratory system elastic tissue namespace: uberon def: "An elastic tissue that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius elastic connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius elastic tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "elastic connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "elastic tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "elastic tissue of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system elastic connective tissue" EXACT [OBOL:automatic] synonym: "respiratory system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of respiratory system" EXACT [OBOL:automatic] xref: MA:0001820 is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0004777 ! respiratory system submucosa [Term] id: UBERON:0003613 name: cardiovascular system elastic tissue namespace: uberon def: "An elastic tissue that is part of a circulatory system [Obol]." [OBOL:automatic] synonym: "cardiovascular system elastic connective tissue" EXACT [OBOL:automatic] synonym: "cardiovascular system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "circulatory system elastic connective tissue" EXACT [OBOL:automatic] synonym: "circulatory system elastic tissue" EXACT [OBOL:automatic] synonym: "circulatory system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of cardiovascular system" EXACT [OBOL:automatic] synonym: "elastic connective tissue of circulatory system" EXACT [OBOL:automatic] synonym: "elastic tissue of cardiovascular system" EXACT [OBOL:automatic] synonym: "elastic tissue of circulatory system" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of cardiovascular system" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of circulatory system" EXACT [OBOL:automatic] xref: MA:0002857 is_a: UBERON:0002521 ! elastic tissue relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0003614 name: blood vessel elastic tissue namespace: uberon def: "An elastic tissue that is part of a blood vessel [Obol]." [OBOL:automatic] synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic] synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of blood vessel" EXACT [OBOL:automatic] synonym: "elastic tissue of blood vessel" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of blood vessel" EXACT [OBOL:automatic] xref: MA:0002856 is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0003615 name: lung elastic tissue namespace: uberon def: "An elastic tissue that is part of a lung [Obol]." [OBOL:automatic] synonym: "elastic connective tissue of lung" EXACT [OBOL:automatic] synonym: "elastic tissue of lung" EXACT [OBOL:automatic] synonym: "lung elastic connective tissue" EXACT [OBOL:automatic] synonym: "lung textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of lung" EXACT [OBOL:automatic] xref: MA:0002860 is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue [Term] id: UBERON:0003616 name: bronchus elastic tissue namespace: uberon def: "An elastic tissue that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchi elastic tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "bronchial trunk elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk elastic tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "bronchus elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchus textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchi" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchi" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchial trunk" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchus" EXACT [OBOL:automatic] xref: MA:0001838 xref: ncithesaurus:Bronchus_Elastic_Tissue is_a: UBERON:0003592 ! bronchus connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue relationship: part_of UBERON:0001957 ! submucosa of bronchus [Term] id: UBERON:0003617 name: trachea elastic tissue namespace: uberon def: "An elastic tissue that is part of a trachea [Obol]." [OBOL:automatic] synonym: "cartilaginous trachea elastic connective tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea elastic tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "elastic connective tissue of vertebrate trachea" EXACT [OBOL:automatic] synonym: "elastic connective tissue of windpipe" EXACT [OBOL:automatic] synonym: "elastic tissue of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "elastic tissue of vertebrate trachea" EXACT [OBOL:automatic] synonym: "elastic tissue of windpipe" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of vertebrate trachea" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of windpipe" EXACT [OBOL:automatic] synonym: "vertebrate trachea elastic connective tissue" EXACT [OBOL:automatic] synonym: "vertebrate trachea elastic tissue" EXACT [OBOL:automatic] synonym: "vertebrate trachea textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "windpipe elastic connective tissue" EXACT [OBOL:automatic] synonym: "windpipe elastic tissue" EXACT [OBOL:automatic] synonym: "windpipe textus connectivus elasticus" EXACT [OBOL:automatic] xref: MA:0001861 is_a: UBERON:0003571 ! trachea connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue relationship: part_of UBERON:0002202 ! submucosa of trachea [Term] id: UBERON:0003618 name: aorta tunica media namespace: uberon def: "the middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873] synonym: "adult aorta tunica media" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic] synonym: "trunk of aortic tree tunica media" EXACT [OBOL:automatic] synonym: "tunica media of adult aorta" EXACT [OBOL:automatic] synonym: "tunica media of aorta" EXACT [OBOL:automatic] synonym: "tunica media of dorsal aorta" EXACT [OBOL:automatic] synonym: "tunica media of trunk of aortic tree" EXACT [OBOL:automatic] xref: FMA:74433 xref: MA:0002903 xref: SCTID:48467007 is_a: UBERON:0007239 ! tunica media of artery relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0003619 name: aorta tunica intima namespace: uberon def: "the innermost layer of the aorta, containing the endothelium and an inner elastic membrane." [MP:0009872] synonym: "adult aorta tunica intima" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica intima" EXACT [OBOL:automatic] synonym: "trunk of aortic tree tunica intima" EXACT [OBOL:automatic] synonym: "tunica intima of adult aorta" EXACT [OBOL:automatic] synonym: "tunica intima of aorta" EXACT [OBOL:automatic] synonym: "tunica intima of dorsal aorta" EXACT [OBOL:automatic] synonym: "tunica intima of trunk of aortic tree" EXACT [OBOL:automatic] xref: FMA:74419 xref: MA:0002904 xref: SCTID:362031007 is_a: UBERON:0005740 ! tunica intima of artery relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0003620 name: hand digit 1 phalanx namespace: uberon def: "A phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] digit long bone" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] long bone of digit" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "digit long bone of first digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 1" EXACT [OBOL:automatic] synonym: "digit long bone of thumb" EXACT [OBOL:automatic] synonym: "first digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "first digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "first digit of hand phalanx" EXACT [OBOL:automatic] synonym: "hand digit 1 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 1 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "long bone of digit of first digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 1" EXACT [OBOL:automatic] synonym: "long bone of digit of thumb" EXACT [OBOL:automatic] synonym: "phalanx of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "phalanx of first digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 1" EXACT [OBOL:automatic] synonym: "phalanx of thumb" EXACT [OBOL:automatic] synonym: "thumb digit long bone" EXACT [OBOL:automatic] synonym: "thumb long bone of digit" EXACT [OBOL:automatic] synonym: "thumb phalanx" EXACT [OBOL:automatic] xref: FMA:35477 xref: MA:0001389 xref: SCTID:181975002 xref: ncithesaurus:Hand_Digit_1_Phalanx is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0003622 name: hand digit 2 namespace: uberon def: "2nd digit of the hand in mouse and human and homologs." [Wikipedia:Index_finger] comment: comment: This class represents all instances of the 2nd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "2nd digit of hand" EXACT [] synonym: "2nd finger" EXACT [] synonym: "digit 2 of fore-paw" EXACT [EMAPA:17432] synonym: "finger 2" EXACT [EHDAA2:0000517] synonym: "index finger" NARROW [] synonym: "second digit of hand" EXACT [FMA:24946] synonym: "second finger" EXACT [] xref: EHDAA2:0000517 xref: EMAPA:17432 xref: FMA:24946 xref: MA:0000455 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d5/Index_finger.JPG/200px-Index_finger.JPG xref: ncithesaurus:Hand_Digit_2 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006049 ! digit 2 [Term] id: UBERON:0003623 name: hand digit 3 namespace: uberon def: "3rd digit of the hand in mouse and human and homologs." [Wikipedia:Middle_finger] comment: comment: This class represents all instances of the 3rd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "3rd digit of hand" EXACT [] synonym: "3rd finger" EXACT [] synonym: "digit 3 of fore-paw" EXACT [EMAPA:17435] synonym: "finger 3" EXACT [EHDAA2:0000523] synonym: "middle finger" NARROW [] synonym: "third digit of hand" EXACT [FMA:24947] synonym: "third finger" EXACT [] xref: EHDAA2:0000523 xref: EMAPA:17435 xref: FMA:24947 xref: MA:0000456 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Middle_finger.jpg/200px-Middle_finger.jpg xref: ncithesaurus:Hand_Digit_3 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006050 ! digit 3 [Term] id: UBERON:0003624 name: hand digit 4 namespace: uberon def: "4th digit of the hand in mouse and human and homologs." [Wikipedia:Ring_finger] comment: comment: This class represents all instances of the 4th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "4th digit of hand" EXACT [] synonym: "4th finger" EXACT [] synonym: "digit 4 of fore-paw" EXACT [EMAPA:17438] synonym: "finger 4" EXACT [EHDAA2:0000529] synonym: "fourth digit of hand" EXACT [FMA:24948] synonym: "fourth finger" EXACT [] synonym: "ring finger" NARROW [] xref: EHDAA2:0000529 xref: EMAPA:17438 xref: FMA:24948 xref: MA:0000457 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Ring_finger.JPG/200px-Ring_finger.JPG xref: ncithesaurus:Hand_Digit_4 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006051 ! digit 4 [Term] id: UBERON:0003625 name: hand digit 5 namespace: uberon def: "5th digit of the hand in mouse and human and homologs." [Wikipedia:Little_finger] comment: comment: This class represents all instances of the 5th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "5th digit of hand" EXACT [] synonym: "5th finger" EXACT [] synonym: "digit 5 of fore-paw" EXACT [EMAPA:17441] synonym: "fifth digit of hand" EXACT [FMA:24949] synonym: "fifth finger" EXACT [] synonym: "finger 5" EXACT [EHDAA2:0000535] synonym: "little finger" NARROW [] xref: EHDAA2:0000535 xref: EMAPA:17441 xref: FMA:24949 xref: MA:0000458 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Pink.jpg/200px-Pink.jpg xref: ncithesaurus:Hand_Digit_5 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006052 ! digit 5 [Term] id: UBERON:0003631 name: foot digit 1 namespace: uberon def: "1st digit of the foot in mouse and human and homologs." [Wikipedia:Big_toe] synonym: "big toe" NARROW [] synonym: "digit 1 of hind-paw" EXACT [EMAPA:17460] synonym: "digitus primus (I) pedis" RELATED [BTO:0002349] synonym: "great toe" NARROW [] synonym: "hallex" RELATED [] synonym: "hallux" EXACT [] synonym: "hallux; digitus primus [i]" EXACT [FMA:25047] synonym: "toe 1" EXACT [EHDAA2:0002037] xref: BTO:0002349 xref: EHDAA2:0002037 xref: EMAPA:17460 xref: FMA:25047 xref: GAID:45 xref: MA:0000465 xref: MESH:A.01.378.610.250.300.792.380 xref: ncithesaurus:Foot_Digit_1 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006048 ! digit 1 [Term] id: UBERON:0003632 name: foot digit 2 namespace: uberon def: "2nd digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "2nd toe" EXACT [] synonym: "digit 2 of hind-paw" EXACT [EMAPA:17463] synonym: "digitus secundus (II) pedis" RELATED [BTO:0002350] synonym: "digitus secundus [ii]" EXACT [FMA:25048] synonym: "digitus secundus pedis" EXACT [BTO:0002350] synonym: "second digit of foot" EXACT [FMA:25048] synonym: "second toe" EXACT [FMA:25048] synonym: "toe 2" EXACT [EHDAA2:0002042] xref: BTO:0002350 xref: EHDAA2:0002042 xref: EMAPA:17463 xref: FMA:25048 xref: MA:0000466 xref: SCTID:362817008 xref: ncithesaurus:Foot_Digit_2 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006049 ! digit 2 [Term] id: UBERON:0003633 name: foot digit 3 namespace: uberon def: "3rd digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "3rd toe" EXACT [] synonym: "digit 3 of hind-paw" EXACT [EMAPA:17466] synonym: "digitus tertius (III) pedis" RELATED [BTO:0002351] synonym: "digitus tertius [iii]" EXACT [FMA:25051] synonym: "digitus tertius pedis" EXACT [BTO:0002351] synonym: "third digit of foot" EXACT [FMA:25051] synonym: "third toe" EXACT [FMA:25051] synonym: "toe 3" EXACT [EHDAA2:0002047] xref: BTO:0002351 xref: EHDAA2:0002047 xref: EMAPA:17466 xref: FMA:25051 xref: MA:0000467 xref: SCTID:362821001 xref: ncithesaurus:Foot_Digit_3 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006050 ! digit 3 [Term] id: UBERON:0003634 name: foot digit 4 namespace: uberon def: "4th digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "4th toe" EXACT [] synonym: "digit 4 of hind-paw" EXACT [EMAPA:17469] synonym: "digitus quartis pedis" EXACT [BTO:0002352] synonym: "digitus quartus (IV) pedis" RELATED [BTO:0002352] synonym: "digitus quartus [iv]" EXACT [FMA:25052] synonym: "fourth digit of foot" EXACT [FMA:25052] synonym: "fourth toe" EXACT [FMA:25052] synonym: "toe 4" EXACT [EHDAA2:0002052] xref: BTO:0002352 xref: EHDAA2:0002052 xref: EMAPA:17469 xref: FMA:25052 xref: MA:0000468 xref: SCTID:362826006 xref: ncithesaurus:Foot_Digit_4 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006051 ! digit 4 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003635 name: foot digit 5 namespace: uberon def: "5th digit of the foot in mouse and human and homologs." [UBERON:cjm, Wikipedia:Fifth_toe] synonym: "5th toe" EXACT [] synonym: "digit 5 of hind-paw" EXACT [EMAPA:17472] synonym: "digitus minimus; digitus quintus [v]" EXACT [FMA:25053] synonym: "digitus quintus [v] pedis" EXACT [FMA:25053, FMA:TA] synonym: "fifth digit of foot" EXACT [FMA:25053] synonym: "fifth toe" EXACT [FMA:25053] synonym: "little toe" NARROW [] synonym: "toe 5" EXACT [EHDAA2:0002057] xref: BTO:0002353 xref: EHDAA2:0002057 xref: EMAPA:17472 xref: FMA:25053 xref: MA:0000469 xref: SCTID:362830009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: ncithesaurus:Foot_Digit_5 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006052 ! digit 5 [Term] id: UBERON:0003636 name: hand digit 2 phalanx namespace: uberon def: "A phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic] synonym: "2 nd digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "2 nd digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "2 nd digit of hand phalanx" EXACT [OBOL:automatic] synonym: "2 nd finger digit long bone" EXACT [OBOL:automatic] synonym: "2 nd finger long bone of digit" EXACT [OBOL:automatic] synonym: "2 nd finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 2 nd finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 2" EXACT [OBOL:automatic] synonym: "digit long bone of second finger" EXACT [OBOL:automatic] synonym: "hand digit 2 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 2 long bone of digit" EXACT [OBOL:automatic] synonym: "index finger phalanx" EXACT [FMA:35480] synonym: "long bone of digit of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 2 nd finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 2" EXACT [OBOL:automatic] synonym: "long bone of digit of second finger" EXACT [OBOL:automatic] synonym: "phalanx of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 2 nd finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 2" EXACT [OBOL:automatic] synonym: "phalanx of index finger" EXACT [FMA:35480] synonym: "phalanx of second finger" EXACT [OBOL:automatic] synonym: "second finger digit long bone" EXACT [OBOL:automatic] synonym: "second finger long bone of digit" EXACT [OBOL:automatic] synonym: "second finger phalanx" EXACT [OBOL:automatic] xref: FMA:35480 xref: MA:0001390 xref: SCTID:361783009 xref: ncithesaurus:Hand_Digit_2_Phalanx is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0003637 name: hand digit 3 phalanx namespace: uberon def: "A phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic] synonym: "3 rd digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "3 rd digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "3 rd digit of hand phalanx" EXACT [OBOL:automatic] synonym: "3 rd finger digit long bone" EXACT [OBOL:automatic] synonym: "3 rd finger long bone of digit" EXACT [OBOL:automatic] synonym: "3 rd finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 3 rd finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 3" EXACT [OBOL:automatic] synonym: "digit long bone of third finger" EXACT [OBOL:automatic] synonym: "hand digit 3 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 3 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 3 rd finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 3" EXACT [OBOL:automatic] synonym: "long bone of digit of third finger" EXACT [OBOL:automatic] synonym: "middle finger phalanx" EXACT [FMA:35483] synonym: "phalanx of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 3 rd finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 3" EXACT [OBOL:automatic] synonym: "phalanx of middle finger" EXACT [FMA:35483] synonym: "phalanx of third finger" EXACT [OBOL:automatic] synonym: "third finger digit long bone" EXACT [OBOL:automatic] synonym: "third finger long bone of digit" EXACT [OBOL:automatic] synonym: "third finger phalanx" EXACT [OBOL:automatic] xref: FMA:35483 xref: MA:0001391 xref: SCTID:361785002 xref: ncithesaurus:Hand_Digit_3_Phalanx is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0003638 name: hand digit 4 phalanx namespace: uberon def: "A phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic] synonym: "4 th digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "4 th digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "4 th digit of hand phalanx" EXACT [OBOL:automatic] synonym: "4 th finger digit long bone" EXACT [OBOL:automatic] synonym: "4 th finger long bone of digit" EXACT [OBOL:automatic] synonym: "4 th finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 4 th finger" EXACT [OBOL:automatic] synonym: "digit long bone of fourth finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 4" EXACT [OBOL:automatic] synonym: "fourth finger digit long bone" EXACT [OBOL:automatic] synonym: "fourth finger long bone of digit" EXACT [OBOL:automatic] synonym: "fourth finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit 4 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 4 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 4 th finger" EXACT [OBOL:automatic] synonym: "long bone of digit of fourth finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 4" EXACT [OBOL:automatic] synonym: "phalanx of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 4 th finger" EXACT [OBOL:automatic] synonym: "phalanx of fourth finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 4" EXACT [OBOL:automatic] synonym: "phalanx of ring finger" EXACT [FMA:35486] synonym: "ring finger phalanx" EXACT [FMA:35486] xref: FMA:35486 xref: MA:0001392 xref: SCTID:361787005 xref: ncithesaurus:Hand_Digit_4_Phalanx is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0003639 name: hand digit 5 phalanx namespace: uberon def: "A phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic] synonym: "5 th digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "5 th digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "5 th digit of hand phalanx" EXACT [OBOL:automatic] synonym: "5 th finger digit long bone" EXACT [OBOL:automatic] synonym: "5 th finger long bone of digit" EXACT [OBOL:automatic] synonym: "5 th finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 5 th finger" EXACT [OBOL:automatic] synonym: "digit long bone of fifth finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 5" EXACT [OBOL:automatic] synonym: "fifth finger digit long bone" EXACT [OBOL:automatic] synonym: "fifth finger long bone of digit" EXACT [OBOL:automatic] synonym: "fifth finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit 5 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 5 long bone of digit" EXACT [OBOL:automatic] synonym: "little finger phalanx" EXACT [FMA:35489] synonym: "long bone of digit of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 5 th finger" EXACT [OBOL:automatic] synonym: "long bone of digit of fifth finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 5" EXACT [OBOL:automatic] synonym: "phalanx of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 5 th finger" EXACT [OBOL:automatic] synonym: "phalanx of fifth digit of hand" EXACT [FMA:35489] synonym: "phalanx of fifth finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 5" EXACT [OBOL:automatic] synonym: "phalanx of little finger" EXACT [FMA:35489] xref: FMA:35489 xref: MA:0001393 xref: SCTID:361789008 xref: ncithesaurus:Hand_Digit_5_Phalanx is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0003640 name: foot digit 1 phalanx namespace: uberon def: "A phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic] synonym: "big toe phalanx" EXACT [FMA:32884] synonym: "digit long bone of foot digit 1" EXACT [OBOL:automatic] synonym: "digit long bone of hallux" EXACT [OBOL:automatic] synonym: "foot digit 1 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 1 long bone of digit" EXACT [OBOL:automatic] synonym: "hallux digit long bone" EXACT [OBOL:automatic] synonym: "hallux long bone of digit" EXACT [OBOL:automatic] synonym: "hallux phalanx" EXACT [OBOL:automatic] synonym: "long bone of digit of foot digit 1" EXACT [OBOL:automatic] synonym: "long bone of digit of hallux" EXACT [OBOL:automatic] synonym: "phalanx of big toe" EXACT [FMA:32884] synonym: "phalanx of first digit of foot" EXACT [FMA:32884] synonym: "phalanx of foot digit 1" EXACT [OBOL:automatic] synonym: "phalanx of great toe" EXACT [FMA:32884] synonym: "phalanx of hallux" EXACT [OBOL:automatic] xref: FMA:32884 xref: MA:0001381 xref: SCTID:361798006 xref: ncithesaurus:Foot_Digit_1_Phalanx is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003641 name: foot digit 2 phalanx namespace: uberon def: "A phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 2" EXACT [OBOL:automatic] synonym: "foot digit 2 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 2 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of foot digit 2" EXACT [OBOL:automatic] synonym: "phalanx of foot digit 2" EXACT [OBOL:automatic] synonym: "phalanx of second toe" EXACT [FMA:32899] synonym: "second toe phalanx" EXACT [FMA:32899] xref: FMA:32899 xref: MA:0001382 xref: SCTID:361800004 xref: ncithesaurus:Foot_Digit_2_Phalanx is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003642 name: foot digit 3 phalanx namespace: uberon def: "A phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 3" EXACT [OBOL:automatic] synonym: "foot digit 3 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 3 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of foot digit 3" EXACT [OBOL:automatic] synonym: "phalanx of foot digit 3" EXACT [OBOL:automatic] synonym: "phalanx of third toe" EXACT [FMA:32900] synonym: "third toe phalanx" EXACT [FMA:32900] xref: FMA:32900 xref: MA:0001383 xref: SCTID:361802007 xref: ncithesaurus:Foot_Digit_3_Phalanx is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003643 name: respiratory system arterial blood vessel namespace: uberon def: "An arterial blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic] xref: MA:0001800 is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003509 ! arterial blood vessel [Term] id: UBERON:0003644 name: kidney arterial blood vessel namespace: uberon def: "An arterial blood vessel that is part of a kidney [Obol]." [OBOL:automatic] xref: MA:0002578 is_a: UBERON:0003509 ! arterial blood vessel is_a: UBERON:0003517 ! kidney blood vessel [Term] id: UBERON:0003645 name: metacarpal bone of digit 1 namespace: uberon def: "A metacarpal bone that is part of a hand digit 1 [Obol]." [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] metacarpal" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] metacarpal bone" EXACT [OBOL:automatic] synonym: "first digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "first digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "first metacarpal bone" EXACT [FMA:23899] synonym: "hand digit 1 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 1 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 1" EXACT [MA:0001364] synonym: "metacarpal bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "metacarpal bone of first digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 1" EXACT [OBOL:automatic] synonym: "metacarpal bone of thumb" EXACT [OBOL:automatic] synonym: "metacarpal i" EXACT [FMA:23899] synonym: "metacarpal of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "metacarpal of first digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 1" EXACT [OBOL:automatic] synonym: "metacarpal of thumb" EXACT [OBOL:automatic] synonym: "thumb metacarpal" EXACT [OBOL:automatic] synonym: "thumb metacarpal bone" EXACT [OBOL:automatic] xref: FMA:23899 xref: MA:0001364 xref: ncithesaurus:Metacarpal_Bone_Digit_1 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0003620 ! hand digit 1 phalanx [Term] id: UBERON:0003646 name: metacarpal bone of digit 2 namespace: uberon def: "A metacarpal bone that is part of a hand digit 2 [Obol]." [OBOL:automatic] synonym: "2 nd digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "2 nd digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "2 nd finger metacarpal" EXACT [OBOL:automatic] synonym: "2 nd finger metacarpal bone" EXACT [OBOL:automatic] synonym: "hand digit 2 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 2 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 2" EXACT [MA:0001365] synonym: "metacarpal bone of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 2 nd finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 2" EXACT [OBOL:automatic] synonym: "metacarpal bone of second finger" EXACT [OBOL:automatic] synonym: "metacarpal ii" EXACT [FMA:23900] synonym: "metacarpal of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 2 nd finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 2" EXACT [OBOL:automatic] synonym: "metacarpal of second finger" EXACT [OBOL:automatic] synonym: "second finger metacarpal" EXACT [OBOL:automatic] synonym: "second finger metacarpal bone" EXACT [OBOL:automatic] synonym: "second metacarpal bone" EXACT [FMA:23900] xref: FMA:23900 xref: MA:0001365 xref: ncithesaurus:Metacarpal_Bone_Digit_2 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0003636 ! hand digit 2 phalanx [Term] id: UBERON:0003647 name: metacarpal bone of digit 3 namespace: uberon def: "A metacarpal bone that is part of a hand digit 3 [Obol]." [OBOL:automatic] synonym: "3 rd digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "3 rd digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "3 rd finger metacarpal" EXACT [OBOL:automatic] synonym: "3 rd finger metacarpal bone" EXACT [OBOL:automatic] synonym: "hand digit 3 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 3 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 3" EXACT [MA:0001366] synonym: "metacarpal bone of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 3 rd finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 3" EXACT [OBOL:automatic] synonym: "metacarpal bone of third finger" EXACT [OBOL:automatic] synonym: "metacarpal iii" EXACT [FMA:23901] synonym: "metacarpal of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 3 rd finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 3" EXACT [OBOL:automatic] synonym: "metacarpal of third finger" EXACT [OBOL:automatic] synonym: "third finger metacarpal" EXACT [OBOL:automatic] synonym: "third finger metacarpal bone" EXACT [OBOL:automatic] synonym: "third metacarpal bone" EXACT [FMA:23901] xref: FMA:23901 xref: MA:0001366 xref: ncithesaurus:Metacarpal_Bone_Digit_3 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0003637 ! hand digit 3 phalanx [Term] id: UBERON:0003648 name: metacarpal bone of digit 4 namespace: uberon def: "A metacarpal bone that is part of a hand digit 4 [Obol]." [OBOL:automatic] synonym: "4 th digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "4 th digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "4 th finger metacarpal" EXACT [OBOL:automatic] synonym: "4 th finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fourth finger metacarpal" EXACT [OBOL:automatic] synonym: "fourth finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fourth metacarpal bone" EXACT [FMA:23902] synonym: "hand digit 4 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 4 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 4" EXACT [MA:0001367] synonym: "metacarpal bone of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 4 th finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of fourth finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 4" EXACT [OBOL:automatic] synonym: "metacarpal iv" EXACT [FMA:23902] synonym: "metacarpal of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 4 th finger" EXACT [OBOL:automatic] synonym: "metacarpal of fourth finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 4" EXACT [OBOL:automatic] xref: FMA:23902 xref: MA:0001367 xref: ncithesaurus:Metacarpal_Bone_Digit_4 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0003638 ! hand digit 4 phalanx [Term] id: UBERON:0003649 name: metacarpal bone of digit 5 namespace: uberon def: "A metacarpal bone that is part of a hand digit 5 [Obol]." [OBOL:automatic] comment: note FMA also has FMA:36782 synonym: "5 th digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "5 th digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "5 th finger metacarpal" EXACT [OBOL:automatic] synonym: "5 th finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fifth finger metacarpal" EXACT [OBOL:automatic] synonym: "fifth finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fifth metacarpal bone" EXACT [FMA:23903] synonym: "hand digit 5 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 5 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 5" EXACT [MA:0001368] synonym: "metacarpal bone of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 5 th finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of fifth finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 5" EXACT [OBOL:automatic] synonym: "metacarpal of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 5 th finger" EXACT [OBOL:automatic] synonym: "metacarpal of fifth finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 5" EXACT [OBOL:automatic] xref: FMA:23903 xref: MA:0001368 xref: ncithesaurus:Metacarpal_Bone_Digit_5 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0003639 ! hand digit 5 phalanx [Term] id: UBERON:0003650 name: metatarsal bone of digit 1 namespace: uberon def: "A metatarsal bone that is part of a foot digit 1 [Obol]." [OBOL:automatic] synonym: "first metatarsal bone" EXACT [FMA:24502] synonym: "foot digit 1 metatarsal bone" EXACT [OBOL:automatic] synonym: "hallux metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal I" EXACT [AAO:0000925] synonym: "metatarsal bone digit 1" EXACT [MA:0001369] synonym: "metatarsal bone of foot digit 1" EXACT [OBOL:automatic] synonym: "metatarsal bone of hallux" EXACT [OBOL:automatic] xref: AAO:0000925 xref: FMA:24502 xref: MA:0001369 xref: SCTID:182121005 xref: ncithesaurus:Metatarsal_Bone_Digit_1 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0003640 ! foot digit 1 phalanx [Term] id: UBERON:0003651 name: metatarsal bone of digit 2 namespace: uberon def: "A metatarsal bone that is part of a foot digit 2 [Obol]." [OBOL:automatic] synonym: "foot digit 2 metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal II" EXACT [AAO:0000926] synonym: "metatarsal bone digit 2" EXACT [MA:0001370] synonym: "metatarsal bone of foot digit 2" EXACT [OBOL:automatic] synonym: "second metatarsal bone" EXACT [FMA:24503] xref: AAO:0000926 xref: FMA:24503 xref: MA:0001370 xref: SCTID:182128004 xref: ncithesaurus:Metatarsal_Bone_Digit_2 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0003641 ! foot digit 2 phalanx [Term] id: UBERON:0003652 name: metatarsal bone of digit 3 namespace: uberon def: "A metatarsal bone that is part of a foot digit 3 [Obol]." [OBOL:automatic] synonym: "foot digit 3 metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal III" EXACT [AAO:0000927] synonym: "metatarsal bone digit 3" EXACT [MA:0001371] synonym: "metatarsal bone of foot digit 3" EXACT [OBOL:automatic] synonym: "third metatarsal bone" EXACT [FMA:24504] xref: AAO:0000927 xref: FMA:24504 xref: MA:0001371 xref: SCTID:182134006 xref: ncithesaurus:Metatarsal_Bone_Digit_3 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0003642 ! foot digit 3 phalanx [Term] id: UBERON:0003653 name: metatarsal bone of digit 4 namespace: uberon def: "A metatarsal bone that is part of a foot digit 4 [Obol]." [OBOL:automatic] synonym: "foot digit 4 metatarsal bone" EXACT [OBOL:automatic] synonym: "fourth metatarsal bone" EXACT [FMA:24505] synonym: "metatarsal IV" EXACT [AAO:0000928] synonym: "metatarsal bone digit 4" EXACT [MA:0001372] synonym: "metatarsal bone of foot digit 4" EXACT [OBOL:automatic] xref: AAO:0000928 xref: FMA:24505 xref: MA:0001372 xref: SCTID:182139001 xref: ncithesaurus:Metatarsal_Bone_Digit_4 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0003862 ! foot digit 4 phalanx [Term] id: UBERON:0003654 name: metatarsal bone of digit 5 namespace: uberon def: "A metatarsal bone that is part of a foot digit 5 [Obol]." [OBOL:automatic] synonym: "fifth metatarsal bone" EXACT [FMA:24506] synonym: "foot digit 5 metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal V" EXACT [AAO:0000929] synonym: "metatarsal bone digit 5" EXACT [MA:0001373] synonym: "metatarsal bone of foot digit 5" EXACT [OBOL:automatic] xref: AAO:0000929 xref: FMA:24506 xref: MA:0001373 xref: SCTID:182144008 xref: ncithesaurus:Metatarsal_Bone_Digit_5 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0003863 ! foot digit 5 phalanx [Term] id: UBERON:0003655 name: molar tooth namespace: uberon def: "Molars are the rearmost and most complicated kind of tooth in most mammals." [Wikipedia:Molar_(tooth)] comment: Adult humans have twelve molars, in four groups of three at the back of the mouth. The third, rearmost molar in each group is called a wisdom tooth. It is the last tooth to appear, breaking through the surface of the gum at about the age of twenty, although this varies from individual to individual. Ethnicity can also have an impact on the age at which this occurs, with statistical variations between groups. The human mouth contains upper (maxillary) and lower (mandibular) molars. They are: maxillary first molar, maxillary second molar, maxillary third molar, mandibular first molar, mandibular second molar, and mandibular third molar. synonym: "dens molaris" EXACT [Wikipedia:Molar_%28tooth%29] synonym: "molar" EXACT [MA:0000350] synonym: "molaris" EXACT [BTO:0001759] xref: BTO:0001759 xref: FMA:55638 xref: MA:0000350 xref: MESH:A.14.254.860.525 xref: SCTID:362115002 xref: ncithesaurus:Molar_Tooth is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003656 name: mesopodium bone namespace: uberon def: "The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost[WP]." [Wikipedia:Carpus_and_tarsus_of_land_vertebrates] synonym: "basipodium bone" EXACT [MA:th] synonym: "carpal/tarsal bone" EXACT [MA:0000295] xref: MA:0000295 is_a: UBERON:0002428 ! limb bone [Term] id: UBERON:0003657 name: limb joint namespace: uberon def: "A skeletal joint that is part of a limb [Obol]." [OBOL:automatic] comment: we use the FMA set-of term in absence of a singular term synonym: "joint of limb" EXACT [] synonym: "joint of skeletal limb" EXACT [Obol:automatic] synonym: "skeletal limb joint" EXACT [GO:0036023] xref: EMAPA:19204 xref: FMA:71276 xref: MA:0000691 xref: galen:LimbJoint is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0003658 name: hip muscle namespace: uberon def: "A muscle organ that is part of a hip [Obol]." [OBOL:automatic] synonym: "hip muscle organ" EXACT [OBOL:automatic] synonym: "hip region muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of hip" EXACT [OBOL:automatic] synonym: "muscle organ of hip region" EXACT [OBOL:automatic] synonym: "muscle organ of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae muscle organ" EXACT [OBOL:automatic] xref: MA:0000657 is_a: UBERON:0001497 ! muscle of pelvic girdle [Term] id: UBERON:0003659 name: foot digit muscle namespace: uberon def: "A muscle organ that is part of a toe [Obol]." [OBOL:automatic] synonym: "digit of foot muscle organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic] synonym: "digitus pedis muscle organ" EXACT [OBOL:automatic] synonym: "foot digit muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of digit of foot" EXACT [OBOL:automatic] synonym: "muscle organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "muscle organ of digitus pedis" EXACT [OBOL:automatic] synonym: "muscle organ of foot digit" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "muscle organ of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit muscle organ" EXACT [OBOL:automatic] synonym: "toe muscle organ" EXACT [OBOL:automatic] xref: MA:0000648 is_a: UBERON:0001498 ! muscle of foot [Term] id: UBERON:0003660 name: eyelid muscle namespace: uberon def: "A muscle organ that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon muscle organ" EXACT [OBOL:automatic] synonym: "eyelid muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of blepharon" EXACT [OBOL:automatic] synonym: "muscle organ of eyelid" EXACT [OBOL:automatic] xref: MA:0000269 xref: ncithesaurus:Eyelid_Muscle is_a: UBERON:0001577 ! muscle of face is_a: UBERON:0004253 ! skin muscle relationship: part_of UBERON:0004277 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! eye muscle [Term] id: UBERON:0003661 name: limb muscle namespace: uberon def: "A muscle organ that is part of a limb [Obol]." [OBOL:automatic] synonym: "limb muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of limb" EXACT [OBOL:automatic] xref: MA:0000692 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0003662 name: forelimb muscle namespace: uberon alt_id: UBERON:0005634 def: "A muscle that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "arm muscle system" EXACT [EHDAA2:0000141] synonym: "fore limb muscle organ" EXACT [OBOL:automatic] synonym: "forelimb muscle organ" EXACT [OBOL:automatic] synonym: "muscle of upper limb" EXACT [FMA:9621] synonym: "musculature of arm" RELATED PLURAL [] synonym: "musculature of the arm" RELATED PLURAL [] synonym: "upper limb muscle" EXACT [FMA:9621] synonym: "wing muscle" NARROW SENSU [Geisha:syn] xref: AAO:0000204 xref: BTO:0000479 xref: FMA:9621 xref: MA:0000615 is_a: UBERON:0003661 ! limb muscle [Term] id: UBERON:0003663 name: hindlimb muscle namespace: uberon def: "A muscle organ that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb muscle organ" EXACT [OBOL:automatic] synonym: "hindlimb muscle organ" EXACT [OBOL:automatic] synonym: "inferior member muscle organ" EXACT [OBOL:automatic] synonym: "lower extremity muscle organ" EXACT [OBOL:automatic] synonym: "lower limb muscle" EXACT [FMA:9622] synonym: "muscle of lower limb" EXACT [FMA:9622] synonym: "muscle organ of hind limb" EXACT [OBOL:automatic] synonym: "muscle organ of hindlimb" EXACT [OBOL:automatic] synonym: "muscle organ of inferior member" EXACT [OBOL:automatic] synonym: "muscle organ of lower extremity" EXACT [OBOL:automatic] xref: AAO:0000222 xref: EFO:0001928 xref: FMA:9622 xref: MA:0000663 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003661 ! limb muscle [Term] id: UBERON:0003664 name: hand digit muscle namespace: uberon def: "A muscle organ that is part of a finger [Obol]." [OBOL:automatic] synonym: "digit of hand muscle organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic] synonym: "digitus manus muscle organ" EXACT [OBOL:automatic] synonym: "finger muscle organ" EXACT [OBOL:automatic] synonym: "hand digit muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of digit of hand" EXACT [OBOL:automatic] synonym: "muscle organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "muscle organ of digitus manus" EXACT [OBOL:automatic] synonym: "muscle organ of finger" EXACT [OBOL:automatic] synonym: "muscle organ of hand digit" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit muscle organ" EXACT [OBOL:automatic] xref: MA:0000624 is_a: UBERON:0001500 ! muscle of hand [Term] id: UBERON:0003665 name: tail muscle namespace: uberon def: "A muscle organ that is part of a tail [Obol]." [OBOL:automatic] synonym: "muscle organ of post-vent region" EXACT [OBOL:automatic] synonym: "muscle organ of tail" EXACT [OBOL:automatic] synonym: "post-vent region muscle organ" EXACT [OBOL:automatic] synonym: "tail muscle organ" EXACT [OBOL:automatic] xref: BTO:0001905 xref: MA:0000699 xref: SCTID:113230005 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0003666 name: upper jaw molar namespace: uberon def: "A molar tooth that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "molar tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic] synonym: "palatoquadrate arch molar tooth" EXACT [OBOL:automatic] synonym: "upper jaw molar tooth" EXACT [OBOL:automatic] synonym: "upper primary molar tooth" EXACT [FMA:84210] xref: EHDAA2:0002125 xref: EHDAA:8053 xref: EMAPA:17942 xref: FMA:55720 xref: MA:0001603 xref: SCTID:422318005 xref: ncithesaurus:Upper_Jaw_Molar is_a: UBERON:0003267 ! tooth of upper jaw is_a: UBERON:0003655 ! molar tooth [Term] id: UBERON:0003667 name: lower jaw molar namespace: uberon def: "A molar tooth that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "lower jaw molar tooth" EXACT [OBOL:automatic] synonym: "lower primary molar tooth" NARROW [FMA:84213] synonym: "molar tooth of lower jaw" EXACT [OBOL:automatic] synonym: "molar tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch molar tooth" EXACT [OBOL:automatic] xref: EHDAA2:0001025 xref: EHDAA:8017 xref: EMAPA:17921 xref: FMA:55721 xref: MA:0001602 xref: ncithesaurus:Lower_Jaw_Molar is_a: UBERON:0003268 ! tooth of lower jaw is_a: UBERON:0003655 ! molar tooth [Term] id: UBERON:0003668 name: synovial bursa namespace: uberon def: "a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [Wikipedia:Synovial_bursa] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "bursa" EXACT [FMA:9692] xref: FMA:9692 xref: GAID:252 xref: MESH:A.02.835.583.156 xref: SCTID:182483003 xref: galen:Bursa xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png xref: ncithesaurus:Synovial_Bursa is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003669 name: fascia lata namespace: uberon def: "The fascia lata is the deep fascia of the thigh. [WP,unvetted]." [Wikipedia:Fascia_lata] xref: FMA:13902 xref: GAID:117 xref: MESH:A.02.340.424 xref: SCTID:361911008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray431.png/200px-Gray431.png xref: ncithesaurus:Fascia_Lata is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003670 name: smegma namespace: uberon def: "a combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]." [Wikipedia:Smegma] xref: FMA:19656 xref: GAID:1170 xref: MESH:A.12.200.769 xref: ncithesaurus:Smegma is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0003671 name: anterior cruciate ligament namespace: uberon xref: FMA:44614 xref: GAID:122 xref: MESH:A.02.513.514.100 xref: OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA xref: galen:AnteriorCruciateLigament xref: ncithesaurus:Anterior_Cruciate_Ligament is_a: UBERON:0003577 ! knee connective tissue is_a: UBERON:0006659 ! cruciate ligament is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003672 name: dentition namespace: uberon comment: In FMA this is an anatomical set synonym: "dentes" EXACT [FMA:75150, FMA:TA] synonym: "set of teeth" EXACT [FMA:75150] synonym: "teeth" EXACT [FMA:75150] synonym: "teeth set" EXACT [FMA:75150] xref: AAO:0000126 xref: FMA:75150 xref: GAID:1249 xref: MESH:A.14.254 xref: OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA xref: SCTID:245543004 xref: ncithesaurus:Dentition is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0003673 name: ligamentum flavum namespace: uberon synonym: "flaval ligament" RELATED [GAID:126] xref: FMA:13423 xref: GAID:126 xref: MESH:A.02.513.514.287 xref: SCTID:244598002 xref: ncithesaurus:Ligamentum_Flavum is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0003674 name: cuspid namespace: uberon def: "In mammalian oral anatomy, the canine teeth, also called cuspids, dogteeth, fangs, or (in the case of those of the upper jaw) eye teeth, are relatively long, pointed teeth. However, they can appear more flattened, causing them to resemble incisors and leading them to be called incisiform. They evolved and are used primarily for firmly holding food in order to tear it apart, and occasionally as weapons. They are often the largest teeth in a mammal's mouth. Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines." [Wikipedia:Canine_tooth] synonym: "canine %28tooth%29" RELATED [Wikipedia:Canine_tooth] synonym: "canine eminence" RELATED [Wikipedia:Canine_tooth] synonym: "canine teeth" RELATED PLURAL [GAID:1262, Wikipedia:Canine_tooth] synonym: "canine tooth" RELATED [GAID:1262] synonym: "cuspid" EXACT [FMA:55636] synonym: "cuspis dentis" EXACT [FMA:55636, FMA:TA] synonym: "dens caninus" RELATED [Wikipedia:Canine_tooth] synonym: "dogtooth %28anatomy%29" RELATED [Wikipedia:Canine_tooth] synonym: "eye teeth" RELATED PLURAL [Wikipedia:Canine_tooth] synonym: "eye tooth" RELATED [Wikipedia:Canine_tooth] synonym: "eyeteeth" RELATED PLURAL [Wikipedia:Canine_tooth] synonym: "eyetooth" RELATED [Wikipedia:Canine_tooth] synonym: "fang" RELATED [Wikipedia:Canine_tooth] xref: FMA:55636 xref: GAID:1262 xref: MESH:A.14.254.860.200 xref: SCTID:88719004 xref: ncithesaurus:Canine_Tooth is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003675 name: tooth crown namespace: uberon synonym: "anatomical crown" EXACT [FMA:55623] synonym: "corona dentis" EXACT [ncithesaurus:Corona_Dentis] synonym: "crown" RELATED [] synonym: "crown of tooth" EXACT [FMA:55623] synonym: "tooth crown" EXACT [FMA:55623] xref: FMA:55623 xref: GAID:1275 xref: MESH:A.14.254.900.710 xref: SCTID:362106009 xref: ncithesaurus:Corona_Dentis is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003676 name: patellar ligament namespace: uberon synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581] synonym: "ligamentum patella" EXACT [FMA:44581] xref: EMAPA:18509 xref: EMAPA:19139 xref: FMA:44581 xref: GAID:128 xref: MESH:A.02.513.514.475 xref: SCTID:244639004 xref: galen:LigamentumPatellae xref: ncithesaurus:Patellar_Ligament is_a: UBERON:0000211 ! ligament is_a: UBERON:0003577 ! knee connective tissue is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003677 name: tooth root namespace: uberon synonym: "radix corona" EXACT [FMA:55624] synonym: "root of tooth" EXACT [FMA:55624] synonym: "tooth root" EXACT [FMA:55624] xref: FMA:55624 xref: GAID:1280 xref: MESH:A.14.254.900.750 xref: SCTID:245728004 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003678 name: tooth apex namespace: uberon synonym: "apex of tooth" EXACT [FMA:63000] synonym: "apical foramen" RELATED [GAID:1281] synonym: "tooth apex" EXACT [FMA:63000] synonym: "tooth apice" RELATED [GAID:1281] xref: FMA:63000 xref: GAID:1281 xref: MESH:A.14.254.900.750.700 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003679 name: mouth floor namespace: uberon synonym: "floor of mouth" EXACT [FMA:86592] synonym: "sublingual region" RELATED [GAID:1283] xref: EFO:0001923 xref: FMA:86592 xref: GAID:1283 xref: MESH:A.14.549.441 xref: SCTID:245786002 xref: ncithesaurus:Floor_of_the_Mouth is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003680 name: posterior cruciate ligament namespace: uberon xref: FMA:44617 xref: GAID:129 xref: MESH:A.02.513.514.600 xref: galen:PosteriorCruciateLigament xref: ncithesaurus:Posterior_Cruciate_Ligament is_a: UBERON:0003577 ! knee connective tissue is_a: UBERON:0006659 ! cruciate ligament is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003681 name: masticatory muscle namespace: uberon def: "Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed)" [MESH:A.02.633.567.600] comment: Development notes: Masticatory muscles (MM) originate from the somitomeres. These muscles develop late and are not complete even at birth. Tongue muscles develop before masticatory muscles and complete by birth [http://php.med.unsw.edu.au/embryology] synonym: "jaw muscle" EXACT [XAO:0003269] synonym: "muscle of mastication" EXACT [] xref: AAO:0000247 xref: FMA:74060 xref: GAID:145 xref: MESH:A.02.633.567.600 xref: SCTID:244769003 xref: XAO:0003269 xref: ncithesaurus:Muscle_of_the_Mastication is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0003682 name: palatal muscle namespace: uberon def: "The muscles of the palate are the glossopalatine, palatoglossus, levator palati(ni), musculus uvulae, palatopharyngeus, and tensor palati(ni)." [MESH:A.02.633.567.750, Wikipedia:Muscles_of_soft_palate_and_fauces] comment: Editor notes: consider extra class for fauces. AO notes: see also FMA:71438 synonym: "muscle of palate" EXACT [FMA:46726] synonym: "musculi palati mollis et faucium" EXACT [] synonym: "palatal muscle" EXACT [FMA:46726] synonym: "palate muscle" EXACT [FMA:46726] synonym: "palatine muscle" EXACT [FMA:46726] xref: FMA:46726 xref: GAID:151 xref: MESH:A.02.633.567.750 xref: SCTID:244794002 xref: SCTID:73711005 xref: ncithesaurus:Palatal_Muscle is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0003683 name: rotator cuff namespace: uberon synonym: "musculotendinous cuff" EXACT [FMA:37018] synonym: "rotator cuff" EXACT [FMA:37018] synonym: "tendinous cuff" EXACT [FMA:37018] xref: FMA:37018 xref: GAID:160 xref: MESH:A.02.633.567.912 xref: ncithesaurus:Rotator_Cuff is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003684 name: abdominal cavity namespace: uberon def: "body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity] synonym: "cavitas abdominis" RELATED [GAID:17] synonym: "cavity of abdominal compartment" EXACT [FMA:12266] synonym: "cavity of compartment of abdomen" EXACT [FMA:12266] synonym: "space of abdominal compartment" EXACT [FMA:12266] xref: EFO:0000213 xref: FMA:12266 xref: GAID:17 xref: MESH:A.01.047.025 xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA xref: SCTID:361294009 xref: galen:AbdominalCavity xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png xref: ncithesaurus:Abdominal_Cavity is_a: UBERON:0002323 ! body cavity relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003685 name: cranial suture namespace: uberon def: "Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [FMA:71385, ISBN:3110148986, Wikipedia:Suture] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cranium suture" EXACT [OBOL:automatic] synonym: "suture" EXACT [FMA:71385] synonym: "suture joint of skull" EXACT [SCTID:244509003] synonym: "suture of cranium" EXACT [OBOL:automatic] xref: FMA:7493 xref: GAID:211 xref: MA:0001475 xref: MESH:A.02.835.232.781.200 xref: SCTID:244509003 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0009198 ! craniofacial suture relationship: part_of UBERON:0001703 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! neurocranium [Term] id: UBERON:0003686 name: tooth socket namespace: uberon def: "Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]." [Wikipedia:Dental_alveolus] synonym: "alveolus dentali" RELATED [GAID:217] synonym: "alveolus dentalis" RELATED [GAID:217] synonym: "dental alveolus" EXACT [FMA:57490, GAID:217] xref: FMA:57490 xref: GAID:217 xref: MESH:A.02.835.232.781.324.502.125.800 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Alveole_zahn.jpg/200px-Alveole_zahn.jpg is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0004103 ! alveolar ridge [Term] id: UBERON:0003687 name: foramen magnum namespace: uberon def: "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]." [Wikipedia:Foramen_magnum] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0010826 xref: FMA:75306 xref: GAID:228 xref: MESH:A.02.835.232.781.572.434 xref: OpenCyc:Mx4rwOm-FpwpEbGdrcN5Y29ycA xref: SCTID:244679008 xref: ZFA:0005387 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray130.png/200px-Gray130.png xref: ncithesaurus:Foramen_Magnum is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0003688 name: omentum namespace: uberon xref: EV:0100084 xref: FMA:14650 xref: GAID:23 xref: MESH:A.01.047.025.600.573 xref: SCTID:362710002 xref: galen:Omentum xref: ncithesaurus:Omentum is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001178 ! visceral peritoneum [Term] id: UBERON:0003689 name: sella turcica namespace: uberon def: "The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]." [Wikipedia:Sella_turcica] xref: FMA:54709 xref: GAID:231 xref: MESH:A.02.835.232.781.802.662 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray145.png/200px-Gray145.png xref: ncithesaurus:Sella_Turcica is_a: UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0003690 name: sacrum namespace: uberon def: "The sacrum is a large, triangular bone at the base of the spine and at the upper and back part of the pelvic cavity, where it is inserted like a wedge between the two hip bones. Its upper part connects with the last lumbar vertebra, and bottom part with the coccyx (tailbone). In children, it consists of usually five unfused vertebrae which begin to fuse between ages 16-18 and are usually completely fused into a single bone by age 26. It is curved upon itself and placed obliquely (that is, tilted forward). It is kyphotic b that is, concave facing forwards. The base projects forward as the sacral promontory internally, and articulates with the last lumbar vertebra to form the prominent sacrovertebral angle. The central part is curved outward towards the posterior, allowing greater room for the pelvic cavity. [WP,unvetted]." [Wikipedia:Sacrum] synonym: "os sacrum" RELATED [Wikipedia:Sacrum] synonym: "os sacrum [vertebrae sacrales i - v]" EXACT [FMA:16202, FMA:TA] synonym: "sacral bone" EXACT [FMA:16202] synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202] synonym: "sacrum [sacral vertebrae i - v]" EXACT [FMA:16202] xref: AAO:0000552 xref: EFO:0003071 xref: FMA:16202 xref: GAID:241 xref: MESH:A.02.835.232.834.717 xref: OpenCyc:Mx4rvmBKnJwpEbGdrcN5Y29ycA xref: SCTID:264186006 xref: galen:Sacrum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ec/Gray95.png/200px-Gray95.png xref: ncithesaurus:Sacral_Bone is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0005179 ! pelvis organ is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001130 ! vertebral column relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0005473 ! sacral region property_value: "has_fused_element" UBERON:0001094 [Term] id: UBERON:0003691 name: epidural space namespace: uberon synonym: "extradural space" EXACT [FMA:71228] synonym: "spatium extradurale" EXACT [FMA:71228, FMA:TA] xref: FMA:71228 xref: GAID:243 xref: MESH:A.02.835.232.834.803.350 xref: SCTID:281866004 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003692 name: acromioclavicular joint namespace: uberon def: "The acromioclavicular joint, or AC joint, is a joint at the top of the shoulder. It is the junction between the acromion (part of the scapula that forms the highest point of the shoulder) and the clavicle. [WP,unvetted]." [Wikipedia:Acromioclavicular_joint] xref: FMA:25898 xref: GAID:249 xref: MESH:A.02.835.583.032 xref: OpenCyc:Mx4rwHhmSJwpEbGdrcN5Y29ycA xref: SCTID:182166001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray326.png/200px-Gray326.png xref: ncithesaurus:Acromioclavicular_Joint is_a: UBERON:0000982 ! skeletal joint is_a: UBERON:0001470 ! glenohumeral joint relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003693 name: retroperitoneal space namespace: uberon def: "anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side." [Wikipedia:Retroperitoneum] synonym: "retroperitoneum" EXACT [FMA:15080] xref: EFO:0002806 xref: FMA:15080 xref: GAID:25 xref: MESH:A.01.047.025.750 xref: SCTID:243983004 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray1126.png/200px-Gray1126.png xref: ncithesaurus:Retroperitoneum is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003684 ! abdominal cavity [Term] id: UBERON:0003694 name: atlanto-axial joint namespace: uberon synonym: "atlanto axial joint" RELATED [GAID:250] synonym: "atlantoaxial joint" RELATED [GAID:250] xref: FMA:25524 xref: GAID:250 xref: MESH:A.02.835.583.097 xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA xref: SCTID:361832004 xref: ncithesaurus:Atlanto-axial_Joint is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0003695 name: metacarpophalangeal joint namespace: uberon def: "The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]." [Wikipedia:Metacarpophalangeal_joint] comment: we follow FMA in making these joints part of digits synonym: "metacarpal joint" EXACT [FMA:35246] synonym: "metacarpo-phalangeal joint" EXACT [MA:0000453] synonym: "mp joint" EXACT [FMA:35246] xref: EMAPA:19302 xref: FMA:35246 xref: GAID:255 xref: MA:0000453 xref: MESH:A.02.835.583.345.512 xref: OpenCyc:Mx4rwNt8wJwpEbGdrcN5Y29ycA xref: SCTID:280995004 xref: galen:MetacarpoPhalangealJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/53/Gray337.png/200px-Gray337.png xref: ncithesaurus:Metacarpophalangeal_Joint is_a: UBERON:0001489 ! joint of hand [Term] id: UBERON:0003696 name: metatarsophalangeal joint namespace: uberon def: "The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral." [Wikipedia:Metatarsophalangeal_articulations] comment: we follow FMA in making these joints part of digits synonym: "metatarsal joint" EXACT [FMA:35222] synonym: "metatarsalphalangeal joint" RELATED [Wikipedia:Metatarsophalangeal_articulations] synonym: "metatarsophalangeal" RELATED [Wikipedia:Metatarsophalangeal_articulations] synonym: "metatarsophalangeal articulation" RELATED [Wikipedia:Metatarsophalangeal_articulations] xref: FMA:35222 xref: GAID:258 xref: MESH:A.02.835.583.378.531 xref: OpenCyc:Mx4rwCtS0pwpEbGdrcN5Y29ycA xref: SCTID:239747005 xref: galen:MetatarsoPhalangealJoint xref: ncithesaurus:Metatarsophalangeal_Joint is_a: UBERON:0001487 ! joint of foot [Term] id: UBERON:0003697 name: abdominal wall namespace: uberon synonym: "wall of abdomen" EXACT [FMA:259054] xref: FMA:10429 xref: FMA:259054 xref: GAID:26 xref: MESH:A.01.047.050 xref: SCTID:181613000 xref: ncithesaurus:Abdominal_Wall is_a: UBERON:0000060 ! anatomical wall [Term] id: UBERON:0003698 name: subtalar joint namespace: uberon synonym: "articulatio subtalaris" EXACT [FMA:35198, FMA:TA] synonym: "subtalar joint" EXACT [FMA:35198] synonym: "talocalcaneal joint" RELATED [GAID:260] xref: FMA:35198 xref: GAID:260 xref: MESH:A.02.835.583.378.831.780 xref: SCTID:182213007 xref: ncithesaurus:Subtalar_Joint is_a: UBERON:0001487 ! joint of foot is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0003699 name: pubic symphysis namespace: uberon def: "the firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments." [MP:0009575, Wikipedia:Pubic_symphysis] comment: In birds, the pubic symphysis is present only in the ostrich, and the two hip bones are usually widely separated, making it easier to lay large eggs - Romer, Alfred Sherwood; Parsons, Thomas S. (1977). The Vertebrate Body. Philadelphia, PA: Holt-Saunders International. pp. 188b192. ISBN 0-03-910284-X. subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "pubic symphyse" RELATED [GAID:267] synonym: "symphisis pubis" RELATED [Wikipedia:Pubic_symphysis] synonym: "symphysis pubis" EXACT [FMA:16950] xref: FMA:16950 xref: GAID:267 xref: MESH:A.02.835.583.656 xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA xref: SCTID:182200001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Gray321.png/200px-Gray321.png is_a: UBERON:0002216 ! symphysis is_a: UBERON:0005179 ! pelvis organ relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003700 name: temporomandibular joint namespace: uberon def: "A joint of the jaw. There are two TMJs, one on either side, working in unison. The name is derived from the two bones which form the joint: the upper temporal bone which is part of the cranium (skull), and the lower jaw bone called the mandible. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]." [Wikipedia:Temporomandibular_joint] synonym: "TMJ" EXACT [BTO:0003674, Wikipedia:Temporomandibular_joint] synonym: "articulatio temporomandibularis" RELATED [Wikipedia:Temporomandibular_joint] synonym: "tempero-mandibular joint" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temperomandibular joint" EXACT [HP:0010754] synonym: "temporalmandibular joint" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temporomandibular" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temporomandibular articulation" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temporomandibular joint" RELATED [Wikipedia:Temporomandibular_joint] xref: BTO:0003674 xref: EMAPA:19196 xref: FMA:54832 xref: GAID:272 xref: MA:0002899 xref: MESH:A.02.835.583.861 xref: SCTID:181814009 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000982 ! skeletal joint is_a: UBERON:0002217 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! synovial joint relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003701 name: achilles tendon namespace: uberon def: "The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone." [Wikipedia:Achilles_tendon] synonym: "achille's tendon" EXACT [] synonym: "calcaneal tendon" EXACT [FMA:51061] synonym: "tendo calcaneus" EXACT [MA:0002993] xref: FMA:51061 xref: GAID:277 xref: MA:0002993 xref: MESH:A.02.880.176 xref: OpenCyc:Mx4rvVjNX5wpEbGdrcN5Y29ycA xref: SCTID:181705009 xref: ncithesaurus:Achilles_Tendon is_a: UBERON:0000043 ! tendon is_a: UBERON:0004270 ! lower leg connective tissue is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001665 ! triceps surae [Term] id: UBERON:0003702 name: inguinal canal namespace: uberon def: "The inguinal canal is a passage in the anterior (toward the front of the body) abdominal wall which in men conveys the spermatic cord + the ilioinguinal nerve and in women the round ligament + the ilioinguinal nerve. The inguinal canal is larger and more prominent in men. [WP,unvetted]." [Wikipedia:Inguinal_canal] xref: EMAPA:19171 xref: EMAPA:26913 xref: FMA:19928 xref: GAID:28 xref: MESH:A.01.047.412 xref: SCTID:243966008 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray1227.png/200px-Gray1227.png is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0003703 name: extrahepatic bile duct namespace: uberon def: "the passages external to the liver for the conveyance of bile." [MP:0009498] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bile duct extrahepatic part" RELATED [MA:0002659] synonym: "extrahepatic biliary system" RELATED [GAID:281] xref: FMA:14678 xref: GAID:281 xref: MA:0002659 xref: MESH:A.03.159.183.079 xref: SCTID:276158002 xref: ncithesaurus:Extrahepatic_Bile_Duct is_a: UBERON:0002394 ! bile duct property_value: "spatially_disjoint_from" UBERON:0002107 [Term] id: UBERON:0003704 name: intrahepatic bile duct namespace: uberon def: "the passages within the liver for the conveyance of bile." [MP:0009497] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "bile duct intrahepatic part" EXACT [MA:0001630] xref: FMA:15766 xref: GAID:287 xref: MA:0001630 xref: MESH:A.03.159.183.158 xref: SCTID:362193005 xref: ZFA:0005169 xref: ncithesaurus:Intrahepatic_Bile_Duct is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0003705 name: meckel's diverticulum namespace: uberon def: "a small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct" [Wikipedia:Meckel's_diverticulum] comment: AO notes: finding in ncit synonym: "diverticulum of meckel" EXACT [FMA:14967] synonym: "ileal diverticulum" EXACT [FMA:14967] synonym: "meckel diverticulum" RELATED [GAID:317] synonym: "meckel's diverticulum" EXACT [FMA:14967] synonym: "meckels diverticulum" RELATED [GAID:317] xref: FMA:14967 xref: GAID:317 xref: MESH:A.03.492.411.620.484.612 xref: galen:MeckelsDiverticulum xref: ncithesaurus:Meckel_Diverticulum is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure relationship: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0003706 name: vocal cord namespace: uberon def: "Either of two pairs of folds of mucous membrane projecting into the larynx." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] synonym: "Stimmband" RELATED [BTO:0005084] synonym: "Stimmlippe" RELATED [BTO:0005084] synonym: "plica vocalis" RELATED [BTO:0005084] synonym: "true vocal cord" EXACT [FMA:55457] synonym: "vocal band" RELATED [BTO:0005084] synonym: "vocal chord" RELATED [BTO:0005084] synonym: "vocal cord" EXACT [FMA:55457] synonym: "vocal fold" RELATED [GAID:344] xref: BTO:0005084 xref: EMAPA:19181 xref: FMA:55457 xref: GAID:344 xref: MESH:A.04.329.364.737 xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA xref: SCTID:245504003 xref: ncithesaurus:Vocal_Cord is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0002486 ! glottis [Term] id: UBERON:0003707 name: sinus of valsalva namespace: uberon synonym: "aortic sinus" RELATED [GAID:472] synonym: "sinus of valsalva" EXACT [FMA:3745] synonym: "valsalva sinus" RELATED [GAID:472] xref: EMAPA:18625 xref: FMA:3745 xref: GAID:472 xref: MESH:A.07.231.114.056.847 is_a: UBERON:0000947 ! aorta relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003708 name: carotid sinus namespace: uberon def: "In human anatomy, the carotid sinus is a localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation. A synonym for the carotid sinus is the carotid bulb. [WP,unvetted]." [Wikipedia:Carotid_sinus] xref: EMAPA:19320 xref: FMA:50094 xref: GAID:482 xref: MESH:A.07.231.114.186.456 xref: SCTID:281137000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png is_a: UBERON:0001530 ! common carotid artery plus branches [Term] id: UBERON:0003709 name: circle of Willis namespace: uberon def: "a circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle" [Wikipedia:Circle_of_Willis] comment: In zebrafish, the circle of vessels comprised of the basal communicating artery (BCA) and posterior communicating segments (PCS) superficially resemble but are not homologous to the human circle of Willis[http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html]. Editor note: synonym: "Willis circle" RELATED [GAID:486] synonym: "arterial circle" BROAD [Wikipedia:Circle_of_Willis] synonym: "arterial circle of Willis" EXACT [] synonym: "cerebral arterial circle" RELATED [GAID:486] xref: EHDAA2:0000252 xref: EHDAA:9758 xref: FMA:50454 xref: GAID:486 xref: MESH:A.07.231.114.228.351 xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA xref: SCTID:362047009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0003710 name: vasa vasorum namespace: uberon def: "Nutrient blood vessels which supply the walls of large arteries or veins." [MESH:A.07.231.836, http://en.wikipedia.org/wiki/Vasa_vasorum] comment: Taxon notes: The aorta of swine contains a vaso vasorum like humans - http://www.nal.usda.gov/awic/pubs/swine/swine.htm#art xref: FMA:77433 xref: GAID:526 xref: MESH:A.07.231.836 xref: SCTID:7524009 xref: ncithesaurus:Vasa_Vasorum is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003711 name: brachiocephalic vein namespace: uberon def: "The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava." [Wikipedia:Brachiocephalic_vein] synonym: "brachiocephalic venous tree" EXACT [FMA:4723] synonym: "innomiate vein" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "innominate trunk" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "innominate vein" EXACT [FMA:4723, GAID:529, Wikipedia:Brachiocephalic_vein] synonym: "innominate veins" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "vena brachiocephalica" RELATED [Wikipedia:Brachiocephalic_vein] xref: EHDAA2:0000182 xref: EHDAA:9868 xref: FMA:4723 xref: GAID:529 xref: MESH:A.07.231.908.130 xref: OpenCyc:Mx4rvz3aUJwpEbGdrcN5Y29ycA xref: SCTID:181371003 xref: galen:BrachiocephalicVein xref: ncithesaurus:Innominate_Vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0007204 ! brachiocephalic vasculature [Term] id: UBERON:0003712 name: cavernous sinus namespace: uberon xref: EMAPA:19059 xref: FMA:50772 xref: GAID:532 xref: MESH:A.07.231.908.224.334 xref: OpenCyc:Mx4rwKAVGJwpEbGdrcN5Y29ycA xref: SCTID:244402005 xref: ncithesaurus:Cavernous_Sinus is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003713 name: splenic vein namespace: uberon def: "In anatomy, the splenic vein (in the past called the lienal vein) is the blood vessel that drains blood from the spleen. It joins with the superior mesenteric vein, to form the hepatic portal vein and follows a course superior to the pancreas, alongside of the similarly named artery, the splenic artery. It collects branches from the stomach and pancreas and most notably from the large intestine, which is drained by the inferior mesenteric vein and joins with splenic vein shortly before it forms the portal vein. [WP,unvetted]." [Wikipedia:Splenic_vein] xref: FMA:14331 xref: GAID:541 xref: MESH:A.07.231.908.670.730 xref: OpenCyc:Mx4rwCt0eZwpEbGdrcN5Y29ycA xref: SCTID:278029005 xref: galen:SplenicVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5b/Gray1189.png/200px-Gray1189.png xref: ncithesaurus:Splenic_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003714 name: neural tissue namespace: uberon def: "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] comment: FMA definition includes vasculature synonym: "nerve tissue" EXACT [FMA:9642] synonym: "nervous tissue" EXACT [FMA:9642] synonym: "portion of neural tissue" EXACT [FMA:9642] xref: AAO:0000325 xref: AEO:0000123 xref: EHDAA2:0003123 xref: FMA:9642 xref: GAID:609 xref: MESH:A.08.561 xref: OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ xref: SCTID:91728009 xref: ncithesaurus:Nervous_Tissue is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001016 ! nervous system disjoint_from: UBERON:0004755 ! skeletal tissue [Term] id: UBERON:0003715 name: splanchnic nerve namespace: uberon def: "the major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318] xref: FMA:5883 xref: GAID:800 xref: MESH:A.08.800.050.050.800 xref: SCTID:264198001 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0003716 name: recurrent laryngeal nerve namespace: uberon synonym: "inferior laryngeal nerve" RELATED [GAID:804] xref: FMA:6246 xref: GAID:804 xref: MESH:A.08.800.050.050.925.450.700 xref: SCTID:24227007 is_a: UBERON:0002003 ! peripheral nerve [Term] id: UBERON:0003717 name: golgi-mazzoni corpuscle namespace: uberon synonym: "corpuscle of golgi-mazzoni" EXACT [FMA:83609] synonym: "golgi mazzoni corpuscle" RELATED [GAID:817] synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609] xref: FMA:83609 xref: GAID:817 xref: MESH:A.08.800.550.700.500.300 xref: SCTID:37419002 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003718 name: muscle spindle namespace: uberon def: "the sensory organs in muscle that are involved in the stretch reflex." [MP:0004069] synonym: "muscle stretch receptor" RELATED [GAID:819] synonym: "neuromuscular spindle" EXACT [FMA:83607, GAID:819] xref: FMA:83607 xref: GAID:819 xref: MESH:A.08.800.550.700.500.500 xref: SCTID:12945004 xref: ncithesaurus:Muscle_Spindle is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003719 name: pacinian corpuscle namespace: uberon def: "any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [MP:0000988, Wikipedia:Pacinian_corpuscle] xref: FMA:83604 xref: GAID:820 xref: MESH:A.08.800.550.700.500.700 xref: NIF_Subcellular:FMA_83604 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray935.png/200px-Gray935.png is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0003720 name: anterior cranial fossa namespace: uberon def: "The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae." [Wikipedia:Anterior_cranial_fossa] synonym: "anterior fossa" BROAD [] xref: FMA:9682 xref: GAID:83 xref: MESH:A.01.456.830.150 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png xref: ncithesaurus:Anterior_Fossa is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003721 name: lingual nerve namespace: uberon xref: FMA:53218 xref: GAID:835 xref: MESH:A.08.800.800.120.760.500.450 xref: SCTID:280260006 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0003722 name: middle cranial fossa namespace: uberon def: "The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]." [MESH:A.01.456.830.165, Wikipedia:Middle_cranial_fossa] synonym: "middle fossa" BROAD [Wikipedia:Middle_cranial_fossa] xref: FMA:54369 xref: GAID:84 xref: MESH:A.01.456.830.165 xref: ncithesaurus:Middle_Fossa is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003723 name: vestibular nerve namespace: uberon def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [Wikipedia:Vestibular_nerve] synonym: "scarpa ganglion" RELATED [GAID:840] synonym: "scarpa's ganglion" RELATED [GAID:840] synonym: "scarpas ganglion" RELATED [GAID:840] synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401] synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401] synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111] xref: EHDAA2:0002200 xref: FMA:53401 xref: GAID:840 xref: MA:0001111 xref: MESH:A.08.800.800.120.910.900 xref: OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA xref: SCTID:362464003 xref: VHOG:0001181 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg/200px-Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg xref: ncithesaurus:Vestibular_Nerve is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0003724 name: musculocutaneous nerve namespace: uberon def: "The musculocutaneous nerve arises from the lateral cord of the brachial plexus, opposite the lower border of the Pectoralis minor, its fibers being derived from C5, C6, C7. [WP,unvetted]." [Wikipedia:Musculocutaneous_nerve] synonym: "casserio's nerve" EXACT [FMA:37064] xref: FMA:37064 xref: GAID:844 xref: MESH:A.08.800.800.720.050.540 xref: OpenCyc:Mx4rvzp0l5wpEbGdrcN5Y29ycA xref: SCTID:181019000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif is_a: UBERON:0002003 ! peripheral nerve [Term] id: UBERON:0003725 name: cervical plexus namespace: uberon def: "The cervical plexus is a plexus of the ventral rami of the first four cervical spinal nerves which are located from C1 to C5 cervical segment in the neck. They are located laterally to the transverse processes between prevertebral muscles from the medial side and vertebral from lateral side. Here there is anastomosis with accessory nerve, hypoglossal nerve and sympathetic trunk. It is located in the neck, deep to sternocleidomastoid. Nerves formed from the cervical plexus innervate the back of the head, as well as some neck muscles. The branches of the cervical plexus emerge from the posterior triangle at the nerve point, a point which lies midway on the posterior border of the Sternocleidomastoid[WP]." [Wikipedia:Cervical_plexus] synonym: "cervical nerve plexus" EXACT [FMA:5904] synonym: "cervical plexus" EXACT [FMA:5904] synonym: "plexus cervicalis" EXACT [FMA:5904, FMA:TA] xref: FMA:5904 xref: GAID:847 xref: MESH:A.08.800.800.720.150 xref: OpenCyc:Mx4rvkEE3JwpEbGdrcN5Y29ycA xref: SCTID:181107005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Gray784.png/200px-Gray784.png is_a: UBERON:0001813 ! somatic nerve plexus [Term] id: UBERON:0003726 name: thoracic nerve namespace: uberon def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A.08.800.800.720.800] synonym: "pectoral nerve" RELATED [GAID:857] synonym: "thoracic spinal nerve" EXACT [FMA:5860] xref: FMA:5860 xref: GAID:857 xref: MESH:A.08.800.800.720.800 xref: OpenCyc:Mx4rwSJp_ZwpEbGdrcN5Y29ycA xref: SCTID:360498003 is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0003727 name: intercostal nerve namespace: uberon def: "The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]." [Wikipedia:Intercostal_nerves] synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028] synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028] synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028] synonym: "thoracic anterior ramus" EXACT [FMA:6028] synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028] xref: EMAPA:18227 xref: FMA:6028 xref: GAID:858 xref: MESH:A.08.800.800.720.800.350 xref: SCTID:279568001 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray819.png/200px-Gray819.png xref: ncithesaurus:Intercostal_Nerve is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0003728 name: mediastinum namespace: uberon def: "The mediastinum is a non-delineated group of structures in the thorax, surrounded by loose connective tissue. It is the central compartment of the thoracic cavity. It contains the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. The mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm." [Wikipedia:Mediastinum] synonym: "mediastinal part of chest" EXACT [FMA:9826] xref: EFO:0003057 xref: FMA:9826 xref: GAID:94 xref: MESH:A.01.911.800.500 xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA xref: SCTID:181217005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Mediastinum.png/200px-Mediastinum.png xref: ncithesaurus:Mediastinum is_a: UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003729 name: mouth mucosa namespace: uberon def: "the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized." [Wikipedia:Oral_mucosa] comment: ncit split mouth/oral mucosa into lip and buccal synonym: "adult mouth mucosa" EXACT [OBOL:automatic] synonym: "adult mouth mucosa of organ" EXACT [OBOL:automatic] synonym: "adult mouth mucous membrane" EXACT [OBOL:automatic] synonym: "adult mouth organ mucosa" EXACT [OBOL:automatic] synonym: "buccal mucosa" RELATED [GAID:951] synonym: "mouth mucosa" EXACT [FMA:59660] synonym: "mouth mucosa of organ" EXACT [OBOL:automatic] synonym: "mouth mucous membrane" EXACT [OBOL:automatic] synonym: "mouth organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of adult mouth" EXACT [OBOL:automatic] synonym: "mucosa of mouth" EXACT [OBOL:automatic] synonym: "mucosa of organ of adult mouth" EXACT [OBOL:automatic] synonym: "mucosa of organ of mouth" EXACT [OBOL:automatic] synonym: "mucosal lining of mouth" RELATED [MA:0002794] synonym: "mucous membrane of adult mouth" EXACT [OBOL:automatic] synonym: "mucous membrane of mouth" EXACT [FMA:59660] synonym: "oral mucosa" RELATED [GAID:951] synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660] synonym: "organ mucosa of adult mouth" EXACT [OBOL:automatic] synonym: "organ mucosa of mouth" EXACT [OBOL:automatic] synonym: "tunica mucosa oris" EXACT [FMA:59660, FMA:TA] xref: BTO:0002860 xref: FMA:59660 xref: GAID:951 xref: MA:0002794 xref: MESH:A.10.615.550.599 xref: ncithesaurus:Oral_Mucosa is_a: UBERON:0000344 ! mucosa is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0003820 name: prostate bud namespace: uberon def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513] comment: AR activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth. There are three phases of prostatic budding: (1) the specification phase, when instructive developmental cues define where buds will form in the UGS, (2) the initiation phase, when prostatic buds begin to form, and (3) the elongation phase, when proliferation, cell adhesion, and cell migration coordinate outgrowth of prostatic buds into UGM. Timing of prostatic bud formation and the quantity and pattern of buds that are formed in the UGS are strictly regulated [3, 4]. The position of prostatic buds as they emerge from the UGS in utero determines the arrangement of prostate ducts in adulthood.[PMID:18977204] synonym: "prostate ductal progenitor" EXACT [PMID:18977204] synonym: "prostatic bud" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003821 name: metacarpal/metatarsal bone namespace: uberon synonym: "cannon bone" NARROW SENSU [UBERON:cjm] synonym: "metacarpal or metatarsal bone" EXACT [] synonym: "metacarpal/metatarsal" EXACT [] synonym: "metapodium bone" EXACT [UBERON:cjm, http://en.wiktionary.org/wiki/metapodial] xref: MA:0000301 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003606 ! limb long bone relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0003822 name: forelimb stylopod namespace: uberon def: "A stylopod that is part of a forelimb [Obol]." [OBOL:automatic] comment: WP states: anatomical usage, the term arm refers specifically to the segment between the shoulder and the elbow, while the segment between the elbow and wrist is the forearm. However, in common, literary, and historical usage, arm refers to the entire upper limb from shoulder to wrist. FMA uses the term Arm for this class, so we place it here. // comment: todo - check fore propodium in AAO // Naming conventions for pod terms under discussion within phenoscape group synonym: "arm" RELATED INCONSISTENT [FMA:24890] synonym: "brachial region" EXACT [] synonym: "forelimb stylopodial element" EXACT [MA:th] synonym: "forelimb stylopodium" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb" EXACT [] synonym: "regio brachialis" EXACT [FMA:24890, FMA:TA] synonym: "stylopod of arm" EXACT [] synonym: "stylopod of forelimb" EXACT [] synonym: "upper arm" EXACT [MA:0000035] xref: EHDAA2:0002112 xref: EHDAA:4186 xref: EHDAA:6234 xref: EMAPA:17424 xref: FMA:24890 xref: MA:0000035 xref: MESH:A.01.378.800.075 xref: OpenCyc:Mx4rvVj0Z5wpEbGdrcN5Y29ycA xref: SCTID:302538001 xref: VHOG:0000343 xref: galen:Arm xref: ncithesaurus:Arm is_a: UBERON:0002472 ! stylopod is_a: UBERON:0008785 ! upper limb segment relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003823 name: hindlimb zeugopod namespace: uberon def: "A zeugopod that is part of a hindlimb [Obol]." [OBOL:automatic] comment: note that FMA:24979 denotes the middle segment (zeugopod), its placement here is correct. See obo-anatomy archives for discussion // Naming conventions for pod terms under discussion within phenoscape group synonym: "calf" NARROW [] synonym: "calf of leg" EXACT [FMA:24984] synonym: "crus" RELATED [] synonym: "crus of hindlimb" RELATED [] synonym: "hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "hind limb zeugopod" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "hindlimb zeugopodium" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb" EXACT [FMA:24979] synonym: "leg" RELATED INCONSISTENT [FMA:24979, MESH:A.01.378.610.500] synonym: "lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "lower leg" EXACT [] synonym: "middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "posterior curral region" EXACT [FMA:24984] synonym: "posterior leg region" EXACT [FMA:24984] synonym: "posterior part of leg" EXACT [FMA:24984] synonym: "posterior region of leg" EXACT [FMA:24984] synonym: "regio cruris posterior" EXACT [FMA:24984, FMA:TA] synonym: "regio surae" EXACT [FMA:24984, FMA:TA] synonym: "shank" RELATED [] synonym: "sura" EXACT [FMA:24984, FMA:TA] synonym: "sural region" EXACT [FMA:24984] synonym: "zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb" EXACT [OBOL:automatic] xref: EFO:0003051 xref: EHDAA2:0001030 xref: EHDAA:5165 xref: EHDAA:6190 xref: EMAPA:17496 xref: FMA:24979 xref: FMA:24984 xref: MA:0000051 xref: MESH:A.01.378.610.500 xref: OpenCyc:Mx4rvczZBpwpEbGdrcN5Y29ycA xref: SCTID:244015008 xref: VHOG:0000348 xref: galen:Leg xref: ncithesaurus:Leg is_a: UBERON:0002471 ! zeugopod is_a: UBERON:0008784 ! lower limb segment relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003824 name: thoracic segment nerve namespace: uberon def: "A nerve that is part of a thorax [Obol]." [OBOL:automatic] synonym: "nerve of thorax" EXACT [OBOL:automatic] synonym: "thorax nerve" EXACT [OBOL:automatic] synonym: "upper body nerve" RELATED [MA:0000562] xref: MA:0000562 xref: MESH:A.08.800.800.720.800 is_a: UBERON:0003439 ! trunk nerve [Term] id: UBERON:0003825 name: abdominal segment nerve namespace: uberon def: "A nerve that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk nerve" EXACT [OBOL:automatic] synonym: "nerve of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000528 is_a: UBERON:0003439 ! trunk nerve [Term] id: UBERON:0003826 name: upper leg bone namespace: uberon def: "A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] xref: MA:0000682 is_a: UBERON:0003464 ! hindlimb bone is_a: UBERON:0005893 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! leg bone [Term] id: UBERON:0003827 name: thoracic segment bone namespace: uberon def: "A bone that is part of a thorax [Obol]." [OBOL:automatic] synonym: "bone of thorax" EXACT [OBOL:automatic] synonym: "bone organ of thorax" EXACT [OBOL:automatic] synonym: "thorax bone" EXACT [OBOL:automatic] synonym: "thorax bone organ" EXACT [OBOL:automatic] synonym: "upper body bone" RELATED [MA:0000559] xref: MA:0000559 xref: SCTID:426649006 is_a: UBERON:0003463 ! trunk bone is_a: UBERON:0005181 ! thoracic segment organ [Term] id: UBERON:0003828 name: abdominal segment bone namespace: uberon def: "A bone that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk bone" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk bone organ" EXACT [OBOL:automatic] synonym: "bone of abdominal segment of trunk" EXACT [OBOL:automatic] synonym: "bone organ of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000525 is_a: UBERON:0003463 ! trunk bone is_a: UBERON:0005173 ! abdominal segment organ [Term] id: UBERON:0003829 name: urethra muscle namespace: uberon def: "A muscle organ that is part of a urethra [Obol]." [OBOL:automatic] comment: AO notes: FMA class may not be equivalent synonym: "muscle layer of urethra" RELATED [FMA:76909] synonym: "muscle organ of urethra" EXACT [OBOL:automatic] synonym: "urethra muscle organ" EXACT [OBOL:automatic] synonym: "urethral muscle layer" RELATED [MA:0002649] xref: FMA:76909 xref: MA:0002649 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0003830 name: thoracic segment muscle namespace: uberon def: "A muscle organ that is part of a thorax [Obol]." [OBOL:automatic] synonym: "muscle organ of thorax" EXACT [OBOL:automatic] synonym: "thorax muscle organ" EXACT [OBOL:automatic] synonym: "upper body muscle" RELATED [MA:0000561] xref: MA:0000561 is_a: UBERON:0001774 ! muscle of trunk is_a: UBERON:0005181 ! thoracic segment organ [Term] id: UBERON:0003831 name: respiratory system muscle namespace: uberon def: "A muscle organ that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system muscle organ" EXACT [OBOL:automatic] xref: MA:0001828 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0003832 name: esophagus muscle namespace: uberon def: "A muscle organ that is part of a esophagus [Obol]." [OBOL:automatic] comment: todo - split muscle vs muscle layer? MA subdivides into skeletal/smooth, wth smooth divided into circular and longitudinal synonym: "esophagus muscle organ" EXACT [OBOL:automatic] synonym: "gullet muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of esophagus" EXACT [OBOL:automatic] synonym: "muscle organ of gullet" EXACT [OBOL:automatic] synonym: "muscle organ of oesophagus" EXACT [OBOL:automatic] synonym: "oesophagus muscle organ" EXACT [OBOL:automatic] xref: FMA:62998 xref: MA:0002682 xref: SCTID:360961009 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003830 ! thoracic segment muscle is_a: UBERON:0005178 ! thoracic cavity organ relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0003833 name: abdominal segment muscle namespace: uberon def: "A muscle organ that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000527 is_a: UBERON:0001774 ! muscle of trunk is_a: UBERON:0005173 ! abdominal segment organ [Term] id: UBERON:0003834 name: thoracic segment blood vessel namespace: uberon def: "A blood vessel that is part of a thorax [Obol]." [OBOL:automatic] synonym: "blood vessel of thorax" EXACT [OBOL:automatic] synonym: "thorax blood vessel" EXACT [OBOL:automatic] synonym: "upper body blood vessel" RELATED [MA:0000558] xref: MA:0000558 is_a: UBERON:0003513 ! trunk blood vessel [Term] id: UBERON:0003835 name: abdominal segment blood vessel namespace: uberon def: "A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000524 is_a: UBERON:0003513 ! trunk blood vessel [Term] id: UBERON:0003836 name: abdominal segment skin namespace: uberon def: "A skin of body that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk skin" EXACT [OBOL:automatic] synonym: "skin of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000530 is_a: UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003837 name: thoracic segment connective tissue namespace: uberon def: "A portion of connective tissue that is part of a thorax [Obol]." [OBOL:automatic] synonym: "connective tissue of thorax" EXACT [OBOL:automatic] synonym: "portion of connective tissue of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of thorax" EXACT [OBOL:automatic] synonym: "thorax connective tissue" EXACT [OBOL:automatic] synonym: "thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "thorax textus connectivus" EXACT [OBOL:automatic] synonym: "upper body connective tissue" RELATED [MA:0000560] xref: MA:0000560 is_a: UBERON:0003586 ! trunk connective tissue [Term] id: UBERON:0003838 name: abdominal segment connective tissue namespace: uberon def: "A portion of connective tissue that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk connective tissue" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic] synonym: "textus connectivus of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000526 is_a: UBERON:0003586 ! trunk connective tissue [Term] id: UBERON:0003839 name: forelimb joint namespace: uberon def: "A limb joint that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb joint of limb" EXACT [OBOL:automatic] synonym: "anteriormost limb limb joint" EXACT [OBOL:automatic] synonym: "fore limb joint of limb" EXACT [OBOL:automatic] synonym: "fore limb limb joint" EXACT [OBOL:automatic] synonym: "forelimb joint of limb" EXACT [OBOL:automatic] synonym: "forelimb limb joint" EXACT [OBOL:automatic] synonym: "joint of limb of anteriormost limb" EXACT [OBOL:automatic] synonym: "joint of limb of fore limb" EXACT [OBOL:automatic] synonym: "joint of limb of forelimb" EXACT [OBOL:automatic] synonym: "joint of limb of superior member" EXACT [OBOL:automatic] synonym: "joint of limb of upper extremity" EXACT [OBOL:automatic] synonym: "limb joint of anteriormost limb" EXACT [OBOL:automatic] synonym: "limb joint of fore limb" EXACT [OBOL:automatic] synonym: "limb joint of forelimb" EXACT [OBOL:automatic] synonym: "limb joint of superior member" EXACT [OBOL:automatic] synonym: "limb joint of upper extremity" EXACT [OBOL:automatic] synonym: "superior member joint of limb" EXACT [OBOL:automatic] synonym: "superior member limb joint" EXACT [OBOL:automatic] synonym: "upper extremity joint of limb" EXACT [OBOL:automatic] synonym: "upper extremity limb joint" EXACT [OBOL:automatic] xref: EMAPA:19204 xref: MA:0000614 is_a: UBERON:0003657 ! limb joint [Term] id: UBERON:0003840 name: hindlimb joint namespace: uberon def: "A limb joint that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb joint of limb" EXACT [OBOL:automatic] synonym: "hind limb limb joint" EXACT [OBOL:automatic] synonym: "hindlimb joint of limb" EXACT [OBOL:automatic] synonym: "hindlimb limb joint" EXACT [OBOL:automatic] synonym: "inferior member joint of limb" EXACT [OBOL:automatic] synonym: "inferior member limb joint" EXACT [OBOL:automatic] synonym: "joint of limb of hind limb" EXACT [OBOL:automatic] synonym: "joint of limb of hindlimb" EXACT [OBOL:automatic] synonym: "joint of limb of inferior member" EXACT [OBOL:automatic] synonym: "joint of limb of lower extremity" EXACT [OBOL:automatic] synonym: "limb joint of hind limb" EXACT [OBOL:automatic] synonym: "limb joint of hindlimb" EXACT [OBOL:automatic] synonym: "limb joint of inferior member" EXACT [OBOL:automatic] synonym: "limb joint of lower extremity" EXACT [OBOL:automatic] synonym: "lower extremity joint of limb" EXACT [OBOL:automatic] synonym: "lower extremity limb joint" EXACT [OBOL:automatic] xref: MA:0000662 is_a: UBERON:0003657 ! limb joint [Term] id: UBERON:0003841 name: autopod joint namespace: uberon def: "A limb joint that is part of an autopod [Obol]." [OBOL:automatic] synonym: "autopod joint of limb" EXACT [OBOL:automatic] synonym: "autopod limb joint" EXACT [OBOL:automatic] synonym: "distal free limb segment joint of limb" EXACT [OBOL:automatic] synonym: "distal free limb segment limb joint" EXACT [OBOL:automatic] synonym: "joint of limb of autopod" EXACT [OBOL:automatic] synonym: "joint of limb of distal free limb segment" EXACT [OBOL:automatic] synonym: "limb joint of autopod" EXACT [OBOL:automatic] synonym: "limb joint of distal free limb segment" EXACT [OBOL:automatic] synonym: "paw joint" RELATED [MA:0002715] xref: MA:0002715 is_a: UBERON:0003657 ! limb joint [Term] id: UBERON:0003842 name: neural tube lumen namespace: uberon alt_id: UBERON:0005713 comment: TODO - check synonym: "cavity of neural tube" EXACT [UBERON:cjm] synonym: "lumen of neural tube" EXACT [UBERON:cjm] synonym: "neural lumen" RELATED [EHDAA:2889] synonym: "neural tube neural lumen" EXACT [EHDAA2:0001269] xref: AAO:0011073 xref: EHDAA2:0001269 xref: EHDAA:2889 xref: EHDAA:914 xref: EMAPA:16167 xref: EMAPA:16533 xref: VHOG:0001119 xref: XAO:0000252 is_a: UBERON:0005082 ! tube lumen relationship: part_of UBERON:0002346 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! neurectoderm [Term] id: UBERON:0003843 name: dental epithelium namespace: uberon def: "Epithelium that is part of a developing tooth or dental organ." [ZFIN:curator] comment: Development notes: In the developing molar dentition of the mouse, tooth inductive po- tential resides in the dental epithelium until embryonic day (E)12.5 (3). Thereafter, tooth inductive potential shifts to neural crest-derived dental mesenchyme, which acquires the ability to direct tooth formation in nonodontogenic tissues (3, 4)[PMID:10954731] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dental epithelia" EXACT PLURAL [ZFA:0005134] synonym: "dental epithelium" EXACT [ZFA:0005134] synonym: "tootg epithelium" EXACT [] xref: AAO:0011027 xref: BTO:0001723 xref: EMAPA:17922 xref: EMAPA:17943 xref: VHOG:0001443 xref: XAO:0003203 xref: ZFA:0005134 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000483 ! epithelium is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004807 ! respiratory system epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0003844 name: upper eyelid epithelium namespace: uberon def: "An epithelium that is part of a upper eyelid [Obol]." [OBOL:automatic] synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic] synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic] synonym: "epithelium of upper eyelid" EXACT [OBOL:automatic] synonym: "superior eyelid epithelial tissue" EXACT [OBOL:automatic] synonym: "superior eyelid epithelium" EXACT [OBOL:automatic] synonym: "upper eyelid epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0002116 xref: EMAPA:17835 xref: VHOG:0000638 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0003845 name: lower eyelid epithelium namespace: uberon def: "An epithelium that is part of a lower eyelid [Obol]." [OBOL:automatic] synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic] synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic] synonym: "epithelium of lower eyelid" EXACT [OBOL:automatic] synonym: "inferior eyelid epithelial tissue" EXACT [OBOL:automatic] synonym: "inferior eyelid epithelium" EXACT [OBOL:automatic] synonym: "lower eyelid epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0001016 xref: EMAPA:17832 xref: VHOG:0000637 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0003846 name: thymus epithelium namespace: uberon def: "the supporting framework of the thymus." [MP:0009544] synonym: "epithelial tissue of thymus" EXACT [OBOL:automatic] synonym: "epithelial tissue of thymus gland" EXACT [OBOL:automatic] synonym: "epithelium of thymus" EXACT [OBOL:automatic] synonym: "epithelium of thymus gland" EXACT [OBOL:automatic] synonym: "thymic epithelial tissue" EXACT [] synonym: "thymic epithelium" EXACT [BTO:0001836] synonym: "thymus epithelial tissue" EXACT [OBOL:automatic] synonym: "thymus gland epithelial tissue" EXACT [OBOL:automatic] synonym: "thymus gland epithelium" EXACT [OBOL:automatic] xref: BTO:0001836 xref: EHDAA2:0002019 xref: MA:0000768 xref: VHOG:0001426 xref: ncithesaurus:Thymic_Epithelial_Tissue is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0003847 name: thyroid artery namespace: uberon xref: AAO:0010490 xref: EHDAA2:0002029 xref: EHDAA:7372 xref: EMAPA:18622 xref: MA:0002066 xref: VHOG:0001366 xref: ncithesaurus:Thyroid_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003848 name: gonadal vein namespace: uberon def: "In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]." [Wikipedia:Gonadal_vein] synonym: "gonad vein" EXACT [OBOL:automatic] synonym: "gonada vein" EXACT [OBOL:automatic] synonym: "vein of gonad" EXACT [OBOL:automatic] synonym: "vein of gonada" EXACT [OBOL:automatic] xref: EHDAA2:0000719 xref: EHDAA:8703 xref: OpenCyc:Mx4rvlWYh5wpEbGdrcN5Y29ycA xref: SCTID:278192008 xref: VHOG:0001340 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003849 name: mesencephalic neural crest namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mesencephalic neural crest" EXACT [ZFA:0000935] synonym: "neural crest midbrain" EXACT [ZFA:0000935] xref: EFO:0003591 xref: EHDAA2:0001101 xref: EHDAA:360 xref: VHOG:0000796 xref: ZFA:0000935 is_a: UBERON:0002342 ! neural crest is_a: UBERON:0003099 ! cranial neural crest [Term] id: UBERON:0003850 name: telencephalon neural crest namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "neural crest telencephalon" EXACT [ZFA:0000812] xref: EFO:0003574 xref: RETIRED_EHDAA2:0001991 xref: VHOG:0000799 xref: ZFA:0000812 is_a: UBERON:0002342 ! neural crest is_a: UBERON:0003099 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranial neural crest [Term] id: UBERON:0003851 name: diencephalon neural crest namespace: uberon synonym: "diencephalic neural crest" EXACT [ZFA:0000811] synonym: "future diencephalon neural crest" EXACT [EHDAA2:0000603] synonym: "neural crest diencephalon" EXACT [ZFA:0000811] synonym: "neural crest of future diencephalon" EXACT [EMAPA:16518] xref: EFO:0003573 xref: EHDAA2:0000603 xref: EMAPA:16518 xref: VHOG:0000798 xref: ZFA:0000811 is_a: UBERON:0002342 ! neural crest is_a: UBERON:0003099 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranial neural crest [Term] id: UBERON:0003852 name: rhombencephalon neural crest namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "neural crest hindbrain" EXACT [ZFA:0007063] synonym: "rhombencephalic neural crest" EXACT [ZFA:0007063] xref: EHDAA2:0001628 xref: EHDAA:362 xref: VHOG:0001210 xref: ZFA:0007063 is_a: UBERON:0002342 ! neural crest is_a: UBERON:0003099 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! cranial neural crest [Term] id: UBERON:0003853 name: spinal cord neural crest namespace: uberon xref: EHDAA:696 xref: EMAPA:16094 xref: EMAPA:16163 xref: EMAPA:16529 xref: EMAPA:16881 xref: VHOG:0001006 is_a: UBERON:0002342 ! neural crest [Term] id: UBERON:0003854 name: spinal cord neural plate namespace: uberon synonym: "neural plate of spinal cord" EXACT [OBOL:automatic] xref: VHOG:0000439 xref: ZFA:0007021 is_a: UBERON:0003075 ! neural plate relationship: part_of UBERON:0003057 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! chordal neural plate [Term] id: UBERON:0003855 name: gonad mesenchyme namespace: uberon def: "A mesenchyme that is part of a gonad [Obol]." [OBOL:automatic] synonym: "gonada mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad" EXACT [OBOL:automatic] synonym: "mesenchyme of gonada" EXACT [OBOL:automatic] xref: EHDAA:5012 xref: EMAPA:16858 xref: EMAPA:17385 xref: VHOG:0001090 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0003856 name: dental mesenchyme namespace: uberon def: "Mesenchyme enclosed by dental organ." [ZFIN:curator] comment: TODO - neural crest contributions subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dental organ mesenchyme" EXACT [OBOL:automatic] synonym: "enamel organ mesenchyme" EXACT [OBOL:automatic] synonym: "tooth enamel organ mesenchyme" EXACT [OBOL:automatic] synonym: "tooth mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17920 xref: EMAPA:17923 xref: EMAPA:17941 xref: EMAPA:17944 xref: VHOG:0001444 xref: ZFA:0005139 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0003857 name: upper eyelid mesenchyme namespace: uberon def: "A mesenchyme that is part of a upper eyelid [Obol]." [OBOL:automatic] synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic] synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0002117 xref: EHDAA:9051 xref: VHOG:0001093 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003858 name: lower eyelid mesenchyme namespace: uberon def: "A mesenchyme that is part of a lower eyelid [Obol]." [OBOL:automatic] synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic] xref: EHDAA2:0001017 xref: EHDAA:9045 xref: VHOG:0001036 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003859 name: forelimb mesenchyme namespace: uberon def: "A mesenchyme that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb mesenchyme" EXACT [OBOL:automatic] synonym: "fore limb mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of anteriormost limb" EXACT [OBOL:automatic] synonym: "mesenchyme of fore limb" EXACT [OBOL:automatic] synonym: "mesenchyme of forelimb" EXACT [OBOL:automatic] synonym: "mesenchyme of superior member" EXACT [OBOL:automatic] synonym: "mesenchyme of upper extremity" EXACT [OBOL:automatic] synonym: "superior member mesenchyme" EXACT [OBOL:automatic] synonym: "upper extremity mesenchyme" EXACT [OBOL:automatic] synonym: "wing mesenchyme" NARROW SENSU [Geisha:syn] xref: VHOG:0001109 is_a: UBERON:0009749 ! limb mesenchyme [Term] id: UBERON:0003860 name: hindlimb mesenchyme namespace: uberon def: "A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb mesenchyme" EXACT [OBOL:automatic] synonym: "inferior member mesenchyme" EXACT [OBOL:automatic] synonym: "lower extremity mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of hind limb" EXACT [OBOL:automatic] synonym: "mesenchyme of hindlimb" EXACT [OBOL:automatic] synonym: "mesenchyme of inferior member" EXACT [OBOL:automatic] synonym: "mesenchyme of lower extremity" EXACT [OBOL:automatic] xref: VHOG:0001074 is_a: UBERON:0009749 ! limb mesenchyme [Term] id: UBERON:0003861 name: vertebral arch namespace: uberon def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [Wikipedia:Vertebral_arch] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "arch of vertebra" EXACT [FMA:11946] synonym: "arcus vertebra" EXACT [Wikipedia:Vertebral_arch] synonym: "arcus vertebrae" EXACT PLURAL [Wikipedia:Vertebral_arch] synonym: "arcus vertebrae (vertebralis)" EXACT [FMA:11946] synonym: "dorsal arcocentrum" EXACT [ZFA:0001066] synonym: "neural arch" EXACT [] synonym: "vertebra arch" EXACT [MA:0001453] synonym: "vertebra dorsal arch" RELATED [MA:0001453] synonym: "vertebra neural arch" EXACT [MA:0001453] xref: AAO:0000725 xref: EFO:0003618 xref: FMA:11946 xref: MA:0001453 xref: OpenCyc:Mx4rwKYHvZwpEbGdrcN5Y29ycA xref: SCTID:317373001 xref: ZFA:0001066 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray82.png/200px-Gray82.png xref: ncithesaurus:Arch_of_the_Vertebra is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! back bone relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0003862 name: foot digit 4 phalanx namespace: uberon def: "A phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 4" EXACT [OBOL:automatic] synonym: "foot digit 4 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 4 long bone of digit" EXACT [OBOL:automatic] synonym: "fourth toe phalanx" EXACT [FMA:32901] synonym: "long bone of digit of foot digit 4" EXACT [OBOL:automatic] synonym: "phalanx of foot digit 4" EXACT [OBOL:automatic] synonym: "phalanx of fourth toe" EXACT [FMA:32901] xref: FMA:32901 xref: MA:0001384 xref: SCTID:361804008 xref: ncithesaurus:Foot_Digit_4_Phalanx is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003863 name: foot digit 5 phalanx namespace: uberon def: "A phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 5" EXACT [OBOL:automatic] synonym: "foot digit 5 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 5 long bone of digit" EXACT [OBOL:automatic] synonym: "little toe phalanx" EXACT [FMA:32902] synonym: "long bone of digit of foot digit 5" EXACT [OBOL:automatic] synonym: "phalanx of fifth digit of foot" EXACT [FMA:32902] synonym: "phalanx of fifth toe" EXACT [FMA:32902] synonym: "phalanx of foot digit 5" EXACT [OBOL:automatic] synonym: "phalanx of little toe" EXACT [FMA:32902] xref: FMA:32902 xref: MA:0001385 xref: SCTID:361806005 xref: ncithesaurus:Foot_Digit_5_Phalanx is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003864 name: middle phalanx of finger namespace: uberon def: "A middle phalanx that is part of a finger [Obol]." [OBOL:automatic] synonym: "hand middle phalanx" EXACT [MA:0001394] synonym: "middle phalanx of hand" EXACT [] xref: FMA:75817 xref: MA:0001394 xref: SCTID:113223004 xref: ncithesaurus:Middle_Phalanx_of_the_Hand is_a: UBERON:0001436 ! phalanx of finger is_a: UBERON:0004301 ! middle phalanx [Term] id: UBERON:0003865 name: distal phalanx of finger namespace: uberon def: "A distal phalanx that is part of a finger [Obol]." [OBOL:automatic] synonym: "distal phalanx of hand" EXACT [] synonym: "hand distal phalanx" EXACT [MA:0001388] synonym: "terminal phalanx of hand" EXACT [UBERON:cjm] synonym: "ungual phalanx of hand" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] xref: FMA:75818 xref: MA:0001388 xref: SCTID:182001007 xref: ncithesaurus:Distal_Phalanx_of_Hand is_a: UBERON:0001436 ! phalanx of finger is_a: UBERON:0004300 ! distal phalanx relationship: part_of UBERON:0009552 ! distal segment of hand digit [Term] id: UBERON:0003866 name: middle phalanx of toe namespace: uberon def: "A middle phalanx that is part of a toe [Obol]." [OBOL:automatic] synonym: "foot middle phalanx" EXACT [MA:0001386] synonym: "middle phalanx of foot" EXACT [] xref: FMA:75829 xref: MA:0001386 xref: SCTID:83207005 is_a: UBERON:0001449 ! phalanx of toe is_a: UBERON:0004301 ! middle phalanx [Term] id: UBERON:0003867 name: distal phalanx of toe namespace: uberon def: "A distal phalanx that is part of a toe [Obol]." [OBOL:automatic] synonym: "distal phalanx of foot" EXACT [] synonym: "foot distal phalanx" EXACT [MA:0001380] synonym: "terminal phalanx of foot" EXACT [UBERON:cjm] synonym: "terminal phalanx of hindlimb" EXACT [UBERON:cjm] synonym: "ungual phalanx of foot" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] synonym: "ungual phalanx of hindlimb" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] xref: FMA:75830 xref: MA:0001380 xref: SCTID:361797001 xref: ncithesaurus:Distal_Phalanx_of_Foot is_a: UBERON:0001449 ! phalanx of toe is_a: UBERON:0004300 ! distal phalanx relationship: part_of UBERON:0009553 ! distal segment of foot digit [Term] id: UBERON:0003868 name: proximal phalanx of toe namespace: uberon def: "A proximal phalanx that is part of a toe [Obol]." [OBOL:automatic] synonym: "foot proximal phalanx" EXACT [MA:0001387] synonym: "proximal phalanx of foot" EXACT [] xref: FMA:75828 xref: MA:0001387 xref: SCTID:85533000 xref: ncithesaurus:Proximal_Phalanx_of_Foot is_a: UBERON:0001449 ! phalanx of toe is_a: UBERON:0004302 ! proximal phalanx [Term] id: UBERON:0003869 name: presumptive ganglion namespace: uberon is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0003874 name: presumptive ventricle namespace: uberon is_obsolete: true [Term] id: UBERON:0003876 name: subdivision of hippocampus namespace: uberon comment: do not include ABA:HIP synonym: "hippocampus region" RELATED [MA:0002428] synonym: "hippocampus subdivision" EXACT [FMA:74041] synonym: "subdivision of hippocampus" EXACT [] xref: FMA:74041 xref: MA:0002428 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0001954 ! Ammon's horn [Term] id: UBERON:0003881 name: CA1 field of hippocampus namespace: uberon synonym: "CA1" EXACT [] synonym: "CA1 field" EXACT [] synonym: "CA1 field of Ammon's horn" EXACT [] synonym: "CA1 field of cornu ammonis" EXACT [] synonym: "CA1 field of hippocampus" EXACT [] synonym: "cornu ammonis 1" EXACT [NIF_GrossAnatomy:birnlex_1197] synonym: "hippocampus CA1" EXACT [] synonym: "prosubiculum = distal ca1" EXACT [NIF_GrossAnatomy:birnlex_1197] synonym: "regio i cornus ammonis" EXACT [FMA:74042, FMA:TA] synonym: "regio i hippocampi proprii" EXACT [FMA:74042, FMA:TA] synonym: "regio superior" EXACT [NIF_GrossAnatomy:birnlex_1197] synonym: "regio superior of the hippocampus" EXACT [FMA:74042] synonym: "region 1 of Ammon's horn" EXACT [] synonym: "region i of ammon's horn" EXACT [FMA:74042] synonym: "region i of hippocampus proper" EXACT [FMA:74042] xref: ABA:CA1 xref: EFO:0002454 xref: FMA:74042 xref: MA:0000950 xref: NIF_GrossAnatomy:birnlex_1197 xref: ncithesaurus:CA1_Field_of_the_Cornu_Ammonis is_a: UBERON:0003876 ! subdivision of hippocampus property_value: "spatially_disjoint_from" UBERON:0003882 property_value: "spatially_disjoint_from" UBERON:0003883 [Term] id: UBERON:0003882 name: CA2 field of hippocampus namespace: uberon synonym: "CA2" EXACT [] synonym: "CA2 field" EXACT [] synonym: "CA2 field of Ammon's horn" EXACT [] synonym: "CA2 field of cornu ammonis" EXACT [] synonym: "CA2 field of hippocampus" EXACT [] synonym: "hippocampus CA2" EXACT [] synonym: "regio ii cornus ammonis" EXACT [FMA:74044, FMA:TA] synonym: "regio ii hippocampi proprii" EXACT [FMA:74044, FMA:TA] synonym: "region 2 of Ammon's horn" EXACT [] synonym: "region ii of ammon's horn" EXACT [FMA:74044] synonym: "region ii of hippocampus proper" EXACT [FMA:74044] xref: ABA:CA2 xref: EFO:0002455 xref: FMA:74044 xref: MA:0000951 xref: NIF_GrossAnatomy:birnlex_1362 xref: ncithesaurus:CA2_Field_of_the_Cornu_Ammonis is_a: UBERON:0003876 ! subdivision of hippocampus property_value: "spatially_disjoint_from" UBERON:0003881 property_value: "spatially_disjoint_from" UBERON:0003883 [Term] id: UBERON:0003883 name: CA3 field of hippocampus namespace: uberon def: "Region III of hippocampus proper is a portion of the hippocampal formation. Region CA3 receives input along the mossy fibers from granule cells in the dentate gyrus (DG) and from projection cells in entorhinal cortex along the perforant path. The mossy fiber pathway terminates in stratum lucidum while the perforant path passes through stratum lacunosum and terminates in stratum moleculare. The inputs from the medial septum and diagonal band of Broca terminate in stratum radiatum, along with commisural connections from the contralateral hippocampus. The pyramidal cells in CA3 (of which there are approximately 200,000 in each hemisphere in the rat) send some axons back to the hilus, but the majority project to regions CA2 and CA1 (a pathway called the Schaffer collaterals), in addition to a significant number of connections that terminate within CA3 (called recurrent connections). Both the recurrent connections and the Schaffer collaterals terminate preferentially in the septal or dorsal direction from the originating cells. CA3 also sends a small set of output fibers to the lateral septum. The region is conventionally divided into 3 divisions. CA3a is the part of the cell band which is most distal from the dentate (and closest to CA1). CA3b is the middle part of the band nearest to the fimbria/fornix connection. CA3c is the most proximal to the dentate, inserting into the hilus. The region overall has been considered to be the 'pacemaker' of the hippocampus. In CA3 much of the synchronous bursing activity associated with interictal epileptiform activity appears to be generated. The excitatory collateral interconnectivity appears to be the property of CA3 most responsible for this. CA3, unlike other regions, has pyramidal cell axon collaterals ramifying extensively with local region and making excitatory contacts with neighbors. CA3 has been implicated in a number of working theories on memory and learning hippocampal processes. Oscillatory rhythms (10-30Hz) are cholinergically driven patterns that depend on coupling of interneurons and pyramidal cell axons via gap junctions as well as glutaminergic (excitatory) and GABAergic (inhibitory) synapses. Sharp EEG waves seen here are also implicated in memory consolidation." [Wikipedia:Region_III_of_hippocampus_proper] synonym: "CA3" EXACT [] synonym: "CA3 field" EXACT [] synonym: "CA3 field of Ammon's horn" EXACT [] synonym: "CA3 field of cornu ammonis" EXACT [] synonym: "CA3 field of hippocampus" EXACT [] synonym: "hippocampus CA3" EXACT [] synonym: "regio iii cornus ammonis" EXACT [FMA:74045, FMA:TA] synonym: "regio iii hippocampi proprii" EXACT [FMA:74045, FMA:TA] synonym: "regio inferior" EXACT [NIF_GrossAnatomy:birnlex_1204] synonym: "region 3 of Ammon's horn" EXACT [] synonym: "region iii of ammon's horn" EXACT [FMA:74045] synonym: "region iii of hippocampus proper" EXACT [FMA:74045] xref: ABA:CA3 xref: EFO:0002456 xref: FMA:74045 xref: MA:0000952 xref: NIF_GrossAnatomy:birnlex_1204 xref: ncithesaurus:CA3_Field_of_the_Cornu_Ammonis is_a: UBERON:0003876 ! subdivision of hippocampus property_value: "spatially_disjoint_from" UBERON:0003881 property_value: "spatially_disjoint_from" UBERON:0003882 [Term] id: UBERON:0003884 name: CA4 field of hippocampus namespace: uberon comment: consider obsoleting. consider: CA3c, hilus synonym: "CA4" EXACT [] synonym: "CA4 field" EXACT [] synonym: "CA4 field of Ammon's horn" EXACT [] synonym: "CA4 field of cornu ammonis" EXACT [] synonym: "hippocampus CA4" EXACT [] synonym: "regio iv cornus ammonis" EXACT [FMA:75741, FMA:TA] synonym: "regio iv hippocampi proprii" EXACT [FMA:75741, FMA:TA] synonym: "region 4 of Ammon's horn" EXACT [] synonym: "region iv of ammon's horn" EXACT [FMA:75741] synonym: "region iv of hippocampus proper" EXACT [FMA:75741] xref: EFO:0002457 xref: FMA:75741 xref: MA:0000953 xref: ncithesaurus:CA4_Field_of_the_Cornu_Ammonis is_a: UBERON:0003876 ! subdivision of hippocampus [Term] id: UBERON:0003885 name: mesometrium namespace: uberon def: "A mesentery that is part of a uterus [Obol]." [OBOL:automatic] synonym: "mesentery of uterus" RELATED [FMA:19816, MA:0002931, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] xref: FMA:19816 xref: MA:0002931 xref: SCTID:250172001 is_a: UBERON:0001297 ! serosa of uterus is_a: UBERON:0002095 ! mesentery relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0003886 name: body cavity precursor namespace: uberon is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0003887 name: intraembryonic coelom namespace: uberon def: "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom] comment: TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. Todo: check ZFA, which appears to be a structure present in adults synonym: "somatic coelom" EXACT [Wikipedia:Intraembryonic_coelom] xref: EHDAA:251 xref: EMAPA:16088 xref: VHOG:0000316 xref: ncithesaurus:Intraembryonic_Coelom is_a: UBERON:0003886 ! body cavity precursor [Term] id: UBERON:0003888 name: extraembryonic coelom namespace: uberon def: "cavity between Heuser's membrane and the Trophoblast[WP]." [Wikipedia:Extraembryonic_coelom] synonym: "chorion cavity" EXACT [EHDAA2:0000246] synonym: "chorionic cavity" EXACT [EHDAA2:0000246] synonym: "exocoelomic cavity " RELATED [VHOG:0001671] synonym: "extraembryonic celom" EXACT [FMA:63943] synonym: "extraembryonic coelomic cavity" RELATED [VHOG:0001671] xref: EHDAA2:0000246 xref: EHDAA:146 xref: EMAPA:16081 xref: FMA:63943 xref: SCTID:362843009 xref: VHOG:0001671 xref: ncithesaurus:Extraembryonic_Coelom is_a: UBERON:0003886 ! body cavity precursor [Term] id: UBERON:0003889 name: fallopian tube namespace: uberon def: "Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens." [Wikipedia:Fallopian_tube] comment: http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "fallopian tubes" RELATED [] synonym: "mammalian oviduct" EXACT [http://sourceforge.net/tracker/?func=detail&aid=3293337&group_id=36855&atid=440764] synonym: "uterine tube" RELATED [] xref: EFO:0000974 xref: EV:0100112 xref: FMA:18245 xref: GAID:365 xref: MA:0000385 xref: MESH:A.05.360.319.114.373 xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA xref: SCTID:181463001 xref: galen:FallopianTube xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png xref: ncithesaurus:Fallopian_Tube is_a: UBERON:0000993 ! oviduct relationship: part_of UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003890 name: Mullerian duct namespace: uberon alt_id: UBERON:0005318 def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]." [GO:0061205, Wikipedia:Mullerian_duct, http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] comment: Development notes: Sertoli cells secrete anti-Mullerian hormone (AMH) inducing the demise of this duct synonym: "MC' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve." [Wikipedia:Maxillary_prominence] synonym: "maxillary process" EXACT [EHDAA2:0001070] synonym: "maxillary process of embryo" EXACT [SCTID:346355001] xref: EHDAA2:0001070 xref: EHDAA:5877 xref: EMAPA:17359 xref: SCTID:346355001 xref: ncithesaurus:Maxillary_Prominence is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0000922 ! embryo disjoint_from: UBERON:0005869 ! maxillary process of inferior nasal concha [Term] id: UBERON:0005869 name: maxillary process of inferior nasal concha namespace: uberon def: "From the lower border of the inferior nasal concha, a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Maxillary_process_of_inferior_nasal_concha] synonym: "maxillary process of inferior concha" EXACT [FMA:54741] synonym: "maxillary process of inferior nasal turbinate" EXACT [FMA:54741] synonym: "maxillary process of inferior turbinate" EXACT [FMA:54741] synonym: "processus maxillaris (concha nasalis inferior)" EXACT [FMA:54741] synonym: "processus maxillaris conchae nasalis inferioris" EXACT [FMA:54741, FMA:TA] xref: FMA:54741 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] id: UBERON:0005870 name: olfactory pit namespace: uberon def: "By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[WP]. an indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, Wikipedia:Olfactory_pit] comment: we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode synonym: "nasal pit" EXACT [XAO:0000275] xref: AAO:0011068 xref: EFO:0003496 xref: EHDAA2:0001295 xref: EHDAA:4772 xref: EMAPA:16800 xref: SCTID:361485001 xref: XAO:0000275 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005871 name: palatine process of maxilla namespace: uberon def: "The palatine process of the maxilla (palatal process), thick and strong, is horizontal and projects medialward from the nasal surface of the bone. It forms a considerable part of the floor of the nose and the roof of the mouth and is much thicker in front than behind. Its inferior surface is concave, rough and uneven, and forms, with the palatine process of the opposite bone, the anterior three-fourths of the hard palate. It is perforated by numerous foramina for the passage of the nutrient vessels; is channelled at the back part of its lateral border by a groove, sometimes a canal, for the transmission of the descending palatine vessels and the anterior palatine nerve from the spheno-palatine ganglion; and presents little depressions for the lodgement of the palatine glands. When the two maxillae are articulated, a funnel-shaped opening, the incisive foramen, is seen in the middle line, immediately behind the incisor teeth. In this opening the orifices of two lateral canals are visible; they are named the incisive canals or foramina of Stenson; through each of them passes the terminal branch of the descending palatine artery and the nasopalatine nerve. Occasionally two additional canals are present in the middle line; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. On the under surface of the palatine process, a delicate linear suture, well seen in young skulls, may sometimes be noticed extending lateralward and forward on either side from the incisive foramen to the interval between the lateral incisor and the canine tooth. The small part in front of this suture constitutes the premaxilla (os incisivum), which in most vertebrates forms an independent bone; it includes the whole thickness of the alveolus, the corresponding part of the floor of the nose and the anterior nasal spine, and contains the sockets of the incisor teeth. The upper surface of the palatine process is concave from side to side, smooth, and forms the greater part of the floor of the nasal cavity. It presents, close to its medial margin, the upper orifice of the incisive canal. The lateral border of the process is incorporated with the rest of the bone. The medial border is thicker in front than behind, and is raised above into a ridge, the nasal crest, which, with the corresponding ridge of the opposite bone, forms a groove for the reception of the vomer. The front part of this ridge rises to a considerable height, and is named the incisor crest; it is prolonged forward into a sharp process, which forms, together with a similar process of the opposite bone, the anterior nasal spine. The posterior border is serrated for articulation with the horizontal part of the palatine bone." [Wikipedia:Palatine_process_of_maxilla] synonym: "palatal process" EXACT [Wikipedia:Palatine_process_of_maxilla] synonym: "palatine process" EXACT [Wikipedia:Palatine_process_of_maxilla] synonym: "processus palatinus (maxilla)" EXACT [FMA:52896] xref: FMA:52896 xref: SCTID:368870009 is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0005872 name: 1st arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 1st and 2nd pharyngeal arch." [VHOG:OG] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "1st arch branchial groove" EXACT [EHDAA2:0000008] synonym: "1st arch groove ectoderm" EXACT [EHDAA2:0000009] synonym: "branchial groove of 1st arch" EXACT [EMAPA:16119] xref: EHDAA2:0000009 xref: EHDAA:575 xref: EMAPA:16119 xref: VHOG:0000969 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0005873 name: 2nd arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 2nd and 3rd pharyngeal arch." [VHOG:OG] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "2nd arch branchial groove" EXACT [EHDAA2:0000054] synonym: "2nd arch groove ectoderm" EXACT [EHDAA2:0000057] synonym: "branchial groove of 2nd arch" EXACT [EMAPA:16396] xref: EHDAA2:0000057 xref: EHDAA:613 xref: EMAPA:16396 xref: VHOG:0000972 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0005874 name: 3rd arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 3rd and 4th pharyngeal arch." [VHOG:OG] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "3rd arch branchial groove" EXACT [EHDAA2:0000071] synonym: "3rd arch groove ectoderm" EXACT [EHDAA2:0000074] synonym: "branchial groove of 3rd arch" EXACT [EMAPA:16581] xref: EHDAA2:0000074 xref: EHDAA:1082 xref: EMAPA:16581 xref: VHOG:0000973 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0005875 name: 4th arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 4th and 5th pharyngeal arch." [VHOG:OG] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "4th arch branchial groove" EXACT [RETIRED_EHDAA2:0000088] synonym: "branchial groove of 4th arch" EXACT [EMAPA:16761] xref: EHDAA:1665 xref: EMAPA:16761 xref: RETIRED_EHDAA2:0000088 xref: VHOG:0000968 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0005876 name: genital tubercle namespace: uberon def: "A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]." [Wikipedia:Genital_tubercle] comment: Taxon notes: todo - add taxon constraints xref: EHDAA2:0000705 xref: EHDAA:5925 xref: EMAPA:17382 xref: SCTID:308798005 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0005879 name: pharyngeal cleft namespace: uberon def: "the counterpart of a branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]." [Wikipedia:Pharyngeal_groove] comment: Editor notes: consider adding location (precursor) - i.e. external (ectodermal). Note we use overlaps as the relationship to the arches synonym: "branchial cleft" RELATED [Wikipedia:Pharyngeal_groove] synonym: "branchial groove" RELATED [AAO:0010623, Wikipedia:Pharyngeal_groove] synonym: "pharyngeal groove" EXACT [Wikipedia:Pharyngeal_groove] xref: AAO:0010623 xref: ncithesaurus:Pharyngeal_Groove is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0006846 ! groove relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005880 name: prepollex namespace: uberon def: "a rudimentary additional digit on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]. A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. Two or more elements located ventral and medial to the metacarpal of digit II(I). The proximal prepollex is small and round whereas distal prepollex 1 is usually large and wedge-shaped. When more elements are present, they are smaller than previous elements." [AAO:0000852, AAO:Fabrezi_and_Alberch_1996, AAO:Maglia_et_al_2007] comment: not homologous to digit 1 of tetrapods. TODO: add articulation relations synonym: "cartilago pre-pollicis" RELATED [AAO:0000852] synonym: "pseudothumb" RELATED [doi:10.1098/rsbl.2009.1038] xref: AAO:0000852 is_a: UBERON:0005881 ! limb outgrowth [Term] id: UBERON:0005881 name: limb outgrowth namespace: uberon comment: encompasses digits and prepollex is_a: UBERON:0002529 ! limb segment [Term] id: UBERON:0005882 name: alar plate namespace: uberon def: "the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord." [MP:0009692, Wikipedia:Alar_plate] synonym: "alar lamina" RELATED [Wikipedia:Alar_lamina] synonym: "spinal cord alar column" EXACT [MP:0009692] synonym: "spinal cord alar lamina" EXACT [MP:0009692] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005883 name: neural tube lateral wall mantle layer namespace: uberon comment: TODO - expand subtypes post EHDAA2-revision, check lateral wall xref: EHDAA2:0001261 is_a: UBERON:0004061 ! neural tube mantle layer relationship: part_of UBERON:0005496 ! neural tube lateral wall [Term] id: UBERON:0005884 name: hyoid arch skeleton namespace: uberon synonym: "pharyngeal arch 2 skeleton" EXACT [ZFA:0001276] xref: AAO:0010370 xref: XAO:0003177 xref: ZFA:0001276 is_a: UBERON:0008895 ! pharyngeal arch skeleton relationship: part_of UBERON:0001704 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! viscerocranium relationship: part_of UBERON:0001704 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! viscerocranium [Term] id: UBERON:0005886 name: pharyngeal arch 3-7 skeleton namespace: uberon synonym: "branchial arch skeleton" RELATED SENSU [XAO:0003180] xref: XAO:0003180 xref: ZFA:0000095 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0008895 ! pharyngeal arch skeleton relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0008896 ! pharyngeal arch 3-7 [Term] id: UBERON:0005889 name: zygote cortex namespace: uberon comment: todo - request from GO synonym: "cortex" RELATED [XAO:0000216] xref: AAO:0010327 xref: EMAPA:18427 xref: XAO:0000216 is_a: UBERON:0000470 ! cell part relationship: part_of CL:0000365 ! zygote [Term] id: UBERON:0005890 name: gonad germinal epithelium namespace: uberon synonym: "coelomic epithelium" RELATED [EMAPA:17384] synonym: "germinal epithelium" EXACT [RETIRED_EHDAA2:0000706] xref: BTO:0004524 xref: EMAPA:17384 xref: EV:0200046 xref: RETIRED_EHDAA2:0000706 xref: VHOG:0000629 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004909 ! epithelium of gonad relationship: part_of UBERON:0000991 ! gonad relationship: part_of UBERON:0005891 ! coelomic epithelium [Term] id: UBERON:0005891 name: coelomic epithelium namespace: uberon def: "The epithelial lining of the surface of the body wall and abdominal organs." [Wikipedia:Coelomic_epithelium, XAO:0000329] xref: EHDAA2:0004049 xref: XAO:0000329 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0005892 name: mesonephric early distal tubule namespace: uberon def: "The mesonephric equivalent of the ascending limb, or straight distal segment, of metanephric nephrons." [XB:curator] synonym: "mesonephric ascending limb" RELATED [XAO:0000333] synonym: "mesonephric straight distal segment" RELATED [XAO:0000333] xref: AAO:0010391 xref: XAO:0000333 is_a: UBERON:0000083 ! mesonephric tubule [Term] id: UBERON:0005893 name: leg bone namespace: uberon xref: MA:0000670 xref: MESH:A.02.835.232.500 is_a: UBERON:0003464 ! hindlimb bone relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0005894 name: locomotive weight-bearing appendage namespace: uberon def: "A leg is a limb on which an animal walks and stands (GO:0035110)." [GO:0035110, Wikipedia:Leg] comment: Functional grouping, currently encompasses vertebrate and insect legs subset: functional_classification ! functional_classification synonym: "leg" RELATED [] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0005895 name: insect leg namespace: uberon def: "The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]." [FBbt:00004640, GO:0007480] synonym: "imaginal disc-derived leg" EXACT [GO:0007480] xref: FBbt:00004640 xref: MAT:0000095 xref: MIAA:0000095 xref: TGMA:0000164 is_a: UBERON:0005894 ! locomotive weight-bearing appendage relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0005896 name: jointed/prehensile appendage namespace: uberon def: "A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]." [GO:0035108, Wikipedia:Limb_(anatomy)] synonym: "Extremitaet" RELATED [BTO:0001492] synonym: "extremity" RELATED [] synonym: "limb" RELATED [AEO:0000172, BTO:0001492, GO:0035108] xref: AEO:0000172 xref: BTO:0001492 xref: MESH:A.01.378 xref: ncithesaurus:Extremities is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0005897 name: hand bone namespace: uberon xref: MA:0000619 xref: SCTID:265809008 is_a: UBERON:0008962 ! forelimb bone [Term] id: UBERON:0005899 name: foot bone namespace: uberon xref: GAID:192 xref: MA:0000643 xref: MESH:A.02.835.232.300 xref: SCTID:361371005 is_a: UBERON:0003464 ! hindlimb bone [Term] id: UBERON:0005902 name: occipital region namespace: uberon def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyles." [TAO:0001414] comment: TODO - check synonym: "basicranial region" EXACT [ZFA:0001414] xref: AAO:0010199 xref: SCTID:362618001 xref: TAO:0001414 xref: XAO:0003173 xref: ZFA:0001414 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0005903 name: duct of seminal vesicle namespace: uberon def: "Each seminal vesicle consists of a single tube, coiled upon itself, and giving off several irregular cecal diverticula; the separate coils, as well as the diverticula, are connected together by fibrous tissue. When uncoiled, the tube is about the diameter of a quill, and varies in length from 10 to 15 cm.; it ends posteriorly in a cul-de-sac; its anterior extremity becomes constricted into a narrow straight duct called the excretory duct of seminal gland (or duct of the seminal vesicle), which joins with the corresponding ductus deferens to form the ejaculatory duct[WP]." [Wikipedia:Excretory_duct_of_seminal_gland] synonym: "ductus excretorius (vesicula seminalis)" EXACT [FMA:19473] synonym: "ductus excretorius glandulae vesiculosae" EXACT [FMA:19473, FMA:TA] synonym: "excretory duct of seminal gland" EXACT [FMA:19473] synonym: "seminal vesicle duct" EXACT [FMA:19473] xref: EMAPA:29282 xref: FMA:19473 xref: SCTID:279675008 is_a: UBERON:0005904 ! duct of male reproductive system [Term] id: UBERON:0005904 name: duct of male reproductive system namespace: uberon comment: groups the individual ducts in a variety of species subset: grouping_class ! Subset consisting of classes creating for grouping purposes is_a: UBERON:0000058 ! duct is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0005905 name: insect labrum namespace: uberon def: "A mouthpart of insects." [Wikipedia:Insect_mouthparts#Labrum] synonym: "insect labium" EXACT [BTO:0004104] synonym: "labium" RELATED [BTO:0004104] synonym: "labrum" RELATED [BTO:0004104] xref: BTO:0004104 xref: FBbt:00004522 xref: HAO:0000456 xref: TADS:0000039 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0005906 name: serous sac namespace: uberon def: "Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA]" [FMA:9689] xref: FMA:9689 xref: SCTID:362890006 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0005908 name: conjunctival sac namespace: uberon def: "Serous sac, which has as parts the conjunctiva and the cavity of conjunctiva. Examples: There are only two conjunctival sacs, the right and the left.[FMA]" [FMA:20291, FMA:FMA] xref: EMAPA:18233 xref: FMA:20291 xref: SCTID:362531001 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005906 ! serous sac relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0005910 name: transitional epithelium namespace: uberon def: "Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium] comment: see comments for urothelium synonym: "epithelium transitionale" EXACT [FMA:63914] synonym: "urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium] xref: BTO:0003906 xref: FMA:63914 xref: MESH:A.10.272.850 xref: SCTID:30117005 xref: ncithesaurus:Transitional_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0005911 name: endo-epithelium namespace: uberon def: "Epithelium that derives from the endoderm. Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland.[FMA]" [FMA:69065, FMA:FMA] xref: FMA:69065 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0005912 name: transitional epithelium of major calyx namespace: uberon synonym: "urothelium of major calyx" EXACT [OBOL:automatic] xref: FMA:263266 is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0004788 ! kidney pelvis urothelium [Term] id: UBERON:0005913 name: zone of bone organ namespace: uberon synonym: "bone organ zone" EXACT [FMA:10483] xref: FMA:10483 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0005919 name: supreme nasal concha namespace: uberon def: "a thin bony plate occasionally found projecting from the inner wall of the ethmoid labyrinth, above the bony superior nasal concha, and the mucous membrane covering the plate." [http://medical-dictionary.thefreedictionary.com/supreme+nasal+concha] synonym: "concha nasi suprema" EXACT [FMA:57457, FMA:TA] synonym: "highest nasal concha" EXACT [FMA:57457] synonym: "supreme nasal turbinate" EXACT [FMA:57457] synonym: "supreme turbinate" EXACT [FMA:57457] xref: FMA:57457 xref: SCTID:361935003 is_a: UBERON:0003973 ! nasal concha of ethmoid bone [Term] id: UBERON:0005920 name: superior nasal concha namespace: uberon def: "The back part of the medial surface of the labyrinth of ethmoid is subdivided by a narrow oblique fissure, the superior meatus of the nose, bounded above by a thin, curved plate, the superior nasal concha. The bone found in superior nasal concha is part of the ethmoid bone." [Wikipedia:Superior_nasal_concha] synonym: "superior concha" RELATED [Wikipedia:Superior_nasal_concha] synonym: "superior nasal turbinate" EXACT [FMA:57458] synonym: "superior turbinate" EXACT [FMA:57458] xref: FMA:57458 xref: SCTID:361934004 is_a: UBERON:0003973 ! nasal concha of ethmoid bone [Term] id: UBERON:0005921 name: middle nasal concha namespace: uberon def: "The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha." [Wikipedia:Middle_nasal_concha] synonym: "middle concha" RELATED [Wikipedia:Middle_nasal_concha] synonym: "middle nasal turbinate" EXACT [FMA:57459] synonym: "middle turbinate" EXACT [FMA:57459] xref: FMA:57459 xref: SCTID:361933005 is_a: UBERON:0003973 ! nasal concha of ethmoid bone [Term] id: UBERON:0005922 name: inferior nasal concha namespace: uberon def: "The inferior nasal concha (Inferior Turbinated Bone) is one of the turbinates in the nose. It extends horizontally along the lateral wall of the nasal cavity [Fig. 1] and consists of a of spongy bone, curled upon itself like a scroll. Each inferior nasal concha is considered a facial pair of bones since they arise from the maxillae bones and projects horizontally into the nasal cavity. They are also termed 'inferior nasal turbinates' because they function similar to that of a turbine. As the air passes through the turbinates, the air is churned against these mucosa-lined bones in order to receive warmth, moisture and cleansing. Superior to inferior nasal concha are the middle nasal concha and superior nasal concha which arise from the cranial portion of the skull. Hence, these two are considered as a part of the cranial bones. It has two surfaces, two borders, and two extremities." [Wikipedia:Inferior_nasal_concha] comment: note that in FMA this is not classified with the other turbinates. In Uberon we subdivide the turbinates into the ethmoturbinates and the inferior turbinate. TODO: check ethmoidal process of inferior nasal concha synonym: "inferior concha" RELATED [Wikipedia:Inferior_nasal_concha] synonym: "inferior nasal turbinate" EXACT [FMA:54736] synonym: "inferior turbinate" EXACT [FMA:54736] synonym: "inferior turbinated" RELATED [Wikipedia:Inferior_nasal_concha] xref: FMA:54736 xref: SCTID:361932000 xref: ncithesaurus:Inferior_Turbinate is_a: UBERON:0001762 ! nasal concha is_a: UBERON:0003462 ! viscerocranium bone is_a: UBERON:0008001 ! irregular bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0005925 name: ethmoidal process of inferior nasal concha namespace: uberon def: "Behind the lacrimal process of the inferior nasal conchae lies a broad, thin plate, the ethmoidal process, which ascends to join the uncinate process of the ethmoid; from its lower border a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Ethmoidal_process_of_inferior_nasal_concha] synonym: "ethmoidal process of inferior concha" EXACT [FMA:54742] synonym: "ethmoidal process of inferior nasal turbinate" EXACT [FMA:54742] synonym: "ethmoidal process of inferior turbinate" EXACT [FMA:54742] synonym: "processus ethmoidalis (concha nasalis inferior)" EXACT [FMA:54742] synonym: "processus ethmoidalis conchae nasalis inferioris" EXACT [FMA:54742, FMA:TA] xref: FMA:54742 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] id: UBERON:0005928 name: external naris namespace: uberon def: "Surface structure that provides one of the small external openings of the head that give passage to air for breathing." [OMD:nostril, Wikipedia:Nostril] comment: Fish have two pairs of external nostrils. There is a case for classifying ZFA:0001427 here as well as anterior naris. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior naris" EXACT [ZFA:0001427] synonym: "blowhole" NARROW [Wikipedia:Blowhole_(anatomy)] synonym: "external nares" EXACT PLURAL [] synonym: "nostril" EXACT [FMA:59645, XAO:0003033] xref: AAO:0000024 xref: AAO:0010358 xref: EHDAA2:0001275 xref: EHDAA:9085 xref: EMAPA:17848 xref: FMA:59645 xref: MA:0001320 xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA xref: SCTID:276165005 xref: TAO:0001427 xref: VHOG:0000544 xref: XAO:0003033 xref: ZFA:0001427 xref: ncithesaurus:Nostril is_a: UBERON:0000003 ! naris is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0005931 name: primary choana namespace: uberon def: "initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate." [http://www.drugs.com/dict/primary-choana.html] comment: TODO - check. MA says part_of external naris. xref: EHDAA:9087 xref: EMAPA:17851 xref: MA:0001322 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005928 ! external naris [Term] id: UBERON:0005932 name: bulb of hair follicle namespace: uberon comment: see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 synonym: "coat hair bulb" NARROW SENSU [MA:0000161] synonym: "hair bulb" EXACT [FMA:70666] synonym: "hair follicle bulb" EXACT [FMA:70666] xref: EMAPA:18770 xref: FMA:70666 xref: MA:0000161 xref: MA:0000783 xref: SCTID:361360009 xref: ncithesaurus:Hair_Bulb is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002073 ! hair follicle relationship: part_of UBERON:0006378 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! vibrissa [Term] id: UBERON:0005933 name: hair root sheath namespace: uberon comment: see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 xref: EMAPA:18772 xref: MA:0000162 xref: MA:0000784 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005932 ! bulb of hair follicle [Term] id: UBERON:0005941 name: hair inner root sheath namespace: uberon def: "The cells of the inner root sheath are interlocked with those of the cuticle of the hair, firmly anchoring the hair in the follicle. The inner root sheath must grow at the same rate as the hair, or faster as it molds and guides the shaft in its passage outward[BTO]. the multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer and the inner root sheath cuticle[MP]." [Keratin.com:http://www.keratin.com/, MP:0010685, https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376] synonym: "hair follicle inner root sheath" EXACT [MP:0010685] synonym: "inner root sheath" RELATED [BTO:0003971] synonym: "inner root sheath of hair follicle" EXACT [FMA:70935] synonym: "inner sheath of hair follicle" EXACT [FMA:70935] synonym: "internal root sheath of hair follicle" EXACT [FMA:70935] xref: BTO:0003971 xref: FMA:70935 xref: MA:0000779 xref: MA:0000785 is_a: UBERON:0005933 ! hair root sheath [Term] id: UBERON:0005942 name: hair outer root sheath namespace: uberon def: "It surrounds the hair follicle like a sleeve all the way to the bulb. The outer root sheath is essentially a stratified epithelium that is contiguous with the epidermis." [Keratin.com:http://www.keratin.com/, https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376] synonym: "ORS" RELATED [BTO:0003969] synonym: "external root sheath of hair follicle" EXACT [FMA:70943] synonym: "hair follicle outer root sheath" EXACT [BTO:0003969] synonym: "outer root sheath" RELATED [BTO:0003969] synonym: "outer root sheath of hair follicle" EXACT [FMA:70943] xref: BTO:0003969 xref: FMA:70943 xref: MA:0000780 xref: MA:0000786 is_a: UBERON:0005933 ! hair root sheath [Term] id: UBERON:0005943 name: hair root sheath matrix namespace: uberon xref: MA:0000781 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005933 ! hair root sheath [Term] id: UBERON:0005944 name: axial skeleton namespace: uberon def: "Subdivision of skeleton which consists of skull, set of all vertebrae, set of all ribs and sternum[FMA]." [FMA:71221, Wikipedia:Axial_skeleton] comment: note that in versions of FMA prior to v3, axial skeleton did _not_ include the skull subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000963 xref: EMAPA:17214 xref: EMAPA:18043 xref: FMA:71221 xref: MA:0000308 xref: SCTID:361725000 xref: VAO:0000056 xref: XAO:0004011 xref: ncithesaurus:Axial_Skeleton is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0004288 ! skeleton [Term] id: UBERON:0005945 name: neurocranial trabecula namespace: uberon synonym: "neurocranial trabeculae" EXACT PLURAL [ZFA:0001321] synonym: "trabecula" BROAD SENSU [ZFA:0001321] synonym: "trabecular cartilage" BROAD [ZFA:0001321] xref: EFO:0003677 xref: ZFA:0001321 is_a: UBERON:0000440 ! trabecula is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0003112 ! olfactory region [Term] id: UBERON:0005946 name: outflow tract of atrium namespace: uberon synonym: "outflow part of atrium" EXACT [FMA:14141] xref: FMA:14141 is_a: UBERON:0004145 ! outflow tract [Term] id: UBERON:0005953 name: outflow part of right ventricle namespace: uberon def: "Outflow part of ventricle which is continuous with the pulmonary trunk[FNA]. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery[WP]." [FMA:7216] synonym: "RVOT" EXACT [] synonym: "conus arteriosus (infundibulum)" EXACT [FMA:7216] synonym: "infundibulum" BROAD [Wikipedia:Conus_arteriosus] synonym: "infundibulum of right ventricle" EXACT [FMA:7216] synonym: "outflow tract of right ventricle" EXACT [FMA:7216] synonym: "pulmonary conus" EXACT [FMA:7216] xref: FMA:7216 xref: SCTID:244379003 is_a: UBERON:0005337 ! outflow tract of ventricle [Term] id: UBERON:0005956 name: outflow part of left ventricle namespace: uberon def: "Outflow part of ventricle which is continuous with the aorta[FMA]. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]." [FMA:9473] synonym: "LVOT" EXACT [] synonym: "aortic vestibule" EXACT [FMA:9473] synonym: "left ventricular outflow" EXACT [FMA:9473] synonym: "outflow tract of left ventricle" EXACT [FMA:9473] synonym: "vestibulum aortae" EXACT [FMA:9473, FMA:TA] xref: FMA:9473 xref: SCTID:264070001 is_a: UBERON:0005337 ! outflow tract of ventricle [Term] id: UBERON:0005965 name: outflow part of right atrium namespace: uberon def: "Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve.[FMA]" [FMA:9550, FMA:FMA] synonym: "main part of right atrium" EXACT [FMA:9550] synonym: "outflow tract of right atrium" EXACT [FMA:9550] xref: FMA:9550 is_a: UBERON:0005946 ! outflow tract of atrium [Term] id: UBERON:0005966 name: outflow part of left atrium namespace: uberon synonym: "main part of left atrium" EXACT [FMA:9551] synonym: "outflow tract of left atrium" EXACT [FMA:9551] xref: FMA:9551 is_a: UBERON:0005946 ! outflow tract of atrium [Term] id: UBERON:0005967 name: conotruncal ridge namespace: uberon def: "One of the pair of spiral mesenchymal swellings in the primordial ventricular outflow tract, that eventually fuse to form the conotruncal septum, dividing the subvalvular outflow tract and contributing to the membranous interventricular septum[MP]" [MP:0010585, PMID:8823298] synonym: "aortico-pulmonary spiral ridges" EXACT [MP:0010585] synonym: "bulbar ridge" EXACT [MP:0010585] synonym: "conotruncal cushion" EXACT [MP:0010585] synonym: "endocardial ridge" EXACT [MP:0010585] synonym: "outflow tract cushion" EXACT [MP:0010585] synonym: "outflow tract endocardial cushion" EXACT [MP:0010585] xref: EHDAA:1914 xref: EMAPA:17332 xref: EMAPA:17867 xref: RETIRED_EHDAA2:0000194 xref: VHOG:0001385 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0009751 ! cardiac mesenchyme relationship: part_of UBERON:0004706 ! bulbus cordis relationship: part_of UBERON:0005337 ! outflow tract of ventricle [Term] id: UBERON:0005968 name: infundibulum of hair follicle namespace: uberon synonym: "dermal piliary canal" EXACT [FMA:70722] synonym: "hair follicle infundibulum" EXACT [FMA:70722] xref: FMA:70722 xref: SCTID:319522000 xref: ncithesaurus:Hair_Follicle_Infundibulum is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0005969 name: reticulum trabeculare namespace: uberon alt_id: UBERON:0004028 def: "The trabecular meshwork is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). The tissue is spongy and lined by trabeculocytes; it allows fluid to drain into a set of tubes called Schlemm's canal flowing into the blood system[WP]. A porelike structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates to the canal of Schlemm.[GAID] the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates[MP]." [MP:0005203, Wikipedia:Trabecular_meshwork] comment: TODO check syns - ligaments synonym: "Hueck's ligament" RELATED [BTO:0001605] synonym: "cribiform ligament" RELATED [Wikipedia:Trabecular_meshwork] synonym: "iridis" RELATED [Wikipedia:Trabecular_meshwork] synonym: "ligamentum peactin-tum iridis" RELATED [Wikipedia:Trabecular_meshwork] synonym: "ligamentum pectinatum" RELATED [Wikipedia:Trabecular_meshwork] synonym: "ligamentum pectinatum anguli iridocornealis" RELATED [BTO:0001605] synonym: "ligamentum pectinatum iridis" RELATED [Wikipedia:Trabecular_meshwork] synonym: "pectinate ligament" RELATED [BTO:0001605] synonym: "pectinate ligament of iris" RELATED [BTO:0001605] synonym: "scleral trabeculae" RELATED [Wikipedia:Trabecular_meshwork] synonym: "scleral trabecular" RELATED [Wikipedia:Trabecular_meshwork] synonym: "scleral trabecule" RELATED [Wikipedia:Trabecular_meshwork] synonym: "scribiform ligament" RELATED [Wikipedia:Trabecular_meshwork] synonym: "trabecular mesh" RELATED [Wikipedia:Trabecular_meshwork] synonym: "trabecular meshwork" RELATED [BTO:0001605] synonym: "trabecular meshwork of the eye" EXACT [Wikipedia:Trabecular_meshwork] xref: BTO:0001605 xref: EFO:0003077 xref: EV:0100352 xref: GAID:897 xref: MESH:A.09.371.060.932 xref: ncithesaurus:Trabecular_Meshwork is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0003956 ! aqueous drainage system disjoint_from: UBERON:0006205 ! pectineal ligament [Term] id: UBERON:0005970 name: brain commissure namespace: uberon is_a: UBERON:0001020 ! commissure is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0005971 name: amniotic fold namespace: uberon def: "the folded edge of the amnion where it rises over and finally encloses the embryo[TFD]." [http://medical-dictionary.thefreedictionary.com/amniotic+fold] xref: EMAPA:16076 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000305 ! amnion [Term] id: UBERON:0005972 name: tunnel of Corti namespace: uberon def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002227 ! spiral organ of cochlea [Term] id: UBERON:0005973 name: blood-inner ear barrier namespace: uberon def: "the function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier" [MP:0004999] is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0005974 name: posterior cerebellomedullary cistern namespace: uberon def: "A space between the cerebellum and the dorsal surface of the medulla[MP]. The cisterna magna (or cerebellomedullary cistern) is one of three principal openings in the subarachnoid space between the arachnoid and pia mater layers of the meninges surrounding the brain. The openings are collectively referred to as cisterns. The cisterna magna is located between the cerebellum and the dorsal surface of the medulla oblongata. Cerebrospinal fluid produced in the fourth ventricle drains into the cisterna magna via the lateral apertures and median aperture. The two other principal cisterns are the pontine cistern located between the pons and the medulla, and the interpeduncular cistern located between the cerebral peduncles. Cerebral spinal fluid can also be obtained by puncture of the cisterna magna (cistern puncture)." [MP:0009036, Wikipedia:Cisterna_magna] synonym: "cisterna cerebellomedullaris posterior" EXACT [MP:0009033] synonym: "cisterna magna" EXACT [MP:0009033] xref: FMA:83721 xref: GAID:690 xref: MESH:A.08.186.566.166.686.351 xref: SCTID:280391002 xref: ncithesaurus:Cisterna_Magna is_a: UBERON:0004049 ! cerebellomedullary cistern [Term] id: UBERON:0005975 name: hair follicle bulge namespace: uberon def: "the area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells" [MP:0009759] synonym: "bulge of hair follicle" EXACT [FMA:70735] xref: BTO:0004904 xref: FMA:70735 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0005976 name: ansiform lobule crus I namespace: uberon def: "." [MP:0010002] comment: TODO - check synonym: "crus II of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "crus primum lobuli ansiformis cerebelli [h vii a]" EXACT [FMA:72524, FMA:TA] synonym: "first crus of ansiform lobule of cerebellum [h vii a]" EXACT [FMA:72524] synonym: "hemispheric lobule viibi" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "lobulus ansiform crus II" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "lobulus semilunaris inferior" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "lobulus semilunaris superior cerebelli" EXACT [FMA:72524, FMA:TA] synonym: "posterior superior lobule" EXACT [FMA:72524] synonym: "semilunar lobule-2 (superior)" EXACT [FMA:72524] synonym: "superior semilunar lobule" EXACT [FMA:72524] synonym: "superior semilunar lobule " EXACT [FMA:72524] synonym: "superior semilunar lobule of cerebellum" EXACT [FMA:72524] xref: ABA:ANcr1 xref: FMA:72524 xref: NIF_GrossAnatomy:nlx_anat_20081209 is_a: UBERON:0005348 ! ansiform lobule [Term] id: UBERON:0005977 name: ansiform lobule crus II namespace: uberon def: "." [MP:0010003] comment: TODO - check synonym: "crus I of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "crus secundum lobuli ansiformis cerebelli [h vii a" EXACT [FMA:72525, FMA:TA] synonym: "hemispheric lobule viia" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "inferior semilunar lobule" EXACT [FMA:72525] synonym: "inferior semilunar lobule of cerebellum" EXACT [FMA:72525] synonym: "lobulus ansiform crus I" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "lobulus semilunaris inferior cerebelli" EXACT [FMA:72525, FMA:TA] synonym: "lobulus semilunaris superior" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "posterior inferior lobule" EXACT [FMA:72525] synonym: "second crus of ansiform lobule of cerebellum [h vii a]" EXACT [FMA:72525] synonym: "semilunar lobule-2 (inferior)" EXACT [FMA:72525] xref: ABA:ANcr2 xref: FMA:72525 xref: NIF_GrossAnatomy:nlx_anat_20081208 is_a: UBERON:0005348 ! ansiform lobule [Term] id: UBERON:0005978 name: olfactory bulb outer nerve layer namespace: uberon def: "the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia" [MP:0010057] is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: UBERON:0005979 name: crista terminalis namespace: uberon def: "the vertical crest of the interior wall of the right atrium that lies to the right of the sinus of the vena cava and separates this from the remainder of the right atrium" [MP:0010495] synonym: "crista terminalis atrii dextri" EXACT [FMA:9236, FMA:TA] synonym: "crista terminalis cordis" EXACT [FMA:9236] synonym: "crista terminalis of right atrium" EXACT [FMA:9236] xref: FMA:9236 xref: SCTID:277693004 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0005980 name: pectinate muscle namespace: uberon def: "the prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]." [MP:0010496, Wikipedia:Musculi_pectinati] synonym: "musculi pectinati" EXACT PLURAL [Wikipedia:Musculi_pectinati] synonym: "musculus pectinatus" EXACT [FMA:12226] xref: FMA:12226 xref: SCTID:277718001 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002302 ! myocardium of atrium [Term] id: UBERON:0005981 name: vena cava sinus namespace: uberon def: "the portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis" [MP:0010497] synonym: "cavity of inflow part of right atrium" EXACT [FMA:13246] synonym: "posterior right atrial cavity" EXACT [FMA:13246] synonym: "sinus venarum cavarum" EXACT [FMA:13246] xref: FMA:13246 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0005982 name: Bachmann's bundle namespace: uberon def: "the impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium" [MP:0010517, Wikipedia:Bachmann's_bundle] synonym: "anterior interatrial band" EXACT [UBERON:gg] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/05/ConductionsystemoftheheartwithouttheHeart.png/350px-ConductionsystemoftheheartwithouttheHeart.png is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0005983 name: heart layer namespace: uberon def: "the laminar structure of the heart" [MP:0010545] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0005984 name: subendocardium layer namespace: uberon def: "the layer of loose fibrous tissue located between the endocardium and myocardium which contains the nerves and the impulse-conducting system (Purkinje fibers) of the heart" [MP:0010546] is_a: UBERON:0005983 ! heart layer [Term] id: UBERON:0005985 name: coronary vessel namespace: uberon def: "any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation" [MP:0010551] comment: TODO - change relation from part_of xref: MESH:A.07.231.114.269 is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0005986 name: left branch of atrioventricular bundle namespace: uberon def: "Subdivision of conducting system of heart which enters the septal myocardium of left ventricle and is continuous with the anterior, septal and posterior divisions of the left branch of the atrioventricular bundle[FMA]. the left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]." [FMA:9487, MP:0010566] synonym: "crus sinistrum (fasciculi atrioventricularis)" EXACT [FMA:9487] synonym: "left bundle branch" EXACT [FMA:9487] synonym: "left posterior branch" EXACT [MP:0010566] xref: FMA:9487 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0005987 name: right branch of atrioventricular bundle namespace: uberon def: "Subdivision of conducting system of heart which enters the septal myocardium of right ventricle to reach the anterior papillary muscle and then subendocardially to the apex of the heart[FMA]. the right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers[MP]." [FMA:9486, MP:0010567] synonym: "crus dextrum (fasciculi atrioventricularis)" EXACT [FMA:9486] synonym: "right bundle" EXACT [FMA:9486, MP:0010567] synonym: "right bundle branch" EXACT [FMA:9486] xref: FMA:9486 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0005988 name: atrium myocardial trabecula namespace: uberon def: "the supporting bundles of muscular fibers lining the walls of the atria" [MP:0010581] synonym: "atrial trabecula" EXACT [] synonym: "atrium myocardial trabeculae" EXACT PLURAL [MP:0010581] synonym: "trabecula of atrium" EXACT [] is_a: UBERON:0000440 ! trabecula is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002302 ! myocardium of atrium [Term] id: UBERON:0005989 name: atrioventricular septum namespace: uberon def: "the wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve" [MP:0010592] synonym: "membranous atrioventricular septum" EXACT [FMA:7136] xref: FMA:7136 xref: SCTID:280151006 is_a: UBERON:0002099 ! cardiac septum is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0005990 name: aortic valve cusp namespace: uberon def: "the three fibrous triangular components and associated flap of the aortic valve" [MP:0010595] synonym: "aortic semilunar valvule" EXACT [FMA:7251] synonym: "aortic valvular cusp" EXACT [FMA:7251] synonym: "cusp of aortic valve" EXACT [FMA:7251] synonym: "semilunar valvule of aortic valve" EXACT [FMA:7251] xref: FMA:7251 xref: SCTID:362026005 is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002137 ! aortic valve [Term] id: UBERON:0005991 name: aortic valve anulus namespace: uberon def: "the fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps" [MP:0010598] synonym: "anulus of aortic valve" EXACT [FMA:9502] synonym: "aortic anulus" EXACT [FMA:9502] synonym: "aortic valvar anulus" EXACT [FMA:9502] synonym: "fibrous ring of aortic valve" EXACT [FMA:9502] xref: FMA:9502 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002137 ! aortic valve [Term] id: UBERON:0005992 name: pulmonary valve cusp namespace: uberon def: "the three fibrous triangular components and associated flap of the pulmonary valve" [MP:0010602] synonym: "cusp of pulmonary valve" EXACT [FMA:7248] synonym: "pulmonary semilunar valvule" EXACT [FMA:7248] synonym: "pulmonary valvular cusp" EXACT [FMA:7248] synonym: "semilunar cusp of pulmonary valve" EXACT [FMA:7248] synonym: "semilunar valvule of pulmonary valve" EXACT [FMA:7248] xref: FMA:7248 is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002146 ! pulmonary valve [Term] id: UBERON:0005993 name: pulmonary valve anulus namespace: uberon def: "the fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps" [MP:0010606] synonym: "anulus of pulmonary valve" EXACT [FMA:9503] synonym: "fibrous ring of pulmonary valve" EXACT [FMA:9503] synonym: "pulmonary anulus" EXACT [FMA:9503] synonym: "pulmonary valvar anulus" EXACT [FMA:9503] xref: FMA:9503 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002146 ! pulmonary valve [Term] id: UBERON:0005994 name: chordae tendineae namespace: uberon def: "the tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria" [MP:0010608, Wikipedia:Chordae_tendineae] synonym: "chorda tendinea" EXACT [FMA:12225] xref: FMA:12225 xref: GAID:564 xref: MESH:A.07.541.510.240 xref: ncithesaurus:Chordae_Tendineae is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002133 ! atrioventricular valve [Term] id: UBERON:0005995 name: mitral valve anulus namespace: uberon def: "the fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps" [MP:0010613] synonym: "anulus of mitral valve" EXACT [FMA:9498] synonym: "fibrous ring of mitral valve" EXACT [FMA:9498] synonym: "mitral anulus" EXACT [FMA:9498] synonym: "mitral valvar anulus" EXACT [FMA:9498] xref: FMA:9498 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0005996 name: mitral valve cusp namespace: uberon def: "the two fibrous components and associated flaps of the mitral valve" [MP:0010614] comment: TODO - add generic parent is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0005997 name: tricuspid valve anulus namespace: uberon def: "the fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp)" [MP:0010621] synonym: "anulus of tricuspid valve" EXACT [FMA:9500] synonym: "fibrous ring of tricuspid valve" EXACT [FMA:9500] synonym: "tricuspid anulus" EXACT [FMA:9500] synonym: "tricuspid valvar anulus" EXACT [FMA:9500] xref: FMA:9500 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002134 ! tricuspid valve [Term] id: UBERON:0005998 name: tricuspid valve cusp namespace: uberon def: "the three fibrous triangular components and associated flaps of the tricuspid valve" [MP:0010622] comment: TODO - check synonym: "cuspis septalis valvae atrioventricularis dextrae" EXACT [FMA:7240, FMA:TA] synonym: "septal cusp of right atrioventricular valve" EXACT [FMA:7240] synonym: "septal cusp of tricuspid valve" EXACT [FMA:7240] synonym: "septal leaflet of tricuspid valve" EXACT [FMA:7240] synonym: "septal tricuspid leaflet" EXACT [FMA:7240] xref: FMA:7240 xref: SCTID:261417002 is_a: UBERON:0005484 ! tricuspid valve leaflet is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002134 ! tricuspid valve [Term] id: UBERON:0005999 name: aorticopulmonary septum namespace: uberon def: "the spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta" [MP:0010650] is_a: UBERON:0002099 ! cardiac septum [Term] id: UBERON:0006001 name: intersomitic artery namespace: uberon def: "the small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries" [MP:0010662] xref: XAO:0004165 is_a: UBERON:0001637 ! artery is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0005805 ! dorsal aorta [Term] id: UBERON:0006002 name: vitelline artery namespace: uberon def: "the paired arteries that carry blood to the yolk sac / gut tube from the dorsal aorta; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult" [MP:0010664, Wikipedia:Vitelline_arteries] xref: EHDAA2:0002208 xref: EMAPA:16207 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006003 name: skin adnexa namespace: uberon def: "the tissue or structures associated with or embedded in the skin such as hair and hair follicles, sweat glands, sebaceous glands and claws or nails" [MP:0010678, Wikipedia:Skin_appendage, http://code.google.com/p/caro2/issues/detail?id=5] comment: editor note - add subclasses based on resolution of CARO tracker item. Also check: adnexal gland is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0006004 name: hair follicle matrix region namespace: uberon def: "the bulb region adjacent to the dermal papilla that contains rapidly proliferating matrix cells that give rise to the various cell lineages of the hair shaft and inner root sheath" [MP:0010686] synonym: "germinal matrix of hair bulb" EXACT [FMA:70772] synonym: "lower part of bulb of hair follicle" EXACT [FMA:70772] synonym: "lower zone of bulb of hair follicle" EXACT [FMA:70772] xref: FMA:70772 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005932 ! bulb of hair follicle [Term] id: UBERON:0006005 name: hair follicle isthmus namespace: uberon def: "the middle part of the hair follicle that extends from the sebaceous duct to the bulge" [MP:0010694] synonym: "isthmus of hair follicle" EXACT [FMA:70723] xref: FMA:70723 xref: ncithesaurus:Hair_Follicle_Isthmus is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0006006 name: metoptic pilar namespace: uberon def: "posterior border of the optic nerve foramen." [MP:0010705] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005745 ! optic canal [Term] id: UBERON:0006007 name: pre-Botzinger complex namespace: uberon def: "the group of interneurons within the medulla oblongata's ventral respiratory group that are important for the generation of ventilatory (inspiratory) rhythmogenesis[MP]. The Pre-BC6tzinger Complex (preBC6tC) is a cluster of interneurons in the ventrolateral medulla of the brainstem, which is essential to the generation of respiratory rhythm in mammals[WP]." [MP:0010745, Wikipedia:Pre-botzinger_complex] comment: the MP class implies this is part of both the medulla oblongata and the PSNS, which violates the spatial disjointness constraint. We weaken this to continuous_with here. synonym: "Pre-BC6tzinger Complex" EXACT [Wikipedia:Pre-botzinger_complex] synonym: "preBC6tC" EXACT [Wikipedia:Pre-botzinger_complex] xref: MA:0002577 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006331 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! brainstem nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006008 name: fibrous ring of heart namespace: uberon def: "The right and left fibrous rings of heart (anulus fibrosus cordis) surround the atrioventricular and arterial orifices, and are stronger upon the left than on the right side of the heart. The right fibrous ring is known as the anulus fibrosus dexter cordis, and the left is known as the anulus fibrosus sinister cordis. The atrioventricular rings serve for the attachment of the muscular fibers of the atria and ventricles, and for the attachment of the bicuspid and tricuspid valves. The left atrioventricular ring is closely connected, by its right margin, with the aortic arterial ring; between these and the right atrioventricular ring is a triangular mass of fibrous tissue, the trigonum fibrosum, which represents the os cordis seen in the heart of some of the larger animals, as the ox and elephant. Lastly, there is the tendinous band, already referred to, the posterior surface of the conus arteriosus. The fibrous rings surrounding the arterial orifices serve for the attachment of the great vessels and semilunar valves, they are known as The aortic annulus. Each ring receives, by its ventricular margin, the attachment of some of the muscular fibers of the ventricles; its opposite margin presents three deep semicircular notches, to which the middle coat of the artery is firmly fixed. The attachment of the artery to its fibrous ring is strengthened by the external coat and serous membrane externally, and by the endocardium internally. From the margins of the semicircular notches the fibrous structure of the ring is continued into the segments of the valves. The middle coat of the artery in this situation is thin, and the vessel is dilated to form the sinuses of the aorta and pulmonary artery." [Wikipedia:Fibrous_rings_of_heart] synonym: "Lower's ring" RELATED [BTO:0003628] synonym: "annulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart] synonym: "anulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart] synonym: "anulus fibrosus of heart" EXACT [FMA:9497] synonym: "aortic annulus" RELATED [Wikipedia:Fibrous_rings_of_heart] synonym: "coronary tendon" RELATED [BTO:0003628] synonym: "fibrous ring of heart" RELATED [Wikipedia:Fibrous_rings_of_heart] xref: BTO:0003628 xref: FMA:9497 is_a: UBERON:0006444 ! annulus fibrosus [Term] id: UBERON:0006009 name: cusp of cardiac valve namespace: uberon def: "Organ component which has as its parts the cusp proper, lunule and nodule of semilunar valvule[FMA]. The cusps of the heart valves serve to seal the heart valves when closed. There are three cusps for each valve except for the mitral valve, which has only two (hence its alternate name, \"bicuspid valve\"). \"Nodules\" are located at the tip of the valve, to form a tighter seal[WP]." [FMA:7232, Wikipedia:Cusps_of_heart_valves] synonym: "cardiac valve cusp" EXACT [FMA:7232] synonym: "cardiac valvular cusp" EXACT [FMA:7232] synonym: "cardiac valvule" EXACT [FMA:7232] synonym: "cardial valve cusp" EXACT [] synonym: "semilunar valvule" EXACT [FMA:7232] xref: FMA:7232 xref: SCTID:30822008 xref: ncithesaurus:Cardiac_Valve_Cusp is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000946 ! cardial valve [Term] id: UBERON:0006010 name: hyaloid canal namespace: uberon def: "Hyaloid canal is a small transparent canal running through the vitreous body from the optical nerve disc to the lens; in foetus it contains a prolongation of the central artery of the retina, the hyaloid artery. Other names: Cloquet's canal, Stilling's canal. The function of the canal is to provide an adjustable reservoir of mobile liquid which may be easily and rapidly displaced backwards in positive accommodation, forwards in negative accommodation[WP]. a passage running from in front of the optic disk to the lens of the eye; in the fetus, it transmits the hyaloid artery[TFD]." [Wikipedia:Hyaloid_canal, http://medical-dictionary.thefreedictionary.com/Hyaloid+canal] comment: in FMA, this is_a FMA:67388 portion of vitreous humor synonym: "canal of cloquet" EXACT [FMA:58837] synonym: "cloquet's canal" EXACT [FMA:58837] synonym: "stilling's canal" EXACT [FMA:58837] xref: FMA:58837 xref: SCTID:362506002 is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001798 ! vitreous body [Term] id: UBERON:0006011 name: hyaloid vein namespace: uberon def: "Vein internal to the eye." [ZFIN:ZDB-PUB-010205-5] synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047] xref: XAO:0004156 xref: ZFA:0005047 is_a: UBERON:0001638 ! vein is_a: UBERON:0005492 ! hyaloid vessel [Term] id: UBERON:0006012 name: interdigital region namespace: uberon synonym: "interdigit" RELATED [] synonym: "interdigit region" EXACT [] xref: BTO:0004670 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006013 name: hand interdigital region namespace: uberon synonym: "hand interdigit region" EXACT [MA:0000627] xref: MA:0000627 xref: VHOG:0000991 is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0002389 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! hand digit [Term] id: UBERON:0006014 name: foot interdigital region namespace: uberon synonym: "foot interdigit region" EXACT [MA:0000651] xref: MA:0000651 xref: VHOG:0000992 is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0001466 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! foot digit [Term] id: UBERON:0006015 name: webbed interdigital region namespace: uberon def: "Interdigital webbing is the presence of membranes of skin between the digits. Normally in mammals, webbing is present in the embryo but resorbed later in development, but in various mammal species it occasionally persists in adulthood.[1] In humans, it can be found in those suffering from LEOPARD syndrome and from Aarskog-Scott syndrome. Webbing between the digits of the hindfoot is also present in several mammals that spend part of their time in the water.[3] Webbing accommodates movement in the water[WP]." [Wikipedia:Interdigital_webbing] synonym: "interdigital webbing" EXACT [] synonym: "syndactylous interdigital region" EXACT [] synonym: "web" BROAD [] is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0008440 ! webbed autpod [Term] id: UBERON:0006016 name: interdigital region between digits 1 and 2 namespace: uberon is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006019 name: interdigital region between digits 2 and 3 namespace: uberon is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006022 name: interdigital region between digits 3 and 4 namespace: uberon is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006025 name: interdigital region between digits 4 and 5 namespace: uberon is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006026 name: interdigital region between fingers 1 and 2 namespace: uberon xref: EHDAA2:0000844 xref: EHDAA:6298 xref: EMAPA:17445 is_a: UBERON:0006013 ! hand interdigital region is_a: UBERON:0006016 ! interdigital region between digits 1 and 2 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006029 name: interdigital region between fingers 2 and 3 namespace: uberon xref: EHDAA2:0000847 xref: EHDAA:6304 xref: EMAPA:17448 is_a: UBERON:0006013 ! hand interdigital region is_a: UBERON:0006019 ! interdigital region between digits 2 and 3 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006032 name: interdigital region between fingers 3 and 4 namespace: uberon xref: EHDAA2:0000850 xref: EHDAA:6310 xref: EMAPA:17451 is_a: UBERON:0006013 ! hand interdigital region is_a: UBERON:0006022 ! interdigital region between digits 3 and 4 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006035 name: interdigital region between fingers 4 and 5 namespace: uberon xref: EHDAA2:0000853 xref: EHDAA:6316 xref: EMAPA:17454 is_a: UBERON:0006013 ! hand interdigital region is_a: UBERON:0006025 ! interdigital region between digits 4 and 5 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006038 name: interdigital region between toes 1 and 2 namespace: uberon xref: EHDAA2:0000856 xref: EHDAA:6148 xref: EMAPA:17476 is_a: UBERON:0006014 ! foot interdigital region is_a: UBERON:0006016 ! interdigital region between digits 1 and 2 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006041 name: interdigital region between toes 2 and 3 namespace: uberon xref: EHDAA2:0000859 xref: EHDAA:6154 xref: EMAPA:17479 is_a: UBERON:0006014 ! foot interdigital region is_a: UBERON:0006019 ! interdigital region between digits 2 and 3 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006044 name: interdigital region between toes 3 and 4 namespace: uberon xref: EHDAA2:0000862 xref: EHDAA:6160 xref: EMAPA:17482 is_a: UBERON:0006014 ! foot interdigital region is_a: UBERON:0006022 ! interdigital region between digits 3 and 4 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006047 name: interdigital region between toes 4 and 5 namespace: uberon xref: EHDAA2:0000865 xref: EHDAA:6166 xref: EMAPA:17485 is_a: UBERON:0006014 ! foot interdigital region is_a: UBERON:0006025 ! interdigital region between digits 4 and 5 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006048 name: digit 1 namespace: uberon comment: comment: This class represents all instances of the 1st digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006049 name: digit 2 namespace: uberon comment: comment: This class represents all instances of the 2nd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006050 name: digit 3 namespace: uberon comment: comment: This class represents all instances of the 3rd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006051 name: digit 4 namespace: uberon comment: comment: This class represents all instances of the 4th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006052 name: digit 5 namespace: uberon comment: comment: This class represents all instances of the 5th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006054 name: surface of occiput namespace: uberon def: "The occiput is the anatomical term for the posterior (back) portion of the head." [Wikipedia:Occiput] synonym: "occiput" RELATED [FMA:46479] synonym: "occiput surface" EXACT [FMA:46479] synonym: "regio occipitalis (capitis)" EXACT [FMA:46479] xref: FMA:46479 xref: galen:Occiput is_a: UBERON:0006056 ! posterior surface of head [Term] id: UBERON:0006056 name: posterior surface of head namespace: uberon is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0006057 name: multi-segment region namespace: uberon is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0006058 name: multi-limb segment region namespace: uberon is_a: UBERON:0006057 ! multi-segment region [Term] id: UBERON:0006059 name: falx cerebri namespace: uberon def: "The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age." [Wikipedia:Falx_cerebri] synonym: "cerebral falx" EXACT [FMA:83967] xref: EMAPA:18551 xref: FMA:83967 xref: SCTID:279275004 xref: ncithesaurus:Falx_Cerebri is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002363 ! dura mater [Term] id: UBERON:0006060 name: conotruncus namespace: uberon def: "The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis." [UBERON:gg] synonym: "rostral half of bulbus cordis" EXACT [EMAPA:16221] xref: EMAPA:16221 xref: EMAPA:16338 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004706 ! bulbus cordis [Term] id: UBERON:0006061 name: process of vertebra namespace: uberon comment: todo review w.r.t cartilage vs bone synonym: "vertebral process" EXACT [FMA:24530] xref: FMA:24530 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0006062 name: articular process of vertebra namespace: uberon def: "Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region[AAO]. The articular processes or zygapophyses of a vertebra, in human anatomy contain two superior and two inferior, spring from the junctions of the pedicles and laminae. These stick out of an end of a vertebra to lock with a zygapophysis on the next vertebra, to make the backbone more stable. The superior processes project upward from a lower vertebra, and their articular surfaces are directed more or less backward. The inferior processes project downward from a higher vertebra, and their articular surfaces are directed more or less forward and outward. The articular surfaces are coated with hyaline cartilage." [AAO:Pugener_and_Maglia_2008, Wikipedia:Articular_processes] comment: todo - class as endochondral bone, check species subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "articular process" BROAD [Wikipedia:Articular_processes] synonym: "processus articularis (zygapophysis)" EXACT [FMA:11952] synonym: "zygapophysis" EXACT [Wikipedia:Articular_processes] xref: AAO:0000710 xref: FMA:11952 xref: SCTID:317570004 xref: ZFA:0001603 is_a: UBERON:0006061 ! process of vertebra [Term] id: UBERON:0006063 name: cartilaginous neural arch namespace: uberon def: "One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch." [BTO:0001763] xref: BTO:0001763 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006065 name: hemal arch namespace: uberon def: "Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra[AAO]. Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone[ZFA]." [AAO:0000726, Wikipedia:Haemal_arch, ZFIN:curator] comment: TODO - add connection to neural arch subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "haemal arch" EXACT [AAO:0000726, ZFA:0000519] synonym: "ventral arch" RELATED [AAO:0000726] synonym: "ventral arcocentrum" EXACT [ZFA:0000519] xref: AAO:0000726 xref: ZFA:0000519 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! back bone relationship: part_of UBERON:0001095 ! caudal vertebra [Term] id: UBERON:0006067 name: musculature of hindlimb zeugopod namespace: uberon synonym: "leg musculature" EXACT [FMA:50211] synonym: "muscle group of leg" EXACT [FMA:50211] synonym: "set of muscles of leg" EXACT [FMA:50211] xref: FMA:50211 is_a: UBERON:0004466 ! musculature of leg [Term] id: UBERON:0006068 name: bone of tail namespace: uberon synonym: "tail bone" EXACT [MA:0000696] xref: MA:0000696 is_a: UBERON:0001474 ! bone [Term] id: UBERON:0006070 name: coccygeal vertebra namespace: uberon comment: todo - check why this is in MA as a separate class synonym: "caudal vertebra" BROAD SENSU [FMA:12527] synonym: "coccygea" RELATED [MA:0001420] synonym: "coccygeal segment" EXACT [] synonym: "fused tail vertebra" EXACT [UBERON:cjm] xref: FMA:12527 xref: MA:0001420 xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: SCTID:361774004 xref: galen:CoccygealVertebra xref: ncithesaurus:Coccygeal_Vertebra is_a: UBERON:0001095 ! caudal vertebra [Term] id: UBERON:0006071 name: caudal region namespace: uberon comment: merge with tail? synonym: "postsacral region" RELATED [AAO:0000082] synonym: "tail region" RELATED [AAO:0000082] xref: XAO:0000087 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0006072 name: cervical region of vertebral column namespace: uberon def: "That portion of the spine comprising the cervical vertebrae. The neck area of the spine." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] synonym: "cervical spinal column" EXACT [FMA:24138] synonym: "cervical spine" EXACT [FMA:24138] synonym: "cervical vertebral column" EXACT [FMA:24138] xref: AAO:0000092 xref: BTO:0004148 xref: EHDAA2:0000238 xref: EHDAA:5051 xref: EMAPA:17215 xref: FMA:24138 xref: SCTID:260488005 xref: ncithesaurus:Cervical_Spine is_a: UBERON:0006077 ! subdivision of vertebral column relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006073 name: thoracic region of vertebral column namespace: uberon def: "That part of the spine comprising the thoracic vertebrae." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] synonym: "columna vertebralis thoracicus" EXACT [FMA:9140] synonym: "thoracic spine" EXACT [FMA:9140] synonym: "thoracic vertebral column" EXACT [FMA:9140] xref: AAO:0000612 xref: BTO:0004150 xref: EHDAA2:0002013 xref: EHDAA:5063 xref: EMAPA:17396 xref: FMA:9140 xref: SCTID:243931006 xref: ncithesaurus:Thoracic_Spine is_a: UBERON:0006077 ! subdivision of vertebral column relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006074 name: lumbar region of vertebral column namespace: uberon def: "That portion of the spine comprising the lumbar vertebrae." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] synonym: "lumbar spine" EXACT [BTO:0004147] synonym: "lumbar vertebral column" EXACT [FMA:16203] xref: BTO:0004147 xref: EHDAA2:0001037 xref: EHDAA:5055 xref: EMAPA:17393 xref: FMA:16203 xref: GAID:31 xref: SCTID:243932004 xref: ncithesaurus:Lumbar_Spine is_a: UBERON:0006077 ! subdivision of vertebral column relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006075 name: sacral region of vertebral column namespace: uberon xref: AAO:0000724 xref: EHDAA2:0001772 xref: EHDAA:5059 xref: EMAPA:17676 xref: GAID:32 is_a: UBERON:0006077 ! subdivision of vertebral column relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006076 name: caudal region of vertebral column namespace: uberon def: "Region of the vertebral column posterior to the caudal-sacral region, that may consists of two or three to more than 100 vertebrae. These vertebrae exhibit a gradual reduction in the sizes of their transverse processes and zygapophyses, but these structures are never entirely absent. All caudal vertebrae bear haemal arches." [AAO:Duellman_and_Trueb_1994] synonym: "caudal region" RELATED [AAO:0000082] synonym: "postsacral region" RELATED [AAO:0000082] synonym: "tail region" RELATED [AAO:0000082] xref: AAO:0000082 is_a: UBERON:0006077 ! subdivision of vertebral column [Term] id: UBERON:0006077 name: subdivision of vertebral column namespace: uberon synonym: "vertebral column subdivision" EXACT [FMA:16201] xref: FMA:16201 is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0009568 ! trunk region of vertebral column relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0006078 name: subdivision of spinal cord lateral column namespace: uberon is_a: UBERON:0006080 ! segment of white matter of spinal cord relationship: part_of UBERON:0005374 ! spinal cord lateral column [Term] id: UBERON:0006079 name: subdivision of spinal cord dorsal column namespace: uberon synonym: "segment of dorsal funiculus of spinal cord" RELATED [FMA:258190] xref: FMA:258190 is_a: UBERON:0006080 ! segment of white matter of spinal cord relationship: part_of UBERON:0005373 ! spinal cord dorsal column [Term] id: UBERON:0006080 name: segment of white matter of spinal cord namespace: uberon xref: FMA:258174 is_a: UBERON:0002318 ! white matter of spinal cord [Term] id: UBERON:0006081 name: fundus of gallbladder namespace: uberon def: "The fundus of gallbladder is the portion of the gallbladder which lies the farthest from the cystic duct. It is covered with peritoneum. A traditional cholecystectomy is most commonly performed from the infundibulum to the fundus. It's at the same level as the transpyloric plane." [Wikipedia:Fundus_of_gallbladder] synonym: "fundus of the gallbladder" RELATED [Wikipedia:Fundus_of_gallbladder] synonym: "gallbladder fundus" EXACT [FMA:14536, Wikipedia:Fundus_of_gallbladder] xref: FMA:14536 xref: SCTID:245391004 xref: ncithesaurus:Gallbladder_Fundus is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0006082 name: fundus of urinary bladder namespace: uberon def: "The fundus of the urinary bladder is the base of the bladder, formed by the posterior wall. It is lymphatically drained by the external iliac lymph nodes. The peritoneum lies superior to the fundus[WP]." [Wikipedia:Fundus_of_the_urinary_bladder#Fundus] synonym: "base of urinary bladder" EXACT [FMA:15908] synonym: "fundus of bladder" BROAD [FMA:15908] synonym: "fundus vesicae" EXACT [FMA:15908, FMA:TA] synonym: "urinary bladder fundus" EXACT [FMA:15908] synonym: "urinary bladder fundus region" EXACT [MA:0001694] xref: EHDAA2:0000582 xref: EHDAA:9330 xref: EMAPA:18322 xref: FMA:15908 xref: MA:0001694 xref: SCTID:362226002 xref: VHOG:0001184 xref: ncithesaurus:Bladder_Fundus is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0006083 name: Perirhinal cortex namespace: uberon synonym: "Perirhinal area" EXACT [NIF_GrossAnatomy:nlx_anat_1005006] synonym: "perirhinal cortex" EXACT [NIF_GrossAnatomy:nlx_anat_1005006] xref: ABA:PERI xref: BM:Tel-Cx-PRh xref: BTO:0004355 xref: EFO:0001978 xref: MA:0000912 xref: NIF_GrossAnatomy:nlx_anat_1005006 is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0002022 ! insula [Term] id: UBERON:0006086 name: stria medullaris namespace: uberon def: "." [NIF_GrossAnatomy:birnlex_1066] synonym: "stria habenularis" EXACT [NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris (wenzel - wenzel)" EXACT [NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris of thalamus" EXACT [FMA:62080, NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris thalami" EXACT PLURAL [NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris thalamica" EXACT [NIF_GrossAnatomy:birnlex_1066] xref: BM:Die-SM xref: FMA:62080 xref: NIF_GrossAnatomy:birnlex_1066 xref: SCTID:362368004 is_a: UBERON:0002757 ! regional part of epithalamus [Term] id: UBERON:0006087 name: internal arcuate fiber bundle namespace: uberon synonym: "arcuate fibers medial lemniscus" EXACT [NIF_GrossAnatomy:birnlex_1091] synonym: "fibrae arcuatae internae" EXACT [FMA:72629, FMA:TA] synonym: "internal arcuate fibers" EXACT [FMA:72629, NIF_GrossAnatomy:birnlex_1091] synonym: "internal arcuate fibres" EXACT [FMA:72629] synonym: "internal arcuate tract" EXACT [FMA:72629] xref: FMA:72629 xref: NIF_GrossAnatomy:birnlex_1091 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006088 name: inferior parietal cortex namespace: uberon def: "Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1194] synonym: "inferior parietal cortex" EXACT [NIF_GrossAnatomy:birnlex_1194] synonym: "inferior parietal lobule" EXACT [FMA:77536, NIF_GrossAnatomy:birnlex_1194] xref: EFO:0001951 xref: FMA:77536 xref: NIF_GrossAnatomy:birnlex_1194 xref: SCTID:362336007 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0006089 name: dorsal external arcuate fiber bundle namespace: uberon synonym: "dorsal external arcuate fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1250] synonym: "dorsal external arcuate fibers" EXACT [FMA:72630, NIF_GrossAnatomy:birnlex_1250] synonym: "dorsal external arcuate tract" EXACT [FMA:72630] synonym: "dorsal superficial arcuate fibers" EXACT [FMA:72630, NIF_GrossAnatomy:birnlex_1250] synonym: "external arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1250] xref: FMA:72630 xref: NIF_GrossAnatomy:birnlex_1250 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006090 name: glossopharyngeal nerve fiber bundle namespace: uberon synonym: "central part of glossopharyngeal nerve" EXACT [FMA:72627, NIF_GrossAnatomy:birnlex_1274] synonym: "glossopharyngeal nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1274] synonym: "glossopharyngeal nerve fibers" EXACT [FMA:72627, NIF_GrossAnatomy:birnlex_1274] synonym: "glossopharyngeal nerve tract" EXACT [FMA:72627] synonym: "ninth cranial nerve fibers" EXACT [FMA:72627, NIF_GrossAnatomy:birnlex_1274] xref: FMA:72627 xref: NIF_GrossAnatomy:birnlex_1274 is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006091 name: inferior horn of the lateral ventricle namespace: uberon def: "The part of the lateral ventricle extending downward and anteriorly in the temporal lobe." [NIF_GrossAnatomy:birnlex_1292] synonym: "cornu inferius ventriculi lateralis" EXACT [FMA:83701, FMA:TA] synonym: "inferior horn of lateral ventricle" EXACT [FMA:83701] synonym: "inferior horn of the lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1292] synonym: "temporal horn of lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1292] xref: FMA:83701 xref: NIF_GrossAnatomy:birnlex_1292 xref: SCTID:362315005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0006092 name: cuneus cortex namespace: uberon def: "Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneate lobule" EXACT [FMA:61903, NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus" EXACT [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus cortex" EXACT [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus gyrus" EXACT [FMA:61903, NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus of hemisphere" EXACT [FMA:61903, NIF_GrossAnatomy:birnlex_1396] xref: FMA:61903 xref: NIF_GrossAnatomy:birnlex_1396 xref: SCTID:279199007 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0006093 name: precuneus cortex namespace: uberon def: "Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1446] synonym: "precuneate lobule" EXACT [FMA:61900, NIF_GrossAnatomy:birnlex_1446] synonym: "precuneus" EXACT [NIF_GrossAnatomy:birnlex_1446] synonym: "precuneus cortex" EXACT [NIF_GrossAnatomy:birnlex_1446] synonym: "quadrate lobule" EXACT [FMA:61900, NIF_GrossAnatomy:birnlex_1446] xref: FMA:61900 xref: NIF_GrossAnatomy:birnlex_1446 xref: SCTID:279200005 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0006094 name: superior parietal cortex namespace: uberon def: "Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1450] synonym: "superior parietal cortex" EXACT [NIF_GrossAnatomy:birnlex_1450] synonym: "superior parietal gyrus" EXACT [FMA:61899, NIF_GrossAnatomy:birnlex_1450] synonym: "superior parietal lobule" EXACT [NIF_GrossAnatomy:birnlex_1450] synonym: "superior portion of parietal gyrus" EXACT [FMA:61899, NIF_GrossAnatomy:birnlex_1450] xref: FMA:61899 xref: NIF_GrossAnatomy:birnlex_1450 xref: SCTID:279168006 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0006095 name: anterior transverse termporal area 41 namespace: uberon synonym: "Brodmann's area 41" EXACT [NIF_GrossAnatomy:birnlex_1582] synonym: "anterior transverse temporal area 41" EXACT [FMA:68638] synonym: "anterior transverse termporal area 41" EXACT [NIF_GrossAnatomy:birnlex_1582] synonym: "area 41 of Brodmann" EXACT [FMA:68638, NIF_GrossAnatomy:birnlex_1582] synonym: "brodmann area 41" EXACT [FMA:68638] synonym: "principle auditory receptive areas" EXACT [NIF_GrossAnatomy:birnlex_1582] xref: FMA:68638 xref: NIF_GrossAnatomy:birnlex_1582 is_a: UBERON:0002619 ! regional part of cerebral cortex is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006096 name: posterior transverse termporal area 42 namespace: uberon synonym: "Brodmann's area 42" EXACT [NIF_GrossAnatomy:birnlex_1589] synonym: "area 42 of Brodmann" EXACT [FMA:68639, NIF_GrossAnatomy:birnlex_1589] synonym: "auditory association area" EXACT [NIF_GrossAnatomy:birnlex_1589] synonym: "brodmann area 42" EXACT [FMA:68639] synonym: "posterior transverse temporal area 42" EXACT [FMA:68639] synonym: "posterior transverse termporal area 42" EXACT [NIF_GrossAnatomy:birnlex_1589] xref: FMA:68639 xref: NIF_GrossAnatomy:birnlex_1589 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! regional part of cerebral cortex is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006097 name: ventral external arcuate fiber bundle namespace: uberon synonym: "ventral external arcuate fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1628] synonym: "ventral external arcuate fibers" EXACT [FMA:72631, NIF_GrossAnatomy:birnlex_1628] synonym: "ventral external arcuate tract" EXACT [FMA:72631] xref: FMA:72631 xref: NIF_GrossAnatomy:birnlex_1628 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006098 name: basal nuclear complex namespace: uberon def: "The deep nuclei found in the basal forebrain." [NIF_GrossAnatomy:birnlex_1629] synonym: "basal ganglia" RELATED INCONSISTENT [NIF_GrossAnatomy:birnlex_1629] synonym: "basal nuclei" EXACT [NIF_GrossAnatomy:birnlex_1629] synonym: "basal nuclei of the forebrain" EXACT [NIF_GrossAnatomy:birnlex_1629] xref: EV:0100182 xref: NIF_GrossAnatomy:birnlex_1629 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0002743 ! basal forebrain [Term] id: UBERON:0006099 name: Brodmann (1909) area 1 namespace: uberon def: "." [NIF_GrossAnatomy:birnlex_1732] synonym: "Area postcentralis intermedia" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "B09-1" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "Brodmann (1909) area 1" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "Brodmann area 1" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "Brodmann's area 1" EXACT [FMA:68597] synonym: "area 1 of Brodmann" EXACT [FMA:68597] synonym: "area 1 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "intermediate postcentral" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "intermediate postcentral area" EXACT [FMA:68597] xref: FMA:68597 xref: NIF_GrossAnatomy:birnlex_1732 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006100 name: Brodmann (1909) area 3 namespace: uberon def: "." [NIF_GrossAnatomy:birnlex_1734] synonym: "Area postcentralis oralis" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "B09-3" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "Brodmann (1909) area 3" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "Brodmann area 3" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "Brodmann's area 3" EXACT [FMA:68599] synonym: "area 3 of Brodmann" EXACT [FMA:68599] synonym: "area 3 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "rostral postcentral" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "rostral postcentral area" EXACT [FMA:68599] xref: FMA:68599 xref: NIF_GrossAnatomy:birnlex_1734 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006101 name: Brodmann (1909) area 24 namespace: uberon def: "." [NIF_GrossAnatomy:birnlex_1755] synonym: "Area cingularis anterior ventralis" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "B09-24" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "Brodmann (1909) area 24" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "Brodmann area 24" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "area 24 of Brodmann" EXACT [FMA:68621] synonym: "area 24 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "ventral anterior cingulate" EXACT [NIF_GrossAnatomy:birnlex_1755] xref: FMA:68621 xref: NIF_GrossAnatomy:birnlex_1755 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006102 name: Brodmann (1909) area 35 namespace: uberon synonym: "Area perirhinalis" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "B09-35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann (1909) area 35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann Area 35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann area 35, perirhinal" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann's area 35" EXACT [FMA:68632] synonym: "Brodmann.35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "area 35 of Brodmann" EXACT [FMA:68632] synonym: "area 35 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "perirhinal area 35" EXACT [FMA:68632] xref: BTO:0004356 xref: FMA:68632 xref: NIF_GrossAnatomy:birnlex_1768 xref: SCTID:384790006 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006104 name: Brodmann (1909) area 36 namespace: uberon synonym: "Area ectorhinalis" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "B09-36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "Brodmann (1909) area 36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "Brodmann area 36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "Brodmann.36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "area 36 of Brodmann" EXACT [FMA:68633] synonym: "area 36 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "ectorhinal" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "ectorhinal area 36" EXACT [FMA:68633] xref: BTO:0004357 xref: FMA:68633 xref: NIF_GrossAnatomy:birnlex_1769 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006105 name: basis modioli namespace: uberon is_obsolete: true synonym: "basis modioli cochleae" EXACT [FMA:75640, FMA:TA] xref: FMA:75640 xref: NIF_GrossAnatomy:birnlex_2522 [Term] id: UBERON:0006106 name: cochlear canal namespace: uberon synonym: "cochlear canal" EXACT [NIF_GrossAnatomy:birnlex_2553] synonym: "spiral canal of cochlea" EXACT [NIF_GrossAnatomy:birnlex_2553] synonym: "wall of cochlea" EXACT [FMA:75371] xref: FMA:75371 xref: NIF_GrossAnatomy:birnlex_2553 xref: SCTID:279779009 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0006107 name: basolateral amygdaloid nuclear complex namespace: uberon synonym: "BL" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "Basolateral nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "amygdalar basolateral nucleus" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "amygdaloid basolateral complex" EXACT [FMA:84016, NIF_GrossAnatomy:birnlex_2679] synonym: "basolateral amygdaloid nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "basolateral nuclear group" EXACT [FMA:84016, NIF_GrossAnatomy:birnlex_2679] synonym: "basolateral nuclei of amygdala" EXACT [FMA:84016] synonym: "pars basolateralis (Corpus amygdaloideum)" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "vicarious cortex" EXACT [FMA:84016, NIF_GrossAnatomy:birnlex_2679] xref: FMA:84016 xref: NIF_GrossAnatomy:birnlex_2679 is_a: UBERON:0000465 ! material anatomical entity is_a: UBERON:0002791 ! regional part of telencephalon property_value: "spatially_disjoint_from" UBERON:0002023 [Term] id: UBERON:0006108 name: corticomedial nuclear complex namespace: uberon synonym: "CMA" EXACT [NIF_GrossAnatomy:birnlex_2680] synonym: "amygdalar corticomedial nucleus" EXACT [NIF_GrossAnatomy:birnlex_2680] synonym: "corticomedial nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2680] synonym: "corticomedial nuclear group" EXACT [FMA:84015, NIF_GrossAnatomy:birnlex_2680] synonym: "corticomedial nuclei of amygdala" EXACT [FMA:84015] synonym: "pars corticomedialis (Corpus amygdaloideum)" EXACT [NIF_GrossAnatomy:birnlex_2680] xref: FMA:84015 xref: NIF_GrossAnatomy:birnlex_2680 is_a: UBERON:0000465 ! material anatomical entity is_a: UBERON:0002791 ! regional part of telencephalon [Term] id: UBERON:0006114 name: lateral occipital cortex namespace: uberon def: "Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_735] synonym: "gyrus occipitalis medius (mai)" EXACT [FMA:61902] synonym: "gyrus occipitalis secundus" EXACT [FMA:61902] synonym: "lateral occipital cortex" EXACT [NIF_GrossAnatomy:birnlex_735] synonym: "lateral occipital gyrus" EXACT [NIF_GrossAnatomy:birnlex_735] xref: FMA:61902 xref: NIF_GrossAnatomy:birnlex_735 xref: SCTID:369218006 is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0006115 name: posterior column of fornix namespace: uberon synonym: "crus fornicis" EXACT [FMA:61969, FMA:TA] synonym: "crus of fornix" EXACT [FMA:61969, NIF_GrossAnatomy:birnlex_754] synonym: "posterior column of fornix" EXACT [NIF_GrossAnatomy:birnlex_754] synonym: "posterior column of fornix of forebrain" EXACT [FMA:61969] synonym: "posterior crus of fornix" EXACT [FMA:61969, NIF_GrossAnatomy:birnlex_754] synonym: "posterior pillar of fornix" EXACT [FMA:61969, NIF_GrossAnatomy:birnlex_754] xref: FMA:61969 xref: NIF_GrossAnatomy:birnlex_754 xref: SCTID:369116002 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0002780 ! regional part of forebrain [Term] id: UBERON:0006116 name: vagal nerve fiber bundle namespace: uberon synonym: "central part of vagus nerve" EXACT [FMA:72628, NIF_GrossAnatomy:birnlex_765] synonym: "tenth cranial nerve fibers" EXACT [FMA:72628, NIF_GrossAnatomy:birnlex_765] synonym: "vagal nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_765] synonym: "vagal nerve fibers" EXACT [FMA:72628, NIF_GrossAnatomy:birnlex_765] synonym: "vagal nerve tract" EXACT [FMA:72628] xref: FMA:72628 xref: NIF_GrossAnatomy:birnlex_765 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006117 name: accessory nerve fiber bundle namespace: uberon synonym: "accessory nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_916] synonym: "accessory nerve fibers" EXACT [FMA:72626, NIF_GrossAnatomy:birnlex_916] synonym: "accessory nerve tract" EXACT [FMA:72626] synonym: "eleventh cranial nerve fibers" EXACT [FMA:72626] xref: FMA:72626 xref: NIF_GrossAnatomy:birnlex_916 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006118 name: lamina I of gray matter of spinal cord namespace: uberon synonym: "Lamina marginalis" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "Layer of Waldeyer" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "Rexed lamina I" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "Rexed layer 1" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "Spinal lamina I" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "lamina i of gray matter of spinal cord" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "lamina marginalis" EXACT [FMA:68862] synonym: "lamina spinalis i" EXACT [FMA:68862, FMA:TA] synonym: "layer of waldeyer" EXACT [FMA:68862] synonym: "rexed lamina i" EXACT [FMA:68862] synonym: "spinal lamina i" EXACT [FMA:68862] xref: FMA:68862 xref: NIF_GrossAnatomy:nlx_anat_100203 is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0006119 name: subbrachial nucleus namespace: uberon synonym: "subbrachial nucleus" EXACT [NIF_GrossAnatomy:nlx_anat_1005003] synonym: "tegmental area of tsai" EXACT [FMA:77494] xref: FMA:77494 xref: NIF_GrossAnatomy:nlx_anat_1005003 is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0006120 name: superior colliculus superficial gray layer namespace: uberon synonym: "lamina II of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris ii" EXACT [FMA:72407, FMA:TA] synonym: "layer II of superior colliculus" EXACT [FMA:72407] synonym: "outer gray layer of superior colliculus" EXACT [FMA:72407] synonym: "stratum griseum superficiale colliculi superioris" EXACT [FMA:72407, FMA:TA] synonym: "stratum griseum superficiale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "superficial gray layer of superior colliculus" EXACT [FMA:72407] synonym: "superficial grey layer of superior colliculus" EXACT [FMA:72407] synonym: "superior colliculus superficial gray layer" EXACT [NIF_GrossAnatomy:nlx_anat_1005034] xref: ABA:SCsg xref: FMA:72407 xref: NIF_GrossAnatomy:nlx_anat_1005034 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus property_value: "spatially_disjoint_from" UBERON:0006779 property_value: "spatially_disjoint_from" UBERON:0006780 [Term] id: UBERON:0006121 name: hemispheric lobule VIII namespace: uberon synonym: "Biventer 1 (HVIII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "Biventral Lobule" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "Lobulus Biventer" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "Paraflocculus Dorsalis" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "biventer lobule" EXACT [FMA:72526] synonym: "biventral lobule" EXACT [FMA:72526] synonym: "biventral lobule [h viii]" EXACT [FMA:72526] synonym: "cuneiform lobe" EXACT [FMA:72526] synonym: "dorsal parafloccularis [h viii b]" EXACT [FMA:72526] synonym: "dorsal paraflocculus" EXACT [FMA:72526] synonym: "hemispheric lobule viii" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "lobulus biventer [h viii]" EXACT [FMA:72526, FMA:TA] synonym: "lobulus parafloccularis dorsalis [h viii b]" EXACT [FMA:72526, FMA:TA] xref: FMA:72526 xref: NIF_GrossAnatomy:nlx_anat_20081211 is_a: UBERON:0004003 ! cerebellum hemisphere lobule [Term] id: UBERON:0006122 name: retrorubral area namespace: uberon synonym: "A8" EXACT [NIF_GrossAnatomy:nlx_anat_20090301] synonym: "a8" EXACT [FMA:66581] synonym: "anterior basal segmental arterial trunk" EXACT [FMA:66581] synonym: "retrorubral area" EXACT [NIF_GrossAnatomy:nlx_anat_20090301] synonym: "trunk of anterior basal segmental artery" EXACT [FMA:66581] xref: FMA:66581 xref: NIF_GrossAnatomy:nlx_anat_20090301 is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0006123 name: horizontal limb of the diagonal band namespace: uberon synonym: "Diagonal band horizontal limb" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] synonym: "Horizontal limb of the diagonal band of Broca" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] synonym: "hDBB" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] synonym: "horizontal limb of diagonal band" EXACT [FMA:77611] synonym: "horizontal limb of the diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] xref: FMA:77611 xref: NIF_GrossAnatomy:nlx_anat_20090303 is_a: UBERON:0006125 ! subdivision of diagonal band [Term] id: UBERON:0006124 name: vertical limb of the diagonal band namespace: uberon synonym: "Vertical limb of the diagonal band of Broca" EXACT [NIF_GrossAnatomy:nlx_anat_20090304] synonym: "vertical limb of diagonal band" EXACT [FMA:77612] synonym: "vertical limb of the diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090304] xref: FMA:77612 xref: NIF_GrossAnatomy:nlx_anat_20090304 is_a: UBERON:0006125 ! subdivision of diagonal band [Term] id: UBERON:0006125 name: subdivision of diagonal band namespace: uberon synonym: "diagonal band subdivision" EXACT [FMA:77610] synonym: "regional part of diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090302] xref: FMA:77610 xref: NIF_GrossAnatomy:nlx_anat_20090302 is_a: UBERON:0002791 ! regional part of telencephalon [Term] id: UBERON:0006127 name: funiculus of spinal cord namespace: uberon synonym: "spinal cord funiculus" EXACT [FMA:77460] synonym: "white column of spinal cord" EXACT [FMA:77460] xref: FMA:77460 is_a: UBERON:0006080 ! segment of white matter of spinal cord is_a: UBERON:0006133 ! funiculus of neuraxis relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0006133 name: funiculus of neuraxis namespace: uberon def: "The cerebrospinal nerves consist of numerous nerve fibers collected together and enclosed in membranous sheaths. A small bundle of fibers, enclosed in a tubular sheath, is called a funiculus; if the nerve is of small size, it may consist only of a single funiculus; but if large, the funiculi are collected together into larger bundles or fasciculi, which are bound together in a common membranous investment. Examples include: Anterior funiculus of the spinal cord Lateral funiculus of the spinal cord Posterior funiculus of the spinal cord Funiculus solitarius of the medulla Funiculus separans" [Wikipedia:Funiculus_%28neurology%29] xref: FMA:76738 is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0006134 name: nerve fiber namespace: uberon def: "A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if existence) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system" [Wikipedia:Nerve_fiber] synonym: "nerve fibre" EXACT [FMA:5914] synonym: "neurofibra" EXACT [FMA:5914, FMA:TA] synonym: "neurofibrum" EXACT [FMA:5914] xref: FMA:5914 xref: MESH:A.08.663.542 xref: SCTID:88545005 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001019 ! fascicle [Term] id: UBERON:0006135 name: myelinated nerve fiber namespace: uberon comment: consider adding link to UBERON:0002316 xref: FMA:5915 xref: GAID:745 xref: MESH:A.08.663.542.512 xref: SCTID:362296008 xref: ncithesaurus:Myelinated_Nerve_Fiber is_a: UBERON:0006134 ! nerve fiber [Term] id: UBERON:0006136 name: unmyelinated nerve fiber namespace: uberon synonym: "non-myelinated nerve fiber" EXACT [FMA:5916] xref: FMA:5916 xref: GAID:767 xref: MESH:A.08.663.542.756 xref: SCTID:46920005 xref: ncithesaurus:Unmyelinated_Nerve_Fiber is_a: UBERON:0006134 ! nerve fiber [Term] id: UBERON:0006137 name: proper palmar digital artery namespace: uberon def: "The proper palmar digital arteries travel along the sides of the phalanges (along the contiguous sides of the index, middle, ring, and little fingers), each artery lying just below its corresponding digital nerve. Alternative names for these arteries are: proper volar digital arteries, collateral digital arteries, arteriae digitales palmares propriae, or aa. digitales volares propriae. They anastomose freely in the subcutaneous tissue of the finger tips and by smaller branches near the interphalangeal joints. Each also gives off a couple of dorsal branches which anastomose with the dorsal digital arteries, and supply the soft parts on the back of the second and third phalanges, including the matrix of the fingernail. The proper palmar digital artery for the medial side of the little finger arises directly from the ulnar artery deep to the palmaris brevis muscle, but the rest arise from the common palmar digital arteries." [Wikipedia:Proper_palmar_digital_arteries] comment: the MA term, even though plural, represents the singular, as it is an isa child of artery synonym: "arteriae digitales palmares propriae" EXACT [FMA:70804, FMA:TA] synonym: "proper palmal digital arteries" EXACT [MA:0001959] synonym: "proper palmar digital arteries" EXACT [MA:0001959] synonym: "proper palmar digital arteries set" EXACT [FMA:70804] synonym: "proper volar digital arteries" RELATED [Wikipedia:Proper_palmar_digital_arteries] synonym: "proper volar digital artery" RELATED [Wikipedia:Proper_palmar_digital_arteries] xref: FMA:70804 xref: MA:0001959 is_a: UBERON:0006141 ! palmar digital artery [Term] id: UBERON:0006138 name: plantar digital artery namespace: uberon xref: FMA:43971 xref: SCTID:230727008 is_a: UBERON:0004554 ! hindlimb digital artery [Term] id: UBERON:0006139 name: plantar digital vein namespace: uberon def: "The plantar digital veins arise from plexuses on the plantar surfaces of the digits, and, after sending intercapitular veins to join the dorsal digital veins, unite to form four metatarsal veins." [Wikipedia:Plantar_digital_veins] xref: FMA:44517 is_a: UBERON:0004564 ! hindlimb digital vein [Term] id: UBERON:0006140 name: palmar digital vein namespace: uberon def: "The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins. Some sources distinguish between the \"proper palmar digital veins\", which are more distal, and the \"common palmar digital veins\", which are more proximal." [Wikipedia:Palmar_digital_veins] synonym: "palmar digital veins" EXACT PLURAL [FMA:70895] synonym: "palmar digital veins set" EXACT PLURAL [FMA:70895] synonym: "venae digitales palmares" EXACT [FMA:70895, FMA:TA] synonym: "volar digital veins" RELATED [Wikipedia:Palmar_digital_veins] xref: FMA:70895 xref: SCTID:83229009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png is_a: UBERON:0004563 ! forelimb digital vein [Term] id: UBERON:0006141 name: palmar digital artery namespace: uberon is_a: UBERON:0004553 ! forelimb digital artery [Term] id: UBERON:0006142 name: common plantar digital vein namespace: uberon synonym: "common plantar vein" EXACT [MA:0002134] xref: MA:0002134 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006143 name: proper plantar digital vein namespace: uberon synonym: "proper plantar vein" EXACT [MA:0002138] xref: MA:0002138 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006144 name: medial plantar digital vein namespace: uberon synonym: "medial plantar vein" EXACT [MA:0002172] xref: MA:0002172 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006145 name: dorsal digital artery of foot namespace: uberon def: "The dorsal digital arteries of foot are small arteries which supply the toes." [Wikipedia:Dorsal_digital_arteries_of_foot] xref: FMA:44660 xref: SCTID:230173000 is_a: UBERON:0004554 ! hindlimb digital artery is_a: UBERON:0006163 ! dorsal digital artery [Term] id: UBERON:0006146 name: dorsal digital artery of hand namespace: uberon def: "Dorsal digital arteries arise from the bifurcation of dorsal metacarpal arteries. They travel along the sides and dorsal aspects of the phalanges of the middle finger, ring finger, and little finger. They communicate with the proper palmar digital arteries. They run with the dorsal digital nerves of ulnar nerve and dorsal digital nerves of radial nerve." [Wikipedia:Dorsal_digital_arteries] synonym: "dorsal digital artery" BROAD [Wikipedia:Dorsal_digital_arteries] xref: SCTID:91793005 is_a: UBERON:0004553 ! forelimb digital artery is_a: UBERON:0006163 ! dorsal digital artery [Term] id: UBERON:0006163 name: dorsal digital artery namespace: uberon synonym: "arteriae digitales dorsales" EXACT [FMA:70801, FMA:TA] synonym: "dorsal digital arteries" EXACT [FMA:70801] synonym: "dorsal digital arteries set" EXACT [FMA:70801] xref: FMA:70801 is_a: UBERON:0004552 ! digital artery [Term] id: UBERON:0006164 name: forelimb common dorsal digital arteries namespace: uberon xref: MA:0001954 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006165 name: median dorsal digital artery for digit 1 namespace: uberon synonym: "median dorsal digital artery for digit 01" EXACT [MA:0001955] xref: MA:0001955 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006166 name: lateral dorsal digital artery for digit 5 namespace: uberon synonym: "lateral dorsal digital artery for digit 05" EXACT [MA:0001956] xref: MA:0001956 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006167 name: forelimb proper dorsal digital arteries namespace: uberon xref: MA:0001958 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006168 name: hindlimb common dorsal digital arteries namespace: uberon xref: MA:0001965 is_a: UBERON:0006145 ! dorsal digital artery of foot [Term] id: UBERON:0006169 name: hindlimb proper dorsal digital arteries namespace: uberon xref: MA:0001967 is_a: UBERON:0006145 ! dorsal digital artery of foot [Term] id: UBERON:0006170 name: mesonephric capsule namespace: uberon def: "The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GO:0061285, GOC:mtg_kidney_jan10] is_a: UBERON:0002015 ! kidney capsule [Term] id: UBERON:0006171 name: renal sinus namespace: uberon xref: FMA:15611 xref: SCTID:362222000 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0006172 name: rectal diverticulum namespace: uberon def: "The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior" [GO:0039009] xref: XAO:0001015 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0006173 name: pronephric proximal tubule namespace: uberon def: "A pronephric nephron tubule is an epithelial tube that is part of the pronephros" [GO:0039011] synonym: "pronephros proximal tubule" EXACT [GO:0039011] is_a: UBERON:0004134 ! proximal tubule [Term] id: UBERON:0006174 name: pronephric sinus namespace: uberon def: "The pronephric sinus is an ill-defined capillary network that lies between the pronephric tubules" [GO:0039012] comment: todo - check relationship to renal sinus, improve definition xref: AAO:0011092 xref: XAO:0000385 is_a: UBERON:0006171 ! renal sinus relationship: develops_from UBERON:0002064 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! common cardinal vein relationship: develops_from UBERON:0003087 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! anterior cardinal vein [Term] id: UBERON:0006175 name: pronephric distal tubule namespace: uberon def: "A pronephric nephron tubule is an epithelial tube that is part of the pronephros" [GO:0039013] is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0005310 ! pronephric nephron tubule [Term] id: UBERON:0006182 name: mesonephric glomerular mesangium namespace: uberon def: "The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus" [GO:0061247] is_a: UBERON:0002320 ! glomerular mesangium [Term] id: UBERON:0006183 name: mesonephric glomerular capillary namespace: uberon def: "." [GO:0061249] is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0004212 ! glomerular capillary is_a: UBERON:0005327 ! mesonephric glomerular epithelium [Term] id: UBERON:0006189 name: mesonephric connecting tubule namespace: uberon def: "The mesonephric connecting tubule is a tubular segment of the mesonephric nephron; it connects the distal tubule to the collecting duct in the mesonephros" [GO:0061272] is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0005097 ! connecting tubule is_a: UBERON:0005330 ! mesonephric nephron epithelium [Term] id: UBERON:0006190 name: mesonephric distal tubule namespace: uberon def: "The mesonephric distal tubule is a mesonephric nephron tubule that begins at the macula densa and extends to the mesonephric connecting tubule" [GO:0061273] comment: note that ZFA has terms for developing tubule is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0005330 ! mesonephric nephron epithelium [Term] id: UBERON:0006192 name: mesonephric proximal tubule namespace: uberon def: "The mesonephric proximal tubule extends from the capsule to the distal tubule" [GO:0061275] comment: note that ZFA has terms for developing tubule is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0004134 ! proximal tubule is_a: UBERON:0005330 ! mesonephric nephron epithelium [Term] id: UBERON:0006194 name: renal sinus of right kidney namespace: uberon synonym: "right renal sinus" EXACT [FMA:17621] xref: FMA:17621 is_a: UBERON:0006171 ! renal sinus [Term] id: UBERON:0006195 name: renal sinus of left kidney namespace: uberon synonym: "left renal sinus" EXACT [FMA:17622] xref: FMA:17622 is_a: UBERON:0006171 ! renal sinus [Term] id: UBERON:0006196 name: mesonephric sinus namespace: uberon comment: todo - check relationship to renal sinus, add definition xref: AAO:0011063 xref: XAO:0000381 is_a: UBERON:0006171 ! renal sinus relationship: part_of UBERON:0004122 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! genitourinary system [Term] id: UBERON:0006197 name: auricular vein namespace: uberon xref: ncithesaurus:Auricular_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006198 name: dorsal intercostal artery namespace: uberon def: "The highest intercostal artery (supreme intercostal artery, superior intercostal artery) is an artery in the human body that usually gives rise to the first and second posterior intercostal arteries, which supply blood to their corresponding intercostal space. It usually arises from the costocervical trunk, which is a branch of the subclavian artery." [Wikipedia:Highest_intercostal_artery] comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "dorsal branch of superior intercostal artery" RELATED [http://www.mondofacto.com/facts/dictionary?dorsal+branch+of+the+superior+intercostal+artery] synonym: "superior intercostal artery" EXACT [FMA:76998, Wikipedia:Highest_intercostal_artery] synonym: "supreme intercostal artery" EXACT [FMA:76998, Wikipedia:Highest_intercostal_artery] xref: FMA:76998 xref: MA:0001943 xref: SCTID:198427009 is_a: UBERON:0005612 ! intercostal artery [Term] id: UBERON:0006199 name: caudal auricular vein namespace: uberon def: "The posterior auricular vein begins upon the side of the head, in a plexus which communicates with the tributaries of the occipital vein and superficial temporal veins. It descends behind the auricula, and joins the posterior division of the posterior facial vein to form the external jugular. It receive the stylomastoid vein, and some tributaries from the cranial surface of the auricula." [Wikipedia:Posterior_auricular_vein] comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "posterior auricular vein" EXACT [FMA:50851] xref: FMA:50851 xref: MA:0002090 xref: SCTID:150188002 xref: ncithesaurus:Posterior_Auricular_Vein is_a: UBERON:0006197 ! auricular vein [Term] id: UBERON:0006200 name: caudal humeral circumflex vein namespace: uberon comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "posterior circumflex humeral vein" EXACT [FMA:71216] synonym: "posterior humeral circumflex vein" EXACT [FMA:71216] synonym: "vena circumflexa humeri posterior" EXACT [FMA:71216, FMA:TA] xref: FMA:71216 xref: MA:0002091 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006201 name: dorsal cerebral vein namespace: uberon comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "superior cerebral vein" EXACT [FMA:50978] xref: FMA:50978 xref: MA:0002103 xref: SCTID:244393005 is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0006202 name: ventral labial vein namespace: uberon def: "The inferior labial vein is the vein receiving blood from the lower lip." [Wikipedia:Inferior_labial_vein] comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "inferior labial vein" EXACT [FMA:52541] xref: FMA:52541 xref: MA:0002260 xref: SCTID:422955002 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006203 name: conchal part of pinna namespace: uberon synonym: "concha" BROAD [FMA:61006] synonym: "concha auriculae" EXACT [FMA:61006, FMA:TA] synonym: "concha of auricle" EXACT [FMA:61006] synonym: "concha of pinna" EXACT [FMA:61006] xref: FMA:61006 xref: ncithesaurus:Concha is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0006204 name: inguinal ligament namespace: uberon def: "a band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh." [Wikipedia:Inguinal_ligament] synonym: "Poupart's ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament] synonym: "Vesalius' ligament" EXACT [FMA:19855] synonym: "fallopian ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament] xref: FMA:19855 xref: SCTID:361900000 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005442 ! external oblique [Term] id: UBERON:0006205 name: pectineal ligament namespace: uberon comment: we include a disjointness axiom to avoid confusion that may arise from the synonyms 'ligamentum pectineale' and 'ligamentum pectinum' synonym: "cooper's ligament (groin)" EXACT [FMA:20188] synonym: "ligamentum pectineale" EXACT [FMA:20188] xref: FMA:20188 xref: SCTID:256661003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006204 ! inguinal ligament [Term] id: UBERON:0006206 name: iridocorneal angle namespace: uberon def: "acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]." [MP:0004221] synonym: "anterior chamber angle" EXACT [FMA:58577] xref: FMA:58577 xref: SCTID:244498000 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0003956 ! aqueous drainage system [Term] id: UBERON:0006207 name: aortico-pulmonary spiral septum namespace: uberon def: "The aorticopulmonary septum is developmentally formed from neural crest, specifically the cardiac neural crest, and actively separates the aorta and pulmonary arteries and fuses with the interventricular septum within the heart during development. The actual mechanism of septation of the outflow tract is poorly understood, but is recognized as a dynamic process with contributions from contractile, hemodynamic, and extracellular matrix interactions." [Wikipedia:Aorticopulmonary_septum] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "aortic septum" RELATED [Wikipedia:Aorticopulmonary_septum] synonym: "aortico-pulmonary septum" RELATED [Wikipedia:Aorticopulmonary_septum] synonym: "aorticopulmonary septum" RELATED [Wikipedia:Aorticopulmonary_septum] synonym: "spiral septum" RELATED [Wikipedia:Aorticopulmonary_septum] xref: EHDAA2:0000136 xref: EHDAA:2592 xref: EMAPA:16827 xref: VHOG:0000502 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0006208 name: auditory hillocks namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000155 xref: EHDAA:4685 xref: EMAPA:17280 xref: VHOG:0001364 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0006209 name: basioccipital cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000164 xref: EHDAA:7141 xref: EMAPA:18337 xref: VHOG:0001124 is_a: UBERON:0005863 ! cartilaginous condensation [Term] id: UBERON:0006210 name: body-wall mesenchyme namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000179 xref: EHDAA:3217 xref: EMAPA:16893 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0006211 name: buccopharyngeal membrane namespace: uberon def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane] xref: EHDAA2:0000189 xref: EHDAA:536 xref: EMAPA:16259 xref: SCTID:361412007 xref: VHOG:0000380 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0006264 ! mouth-foregut junction [Term] id: UBERON:0006212 name: bulbo-ventricular groove namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000195 xref: EHDAA:766 xref: EMAPA:16693 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0006213 name: carpus cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000221 xref: EHDAA:8544 xref: EMAPA:18102 xref: VHOG:0001123 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005863 ! cartilaginous condensation [Term] id: UBERON:0006214 name: carpus pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000222 xref: EHDAA:6324 xref: EMAPA:17724 xref: VHOG:0000955 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0006215 name: rhombic lip namespace: uberon def: "The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cerebellum primordium" RELATED [EMAPA:17074] synonym: "dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074] xref: EHDAA2:0000229 xref: EMAPA:17074 xref: XAO:0004135 xref: ZFA:0001440 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0006216 name: cervical sinus namespace: uberon def: "The mandibular and hyoid arches grow more rapidly than those behind them, with the result that the latter become, to a certain extent, telescoped within the former, and a deep depression, the cervical sinus, is formed on either side of the neck." [Wikipedia:Cervical_sinus] comment: This sinus is bounded in front by the hyoid arch, and behind by the thoracic wall; it is ultimately obliterated by the fusion of its walls. subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "sinus cervicalis" EXACT [Wikipedia:Cervical_sinus] xref: EHDAA2:0000078 xref: EMAPA:17526 xref: RETIRED_EHDAA2:0000239 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0006217 name: cloacal membrane namespace: uberon def: "The cloacal membrane is the membrane that covers the embryonic cloaca when still in the development of the urinary and reproductive organs. It is formed by ectoderm and endoderm coming into contact with each other. After separation of the cloaca into the urogenital and anal parts, the cloacal membrane, in turn, is separated into a urogenital membrane and an anal membrane." [Wikipedia:Cloacal_membrane] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000257 xref: EHDAA:214 xref: EHDAA:2933 xref: EMAPA:16832 xref: SCTID:308826008 xref: VHOG:0001198 xref: ncithesaurus:Cloacal_Membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000163 ! embryonic cloaca [Term] id: UBERON:0006218 name: common atrial chamber namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:1267 xref: EMAPA:16225 xref: EMAPA:16342 xref: EMAPA:16689 xref: RETIRED_EHDAA2:0000268 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0006219 name: deltoid pre-muscle mass namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000340 xref: EHDAA:6002 xref: EMAPA:17749 is_a: UBERON:0008714 ! pre-muscle mass [Term] id: UBERON:0006220 name: diencephalic part of interventricular foramen namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000384 xref: EHDAA:3476 xref: EMAPA:16643 xref: EMAPA:16901 xref: VHOG:0000808 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0006222 name: future diencephalon namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: EFO:0003442 xref: EHDAA2:0000600 xref: EHDAA:844 xref: EMAPA:16514 xref: RETIRED_EHDAA2:0000386 xref: ZFA:0000574 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0006223 name: dorsal meso-oesophagus namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:2945 xref: EMAPA:16704 xref: EMAPA:16837 xref: EMAPA:18865 xref: MA:0001570 xref: RETIRED_EHDAA2:0000412 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003283 ! mesentery of oesophagus [Term] id: UBERON:0006224 name: elbow joint primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000431 xref: EHDAA:8483 xref: EMAPA:17710 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0003318 ! mesenchyme of elbow [Term] id: UBERON:0006225 name: endocardial tissue namespace: uberon comment: consider merging with endocardium subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EMAPA:17868 xref: RETIRED_EHDAA2:0000435 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0006226 name: endolymphatic appendage namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000437 xref: EMAPA:16994 xref: EMAPA:17283 xref: VHOG:0000373 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0006227 name: ethmoid bone primordium namespace: uberon comment: check UBERON:0007215 subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000456 xref: EHDAA:8363 xref: EMAPA:18023 is_a: UBERON:0001048 ! primordium [Term] id: UBERON:0006228 name: exoccipital pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000457 xref: EHDAA:8355 xref: EMAPA:18014 xref: VHOG:0000963 is_a: UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0006230 name: extrinsic ocular pre-muscle mass namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000483 xref: EHDAA:2925 xref: EMAPA:17845 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008714 ! pre-muscle mass relationship: part_of UBERON:0003269 ! skeletal muscle of eye [Term] id: UBERON:0006231 name: facial bones primordia namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000488 xref: EHDAA:9552 xref: EMAPA:18024 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0006232 name: facio-acoustic VII-VIII preganglion complex namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:1477 xref: EMAPA:16660 xref: RETIRED_EHDAA2:0000496 xref: VHOG:0000715 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001714 ! cranial ganglion [Term] id: UBERON:0006233 name: female genital tubercle namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:8118 xref: EMAPA:18680 xref: RETIRED_EHDAA2:0000500 xref: VHOG:0000666 is_a: UBERON:0005876 ! genital tubercle [Term] id: UBERON:0006234 name: femur pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000508 xref: EMAPA:17502 xref: VHOG:0000951 is_a: UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0006235 name: foregut-midgut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000569 xref: EHDAA:526 xref: EMAPA:16363 xref: VHOG:0000291 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0006236 name: frontal bone primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000577 xref: EHDAA:9540 xref: EMAPA:18017 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0006238 name: future brain namespace: uberon comment: obsoleted in EHDAA2 subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "presumptive brain" EXACT [ZFA:0000146] xref: EFO:0003431 xref: EHDAA:300 xref: EHDAA:830 xref: EMAPA:16089 xref: EMAPA:16471 xref: RETIRED_EHDAA2:0000591 xref: ZFA:0000146 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007284 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive neural plate [Term] id: UBERON:0006239 name: future central tendon namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000593 xref: EHDAA:4118 xref: EMAPA:25035 is_a: UBERON:0000043 ! tendon is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006240 name: future forebrain namespace: uberon comment: TODO. Add relationships to neural plate (both ZFA and EMAPA time this with the neural plate) subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "presumptive forebrain" EXACT [ZFA:0000062] synonym: "prosencephalon" RELATED [] xref: EFO:0003423 xref: EHDAA2:0000661 xref: EHDAA:2643 xref: EMAPA:16640 xref: ZFA:0000062 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006238 ! future brain relationship: part_of UBERON:0007284 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive neural plate [Term] id: UBERON:0006241 name: future spinal cord namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "presumptive spinal cord" EXACT [ZFA:0000417] xref: EFO:0003438 xref: EHDAA2:0000674 xref: EHDAA:898 xref: EMAPA:16092 xref: EMAPA:16525 xref: EMAPA:16755 xref: ZFA:0000417 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0007284 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive neural plate [Term] id: UBERON:0006242 name: gall bladder primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000700 xref: EHDAA:3047 xref: EMAPA:16713 xref: EMAPA:16842 xref: XAO:0004205 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002423 ! hepatobiliary system relationship: part_of UBERON:0004912 ! biliary bud [Term] id: UBERON:0006243 name: glossopharyngeal IX preganglion namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:1479 xref: EMAPA:16661 xref: RETIRED_EHDAA2:0000713 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001714 ! cranial ganglion [Term] id: UBERON:0006244 name: hip joint primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000785 xref: EHDAA:8462 xref: EMAPA:17739 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: UBERON:0006245 name: humerus cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000787 xref: EHDAA:6240 xref: EMAPA:17713 xref: VHOG:0001120 is_a: UBERON:0005863 ! cartilaginous condensation [Term] id: UBERON:0006246 name: humerus pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000788 xref: EHDAA:4192 xref: EMAPA:17427 xref: VHOG:0000950 is_a: UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0006247 name: iliac cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000809 xref: EHDAA:9568 xref: EMAPA:18029 xref: EMAPA:18347 xref: VHOG:0001126 is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006248 name: incus pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000813 xref: EHDAA:9024 xref: EMAPA:17825 xref: VHOG:0000957 is_a: UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0006249 name: inferior recess namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000825 xref: EHDAA:6083 xref: EMAPA:18048 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0006250 name: infundibular recess of 3rd ventricle namespace: uberon def: "The floor of the third ventricle is prolonged downward as a funnel-shaped recess, the infundibular recess, into the infundibulum, and to the apex of the latter the hypophysis or pititary is attached" [Wikipedia:Infundibular_recess] comment: Editor note: in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac synonym: "infundibular recess" EXACT [FMA:78456] synonym: "recessus infundibularis" EXACT [FMA:TA] synonym: "recessus infundibuli" EXACT [FMA:TA] xref: EHDAA2:0000827 xref: EHDAA:4479 xref: EMAPA:16648 xref: EMAPA:16899 xref: FMA:78456 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 ! epithelial sac relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: UBERON:0006251 name: interparietal bone primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000881 xref: EMAPA:18018 is_a: UBERON:0001048 ! primordium [Term] id: UBERON:0006252 name: intersubcardinal venous anastomosis namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000883 xref: EHDAA:3452 xref: EMAPA:16828 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0006253 name: intraretinal space namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000889 xref: EHDAA:4761 xref: EMAPA:16676 xref: EMAPA:17170 xref: VHOG:0000534 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0006254 name: ischial cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000890 xref: EHDAA:9570 xref: EMAPA:26930 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006255 name: ischial pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000891 xref: EHDAA:7153 xref: EMAPA:18348 xref: VHOG:0000962 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006256 name: knee joint primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000897 xref: EHDAA:8467 xref: EMAPA:17740 is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003321 ! mesenchyme of knee [Term] id: UBERON:0006257 name: laryngo-tracheal groove namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0004073 xref: EMAPA:16739 xref: RETIRED_EHDAA2:0000909 xref: SCTID:361426003 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0006258 name: lateral plate mesenchyme namespace: uberon comment: Editors note: todo - merge with LP mesoderm, review mesoderm/mesenchyme terminology subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000919 xref: EHDAA:379 xref: EMAPA:16179 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0006259 name: lens pit namespace: uberon def: "a pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]." [http://medical-dictionary.thefreedictionary.com/lens+pit] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000981 xref: EHDAA:3809 xref: EMAPA:16799 xref: VHOG:0000806 xref: ncithesaurus:Lens_Pit is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0006260 name: lingual swellings namespace: uberon comment: the collection consisting of the two lateral swellings and the medial swelling subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "lingual swelling" RELATED [EHDAA2:0000996] xref: EHDAA2:0000996 xref: EMAPA:17186 xref: VHOG:0000449 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0010056 ! future tongue [Term] id: UBERON:0006261 name: male genital tubercle namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:8138 xref: EMAPA:17969 xref: RETIRED_EHDAA2:0001048 xref: VHOG:0000667 is_a: UBERON:0005876 ! genital tubercle [Term] id: UBERON:0006262 name: malleus pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001055 xref: EHDAA:9026 xref: EMAPA:17826 xref: VHOG:0000958 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0006263 name: Meckel's cartilage pre-cartilage condensation namespace: uberon comment: Development notes: NC contributes in EHDAA2. Todo: use EHDAA2 structure subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001074 xref: EMAPA:17358 xref: VHOG:0001121 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006264 name: mouth-foregut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:534 xref: EMAPA:16258 xref: RETIRED_EHDAA2:0001205 xref: VHOG:0000592 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0006265 name: mural trophectoderm namespace: uberon def: "Trophectoderm that surrounds blastocyst cavity." [PMID:16341078] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001206 xref: EHDAA:58 xref: EMAPA:16047 xref: VHOG:0000597 is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0004345 ! trophectoderm [Term] id: UBERON:0006266 name: nasolacrimal groove namespace: uberon def: "On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct." [Wikipedia:Lacrimal_groove] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001238 xref: EHDAA:4770 xref: EMAPA:16679 xref: VHOG:0001307 xref: ncithesaurus:Nasolacrimal_Groove is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006267 name: notochordal plate namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001278 xref: EHDAA:264 xref: EMAPA:16101 xref: VHOG:0001212 xref: ncithesaurus:Notochordal_Plate is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006268 name: notochordal process namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001279 xref: EHDAA:224 xref: EMAPA:16102 xref: VHOG:0001213 xref: ncithesaurus:Notochordal_Process is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006269 name: optic foramen namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001312 xref: EHDAA:10646 xref: EMAPA:18716 xref: VHOG:0001408 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0006270 name: optic pit namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:944 xref: EMAPA:16325 xref: RETIRED_EHDAA2:0001316 xref: VHOG:0001162 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006271 name: orbital fissure namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001328 xref: EHDAA:10648 xref: EMAPA:18717 xref: SCTID:280546005 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0006272 name: oronasal cavity namespace: uberon def: "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001331 xref: EHDAA:5882 xref: EMAPA:17200 xref: VHOG:0001352 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0006273 name: otic pit namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001336 xref: EHDAA:929 xref: EMAPA:16536 xref: VHOG:0001147 xref: ncithesaurus:Otic_Pit is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006274 name: parietal bone primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001404 xref: EHDAA:9544 xref: EMAPA:18019 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006275 name: pericardio-peritoneal canal namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001440 xref: EHDAA:636 xref: EMAPA:16282 xref: SCTID:361428002 xref: VHOG:0000564 xref: ncithesaurus:Pericardioperitoneal_Canal is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0006276 name: perioptic mesenchyme namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:4751 xref: EMAPA:17167 xref: RETIRED_EHDAA2:0001444 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006277 name: pleuropericardial canals namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001479 xref: EHDAA:4122 xref: EMAPA:17704 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006278 name: pleuropericardial folds namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001480 xref: EHDAA:4126 xref: EMAPA:17706 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006279 name: pleuroperitoneal canal namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001481 xref: EHDAA:4128 xref: EMAPA:17707 xref: EMAPA:25031 xref: SCTID:361413002 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006280 name: polar trophectoderm namespace: uberon def: "Trophectoderm that surrounds the inner cell mass (ICM)." [PMID:16341078] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001484 xref: EHDAA:60 xref: EMAPA:16048 xref: VHOG:0000980 is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0004345 ! trophectoderm [Term] id: UBERON:0006281 name: pre-hepatic part namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:8701 xref: EMAPA:18422 xref: RETIRED_EHDAA2:0001492 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006282 name: primary head vein namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001498 xref: EHDAA:818 xref: EMAPA:16242 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006283 name: primitive ventricle of heart namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "primitive ventricle" EXACT [EHDAA2:0001531] xref: EHDAA2:0001531 xref: EMAPA:16233 xref: EMAPA:16350 xref: SCTID:361524003 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005498 ! primitive heart tube [Term] id: UBERON:0006284 name: prosencephalic vesicle namespace: uberon comment: todo - all vesicles subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001571 xref: EHDAA:1356 xref: EMAPA:16521 xref: VHOG:0000644 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006285 name: pubic cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001574 xref: EHDAA:9572 xref: EMAPA:18349 xref: EMAPA:26928 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006286 name: radius cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001585 xref: EHDAA:7267 xref: EMAPA:18054 xref: VHOG:0001318 is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: UBERON:0006287 name: radius-ulna pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001587 xref: EHDAA:4178 xref: EMAPA:17420 xref: VHOG:0000949 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: UBERON:0006288 name: rib cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001716 xref: EHDAA:8347 xref: EMAPA:17678 xref: VHOG:0001122 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005482 ! thoracic region relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: UBERON:0006289 name: rib pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001717 xref: EHDAA:6026 xref: EMAPA:17397 xref: VHOG:0000681 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005482 ! thoracic region relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: UBERON:0006290 name: scapula cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001777 xref: EHDAA:8368 xref: EMAPA:18343 xref: VHOG:0001125 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006291 name: scapula pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001778 xref: EHDAA:6041 xref: EMAPA:18027 xref: VHOG:0000960 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006292 name: shoulder joint primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001836 xref: EHDAA:8493 xref: EMAPA:17712 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003322 ! mesenchyme of shoulder [Term] id: UBERON:0006293 name: spleen primordium namespace: uberon def: "A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium." [ISBN:0123747295] comment: todo - check difference between splenic and spleen in EMAPA synonym: "left spleen primordium" NARROW [XAO:0000326] synonym: "splenic primordium" EXACT [EHDAA2:0001904] xref: EHDAA2:0001904 xref: EHDAA:3003 xref: EMAPA:18535 xref: EMAPA:18659 xref: XAO:0000326 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0005602 ! dorsal mesogastrium [Term] id: UBERON:0006294 name: stapes pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001910 xref: EHDAA:5699 xref: EMAPA:17827 xref: VHOG:0000956 is_a: UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0006295 name: sternebral bone pre-cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001912 xref: EHDAA:9565 xref: EMAPA:18345 xref: VHOG:0000961 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0006296 name: subcardinal vein namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001932 xref: EHDAA:2631 xref: EMAPA:16829 xref: SCTID:308830006 xref: VHOG:0001336 xref: ncithesaurus:Subcardinal_Vein is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006297 name: sublingual gland primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001935 xref: EHDAA:7989 xref: EMAPA:17752 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0006298 name: submandibular gland primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001939 xref: EHDAA:9255 xref: EMAPA:17755 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0006299 name: superior recess namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001958 xref: EHDAA:2343 xref: EMAPA:18049 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0006300 name: supracardinal vein namespace: uberon def: "Either of two veins in the mammalian embryo and various adult lower vertebrate forms located in the thoracic and abdominal regions dorsolateral to and on either side of the descending aorta and giving rise to the azygos and hemiazygos veins and a part of the inferior vena cava[MW]. These veins drain the body wall via the segmental intercostal veins, thus taking over the function of the posterior cardinals[ISBN]" [ISBN-10:0443065837, http://www.merriam-webster.com/medical/supracardinal%20vein] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001964 xref: EHDAA:7492 xref: EMAPA:16830 xref: SCTID:308829001 xref: ncithesaurus:Supracardinal_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0006301 name: telencephalic part of interventricular foramen namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001980 xref: EHDAA:5474 xref: EMAPA:16654 xref: EMAPA:16915 xref: VHOG:0000809 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0006303 name: tracheal diverticulum namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EMAPA:16740 xref: RETIRED_EHDAA2:0002072 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006304 name: trigeminal V preganglion namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:924 xref: EMAPA:16663 xref: RETIRED_EHDAA2:0002089 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001714 ! cranial ganglion [Term] id: UBERON:0006305 name: tunica vasculosa lentis namespace: uberon def: "an extensive capillary network, spreading over the posterior and lateral surfaces of the lens of the eye. It disappears shortly after birth." [Wikipedia:Tunica_vasculosa_lentis] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0002097 xref: EHDAA:5705 xref: EMAPA:18235 xref: VHOG:0000978 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005607 ! hyaloid vascular plexus [Term] id: UBERON:0006306 name: ulna cartilage condensation namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0002098 xref: EHDAA:7269 xref: EMAPA:18055 xref: VHOG:0001155 is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: UBERON:0006307 name: urogenital membrane namespace: uberon comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0004025 xref: EHDAA:7011 xref: EMAPA:17210 xref: EMAPA:17378 xref: RETIRED_EHDAA2:0002141 xref: SCTID:172994001 xref: VHOG:0001187 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system relationship: part_of UBERON:0004122 ! genitourinary system [Term] id: UBERON:0006308 name: vagal X nerve trunk namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0002160 xref: EHDAA:4659 xref: EMAPA:17272 xref: VHOG:0000736 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0004293 ! parasympathetic nerve [Term] id: UBERON:0006309 name: venous vitelline plexus namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA:1945 xref: EMAPA:17020 xref: RETIRED_EHDAA2:0002172 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006310 name: vitelline venous plexus namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0002210 xref: EHDAA:1945 xref: EMAPA:17020 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006311 name: chamber of eyeball namespace: uberon def: "Chamber of eyeball[FMA]" [FMA:58071] synonym: "eye chamber" EXACT [MA:0002459] synonym: "eyeball chamber" EXACT [FMA:58071] xref: BTO:0002085 xref: FMA:58071 xref: MA:0002459 xref: SCTID:280540004 xref: ncithesaurus:Chamber_of_the_Eye is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006312 name: ocular refractive media namespace: uberon xref: MA:0001911 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006314 name: bodily fluid namespace: uberon def: "Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not." [MESH:A.12.207, Wikipedia:Body_fluid] comment: consider merging with parent class synonym: "body fluid" EXACT [GAID:266] xref: GAID:266 xref: MESH:A.12.207 xref: NIF_GrossAnatomy:birnlex_20 xref: galen:BodyFluid is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006318 name: orbitalis muscle namespace: uberon def: "An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion." [Wikipedia:Orbitalis_muscle] comment: subclass of 'muscle layer' in FMA synonym: "musculus orbitalis" EXACT [FMA:49034, FMA:TA] synonym: "orbital muscle" EXACT [FMA:49034] synonym: "orbital muscle of muller" EXACT [FMA:49034] synonym: "orbitalis" EXACT [FMA:49034, Wikipedia:Orbitalis_muscle] xref: FMA:49034 xref: MA:0001274 xref: SCTID:368790005 xref: ncithesaurus:Orbitalis_Muscle is_a: UBERON:0003660 ! eyelid muscle is_a: UBERON:0006660 ! muscle layer [Term] id: UBERON:0006319 name: spinal cord reticular nucleus namespace: uberon synonym: "spinal reticular nucleus" EXACT [FMA:73909] xref: FMA:73909 xref: MA:0001123 is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0006320 name: inferior oblique extraocular muscle namespace: uberon comment: Taxon notes (via VHOG): \"The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.\" Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "inferior oblique" EXACT [FMA:49040] synonym: "inferior oblique muscle" EXACT [] synonym: "obliquus inferior" EXACT [FMA:49040] xref: FMA:49040 xref: MA:0001276 xref: SCTID:181156006 xref: VHOG:0001132 xref: ZFA:0000861 xref: ncithesaurus:Inferior_Oblique_Muscle is_a: UBERON:0006532 ! oblique extraocular muscle [Term] id: UBERON:0006321 name: superior oblique extraocular muscle namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "obliquus superior" EXACT [FMA:49039] synonym: "superior oblique" EXACT [FMA:49039] synonym: "superior oblique muscle" EXACT [] xref: FMA:49039 xref: MA:0001277 xref: SCTID:181155005 xref: VHOG:0001131 xref: ZFA:0000738 xref: ncithesaurus:Superior_Oblique_Muscle is_a: UBERON:0006532 ! oblique extraocular muscle [Term] id: UBERON:0006322 name: inferior rectus extraocular muscle namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "inferior rectus" EXACT [FMA:49036] synonym: "inferior rectus muscle" EXACT [] xref: FMA:49036 xref: MA:0001279 xref: SCTID:181154009 xref: VHOG:0001130 xref: ZFA:0000457 xref: ncithesaurus:Inferior_Rectus_Muscle is_a: UBERON:0006533 ! rectus extraocular muscle is_a: UBERON:0000933 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal muscle [Term] id: UBERON:0006323 name: superior rectus extraocular muscle namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "superior rectus" EXACT [FMA:49035] synonym: "superior rectus muscle" EXACT [] xref: FMA:49035 xref: MA:0001282 xref: SCTID:181153003 xref: VHOG:0001128 xref: ZFA:0000345 xref: ncithesaurus:Superior_Rectus_Muscle is_a: UBERON:0006533 ! rectus extraocular muscle [Term] id: UBERON:0006325 name: laryngeal intrinsic ligament namespace: uberon synonym: "intrinsic ligament of larynx" EXACT [FMA:72058] xref: FMA:72058 xref: MA:0001757 xref: SCTID:279557001 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0006326 name: base of arytenoid namespace: uberon synonym: "arytenoid cartilage base" EXACT [FMA:55349] synonym: "base of arytenoid" EXACT [FMA:55349] synonym: "base of arytenoid cartilage" EXACT [FMA:55349] xref: FMA:55349 xref: MA:0001761 xref: SCTID:279532006 is_a: UBERON:0001994 ! hyaline cartilage is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0003572 ! chest connective tissue is_a: UBERON:0003583 ! larynx connective tissue is_a: UBERON:0004267 ! back connective tissue is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005174 ! back organ is_a: UBERON:0005175 ! chest organ is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001740 ! arytenoid cartilage [Term] id: UBERON:0006327 name: laryngeal extrinsic muscle namespace: uberon synonym: "extrinsic muscle of larynx" EXACT [FMA:55225] xref: FMA:55225 xref: MA:0001769 xref: SCTID:244808004 is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0006328 name: laryngeal intrinsic muscle namespace: uberon synonym: "intrinsic muscle of larynx" EXACT [FMA:55226] xref: FMA:55226 xref: MA:0001770 xref: SCTID:244810002 is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0006329 name: superior pharyngeal constrictor namespace: uberon synonym: "constrictor muscle of pharynx superior" EXACT [FMA:46621] synonym: "musculus constrictor pharyngis superior" EXACT [FMA:46621, FMA:TA] synonym: "superior constrictor" EXACT [FMA:46621] synonym: "superior constrictor muscle" EXACT [ncithesaurus:Superior_Constrictor_Muscle] synonym: "superior constrictor of pharynx" EXACT [FMA:46621] synonym: "superior constrictor pharyngeus" EXACT [FMA:46621] xref: FMA:46621 xref: MA:0002280 xref: SCTID:244800006 xref: ncithesaurus:Superior_Constrictor_Muscle is_a: UBERON:0001569 ! constrictor muscle of pharynx [Term] id: UBERON:0006330 name: anterior lingual gland namespace: uberon synonym: "anterior lingual salivary gland" EXACT [FMA:59796] synonym: "lingual salivary gland" EXACT [FMA:59796] xref: FMA:59796 xref: MA:0002701 xref: SCTID:362179003 xref: ncithesaurus:Lingual_Salivary_Gland is_a: UBERON:0001830 ! minor salivary gland relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0006331 name: brainstem nucleus namespace: uberon xref: MA:0000821 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0006332 name: nasal capsule namespace: uberon def: "Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium[ZFA]. The cartilage surrounding the developing nasal cavity of an embryo[TFD]. Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium[AAO]." [AAO:0000313, ZFA:0005507, http://dictionary.reference.com/browse/nasal+capsule] comment: todo - check this. split? subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0000313 xref: EMAPA:17852 xref: MA:0000283 xref: ZFA:0005507 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0006333 name: snout namespace: uberon def: "Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout." [ZFA:0005496] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "muzzle" RELATED [MA:0001910] xref: MA:0001910 xref: SCTID:41127006 xref: ZFA:0005496 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0006334 name: posterior lateral line namespace: uberon def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFA:0000944] comment: check XAO/AAO subset: dubious_grouping ! Indicates that subclasses in AOs may be inappropriately linked synonym: "pll" EXACT [ZFA:0000944] xref: AAO:0011024 xref: EFO:0003595 xref: XAO:0000465 xref: ZFA:0000944 is_a: UBERON:0010202 ! lateral line relationship: develops_from UBERON:0005497 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! non-neural ectoderm [Term] id: UBERON:0006336 name: unspecified namespace: uberon is_obsolete: true xref: XAO:0003003 xref: ZFA:0001093 [Term] id: UBERON:0006337 name: distal early tubule namespace: uberon def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [ZFA:0005293] comment: in XAO this is pronephric; in ZFA it is an adult structure. we treat it here as generic. consider placing XAO under proneprhic subclass. check relationship with EDCT. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: AAO:0011034 xref: EMAPA:27788 xref: EMAPA:28007 xref: EMAPA:28390 xref: XAO:0000287 xref: ZFA:0005293 is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0005310 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! pronephric nephron tubule is_a: UBERON:0006553 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! renal duct [Term] id: UBERON:0006338 name: lateral ventricle choroid plexus stroma namespace: uberon comment: editors note: definitions should be fixed to use generic stroma class xref: MA:0000963 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle [Term] id: UBERON:0006339 name: third ventricle choroid plexus stroma namespace: uberon xref: MA:0000881 is_a: UBERON:0002784 ! regional part of diencephalon is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle [Term] id: UBERON:0006340 name: fourth ventricle choroid plexus stroma namespace: uberon xref: MA:0000985 is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0005206 ! choroid plexus stroma relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle [Term] id: UBERON:0006341 name: outer renal medulla peritubular capillary namespace: uberon xref: MA:0002589 is_a: UBERON:0005272 ! peritubular capillary [Term] id: UBERON:0006342 name: left hepatic recess namespace: uberon xref: EMAPA:18047 xref: MA:0000444 is_a: UBERON:0006442 ! hepatic recess [Term] id: UBERON:0006343 name: right hepatic recess namespace: uberon xref: EMAPA:18050 xref: MA:0000450 is_a: UBERON:0006442 ! hepatic recess [Term] id: UBERON:0006345 name: stapedial artery namespace: uberon def: "A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]." [MP:0004665] synonym: "stapedial" RELATED [EHDAA2:0001908] synonym: "stapedial artery temporary" EXACT [EHDAA2:0001908] xref: EHDAA2:0001908 xref: EMAPA:17313 xref: MA:0002044 xref: SCTID:361518009 xref: ncithesaurus:Stapedial_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0006347 name: communicating artery namespace: uberon comment: Grouping for anterior and posterior xref: EMAPA:18598 xref: MA:0001938 xref: ncithesaurus:Communicating_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006349 name: epigastric artery namespace: uberon xref: EMAPA:18750 xref: MA:0001948 xref: MESH:A.07.231.114.330 xref: SCTID:261400009 xref: ncithesaurus:Epigastric_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006351 name: principal vein of forelimb namespace: uberon xref: EMAPA:17018 xref: MA:0002199 is_a: UBERON:0003515 ! forelimb blood vessel is_a: UBERON:0006443 ! prinicipal vein of limb [Term] id: UBERON:0006353 name: principal vein of hindlimb namespace: uberon xref: EMAPA:17019 xref: MA:0002200 is_a: UBERON:0003516 ! hindlimb blood vessel is_a: UBERON:0006443 ! prinicipal vein of limb [Term] id: UBERON:0006355 name: superior vesical vein namespace: uberon xref: EMAPA:18646 xref: MA:0002227 is_a: UBERON:0002460 ! vesical vein [Term] id: UBERON:0006356 name: epigastric vein namespace: uberon xref: EMAPA:18759 xref: MA:0002114 xref: ncithesaurus:Epigastric_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006358 name: vasa hyaloidea propria namespace: uberon xref: EMAPA:18236 xref: MA:0001285 is_a: UBERON:0005607 ! hyaloid vascular plexus [Term] id: UBERON:0006359 name: mesoduodenum namespace: uberon xref: EMAPA:17183 xref: EMAPA:17198 xref: EMAPA:19082 xref: MA:0001556 is_a: UBERON:0001170 ! mesentery of small intestine [Term] id: UBERON:0006360 name: intermolar eminence namespace: uberon xref: EMAPA:18273 xref: EMAPA:18876 xref: MA:0001590 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006364 name: ureteric tip namespace: uberon xref: EMAPA:27605 xref: EMAPA:27625 xref: EMAPA:27694 xref: EMAPA:27749 xref: MA:0002601 is_a: UBERON:0001232 ! collecting duct of renal tubule [Term] id: UBERON:0006373 name: perihilar interstitium namespace: uberon xref: EMAPA:28083 xref: MA:0002618 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0005215 ! kidney interstitium [Term] id: UBERON:0006374 name: part of afferent arteriole forming the juxtaglomerular complex namespace: uberon synonym: "renin-producing cells" RELATED [MA:0002580] xref: EMAPA:28269 xref: MA:0002580 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus relationship: part_of UBERON:0004639 ! afferent arteriole [Term] id: UBERON:0006376 name: premacula segment of distal straight tubule namespace: uberon def: "." [PMID:14595018, https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376] synonym: "kidney medulla loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "medullary thick ascending limb of Henle's loop" EXACT [MA:th] synonym: "renal medulla loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "renal medulla thick ascending limb" EXACT [MA:th] xref: EMAPA:28331 xref: EMAPA:29683 xref: EMAPA:31379 xref: MA:0002628 is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0008408 ! distal tubular epithelium relationship: part_of UBERON:0001291 ! thick ascending limb of loop of Henle relationship: part_of UBERON:0006541 ! outer medulla inner stripe loop of henle relationship: part_of UBERON:0006542 ! outer medulla outer stripe loop of henle [Term] id: UBERON:0006377 name: remnant of Rathke's pouch namespace: uberon synonym: "hypophyseal cleft" RELATED [MA:0000857] xref: EMAPA:17518 xref: MA:0000857 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0006378 name: vibrissa namespace: uberon def: "specialized hairs (or, in certain bird species, specialized feathers) usually employed for tactile sensation. Vibrissae hair grow around the nostrils, above the lips, and on other parts of the face of most mammals, as well as on the forelegs and feet of some animals. Vibrissae are usually thicker and stiffer than other types of hair. Vibrissae consist of inert material and contain no nerves, but do have special sensory cells associated with them. Vibrissae are different from other hairs mainly because they are implanted in a special follicle sealed by a capsule of blood, called a blood sinus. Touching a vibrissa causes it to bend, and the blood in the sinus is pushed to one side or the other. The blood amplifies the movement and allows the mechanoreceptors at the base of the vibrissa to detect extremely small deflections[WP]." [Wikipedia:Whiskers, https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376] comment: Editor note: add distinct subclasses for whisker, hair of nose, etc. // Note that the FMA class should probably NOT be grouped here - fix in later release synonym: "hair of nose" NARROW [FMA:53670] synonym: "hair of vestibular part of nose" NARROW [FMA:53670] synonym: "nose hair" NARROW [FMA:53670] synonym: "whisker" NARROW [MA:0000163] xref: BTO:0003488 xref: EMAPA:17529 xref: FMA:53670 xref: MA:0000163 xref: MESH:A.13.950 xref: http://eulep.pdn.cam.ac.uk/~skinbase/Anatomic_hair_types/FOOT_VIBRISSAE_ANNOTATED.jpg is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0002416 ! integumental system property_value: "dubious_for_taxon" NCBITaxon:9606 [Term] id: UBERON:0006428 name: basisphenoid bone namespace: uberon def: "Endochondral ossification of the ventromedial portion of the braincase." [AAO:0000040] synonym: "basisphenoid" EXACT [AAO:0000040] xref: AAO:0000040 xref: EMAPA:18706 xref: MA:0001463 xref: SCTID:95945003 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0006430 name: xiphoid cartilage namespace: uberon subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "cartilage of xiphoid process" EXACT [FMA:32574] synonym: "ensiform cartilage" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphoid cartilage" EXACT [] synonym: "xiphoid process cartilage" EXACT [FMA:32574] xref: AAO:0000940 xref: EMAPA:18725 xref: FMA:32574 xref: MA:0001884 is_a: UBERON:0000398 ! sternal cartilage is_a: UBERON:0002236 ! costal cartilage [Term] id: UBERON:0006431 name: xiphoid process bone namespace: uberon synonym: "bone tissue of xiphoid process" EXACT [FMA:32577] synonym: "xiphoid bone" RELATED [Wikipedia:Xiphoid_process] xref: FMA:32577 xref: GAID:248 is_a: UBERON:0002481 ! bone tissue is_a: UBERON:0003837 ! thoracic segment connective tissue [Term] id: UBERON:0006435 name: os penis namespace: uberon def: "a bone found in the penis of most mammals. It is absent in humans, but present in other primates, such as the closely-related chimpanzee. The bone aids in sexual intercourse[WP]." [Wikipedia:Baculum] synonym: "baculum" EXACT [Wikipedia:Baculum] synonym: "penile bone" EXACT [Wikipedia:Baculum] synonym: "penis bone" EXACT [Wikipedia:Baculum] xref: EMAPA:29769 xref: MA:0000406 xref: SCTID:27962002 is_a: UBERON:0007719 ! os penis/os clitoris [Term] id: UBERON:0006436 name: principal artery to forelimb namespace: uberon xref: EMAPA:16811 xref: MA:0002024 is_a: UBERON:0007718 ! principal artery to limb [Term] id: UBERON:0006438 name: principal artery to hindlimb namespace: uberon xref: EMAPA:16812 xref: MA:0002025 is_a: UBERON:0007718 ! principal artery to limb [Term] id: UBERON:0006440 name: os clitoris namespace: uberon synonym: "baubellum" EXACT [Wikipedia:Baculum] synonym: "os clitoridis" EXACT [Wikipedia:Baculum] xref: EMAPA:30823 xref: MA:0000387 is_a: UBERON:0007719 ! os penis/os clitoris [Term] id: UBERON:0006442 name: hepatic recess namespace: uberon is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0006443 name: prinicipal vein of limb namespace: uberon is_a: UBERON:0001638 ! vein is_a: UBERON:0003514 ! limb blood vessel relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0006444 name: annulus fibrosus namespace: uberon def: "A ring of fibrous or fibrocartilaginous tissue (as of an intervertebral disk or surrounding an orifice of the heart)." [BTO:0003627] synonym: "anulus fibrosus" EXACT [FMA:76704] synonym: "fibrous ring" RELATED [BTO:0003627] xref: BTO:0003627 xref: FMA:76704 is_a: UBERON:0001995 ! fibrocartilage [Term] id: UBERON:0006445 name: caudal middle frontal gyrus namespace: uberon def: "Component of the middle frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1083] synonym: "caudal middle frontal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1083] synonym: "posterior part of middle frontal gyrus" EXACT [FMA:70688] xref: FMA:70688 xref: NIF_GrossAnatomy:birnlex_1083 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0002702 ! middle frontal gyrus [Term] id: UBERON:0006446 name: rostral middle frontal gyrus namespace: uberon def: "Component of the middle frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1090] synonym: "anterior part of middle frontal gyrus" EXACT [FMA:70687] synonym: "rostral middle frontal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1090] xref: FMA:70687 xref: NIF_GrossAnatomy:birnlex_1090 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0002702 ! middle frontal gyrus [Term] id: UBERON:0006447 name: fifth lumbar spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "L5 segment" EXACT [FMA:71191] synonym: "L5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1251] synonym: "fifth lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1251] xref: FMA:71191 xref: NIF_GrossAnatomy:birnlex_1251 xref: SCTID:278775008 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006448 name: first lumbar spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "L1 segment" EXACT [FMA:71187] synonym: "L1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1336] synonym: "first lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1336] xref: FMA:71187 xref: NIF_GrossAnatomy:birnlex_1336 xref: SCTID:278776009 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006449 name: third lumbar spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "L3 segment" EXACT [FMA:71189] synonym: "L3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1340] synonym: "third lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1340] xref: FMA:71189 xref: NIF_GrossAnatomy:birnlex_1340 xref: SCTID:278778005 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006450 name: second lumbar spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "L2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1345] synonym: "l2 segment" EXACT [FMA:71188] synonym: "second lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1345] xref: FMA:71188 xref: NIF_GrossAnatomy:birnlex_1345 xref: SCTID:278777000 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006451 name: fourth lumbar spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "L4 segment" EXACT [FMA:71190] synonym: "L4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1352] xref: FMA:71190 xref: NIF_GrossAnatomy:birnlex_1352 xref: SCTID:278779002 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006452 name: fourth thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T4 segment" EXACT [FMA:71170] synonym: "T4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1378] xref: FMA:71170 xref: NIF_GrossAnatomy:birnlex_1378 xref: SCTID:278766006 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006453 name: fifth thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1383] synonym: "fifth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1383] synonym: "t5 segment" EXACT [FMA:71171] xref: FMA:71171 xref: NIF_GrossAnatomy:birnlex_1383 xref: SCTID:278767002 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006454 name: sixth thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T6 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1387] synonym: "sixth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1387] synonym: "t6 segment" EXACT [FMA:71172] xref: FMA:71172 xref: NIF_GrossAnatomy:birnlex_1387 xref: SCTID:278768007 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006455 name: seventh thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T7 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1392] synonym: "seventh thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1392] synonym: "t7 segment" EXACT [FMA:71173] xref: FMA:71173 xref: NIF_GrossAnatomy:birnlex_1392 xref: SCTID:278769004 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006456 name: eighth thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T8 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1398] synonym: "eighth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1398] synonym: "t8 segment" EXACT [FMA:71174] xref: FMA:71174 xref: NIF_GrossAnatomy:birnlex_1398 xref: SCTID:278770003 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006457 name: first thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1452] synonym: "first thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1452] synonym: "t1 segment" EXACT [FMA:62421] xref: FMA:62421 xref: NIF_GrossAnatomy:birnlex_1452 xref: SCTID:278762008 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006458 name: second thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1454] synonym: "second thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1454] synonym: "t2 segment" EXACT [FMA:62422] xref: FMA:62422 xref: NIF_GrossAnatomy:birnlex_1454 xref: SCTID:278763003 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006459 name: third thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1458] synonym: "t3 segment" EXACT [FMA:71169] synonym: "third thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1458] xref: FMA:71169 xref: NIF_GrossAnatomy:birnlex_1458 xref: SCTID:278764009 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006460 name: first sacral spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "S1 segment" EXACT [FMA:256625] synonym: "S1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1532] synonym: "first sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1532] xref: FMA:256625 xref: NIF_GrossAnatomy:birnlex_1532 xref: SCTID:278780004 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006461 name: second sacral spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "S2 segment" EXACT [FMA:256627] synonym: "S2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1539] synonym: "second sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1539] xref: FMA:256627 xref: NIF_GrossAnatomy:birnlex_1539 xref: SCTID:278781000 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006462 name: third sacral spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "S3 segment" EXACT [FMA:256629] synonym: "S3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1544] synonym: "third sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1544] xref: FMA:256629 xref: NIF_GrossAnatomy:birnlex_1544 xref: SCTID:278782007 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006463 name: fourth sacral spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "S4 segment" EXACT [FMA:256631] synonym: "S4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1548] xref: FMA:256631 xref: NIF_GrossAnatomy:birnlex_1548 xref: SCTID:278783002 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006464 name: fifth sacral spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "S5 segment" EXACT [FMA:256633] synonym: "S5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1553] synonym: "fifth sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1553] xref: FMA:256633 xref: NIF_GrossAnatomy:birnlex_1553 xref: SCTID:278784008 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006465 name: ninth thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T9 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1584] synonym: "ninth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1584] synonym: "t9 segment" EXACT [FMA:71175] xref: FMA:71175 xref: NIF_GrossAnatomy:birnlex_1584 xref: SCTID:278771004 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006466 name: tenth thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T10 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1591] synonym: "t10 segment" EXACT [FMA:71176] synonym: "tenth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1591] xref: FMA:71176 xref: NIF_GrossAnatomy:birnlex_1591 xref: SCTID:278772006 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006467 name: eleventh thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T11 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1596] synonym: "eleventh thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1596] synonym: "t11 segment" EXACT [FMA:71177] xref: FMA:71177 xref: NIF_GrossAnatomy:birnlex_1596 xref: SCTID:278773001 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006468 name: twelfth thoracic spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "T12 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1598] synonym: "t12 segment" EXACT [FMA:71178] synonym: "twelfth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1598] xref: FMA:71178 xref: NIF_GrossAnatomy:birnlex_1598 xref: SCTID:278774007 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006469 name: first cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C1 segment" EXACT [FMA:71179] synonym: "C1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1694] synonym: "first cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1694] xref: FMA:71179 xref: NIF_GrossAnatomy:birnlex_1694 xref: SCTID:278754000 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006470 name: eighth cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C8 segment" EXACT [FMA:71186] synonym: "C8 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1696] synonym: "eighth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1696] xref: FMA:71186 xref: NIF_GrossAnatomy:birnlex_1696 xref: SCTID:278761001 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006471 name: brodmann (1909) area 5 namespace: uberon def: "Brodmann area 5 is one of Brodmann's cytologically defined regions of the brain. It is involved in somatosensory processing and association." [Wikipedia:Brodmann_area_5] synonym: "Area praeparietalis" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "B09-5" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "Brodmann area 5, preparietal" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "area 5 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "brodmann (1909) area 5" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "brodmann area 5" EXACT [FMA:68601] synonym: "preparietal area 5" EXACT [FMA:68601, Wikipedia:Brodmann_area_5] synonym: "secondary somatosensory cortex" RELATED [Wikipedia:Brodmann_area_5] xref: FMA:68601 xref: NIF_GrossAnatomy:birnlex_1736 xref: SCTID:384764008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006472 name: brodmann (1909) area 6 namespace: uberon def: "Brodmann area 6, or BA6, is part of the frontal cortex in the human brain. Situated just anterior to the primary motor cortex, it is composed of the premotor cortex and, medially, the supplementary motor area, or SMA. This large area of the frontal cortex is believed to play a role in the planning of complex, coordinated movements. Brodmann area 6 is also called agranular frontal area 6 in humans because it lacks an internal granular cortical layer (layer IV). It is a subdivision of the cytoarchitecturally defined precentral region of cerebral cortex. In the human brain, it is located on the portions of the precentral gyrus that are not occupied by the gigantopyramidal area 4; furthermore, BA6 extends onto the caudal portions of the superior frontal and middle frontal gyri. It extends from the cingulate sulcus on the medial aspect of the hemisphere to the lateral sulcus on the lateral aspect. It is bounded rostrally by the granular frontal region and caudally by the gigantopyramidal area 4 (Brodmann, 1909)." [Wikipedia:Brodmann_area_6] synonym: "Area frontalis agranularis" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "B09-6" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "Brodmann area 6, agranular frontal" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "agranular frontal area 6" EXACT [FMA:68602, Wikipedia:Brodmann_area_6] synonym: "area 6 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "area 6 of brodmann" EXACT [FMA:68602] synonym: "brodmann (1909) area 6" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "brodmann area 6" EXACT [FMA:68602] synonym: "frontal belt" EXACT [FMA:68602] xref: FMA:68602 xref: NIF_GrossAnatomy:birnlex_1737 xref: SCTID:384765009 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006473 name: brodmann (1909) area 18 namespace: uberon def: "." [NIF_GrossAnatomy:birnlex_1749] synonym: "Area parastriata" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "B09-18" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "Brodmann area 18, parastriate" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "area 18 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "area 18 of brodmann" EXACT [FMA:68615] synonym: "brodmann (1909) area 18" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "brodmann area 18" EXACT [FMA:68615] synonym: "brodmann's area 18" EXACT [FMA:68615] synonym: "parastriate area 18" EXACT [FMA:68615] synonym: "secondary visual area" EXACT [FMA:68615] synonym: "visual area ii" EXACT [FMA:68615] xref: FMA:68615 xref: NIF_GrossAnatomy:birnlex_1749 xref: SCTID:384773000 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006474 name: brodmann (1909) area 30 namespace: uberon synonym: "Area retrolimbica agranularis" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "B09-30" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "Brodmann area 30, agranular retrolimbic" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "agranular retrolimbic area 30" EXACT [FMA:68627] synonym: "area 30 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "area 30 of brodmann" EXACT [FMA:68627] synonym: "brodmann (1909) area 30" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "brodmann area 30" EXACT [FMA:68627] synonym: "brodmann's area 30" EXACT [FMA:68627] xref: FMA:68627 xref: NIF_GrossAnatomy:birnlex_1764 xref: SCTID:384784007 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006475 name: brodmann (1909) area 31 namespace: uberon synonym: "Area cingularis posterior dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "B09-31" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "Brodmann area 31, dorsal posterior cingulate" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "area 31 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "area 31 of brodmann" EXACT [FMA:68628] synonym: "brodmann (1909) area 31" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "brodmann area 31" EXACT [FMA:68628] synonym: "brodmann's area 31" EXACT [FMA:68628] synonym: "cinguloparietal transition area" EXACT [FMA:68628] synonym: "dorsal posterior cingulate area 31" EXACT [FMA:68628] xref: FMA:68628 xref: NIF_GrossAnatomy:birnlex_1765 xref: SCTID:384785008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006476 name: brodmann (1909) area 33 namespace: uberon synonym: "Area praegenualis" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "B09-33" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "Brodmann area 33, pregenual" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "area 33 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "area 33 of brodmann" EXACT [FMA:68630] synonym: "brodmann (1909) area 33" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "brodmann area 33" EXACT [FMA:68630] synonym: "brodmann's area 33" EXACT [FMA:68630] synonym: "pregenual area 33" EXACT [FMA:68630] xref: FMA:68630 xref: NIF_GrossAnatomy:birnlex_1766 xref: SCTID:384788005 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006477 name: brodmann (1909) area 34 namespace: uberon synonym: "Area entorhinalis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "B09-34" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "Brodmann area 34, dorsal entorhinal" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "area 34 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "area 34 of brodmann" EXACT [FMA:68631] synonym: "brodmann (1909) area 34" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "brodmann area 34" EXACT [FMA:68631] synonym: "dorsal entorhinal area 34" EXACT [FMA:68631] xref: FMA:68631 xref: NIF_GrossAnatomy:birnlex_1767 xref: SCTID:384789002 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006478 name: brodmann (1909) area 37 namespace: uberon synonym: "Area occipitotemporalis" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "B09-37" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "Brodmann area 37, occipitotemporal" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "area 37 0f brodmann" EXACT [FMA:68634] synonym: "area 37 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "brodmann (1909) area 37" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "brodmann area 37" EXACT [FMA:68634] synonym: "occipitotemporal area 37" EXACT [FMA:68634] xref: FMA:68634 xref: NIF_GrossAnatomy:birnlex_1770 xref: SCTID:384792003 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006479 name: brodmann (1909) area 38 namespace: uberon synonym: "Area temporopolaris" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "B09-38" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "Brodmann area 38, temporopolar" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "area 38 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "area 38 of brodmann" EXACT [FMA:68635] synonym: "brodmann (1909) area 38" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "brodmann area 38" EXACT [FMA:68635] synonym: "temporopolar area 38" EXACT [FMA:68635] xref: FMA:68635 xref: NIF_GrossAnatomy:birnlex_1771 xref: SCTID:384793008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006480 name: brodmann (1909) area 39 namespace: uberon synonym: "Area angularis" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "B09-39" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "Brodmann area 39, angular" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "angular area 39" EXACT [FMA:68636] synonym: "area 39 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "area 39 of brodmann" EXACT [FMA:68636] synonym: "brodmann (1909) area 39" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "brodmann area 39" EXACT [FMA:68636] xref: FMA:68636 xref: NIF_GrossAnatomy:birnlex_1772 xref: SCTID:384794002 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006481 name: brodmann (1909) area 44 namespace: uberon synonym: "Area opercularis" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "B09-44" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "Brodmann area 44, opercular" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "area 44 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "area 44 of brodmann" EXACT [FMA:68641] synonym: "brodmann (1909) area 44" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "brodmann area 44" EXACT [FMA:68641] synonym: "opercular area 44" EXACT [FMA:68641] xref: FMA:68641 xref: NIF_GrossAnatomy:birnlex_1776 xref: SCTID:384803008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006482 name: brodmann (1909) area 45 namespace: uberon synonym: "Area triangularis" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "B09-45" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "Brodmann area 45, triangular" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "area 45 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "area 45 of brodmann" EXACT [FMA:68642] synonym: "brodmann (1909) area 45" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "brodmann area 45" EXACT [FMA:68642] synonym: "triangular area 45" EXACT [FMA:68642] xref: FMA:68642 xref: NIF_GrossAnatomy:birnlex_1777 xref: SCTID:384805001 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006483 name: brodmann (1909) area 46 namespace: uberon def: "Brodmann area 46, or BA46, is part of the frontal cortex in the human brain. It is between BA10 and BA45. BA46 is known as middle frontal area 46. In the human it occupies approximately the middle third of the middle frontal gyrus and the most rostral portion of the inferior frontal gyrus. Brodmann area 46 roughly corresponds with the dorsolateral prefrontal cortex (DLPFC), although the borders of area 46 are based on cytoarchitecture rather than function. The DLPFC also encompasses part of granular frontal area 9, directly adjacent on the dorsal surface of the cortex. Cytoarchitecturally, BA46 is bounded dorsally by the granular frontal area 9, rostroventrally by the frontopolar area 10 and caudally by the triangular area 45 (Brodmann-1909). There is some discrepancy between the extent of BA8 (Brodmann-1905) and the same area as described by Walker (1940)" [Wikipedia:Brodmann_area_46] synonym: "Area frontalis media" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "B09-46" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "Brodmann area 46, middle frontal" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "area 46 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "area 46 of brodmann" EXACT [FMA:68643] synonym: "brodmann (1909) area 46" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "brodmann area 46" EXACT [FMA:68643] synonym: "middle frontal area 46" EXACT [FMA:68643, Wikipedia:Brodmann_area_46] xref: FMA:68643 xref: NIF_GrossAnatomy:birnlex_1778 xref: SCTID:384806000 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006484 name: brodmann (1909) area 47 namespace: uberon synonym: "Area orbitalis" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "B09-47" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "Brodmann area 47, orbital" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "area 47 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "area 47 of brodmann" EXACT [FMA:68644] synonym: "brodmann (1909) area 47" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "brodmann area 47" EXACT [FMA:68644] synonym: "orbital area 47" EXACT [FMA:68644] xref: FMA:68644 xref: NIF_GrossAnatomy:birnlex_1779 xref: SCTID:384807009 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006485 name: brodmann (1909) area 48 namespace: uberon synonym: "Area retrosubicularis" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "B09-48" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "Brodmann area 48, retrosubicular" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "area 48 of brodmann" EXACT [FMA:81151] synonym: "brodmann (1909) area 48" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "brodmann area 48" EXACT [FMA:81151] synonym: "brodmann's area 48" EXACT [FMA:81151] synonym: "retrosubicular area 48" EXACT [FMA:81151] xref: FMA:81151 xref: NIF_GrossAnatomy:birnlex_1791 xref: SCTID:384808004 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0006486 name: brodmann (1909) area 52 namespace: uberon synonym: "Area parainsularis" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "B09-52" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "Brodmann area 52, parainsular" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "area 52 of brodmann" EXACT [FMA:81153] synonym: "brodmann (1909) area 52" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "brodmann area 52" EXACT [FMA:81153] synonym: "parainsular area 52" EXACT [FMA:81153] xref: FMA:81153 xref: NIF_GrossAnatomy:birnlex_1792 xref: SCTID:384809007 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0006487 name: hadjikhani et al. (1998) visuotopic area v2d namespace: uberon synonym: "hadjikhani et al. (1998) visuotopic area v2d" EXACT [NIF_GrossAnatomy:birnlex_4055] xref: NIF_GrossAnatomy:birnlex_4055 is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0006488 name: third cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C3 segment" EXACT [FMA:71181] synonym: "C3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_744] synonym: "third cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_744] xref: FMA:71181 xref: NIF_GrossAnatomy:birnlex_744 xref: SCTID:278756003 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006489 name: second cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C2 segment" EXACT [FMA:71180] synonym: "C2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_752] synonym: "second cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_752] xref: FMA:71180 xref: NIF_GrossAnatomy:birnlex_752 xref: SCTID:278755004 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006490 name: fourth cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C4 segment" EXACT [FMA:71182] synonym: "C4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_753] synonym: "forth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_753] xref: FMA:71182 xref: NIF_GrossAnatomy:birnlex_753 xref: SCTID:278757007 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006491 name: fifth cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C5 segment" EXACT [FMA:71183] synonym: "C5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_760] synonym: "fifth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_760] xref: FMA:71183 xref: NIF_GrossAnatomy:birnlex_760 xref: SCTID:278758002 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006492 name: sixth cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C6 segment" EXACT [FMA:71184] synonym: "C6 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_766] synonym: "sixth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_766] xref: FMA:71184 xref: NIF_GrossAnatomy:birnlex_766 xref: SCTID:278759005 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006493 name: seventh cervical spinal cord segment namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "C7 segment" EXACT [FMA:71185] synonym: "C7 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_773] synonym: "seventh cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_773] xref: FMA:71185 xref: NIF_GrossAnatomy:birnlex_773 xref: SCTID:278760000 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006494 name: apex of arytenoid namespace: uberon synonym: "apex of arytenoid cartilage" EXACT [FMA:55348] synonym: "arytenoid cartilage apex" EXACT [FMA:55348] xref: FMA:55348 xref: MA:0001760 xref: SCTID:279534007 is_a: UBERON:0001996 ! elastic cartilage is_a: UBERON:0003406 ! cartilage of respiratory system is_a: UBERON:0003572 ! chest connective tissue is_a: UBERON:0003583 ! larynx connective tissue is_a: UBERON:0004267 ! back connective tissue relationship: part_of UBERON:0001740 ! arytenoid cartilage [Term] id: UBERON:0006495 name: osseus cochlear canal namespace: uberon synonym: "osseous cochlear canal" EXACT [FMA:75666] xref: FMA:75666 xref: MA:0001183 is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0007223 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! osseus cochlea [Term] id: UBERON:0006496 name: external acoustic meatus osseus part namespace: uberon synonym: "osseous external acoustic tube" EXACT [FMA:61290] synonym: "osseous part of external acoustic meatus" EXACT [FMA:61290] xref: FMA:61290 xref: MA:0001235 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0006497 name: foot interosseus muscle namespace: uberon synonym: "foot interosseous" EXACT [FMA:37456] synonym: "interosseous of foot" EXACT [FMA:37456] xref: FMA:37456 xref: MA:0002302 xref: SCTID:181714004 xref: ncithesaurus:Foot_Interosseous_Muscle is_a: UBERON:0001498 ! muscle of foot is_a: UBERON:0006508 ! interosseus muscle [Term] id: UBERON:0006499 name: dorsal foot interosseus muscle namespace: uberon synonym: "dorsal interosseous of foot" EXACT [FMA:37457] xref: FMA:37457 xref: MA:0002303 xref: ncithesaurus:Dorsal_Foot_Interosseous_Muscle is_a: UBERON:0006497 ! foot interosseus muscle [Term] id: UBERON:0006502 name: plantar foot interosseus muscle namespace: uberon synonym: "plantar interosseous of foot" EXACT [FMA:37458] xref: FMA:37458 xref: MA:0002304 xref: ncithesaurus:Plantar_Foot_Interosseus_Muscle is_a: UBERON:0006497 ! foot interosseus muscle [Term] id: UBERON:0006505 name: palmar hand interosseus muscle namespace: uberon synonym: "palmar interosseous of hand" EXACT [FMA:37419] xref: FMA:37419 xref: MA:0002315 xref: ncithesaurus:Palmar_Hand_Interosseus_Muscle is_a: UBERON:0001502 ! interosseous muscle of hand [Term] id: UBERON:0006508 name: interosseus muscle namespace: uberon is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003661 ! limb muscle relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006514 name: pallidum namespace: uberon def: "Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614] synonym: "neuraxis pallidum" EXACT [FMA:83684] synonym: "pallidum of neuraxis" EXACT [FMA:83684] xref: ABA:PAL xref: FMA:83684 xref: MA:0000889 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0002420 ! basal ganglion property_value: "spatially_disjoint_from" UBERON:0002435 [Term] id: UBERON:0006516 name: dorsal pallidum namespace: uberon synonym: "dorsal globus pallidus" RELATED [BTO:0004376] xref: ABA:PALd xref: BTO:0004376 xref: FMA:77619 is_a: UBERON:0006514 ! pallidum relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0006517 name: kidney calyx namespace: uberon def: "Recesses of the kidney pelvis which divides into two wide, cup-shaped major renal calices, with each major calix subdivided into 7 to 14 minor calices. Urine empties into a minor calix from collecting tubules, then passes through the major calix, renal pelvis, and ureter to enter the urinary bladder. (From Moore, Clinically Oriented Anatomy, 3d ed, p211)" [MESH:A.05.810.453.537.503] synonym: "calyx" BROAD [EMAPA:18676] synonym: "renal calyx" RELATED [MA:0000369] xref: EMAPA:18676 xref: GAID:427 xref: MA:0000369 xref: MESH:A.05.810.453.537.503 xref: ncithesaurus:Renal_Calyx is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001224 ! renal pelvis [Term] id: UBERON:0006518 name: right lung lobe namespace: uberon synonym: "lobe of the right lung" EXACT [ncithesaurus:Lobe_of_the_Right_Lung] xref: MA:0001791 xref: SCTID:272654004 xref: ncithesaurus:Lobe_of_the_Right_Lung is_a: UBERON:0000101 ! lobe of lung [Term] id: UBERON:0006524 name: alveolar system namespace: uberon def: "System pertaining to a bronchus and alveoli." [BTO:0000136] synonym: "bronchoalveolar system" RELATED [BTO:0000136] synonym: "pulmonary alveolar system" EXACT [MP:0010899] xref: BTO:0000136 xref: EMAPA:19001 xref: EMAPA:19003 xref: EMAPA:19005 xref: EMAPA:19007 xref: EMAPA:19009 xref: MA:0000416 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0006525 name: left lung alveolar system namespace: uberon xref: MA:0001775 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0006526 name: right lung alveolar system namespace: uberon xref: MA:0001784 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0006530 name: seminal fluid namespace: uberon def: "The fluid portion of the semen, in which the spermatozoa are suspended[BTO]." [BTO:0001232] comment: Usage notes: we follow FMA and make this class a generic superclass of the secretions of different glands (prostate, bulbo-urethreal, seminal vesicle). MA (and ncit) follows a mixture model, where these secretions are part of the seminal fluid // Taxon notes: This term covers a variety of species. Example: In D. melanogaster, seminal fluid proteins affect female receptivity, ovulation, oogenesis, sperm storage, sperm competition and mating plug formation [doi:10.1046/j.1365-2540.2001.00961.x]. Note that ths intology contains a number of subtypes of seminal fluid, defined according to glands (which are more taxonomically restricted) synonym: "male genital fluid" RELATED [] synonym: "male genital secretion" RELATED [] synonym: "seminal fluid" RELATED [BTO:0001232] synonym: "seminal plasma" EXACT [BTO:0001232] xref: BTO:0001232 xref: FMA:62967 xref: MA:0002523 xref: MAT:0000057 xref: MIAA:0000057 is_a: UBERON:0000456 ! bodily secretion relationship: part_of UBERON:0001968 ! semen [Term] id: UBERON:0006531 name: oculomotor muscle namespace: uberon def: "The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris." [MESH:A.02.633.567.700] comment: we follow MA in making this a subckass of extra-ocular muscle but the distinction is not clear xref: MA:0002432 xref: MESH:A.02.633.567.700 xref: ncithesaurus:Oculomotor_Muscle is_a: UBERON:0001601 ! extra-ocular muscle [Term] id: UBERON:0006532 name: oblique extraocular muscle namespace: uberon xref: MA:0001275 is_a: UBERON:0006531 ! oculomotor muscle [Term] id: UBERON:0006533 name: rectus extraocular muscle namespace: uberon xref: MA:0001278 is_a: UBERON:0006531 ! oculomotor muscle [Term] id: UBERON:0006534 name: renal convoluted tubule namespace: uberon synonym: "convoluted tubule" EXACT [] xref: MA:0001665 xref: SCTID:361333002 xref: ncithesaurus:Convoluted_Tubule is_a: UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0006535 name: skin fluid/secretion namespace: uberon synonym: "skin fluid" RELATED [] synonym: "skin secretion" RELATED [] xref: MA:0002537 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006536 name: male reproductive system fluid/secretion namespace: uberon synonym: "male reproductive system fluid" RELATED [] synonym: "male reproductive system secretion" RELATED [] xref: MA:0002521 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006537 name: female reproductive system fluid/secretion namespace: uberon synonym: "female reproductive system fluid" RELATED [] synonym: "female reproductive system secretion" RELATED [] xref: MA:0002510 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006538 name: respiratory system fluid/secretion namespace: uberon synonym: "respiratory system fluid" RELATED [] synonym: "respiratory system secretion" RELATED [] xref: MA:0002533 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006539 name: mammary gland fluid/secretion namespace: uberon synonym: "lactiferous gland fluid" RELATED [] synonym: "lactiferous gland secretion" RELATED [] synonym: "mammary gland fluid" RELATED [] synonym: "mammary gland secretion" RELATED [] synonym: "secretion of mammary gland" RELATED [] xref: MA:0002505 is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0006541 name: outer medulla inner stripe loop of henle namespace: uberon xref: EMAPA:29679 xref: MA:0002627 is_a: UBERON:0001288 ! loop of Henle [Term] id: UBERON:0006542 name: outer medulla outer stripe loop of henle namespace: uberon xref: EMAPA:29665 xref: MA:0002630 is_a: UBERON:0001288 ! loop of Henle [Term] id: UBERON:0006544 name: kidney vasculature namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: EMAPA:28457 xref: ZFA:0005305 is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0006876 ! vasculature of organ relationship: part_of UBERON:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesonephros [Term] id: UBERON:0006553 name: renal duct namespace: uberon def: "A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9] comment: in ZFA this is defined as part of mesonephros xref: ZFA:0005289 is_a: UBERON:0000058 ! duct is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesonephros [Term] id: UBERON:0006554 name: urinary system structure namespace: uberon comment: editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning xref: SCTID:122489005 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0006555 name: excretory tube namespace: uberon is_a: UBERON:0000025 ! tube is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0006558 name: lymphatic part of lymphoid system namespace: uberon synonym: "lymphatic system" EXACT [FMA:7162, MA:0002435] synonym: "lymphatic tree system" EXACT [FMA:7162] xref: AAO:0010522 xref: EFO:0000870 xref: EMAPA:18248 xref: FMA:7162 xref: MA:0002961 xref: MESH:A.15.382.520 xref: SCTID:362597000 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002465 ! lymphoid system relationship: part_of UBERON:0004535 ! cardiovascular system relationship: part_of UBERON:0007798 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! vascular system [Term] id: UBERON:0006561 name: non-lymphatic part of lymphoid system namespace: uberon synonym: "non-lymphatic lymphoid system" EXACT [FMA:74623] xref: FMA:74623 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0006562 name: pharynx namespace: uberon def: "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465] comment: Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms xref: AAO:0000967 xref: FBbt:00005380 xref: MAT:0000049 xref: MIAA:0000049 xref: SCTID:181211006 xref: WBbt:0003681 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001041 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! foregut [Term] id: UBERON:0006563 name: tunica media of pulmonary trunk namespace: uberon def: "Tunica media of artery which is continuous with the myocardium of right ventricle.[FMA]" [FMA:85030, FMA:FMA] xref: FMA:85030 is_a: UBERON:0002522 ! tunica media [Term] id: UBERON:0006564 name: superficial palmar arch namespace: uberon synonym: "Superficial palmar arch" EXACT [FMA:22834] synonym: "arcus palmaris superficialis" EXACT [FMA:22834, FMA:TA] synonym: "superficial palmar arterial arch" EXACT [FMA:22834] xref: FMA:22834 xref: MA:0002127 xref: SCTID:362051006 xref: ncithesaurus:Superficial_Palmar_Arch is_a: UBERON:0004563 ! forelimb digital vein [Term] id: UBERON:0006565 name: female urethral meatus namespace: uberon synonym: "External urethral orifice (female)" EXACT [FMA:85266] synonym: "external orifice of female urethra" EXACT [FMA:85266] synonym: "female urethral meatus" EXACT [FMA:85266] synonym: "ostium urethrae externum (urethra feminina)" EXACT [FMA:85266, FMA:TA] xref: FMA:85266 xref: MA:0002639 xref: SCTID:279479008 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000161 ! orifice is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001334 ! female urethra [Term] id: UBERON:0006566 name: left ventricle myocardium namespace: uberon def: "Myocardium of ventricle which is continuous with the tunica media of aorta.[FMA]" [FMA:9558, FMA:FMA] synonym: "Left ventricular myocardium" EXACT [FMA:9558] synonym: "myocardium of left ventricle" EXACT [FMA:9558] xref: FMA:9558 xref: MA:0002983 xref: SCTID:362021000 is_a: UBERON:0001083 ! myocardium of ventricle [Term] id: UBERON:0006567 name: right ventricle myocardium namespace: uberon def: "Myocardium of ventricle which is continuous with the tunica media of the pulmonary trunk.[FMA]" [FMA:9535, FMA:FMA] synonym: "Right ventricular myocardium" EXACT [FMA:9535] synonym: "myocardium of right ventricle" EXACT [FMA:9535] xref: FMA:9535 xref: MA:0002984 xref: SCTID:362020004 is_a: UBERON:0001083 ! myocardium of ventricle [Term] id: UBERON:0006568 name: hypothalamic nucleus namespace: uberon synonym: "nucleus of hypothalamus" EXACT [FMA:258762] xref: BTO:0002449 xref: FMA:258762 xref: MA:0002426 xref: SCTID:279304003 is_a: UBERON:0003048 ! regional part of hypothalamus is_a: UBERON:0006569 ! diencephalic nucleus [Term] id: UBERON:0006569 name: diencephalic nucleus namespace: uberon xref: ZFA:0001659 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! regional part of diencephalon [Term] id: UBERON:0006570 name: trabecula carnea of right ventricle namespace: uberon synonym: "trabeculae carneae (ventriculus dexter)" EXACT [FMA:7270] xref: FMA:7270 xref: SCTID:192373001 is_a: UBERON:0002511 ! trabecula carnea [Term] id: UBERON:0006571 name: trabecula carnea of left ventricle namespace: uberon synonym: "trabeculae carneae (ventriculus sinister)" EXACT [FMA:7271] xref: FMA:7271 xref: SCTID:190344008 is_a: UBERON:0002511 ! trabecula carnea [Term] id: UBERON:0006574 name: pectinate line namespace: uberon def: "The pectinate line (anocutaneous line, dentate line, anorectal junction) is a line which divides the upper 2/3rds and lower 1/3rd of the anal canal. Developmentally, this line represents the hindgut-proctodeum junction. It is an important anatomical landmark, and several distinctions can be made based upon the location of a structure relative to this line:" [Wikipedia:Pectinate_line] comment: FMA also has FMA:29321 but it's not clear how this differs synonym: "Hilton's 'white line'" RELATED [EMAPA:19159] synonym: "dentate line" RELATED [Wikipedia:Pectinate_line] synonym: "pectinate line of anal canal" EXACT [FMA:75383] synonym: "recto-anal junction" RELATED [Wikipedia:Pectinate_line] synonym: "site of anal membrane" RELATED [EMAPA:19159] xref: EMAPA:19159 xref: FMA:75383 xref: SCTID:245445008 xref: Wikipedia:Pectinate_line xref: ncithesaurus:Pectinate_Line is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0006575 name: mantle namespace: uberon def: "A fold or lobe or pair of lobes of the body wall of a mollusk or brachiopod that in shell-bearing forms lines the shell and bears shell-secreting glands." [BTO:0000825, Wipikedia:Mantle_(mollusc)] synonym: "mantle tissue" RELATED [BTO:0000825] synonym: "pallium" RELATED [Wipikedia:Mantle_(mollusc)] xref: BTO:0000825 is_a: UBERON:0000309 ! body wall [Term] id: UBERON:0006580 name: mantle cavity namespace: uberon def: "Within the shell is a fleshy layer of tissue called the mantle; there is a cavity (the mantle cavity) between the mantle and the body wall proper." [BTO:0000826] xref: BTO:0000826 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0006581 name: mantle muscle namespace: uberon xref: BTO:0000827 is_a: UBERON:0003896 ! muscle of body wall [Term] id: UBERON:0006582 name: statolith namespace: uberon def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP,CJM]." [UBERON:cjm] is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0006583 ! statocyst [Term] id: UBERON:0006583 name: statocyst namespace: uberon def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP]." [Wikipedia:Statocyst] comment: todo - add statolith organ subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0000062 ! organ [Term] id: UBERON:0006585 name: vestibular organ namespace: uberon synonym: "balance organ" EXACT [UBERON:cjm] xref: NIF_GrossAnatomy:birnlex_2519 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0006586 name: otolymph namespace: uberon xref: MA:0002527 xref: ncithesaurus:Otolymph is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0006587 name: ligamentum venosum namespace: uberon def: "The ligamentum venosum is the fibrous remnant of the ductus venosus of the fetal circulation. Usually, it is attached to the left branch of the portal vein within the porta hepatis (gateway to the liver). It may be continuous with the round ligament of liver (ligamentum teres hepatis). It is invested by the peritoneal folds of the lesser omentum within a fissure on the inferior surface of the liver between the caudate and main parts of the left lobe." [Wikipedia:Ligamentum_venosum] synonym: "ligament of arantius" EXACT [FMA:14080] synonym: "ligamentum venosum (ductus venosus)" EXACT [FMA:14080] synonym: "ligamentum venosum of liver" EXACT [FMA:14080] synonym: "ligamentum venosus" EXACT [Wikipedia:Ligamentum_venosum] xref: FMA:14080 xref: SCTID:80391004 is_a: UBERON:0006592 ! transformed vein [Term] id: UBERON:0006588 name: round ligament of liver namespace: uberon def: "a degenerative string of tissue that exists in the free edge of the falciform ligament of the liver. Anatomically, the round ligament divides the left part of the liver into medial and lateral sections. The round ligament represents the remnant of the fetal left umbilical vein. The round ligament therefore only exists in mammals. Prenatally and for a month or two after birth, the left umbilical vein is patent, subsequently degenerating to fibrous tissue, the round ligament. The umbilical vein/round ligament inserts around the umbilicus and is an important landmark of the inner surface of the anterior abdominal wall[WP]." [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres" BROAD [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres hepatis" EXACT [FMA:14079, FMA:TA] synonym: "ligamentum teres hepatitis" EXACT [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres of liver" EXACT [FMA:14079] xref: FMA:14079 xref: SCTID:262209009 xref: ncithesaurus:Round_Ligament_of_the_Liver is_a: UBERON:0006592 ! transformed vein disjoint_from: UBERON:0006589 ! round ligament of uterus [Term] id: UBERON:0006589 name: round ligament of uterus namespace: uberon def: "The round ligament of the uterus originates at the uterine horns, in the parametrium. It leaves the pelvis via the deep inguinal ring, passes through the inguinal canal and continues on to the labia majora where its fibers spread and mix with the tissue of the mons pubis[WP]. A fibromuscular band that attaches to the uterus and then passes along the broad ligament, out through the inguinal ring, and into the labium majus[MESH]." [MESH:A.02.513.803, Wikipedia:Round_ligament_of_uterus] synonym: "Hunter's ligament" EXACT [FMA:20420] synonym: "ligamentum teres of uterus" EXACT [] synonym: "ligamentum teres uteri" EXACT [Wikipedia:Round_ligament_of_uterus] synonym: "round ligament" BROAD [GAID:130] synonym: "round ligament of the uterus" EXACT [Wikipedia:Round_ligament_of_uterus] xref: FMA:20420 xref: GAID:130 xref: SCTID:245495009 xref: ncithesaurus:Round_Ligament_of_the_Uterus is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0006590 name: vestigial embryonic structure namespace: uberon def: "Anatomical structure which is a remnant of an embryonic structure in the postnatal period. Examples: median umbilical ligament, paroohoron, prostatic utricle, ligamentum arteriosum.[FMA]" [FMA:16558, FMA:FMA] xref: FMA:16558 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0006591 name: transformed artery namespace: uberon xref: FMA:14076 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure [Term] id: UBERON:0006592 name: transformed vein namespace: uberon xref: FMA:14078 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure [Term] id: UBERON:0006594 name: chorda gubernaculum namespace: uberon def: "A portion of the gubernaculum testis and round ligament that develops in the body wall of the embryo." [Dorlands_Medical_Dictionary:MerckSource] xref: BTO:0002814 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006590 ! vestigial embryonic structure relationship: part_of UBERON:0004346 ! gubernaculum [Term] id: UBERON:0006595 name: presumptive endoderm namespace: uberon xref: AAO:0000471 xref: EFO:0003437 xref: ZFA:0000416 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006596 name: presumptive blood namespace: uberon xref: AAO:0000468 xref: EFO:0003439 xref: ZFA:0000568 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006597 name: quadrate namespace: uberon def: "The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei." [ZFA:0000621] comment: In snakes, the quadrate bone has become elongated and very mobile, and contributes greatly to their ability to swallow very large prey items. In mammals the articular and quadrate bones have migrated to the middle ear and are known as the malleus and incus. In fact, paleontologists regard this modification as the defining characteristic of mammalian hearing structures.[1] This migration was first described by Reichert in 1837. In pig embryos he discovered that the mandible ossifies on the side of Meckel's cartilage, while the posterior part of that cartilage is ossified and then detaches from the rest of the cartilage to enter the middle ear where it becomes the malleus synonym: "quadrate - incus" BROAD [VHOG:0000689] synonym: "quadrate bone" EXACT [AAO:0000525] xref: AAO:0000525 xref: EFO:0003547 xref: VHOG:0000689 xref: ZFA:0000621 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! viscerocranium bone relationship: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0003108 ! suspensorium property_value: "homologous_to" UBERON:0001688 [Term] id: UBERON:0006598 name: presumptive structure namespace: uberon synonym: "presumptive structures" EXACT [ZFA:0001116] xref: AAO:0000479 xref: ZFA:0001116 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006599 name: presumptive hypochord namespace: uberon xref: AAO:0000474 xref: EFO:0003453 xref: ZFA:0001217 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006600 name: presumptive enteric nervous system namespace: uberon xref: AAO:0000472 xref: EFO:0003462 xref: ZFA:0001334 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006601 name: presumptive ectoderm namespace: uberon def: "Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping." [ZFA:0001376] comment: note: AAO:0000473 synonym: "presumptive epidermis" RELATED [ZFA:0001376] xref: AAO:0000470 xref: EFO:0003466 xref: XAO:0004132 xref: ZFA:0001376 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! embryonic structure relationship: part_of UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ectoderm [Term] id: UBERON:0006603 name: presumptive mesoderm namespace: uberon xref: AAO:0000476 xref: EFO:0003467 xref: ZFA:0001377 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006604 name: lamina orbitonasalis namespace: uberon def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anterolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [ZFA:0001503] synonym: "laminas orbitonasalis" EXACT [ZFA:0001503] xref: AAO:0000262 xref: ZFA:0001503 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0006605 name: tectum synoticum namespace: uberon def: "Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium." [ZFA:0001506] xref: AAO:0000602 xref: AAO:0010129 xref: ZFA:0001506 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0006606 name: mandibular symphysis namespace: uberon def: "Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired[TAO]. The external surface of the mandible is marked in the median line by a faint ridge, indicating the symphysis menti, mandibular symphysis, or line of junction of the two pieces of which the bone is composed at an early period of life. This ridge divides below and encloses a triangular eminence, the mental protuberance, the base of which is depressed in the center but raised on either side to form the mental tubercle. It serves as the origin for the Geniohyoid and the Genioglossus[WP]" [Wikipedia:Symphysis_menti, ZFA:0005488] comment: todo - check subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "mental symphysis" RELATED [Wikipedia:Symphysis_menti] synonym: "symphysis menti" EXACT [MA:0001490] xref: AAO:0000277 xref: FMA:75779 xref: MA:0001490 xref: ZFA:0005488 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002213 ! cartilaginous joint relationship: part_of UBERON:0001684 ! mandible relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0006607 name: medial umbilical ligament namespace: uberon def: "The medial umbilical ligament is a paired structure found in human anatomy. It is on the deep surface of the anterior abdominal wall, and is covered by the medial umbilical folds." [Wikipedia:Medial_umbilical_ligament] synonym: "ligamentum umbilicale mediale" EXACT [FMA:14077] synonym: "medial umbilical fold" RELATED [Wikipedia:Medial_umbilical_ligament] synonym: "medial umbilical ligaments" RELATED [Wikipedia:Medial_umbilical_ligament] xref: FMA:14077 is_a: UBERON:0006591 ! transformed artery [Term] id: UBERON:0006608 name: corpus cavernosum clitoridis namespace: uberon def: "The corpus cavernosum clitoridis is one of a pair of sponge-like regions of erectile tissue which contain most of the blood in the clitoris during clitoral erection. This is homologous to the corpus cavernosum penis in the male; the body of the clitoris contains erectile tissue in a pair of corpora cavernosa (literally \"cave-like bodies\"), with a recognisably similar structure." [Wikipedia:Corpus_cavernosum_of_clitoris] synonym: "cavernous body of clitoris" RELATED [BTO:0002018] synonym: "clitoral corpus cavernosum" RELATED [BTO:0002018] synonym: "corpus cavernosum" RELATED [BTO:0002018] xref: BTO:0002018 xref: FMA:20172 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006609 ! corpus cavernosum [Term] id: UBERON:0006609 name: corpus cavernosum namespace: uberon xref: SCTID:245468004 is_a: UBERON:0008324 ! erectile tissue [Term] id: UBERON:0006610 name: tunica albuginea namespace: uberon def: "White covering over one of: penis, testicles or ovaries." [Wikipedia:Tunica_albuginea] xref: ncithesaurus:Tunica_Albuginea is_a: UBERON:0000158 ! membranous layer [Term] id: UBERON:0006611 name: exoskeleton namespace: uberon def: "Exoskeleton or shell, including those of mollusks, turtles, insects and crustaceans." [Wikipedia:Exoskeleton] comment: Editors note: consider adding a separate class for dermal skeleton. See also xref: XAO:0004025 synonym: "shell" RELATED [BTO:0004659] xref: BTO:0004659 is_a: UBERON:0002199 ! integument [Term] id: UBERON:0006612 name: shell namespace: uberon comment: ncit: A rigid covering that envelops an object subset: grouping_class ! Subset consisting of classes creating for grouping purposes xref: ncithesaurus:Shell is_a: UBERON:0006611 ! exoskeleton [Term] id: UBERON:0006614 name: aponeurosis namespace: uberon def: "Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon." [Wikipedia:Aponeurosis] synonym: "aponeuroses" RELATED PLURAL [Wikipedia:Aponeurosis] synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis] xref: AEO:0000092 xref: EHDAA2:0003092 xref: FMA:9722 xref: SCTID:331712004 xref: ncithesaurus:Aponeurosis is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001630 ! muscle organ [Term] id: UBERON:0006615 name: venous sinus namespace: uberon def: "a large vein or channel for the circulation of venous blood" [http://medical-dictionary.thefreedictionary.com/venous+sinus] comment: todo - add subclasses xref: EMAPA:18633 xref: MA:0000070 xref: SCTID:341586007 xref: ncithesaurus:Venous_Sinus is_a: UBERON:0003920 ! venous blood vessel [Term] id: UBERON:0006616 name: right external ear namespace: uberon synonym: "right auricular region" BROAD [FMA:53643] xref: FMA:53643 xref: SCTID:368567003 is_a: UBERON:0001691 ! external ear [Term] id: UBERON:0006617 name: left external ear namespace: uberon synonym: "left auricular region" BROAD [FMA:53644] xref: FMA:53644 xref: SCTID:368589004 is_a: UBERON:0001691 ! external ear [Term] id: UBERON:0006618 name: atrium auricular region namespace: uberon def: "A small conical pouch projections located on the upper anterior portion of each atrium of the heart." [MP:0010489] synonym: "atrial auricle" EXACT [MP:0010489] synonym: "auricle of heart" EXACT [FMA:77110] synonym: "auricula atrii" EXACT [FMA:77110, FMA:TA] synonym: "heart atrium auriclular region" EXACT [MP:0010489] xref: FMA:77110 xref: MA:0002955 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0006630 name: left atrium auricular region namespace: uberon synonym: "left atrial appendage" RELATED [MA:0001869] synonym: "left auricle" EXACT [FMA:7219] synonym: "left auricular region" BROAD [EMAPA:16816] xref: EHDAA2:0000276 xref: EHDAA:5343 xref: EMAPA:16816 xref: FMA:7219 xref: MA:0001869 xref: VHOG:0001229 is_a: UBERON:0006618 ! atrium auricular region [Term] id: UBERON:0006631 name: right atrium auricular region namespace: uberon synonym: "right atrial appendage" RELATED [MA:0001870] synonym: "right auricle" EXACT [FMA:7218] synonym: "right auricular region" BROAD [EMAPA:16824] xref: EHDAA2:0000291 xref: EHDAA:5352 xref: EMAPA:16824 xref: FMA:7218 xref: MA:0001870 xref: VHOG:0001232 is_a: UBERON:0006618 ! atrium auricular region [Term] id: UBERON:0006632 name: musculo-phrenic artery namespace: uberon xref: EMAPA:19215 xref: FMA:10645 xref: SCTID:244242003 is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0002456 ! internal thoracic artery [Term] id: UBERON:0006633 name: coracoid process namespace: uberon def: "The coracoid process is a small hook-like structure on the lateral edge of the superior anterior portion of the scapula. Pointing laterally forward, it, together with the acromion, serves to stabilize the shoulder joint. It is palpable in the deltopectoral groove between the deltoid and pectoralis major muscles. It is the site of attachment for several structures: * The pectoralis minor muscle - to 3rd to 5th ribs. * The short head of biceps brachii muscle - to Radial tuberosity. * The coracobrachialis muscle - to medial humerus. * The coracoclavicular ligament - to the clavicle. (The ligament is formed by the conoid ligament and trapezoid ligament.) * The coracoacromial ligament - to the acromion[WP]." [Wikipedia:Coracoid_process] synonym: "coracoid process of the scapula" RELATED [Wikipedia:Coracoid_process] xref: EMAPA:25121 xref: FMA:13455 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0006634 name: lingual vein namespace: uberon def: "The lingual veins begin on the dorsum, sides, and under surface of the tongue, and, passing backward along the course of the lingual artery, end in the internal jugular vein. The vena comitans of the hypoglossal nerve (ranine vein), a branch of considerable size, begins below the tip of the tongue, and may join the lingual; generally, however, it passes backward on the Hyoglossus, and joins the common facial." [Wikipedia:Lingual_veins] synonym: "deep lingual veins" RELATED [Wikipedia:Lingual_veins] synonym: "lingual vein" RELATED [Wikipedia:Lingual_veins] synonym: "ranine" RELATED [Wikipedia:Lingual_veins] synonym: "ranine vein" RELATED [Wikipedia:Lingual_veins] xref: AAO:0010514 xref: EMAPA:19312 xref: FMA:14326 xref: SCTID:181375007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006635 name: anterior abdominal wall namespace: uberon xref: EHDAA:5976 xref: EMAPA:17744 xref: FMA:14627 xref: SCTID:362696003 xref: VHOG:0000764 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0003697 ! abdominal wall [Term] id: UBERON:0006636 name: lumbar artery namespace: uberon def: "The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries." [Wikipedia:Lumbar_arteries] synonym: "Lumbar arterial tree" EXACT [FMA:14735] synonym: "arteria lumbalis" RELATED [Wikipedia:Lumbar_arteries] synonym: "lumbar artery" RELATED [Wikipedia:Lumbar_arteries] xref: EMAPA:19096 xref: FMA:14735 xref: SCTID:244285007 xref: ncithesaurus:Lumbar_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006637 name: coeliac trunk namespace: uberon def: "The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta." [Wikipedia:Celiac_artery] synonym: "Haller's tripus" EXACT [FMA:14812] synonym: "arteria celiaca" RELATED [Wikipedia:Celiac_artery] synonym: "celiac axis" RELATED [Wikipedia:Celiac_artery] synonym: "celiac trunk" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac axis" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunck" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunk" EXACT [FMA:14812, Wikipedia:Celiac_artery] synonym: "coeliaco-mesenteric trunk" EXACT [FMA:14812] synonym: "truncus coeliacus" RELATED [Wikipedia:Celiac_artery] xref: EHDAA2:0004519 xref: EMAPA:19212 xref: FMA:14812 xref: galen:CeliacTrunk is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001640 ! celiac artery [Term] id: UBERON:0006638 name: median umbilical ligament namespace: uberon def: "The median umbilical ligament is a structure in human anatomy. It is a shrivelled piece of tissue that represents the remnant of the embryonic urachus. It extends from the apex of the bladder to the umbilicus, on the deep surface of the anterior abdominal wall. It is unpaired. It is covered by the median umbilical fold Lateral to this structure are the medial umbilical ligament (which is a different structure, not to be confused) and the lateral umbilical ligament." [Wikipedia:Median_umbilical_ligament] synonym: "median umbilical fold" RELATED [Wikipedia:Median_umbilical_ligament] synonym: "middle umbilical ligament" RELATED [Wikipedia:Median_umbilical_ligament] xref: EMAPA:29637 xref: FMA:16568 xref: SCTID:89583000 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0006639 name: crus penis namespace: uberon def: "For their anterior three-fourths the corpora cavernosa penis lie in intimate apposition with one another, but behind they diverge in the form of two tapering processes, known as the crura, which are firmly connected to the ischial rami. Traced from behind forward, each crus begins by a blunt-pointed process in front of the tuberosity of the ischium, along the perineal surface of the conjoined (ischiopubic) ramus. Just before it meets its fellow it presents a slight enlargement, named by Georg Ludwig Kobelt (1804-1857) the bulb of the corpus cavernosum penis. Beyond this point the crus undergoes a constriction and merges into the corpus cavernosum proper, which retains a uniform diameter to its anterior end." [Wikipedia:Crus_of_penis] synonym: "Crus of penis" EXACT [FMA:18248] synonym: "crura of penis" RELATED [Wikipedia:Crus_of_penis] xref: EMAPA:19294 xref: FMA:18248 xref: SCTID:362270006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0004713 ! corpus cavernosum penis [Term] id: UBERON:0006640 name: crus of clitoris namespace: uberon def: "The clitoral crura are an internal portion of the clitoris. A single one is called a clitoral crus. They are shaped like an inverted \"V\" with the vertex of the \"V\" connecting to the clitoral body. They are near the vestibular bulbs, also known as the clitoral bulbs. They are to the left and right of the urethra, urethral sponge, and vagina and extend back toward the pubic bone. The clitoral crura contain muscles called the ischiocavernosi. \"Crus\" basically translates as \"leg\", thus \"crura\" as \"legs\". Each clitoral crus connects to the rami of the pubis and the ischium. The crura, like the rest of the clitoris, are composed of two corpus cavernosa muscles, which are made up of erectile tissue." [Wikipedia:Clitoral_crura] synonym: "Clitoris crus" EXACT [FMA:20175] synonym: "crura of clitoris" RELATED [Wikipedia:Clitoral_crura] synonym: "crus clitoridis" RELATED [Wikipedia:Clitoral_crura] synonym: "crus of clitoris" RELATED [Wikipedia:Clitoral_crura] xref: EMAPA:19169 xref: EMAPA:30821 xref: FMA:20175 xref: SCTID:279860002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0006608 ! corpus cavernosum clitoridis [Term] id: UBERON:0006641 name: appendix epididymis namespace: uberon def: "On the head of the epididymis is a small stalked appendage (sometimes duplicated). It is named the appendix of the epididymis (or pedunculated hydatid), and is usually regarded as a detached efferent duct. This structure is derived from the Wolffian duct as opposed to the appendix testis which is derived from the mullerian duct remnant." [Wikipedia:Appendix_of_epididymidis] synonym: "appendix epididymis" RELATED [Wikipedia:Appendix_of_epididymidis] synonym: "appendix of the epididymis" RELATED [Wikipedia:Appendix_of_epididymidis] synonym: "epididymal appendix" EXACT [FMA:18268] synonym: "epididymis appendix" EXACT [FMA:18268] xref: EMAPA:19086 xref: FMA:18268 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005160 ! vestigial structure relationship: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0006642 name: muscle layer of oviduct namespace: uberon synonym: "Muscle layer of fallopian tube" EXACT [FMA:18318] synonym: "Muscle layer of oviduct" EXACT [FMA:18318] synonym: "Muscular coat of uterine tube" EXACT [FMA:18318] synonym: "Muscular layer of uterine tube" EXACT [FMA:18318] synonym: "Muscularis of uterine tube" EXACT [FMA:18318] synonym: "Tunica muscularis (Tuba uterina)" EXACT [FMA:18318] synonym: "Uterine tubal muscularis" EXACT [FMA:18318] synonym: "tunica muscularis tubae uterinae" EXACT [FMA:18318, FMA:TA] xref: EMAPA:29046 xref: FMA:18318 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscle layer [Term] id: UBERON:0006643 name: tunica albuginea of testis namespace: uberon def: "The Tunica Albuginea is the fibrous covering of the testis. It is a dense blue-white membrane, composed of bundles of white fibrous tissue which interlace in every direction. It is covered by the tunica vaginalis, except at the points of attachment of the epididymis to the testis, and along its posterior border, where the spermatic vessels enter the gland. It is applied to the tunica vasculosa over the glandular substance of the testis, and, at its posterior border, is reflected into the interior of the gland, forming an incomplete vertical septum, called the mediastinum testis (corpus Highmori)." [Wikipedia:Tunica_albuginea_of_testis] synonym: "Tunica albuginea (testis)" EXACT [FMA:19843] synonym: "tunica albuginea %28testicles%29" RELATED [Wikipedia:Tunica_albuginea_of_testis] xref: EHDAA2:0002096 xref: EHDAA:9388 xref: EMAPA:19289 xref: FMA:19843 xref: SCTID:279604006 xref: VHOG:0000801 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006610 ! tunica albuginea [Term] id: UBERON:0006644 name: tunica albuginea of ovary namespace: uberon def: "The tunica albuginea is the fibrous envelope of the corpora cavernosa penis. It is comprised of approximately 5% elastin, an extensible tissue that is primarily made up of the amino acids glycine, valine, alanine, and proline. The majority of the remaining tissue is comprised of collagen, which is made up of lysine, proline, glycine, alanine, and other amino acids . The tunica albuginea is directly involved in maintaining an erection; that is due to Buck's fascia constricting the deep dorsal vein of the penis, preventing blood from leaving and thus sustaining the erect state. The trabeculC& of the tunica albuginea are more delicate, nearly uniform in size, and the meshes between them smaller than in the corpora cavernosa penis: their long diameters, for the most part, corresponding with that of the penis. The external envelope or outer coat of the corpus spongiosum is formed partly of unstriped muscular fibers, and a layer of the same tissue immediately surrounds the canal of the urethra." [Wikipedia:Tunica_albuginea_%28penis%29] xref: EMAPA:30522 xref: FMA:18630 xref: SCTID:258409003 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006610 ! tunica albuginea relationship: part_of UBERON:0001307 ! capsule of ovary [Term] id: UBERON:0006645 name: adventitia of epididymis namespace: uberon synonym: "epididymis adventitia" EXACT [FMA:19136] xref: EMAPA:30443 xref: FMA:19136 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia [Term] id: UBERON:0006646 name: muscle layer of epididymis namespace: uberon xref: EMAPA:30447 xref: EMAPA:30747 xref: FMA:19149 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscle layer [Term] id: UBERON:0006647 name: adventitia of ductus deferens namespace: uberon synonym: "Adventitia of ductus deferens" EXACT [FMA:19238] synonym: "Adventitia of vas deferens" EXACT [FMA:19238] synonym: "Deferent ductal adventitia" EXACT [FMA:19238] synonym: "Tunica adventitia (Ductus deferens)" EXACT [FMA:19238] synonym: "tunica adventitia ductus deferentis" EXACT [FMA:19238, FMA:TA] xref: EMAPA:29767 xref: FMA:19238 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia [Term] id: UBERON:0006648 name: adventitia of seminal vesicle namespace: uberon synonym: "Adventitia of seminal gland" EXACT [FMA:19403] synonym: "Seminal vesicle adventitia" EXACT [FMA:19403] synonym: "Tunica adventitia (Vesicula seminalis)" EXACT [FMA:19403] synonym: "tunica adventitia glandulae vesiculosae" EXACT [FMA:19403, FMA:TA] xref: EMAPA:29775 xref: FMA:19403 xref: SCTID:252406002 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia [Term] id: UBERON:0006649 name: suspensory ligament of ovary namespace: uberon def: "A fold of peritoneum that extends out from the ovary to the wall of the pelvis. " [Wikipedia:Suspensory_ligament_of_ovary] comment: Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a \"termination\" of the ligament.[3] synonym: "infundibulopelvic fold" EXACT [FMA:19822] synonym: "infundibulopelvic ligament" EXACT [FMA:19822] xref: EMAPA:19085 xref: FMA:19822 xref: SCTID:279917007 is_a: UBERON:0002095 ! mesentery is_a: UBERON:0008841 ! suspensory ligament disjoint_from: UBERON:0008847 ! ovarian ligament [Term] id: UBERON:0006650 name: tunica vaginalis testis namespace: uberon def: "The tunica vaginalis is the serous covering of the testis. It is a pouch of serous membrane, derived from the saccus vaginalis of the peritoneum, which in the fetus preceded the descent of the testis from the abdomen into the scrotum. After its descent, that portion of the pouch which extends from the abdominal inguinal ring to near the upper part of the gland becomes obliterated; the lower portion remains as a shut sac, which invests the surface of the testis, and is reflected on to the internal surface of the scrotum; hence it may be described as consisting of a visceral and a parietal lamina." [Wikipedia:Tunica_vaginalis] synonym: "lamina parietalis" RELATED [Wikipedia:Tunica_vaginalis] synonym: "lamina visceralis" RELATED [Wikipedia:Tunica_vaginalis] synonym: "tunica vaginalis testis" RELATED [Wikipedia:Tunica_vaginalis] xref: EMAPA:19179 xref: FMA:19844 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0006651 name: appendix testis namespace: uberon def: "The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time." [Wikipedia:Appendix_of_testis] synonym: "Testis appendix" EXACT [FMA:19846] synonym: "appendices testis" RELATED [Wikipedia:Appendix_of_testis] synonym: "appendix of the testis" RELATED [Wikipedia:Appendix_of_testis] synonym: "appendix testis" RELATED [Wikipedia:Appendix_of_testis] xref: EMAPA:19087 xref: FMA:19846 xref: SCTID:279601003 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure [Term] id: UBERON:0006652 name: muscular layer of vagina namespace: uberon synonym: "Muscular coat of vagina" EXACT [FMA:19976] synonym: "tunica muscularis vaginae" EXACT [FMA:19976, FMA:TA] xref: EMAPA:30997 xref: FMA:19976 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0006653 name: glans clitoris namespace: uberon def: "Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]." [BTO:0003117, Wikipedia:Clitoral_glans] synonym: "clitoris glans" EXACT [FMA:19999] synonym: "glans clitoridis" RELATED [Wikipedia:Clitoral_glans] synonym: "glans clitoris" RELATED [Wikipedia:Clitoral_glans] xref: BTO:0003117 xref: EMAPA:19170 xref: EMAPA:30829 xref: FMA:19999 xref: ncithesaurus:Glans_Clitoris is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0008324 ! erectile tissue relationship: part_of UBERON:0002411 ! clitoris relationship: part_of UBERON:0006233 ! female genital tubercle [Term] id: UBERON:0006654 name: perineal body namespace: uberon def: "The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle . It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder." [Wikipedia:Perineal_body] synonym: "central tendinous point" RELATED [Wikipedia:Perineal_body] synonym: "central tendinous point of the perineum" RELATED [Wikipedia:Perineal_body] synonym: "central tendon of perineum" EXACT [FMA:20274, Wikipedia:Perineal_body] xref: EMAPA:17892 xref: EMAPA:18921 xref: FMA:20274 xref: SCTID:367754000 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002356 ! perineum [Term] id: UBERON:0006655 name: septum of scrotum namespace: uberon synonym: "Scrotal septum" EXACT [FMA:20729] xref: EMAPA:29745 xref: FMA:20729 xref: SCTID:279591002 is_a: UBERON:0003037 ! septum is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001300 ! scrotum [Term] id: UBERON:0006656 name: deep dorsal vein of penis namespace: uberon xref: EMAPA:19219 xref: FMA:21354 xref: SCTID:55433007 is_a: UBERON:0001638 ! vein is_a: UBERON:0004803 ! penis epithelium relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0006657 name: glenoid fossa namespace: uberon def: "Cavity for the articulation of the forelimb formed by the scapula, coracoid, and clavicle." [AAO:Maglia_et_al_2007] synonym: "Cavitus glenoidalis" EXACT [FMA:23275] synonym: "Glenoid cavity" EXACT [FMA:23275] synonym: "Glenoid cavity of scapula" EXACT [FMA:23275] synonym: "cavitas glenoidalis scapulae" EXACT [FMA:23275, FMA:TA] synonym: "glenoid cavity" RELATED [AAO:0000749] xref: AAO:0000749 xref: EMAPA:25122 xref: FMA:23275 xref: ncithesaurus:Glenoid_Fossa is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0006658 name: inter-phalangeal joint namespace: uberon synonym: "interphalangeal joint" EXACT [galen:InterphalangealJoint] xref: FMA:42765 xref: galen:InterphalangealJoint is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0006659 name: cruciate ligament namespace: uberon def: "One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]." [Wikipedia:Cruciate_ligament] synonym: "cruciform ligament" EXACT [Wikipedia:Cruciate_ligament] xref: EMAPA:19010 xref: FMA:44611 xref: galen:CruciateLigament is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0006660 name: muscle layer namespace: uberon comment: TODO - add subclasses. See also: muscular coat synonym: "muscular layer" EXACT [OBOL:automatic] synonym: "muscularis layer" EXACT [FMA:45634] xref: EMAPA:29034 xref: FMA:45634 xref: ncithesaurus:Muscle_Layer is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0006661 name: epicranial aponeurosis namespace: uberon def: "The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance." [Wikipedia:Galea_aponeurotica] synonym: "Epicranial aponeurosis" EXACT [FMA:46768] synonym: "Epicranius aponeurosis" EXACT [FMA:46768] synonym: "Galea aponeurotica" EXACT [FMA:46768] synonym: "aponeurosis epicranialis" EXACT [FMA:46768, FMA:TA] synonym: "cranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] synonym: "epicranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] synonym: "galea aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] synonym: "galeal aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] xref: EMAPA:19210 xref: FMA:46768 xref: SCTID:368677009 is_a: UBERON:0006614 ! aponeurosis relationship: part_of UBERON:0000403 ! scalp [Term] id: UBERON:0006662 name: musculo-phrenic vein namespace: uberon xref: EMAPA:19222 xref: FMA:4732 xref: SCTID:1895000 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001589 ! internal thoracic vein [Term] id: UBERON:0006663 name: hemiazygos vein namespace: uberon def: "The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column." [Wikipedia:Hemiazygos_vein] comment: Taxon notes: The major anatomic variation between the pig and other mammalian species is the presence of the large left azygos vein, which enters the coronary sinus (Fig. 1). In other mammals, hemiazygos vein enters the pre- cava. synonym: "hemi-azygos vein" EXACT [FMA:4944] synonym: "hemiazygos" RELATED [Wikipedia:Hemiazygos_vein] synonym: "hemiazygos veins" RELATED [Wikipedia:Hemiazygos_vein] synonym: "hemiazygous vein" EXACT [FMA:4944, Wikipedia:Hemiazygos_vein] synonym: "inferior hemi-azygos vein" EXACT [FMA:4944] synonym: "vena hemiazygos" EXACT [FMA:4944, FMA:TA] xref: EHDAA2:0004534 xref: EMAPA:18251 xref: FMA:4944 xref: SCTID:244408009 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001594 ! azygos vein [Term] id: UBERON:0006664 name: greater palatine artery namespace: uberon def: "The greater palatine artery is a terminal branch of the maxillary artery. It branches off of the maxillary artery in the pterygopalatine fossa and descends through the greater palatine foramen along with the greater palatine nerve and supplies the hard palate. It also anastomosis through the incisive canal with the sphenopalatine artery to supply the nasal cavity." [Wikipedia:Greater_palatine_artery] comment: todo - check for synonymy between greater and major; branch_of relation is made in FMA at level of descending GPA xref: EMAPA:18754 xref: FMA:49795 xref: MA:0001993 xref: SCTID:312163002 is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0006665 name: accessory hemiazygos vein namespace: uberon def: "The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]." [Wikipedia:Accessory_hemiazygos_vein] comment: todo - add superclass synonym: "Accessory hemi-azygos vein" EXACT [FMA:5011] synonym: "Superior hemi-azygos vein" EXACT [FMA:5011] synonym: "Vena azygos accessoria" EXACT [FMA:5011] synonym: "vena hemiazygos accessoria" EXACT [FMA:5011, FMA:TA] xref: EMAPA:19217 xref: FMA:5011 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006666 name: great cerebral vein of Galen namespace: uberon synonym: "great cerebral vein of Galen" EXACT [FMA:50993] synonym: "vein of Galen" EXACT [FMA:50993] xref: EMAPA:19311 xref: FMA:50993 xref: ncithesaurus:Great_Cerebral_Vein_of_Galen is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0006667 name: pituitary fossa namespace: uberon synonym: "hypophyseal fossa" EXACT [FMA:54721] synonym: "pituitary fossa" EXACT [FMA:54721] xref: EMAPA:19195 xref: FMA:54721 xref: SCTID:264194004 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0003689 ! sella turcica [Term] id: UBERON:0006668 name: carotid canal namespace: uberon def: "On the interior surface of the temporal bone, behind the rough surface of the apex, is the large circular aperture of the carotid canal, which ascends at first vertically, and then, making a bend, runs horizontally forward and medialward. It transmits into the cranium, the internal carotid artery, and the carotid plexus of nerves. Sympathetics to the head also pass through the carotid canal. They have several motor functions: raise the eyelid (superior tarsal muscle), dilate pupil, innervate sweat glands of face and scalp and constricts blood vessels in head[WP]." [Wikipedia:Carotid_canal] xref: EMAPA:18707 xref: FMA:55805 is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0006669 name: alveolar canal namespace: uberon def: "The infratemporal surface of the maxilla is pierced about its center by the apertures of the alveolar canals, which transmit the posterior superior alveolar vessels and nerves[WP]." [Wikipedia:Alveolar_canals] xref: EMAPA:25099 xref: FMA:57743 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0006670 name: central tendon namespace: uberon synonym: "central tendon of diaphragm" EXACT [FMA:58279] synonym: "centrum tendineum" EXACT [FMA:58279] synonym: "centrum tendineum diaphragmatis" EXACT [FMA:58279, FMA:TA] xref: EMAPA:17702 xref: FMA:58279 xref: SCTID:244943002 xref: VHOG:0001399 xref: ncithesaurus:Central_Tendon_of_the_Diaphragm is_a: UBERON:0000043 ! tendon [Term] id: UBERON:0006671 name: orbital fat pad namespace: uberon synonym: "intraorbital fat pad" EXACT [FMA:59005] synonym: "orbital fat" EXACT [FMA:59005] synonym: "retrobulbar fat" EXACT [FMA:59005] xref: EMAPA:19152 xref: FMA:59005 xref: SCTID:363656009 is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0003916 ! fat pad is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006672 name: incisive canal namespace: uberon xref: EMAPA:19034 xref: FMA:59107 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0006673 name: mandibular canal namespace: uberon xref: EMAPA:19161 xref: FMA:59473 xref: SCTID:368876003 is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0006674 name: inguinal ring namespace: uberon xref: EMAPA:19172 xref: EMAPA:29307 xref: FMA:65075 xref: SCTID:278830004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006204 ! inguinal ligament [Term] id: UBERON:0006675 name: venous valve namespace: uberon synonym: "valve of vein" EXACT [FMA:68095] xref: FMA:68095 is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0006676 name: muscularis mucosa namespace: uberon def: "The lamina muscularis mucosae (or muscularis mucosa) is the thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa. In the gastrointestinal tract, the term mucosa or \"mucous membrane\" refers to the combination of epithelium, lamina propria, and (where it occurs) muscularis mucosa. The etymology suggests this since the Latin names translate to \"the mucosa's own special layer\" (lamina propria mucosae) and \"muscular layer of the mucosa\" (lamina muscularis mucosae). The muscularis mucosa is composed of several thin layers of smooth muscle fibers oriented in different ways which keeps the mucosal surface and underlying glands in a constant state of gentle agitation to expel contents of glandular crypts and enhance contact between epithelium and the contents of the lumen." [Wikipedia:Muscularis_mucosae] synonym: "laminar muscularis mucosa" RELATED [Wikipedia:Muscularis_mucosae] synonym: "muscularis mucosae" EXACT [FMA:68413] xref: BTO:0004839 xref: FMA:68413 xref: SCTID:370140002 xref: galen:MuscularisMucosae xref: ncithesaurus:Muscularis_Mucosa is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0006677 name: surface of epithelium namespace: uberon synonym: "epithelium surface" EXACT [FMA:70997] xref: FMA:70997 is_a: UBERON:0000015 ! anatomical boundary [Term] id: UBERON:0006678 name: foramen secundum namespace: uberon def: "a foramen in the septum primum." [Wikipedia:Foramen_secundum] synonym: "ostium secundum" EXACT [SCTID:308854001] xref: EHDAA2:0001828 xref: EMAPA:17863 xref: FMA:71105 xref: SCTID:308854001 xref: VHOG:0001471 xref: ncithesaurus:Foramen_Secundum is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004154 ! septum primum [Term] id: UBERON:0006679 name: carina tracheae namespace: uberon def: "In anatomy, the carina is a cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea (usually at the level of the 4th to 5th thoracic vertebrae). The mucous membrane of the carina is the most sensitive area of the trachea and larynx for triggering a cough reflex. Widening and distortion of the carina is a serious sign because it usually indicates carcinoma of the lymph nodes around the region where the trachea divides. Tracheobronchial injury, an injury to the airways, occurs within 2.5 cm of the carina 40b80% of the time." [Wikipedia:Carina_of_trachea] synonym: "Carina" EXACT [FMA:7465] synonym: "Tracheal carina" EXACT [FMA:7465] synonym: "bifurcation of the trachea" RELATED [Wikipedia:Carina_of_trachea] synonym: "carina %28anatomy%29" RELATED [Wikipedia:Carina_of_trachea] synonym: "carina of trachea" RELATED [Wikipedia:Carina_of_trachea] xref: EMAPA:18407 xref: FMA:7465 xref: SCTID:181214003 xref: ncithesaurus:Carina is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0006680 name: trachealis namespace: uberon def: "A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]." [Wikipedia:Trachealis_muscle] synonym: "Tracheal muscle" EXACT [FMA:7466] synonym: "Trachealis muscle" EXACT [FMA:7466] xref: EMAPA:19193 xref: FMA:7466 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0003387 ! smooth muscle of trachea relationship: part_of UBERON:0003387 ! smooth muscle of trachea [Term] id: UBERON:0006681 name: interthalamic adhesion namespace: uberon synonym: "Interthalamic connection" EXACT [FMA:74869] synonym: "Middle commissure" EXACT [FMA:74869] xref: EMAPA:18546 xref: FMA:74869 is_a: UBERON:0001020 ! commissure [Term] id: UBERON:0006682 name: hypoglossal canal namespace: uberon xref: EMAPA:19012 xref: FMA:75370 xref: SCTID:139380001 is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0006683 name: posterior fontanelle namespace: uberon xref: EMAPA:19200 xref: FMA:75440 is_a: UBERON:0002221 ! fontanelle [Term] id: UBERON:0006684 name: sphenoidal fontanelle namespace: uberon xref: EMAPA:19229 xref: FMA:75441 is_a: UBERON:0002221 ! fontanelle [Term] id: UBERON:0006685 name: pharyngeal tubercle namespace: uberon xref: EMAPA:19250 xref: FMA:75746 is_a: UBERON:0005813 ! tubercle [Term] id: UBERON:0006686 name: spinal vein namespace: uberon synonym: "Spinal vein" EXACT [FMA:76735] synonym: "vena spinalis" EXACT [FMA:76735, FMA:TA] xref: EMAPA:18255 xref: FMA:76735 xref: SCTID:181376008 is_a: UBERON:0001638 ! vein is_a: UBERON:0004258 ! back blood vessel [Term] id: UBERON:0006687 name: median sacral vein namespace: uberon xref: EMAPA:26064 xref: FMA:77168 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006688 name: sublingual caruncle namespace: uberon def: "The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity." [Wikipedia:Sublingual_caruncle] xref: EMAPA:18961 xref: FMA:77273 xref: SCTID:85139009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006689 name: frenulum of tongue namespace: uberon def: "The frenulum of tongue (or lingual frenulum) is the frenulum of the tongue, a small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [Wikipedia:Frenulum_of_tongue] synonym: "frenulum" BROAD [] synonym: "frenulum lingu%c3%a6" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "frenulum linguae" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "frenulum of the tongue" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "lingual frenulum" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "lingual frenum" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "tongue frenulum" EXACT [FMA:54659] xref: EMAPA:18656 xref: EMAPA:18874 xref: FMA:54659 xref: ncithesaurus:Frenulum is_a: UBERON:0000344 ! mucosa is_a: UBERON:0005020 ! mucosa of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006690 name: deep dorsal vein of clitoris namespace: uberon xref: EMAPA:19218 xref: FMA:77504 xref: SCTID:25834009 is_a: UBERON:0001638 ! vein is_a: UBERON:0003480 ! vein of clitoris relationship: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0006691 name: tentorium cerebelli namespace: uberon def: "The tentorium cerebelli or cerebellar tentorium is an extension of the dura mater that separates the cerebellum from the inferior portion of the occipital lobes." [Wikipedia:Tentorium_cerebelli] synonym: "Cerebellar tentorium" EXACT [FMA:83966] synonym: "infratentorial neoplasms" RELATED [Wikipedia:Tentorium_cerebelli] synonym: "supratentorial neoplasms" RELATED [Wikipedia:Tentorium_cerebelli] xref: EMAPA:18210 xref: FMA:83966 xref: SCTID:244428008 xref: VHOG:0001298 xref: ncithesaurus:Tentorium_Cerebelli is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002363 ! dura mater [Term] id: UBERON:0006692 name: vertebral canal namespace: uberon def: "The spinal canal (or vertebral canal or spinal cavity) is the space in vertebrae through which the spinal cord passes. It is a process of the dorsal human body cavity. This canal is enclosed within the vertebral foramen of the vertebrae. In the intervertebral spaces, the canal is protected by the ligamentum flavum posteriorly and the posterior longitudinal ligament anteriorly. The outermost layer of the meninges, the dura mater, is closely associated with the arachnoid which in turn is loosely connected to the innermost layer of the meninges, the pia mater. The meninges divide the spinal canal into the epidural space and the subarachnoid space. The pia mater is closely attached to the spinal cord. A subdural space is generally only present due to trauma and/or pathological situations. The subarachnoid space is filled with cerebrospinal fluid and contains the vessels that supply the spinal cord, namely the anterior spinal artery and the paired posterior spinal arteries, accompanied by a corresponding spinal veins. The spinal arteries form anastomoses known as the vasocorona of the spinal cord. The epidural space contains loose fatty tissue, and a network of large, thin-walled blood vessels called the anterior vertebral venous plexus and the posterior vertebral venous plexus The spinal canal was first described by Jean Fernel." [Wikipedia:Spinal_canal] comment: todo - check neural vs vertebral cabal synonym: "foramen vertebrale" RELATED [AAO:0000693] synonym: "neural canal" RELATED [AAO:0000693] synonym: "spinal canal" RELATED [AAO:0000693] synonym: "spinal cavity" RELATED [Wikipedia:Spinal_canal] synonym: "vertebral canal" RELATED [Wikipedia:Spinal_canal] xref: AAO:0000693 xref: EMAPA:25440 xref: EMAPA:25448 xref: EMAPA:25456 xref: EMAPA:25464 xref: EMAPA:25472 xref: EMAPA:25480 xref: EMAPA:25488 xref: EMAPA:25496 xref: EMAPA:25504 xref: EMAPA:25512 xref: EMAPA:25520 xref: EMAPA:25528 xref: EMAPA:25536 xref: EMAPA:25544 xref: EMAPA:25552 xref: EMAPA:25560 xref: EMAPA:25568 xref: EMAPA:25576 xref: EMAPA:25584 xref: EMAPA:25592 xref: EMAPA:25600 xref: EMAPA:25608 xref: EMAPA:25616 xref: EMAPA:25624 xref: EMAPA:25632 xref: EMAPA:25640 xref: EMAPA:25648 xref: EMAPA:25656 xref: EMAPA:25664 xref: EMAPA:25672 xref: EMAPA:25680 xref: EMAPA:25688 xref: EMAPA:25731 xref: EMAPA:25738 xref: EMAPA:25745 xref: EMAPA:25752 xref: EMAPA:25759 xref: EMAPA:26521 xref: EMAPA:26537 xref: FMA:9680 xref: GAID:242 xref: ncithesaurus:Vertebral_Canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0006693 name: protein-based cuticle namespace: uberon def: "An example of this is found in Caenorhabditis elegans" [GO:0007592] is_a: UBERON:0001002 ! cuticle [Term] id: UBERON:0006694 name: cerebellum vasculature namespace: uberon is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0005284 ! brain vasculature relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0006695 name: mammillary axonal complex namespace: uberon def: "The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain[GO]." [GO:0061373] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0006696 name: mammillothalamic axonal tract namespace: uberon def: "The mammillothalamic tract is the collection of axons that connects the two major subdivisions of the diencephalon (hypothalamus and thalamus) and closes the diencephalic circuit[GO]." [GO:0061374] is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0006697 name: mammillotectal axonal tract namespace: uberon def: "The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus." [GO:0061375] is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0006698 name: mammillotegmental axonal tract namespace: uberon def: " The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons" [GO:0061376] is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0006699 name: foramen caecum of tongue namespace: uberon def: "The dorsum of the tongue is convex and marked by a median sulcus, which divides it into symmetrical halves; this sulcus ends behind, about 2.5 cm from the root of the organ, in a depression, the foramen cecum, from which a shallow groove, the sulcus terminalis, runs lateral and anterior on either side to the margin of the tongue. The foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland." [Wikipedia:Foramen_cecum_%28tongue%29] comment: consider merging with FC of thyroid synonym: "foramen cecum of tongue" EXACT [FMA:54828] synonym: "foramen of morgagni" EXACT [FMA:54828] synonym: "morand's foramen" EXACT [FMA:54828] xref: FMA:54828 xref: SCTID:368738001 is_a: UBERON:0000061 ! anatomical structure disjoint_from: UBERON:0006713 ! foramen cecum of frontal bone [Term] id: UBERON:0006713 name: foramen cecum of frontal bone namespace: uberon def: "The frontal crest of the frontal bone ends below in a small notch which is converted into a foramen, the foramen cecum, by articulation with the ethmoid. This foramen varies in size in different subjects, and is frequently impervious; when open, it transmits a vein from the nose to the superior sagittal sinus. This has clinical importance in that infections of the nose and nearby areas can be transmitted to the meninges and brain from what is known as the danger triangle of the face." [Wikipedia:Foramen_cecum_%28frontal_bone%29] comment: todo - check if this is what the FMA ID really denotes xref: FMA:57443 is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0006714 name: tibiofibula namespace: uberon def: "Paired, endochondral bones formed by the fusion of the tibia and fibula. They form the shanks, extending from the knees to the ankles." [AAO:Maglia_et_al_2007] synonym: "os cruris" RELATED [AAO:0000902] synonym: "tibia-fibula" EXACT [XAO:0003213] synonym: "tibiofibula" EXACT [] xref: AAO:0000902 xref: XAO:0003213 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004251 ! lower leg bone relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0003823 ! hindlimb zeugopod property_value: "has_fused_element" UBERON:0000979 property_value: "has_fused_element" UBERON:0001446 [Term] id: UBERON:0006715 name: radio-ulna namespace: uberon def: "Paired, long bones of endochondral origin formed by the fusion of the radius and ulna." [AAO:Maglia_et_al_2007] synonym: "radioulna" EXACT [XAO:0003209] synonym: "radius-ulna" EXACT [XAO:0003209] xref: AAO:0000901 xref: XAO:0003209 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008962 ! forelimb bone relationship: part_of UBERON:0001440 ! forelimb skeleton property_value: "has_fused_element" UBERON:0001423 property_value: "has_fused_element" UBERON:0001424 [Term] id: UBERON:0006716 name: mesopodium namespace: uberon def: "The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus)" [MA:th, Wikipedia:Carpus_and_tarsus_of_land_vertebrates] comment: Naming conventions for pod terms under discussion within phenoscape group synonym: "carpus/tarsus" EXACT [] synonym: "mesopodial limb segment" EXACT [MA:th] is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006717 name: skeleton of autopod namespace: uberon comment: Naming conventions for pod terms under discussion within phenoscape group is_a: UBERON:0004381 ! skeleton of limb [Term] id: UBERON:0006718 name: medial pterygoid muscle namespace: uberon def: "The medial pterygoid (or internal pterygoid muscle), is a thick, quadrilateral muscle of mastication. The mandibular branch of the fifth cranial nerve, the trigeminal nerve, innervates the medial pterygoid muscle." [Wikipedia:Medial_pterygoid_muscle] synonym: "internal pterygoid" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "internal pterygoid muscle" RELATED [] synonym: "medial pteregoid" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "pterygoid medialis" EXACT [MA:0002361] synonym: "pterygoidei internus" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "pterygoideus internus" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "pterygoideus medial" RELATED [Wikipedia:Medial_pterygoid_muscle] xref: FMA:49011 xref: MA:0002361 xref: SCTID:244771003 xref: ncithesaurus:Internal_Pterygoid_Muscle is_a: UBERON:0006720 ! pterygoid muscle [Term] id: UBERON:0006719 name: lateral pterygoid muscle namespace: uberon def: "The lateral pterygoid (or external pterygoid) is a muscle of mastication with two heads." [Wikipedia:Lateral_pterygoid_muscle] synonym: "external pterygoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "lateral pteregoid" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "lateral pteregoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "lateral pterygoid" EXACT [FMA:49015, Wikipedia:Lateral_pterygoid_muscle] synonym: "musculus pterygoides lateralis" EXACT [FMA:49015] synonym: "pterygoid lateralis" EXACT [MA:0002360] synonym: "pterygoideus externus" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "pterygoideus externus muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "pterygoideus lateral" RELATED [Wikipedia:Lateral_pterygoid_muscle] xref: EMAPA:25140 xref: FMA:49015 xref: MA:0002360 xref: SCTID:244772005 xref: ncithesaurus:External_Pterygoid_Muscle is_a: UBERON:0006720 ! pterygoid muscle [Term] id: UBERON:0006720 name: pterygoid muscle namespace: uberon xref: EMAPA:25139 xref: GAID:147 xref: MESH:A.02.633.567.600.700 xref: SCTID:244770002 is_a: UBERON:0003681 ! masticatory muscle [Term] id: UBERON:0006721 name: alisphenoid bone namespace: uberon synonym: "ala major (os sphenoidale)" EXACT [FMA:52868] synonym: "alisphenoid bone" EXACT [MA:0002772] synonym: "greater wing of sphenoid bone" RELATED [MA:0002772] synonym: "greater wing of sphenoidal bone" EXACT [FMA:52868] xref: FMA:52868 xref: MA:0002772 xref: SCTID:361298007 is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0006722 name: manubrium of malleus namespace: uberon def: "The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane." [http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus] synonym: "handle of malleus" RELATED [MA:0002985] synonym: "malleal manubrium" RELATED [MA:0002985] synonym: "malleus handle" EXACT [FMA:52760, MA:0002985] synonym: "malleus manubrium" RELATED [MA:0002985] synonym: "manubrium mallei" RELATED [MA:0002985] synonym: "manubrium of malleus" EXACT [FMA:52760, MA:0002985] xref: FMA:52760 xref: MA:0002985 xref: SCTID:264091009 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001689 ! malleus [Term] id: UBERON:0006723 name: cochlear modiolus namespace: uberon def: "a conical shaped central axis in the cochlea. It consists of spongy bone and the cochlea turns approximately 2.5 times around it. The spiral ganglion is situated inside it." [Wikipedia:Modiolus_(cochlea)] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "cochlea modiolus" EXACT [FMA:61278] synonym: "modiolus" EXACT [MA:0001182] synonym: "modiolus of cochlea" EXACT [FMA:61278] xref: BTO:0001693 xref: FMA:61278 xref: MA:0001182 xref: SCTID:361314007 xref: ncithesaurus:Modiolus is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0006585 ! vestibular organ relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0007223 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! osseus cochlea [Term] id: UBERON:0006724 name: osseus spiral lamina namespace: uberon synonym: "lamina modioli cochleae" EXACT [FMA:77710, FMA:TA] synonym: "lamina of modiolus cochleae" EXACT [FMA:77710] synonym: "lamina of modiolus of cochlea" EXACT [FMA:77710] synonym: "osseous spiral lamina of cochlea" EXACT [FMA:77710] xref: FMA:77710 xref: MA:0001184 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0007223 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! osseus cochlea [Term] id: UBERON:0006725 name: spiral ligament namespace: uberon comment: Note that this is not classified as a ligament in FMA synonym: "spiral ligament of cochlear duct" EXACT [FMA:77834] xref: FMA:77834 xref: MA:0001192 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008846 ! skeletal ligament is_a: UBERON:0008845 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! nonskeletal ligament relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0006726 name: outer canthus namespace: uberon comment: see also FMA:59321 synonym: "lateral angle of eye" RELATED [FMA:59321] synonym: "lateral canthus" RELATED [MA:0001264] synonym: "lateral canthus of eye" EXACT [FMA:59321] synonym: "lateral palpebral commissure" EXACT [FMA:59315] xref: EHDAA2:0000910 xref: EHDAA:9039 xref: FMA:59315 xref: MA:0001264 xref: ncithesaurus:Outer_Canthus is_a: UBERON:0006742 ! canthus relationship: part_of UBERON:0001711 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! eyelid [Term] id: UBERON:0006727 name: liver left lateral lobe namespace: uberon synonym: "lateral segment of left lobe of liver" EXACT [FMA:14501] synonym: "lateral segment of liver" EXACT [FMA:14501] synonym: "segmentum laterale (lobus hepatis sinister)" EXACT [FMA:14501] xref: FMA:14501 xref: MA:0001641 xref: SCTID:271288003 is_a: UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0006728 name: liver left medial lobe namespace: uberon synonym: "medial segment of left lobe of liver" EXACT [FMA:14500] synonym: "medial segment of liver" EXACT [FMA:14500] synonym: "segmentum mediale (lobus hepatis sinister)" EXACT [FMA:14500] xref: FMA:14500 xref: MA:0001642 xref: SCTID:271085007 is_a: UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0006729 name: liver perisinusoidal space namespace: uberon synonym: "Disse's space" EXACT [FMA:63162] synonym: "hepatic perisinusoidal space" EXACT [FMA:63162] synonym: "perisinusoidal space of Disse" EXACT [FMA:63162] synonym: "space of Disse" EXACT [FMA:63162] xref: FMA:63162 xref: MA:0002497 xref: SCTID:17779003 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0006742 name: canthus namespace: uberon def: "Canthus (pl. canthi, palpebral commissures) is either corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface." [Wikipedia:Canthus] synonym: "bicanthal" RELATED [Wikipedia:Canthus] synonym: "bicanthal plane" RELATED [Wikipedia:Canthus] synonym: "canthi" RELATED [Wikipedia:Canthus] synonym: "canthoplasty" RELATED [Wikipedia:Canthus] synonym: "canthorum" RELATED [Wikipedia:Canthus] synonym: "canthus %28anatomy%29" RELATED [Wikipedia:Canthus] synonym: "lateral palpebral commissure" RELATED [Wikipedia:Canthus] synonym: "medial palpebral commissure" RELATED [Wikipedia:Canthus] synonym: "palpebral commissure" EXACT [FMA:59222] synonym: "palpebral commissures" RELATED [Wikipedia:Canthus] xref: FMA:59222 xref: SCTID:181145006 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0006743 name: paleodentate of dentate nucleus namespace: uberon synonym: "PDT" EXACT [NIF_GrossAnatomy:birnlex_1490] synonym: "paleodentate of dentate nucleus" EXACT [NIF_GrossAnatomy:birnlex_1490] synonym: "paleodentate portion of dentate nucleus" EXACT [FMA:72540] xref: FMA:72540 xref: NIF_GrossAnatomy:birnlex_1490 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0003528 ! brain grey matter relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0006749 name: superior parathyroid gland namespace: uberon comment: Taxon notes: Mammals typically have four parathyroids, while other groups typically have six subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: EHDAA2:0001954 xref: EHDAA:3870 xref: EHDAA:9135 xref: FMA:55558 xref: SCTID:245540001 xref: ncithesaurus:Superior_Parathyroid_Gland is_a: UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0006755 name: inferior parathyroid gland namespace: uberon comment: Taxon notes: Mammals typically have four parathyroids, while other groups typically have six subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: EHDAA2:0000821 xref: EHDAA:3864 xref: EHDAA:9127 xref: FMA:55559 xref: SCTID:245542009 xref: ncithesaurus:Inferior_Parathyroid_Gland is_a: UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0006756 name: median lingual swelling namespace: uberon def: "During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]." [Wikipedia:Tuberculum_impar] comment: The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview] synonym: "median lingual swelling" EXACT [EHDAA2:0001081] synonym: "median tongue bud" EXACT [http://emedicine.medscape.com/article/845125-overview] synonym: "tuberculum impar" EXACT [] synonym: "tuberculum linguale mediale" EXACT [Wikipedia:Tuberculum_impar] xref: EHDAA2:0001081 xref: EMAPA:17187 xref: SCTID:308821003 xref: VHOG:0000730 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006260 ! lingual swellings [Term] id: UBERON:0006757 name: lateral lingual swelling namespace: uberon def: "During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line." [Wikipedia:Lateral_lingual_swelling] comment: Structure notes: paired synonym: "lateral lingual prominence" RELATED [] synonym: "lateral swellings" RELATED [Wikipedia:Lateral_lingual_swelling] synonym: "tuberculum laterale" RELATED [Wikipedia:Lateral_lingual_swelling] xref: EHDAA2:0000911 xref: EMAPA:17189 xref: VHOG:0000731 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006260 ! lingual swellings [Term] id: UBERON:0006761 name: corneo-scleral junction namespace: uberon def: "The corneal limbus is the border of the cornea and the sclera (the white of the eye). The limbus is a common site for the occurrence of corneal epithelial neoplasm. Limbus contains radially oriented fibrovascular ridges known as the palisades of Vogt that may harbour a stem cell population[WP]. An annular transitional zone, approximately 1 mm wide, between the cornea and the bulbar conjunctiva and sclera. It is highly vascular and is involved in the metabolism of the cornea. It is ophthalmologically significant in that it appears on the outer surface of the eyeball as a slight furrow, marking the line between the clear cornea and the sclera. (Dictionary of Visual Science, 3d ed)[MeSH]" [Wikipedia:Corneal_limbus] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "corneal limbus" EXACT [FMA:58342, GAID:896] synonym: "corneoscleral junction" RELATED [GAID:896] synonym: "limbus corneae" RELATED [Wikipedia:Corneal_limbus] synonym: "sclerocorneal junction" EXACT [FMA:58342] synonym: "sclerocorneal limbus" RELATED [GAID:896] xref: EFO:0001403 xref: FMA:58342 xref: GAID:896 xref: MESH:A.09.371.060.217.659 xref: SCTID:63716004 xref: ZFA:0005570 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000019 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! camera-type eye [Term] id: UBERON:0006762 name: suspensory ligament of lens namespace: uberon def: "The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]." [Wikipedia:Zonule_of_Zinn] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Zinn's membrane" EXACT [FMA:58838] synonym: "ciliary zonule" EXACT [FMA:58838, Wikipedia:Zonule_of_Zinn] synonym: "suspensory ligament of the lens" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonula" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonula ciliaris" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonular fiber" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonule" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonule of Zinn" EXACT [FMA:58838] synonym: "zonules" EXACT PLURAL [ZFA:0005573] xref: FMA:58838 xref: SCTID:362524000 xref: ZFA:0005573 is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008841 ! suspensory ligament relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006763 name: epithelium of conjunctiva namespace: uberon synonym: "conjunctiva epithelium" EXACT [FMA:62131] synonym: "conjunctival epithelium" EXACT [BTO:0005131] xref: BTO:0005131 xref: EFO:0001916 xref: FMA:62131 xref: ncithesaurus:Conjunctival_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0006764 name: anterior communicating artery namespace: uberon def: "In human anatomy, the anterior communicating artery is a blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis." [Wikipedia:Anterior_communicating_artery] xref: EHDAA2:0000586 xref: EMAPA:18599 xref: FMA:50169 xref: SCTID:181311009 xref: ncithesaurus:Anterior_Communicating_Artery is_a: UBERON:0006347 ! communicating artery relationship: part_of UBERON:0003709 ! circle of Willis [Term] id: UBERON:0006765 name: left anterior vena cava namespace: uberon xref: EMAPA:18418 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001585 ! anterior vena cava [Term] id: UBERON:0006766 name: right anterior vena cava namespace: uberon comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). Note that FMA:4720 is equivalent to both anterior vena cava and right anterior vena cava xref: EMAPA:18419 xref: FMA:4720 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001585 ! anterior vena cava [Term] id: UBERON:0006767 name: head of femur namespace: uberon def: "The hemispheric articular surface at the upper extremity of the thigh bone[Stedman, 26th ed]. The femur head is the highest part of the thigh bone. It is supported by the neck of the femur. The head is globular and forms rather more than a hemisphere, is directed upward, medialward, and a little forward, the greater part of its convexity being above and in front. Its surface is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea capitis femoris, which is situated a little below and behind the center of the head, and gives attachment to the ligament of head of femur. If there is a fracture of the neck of the femur, the blood supply through the ligament becomes crucial. In orthopedic surgery, the head of the femur is important because it can undergo avascular necrosis and consequent osteochondritis dissecans. The head is removed in total hip replacement surgery [WP]." [MESH:A.02.835.232.500.247.343, Wikipedia:Femur_head] synonym: "acetabular head" EXACT [AAO:0000892] synonym: "capital femoral epiphysis" RELATED [http://medical-dictionary.thefreedictionary.com/capital+femoral+epiphysis] synonym: "caput femoris" RELATED [AAO:0000892, Wikipedia:Femur_head] synonym: "femoral head" EXACT [FMA:32851] synonym: "femur head" RELATED [MESH:A.02.835.232.500.247.343] xref: AAO:0000892 xref: FMA:32851 xref: MESH:A.02.835.232.500.247.343 xref: SCTID:361791000 xref: galen:FemoralHead xref: ncithesaurus:Head_of_the_Femur is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0006768 name: epiphyseal line namespace: uberon synonym: "epiphysial junction" EXACT [FMA:9918] synonym: "line of bony union" EXACT [FMA:9918] xref: FMA:9918 xref: SCTID:333108008 is_a: UBERON:0000982 ! skeletal joint relationship: part_of UBERON:0001438 ! metaphysis [Term] id: UBERON:0006770 name: apophysis namespace: uberon xref: FMA:75428 xref: SCTID:65000005 is_a: UBERON:0004530 ! bony projection [Term] id: UBERON:0006771 name: long bone epiphyseal plate proliferative zone namespace: uberon def: "germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix[MP]." [MP:0003662] comment: In this zone, chondrocytes undergo rapid mitosis, forming distinctive looking stacks[WP] synonym: "epiphyseal plate proliferative zone" EXACT [] synonym: "zone of proliferation" RELATED [MA:0002976] xref: MA:0002976 is_a: UBERON:0006775 ! zone of epiphyseal plate [Term] id: UBERON:0006772 name: long bone epiphyseal plate hypertrophic zone namespace: uberon def: "the layer of the epiphyseal plate of a long bone where chondrocytes mature and enlarge[MP]." [MP:0000165, https://sourceforge.net/tracker/?func=detail&aid=3442184&group_id=76834&atid=1205376] comment: note that there is also MA:0002849 synonym: "epiphyseal plate hypertrophic zone" EXACT [] synonym: "hypertrophic chondrocyte zone" RELATED [MP:0000165] synonym: "maturation zone" RELATED [MA:0002977] synonym: "zone of hypertrophic chondrocytes" RELATED [MA:0002977] xref: MA:0002977 is_a: UBERON:0006775 ! zone of epiphyseal plate [Term] id: UBERON:0006773 name: long bone epiphyseal plate ossification zone namespace: uberon def: "layer of the epiphyseal plate where new bone matrix is deposited[MP]." [MP:0006399] synonym: "epiphyseal plate ossification zone" EXACT [] is_a: UBERON:0006775 ! zone of epiphyseal plate [Term] id: UBERON:0006775 name: zone of epiphyseal plate namespace: uberon is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0002516 ! epiphyseal plate [Term] id: UBERON:0006776 name: annular epiphysis namespace: uberon def: "secondary growth centers occurring as rings at the periphery of the superior and inferior surfaces of the vertebral body." [http://medical-dictionary.thefreedictionary.com/epiphysis] comment: note that here epiphysis means deriving from a separate ossification center synonym: "anular epiphysis" EXACT [FMA:75792] xref: FMA:75792 is_a: UBERON:0005913 ! zone of bone organ [Term] id: UBERON:0006777 name: tectal plate namespace: uberon def: "embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )]" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=453] comment: The term \"tectal plate\" (or \"quadrigeminal plate\") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) synonym: "lamina quadrigemina" EXACT [FMA:77488, FMA:TA] synonym: "quadrigeminal plate" EXACT [FMA:77488] xref: FMA:77488 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006779 name: superficial white layer of superior colliculus namespace: uberon def: "superficial white matter layer of superior collilculus that consists mainly of axions from the optic nerve." [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina III of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris iii" EXACT [FMA:71112, FMA:TA] synonym: "layer III of superior colliculus" EXACT [FMA:71112] synonym: "optic layer" EXACT [FMA:71112] synonym: "optic layer of superior colliculus" EXACT [FMA:71112] synonym: "stratum opticum colliculi superioris" EXACT [FMA:71112, FMA:TA] xref: ABA:SCop xref: FMA:71112 is_a: UBERON:0006786 ! white matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus property_value: "spatially_disjoint_from" UBERON:0006120 property_value: "spatially_disjoint_from" UBERON:0006780 [Term] id: UBERON:0006780 name: zonal layer of superior colliculus namespace: uberon def: "a thin layer consisting of small myelinated axons together with marginal and horizontal cells." [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina I of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris i" EXACT [FMA:72406, FMA:TA] synonym: "layer I of superior colliculus" EXACT [FMA:72406] synonym: "stratum zonale of superior colliculus" EXACT [FMA:72406] xref: ABA:SCzo xref: FMA:72406 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus property_value: "spatially_disjoint_from" UBERON:0006120 property_value: "spatially_disjoint_from" UBERON:0006779 [Term] id: UBERON:0006782 name: stratum lemnisci of superior colliculus namespace: uberon xref: FMA:72408 is_a: UBERON:0006785 ! gray matter layer of superior colliculus [Term] id: UBERON:0006783 name: layer of superior colliculus namespace: uberon def: "The microstructure of the optic tectum / superior colliculus varies across species. As a general rule, there is always a clear distinction between superficial layers, which receive input primarily from the visual system and show primarily visual responses, and deeper layers, which receive many types of input and project to numerous motor-related brain areas. The distinction between these two zones is so clear and consistent that some anatomists have suggested that they should be considered separate brain structures. In mammals, neuroanatomists conventionally identify seven layers[WP]." [Wikipedia:Superior_colliculus#Neural_circuit] xref: NIF_GrossAnatomy:nlx_anat_1005033 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0006785 name: gray matter layer of superior colliculus namespace: uberon xref: FMA:77870 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006786 name: white matter layer of superior colliculus namespace: uberon xref: FMA:83899 xref: NIF_GrossAnatomy:birnlex_1023 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006787 name: middle white layer of superior colliculus namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "intermediate white layer" EXACT [FMA:71113] synonym: "intermediate white layer of superior colliculus" EXACT [FMA:71113] synonym: "lamina V of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris v" EXACT [FMA:71113, FMA:TA] synonym: "layer V of superior colliculus" EXACT [FMA:71113] synonym: "stratum album intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum medullare intermedium colliculi superioris" EXACT [FMA:71113, FMA:TA] xref: FMA:71113 xref: ZFA:0001351 is_a: UBERON:0006786 ! white matter layer of superior colliculus is_a: UBERON:0006792 ! intermediate layer of superior colliculus [Term] id: UBERON:0006788 name: middle gray layer of superior colliculus namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "intermediate gray layer" EXACT [FMA:72409] synonym: "intermediate grey layer of superior colliculus" EXACT [FMA:72409] synonym: "lamina IV of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris iv" EXACT [FMA:72409, FMA:TA] synonym: "layer IV of superior colliculus" EXACT [FMA:72409] synonym: "stratum griseum intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum griseum intermedium colliculi superioris" EXACT [FMA:72409, FMA:TA] xref: FMA:72409 xref: ZFA:0001350 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006792 ! intermediate layer of superior colliculus [Term] id: UBERON:0006789 name: deep gray layer of superior colliculus namespace: uberon synonym: "deep grey layer of superior colliculus" EXACT [FMA:72410] synonym: "lamina VI of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris vi" EXACT [FMA:72410, FMA:TA] synonym: "layer VI of superior colliculus" EXACT [FMA:72410] synonym: "stratum griseum profundum colliculi superioris" EXACT [FMA:72410, FMA:TA] synonym: "stratum griseum profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] xref: FMA:72410 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006793 ! deep layer of superior colliculus [Term] id: UBERON:0006790 name: deep white layer of superior colliculus namespace: uberon def: "deep white matter layer of superior collilculus that consists entirely of fibers." [Wikipedia:Superior_colliculus#Neural_circuit] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lamina VII of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris vii" EXACT [FMA:72416, FMA:TA] synonym: "layer VII of superior colliculus" EXACT [FMA:72416] synonym: "stratum album profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] xref: FMA:72416 xref: ZFA:0000494 is_a: UBERON:0006786 ! white matter layer of superior colliculus is_a: UBERON:0006793 ! deep layer of superior colliculus [Term] id: UBERON:0006791 name: superficial layer of superior colliculus namespace: uberon xref: BM:MB-Tec-SCS xref: ZFA:0000686 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006792 name: intermediate layer of superior colliculus namespace: uberon xref: BM:MB-Tec-SCI xref: ZFA:0000327 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006793 name: deep layer of superior colliculus namespace: uberon xref: BM:MB-Tec-SCD is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006794 name: visual processing part of nervous system namespace: uberon comment: This grouping class is primarily to accommodate GO subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "optic lobe" RELATED [GAID:1233] xref: GAID:1233 is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0006795 name: arthropod optic lobe namespace: uberon def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5] synonym: "optic lobe" RELATED SENSU [FBbt:00003701] xref: FBbt:00003701 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain relationship: develops_from UBERON:0001048 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! primordium relationship: part_of UBERON:0000914 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! organismal segment [Term] id: UBERON:0006796 name: cephalopod optic lobe namespace: uberon def: "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) ." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587] synonym: "optic lobe" RELATED SENSU [] is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0006798 name: efferent nerve namespace: uberon def: "A group of neurons that provides a nervous signal to a tissue." [AEO:JB] xref: AEO:0000202 xref: EHDAA2:0003231 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0006799 name: glandular epithelium namespace: uberon def: "Epithelium composed of secretory cells." [Online_Medical_Dictionary:http://cancerweb.ncl.ac.uk/] xref: BTO:0002991 xref: ncithesaurus:Glandular_Epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0006800 name: anatomical line namespace: uberon def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010267 xref: AEO:0000008 xref: BILA:0000008 xref: CARO:0000008 xref: EHDAA2:0003008 xref: FMA:9657 xref: HAO:0000008 xref: TGMA:0001828 xref: XAO:0004003 xref: ZFA:0001689 is_a: UBERON:0000015 ! anatomical boundary [Term] id: UBERON:0006801 name: head of humerus namespace: uberon def: "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb and fits into the socket joint of the olecranon process." [AAO:0000838] synonym: "eminentia capitata" RELATED [AAO:0000838] synonym: "humeral head" EXACT [FMA:13304] synonym: "radial condyle" RELATED [AAO:0000838] xref: AAO:0000838 xref: FMA:13304 xref: SCTID:181924000 xref: galen:HeadOfHumerus xref: ncithesaurus:Head_of_the_Humerus is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus [Term] id: UBERON:0006802 name: acetabular rim namespace: uberon def: "Cartilaginous ring that forms the entire acetabular margin." [AAO:0000864] xref: AAO:0000864 xref: FMA:16941 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001269 ! acetabular part of hip bone [Term] id: UBERON:0006803 name: obturator foramen namespace: uberon def: "The obturator foramen is the hole created by the ischium and pubis bones of the pelvis through which nerves and muscles pass." [Wikipedia:Obturator_foramen] synonym: "foramen obturatorium" EXACT [FMA:16999] xref: AAO:0000863 xref: FMA:16999 xref: SCTID:361777006 xref: ncithesaurus:Obturator_Foramen is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle [Term] id: UBERON:0006804 name: reticular tissue namespace: uberon def: "Loose connective tissue which consists of an irregular network of cells and reticular fibers and is spatially associated with myeloid and lymphoid cells. Examples: stroma of bone marrow, stroma of spleen, stroma of lymph node.[FMA]" [FMA:20116, FMA:FMA, Wikipedia:Reticular_fiber] synonym: "reticular connective tissue" EXACT [FMA:20116] synonym: "textus connectivus reticularis" EXACT [FMA:20116] xref: AAO:0000542 xref: FMA:20116 xref: SCTID:57987007 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001135 ! smooth muscle tissue [Term] id: UBERON:0006805 name: sternal end of clavicle namespace: uberon def: "Medial end of the clavicle, which usually lies on the ventral side of the epicoracoid cartilage, just posterior to the epicoracoid bridge." [AAO:0000812] synonym: "extremitas medialis" RELATED [AAO:0000812] synonym: "extremitas sternalis (Clavicula)" EXACT [FMA:23297] synonym: "medial end" RELATED [AAO:0000812] synonym: "medial end of clavicle" EXACT [FMA:23297] xref: AAO:0000812 xref: FMA:23297 xref: SCTID:181920009 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001105 ! clavicle [Term] id: UBERON:0006806 name: medial epicondyle of humerus namespace: uberon def: "The medial epicondyle of the humerus, larger and more prominent than the lateral epicondyle, is directed a little backward. In birds, where the arm is somewhat rotated compared to other tetrapods, it is called ventral epicondyle of the humerus. It gives attachment to the ulnar collateral ligament of the elbow-joint, to the Pronator teres, and to a common tendon of origin of some of the Flexor muscles of the forearm. The ulnar nerve runs in a groove on the back of this epicondyle[WP]. Rounded projection at the distal head of the humerus and medial to the humeral head, which serves as a place of attachment for the flexor muscles antogonistic to those that attach to the lateral epicondyle[AAO]." [AAO:0000782, Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "elbow pit" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "epicondylus medialis (Humerus)" EXACT [FMA:23441] synonym: "epicondylus medialis humeri" RELATED [AAO:0000782] synonym: "medial epicondyle" BROAD [AAO:0000782] synonym: "medial epicondyle of humerus" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "ulnar condyle of humerus" RELATED [http://www.termiumplus.gc.ca] synonym: "ventral epicondyle of humerus" RELATED SENSU [Wikipedia:Medial_epicondyle_of_the_humerus] xref: AAO:0000782 xref: FMA:23441 xref: SCTID:181929005 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 ! epicondyle relationship: part_of UBERON:0004404 ! distal epiphysis of humerus [Term] id: UBERON:0006807 name: lateral epicondyle of humerus namespace: uberon def: "The lateral epicondyle of the humerus is a small, tuberculated eminence, curved a little forward, and giving attachment to the radial collateral ligament of the elbow-joint, and to a tendon common to the origin of the Supinator and some of the Extensor muscles. In birds, where the arm is somewhat rotated compared to other tetrapods, it is termed dorsal epicondyle of the humerus[WP]. Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris[AAO]." [AAO:0000758, Wikipedia:Lateral_epicondyle_of_the_humerus] synonym: "dorsal epicondyle of the humerus" RELATED SENSU [Wikipedia:Lateral_epicondyle_of_the_humerus] synonym: "epicondylus lateralis (Humerus)" EXACT [FMA:23442] synonym: "epicondylus lateralis humeri" RELATED [AAO:0000758] xref: AAO:0000758 xref: FMA:23442 xref: SCTID:181933003 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 ! epicondyle relationship: part_of UBERON:0004404 ! distal epiphysis of humerus [Term] id: UBERON:0006809 name: supporting connective tissue namespace: uberon def: "Specialized connective tissue is a connective tissue, which consists of osteocytes and chondrocytes, the intercellular matrix of which is chondrified or calcified.[FMA]" [FMA:37374, FMA:FMA] is_obsolete: true comment: made obsolete because FMA:37374 is a General anatomical term rather than a true class in the FMA synonym: "specialized connective tissue" EXACT [FMA:37374] xref: AAO:0000571 xref: FMA:37374 [Term] id: UBERON:0006810 name: olecranon namespace: uberon def: "The olecranon is a large, thick, curved bony eminence of the forearm that projects behind the elbow. It is situated at the upper (proximal) end of the ulna, one of the two bones in the forearm. When the hand faces forward the olecranon faces towards the back (posteriorly). It is bent forward at the summit so as to present a prominent lip which is received into the olecranon fossa of the humerus in extension of the forearm. Its base is contracted where it joins the body and the narrowest part of the upper end of the ulna. Its posterior surface, directed backward, is triangular, smooth, subcutaneous, and covered by a bursa. Its superior surface is of quadrilateral form, marked behind by a rough impression for the insertion of the Triceps brachii; and in front, near the margin, by a slight transverse groove for the attachment of part of the posterior ligament of the elbow-joint. Its anterior surface is smooth, concave, and forms the upper part of the semilunar notch. Its borders present continuations of the groove on the margin of the superior surface; they serve for the attachment of ligaments, viz. , the back part of the ulnar collateral ligament medially, and the posterior ligament laterally. From the medial border a part of the Flexor carpi ulnaris arises; while to the lateral border the anconeus muscle is attached." [Wikipedia:Olecranon] synonym: "olecranon process" RELATED [Wikipedia:Olecranon] synonym: "ulnar process" RELATED [AAO:0000843] xref: AAO:0000843 xref: FMA:39795 xref: SCTID:181949001 xref: ncithesaurus:Olecranon is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna [Term] id: UBERON:0006811 name: occipital condyle namespace: uberon def: "The occipital condyles are undersurface facets of the occipital bone in vertebrates, which function in articulation with the superior facets of the atlas vertebra. The condyles are oval or reniform (kidney-shaped) in shape, and their anterior extremities, directed forward and medialward, are closer together than their posterior, and encroach on the basilar portion of the bone; the posterior extremities extend back to the level of the middle of the foramen magnum. The articular surfaces of the condyles are convex from before backward and from side to side, and look downward and lateralward. To their margins are attached the capsules of the atlantoC6ccipital articulations, and on the medial side of each is a rough impression or tubercle for the alar ligament. At the base of either condyle the bone is tunnelled by a short canal, the hypoglossal canal." [Wikipedia:Occipital_condyle] comment: birds have a single occipital condyle[WP] xref: AAO:0000330 xref: FMA:52861 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001693 ! exoccipital bone [Term] id: UBERON:0006812 name: mental foramen namespace: uberon def: "The mental foramen is one of two holes (\"foramina\") located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals." [Wikipedia:Mental_foramen] synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen] synonym: "mental foramina" EXACT PLURAL [OBOL:automatic] xref: AAO:0000298 xref: FMA:53171 xref: SCTID:244686000 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0006813 name: nasal skeleton namespace: uberon def: "Structural framework that provides support to the nasal sacs and ducts." [AAO:0000320] synonym: "skeleton of nose" EXACT [FMA:60116] xref: AAO:0000320 xref: FMA:60116 xref: SCTID:281486007 is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0006815 name: areolar connective tissue namespace: uberon def: "Loose connective tissue located at the outer and inner layers of organs. Examples: submucosal connective tissue, tunica adventitia of artery, papillary dermis, superficial fascia of dorsum of hand.[FMA]" [FMA:63897, FMA:FMA] comment: consider adding separate class for LCT synonym: "loose areolar connective tissue" EXACT [FMA:63897] synonym: "loose connective tissue" EXACT [AAO:0000027] xref: AAO:0000027 xref: FMA:63897 xref: SCTID:68477002 xref: ncithesaurus:Loose_Connective_Tissue is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000030 ! lamina propria [Term] id: UBERON:0006820 name: body of sternum namespace: uberon def: "The body of the sternum (gladiolus), considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [Wikipedia:Body_of_sternum] comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "gladiolus of sternum" EXACT [FMA:7487] synonym: "mesosternum" EXACT [FMA:7487] synonym: "sternal body" EXACT [FMA:7487] xref: AAO:0000939 xref: FMA:7487 xref: SCTID:361743001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0006821 name: cutaneous muscle namespace: uberon xref: AAO:0000119 xref: FMA:74996 xref: ncithesaurus:Cutaneous_Muscle is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: UBERON:0006822 name: proximal epiphysis of ulna namespace: uberon def: "The head of ulna presents an articular surface, part of which, of an oval or semilunar form, is directed downward, and articulates with the upper surface of the triangular articular disk which separates it from the wrist-joint; the remaining portion, directed lateralward, is narrow, convex, and received into the ulnar notch of the radius." [Wikipedia:Head_of_ulna] synonym: "caput ulnae" EXACT [FMA:33751, FMA:TA] synonym: "head of ulna" EXACT [FMA:33751] synonym: "proximal end of ulna" EXACT [FMA:33751] synonym: "upper end of ulna" EXACT [FMA:33751] xref: FMA:33751 xref: SCTID:304590006 xref: galen:HeadOfUlna is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004386 ! epiphysis of ulna [Term] id: UBERON:0006828 name: trabecula carnea of atrium namespace: uberon def: "the supporting bundles of muscular fibers lining the walls of the atria[MP]." [MP:0010581] comment: Dubious: Not present in any AO. Note that WP states that trabecular carnea are ventricular and 'They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only' is_a: UBERON:0002511 ! trabecula carnea [Term] id: UBERON:0006829 name: remnant of left anterior vena cava namespace: uberon def: "." [Wikipedia:Persistent_left_superior_vena_cava] comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). is_a: UBERON:0001638 ! vein is_a: UBERON:0004148 ! coronary vein relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0006831 name: pre-tracheal muscle namespace: uberon synonym: "pretracheal muscle" EXACT [MA:0001798] xref: EMAPA:25142 xref: MA:0001798 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: UBERON:0006832 name: lumen of open tracheal system trachea namespace: uberon synonym: "tracheal lumen" RELATED SENSU [FBbt:00007410] xref: FBbt:00007410 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0006833 name: lumen of trachea namespace: uberon synonym: "lumen of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "tracheal lumen" EXACT [FMA:7469] xref: FMA:7469 xref: SCTID:197486000 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0006834 name: uterus or analog namespace: uberon def: "An internal female reproductive organ that is the site of embryo development." [] subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "uterus" BROAD SENSU [FBbt:00004924] xref: FBbt:00004924 xref: TADS:0000421 xref: WBbt:0006760 is_a: UBERON:0003975 ! internal female genitalia relationship: part_of UBERON:0000474 ! female reproductive system relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm [Term] id: UBERON:0006835 name: arthropod oviduct namespace: uberon def: "A tube that connects ovary to the uterus." [TADS:0000415] xref: FBbt:00004911 xref: TADS:0000415 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000474 ! female reproductive system relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm [Term] id: UBERON:0006836 name: medial tibial tarsal bone namespace: uberon comment: AAO: One of two element that constitute the basal row of tarsals. The tibiale constitutes the postaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the fibulare. todo - check grouping synonym: "tibiale" RELATED [AAO:0000912, MA:0001350] xref: AAO:0000912 xref: MA:0001350 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0006837 name: tegmen tympani namespace: uberon def: "The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] ." [http://education.yahoo.com/reference/gray/subjects/subject/230] comment: todo - check AAO; grouping is made on basis of related synonym. Crista parotica: seems to be the same as the crista prootica. However, since this lateral ridge of the otic capsule is frequently formed by the opisthotic, rather than the prootic, this may be a better name.; Crista prootica: a ledge or ridge which elaborates the dorsal surface of the prootic or, more generally, the roof of the otic capsule, laterally. The crista may extend posteriorly & laterally, continuous with the paroccipital process, and/or anteriorly or anteroventrally to protect cranial nerve foramina and form part of the fenestra ovalis/vestibuli. In basal tetrapodomorphs and tetrapods, the crista prootica forms the floor of the posttemporal fenestra. See The Prootic. In many tetrapods, the crista prootica is not ossified, or incompletely ossified. However, in frogs, the crista is the main strut joining the skull roofing bones (frontoparietals) with the squamosals. The crista prootica has a similarly expanded role in mammals where it forms an important part of the epitympanic recess and anchors the tympanohyal.[http://www.palaeos.com] subset: dubious_grouping ! Indicates that subclasses in AOs may be inappropriately linked synonym: "crista parotica" RELATED HOMOLOGY [AAO:0000116] synonym: "crista prootica" RELATED HOMOLOGY [AAO:0000116, http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html] synonym: "paries tegmentalis cavi tympani" EXACT [FMA:56002, FMA:TA] synonym: "processus muscularis capsulae auditivae" RELATED [AAO:0000116] synonym: "processus squamosus" RELATED HOMOLOGY [AAO:0000116] synonym: "tegmental roof of tympanic cavity" EXACT [FMA:56002] synonym: "tegmental wall of tympanic cavity" EXACT [FMA:56002] xref: AAO:0000116 xref: FMA:56002 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0006838 name: anterior ramus of spinal nerve namespace: uberon def: "The ventral ramus (anterior ramus, anterior branch, anterior divisions of the spinal nerves) supply the antero-lateral parts of the trunk, and the limbs; they are for the most part larger than the posterior divisions. In the thoracic region they remain distinct from each other and each innervates a narrow strip of muscle and skin along the sides, chest, ribs, and abdominal wall. These rami are called the intercostal nerves. In regions other than the thoracic, ventral rami converge with each other to form networks of nerves called nerve plexuses. Within each plexus, fibers from the various ventral rami branch and become redistributed so that each nerve exiting the plexus has fibers from several different spinal nerves. One advantage to having plexuses is that damage to a single spinal nerve will not completely paralyze a limb. There are four main plexuses formed by the ventral rami: The cervical plexus contains ventral rami from spinal nerves C1-C5. Branches of the cervical plexus, which include the phrenic nerve, innervate muscles of the neck, the diaphragm, and the skin of the neck and upper chest. The brachial plexus contains ventral rami from spinal nerves C5-T1. This plexus innervates the pectoral girdle and upper limb. The lumbar plexus contains ventral rami from spinal nerves L1-L4. The sacral plexus contains ventral rami from spinal nerves L4-S4. The lumbar and sacral plexuses innervate the pelvic girdle and lower limbs. The Ventral rami, including the sinuvertebral nerve branches, supply structures anterior to the facet joint, including the vertebral bodies, the discs and their ligaments and joints other spinal nerves to form the lumbo-sacral plexus." [Wikipedia:Anterior_ramus_of_spinal_nerve] synonym: "anterior primary ramus of spinal nerve" EXACT [FMA:5982] synonym: "ramus anterior" BROAD [FMA:5982] synonym: "ventral ramus of spinal nerve" EXACT [FMA:5982] xref: FMA:5982 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001780 ! spinal nerve [Term] id: UBERON:0006839 name: posterior ramus of spinal nerve namespace: uberon def: "The posterior (or dorsal) branches (or divisions) of the spinal nerves are as a rule smaller than the anterior divisions. They are also referred to as the dorsal rami. They are directed backward, and, with the exceptions of those of the first cervical, the fourth and fifth sacral, and the coccygeal, divide into medial and lateral branches for the supply of the muscles and skin of the posterior part of the trunk. Shortly after a spinal nerve exits the intervertebral foramen, it branches into the dorsal ramus, ventral ramus, and rami communicantes. Each of these latter three structures carries both sensory and motor information. Because each spinal nerve carries both sensory and motor information, spinal nerves are referred to as bmixed nerves. b Dorsal rami carry visceral motor, somatic motor, and sensory information to and from the skin and muscles of the back. Dorsal rami remain distinct from each other, and each innervates a narrow strip of skin and muscle along the back, more or less at the level from which the ramus leaves the spinal nerve. The smaller, posteriorly-directed major terminal branch (with the ventral primary ramus) of all 31 pairs of mixed spinal nerves, formed at the intervertebral foramen and turning abruptly posteriorly to divide into lateral and medial branches, both of which will supply the deep (true) muscles of the back. The medial branch (rami medialis) of the dorsal primary ramus also supplies articular branches to the zygopophyseal joints and the periosteum of the vertebral arch. In the neck and upper back, the medial branch continues through the deep and superficial back muscles to supply overlying skin; in the lower back, the lateral branch does this. Nomina Anatomica lists dorsal primary rami as \"rami dorsales\" for each group of spinal nerves: 1) cervical (nervorum cervicalium), 2) thoracic (nervorum thoracicorum), 3) lumbar (nervorum lumbalium), 4) sacral (nervorum sacralium), and 5) coccygeal (nervi coccygei). Synonyms: ramus dorsalis nervorum spinalium, ramus dorsalis, rami posteriores nervorum spinalium, dorsal branch, posterior primary division." [Wikipedia:Posterior_ramus_of_spinal_nerve] synonym: "dorsal ramus" EXACT [FMA:5983] synonym: "dorsal ramus of spinal nerve" EXACT [FMA:5983] synonym: "posterior primary ramus" EXACT [FMA:5983] synonym: "ramus posterior" BROAD [FMA:5983] xref: AAO:0010800 xref: FMA:5983 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001780 ! spinal nerve [Term] id: UBERON:0006840 name: nucleus of lateral lemniscus namespace: uberon comment: not clear if the ZFA class denotes the same entity; check relationship to midbrain tegmentum - this leads to inconsistency with ABA. The FMA class should represnet the grouping, but there is no FMA class for the singular at the moment subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral lemniscus nuclei" EXACT [ZFA:0000380] synonym: "nuclei lemnisci lateralis" EXACT [FMA:84025, FMA:TA] synonym: "nuclei of lateral lemniscus" RELATED [FMA:84025] xref: ABA:NLL xref: EV:0100265 xref: FMA:84025 xref: SCTID:369023003 xref: ZFA:0000380 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009661 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! midbrain nucleus relationship: part_of UBERON:0001943 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! midbrain tegmentum property_value: "spatially_disjoint_from" UBERON:0002128 property_value: "spatially_disjoint_from" UBERON:0002597 property_value: "spatially_disjoint_from" UBERON:0007634 [Term] id: UBERON:0006841 name: central vein of liver namespace: uberon def: "Vein that is central to a lobule in the liver." [ZFA:0005168] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "terminal branch of hepatic vein" EXACT [FMA:17544] synonym: "terminal hepatic venule" EXACT [FMA:17544] synonym: "vena centralis (Hepar)" EXACT [FMA:17544] xref: FMA:17544 xref: SCTID:272023004 xref: ZFA:0005168 is_a: UBERON:0001143 ! hepatic vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0006842 name: lymphatic capillary namespace: uberon def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells." [ZFA:0005252] comment: todo - check superclass subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lymph capillary" EXACT [FMA:5028] xref: FMA:5028 xref: ZFA:0005252 xref: ncithesaurus:Lymphatic_Capillary is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0004536 ! lymph vasculature [Term] id: UBERON:0006843 name: root of cranial nerve namespace: uberon comment: Editor note: recommend asserting under this class rather than relying on inference, as relations may change subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "cranial nerve root" EXACT [FMA:52609] synonym: "cranial neural root" EXACT [FMA:52609] xref: FMA:52609 xref: SCTID:280161004 xref: ZFA:0001663 is_a: UBERON:0002211 ! nerve root [Term] id: UBERON:0006844 name: cusp of tooth namespace: uberon def: "Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth." [ZFA:0005434] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "tooth cusp" EXACT [FMA:56481] xref: FMA:56481 xref: SCTID:362107000 xref: ZFA:0005434 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003675 ! tooth crown [Term] id: UBERON:0006845 name: abductor muscle namespace: uberon def: "A muscle that moves a body part away from the sagittal plane/midline of the body[ZFA]. For example, the abductor muscles of the legs spread the legs away from the midline and away from one another. An abductor muscle opposes an adductor muscle[BTO]." [ZFA:0005269] comment: note that in FMA the Adbuctor muscle is a subclass of Relation. It's unclear what this actually means, we leave it here as a grouping for now subset: grouping_class ! Subset consisting of classes creating for grouping purposes xref: BTO:0004642 xref: FMA:74997 xref: ZFA:0005269 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0006846 name: groove namespace: uberon def: "Anatomical line that delineates a furrow or depression in an organ or tissue." [ZFA:0001690] subset: grouping_class ! Subset consisting of classes creating for grouping purposes xref: AAO:0010276 xref: AEO:0000161 xref: EHDAA2:0003161 xref: FMA:75037 xref: ZFA:0001690 is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0006847 name: cerebellar commissure namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "commissura cerebelli" EXACT [ZFA:0000490] xref: FMA:77522 xref: ZFA:0000490 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0006848 name: posterior pretectal nucleus namespace: uberon def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000631] subset: dubious_grouping ! Indicates that subclasses in AOs may be inappropriately linked subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caudal pretectal nuclei" EXACT [ZFA:0000631] synonym: "posterior pretectal nucleus" EXACT [ZFA:0000631] xref: ABA:PPT xref: FMA:84355 xref: ZFA:0000631 is_a: UBERON:0006569 ! diencephalic nucleus property_value: "spatially_disjoint_from" UBERON:0002565 property_value: "spatially_disjoint_from" UBERON:0002711 property_value: "spatially_disjoint_from" UBERON:0002996 [Term] id: UBERON:0006849 name: scapula namespace: uberon def: "In tetrapods: bone that connects the humerus (upper arm bone) with the clavicle. In teleosts: Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:curator] comment: note we create a specific subclass for tetrapod scapula synonym: "scapulae" EXACT PLURAL [ZFA:0000583] xref: MESH:A.02.835.232.087.783 xref: SCTID:302517007 xref: TAO:0000583 xref: ZFA:0000583 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: UBERON:0006850 name: tetrapod pectoral girdle namespace: uberon is_obsolete: true [Term] id: UBERON:0006851 name: renal cortex peritubular capillary namespace: uberon xref: MA:0002590 is_a: UBERON:0005272 ! peritubular capillary [Term] id: UBERON:0006852 name: glomerular visceral epithelium namespace: uberon synonym: "podocyte layer" RELATED [MA:0002607] xref: EMAPA:28254 xref: MA:0002607 is_a: UBERON:0004188 ! glomerular epithelium relationship: part_of UBERON:0000074 ! renal glomerulus [Term] id: UBERON:0006853 name: renal cortex tubule namespace: uberon xref: EMAPA:18976 xref: MA:0002609 is_a: UBERON:0007685 ! region of nephron tubule relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0006854 name: distal straight tubule postmacula segment namespace: uberon def: "." [https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376] synonym: "cortical thick ascending limb of Henle's loop" EXACT [MA:th] synonym: "kidney cortex loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "renal cortex loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "renal cortex thick ascending limb" EXACT [MA:th] xref: EMAPA:28402 xref: MA:0002615 is_a: UBERON:0006853 ! renal cortex tubule is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0008408 ! distal tubular epithelium relationship: part_of UBERON:0001291 ! thick ascending limb of loop of Henle relationship: part_of UBERON:0006853 ! renal cortex tubule [Term] id: UBERON:0006855 name: ureter muscle layer namespace: uberon synonym: "muscular coat of ureter" EXACT [FMA:15893] synonym: "muscular layer of ureter" EXACT [FMA:15893] synonym: "muscularis of ureter" EXACT [FMA:15893] synonym: "tunica muscularis (ureter)" EXACT [FMA:TA] synonym: "tunica muscularis ureteris" EXACT [FMA:TA] xref: FMA:15893 xref: MA:0002654 xref: SCTID:3563003 is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0006660 ! muscle layer relationship: part_of UBERON:0009916 ! wall of ureter [Term] id: UBERON:0006856 name: interrenal gland namespace: uberon def: "Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney." [BTO:0000808, doi:10.1242/dev.00427] comment: Editor notes: check isa - not a true gland? There are two types of interrenal cells identified (1) The noradrenaline type, which contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. (2) The adrenaline type, in which the vesicles are smaller and contain homogenous electron-lucent granules that are separated from the vesicular membrane by a visible -- halo http://dev.biologists.org/content/130/10/2107.full subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "interrenal" RELATED [http://dev.biologists.org/content/130/10/2107.full] synonym: "interrenal bodies" RELATED [] synonym: "interrenal body" RELATED [BTO:0000808] synonym: "interrenal gland" RELATED [] synonym: "interrenal tissue" RELATED [] xref: BTO:0000808 xref: GAID:1227 xref: MESH:A.13.530 xref: VHOG:0001141 xref: ZFA:0001345 is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005058 ! hemolymphoid system gland is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0006858 ! adrenal/interrenal gland relationship: part_of UBERON:0007132 ! head kidney property_value: "homologous_to" UBERON:0001235 [Term] id: UBERON:0006857 name: interrenal primordium namespace: uberon comment: Development notes: splanchnic mesoderm adjacent to urogenital ridge. Editor notes: consider ceding to TAO/ZFA - however, structure also present in cyclostomes xref: TAO:0001346 xref: ZFA:0001346 xref: ZFIN:ZDB-ANAT-060131-24 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006858 name: adrenal/interrenal gland namespace: uberon def: "This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO]" [GO:0030325] comment: Editor notes: keep this grouping class so long as it is required for GO subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "adrenal gland - interrenal gland" EXACT [VHOG:0001141] synonym: "adrenal gland/interrenal tissue" EXACT [] xref: VHOG:0001141 is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen organ relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0006859 name: swim bladder bud namespace: uberon def: "Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder." [ZFIN:ZDB-PUB-090511-18, ZFIN:ZDB-PUB-100202-11] xref: TAO:0005335 xref: ZFA:0005335 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006860 name: swim bladder namespace: uberon alt_id: UBERON:0008980 def: "A thin membranous, sometimes alveolated sac in the dorsal portion of the abdominal cavity. Contains a varying mixture of gases, not identical to the composition of air. May be one, two or three chambered. May be connected to the gut by a tube, the ductus pneumaticus (then called physostomous) or unconnected (then called physoclistous). May function as one or more of:- hydrostatic organ, sound producing organ, sound receptor, respiratory organ. Found in Actinopterygii. Often lacking in bottom fishes." [http://www.briancoad.com/Dictionary/S.htm] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "gas bladder" EXACT [ZFA:0000076, http://www.briancoad.com/Dictionary/S.htm] xref: BTO:0001607 xref: BTO:0002148 xref: EFO:0003483 xref: SCTID:64748009 xref: TAO:0000076 xref: ZFA:0000076 xref: ZFIN:ZDB-ANAT-010921-495 is_a: UBERON:0000489 ! cavitated compound organ relationship: part_of UBERON:0002323 ! body cavity property_value: "homologous_to" UBERON:0002048 [Term] id: UBERON:0006861 name: diaphysis proper namespace: uberon def: "Subdivision of long bone which forms the part of the bone between two metaphyses." [UBERON:cjm] comment: The MA class is placed here because we assume it means diaphysis proper, because in MA epiphysis is not part of MA:0002803 synonym: "body proper of long bone" EXACT [FMA:32688] synonym: "long bone diaphysis" RELATED INCONSISTENT [MA:0002803] synonym: "shaft proper of long bone" EXACT [FMA:32688] xref: FMA:32688 xref: MA:0002803 is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004769 ! diaphysis [Term] id: UBERON:0006862 name: diaphysis of femur namespace: uberon synonym: "body of femur" EXACT [FMA:32847] synonym: "corpus femoris" EXACT [FMA:32847, FMA:TA] synonym: "femoral diaphysis" EXACT [FMA:32847] synonym: "shaft of femur" EXACT [FMA:32847] xref: FMA:32847 xref: SCTID:182048009 is_a: UBERON:0004769 ! diaphysis [Term] id: UBERON:0006863 name: proximal metaphysis of femur namespace: uberon xref: FMA:32878 is_a: UBERON:0004378 ! proximal metaphysis is_a: UBERON:0006865 ! metaphysis of femur [Term] id: UBERON:0006864 name: distal metaphysis of femur namespace: uberon xref: FMA:32881 is_a: UBERON:0004377 ! distal metaphysis is_a: UBERON:0006865 ! metaphysis of femur [Term] id: UBERON:0006865 name: metaphysis of femur namespace: uberon synonym: "femoral metaphysis" EXACT [FMA:32875] xref: FMA:32875 is_a: UBERON:0001438 ! metaphysis [Term] id: UBERON:0006866 name: terminal part of digestive tract namespace: uberon xref: FBbt:00005756 xref: WBbt:0005773 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0006867 name: anal part of perineum namespace: uberon def: "The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]." [Wikipedia:Anal_triangle] synonym: "anal region" BROAD [FMA:20347] synonym: "anal triangle" EXACT [FMA:20347] synonym: "regio analis" EXACT [FMA:20347, FMA:TA] xref: FMA:20347 xref: SCTID:243995004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001353 ! anal region relationship: part_of UBERON:0002356 ! perineum [Term] id: UBERON:0006868 name: seminal fluid secreting gland namespace: uberon subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: FBbt:00004958 xref: WBbt:0006870 is_a: UBERON:0005399 ! male reproductive gland relationship: part_of UBERON:0006947 ! male genital duct relationship: develops_from UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! ectoderm [Term] id: UBERON:0006869 name: electric organ namespace: uberon def: "A specialized tract of tissue (as in the electric eel) in which electricity is generated." [BTO:0000376, Wikipedia:Electric_organ] comment: todo - request go term for function assignment xref: BTO:0000376 xref: GAID:1210 xref: MESH:A.13.332 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:0006870 name: endostyle namespace: uberon def: "An endostyle is a longitudinal ciliated groove on the ventral wall of the pharynx which produces mucus to gather food particles. It is found in urochordates and cephalochordates, and in the larvae of lampreys. It aids in transporting food to the esophagus. It is also called the hypopharyngeal groove. The endostyle in larval lampreys (ammocetes) metamorphoses into the thyroid gland in adults, and is regarded as being homologous to the thyroid gland in vertebrates. However, Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates. Since the endostyle is found in the three branches of chordates, it is presumed to have arisen in the common ancestor of these taxa, along with a shift to internal feeding for extracting suspended food from the water." [Wikipedia:Endostyle] comment: Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates[WP]. synonym: "hypopharyngeal groove" RELATED [BTO:0003173] xref: ANISEED:1235299 xref: BTO:0003173 is_a: UBERON:0006846 ! groove relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0006562 ! pharynx [Term] id: UBERON:0006871 name: footplate namespace: uberon alt_id: UBERON:0004343 xref: EHDAA:5143 xref: EHDAA:6096 xref: EMAPA:17249 xref: ncithesaurus:Foot_Plate is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005418 ! hindlimb bud [Term] id: UBERON:0006872 name: handplate apical ectodermal ridge namespace: uberon xref: EHDAA2:0000729 xref: EMAPA:17247 is_a: UBERON:0005421 ! anterior limb/fin apical ectodermal ridge [Term] id: UBERON:0006875 name: handplate namespace: uberon synonym: "hand plate" EXACT [] xref: EHDAA:4194 xref: EHDAA:6242 xref: EMAPA:17245 xref: ncithesaurus:Hand_Plate is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005417 ! forelimb bud [Term] id: UBERON:0006876 name: vasculature of organ namespace: uberon synonym: "organ vasculature" EXACT [FMA:74612] synonym: "set of blood vessels of organ" EXACT [FMA:74612] xref: FMA:74612 is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0006877 name: vasculature of liver namespace: uberon comment: the EHDAA2 term and the FMA term may not be exact equivalents - check synonym: "hepatic vasculature" EXACT [FMA:73748] synonym: "liver vascular system" RELATED [EHDAA2:0003454] xref: EHDAA2:0003454 xref: FMA:73748 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0006878 name: decidua parietalis namespace: uberon def: "The part of the decidua in the pregnant human female lining the uterus." [Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/] synonym: "decidua vera" RELATED [BTO:0000334] xref: BTO:0000334 xref: FMA:86479 xref: SCTID:255413006 xref: ncithesaurus:Decidua_Parietalis is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002450 ! decidua [Term] id: UBERON:0006904 name: mesenchyme derived from head mesoderm namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "head mesenchyme from head mesoderm" EXACT [EHDAA2:0001118] synonym: "mesenchyme derived from head mesoderm" EXACT [EHDAA:1057] xref: EFO:0003603 xref: EHDAA2:0001118 xref: EHDAA:655 xref: EMAPA:16099 xref: VHOG:0000185 xref: ZFA:0000998 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005253 ! head mesenchyme [Term] id: UBERON:0006905 name: mandibular process mesenchyme namespace: uberon synonym: "mesenchyme of mandibular process" EXACT [EMAPA:17357] synonym: "mesenchyme of mandibular prominence" EXACT [UBERON:cjm] xref: EHDAA2:0001062 xref: EHDAA:5861 xref: EHDAA:5873 xref: EMAPA:17357 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0006906 name: ala of nose namespace: uberon def: "The lateral surface of the external nose ends below in a rounded eminence, the wing of the nose. It is elevated by the Levator labii superioris alaeque nasi muscle[WP]. the tissue comprising the lateral boundary of the nose, inferiorly, surrounding the naris[EoM]." [Wikipedia:Ala_of_nose, http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full] synonym: "ala nasi" RELATED [Wikipedia:Ala_of_nose] synonym: "ala of the nose" RELATED [Wikipedia:Ala_of_nose] synonym: "nasal ala" EXACT [FMA:59519] synonym: "wing of nose" RELATED [Wikipedia:Ala_of_nose] synonym: "wing of the nose" RELATED [Wikipedia:Ala_of_nose] synonym: "wings of the nose" RELATED [Wikipedia:Ala_of_nose] xref: FMA:59519 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0006907 name: slow muscle tissue namespace: uberon def: "The darker-colored muscle tissue of some mammals, composed of slow twitch muscle fibers." [BTO:0002317] comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992) synonym: "red muscle" RELATED [BTO:0002317] synonym: "slow muscle" EXACT [BTO:0002317] synonym: "slow skeletal muscle tissue" EXACT [] xref: BTO:0002317 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0006908 name: fast muscle tissue namespace: uberon def: "The paler-colored muscle tissue of some mammals, composed of fast twitch muscle fibers." [BTO:0002318] comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992) synonym: "fast muscle" EXACT [BTO:0002318] synonym: "fast skeletal muscle tissue" EXACT [] synonym: "white muscle" RELATED [BTO:0002318] xref: BTO:0002318 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0006909 name: lumen of gut namespace: uberon synonym: "digestive tract lumen" EXACT [UBERON:cjm] synonym: "gut cavity" EXACT [BTO:0000349] synonym: "gut lumen" EXACT [FMA:45677] synonym: "lumen of alimentary tract" EXACT [UBERON:cjm] synonym: "lumen of digestive tract" EXACT [UBERON:cjm] xref: BTO:0000349 xref: FMA:45677 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0006911 name: digestive system fluid or secretion namespace: uberon xref: BTO:0000346 xref: MA:0002512 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006912 name: urinary bladder muscularis mucosa namespace: uberon synonym: "muscularis mucosa of bladder " BROAD [EMAPA:28619] synonym: "muscularis mucosa of urinary bladder " EXACT [OBOL:automatic] xref: EMAPA:28619 xref: MA:0002490 xref: ncithesaurus:Bladder_Muscularis_Mucosa is_a: UBERON:0004228 ! urinary bladder smooth muscle is_a: UBERON:0006676 ! muscularis mucosa relationship: part_of UBERON:0001261 ! lamina propria of urinary bladder [Term] id: UBERON:0006913 name: lip epithelium namespace: uberon xref: BTO:0004468 xref: ZFA:0005334 is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0006914 name: squamous epithelium namespace: uberon def: "Epithelium composed of flattened platelike cells." [Dorlands_Medical_Dictionary:MerckSource] xref: BTO:0002072 xref: SCTID:40118003 xref: ncithesaurus:Squamous_Epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0006915 name: stratified squamous epithelium namespace: uberon def: "Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]" [FMA:45563] synonym: "epithelium stratificatum squamosum" EXACT [FMA:45563] xref: FMA:45563 xref: ncithesaurus:Stratified_Squamous_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0006914 ! squamous epithelium [Term] id: UBERON:0006916 name: non-keratinized epithelium of tongue namespace: uberon xref: FMA:62130 is_a: UBERON:0006919 ! tongue squamous epithelium [Term] id: UBERON:0006918 name: parakeratinized epithelium of tongue namespace: uberon xref: FMA:74908 is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0003357 ! epithelium of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006919 name: tongue squamous epithelium namespace: uberon comment: note this is a singleton subclass of tongue epithelium in MA synonym: "squamous epithelium of tongue" EXACT [OBOL:automatic] xref: MA:0002786 is_a: UBERON:0003357 ! epithelium of tongue is_a: UBERON:0006914 ! squamous epithelium [Term] id: UBERON:0006920 name: esophagus squamous epithelium namespace: uberon comment: MA introduces basal and squamous subtypes of esophagus epithelium; consider adding the FMA class 'epithelium of esophagus' here, because it is classified as squamous. BTO also has a singleton subclass synonym: "esophageal squamous epithelium" RELATED [OBOL:automatic] synonym: "squamous epithelium of esophagus" RELATED [OBOL:automatic] synonym: "squamous oesophageal epithelium" RELATED [MA:0001567] xref: BTO:0003635 xref: MA:0001567 xref: ncithesaurus:Esophageal_Squamous_Epithelium is_a: UBERON:0001976 ! epithelium of esophagus is_a: UBERON:0006914 ! squamous epithelium [Term] id: UBERON:0006921 name: stomach squamous epithelium namespace: uberon xref: MA:0001611 is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0001276 ! epithelium of stomach [Term] id: UBERON:0006922 name: cervix squamous epithelium namespace: uberon xref: MA:0001725 xref: ncithesaurus:Cervix_Squamous_Epithelium is_a: UBERON:0004801 ! cervix epithelium is_a: UBERON:0006914 ! squamous epithelium [Term] id: UBERON:0006923 name: vagina squamous epithelium namespace: uberon comment: note that this is a singleton subclass of vagina epithelium in MA synonym: "vaginal squamous epithelium" EXACT [] xref: MA:0001731 xref: ncithesaurus:Vaginal_Squamous_Epithelium is_a: UBERON:0001344 ! epithelium of vagina is_a: UBERON:0006915 ! stratified squamous epithelium [Term] id: UBERON:0006924 name: stomach glandular epithelium namespace: uberon def: "A glandular epithelium that lines the stomach. The stomach's glandular epithelium is characterized by the presence of gastric glands." [ISBN10:0073040584] comment: Editor notes: we follow Kardong in treating the glandular epithelium as a distinct entity, and thus as an epithelium which has glands; FMA has 'epithelium of gastric gland', which is part of the gastric gland. Consider also: stomach glandular region as a part-of parent synonym: "epithelium of gastric gland" NARROW [FMA:63458] xref: FMA:63458 xref: MA:0002784 is_a: UBERON:0001276 ! epithelium of stomach is_a: UBERON:0006929 ! glandular columnar epithelium relationship: part_of UBERON:0006931 ! stomach glandular region mucosa [Term] id: UBERON:0006925 name: digestive gland namespace: uberon def: "A gland, such as the liver or pancreas, that secretes into the alimentary canal substances necessary for digestion." [The_American_Heritage_Dictionary_of_the_English_Language:Fourth_Edition._2000.] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "digestive system gland" EXACT [AAO:0000130] xref: AAO:0000130 xref: BTO:0000345 is_a: UBERON:0002368 ! endocrine gland [Term] id: UBERON:0006929 name: glandular columnar epithelium namespace: uberon def: "Simple columnar epithelium that constitutes the secretory part of a gland. Examples: epithelium of stomach, luminal epithelium of lactiferous duct.[FMA]" [FMA:64800, FMA:FMA] xref: FMA:64800 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0006799 ! glandular epithelium [Term] id: UBERON:0006930 name: glandular cuboidal epithelium namespace: uberon xref: FMA:66809 is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0006799 ! glandular epithelium [Term] id: UBERON:0006931 name: stomach glandular region mucosa namespace: uberon xref: MA:0001614 is_a: UBERON:0001199 ! mucosa of stomach relationship: part_of UBERON:0002100 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! trunk [Term] id: UBERON:0006932 name: vestibular epithelium namespace: uberon synonym: "epithelium of vestibular labyrinth" EXACT [OBOL:automatic] synonym: "inner ear vestibular component epithelium" EXACT [RETIRED_EHDAA2:0000834] synonym: "vestibular sensory epithelium" EXACT [FMA:75606] xref: FMA:75606 xref: MA:0002892 xref: RETIRED_EHDAA2:0000834 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006934 ! sensory epithelium is_a: UBERON:0006937 ! inner ear epithelium [Term] id: UBERON:0006934 name: sensory epithelium namespace: uberon def: "Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue." [BTO:0000314] comment: note that the definition sourced from Dorlands say 'simple columnar', but FMA says atypical synonym: "neuroepithelium" RELATED INCONSISTENT [BTO:0000314] xref: FMA:62410 xref: SCTID:309045006 is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0006935 name: crista ampullaris neuroepithelium namespace: uberon synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636] xref: FMA:75636 xref: MA:0002870 is_a: UBERON:0006932 ! vestibular epithelium relationship: part_of UBERON:0004721 ! crista ampullaris [Term] id: UBERON:0006936 name: thymus subcapsular epithelium namespace: uberon comment: todo - check whether this is part of the thymus or borders it xref: MA:0000769 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0003846 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! thymus epithelium [Term] id: UBERON:0006937 name: inner ear epithelium namespace: uberon xref: MA:0001189 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0006938 name: pinna surface epithelium namespace: uberon xref: EHDAA2:0001470 xref: EHDAA:8983 xref: EMAPA:17592 xref: VHOG:0000632 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0006946 name: efferent duct namespace: uberon def: "The efferent ducts (or efferent ductules or ductuli efferentes) connect the rete testis with the initial section of the epididymis. The ductuli are unilaminar and composed of columnar ciliated and non-ciliated (absorptive) cells. The ciliated cells serve to stir the luminal fluids, possibly to help ensure homogeneous absorption of water from the fluid produced by the testis, which results in an increase in the concentration of luminal sperm. The epithelium is surrounded by a band of smooth muscle that helps to propel the sperm toward the epididymis." [Wikipedia:Efferent_ducts] comment: AO notes: Check EMAPA. Taxon notes: There are two basic designs for efferent ductule structure: a) multiple entries into the epididymis, as seen in most large mammals. In humans and other large mammals, there are approximately 15-20 efferent ducts, which also occupy nearly one third of the head of the epididymis. b) single entry, as seen in most small animals such as rodents, whereby the 3-6 ductules merge into a single small ductule prior to entering the epididymis synonym: "ductuli efferentes testis" RELATED [Wikipedia:Efferent_ducts] synonym: "efferent ductule" EXACT [FMA:19081, Wikipedia:Efferent_ducts] synonym: "vasa efferentia" RELATED [AAO:0010532, Wikipedia:Efferent_ducts] xref: AAO:0010532 xref: EMAPA:18993 xref: FMA:19081 xref: MA:0000398 xref: ncithesaurus:Efferent_Ductule is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0006947 ! male genital duct [Term] id: UBERON:0006947 name: male genital duct namespace: uberon alt_id: UBERON:0010140 def: "A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [UBERON:cjm] comment: Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "sperm duct" EXACT [ZFA:0001268] xref: FMA:55678 xref: ZFA:0001268 is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0004054 ! internal male genitalia [Term] id: UBERON:0006948 name: efferent duct epithelium namespace: uberon synonym: "epithelium of efferent ductule of testis" EXACT [FMA:19195] xref: FMA:19195 xref: MA:0001734 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0006949 name: cervical loop namespace: uberon def: "The cervical loop is the location on an enamel organ in a developing tooth where the outer enamel epithelium and the inner enamel epithelium join. The cervical loop is a histologic term indicating a specific epithelial structure at the apical side of the tooth germ, consisting of loosely aggregated stellate reticulum in the center surrounded by stratum intermedium. These tissues are enveloped by a basal layer of epithelium known on the outside of the tooth as outer enamel epithelium and on the inside as inner enamel epithelium. During root formation the inner layers of epithelium disappear and only the basal layers are left creating Hertwig's Epithelial Root Sheath (HERS). At this point it is usually referred to as HERS instead of the cervical loop to indicate the structural difference[WP]." [Wikipedia:Cervical_loop] is_a: UBERON:0003843 ! dental epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0006950 name: stellate reticulum namespace: uberon alt_id: UBERON:0007441 def: "The stellate reticulum is a group of cells located in the center of the enamel organ of a developing tooth. These cells are star shaped and synthesize glycosaminoglycans. As glycosamingoglycans are produced, water is drawn in between the cells and stretch them apart. As they are moved further away from one another, the stellate reticulum maintain contact with one another through desmosomes, resulting in their unique appearance. stellate reticulum is lost after the first layer of dentin is laid down. this brings cells in inner enamel epithelium closer to blood vessels at the periphery[WP]." [Wikipedia:Stellate_reticulum] xref: BTO:0003910 xref: ncithesaurus:Stellate_Reticulum is_a: UBERON:0003843 ! dental epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ relationship: part_of UBERON:0006949 ! cervical loop [Term] id: UBERON:0006951 name: inner dental epithelium namespace: uberon def: "Inner layer of the dental organ, composed of ameloblasts[ZFA]. The inner enamel epithelium, also known as the internal enamel epithelium, is a layer of cells located on the rim nearest the dental papilla of the enamel organ in a developing tooth. This layer is first seen during the bell stage. The location of the enamel organ where the outer and inner enamel epithelium join is called the cervical loop[WP]." [Wikipedia:Inner_enamel_epithelium, ZFIN:curator] synonym: "inner enamel epithelium" EXACT [ZFA:0005136] xref: BTO:0003463 xref: ZFA:0005136 xref: ncithesaurus:Inner_Enamel_Epithelium is_a: UBERON:0003843 ! dental epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0006952 name: outer dental epithelium namespace: uberon def: "Outer layer of the dental organ[ZFA]. a layer of cuboidal cells located on the periphery of the enamel organ in a developing tooth. This layer is first seen during the bell stage." [Wikipedia:Outer_enamel_epithelium, ZFIN:curator] synonym: "external dental epithelium" EXACT [BTO:0003462] synonym: "external enamel epithelium" EXACT [Wikipedia:Outer_enamel_epithelium] synonym: "outer enamel epithelium" EXACT [OBOL:automatic] xref: BTO:0003462 xref: ZFA:0005137 xref: ncithesaurus:Outer_Enamel_Epithelium is_a: UBERON:0003843 ! dental epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0006953 name: ejaculatory duct epithelium namespace: uberon def: "The ejaculatory duct epithelium is composed of cuboidal to columnar cells between or through which project the terminal parts of the ducts of the unicellular prostate glands." [PMID:1238970] comment: TODO: split off insect classes xref: BTO:0002618 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0006954 name: mammary myoepithelium namespace: uberon synonym: "lactiferous ductal myo-epithelium" EXACT [FMA:67798] synonym: "myo-epithelium of lactiferous duct" EXACT [FMA:67798] synonym: "myoepithelium of lactiferous duct" EXACT [FMA:67798] xref: BTO:0002310 xref: FMA:67798 is_a: UBERON:0000420 ! myoepithelium is_a: UBERON:0003244 ! epithelium of mammary gland [Term] id: UBERON:0006955 name: uterine epithelium namespace: uberon synonym: "uterus epithelium" RELATED [BTO:0003082] xref: BTO:0003082 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0006956 name: buccal mucosa namespace: uberon def: "The inner lining of the cheeks and lips." [Medical_Dictionary:http://www.medterms.com/] xref: BTO:0003833 xref: FMA:59785 xref: SCTID:16811007 xref: ncithesaurus:Buccal_Mucosa is_a: UBERON:0000344 ! mucosa is_a: UBERON:0003729 ! mouth mucosa relationship: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0003729 ! mouth mucosa [Term] id: UBERON:0006957 name: submandibular gland primordium epithelium namespace: uberon xref: EHDAA2:0001940 xref: EHDAA:9257 xref: EMAPA:17756 is_a: UBERON:0004809 ! salivary gland epithelium is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0006958 name: great vein of heart namespace: uberon def: "The Great Cardiac Vein (left coronary vein) begins at the apex of the heart and ascends along the anterior longitudinal sulcus to the base of the ventricles. It then curves to the left in the coronary sulcus, and reaching the back of the heart, opens into the left extremity of the coronary sinus. It receives tributaries from the left atrium and from both ventricles: one, the left marginal vein, is of considerable size, and ascends along the left margin of the heart." [Wikipedia:Great_cardiac_vein] synonym: "great cardiac vein" EXACT [FMA:4707] xref: EHDAA2:0004508 xref: FMA:4707 xref: MA:0002131 xref: SCTID:277728005 xref: ncithesaurus:Great_Cardiac_Vein is_a: UBERON:0004148 ! coronary vein [Term] id: UBERON:0006959 name: mandible angular process namespace: uberon def: "a process which protrudes from the ventral caudal angle of the mandible, and acts as the attachment of the digastric muscle." [http://medical-dictionary.thefreedictionary.com/mandibular+angular+process] synonym: "Mandibular angle" EXACT [FMA:59459] synonym: "mandibular angle" RELATED [MA:0002873] xref: MA:0002873 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0006960 name: ovary stroma namespace: uberon def: "The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis." [Wikipedia:Stroma_of_ovary] synonym: "interstitial tissue of ovary" EXACT [FMA:18626] synonym: "ovary stroma" EXACT [MA:0002991] synonym: "stroma of the ovary" EXACT [Wikipedia:Stroma_of_ovary] synonym: "stroma ovarica" EXACT [FMA:18626] xref: EMAPA:28880 xref: FMA:18626 xref: MA:0002991 xref: SCTID:259306002 is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0006964 name: pars distalis of adenohypophysis namespace: uberon def: "The distal part of adenohypophysis: the part that makes up the main body of the gland." [Dorlands_Medical_Dictionary:MerckSource, Wikipedia:Pars_distalis] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior lobe" RELATED [MA:0000854] synonym: "pars anterior" BROAD [EHDAA2:0001416, MA:0000854, ZFA:0001195] synonym: "pars anterior of adenohypophysis" EXACT [FMA:74630] synonym: "pars distalis" RELATED [MA:0000854] synonym: "pars distalis (glandula pituitaria)" EXACT [FMA:74630, FMA:TA] synonym: "pars distalis adenohypophyseos" RELATED [BTO:0001787] synonym: "pars distalis adenohypophysis" EXACT [FMA:74630, FMA:TA] synonym: "pars distalis lobi anterioris hypophyseos" RELATED [BTO:0001787] synonym: "pars distalis of anterior lobe of pituitary gland" EXACT [FMA:74630] synonym: "pars glandularis" RELATED [MA:0000854] synonym: "pars glandularis of adenohypophysis" EXACT [FMA:74630] xref: AAO:0010542 xref: BTO:0001787 xref: EHDAA2:0001416 xref: EHDAA:7532 xref: EMAPA:17515 xref: FMA:74630 xref: MA:0000854 xref: VHOG:0000244 xref: ZFA:0001195 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0006965 name: vascular cord namespace: uberon def: "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077] xref: EFO:0003709 xref: ZFA:0005077 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0006966 name: heart capillary namespace: uberon def: "." [GO:0003248] is_a: UBERON:0001982 ! capillary is_a: UBERON:0003498 ! heart blood vessel [Term] id: UBERON:0006967 name: horn namespace: uberon def: "a pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone." [NULL:Horn_(anatomy)] xref: GAID:1225 xref: MESH:A.13.507 is_a: UBERON:0006969 ! cranial appendage [Term] id: UBERON:0006968 name: keratin sheath of horn namespace: uberon is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0006967 ! horn [Term] id: UBERON:0006969 name: cranial appendage namespace: uberon is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0006970 name: bony core of horn namespace: uberon is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0006967 ! horn [Term] id: UBERON:0006971 name: antler namespace: uberon def: "Antlers are the usually large, branching bony appendages on the heads of most deer species." [Wikipedia:Antler] xref: BTO:0001684 xref: GAID:1226 xref: MESH:A.13.507.288 xref: SCTID:410034008 is_a: UBERON:0006969 ! cranial appendage [Term] id: UBERON:0006972 name: nephridium namespace: uberon def: "An exceretory tubule that usually opens to the exterior by a nephridiopore. The inner end of the tubule may be blind, ending in flame cells (protonephridium) or may open into the coelom through a ciliated funnel (metanephridium)." [Wikipedia:Nephridium] xref: BTO:0000923 is_a: UBERON:0006555 ! excretory tube [Term] id: UBERON:0006973 name: protonephridium namespace: uberon def: "a network of dead-end tubules lacking internal openings found in the Phylums Platyhelminthes, kinorhyncha and Rotifera. The ends are called flame cells (if cilliated) or solenocytes (if flagellated); they function in osmoregulation and ionoregulation. The terminal cells are located at the blind end of the protonephridium. Each cell has one or more cilia and their beating inside the protonephridial tube creates an outward going current and hence a partial pressurization in the blind of the tube. Because of this pressurization drives waste fluids from the inside of the animal, they are pulled through small perforations in the terminal cells and into the protonephridium. The perforations in the terminal cell are large enough for small molecules to pass, but larger proteins are retained within the animal. From the bottom of the protonephridium the solutes are led through the tube, formed by the canal cells, and exits the animal from a small opening formed by the nephridiopore. Selective reabsorption of useful molecules by the canal cells occurs as the solutes pass down the tubule. Protonephridia are generally found in basal organisms such as flatworms. Protonephridia likely first arose as a way to cope with a hypotonic environment by removing excess water from the organism (osmoregulation). Their use as excretory/ionoregulatory structures likely arose secondarily." [Wikipedia:Nephridium#Metanephridia] xref: BILA:0000126 is_a: UBERON:0006972 ! nephridium [Term] id: UBERON:0006974 name: metanephridium namespace: uberon def: "a type of excretory gland or nephridium found in many types of invertebrates such as Annelids, Arthropods and Molluscs. It typically consists of a ciliated funnel opening into the body cavity or coelom connected to a duct which may be variously glandularized, folded or expanded (vesiculate) and which typically opens to the organism's exterior. These ciliated tubules pump water carrying surplus ions, metabolic waste, toxins from food, and useless hormones out of the organism through openings known as nephrostomes. This waste is passed out of the body at the nephridiopore. The primary urine produced by filtration of blood (or a similar functioning fluid) is modified into secondary urine through selective reabsorption by the cells lining the metanephridium. In many earthworms the nephridial ducts open into the digestive tract instead, a condition known as enteronephry." [Wikipedia:Nephridium#Metanephridia] xref: BILA:0000127 is_a: UBERON:0006972 ! nephridium [Term] id: UBERON:0006976 name: peptonephridium namespace: uberon def: "Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates." [BTO:0004280] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "esophageal appendage" RELATED [BTO:0004280] synonym: "oesophageal appendage" RELATED [BTO:0004280] xref: BTO:0004280 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity organ relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0006983 name: anatomical point namespace: uberon def: "Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface." [CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010266 xref: AEO:0000009 xref: BILA:0000009 xref: CARO:0000009 xref: EHDAA2:0003009 xref: FMA:9658 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0006984 name: anatomical surface namespace: uberon def: "Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures." [CARO:MAH] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: AAO:0010270 xref: BILA:0000010 xref: CARO:0000010 xref: EHDAA2:0003192 xref: FMA:24137 xref: ID:0000000 xref: ZFA:0005594 xref: ncithesaurus:Anatomic_Surface is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0007005 name: cardiac mesoderm namespace: uberon def: "the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." [XAO:0000235, http://www.drugs.com/dict/cardiogenic-mesoderm.html] comment: consider FBbt:00005541 synonym: "cardiogenic mesoderm" RELATED [http://www.drugs.com/dict/cardiogenic-mesoderm.html] synonym: "heart primordia" RELATED [XAO:0000235] xref: AAO:0011021 xref: BILA:0000051 xref: EHDAA:385 xref: SCTID:360387000 xref: VHOG:0001641 xref: XAO:0000235 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004140 ! heart field relationship: part_of UBERON:0009881 ! anterior lateral plate mesoderm [Term] id: UBERON:0007006 name: blastomere namespace: uberon def: "a type of cell produced by division of the egg after fertilization." [Wikipedia:Blastomere] is_obsolete: true replaced_by: CL:0000353 ! blastoderm cell xref: BILA:0000052 xref: FMA:72551 xref: VHOG:0001221 xref: XAO:0003016 xref: ZFA:0000093 [Term] id: UBERON:0007010 name: cleaving embryo namespace: uberon xref: BILA:0000058 is_a: UBERON:0000922 ! embryo [Term] id: UBERON:0007021 name: juvenile organism namespace: uberon synonym: "juvenile" BROAD [] xref: BILA:0000076 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0007023 name: adult organism namespace: uberon synonym: "adult" BROAD [] xref: BILA:0000078 xref: FBbt:00003004 xref: HAO:0000087 xref: galen:Adult xref: ncithesaurus:Adult is_a: UBERON:0000468 ! multi-cellular organism relationship: develops_from UBERON:0000922 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! embryo [Term] id: UBERON:0007026 name: primitive gut namespace: uberon xref: BILA:0000084 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0007029 name: surface namespace: uberon synonym: "skin" RELATED [BILA:0000118] xref: AEO:0000154 xref: BILA:0000118 xref: EHDAA2:0003154 xref: galen:Surface xref: ncithesaurus:Surface is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0007036 name: photosensory system namespace: uberon xref: BILA:0000140 is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0007037 name: mechanosensory system namespace: uberon xref: BILA:0000142 is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0007094 name: visceral muculature namespace: uberon xref: BILA:0000132 is_a: UBERON:0000383 ! musculature of body [Term] id: UBERON:0007095 name: somatic musculature namespace: uberon xref: BILA:0000133 is_a: UBERON:0000383 ! musculature of body [Term] id: UBERON:0007096 name: cardiac musculature namespace: uberon xref: BILA:0000134 is_a: UBERON:0000383 ! musculature of body [Term] id: UBERON:0007097 name: chordo neural hinge namespace: uberon def: "Portion of tissue that is posterior to the developing notochord during tail bud extension." [ZFA:0001082, http://dev.biologists.org/content/136/10/1591.full] comment: In mouse and chick, the derivative of the NSB (with a minor contribution from the CLE), the `chordo-neural-hinge'(CNH) (Cambray and Wilson, 2007; Catala et al., 1995; Charrier et al., 1999), contains progenitors for the ventral neural tube, somites and notochord (Cambray and Wilson, 2002; McGrew et al., 2008). The CNH is continuous with the most recently formed neural tube and notochord (Fig. 2C-Db2). By contrast, the tissue immediately caudal to the CNH exclusively produces somites in mouse and chick (McGrew et al., 2008). xref: EFO:0003623 xref: VHOG:0001382 xref: XAO:0000108 xref: ZFA:0001082 is_a: UBERON:0000479 ! tissue is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002533 ! tail bud [Term] id: UBERON:0007098 name: mandibular neural crest namespace: uberon def: "Cranial neural crest that migrates into the mandibular arch." [ZFA:0007064] xref: XAO:0000024 xref: ZFA:0007064 is_a: UBERON:0003099 ! cranial neural crest relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: UBERON:0007099 name: hyoid neural crest namespace: uberon def: "Cranial neural crest that migrates into the hyoid arch." [ZFA:0007065] xref: XAO:0000025 xref: ZFA:0007065 is_a: UBERON:0003099 ! cranial neural crest relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: UBERON:0007100 name: circulatory organ namespace: uberon def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507] comment: editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. \"The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian\". Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "adult heart" RELATED [FBbt:00003154] synonym: "cardiac structure" EXACT [] synonym: "dorsal tube" NARROW [Wikipedia:Heart] synonym: "heart" NARROW [GO:0007507] synonym: "heart or heart like organ" EXACT [] xref: ANISEED:1235302 xref: FBbt:00003154 xref: TADS:0000147 xref: http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0007105 name: vitelline duct namespace: uberon def: "In the human embryo, the vitelline duct, also known as the omphalomesenteric duct, is a long narrow tube that joins the yolk-sac to the midgut lumen of the developing fetus. It appears at the end of the fourth week, when the yolk-sac presents the appearance of a small pear-shaped vesicle (the umbilical vesicle). The vesicle can be seen in the afterbirth as a small, somewhat oval-shaped body whose diameter varies from 1 mm to 5 mm. It is situated between the amnion and the chorion and may lie on or at a varying distance from the placenta. Generally, the duct fully obliterates (narrows and disappears) during the seventh week, but a failure of the duct to close is termed a vitelline fistula. This results in discharge of meconium from the umbilicus. About two per cent of fetuses exhibit a type of vitelline fistula characterized by persistence of the proximal part of the vitelline duct as a diverticulum protruding from the small intestine, Meckel's diverticulum, which is situated about two feet above the ileocecal junction, and may be attached by a fibrous cord to the abdominal wall at the umbilicus. Sometimes a narrowing of the lumen of the ileum is seen opposite the site of attachment of the duct." [Wikipedia:Vitelline_duct] synonym: "embryonic yolk stalk" RELATED [Wikipedia:Vitelline_duct] synonym: "omphalomesenteric duct" RELATED [MESH:A.16.254.891, Wikipedia:Vitelline_duct] synonym: "yolk duct" RELATED [Wikipedia:Vitelline_duct] synonym: "yolk-stalk" RELATED [Wikipedia:Vitelline_duct] xref: EMAPA:26139 xref: GAID:1314 xref: MESH:A.16.254.891 xref: Wikipedia:Vitelline_duct is_a: UBERON:0000058 ! duct is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0007106 name: chorionic villus namespace: uberon def: "One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta." [BTO:0001161, Wikipedia:Chorionic_villi] comment: Taxon notes: The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively. synonym: "chorionic villi" RELATED [MESH:A.16.254.403.473.200] synonym: "chorionic villous" RELATED [Wikipedia:Chorionic_villi] synonym: "chorionic villus" RELATED [GAID:1300] synonym: "placental villi" RELATED [GAID:1300] synonym: "placental villus" RELATED [GAID:1300] xref: BTO:0001161 xref: MESH:A.16.254.403.473.200 xref: ncithesaurus:Chorionic_Villus is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0007108 name: vernix caseosa namespace: uberon def: "An unctuous substance composed of sebum and desquamated epithelial cells, which covers the skin of the fetus." [MESH:A.12.200.946] synonym: "vernix caseosa" RELATED [MESH:A.12.200.946] xref: GAID:1174 xref: MESH:A.12.200.946 xref: ncithesaurus:Vernix_Caseosa is_a: UBERON:0000456 ! bodily secretion relationship: part_of UBERON:0000323 ! late embryo [Term] id: UBERON:0007109 name: meconium namespace: uberon def: "A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth." [BTO:0000838] xref: BTO:0000838 xref: ncithesaurus:Meconium is_a: UBERON:0001988 ! feces relationship: part_of UBERON:0000323 ! late embryo [Term] id: UBERON:0007111 name: douglas' pouch namespace: uberon def: "The rectouterine pouch (or rectouterine excavation, rectovaginal, Ehrhardt-Cole Recess or Pouch of Douglas) is the extension of the peritoneal cavity between the rectum and back wall of the uterus in the female human body. The rectouterine pouch is used in the treatment of end-stage renal failure in patients who are treated by peritoneal dialysis. The tip of the dialysis catheter is placed into the deepest point of the pouch. In women it is the deepest point of the peritoneal cavity, posterior to (behind) the uterus and anterior to (in front of) rectum. (The pouch on the other side of the uterus is the vesicouterine excavation. ) It is near the posterior fornix of the vagina. In men, the region corresponding to the rectouterine pouch is the rectovesical excavation, which lies between the urinary bladder and rectum. (There is no equivalent to the vesicouterine excavation.)" [Wikipedia:Recto-uterine_pouch] synonym: "cul de sac of dougla" RELATED [MESH:A.01.047.025.600.225] synonym: "cul-de-sac of dougla" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas cul-de-sac" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas pouch" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas' cul de sac" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas' cul-de-sac" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas' pouch" RELATED [MESH:A.01.047.025.600.225] synonym: "excavatio recto-uterina" EXACT [FMA:14728] synonym: "excavatio rectouterina" EXACT [FMA:14728, FMA:TA] synonym: "recto-uterine pouch" EXACT [FMA:14728] synonym: "rectouterine pouch" EXACT [FMA:14728, MESH:A.01.047.025.600.225] xref: FMA:14728 xref: GAID:20 xref: MESH:A.01.047.025.600.225 xref: SCTID:181447009 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0007113 name: venom namespace: uberon def: "Poisonous animal secretions forming fluid mixtures of many different enzymes, toxins, and other substances. These substances are produced in specialized glands and secreted through specialized delivery systems (nematocysts, spines, fangs, etc.) for disabling prey or predator." [MESH:A.12.200.935] synonym: "venom" RELATED [MESH:A.12.200.935] xref: BTO:0001439 xref: MESH:A.12.200.935 is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0007115 name: deciduous tooth namespace: uberon def: "One of the first set of teeth in the growth development of humans and many other mammals[WP]. The 20 teeth of the first dentition, which are shed and replaced by the permanent teeth, usually by the age of six years. All deciduous teeth are normally expected to erupt by the age of two and a half years[MESH]." [MESH:A.14.254.860.700, Wikipedia:Deciduous_teeth] comment: GAT in FMA. synonym: "primary tooth" EXACT [FMA:55655] synonym: "temporary tooth" EXACT [FMA:55655] xref: FMA:55655 xref: GAID:1266 xref: MESH:A.14.254.860.700 xref: SCTID:245612004 xref: ncithesaurus:Temporary_Tooth is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0007116 name: primary dentition namespace: uberon def: "The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss." [MESH:A.14.254.245] synonym: "baby teeth" EXACT [FMA:75151] synonym: "deciduous dentition" RELATED [GAID:1252] synonym: "deciduous teeth" EXACT [FMA:75151] synonym: "dentes decidui" EXACT [FMA:75151, FMA:TA] synonym: "milk teeth" EXACT [FMA:75151] synonym: "primary teeth" EXACT [FMA:75151, GAID:1266] synonym: "set of deciduous teeth" EXACT [FMA:75151] synonym: "set of primary teeth" EXACT [FMA:75151] synonym: "tooth of primary dentition" EXACT [] xref: FMA:75151 xref: GAID:1252 xref: MESH:A.14.254.245 is_a: UBERON:0003672 ! dentition [Term] id: UBERON:0007118 name: umbilicus namespace: uberon def: "The pit in the center of the abdominal wall marking the point where the umbilical cord entered in the fetus." [MESH:A.01.047.849] synonym: "navel" EXACT [FMA:61584] synonym: "umbilical part of abdomen" EXACT [FMA:61584] synonym: "umbilical region" EXACT [FMA:61584] xref: FMA:61584 xref: GAID:29 xref: MESH:A.01.047.849 xref: SCTID:243961003 xref: galen:Umbilicus xref: ncithesaurus:Umbilicus is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0007119 name: neck of femur namespace: uberon def: "The femur neck or neck of the femur is a flattened pyramidal process of bone, connecting the femoral head with the femoral shaft, and forming with the latter a wide angle opening medialward." [Wikipedia:Femur_neck] synonym: "femoral neck" EXACT [FMA:42385, Wikipedia:Femur_neck] synonym: "femur neck" RELATED [Wikipedia:Femur_neck] synonym: "neck of femur" RELATED [Wikipedia:Femur_neck] synonym: "neck of the femur" RELATED [Wikipedia:Femur_neck] xref: FMA:42385 xref: GAID:201 xref: MESH:A.02.835.232.500.247.510 xref: SCTID:361792007 xref: galen:NeckOfFemur xref: ncithesaurus:Femoral_Neck is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006863 ! proximal metaphysis of femur [Term] id: UBERON:0007120 name: premolar tooth namespace: uberon def: "The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4." [Wikipedia:Premolar] synonym: "bicuspid" RELATED [Wikipedia:Premolar] synonym: "bicuspid teeth" RELATED [Wikipedia:Premolar] synonym: "bicuspid tooth" RELATED [Wikipedia:Premolar] synonym: "bicuspids" RELATED [Wikipedia:Premolar] synonym: "biscuspid" RELATED [Wikipedia:Premolar] synonym: "dens premolaris" RELATED [Wikipedia:Premolar] synonym: "dentes premolares" RELATED [Wikipedia:Premolar] synonym: "first bicuspid" RELATED [Wikipedia:Premolar] synonym: "first premolar" RELATED [Wikipedia:Premolar] synonym: "mandibular bicuspid" RELATED [Wikipedia:Premolar] synonym: "maxillary bicuspid" RELATED [Wikipedia:Premolar] synonym: "maxillary premolar" RELATED [Wikipedia:Premolar] synonym: "pm3 %28dentistry%29" RELATED [Wikipedia:Premolar] synonym: "pr%c3%a6molares" RELATED [Wikipedia:Premolar] synonym: "praemolares" RELATED [Wikipedia:Premolar] synonym: "premolar teeth" RELATED [Wikipedia:Premolar] synonym: "premolar tooth" RELATED [Wikipedia:Premolar] synonym: "premolars" RELATED [Wikipedia:Premolar] synonym: "second bicuspid" RELATED [Wikipedia:Premolar] synonym: "second premolar" RELATED [Wikipedia:Premolar] synonym: "secondary premolar tooth" EXACT [FMA:55637] xref: FMA:55637 xref: GAID:1261 xref: MESH:A.14.254.860.150 xref: SCTID:304572005 xref: ncithesaurus:Bicuspid_Tooth is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0007121 name: dermatome segment of skin namespace: uberon def: "A dermatome is an area of skin that is mainly supplied by a single spinal nerve. There are eight cervical nerves, twelve thoracic nerves, five lumbar nerves and five sacral nerves. Each of these nerves relays sensation (including pain) from a particular region of skin to the brain[WP]." [Wikipedia:Dermatome_(anatomy)] synonym: "dermatome" RELATED [Wikipedia:Dermatome_(anatomy)] xref: FMA:80301 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Dermatomes_and_cutaneous_nerves_-_posterior.png/230px-Dermatomes_and_cutaneous_nerves_-_posterior.png is_a: UBERON:0000014 ! zone of skin [Term] id: UBERON:0007122 name: pharyngeal pouch 1 namespace: uberon alt_id: UBERON:0005718 def: "The endoderm lines the future auditory tube (Pharyngotympanic Eustachian tube) , middle ear, mastoid antrum, and inner layer of the tympanic membrane. & origin of Mandibular nerve & Maxillary artery[WP]. The first pouch lies between the first and second arches[PMID]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#First_pouch] comment: we use adjacency relations rather than part_of, as in EHDAA2 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "1st arch branchial pouch" EXACT [EHDAA2:0000013] synonym: "1st arch branchial pouch endoderm" EXACT [EHDAA2:0000016] synonym: "1st arch pouch endoderm" EXACT [EHDAA2:0000016] synonym: "first arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "first visceral pouch" EXACT [XAO:0000102] synonym: "hyomandibular pouch" EXACT [] synonym: "pharyngeal pouches 1" EXACT PLURAL [ZFA:0001128] synonym: "visceral pouch 1" EXACT [XAO:0000102] xref: AAO:0011114 xref: EFO:0003631 xref: EHDAA2:0000016 xref: EMAPA:16124 xref: SCTID:345248006 xref: VHOG:0000970 xref: XAO:0000102 xref: ZFA:0001128 xref: ncithesaurus:First_Pharyngeal_Pouch is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007123 name: pharyngeal pouch 2 namespace: uberon alt_id: UBERON:0005715 def: "The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060] synonym: "2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061] synonym: "pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130] synonym: "second arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "second visceral pouch" EXACT [XAO:0000247] synonym: "visceral pouch 2" EXACT [XAO:0000247] xref: AAO:0011115 xref: EFO:0003633 xref: EHDAA2:0000061 xref: EMAPA:16275 xref: RETIRED_EHDAA2:0000060 xref: SCTID:345349000 xref: VHOG:0000967 xref: XAO:0000247 xref: ZFA:0001130 xref: ncithesaurus:Second_Pharyngeal_Pouch is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007124 name: pharyngeal pouch 3 namespace: uberon alt_id: UBERON:0005716 def: "The third pouch possesses Dorsal and Ventral wings. Derivatives of the dorsal wings include the inferior parathyroid glands, while the ventral wings fuse to form the cytoreticular cells of the thymus. The main nerve supply to the derivatives of this pouch is Cranial Nerve IX, glossopharyngeal nerve[WP]. The third pouch lies between the third and fourth arches[PMID]." [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Third_pouch] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "3rd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000076] synonym: "3rd arch branchial pouch endoderm" EXACT [EHDAA2:0000077] synonym: "pharyngeal pouches 3" EXACT PLURAL [ZFA:0001131] synonym: "third arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "third visceral pouch" EXACT [XAO:0000251] synonym: "visceral pouch 3" EXACT [XAO:0000251] xref: AAO:0011116 xref: EFO:0003634 xref: EHDAA2:0000077 xref: EMAPA:16586 xref: RETIRED_EHDAA2:0000076 xref: SCTID:345450001 xref: VHOG:0000966 xref: XAO:0000251 xref: ZFA:0001131 xref: ncithesaurus:Third_Pharyngeal_Pouch is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007125 name: pharyngeal pouch 4 namespace: uberon def: "A pouch that is situated between the 4th and 5th pharyngeal arch[Bard]. Derivatives include: superior parathyroid glands and ultimobranchial body which forms the parafollicular C-Cells of the thyroid gland. Musculature and cartilage of larynx (along with the sixth pharyngeal pouch)[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Fourth_pouch] comment: todo - check relationships subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "4th arch branchial pouch" EXACT [RETIRED_EHDAA2:0000090] synonym: "4th arch branchial pouch endoderm" EXACT [EHDAA2:0000091] synonym: "fourth arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "fourth pharyngeal pouch" RELATED [VHOG:0000971] synonym: "fourth visceral pouch" EXACT [XAO:0000254] synonym: "pharyngeal pouches 4" EXACT PLURAL [ZFA:0001134] synonym: "visceral pouch 4" EXACT [XAO:0000254] xref: AAO:0011117 xref: EFO:0003637 xref: EHDAA2:0000091 xref: EMAPA:16766 xref: RETIRED_EHDAA2:0000090 xref: SCTID:362858001 xref: VHOG:0000971 xref: XAO:0000254 xref: ZFA:0001134 xref: ncithesaurus:Fourth_Pharyngeal_Pouch is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007126 name: pharyngeal pouch 5 namespace: uberon def: "Rudimentary structure, becomes part of the fourth pouch contributing to thyroid C-cells[WP]." [Wikipedia:Pharyngeal_pouch_(embryology)#Fifth_pouch] comment: pouches 5 and 6 are hard to distinguish subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "5th pharyngeal pouch" RELATED [VHOG:0001206] synonym: "5th visceral pouch" RELATED [VHOG:0001206] synonym: "fifth pharyngeal pouch" RELATED [VHOG:0001206] synonym: "fifth visceral pouch" EXACT [VHOG:0001206, XAO:0000255] synonym: "pharyngeal pouches 5" EXACT PLURAL [ZFA:0001133] synonym: "visceral pouch 5" EXACT [XAO:0000255] xref: AAO:0011118 xref: EFO:0003636 xref: VHOG:0001206 xref: XAO:0000255 xref: ZFA:0001133 xref: ncithesaurus:Fifth_Pharyngeal_Pouch is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007127 name: pharyngeal pouch 6 namespace: uberon def: "Along with the fourth pouch, contributes to the formation of the musculature and cartilage of the larynx[WP]." [Wikipedia:Pharyngeal_pouch_(embryology)#Sixth_pouch] comment: pouches 5 and 6 are hard to distinguish subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pharyngeal pouches 6" EXACT PLURAL [ZFA:0001132] synonym: "sixth visceral pouch" EXACT [XAO:0000265] synonym: "visceral pouch 6" EXACT [XAO:0000265] xref: AAO:0011119 xref: EFO:0003635 xref: XAO:0000265 xref: ZFA:0001132 is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007128 name: glomeral mesenchyme namespace: uberon def: "Portion of tissue that consists of the precursors of the pronephric glomus or glomerulus; derived from the medial portion of the pronephric intermediate mesoderm." [ISBN:0815318960] synonym: "corpuscle" RELATED [XAO:0000110] synonym: "glomerulus" RELATED [XAO:0000110] xref: XAO:0000110 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007132 name: head kidney namespace: uberon def: "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis." [ZFIN:ZDB-PUB-040923-1, doi:10.1242/dev.00427] comment: in GO, head kidney isa pronephros. Modified the ZFA relationships - the HK is derived from the anterior part of the pronephros and persists until adulthood subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "anterior kidney" EXACT [ZFA:0000669] synonym: "kidney marrow" EXACT [ZFA:0000669] xref: TAO:0000669 xref: ZFA:0000669 is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005172 ! abdomen organ is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0000080 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesonephros [Term] id: UBERON:0007134 name: trunk ganglion namespace: uberon def: "Ganglion which is located in the trunk." [ZFIN:curator] synonym: "body ganglion" EXACT [MAT:0000344] synonym: "trunk ganglia" EXACT PLURAL [ZFA:0001573] xref: EFO:0000901 xref: MAT:0000344 xref: MIAA:0000344 xref: TAO:0001573 xref: ZFA:0001573 is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0007135 name: neural keel namespace: uberon def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576] synonym: "presumptive central nervous system" RELATED [ZFA:0000131] xref: EFO:0003497 xref: TAO:0000131 xref: ZFA:0000131 xref: ZFIN:ZDB-ANAT-010921-559 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0007136 name: rectouterine fold namespace: uberon def: "These folds of the rectouterine excavation are named the sacrogenital or rectouterine folds. They contain a considerable amount of fibrous tissue and non-striped muscular fibers which are attached to the front of the sacrum and constitute the uterosacral ligaments." [Wikipedia:Recto-uterine_fold] synonym: "fold of douglas" EXACT [FMA:16533] synonym: "plica rectouterina" EXACT [FMA:16533, FMA:TA] synonym: "posterior ligament of uterus" EXACT [FMA:16533] synonym: "recto-uterine fold" EXACT [FMA:16533] synonym: "rectovaginal fold" EXACT [FMA:16533] xref: FMA:16533 xref: SCTID:361301006 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0007140 name: parietal mesothelium namespace: uberon def: "Mesothelium overs the body walls is called the parietal mesothelium" [http://en.wikipedia.org/wiki/Mesothelium] xref: MA:0000566 is_a: UBERON:0001136 ! mesothelium [Term] id: UBERON:0007141 name: visceral mesothelium namespace: uberon def: "Mesothelium that covers the internal organs is called visceral mesothelium" [http://en.wikipedia.org/wiki/Mesothelium] xref: MA:0000567 is_a: UBERON:0001136 ! mesothelium [Term] id: UBERON:0007142 name: left internal carotid artery namespace: uberon synonym: "arteria caritis interna sinistra" EXACT [FMA:4062] xref: EMAPA:16329 xref: FMA:4062 xref: SCTID:161452006 is_a: UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001536 ! left common carotid artery plus branches [Term] id: UBERON:0007143 name: right internal carotid artery namespace: uberon synonym: "arteria carotis interna dextra" EXACT [FMA:3949] xref: EMAPA:16330 xref: FMA:3949 xref: SCTID:161251001 is_a: UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001531 ! right common carotid artery plus branches [Term] id: UBERON:0007144 name: tail of embryo namespace: uberon synonym: "embryo tail" EXACT [FMA:85540] xref: EMAPA:16748 xref: FMA:85540 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007145 name: dome of diaphragm namespace: uberon synonym: "diaphragm dome" EXACT [FMA:13332] xref: EMAPA:18046 xref: FMA:13332 xref: SCTID:244940004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0007146 name: posterior spinal artery namespace: uberon synonym: "dorsal spinal artery" EXACT [FMA:50522] xref: EMAPA:18243 xref: FMA:50522 xref: SCTID:181330009 xref: ncithesaurus:Posterior_Spinal_Artery is_a: UBERON:0002458 ! spinal artery is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0002458 ! spinal artery [Term] id: UBERON:0007147 name: lumen of midgut namespace: uberon synonym: "midgut lumen" EXACT [FMA:54366] xref: EMAPA:18377 xref: FMA:54366 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0007148 name: lumen of hindgut namespace: uberon synonym: "hindgut lumen" EXACT [FMA:54367] xref: EMAPA:18396 xref: FMA:54367 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0007149 name: inferior thyroid artery namespace: uberon def: "The inferior thyroid artery passes upward, in front of the vertebral artery and Longus colli, then turns medialward behind the carotid sheath and its contents, and also behind the sympathetic trunk, the middle cervical ganglion resting upon the vessel. Reaching the lower border of the thyroid gland it divides into two branches, which supply the postero-inferior parts of the gland, and anastomose with the superior thyroid, and with the corresponding artery of the opposite side. The recurrent nerve passes upward generally behind, but occasionally in front of, the artery. This makes it vulnerable to injury during surgery that involves ligating the inferior thyroid artery, such as excision of the lower pole of the thyroid gland." [Wikipedia:Inferior_thyroid_artery] xref: EMAPA:18623 xref: FMA:10662 xref: SCTID:303419004 xref: ncithesaurus:Inferior_Thyroid_Artery is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0003847 ! thyroid artery [Term] id: UBERON:0007150 name: superior thyroid artery namespace: uberon def: "The superior thyroid artery arises from the external carotid artery just below the level of the greater cornu of the hyoid bone and ends in the thyroid gland." [Wikipedia:Superior_thyroid_artery] xref: EMAPA:18624 xref: FMA:49472 xref: SCTID:244218002 xref: ncithesaurus:Superior_Thyroid_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0003847 ! thyroid artery [Term] id: UBERON:0007151 name: leaflets of mitral valve namespace: uberon def: "Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve.[FMA]" [FMA:7241, FMA:FMA] synonym: "mitral valve leaflet" EXACT [FMA:7241] synonym: "mitral valvular leaflet" EXACT [FMA:7241] xref: EMAPA:18628 xref: FMA:7241 xref: SCTID:244353007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0007152 name: inferior sagittal sinus namespace: uberon xref: EMAPA:18635 xref: FMA:50768 xref: SCTID:279260007 xref: ncithesaurus:Inferior_Sagittal_Sinus is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0006615 ! venous sinus relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0007153 name: superior epigastric artery namespace: uberon xref: EMAPA:18752 xref: FMA:10646 xref: SCTID:244287004 is_a: UBERON:0003834 ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0002456 ! internal thoracic artery relationship: part_of UBERON:0006349 ! epigastric artery [Term] id: UBERON:0007154 name: inferior epigastric vein namespace: uberon xref: EMAPA:18760 xref: FMA:21162 xref: SCTID:286872000 xref: ncithesaurus:Deep_Epigastric_Vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0006356 ! epigastric vein [Term] id: UBERON:0007155 name: superior epigastric vein namespace: uberon xref: EMAPA:18761 xref: FMA:4731 xref: SCTID:286596001 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0006356 ! epigastric vein [Term] id: UBERON:0007156 name: inferior thyroid vein namespace: uberon synonym: "inferior thyroid venous tree" EXACT [FMA:4728] synonym: "vena thyroidea inferioris" EXACT [FMA:4728] xref: EMAPA:18763 xref: FMA:4728 xref: SCTID:303423007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0007157 name: superior thyroid vein namespace: uberon xref: EMAPA:18764 xref: FMA:14323 xref: SCTID:303421009 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0007158 name: lumen of anal canal namespace: uberon synonym: "anal canal lumen" EXACT [FMA:17357] xref: EMAPA:18836 xref: FMA:17357 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0007159 name: lumen of colon namespace: uberon synonym: "colon lumen" EXACT [FMA:18374] xref: EMAPA:18945 xref: FMA:18374 xref: SCTID:362156004 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0007160 name: inferior petrosal sinus namespace: uberon synonym: "sinus petrosal inferior" EXACT [FMA:50770] xref: EMAPA:19234 xref: FMA:50770 xref: SCTID:279263009 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0007161 name: medial arcuate ligament namespace: uberon xref: EMAPA:19237 xref: FMA:58282 is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0007162 name: lateral arcuate ligament namespace: uberon xref: EMAPA:19238 xref: FMA:58283 is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0007163 name: superior meatus namespace: uberon def: "The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha." [Wikipedia:Superior_nasal_meatus] comment: todo - check FMA synonym: "superior nasal meatus" RELATED [Wikipedia:Superior_nasal_meatus] xref: EMAPA:19276 xref: FMA:53138 xref: FMA:57480 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0007164 name: distal radio-ulnar joint namespace: uberon synonym: "articulation radioulnaris distalis" EXACT [FMA:35290] synonym: "distal radioulnar joint" EXACT [FMA:35290] synonym: "inferior radioulnar joint" EXACT [FMA:35290] xref: EMAPA:19316 xref: FMA:35290 xref: SCTID:182170009 is_a: UBERON:0001528 ! radio-ulnar joint [Term] id: UBERON:0007165 name: proximal radio-ulnar joint namespace: uberon synonym: "superior radioulnar joint" EXACT [FMA:38860] xref: EMAPA:19317 xref: FMA:38860 xref: SCTID:361837005 is_a: UBERON:0001528 ! radio-ulnar joint [Term] id: UBERON:0007166 name: left dome of diaphragm namespace: uberon synonym: "left dome of diaphragm viewed radiologically" EXACT [FMA:13334] xref: EMAPA:25047 xref: FMA:13334 xref: SCTID:244941000 is_a: UBERON:0007145 ! dome of diaphragm [Term] id: UBERON:0007167 name: right dome of diaphragm namespace: uberon synonym: "right dome of diaphragm viewed radiologically" EXACT [FMA:13333] xref: EMAPA:25048 xref: FMA:13333 xref: SCTID:244942007 is_a: UBERON:0007145 ! dome of diaphragm [Term] id: UBERON:0007168 name: long head of biceps brachii namespace: uberon def: "The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] synonym: "caput longum (musculus biceps brachii)" EXACT [FMA:37683] xref: EMAPA:25054 xref: FMA:37683 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii [Term] id: UBERON:0007169 name: short head of biceps brachii namespace: uberon def: "Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] xref: EMAPA:25055 xref: FMA:37682 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii [Term] id: UBERON:0007170 name: squamous part of occipital bone namespace: uberon synonym: "occipital squama" EXACT [FMA:52860] synonym: "squama of occipital bone" EXACT [FMA:52860] xref: EMAPA:25113 xref: FMA:52860 xref: SCTID:139077005 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001676 ! occipital bone [Term] id: UBERON:0007171 name: border of scapula namespace: uberon synonym: "scapular border" EXACT [FMA:23797] xref: EMAPA:25124 xref: FMA:23797 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007172 name: angle of scapula namespace: uberon synonym: "scapular angle" EXACT [FMA:23800] xref: EMAPA:25125 xref: FMA:23800 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007173 name: lateral border of scapula namespace: uberon synonym: "axillary border of scapula" EXACT [FMA:23239] synonym: "lateral border of scapula" EXACT [FMA:23239] synonym: "margo lateralis (scapula)" EXACT [FMA:23239] synonym: "margo lateralis scapulae" EXACT [FMA:23239, FMA:TA] xref: EMAPA:25126 xref: FMA:23239 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007174 name: medial part of scapula namespace: uberon synonym: "margo medialis (scapula)" EXACT [FMA:23242] synonym: "margo medialis scapulae" EXACT [FMA:23242, FMA:TA] synonym: "medial border of scapula" EXACT [FMA:23242] synonym: "vertebral border of scapula" EXACT [FMA:23242] xref: EMAPA:25127 xref: FMA:23242 xref: SCTID:368187009 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007175 name: inferior angle of scapula namespace: uberon synonym: "angulus inferior (scapula)" EXACT [FMA:13315] xref: EMAPA:25128 xref: FMA:13315 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007176 name: superior angle of scapula namespace: uberon synonym: "angulus superior (scapula)" EXACT [FMA:23248] xref: EMAPA:25129 xref: FMA:23248 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007177 name: lamina propria of mucosa of colon namespace: uberon synonym: "colonic lamina propria" EXACT [FMA:15657] synonym: "lamina propria of colonic mucosa" EXACT [FMA:15657] synonym: "lamina propria of colonic mucous membrane" EXACT [FMA:15657] xref: EMAPA:27395 xref: FMA:15657 xref: SCTID:113284008 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004780 ! gastrointestinal system lamina propria [Term] id: UBERON:0007178 name: muscularis mucosa of mucosa of colon namespace: uberon synonym: "lamina muscularis of colonic mucosa" EXACT [FMA:15656] synonym: "lamina muscularis of colonic mucous membrane" EXACT [FMA:15656] xref: EMAPA:27399 xref: FMA:15656 xref: SCTID:885000 is_a: UBERON:0001239 ! muscularis mucosae of large intestine [Term] id: UBERON:0007179 name: basal cell layer of urothelium namespace: uberon synonym: "basal cell layer of uroepithelium" EXACT [FMA:84154] xref: EMAPA:28806 xref: FMA:84154 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000365 ! urothelium [Term] id: UBERON:0007180 name: atretic follicle of ovary namespace: uberon synonym: "folliculus atreticus (Ovarium)" EXACT [FMA:18697] xref: EMAPA:29874 xref: FMA:18697 xref: SCTID:259073003 is_a: UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0007181 name: serosa of infundibulum of uterine tube namespace: uberon synonym: "serosa of infundibulum of fallopian tube" EXACT [FMA:18324] synonym: "serosa of infundibulum of oviduct" EXACT [FMA:18324] xref: EMAPA:29903 xref: FMA:18324 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005983 ! heart layer relationship: part_of UBERON:0003983 ! conus arteriosus [Term] id: UBERON:0007182 name: muscle layer of infundibulum of uterine tube namespace: uberon synonym: "muscle layer of infundibulum of fallopian tube" EXACT [FMA:18336] synonym: "muscle layer of infundibulum of oviduct" EXACT [FMA:18336] synonym: "muscularis of infundibulum of uterine tube" EXACT [FMA:18336] xref: EMAPA:31264 xref: FMA:18336 is_a: UBERON:0006642 ! muscle layer of oviduct relationship: part_of UBERON:0003983 ! conus arteriosus [Term] id: UBERON:0007185 name: pericardio-peritoneal canal mesothelium namespace: uberon xref: EHDAA2:0001442 xref: EMAPA:16284 xref: VHOG:0000447 is_a: UBERON:0001136 ! mesothelium is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0007186 name: pericardial visceral mesothelium namespace: uberon xref: EMAPA:16589 xref: FMA:19741 xref: VHOG:0000778 is_a: UBERON:0007141 ! visceral mesothelium [Term] id: UBERON:0007187 name: pericardial parietal mesothelium namespace: uberon xref: EMAPA:16588 xref: FMA:19742 is_a: UBERON:0007140 ! parietal mesothelium [Term] id: UBERON:0007188 name: mesothelium of serous pericardium namespace: uberon synonym: "mesothelium of pericardium" EXACT [FMA:18149] synonym: "pericardial mesothelium" EXACT [FMA:18149] synonym: "serous pericardium mesothelium" EXACT [FMA:18149] xref: BTO:0003157 xref: EMAPA:16133 xref: FMA:18149 xref: SCTID:67300002 is_a: UBERON:0001136 ! mesothelium [Term] id: UBERON:0007190 name: paracentral gyrus namespace: uberon xref: FMA:77537 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0007191 name: anterior paracentral gyrus namespace: uberon xref: FMA:77537 is_a: UBERON:0007190 ! paracentral gyrus [Term] id: UBERON:0007192 name: posterior paracentral gyrus namespace: uberon xref: FMA:77538 is_a: UBERON:0007190 ! paracentral gyrus [Term] id: UBERON:0007193 name: orbital gyrus namespace: uberon xref: FMA:256194 xref: SCTID:280372002 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0007194 name: vesicular gland namespace: uberon def: "The vesicular gland is part of the male reproductive system. The vesicular gland contributes fluids, energy substrates, and buffers to semen. It can be found near the Coagulating gland, which also belongs to the reproductive system." [BTO:0003717] comment: todo - check this agaist seminal vesicle xref: BTO:0003717 xref: MA:0000405 xref: ncithesaurus:Vesicular_Gland is_a: UBERON:0010147 ! male accessory sex gland [Term] id: UBERON:0007195 name: stroma of bone marrow namespace: uberon def: "The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma] synonym: "bone marrow stroma" EXACT [FMA:21426] xref: FMA:21426 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002371 ! bone marrow [Term] id: UBERON:0007196 name: tracheobronchial tree namespace: uberon def: "the structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells." [Wikipedia:Tracheobronchial_tree] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: FMA:7393 xref: SCTID:361384001 is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0007197 name: hermaphroditic organism namespace: uberon def: "Multi-cellular organism that can produce both male and female gametes." [CARO:MAH] synonym: "dioecious organism" RELATED [BILA:0000029] synonym: "hermaphrodite" RELATED [WBbt:0007849] xref: AAO:0010035 xref: BILA:0000029 xref: CARO:0000029 xref: HAO:0000029 xref: TADS:0000601 xref: WBbt:0007849 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0007198 name: hermaphrodite anatomical structure namespace: uberon alt_id: AEO:0000177 def: "An anatomical structure present only in hermaphrodites." [JB:DEF] synonym: "hermaphrodite-specific" RELATED [WBbt:0005758] xref: EHDAA2:0003177 xref: WBbt:0005758 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0007197 ! hermaphroditic organism [Term] id: UBERON:0007204 name: brachiocephalic vasculature namespace: uberon is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0007213 name: mesenchyme derived from head neural crest namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "head mesenchyme from cranial neural crest" EXACT [] synonym: "head mesenchyme from neural crest" EXACT [EHDAA2:0000735] xref: EFO:0003572 xref: EHDAA2:0000735 xref: EMAPA:16169 xref: ZFA:0000787 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005253 ! head mesenchyme [Term] id: UBERON:0007214 name: mesenchyme derived from trunk neural crest namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "trunk mesenchyme from neural crest" EXACT [EHDAA2:0002093] xref: EHDAA2:0002093 xref: EMAPA:16182 xref: ZFA:0000999 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0007215 name: trabecula cranii namespace: uberon def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [ZFIN:curator] comment: A paired cartilaginous element appearing in the preotic section of the head at the border between the brain and visceral structures (The Trabecula cranii: development and homology of an enigmatic vertebrate head structure - Cerny et al 2006) synonym: "trabeculae cranii" EXACT PLURAL [ZFA:0001507] xref: TAO:0001507 xref: ZFA:0001507 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0005945 ! neurocranial trabecula [Term] id: UBERON:0007220 name: late embryonic stage namespace: uberon synonym: "embryo late (growth) stage" EXACT [MIAA:0000399] synonym: "embryo late growth stage" RELATED [BTO:0000449] synonym: "embryo late stage" RELATED [BTO:0000449] synonym: "fetal stage" NARROW SENSU [UBERON:cjm] synonym: "fetus" NARROW [MIAA:0000399] synonym: "fetus stage" NARROW SENSU [UBERON:cjm] xref: EV:0300011 xref: EVM:2990031 xref: FBdv:00005333 xref: MIAA:0000399 xref: OGES:000023 xref: SCTID:367619004 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0007221 name: neonate stage namespace: uberon def: "Of or pertaining to the period of time immediately following birth, or to the newborn." [Wikipedia:Infant, http://en.wiktionary.org/wiki/neonatal] synonym: "fledgling stage" NARROW SENSU [UBERON:cjm] synonym: "hatchling stage" NARROW SENSU [UBERON:cjm] synonym: "infant stage" NARROW SENSU [UBERON:cjm] synonym: "neonatal stage" EXACT [OBOL:automatic] synonym: "nestling stage" NARROW SENSU [UBERON:cjm] synonym: "newborn stage" RELATED [UBERON:cjm] xref: BTO:0001762 xref: EV:0300037 xref: NIF_Organism:birnlex_695 xref: OGES:000025 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000112 ! juvenile stage [Term] id: UBERON:0007222 name: late adult stage namespace: uberon synonym: "elderly" RELATED [EV:0300123] synonym: "elderly stage" RELATED [EV:0300123] synonym: "geriatric" RELATED [EV:0300123] synonym: "geriatric stage" RELATED [EV:0300123] xref: EV:0300123 xref: NIF_Organism:birnlex_691 xref: ncithesaurus:Elderly is_a: UBERON:0000113 ! post-juvenile adult stage [Term] id: UBERON:0007223 name: osseus cochlea namespace: uberon def: "The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve." [http://www.innerbody.com/image_nerv14/nerv175.html] comment: todo - check this. in MA, cochlea is not part of the bony labyrinth xref: MA:0000239 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001839 ! bony labyrinth relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0007224 name: medial entorhinal cortex namespace: uberon def: "The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area." [BTO:0004347] xref: BTO:0004346 xref: MA:0000922 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002728 ! entorhinal area relationship: part_of UBERON:0002895 ! secondary olfactory cortex [Term] id: UBERON:0007225 name: lateral entorhinal cortex namespace: uberon def: "The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area." [BTO:0004347] synonym: "Entorhinal area, lateral part" EXACT [ABA:ENTl] xref: ABA:ENTl xref: BTO:0004347 xref: MA:0000911 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002728 ! entorhinal area relationship: part_of UBERON:0002895 ! secondary olfactory cortex relationship: part_of UBERON:0002022 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! insula [Term] id: UBERON:0007227 name: superior vestibular nucleus namespace: uberon def: "The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus." [Wikipedia:Superior_vestibular_nucleus] synonym: "Bechterew's nucleus" RELATED [Wikipedia:Superior_vestibular_nucleus] synonym: "nucleus of Bechterew" EXACT [FMA:54617] xref: ABA:SUV xref: BM:Me-VS-VSS xref: BTO:0004372 xref: EV:0100257 xref: FMA:54617 xref: ncithesaurus:Superior_Vestibular_Nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: "spatially_disjoint_from" UBERON:0001721 property_value: "spatially_disjoint_from" UBERON:0001722 property_value: "spatially_disjoint_from" UBERON:0007230 [Term] id: UBERON:0007228 name: vestibular nucleus namespace: uberon def: "The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]." [Wikipedia:Vestibular_nucleus] comment: See comments for 'vestibular nuclear complex synonym: "vestibular nucleus of acoustic nerve" EXACT [FMA:54602] synonym: "vestibular nucleus of eighth cranial nerve" EXACT [FMA:54602] xref: EV:0100254 xref: FMA:54602 xref: SCTID:362462004 xref: ncithesaurus:Vestibular_Nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0002584 ! regional part of vestibular nuclear complex is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0002673 ! vestibular nuclear complex [Term] id: UBERON:0007230 name: lateral vestibular nucleus namespace: uberon def: "The lateral vestibular nucleus (Deitersbs nucleus) is the continuation upward and lateralward of the principal nucleus, and in it terminate many of the ascending branches of the vestibular nerve." [Wikipedia:Lateral_vestibular_nucleus] synonym: "Deiter's nucleus" EXACT [FMA:54614] synonym: "Deiters' nucleus" EXACT [FMA:54614] synonym: "lateral nucleus of Deiters" EXACT [FMA:54614] synonym: "nucleus of Deiters" EXACT [FMA:54614] xref: ABA:LAV xref: BM:Me-VS-VSL xref: BTO:0004370 xref: FMA:54614 xref: GAID:603 xref: MESH:A.08.186.211.132.810.428.600.800.800 xref: SCTID:280176007 xref: ncithesaurus:Lateral_Vestibular_Nucleus is_a: UBERON:0007228 ! vestibular nucleus property_value: "spatially_disjoint_from" UBERON:0001721 property_value: "spatially_disjoint_from" UBERON:0001722 property_value: "spatially_disjoint_from" UBERON:0007227 [Term] id: UBERON:0007232 name: 2 cell stage namespace: uberon synonym: "NF stage 2 (2-cell)" NARROW SENSU [XAO:1000011] synonym: "two-cell stage" EXACT [OBOL:automatic] xref: EMAPA:16036 xref: XAO:1000011 xref: ZFS:0000002 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007233 name: 4 cell stage namespace: uberon synonym: "NF stage 3 (4-cell)" NARROW SENSU [XAO:1000013] synonym: "four-cell stage" EXACT [OBOL:automatic] xref: XAO:1000013 xref: ZFS:0000003 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007234 name: 4-8 cell stage namespace: uberon synonym: "four-eight cell stage" EXACT [OBOL:automatic] xref: EMAPA:16037 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007236 name: 8 cell stage namespace: uberon synonym: "NF stage 4 (8-cell)" NARROW SENSU [XAO:1000014] synonym: "eight-cell stage" EXACT [OBOL:automatic] xref: XAO:1000014 xref: ZFS:0000004 is_a: UBERON:0000067 ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007237 name: 1st arch mandibular component namespace: uberon xref: EHDAA2:0000031 xref: EHDAA:583 xref: EMAPA:16382 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0007238 name: 1st arch maxillary component namespace: uberon xref: EHDAA2:0000038 xref: EHDAA:595 xref: EMAPA:16388 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0007239 name: tunica media of artery namespace: uberon synonym: "arterial media" EXACT [EV:0100029] synonym: "tunica media (arteriae)" EXACT [FMA:14273] xref: EV:0100029 xref: FMA:14273 xref: SCTID:84300001 is_a: UBERON:0002522 ! tunica media is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000415 ! artery wall [Term] id: UBERON:0007240 name: tunica adventitia of artery namespace: uberon synonym: "arterial adventitia" EXACT [EV:0100030] synonym: "tunica externa (adventitia)(arteriae)" EXACT [FMA:14274] xref: EV:0100030 xref: FMA:14274 xref: SCTID:113261001 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005734 ! tunica adventitia relationship: part_of UBERON:0000415 ! artery wall [Term] id: UBERON:0007241 name: tunica adventitia of vein namespace: uberon synonym: "tunica externa (adventitia)(venae)" EXACT [FMA:14355] synonym: "venous adventitia" EXACT [EV:0100034] xref: EV:0100034 xref: FMA:14355 xref: SCTID:13202006 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005734 ! tunica adventitia [Term] id: UBERON:0007242 name: tunica intima of vein namespace: uberon synonym: "tunica interna (intima)(venae)" EXACT [FMA:14353] synonym: "venous intima" EXACT [EV:0100032] xref: EV:0100032 xref: FMA:14353 xref: SCTID:2436009 is_a: UBERON:0002523 ! tunica intima [Term] id: UBERON:0007243 name: tunica media of vein namespace: uberon synonym: "tunica media (venae)" EXACT [FMA:14354] synonym: "venous media" EXACT [EV:0100033] xref: EV:0100033 xref: FMA:14354 xref: SCTID:42049001 is_a: UBERON:0002522 ! tunica media is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0007244 name: inferior olivary nucleus namespace: uberon def: "The inferior olivary nucleus is the largest nucleus situated in the olivary body, part of the medulla oblongata." [Wikipedia:Inferior_olivary_nucleus] synonym: "inferior olive" RELATED [Wikipedia:Inferior_olivary_nucleus] xref: BTO:0003844 xref: EMAPA:19241 xref: SCTID:369066005 xref: VHOG:0001380 is_a: UBERON:0002574 ! regional part of inferior olivary complex is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:0007245 name: nuclear complex of neuraxis namespace: uberon def: "Internal gray matter component which consists of an assemblage of nuclei of neuraxis. Example: cerebellar nuclear complex, Vestibular nuclear complex.[FMA]" [FMA:84059, FMA:FMA] comment: todo - move existing complex classes currently under nucleus to be under this class xref: FMA:84059 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0007247 name: superior olivary nucleus namespace: uberon synonym: "nucleus of superior olivary complex" EXACT [FMA:72246] synonym: "superior olive" RELATED [MA:0001026] xref: FMA:72246 xref: MA:0001026 xref: SCTID:369024009 xref: VHOG:0001381 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus [Term] id: UBERON:0007249 name: dorsal accessory inferior olivary nucleus namespace: uberon def: "The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus" [Wikipedia:Olivary_body#Olivary_nuclei] synonym: "dorsal accessory olivary nucleus" EXACT [FMA:72593] synonym: "inferior olivary complex, dorsal accessory olive" EXACT [FMA:72593] synonym: "inferior olive, dorsal nucleus" EXACT [FMA:72593] synonym: "nucleus olivaris accessorius posterior" EXACT [FMA:72593, FMA:TA] synonym: "posterior accessory olivary nucleus" EXACT [FMA:72593] xref: FMA:72593 xref: SCTID:369068006 is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0007250 name: lingual tonsil namespace: uberon def: "The lingual tonsils are rounded masses of lymphatic tissue that cover the posterior region of the tongue. They are on the dorsal surface at the base of the tongue. Their lymphatic tissue are dense and nodular, their surface is covered with stratified squamous epithelium which invaginates as a single crypt into each lingual tonsil. They are partially surrounded by connective tissue placing them in the group of Partially-Encapsulated Lymphatic Organs, tonsils, the only one of its kind. They have associated mucous glands which are drained by ducts directly into the single tonsillar crypt." [Wikipedia:Lingual_tonsils] xref: FMA:54836 xref: SCTID:276957006 xref: ncithesaurus:Lingual_Tonsil is_a: UBERON:0002372 ! tonsil [Term] id: UBERON:0007251 name: preoptic nucleus namespace: uberon xref: EV:0100226 is_a: UBERON:0006569 ! diencephalic nucleus [Term] id: UBERON:0007252 name: intervertebral disk of cervical vertebra namespace: uberon synonym: "cervical intervertebral disc" EXACT [FMA:13895] synonym: "intervertebral disc of cervical region" EXACT [EMAPA:19415] xref: EMAPA:19415 xref: FMA:13895 xref: SCTID:68818006 is_a: UBERON:0001066 ! intervertebral disk [Term] id: UBERON:0007254 name: intervertebral disk of thoracic vertebra namespace: uberon synonym: "intervertebral disc of thoracic region" EXACT [EMAPA:19489] xref: EMAPA:19489 xref: FMA:10455 is_a: UBERON:0001066 ! intervertebral disk is_a: UBERON:0005181 ! thoracic segment organ [Term] id: UBERON:0007255 name: intervertebral disk of lumbar vertebra namespace: uberon synonym: "intervertebral disc of lumbar region" EXACT [EMAPA:19468] xref: EMAPA:19468 xref: FMA:13894 is_a: UBERON:0001066 ! intervertebral disk is_a: UBERON:0005173 ! abdominal segment organ [Term] id: UBERON:0007257 name: intervertebral disk of sacral vertebra namespace: uberon synonym: "intervertebral disc of sacral region" EXACT [EMAPA:19575] xref: EMAPA:19575 is_a: UBERON:0001066 ! intervertebral disk is_a: UBERON:0005179 ! pelvis organ [Term] id: UBERON:0007260 name: intervertebral disk of third cervical vertebra namespace: uberon synonym: "C3 intervertebral disk" EXACT [FMA:13896] synonym: "intervertebral disk, C3-C4" EXACT [FMA:13896] xref: EMAPA:19422 xref: FMA:13896 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007261 name: intervertebral disk of fourth cervical vertebra namespace: uberon synonym: "intervertebral disc of fourth cervical vertebra" EXACT [FMA:13897] synonym: "intervertebral disk, C4-C5" EXACT [FMA:13897] xref: EMAPA:19425 xref: FMA:13897 xref: SCTID:361748005 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007262 name: intervertebral disk of fifth cervical vertebra namespace: uberon synonym: "intervertebral disc of fifth cervical vertebra" EXACT [FMA:13898] synonym: "intervertebral disk, C5-C6" EXACT [FMA:13898] xref: EMAPA:19428 xref: FMA:13898 xref: SCTID:361749002 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007263 name: intervertebral disk of sixth cervical vertebra namespace: uberon synonym: "intervertebral disk, C6-C7" EXACT [FMA:13899] xref: EMAPA:19460 xref: FMA:13899 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007264 name: intervertebral disk of seventh cervical vertebra namespace: uberon synonym: "intervertebral disk, C7-T1" EXACT [FMA:13900] xref: EMAPA:19463 xref: FMA:13900 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007265 name: intervertebral disk of axis namespace: uberon synonym: "C2 disk" EXACT [FMA:25058] synonym: "C2 intervertebral disk" EXACT [FMA:25058] synonym: "intervertebral disc of second cervical vertebra" EXACT [FMA:25058] synonym: "intervertebral disk of second cervical vertebra" EXACT [FMA:25058] synonym: "intervertebral disk, C2-C3" EXACT [FMA:25058] synonym: "second cervical intervertebral disk" EXACT [FMA:25058] xref: EMAPA:19419 xref: FMA:25058 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007266 name: intervertebral disk of atlas namespace: uberon synonym: "C1 disk" EXACT [] synonym: "C1 intervertebral disk" EXACT [] synonym: "first cervical intervertebral disk" EXACT [] synonym: "intervertebral disc of first cervical vertebra" EXACT [] synonym: "intervertebral disk of first cervical vertebra" EXACT [] synonym: "intervertebral disk, C1-C2" EXACT [] xref: EMAPA:19416 xref: FMA:25058 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007267 name: trachea pre-cartilage rings namespace: uberon synonym: "cartilaginous ring of trachea " EXACT [EMAPA:18699] xref: EHDAA2:0002070 xref: EHDAA:7082 xref: EMAPA:18699 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0009505 ! associated mesenchyme of trachea [Term] id: UBERON:0007268 name: upper esophageal sphincter namespace: uberon def: "The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx." [Wikipedia:Upper_esophageal_sphincter] synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter] xref: Wikipedia:Upper_esophageal_sphincter xref: ncithesaurus:Upper_Esophageal_Sphincter is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0007652 ! esophageal sphincter relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0007269 name: fore limb/fin musculature namespace: uberon synonym: "pectoral fin musculature" NARROW SENSU [ZFA:0000563] xref: EFO:0003540 xref: ZFA:0000563 is_a: UBERON:0007271 ! limb/fin musculature relationship: develops_from UBERON:0003934 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesenchyme pectoral fin relationship: part_of UBERON:0000151 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pectoral fin [Term] id: UBERON:0007270 name: hind limb/fin musculature namespace: uberon synonym: "pelvic fin musculature" NARROW SENSU [ZFA:0000258] xref: ZFA:0000258 is_a: UBERON:0007271 ! limb/fin musculature relationship: develops_from UBERON:0003935 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesenchyme pelvic fin relationship: part_of UBERON:0000152 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pelvic fin [Term] id: UBERON:0007271 name: limb/fin musculature namespace: uberon synonym: "fin musculature" NARROW SENSU [ZFA:0000207] xref: ZFA:0000207 is_a: UBERON:0001015 ! musculature [Term] id: UBERON:0007272 name: fore limb/fin skeleton namespace: uberon synonym: "pectoral fin skeleton" NARROW SENSU [ZFA:0000943] xref: EFO:0003594 xref: ZFA:0000943 is_a: UBERON:0004288 ! skeleton is_a: UBERON:0002091 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! appendicular skeleton relationship: part_of UBERON:0000151 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pectoral fin [Term] id: UBERON:0007273 name: hind limb/fin skeleton namespace: uberon synonym: "pelvic fin skeleton" NARROW SENSU [ZFA:0001387] xref: ZFA:0001387 is_a: UBERON:0004288 ! skeleton is_a: UBERON:0002091 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! appendicular skeleton relationship: part_of UBERON:0000152 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pelvic fin [Term] id: UBERON:0007274 name: crista of ampulla of anterior semicircular duct of membranous laybrinth namespace: uberon comment: todo - unvetted subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "anterior crista ampullaris" EXACT [ZFA:0000619] synonym: "anterior cristae" EXACT PLURAL [ZFA:0000619] synonym: "anterior semicircular canal sensory patch" EXACT [ZFA:0000619] synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000619] synonym: "rostral crista" EXACT [ZFA:0000619] xref: FMA:75610 xref: XAO:0004137 xref: ZFA:0000619 is_a: UBERON:0003238 ! epithelium of superior semicircular canal is_a: UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: UBERON:0007275 name: crista of ampulla of posterior semicircular duct of membranous laybrinth namespace: uberon comment: todo - unvetted subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "caudal crista" EXACT [ZFA:0000566] synonym: "posterior crista ampullaris" EXACT [ZFA:0000566] synonym: "posterior cristae" EXACT PLURAL [ZFA:0000566] synonym: "posterior semicircular canal sensory patch" EXACT [ZFA:0000566] synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000566] xref: FMA:75611 xref: XAO:0004133 xref: ZFA:0000566 is_a: UBERON:0003239 ! epithelium of posterior semicircular canal is_a: UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: UBERON:0007276 name: crista of ampulla of lateral semicircular duct of membranous laybrinth namespace: uberon comment: todo - unvetted subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "lateral crista ampullaris" EXACT [ZFA:0000166] synonym: "lateral cristae" EXACT PLURAL [ZFA:0000166] synonym: "lateral semicircular canal sensory patch" EXACT [ZFA:0000166] synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [ZFA:0000166] xref: FMA:75612 xref: ZFA:0000166 is_a: UBERON:0003240 ! epithelium of lateral semicircular canal is_a: UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: UBERON:0007277 name: presumptive hindbrain namespace: uberon xref: EFO:0003440 xref: ZFA:0000569 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0006238 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! future brain relationship: part_of UBERON:0007284 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive neural plate [Term] id: UBERON:0007278 name: presumptive sinus venosus namespace: uberon xref: ZFA:0001722 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0004141 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! heart tube [Term] id: UBERON:0007279 name: presumptive atrioventricular canal namespace: uberon xref: ZFA:0001723 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0004141 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! heart tube [Term] id: UBERON:0007280 name: presumptive endocardium namespace: uberon xref: ZFA:0001724 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0004141 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! heart tube [Term] id: UBERON:0007281 name: presumptive midbrain hindbrain boundary namespace: uberon synonym: "presumptive MHB" EXACT [UBERON:cjm] xref: EFO:0003446 xref: XAO:0004086 xref: ZFA:0001187 is_a: UBERON:0009774 ! embryonic midbrain hindbrain boundary relationship: part_of UBERON:0001017 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! central nervous system [Term] id: UBERON:0007282 name: presumptive segmental plate namespace: uberon xref: EFO:0003421 xref: ZFA:0000053 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesoderm [Term] id: UBERON:0007283 name: presumptive shield namespace: uberon xref: EFO:0003444 xref: ZFA:0001121 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0007284 name: presumptive neural plate namespace: uberon xref: EFO:0003424 xref: ZFA:0000063 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0007285 name: presumptive paraxial mesoderm namespace: uberon xref: EFO:0003443 xref: XAO:0004134 xref: ZFA:0000591 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! embryonic structure is_a: UBERON:0006603 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive mesoderm [Term] id: UBERON:0007286 name: presumptive floor plate namespace: uberon xref: EFO:0003454 xref: ZFA:0001218 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0003075 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural plate [Term] id: UBERON:0007287 name: presumptive bulbus arteriosus namespace: uberon xref: ZFA:0001712 is_a: UBERON:0006598 ! presumptive structure relationship: develops_from UBERON:0005428 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! vagal neural crest relationship: part_of UBERON:0004141 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! heart tube [Term] id: UBERON:0007288 name: presumptive forebrain midbrain boundary namespace: uberon xref: EFO:0003463 xref: ZFA:0001368 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0006238 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! future brain relationship: part_of UBERON:0007284 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! presumptive neural plate [Term] id: UBERON:0007289 name: presumptive rhombomere 1 namespace: uberon xref: ZFA:0001207 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007290 name: presumptive rhombomere 3 namespace: uberon xref: EFO:0003451 xref: ZFA:0001213 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007291 name: presumptive rhombomere 4 namespace: uberon xref: EFO:0003450 xref: ZFA:0001212 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007292 name: presumptive rhombomere 5 namespace: uberon xref: EFO:0003449 xref: ZFA:0001211 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007293 name: presumptive rhombomere 6 namespace: uberon xref: EFO:0003448 xref: ZFA:0001210 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007294 name: presumptive rhombomere 7 namespace: uberon xref: EFO:0003447 xref: ZFA:0001209 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007295 name: presumptive rhombomere 8 namespace: uberon xref: EFO:0003452 xref: ZFA:0001214 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007296 name: presumptive rhombomere 2 namespace: uberon xref: ZFA:0001208 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0007135 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! neural keel [Term] id: UBERON:0007297 name: presumptive pronephric mesoderm namespace: uberon synonym: "nephron primordium" EXACT [ZFA:0001070] xref: EFO:0003619 xref: ZFA:0001070 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0000926 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! mesoderm relationship: part_of UBERON:0003064 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! intermediate mesoderm [Term] id: UBERON:0007298 name: pronephric proximal convoluted tubule namespace: uberon xref: ZFA:0001620 is_a: UBERON:0001287 ! proximal convoluted tubule is_a: UBERON:0006173 ! pronephric proximal tubule is_a: UBERON:0000058 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! duct relationship: part_of UBERON:0003060 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pronephric duct [Term] id: UBERON:0007299 name: choroid plexus of tectal ventricle namespace: uberon synonym: "choroid plexus tectal ventricle" EXACT [ZFA:0001445] xref: ZFA:0001445 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0007300 name: fore limb/fin blood vessel namespace: uberon synonym: "pectoral fin blood vessel" NARROW SENSU [ZFA:0005301] xref: ZFA:0005301 is_a: UBERON:0007301 ! limb/fin blood vessel relationship: part_of UBERON:0007302 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! fore limb/fin vasculature [Term] id: UBERON:0007301 name: limb/fin blood vessel namespace: uberon synonym: "fin blood vessel" NARROW SENSU [ZFA:0005299] xref: ZFA:0005299 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0007304 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! limb/fin vasculature [Term] id: UBERON:0007302 name: fore limb/fin vasculature namespace: uberon synonym: "pectoral fin vasculature" NARROW SENSU [ZFA:0005096] xref: ZFA:0005096 is_a: UBERON:0007304 ! limb/fin vasculature relationship: part_of UBERON:0000151 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pectoral fin [Term] id: UBERON:0007303 name: pharyngeal vasculature namespace: uberon synonym: "branchial vasculature" EXACT [ZFA:0005003] xref: ZFA:0005003 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002049 ! vasculature relationship: part_of UBERON:0002200 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! vasculature of head relationship: part_of UBERON:0002539 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal arch [Term] id: UBERON:0007304 name: limb/fin vasculature namespace: uberon synonym: "fin vasculature" NARROW SENSU [ZFA:0005095] xref: ZFA:0005095 is_a: UBERON:0002049 ! vasculature is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0007306 name: pronephric glomerular capillary namespace: uberon xref: ZFA:0005309 is_a: UBERON:0004212 ! glomerular capillary relationship: part_of UBERON:0004739 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pronephric glomerulus [Term] id: UBERON:0007307 name: pronephric glomerular basement membrane namespace: uberon xref: ZFA:0005313 is_a: UBERON:0005777 ! glomerular basement membrane is_a: UBERON:0000482 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! basal lamina relationship: part_of UBERON:0004739 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pronephric glomerulus [Term] id: UBERON:0007308 name: pronephric distal early tubule namespace: uberon xref: ZFA:0001622 is_a: UBERON:0006337 ! distal early tubule is_a: UBERON:0000058 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! duct relationship: part_of UBERON:0003060 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pronephric duct [Term] id: UBERON:0007311 name: sputum namespace: uberon def: "Matter ejected from the lungs, bronchi, and trachea, through the mouth." [Dorlands_Medical_Dictionary:MerckSource] synonym: "expectoration" RELATED [BTO:0001297] xref: BTO:0001297 xref: GAID:1171 xref: MA:0002536 xref: MESH:A.12.200.808 xref: ncithesaurus:Sputum is_a: UBERON:0006538 ! respiratory system fluid/secretion relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0007312 name: pudendal artery namespace: uberon xref: MA:0002028 xref: SCTID:277968003 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0007314 name: superior external pudendal artery namespace: uberon xref: MA:0002029 is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0007315 name: internal pudendal artery namespace: uberon def: "The internal pudendal artery is an artery that branches off the internal iliac artery, providing blood to the external genitalia. The internal pudendal artery is the terminal branch of the anterior trunk of the internal iliac artery. It is smaller in the female than in the male." [Wikipedia:Internal_pudendal_artery] synonym: "internal pudendal vessels" RELATED [Wikipedia:Internal_pudendal_artery] synonym: "internal pudic artery" RELATED [Wikipedia:Internal_pudendal_artery] xref: FMA:18835 xref: SCTID:244309002 is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0007316 name: deep external pudendal artery namespace: uberon def: "The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery." [Wikipedia:Deep_external_pudendal_artery] xref: FMA:20739 xref: SCTID:31708008 is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0007317 name: superficial external pudendal artery namespace: uberon def: "The superficial external pudendal artery (superficial external pudic artery) arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery." [Wikipedia:Superficial_external_pudendal_artery] xref: FMA:20738 xref: SCTID:47954000 is_a: UBERON:0007312 ! pudendal artery relationship: part_of UBERON:0001308 ! external iliac artery relationship: part_of UBERON:0002060 ! femoral artery [Term] id: UBERON:0007318 name: saphenous vein namespace: uberon def: "Either of two main superficial veins of the leg, one larger than the other, that begin at the foot." [BTO:0001808] xref: BTO:0001808 xref: MA:0002215 xref: MESH:A.07.231.908.819 xref: ncithesaurus:Saphenous_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0007319 name: medial saphenous vein namespace: uberon comment: todo - check synonym: "medial accessory saphenous vein" EXACT [FMA:44322] xref: FMA:44322 xref: MA:0002173 is_a: UBERON:0007318 ! saphenous vein [Term] id: UBERON:0007321 name: lateral saphenous vein namespace: uberon comment: todo - check synonym: "lateral accessory saphenous vein" EXACT [FMA:44321] xref: FMA:44321 xref: MA:0002161 is_a: UBERON:0007318 ! saphenous vein [Term] id: UBERON:0007324 name: pancreatic lobe namespace: uberon comment: todo - check synonym: "lobulus pancreaticus" EXACT [FMA:16012] synonym: "pancreatic lobule" EXACT [FMA:16012] xref: FMA:16012 xref: MA:0000721 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0007329 name: pancreatic duct namespace: uberon def: "A duct that is part of the pancreas and connected to the duodenum." [UBERON:cjm, Wikipedia:Pancreatic_duct] comment: note that this class groups together accessory (dorsal) and main (ventral) pancreatic ducts. subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "duct of pancreas" EXACT [OBOL:automatic] synonym: "pancreas duct" EXACT [OBOL:automatic] xref: EHDAA:9194 xref: FMA:10419 xref: MA:0000124 xref: SCTID:181278006 xref: TAO:0001372 xref: ZFA:0001372 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0001264 ! pancreas relationship: part_of UBERON:0000017 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! exocrine pancreas [Term] id: UBERON:0007330 name: rhamphotheca namespace: uberon def: "thin keratinized layer of epidermis projecting from outer surface of beak[WP]." [Wikipedia:Beak#Rhamphotheca] comment: Development notes: This covering arises from the Malpighian cells of the bird's epidermis,[9] growing from plates at the base of each mandible[WP] synonym: "horny sheath" RELATED [] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0007331 name: maxillary rhamphotheca namespace: uberon synonym: "maxillary beak" RELATED [] synonym: "rhinotheca" RELATED [Wikipedia:Beak#Rhamphotheca] is_a: UBERON:0007330 ! rhamphotheca [Term] id: UBERON:0007332 name: mandibular rhamphotheca namespace: uberon synonym: "gnathotheca" RELATED [Wikipedia:Beak#Rhamphotheca] synonym: "mandibular beak" RELATED [] is_a: UBERON:0007330 ! rhamphotheca [Term] id: UBERON:0007333 name: avian pallium namespace: uberon def: "In the anatomy of animals, an avian pallium is the dorsal telencephalon of a bird's brain. Pallium of avian species tend to be relatively large, comprising ~75% of the telencephalic volume." [Wikipedia:Avian_pallium] xref: BTO:0003399 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0007334 name: nidopallium namespace: uberon def: "The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. The region was renamed to nidopallium in 2002 during the Avian Brain Nomenclature Consortium because the prior name suggested that the region was used for more primitive functions." [Wikipedia:Nidopallium, http://en.wikipedia.org/wiki/Avian_Brain_Nomenclature_Consortium] synonym: "nested pallium" RELATED [BTO:0003389] xref: BTO:0003389 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007347 name: hyperpallium namespace: uberon def: "Birds have a unique pallial structure known as the hyperpallium, once called the hyperstriatum." [Wikipedia:Hyperpallium] synonym: "hyperstriatum" RELATED [BTO:0003400] xref: BTO:0003400 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007349 name: mesopallium namespace: uberon synonym: "middle pallium" RELATED [BTO:0003405] xref: BTO:0003405 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007350 name: arcopallium namespace: uberon def: "The arcopallium refers to regions of the avian brain which partially overlap regions homologous to the amygdala of mammals. These regions have formerly been referred to as archistriatum, and before this epistriatum or amygdaloid complex[1], and a recent change of nomenclature has divided the region into the arcopallium and posterior pallial amygdala.[2] The new nomenclature, adopted in 2004, reflects a modern understanding that the avian brain is broadly similar to the mammalian brain, containing large regions homologous to the mammalian neocortex, claustrum, and pallial amygdala. The outdated nomenclature it replaced perceived the avian brain as consisting almost entirely of enlarged basal ganglia, to which more complex outer layers had been added during a progress toward mammalian intelligence." [Wikipedia:Arcopallium] synonym: "arched pallium" RELATED [BTO:0003408] synonym: "archistriatum" RELATED [BM:ARCO, http://www.avianbrain.org/archistriatum.html] xref: BM:ARCO xref: BTO:0003408 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007351 name: nucleus isthmo-opticus namespace: uberon synonym: "nucleus isthmoopticus" RELATED [BTO:0003411] xref: BTO:0003411 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007352 name: stria vascularis vasculature namespace: uberon def: "blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368] is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004522 ! vasculature of musculoskeletal system is_a: UBERON:0006876 ! vasculature of organ [Term] id: UBERON:0007354 name: cartilage of pharyngotympanic tube namespace: uberon def: "The cartilage of pharyngotympanic tube, about 24 mm. in length, is formed of a triangular plate of elastic fibrocartilage, the apex of which is attached to the margin of the medial end of the osseous portion of the tube, while its base lies directly under the mucous membrane of the nasal part of the pharynx, where it forms an elevation, the torus tubarius or cushion, behind the pharyngeal orifice of the tube. The upper edge of the cartilage is curled upon itself, being bent laterally so as to present on transverse section the appearance of a hook; a groove or furrow is thus produced, which is open below and laterally, and this part of the canal is completed by fibrous membrane. The cartilage lies in a groove between the petrous part of the temporal and the great wing of the sphenoid; this groove ends opposite the middle of the medial pterygoid plate. The cartilaginous and bony portions of the tube are not in the same plane, the former inclining downward a little more than the latter. The diameter of the tube is not uniform throughout, being greatest at the pharyngeal orifice, least at the junction of the bony and cartilaginous portions, and again increased toward the tympanic cavity; the narrowest part of the tube is termed the isthmus. The position and relations of the pharyngeal orifice are described with the nasal part of the pharynx. The mucous membrane of the tube is continuous in front with that of the nasal part of the pharynx, and behind with that of the tympanic cavity; it is covered with ciliated epithelium and is thin in the osseous portion, while in the cartilaginous portion it contains many mucous glands and near the pharyngeal orifice a considerable amount of adenoid tissue, which has been named by Gerlach the tube tonsil. The tube is opened during deglutition by the Salpingopharyngeus and Dilatator tubC&. The latter arises from the hook of the cartilage and from the membranous part of the tube, and blends below with the Tensor veli palatini." [Wikipedia:Cartilage_of_pharyngotympanic_tube] synonym: "cartilage of auditory tube" EXACT [FMA:60096] synonym: "cartilage of eustachian tube" EXACT [FMA:60096] synonym: "cartilago tubae auditivae" EXACT [FMA:60096, FMA:TA] synonym: "cartilago tubae auditoriae" EXACT [FMA:60096, FMA:TA] synonym: "pharyngotympanic tube cartilage" EXACT [FMA:60096] xref: FMA:60096 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003566 ! head connective tissue [Term] id: UBERON:0007355 name: bony part of pharyngotympanic tube namespace: uberon def: "The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion." [Wikipedia:Bony_part_of_pharyngotympanic_tube] synonym: "bony part of auditory tube" EXACT [FMA:60057] synonym: "bony part of eustachian tube" EXACT [FMA:60057] synonym: "osseous portion" RELATED [Wikipedia:Bony_part_of_pharyngotympanic_tube] synonym: "osseous portion of eustachian tube" EXACT [FMA:60057] synonym: "pars ossea (tuba auditiva)" EXACT [FMA:60057] synonym: "pars ossea (tuba auditoria)" EXACT [FMA:60057] xref: FMA:60057 is_a: UBERON:0002481 ! bone tissue is_a: UBERON:0003566 ! head connective tissue [Term] id: UBERON:0007356 name: crop namespace: uberon def: "A pouched enlargement of the gullet of many birds that serves as a receptacle for food and for its preliminary maceration." [BTO:0000301, Wikipedia:Crop_(anatomy)#Birds] comment: Editor notes: we follow WP and place as part of the esophagus. Taxon notes: Aves specific structure - consider adding functional grouping class synonym: "esophageal diverticulum" BROAD [] xref: BTO:0000301 xref: SCTID:68028003 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity organ relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0007357 name: proventriculus namespace: uberon def: "The glandular or true stomach of a bird that is situated between the crop and gizzard." [BTO:0001136, Wikipedia:Proventriculus] comment: Taxon notes: consider extending to crocodilians subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0001136 xref: GAID:1239 xref: MESH:A.13.853.710 xref: SCTID:63897003 is_a: UBERON:0000945 ! stomach [Term] id: UBERON:0007358 name: abomasum namespace: uberon def: "The fourth stomach of ruminating animals. It is also called the \"true\" stomach. It is an elongated pear-shaped sac lying on the floor of the abdomen, on the right-hand side, and roughly between the seventh and twelfth ribs. It leads to the beginning of the small intestine. (From Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.106, Wikipedia:Abomasum] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "fourth stomach" RELATED [BTO:0000024] synonym: "maw" RELATED [Wikipedia:Abomasum] synonym: "read" RELATED [Wikipedia:Abomasum] synonym: "rennet-bag" RELATED [Wikipedia:Abomasum] xref: BTO:0000024 xref: GAID:1241 xref: MESH:A.13.869.106 xref: SCTID:410028001 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png is_a: UBERON:0007366 ! ruminant stomach [Term] id: UBERON:0007359 name: ruminant forestomach namespace: uberon def: "Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, or omasum." [BTO:0000480] comment: Development/homology notes: You will still see the statement in some texts that the parts of the forestomach are derived from the embryonic esophagus, and that's the reason why (like the esophagus) they're lined with stratified squamous epithelium. This is open to doubt. While there is no doubt that the rumen, reticulum, and omasum are all derived from the embryonic foregut, there is evidence to indicate that all three come from that an area of the foregut homologous to the part that develops into the single stomach of non-ruminants. If this is so, then the forestomach can be considered diverticula (or derivatives) of the stomach proper, not the esophagus, despite the nature of the lining -- http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab21/Examples/exrumen.htm subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "forestomach" BROAD SENSU [BTO:0000480] xref: BTO:0000480 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png is_a: UBERON:0007366 ! ruminant stomach [Term] id: UBERON:0007361 name: ruminant reticulum namespace: uberon def: "The second stomach of ruminants. It lies almost in the midline in the front of the abdomen, in contact with the liver and diaphragm and communicates freely with the RUMEN via the ruminoreticular orifice. The lining of the reticulum is raised into folds forming a honeycomb pattern over the surface. (From Concise Veterinary Dictionary, 1988)" [MESH:A.13.869.697, Wikipedia:Reticulum_(anatomy)] synonym: "reticulum" BROAD SENSU [BTO:0000347] xref: BTO:0000347 xref: MESH:A.13.869.697 xref: SCTID:23703003 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png is_a: UBERON:0007359 ! ruminant forestomach relationship: part_of UBERON:0007364 ! reticulorumen [Term] id: UBERON:0007362 name: omasum namespace: uberon def: "The third stomach of ruminants, situated on the right side of the abdomen at a higher level than the fourth stomach and between this latter and the second stomach, with both of which it communicates. From its inner surface project large numbers of leaves or folia, each of which possesses roughened surfaces. In the center of each folium is a band of muscle fibers which produces a rasping movement of the leaf when it contracts. One leaf rubs against those on either side of it, and large particles of food material are ground down between the rough surfaces, preparatory to further digestion in the succeeeding parts of the alimentary canal. (Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.524, Wikipedia:Omasum] synonym: "omasum" RELATED [MESH:A.13.869.524] xref: BTO:0000348 xref: GAID:1242 xref: MESH:A.13.869.524 xref: SCTID:410028001 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png is_a: UBERON:0007359 ! ruminant forestomach [Term] id: UBERON:0007364 name: reticulorumen namespace: uberon def: "first chamber in the alimentary canal of ruminant animals. It is composed of the rumen and reticulum. The reticulum differs from the rumen with regard to the texture of its lining. The rumen wall is covered in small finger like projections called papillae, which are flattened, approximately 0.5 cm in length and 0.3 cm wide in cattle. The reticulum is lined with ridges that form a hexagonal honeycomb pattern. The ridges are approximately 0.1 - 0.2 mm wide and are raised 0.5 cm above the reticulum wall. The hexagons in the reticulum are approximately 2-5 cm wide in cattle. Despite the differences in the texture of the lining of the two parts of the reticulorumen, it represents one functional space. Microbial fermentation degrades ingested carbohydrates in the reticulorumen to the volatile fatty acids acetate, propionate and butyrate, and proteins to short peptides, amino acids and ammonia. This fermentation is anaerobic and allows the microbes in the reticulorumen to derive the energy and amino nitrogen in order that they can reproduce. Ruminants absorb the volatile fatty acids across the reticulorumen wall and use them for energy, while the microbes eventually flow out of the rumen into the remainder of the alimentary canal, where they are eventually digested and absorbed. The reticulum, at approximately 5-20 litres, is considerably smaller in capacity than the rumen, which is approximately 100-200 litres in cattle. The oesophageal groove, which links the oesophagus and the omasum is located in the reticulum[WP]." [Wikipedia:Reticulorumen] synonym: "retriculo-rumen" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0007366 ! ruminant stomach [Term] id: UBERON:0007365 name: rumen namespace: uberon def: "The first stomach of ruminants. It lies on the left side of the body, occupying the whole of the left side of the abdomen and even stretching across the median plane of the body to the right side. It is capacious, divided into an upper and a lower sac, each of which has a blind sac at its posterior extremity. The rumen is lined by mucous membrane containing no digestive glands, but mucus-secreting glands are present in large numbers. Coarse, partially chewed food is stored and churned in the rumen until the animal finds circumstances convenient for rumination. When this occurs, little balls of food are regurgitated through the esophagus into the mouth, and are subjected to a second more thorough mastication, swallowed, and passed on into other parts of the compound stomach. (From Black's Veterinary Dictionary, 17th ed)." [MESH:A.13.869.804, Wikipedia:Rumen] comment: Structure notes: There is no muscularis mucosae in the rumen synonym: "paunch" RELATED [BTO:0001194] xref: BTO:0001194 xref: GAID:1244 xref: MESH:A.13.869.804 xref: SCTID:45138000 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png is_a: UBERON:0007359 ! ruminant forestomach relationship: part_of UBERON:0007364 ! reticulorumen [Term] id: UBERON:0007366 name: ruminant stomach namespace: uberon def: "The ruminants' stomach consists of four compartments: rumen, reticulum, omasum and abomasum. The first three compartments comprise the forestomach (proventriculus). They are lined with nonglandular membrane. The fourth compartment, the abomasum comprises the true stomach of the ruminants. It is lined with glandular mucous membrane. The rumen lies on the left of the abdominal cavity, the reticulum cranially and the omasum on the right. The abomasum lies ventrally, its proximal end lies ventral to the rumen, reticulum and omasum" [http://www.onemedicine.tuskegee.edu/DigestiveSystem/Stomach/Stomach_Ruminants.html] comment: Editor notes: in future this ontology may distinguish between stomachs lined with glandular epithelium (\"true\" stomachs) and non-glandular xref: GAID:1240 xref: MESH:A.13.869 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png is_a: UBERON:0000945 ! stomach [Term] id: UBERON:0007367 name: surface of tongue namespace: uberon synonym: "tongue surface" EXACT [FMA:54647] xref: FMA:54647 is_a: UBERON:0006984 ! anatomical surface [Term] id: UBERON:0007371 name: superior surface of tongue namespace: uberon synonym: "dorsal surface of tongue" EXACT [FMA:54646] xref: FMA:54646 is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007373 name: inferior surface of tongue namespace: uberon synonym: "ventral surface of tongue" EXACT [FMA:54648] xref: FMA:54648 xref: SCTID:362100003 is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007374 name: incus cartilage condensation namespace: uberon xref: EMAPA:18228 is_a: UBERON:0005863 ! cartilaginous condensation [Term] id: UBERON:0007375 name: palate namespace: uberon subset: grouping_class ! Subset consisting of classes creating for grouping purposes xref: AAO:0010535 xref: SCTID:181227004 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0007376 name: outer epithelial layer namespace: uberon def: "The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. The epidermis of a more complex invertebrate is just one-layer deep, and may be protected by a non-cellular cuticle. The epidermis of a higher vertebrate has many layers, and the outer layers are reinforced with keratin and then die[WP]." [Wikipedia:Epidermis_(zoology)] subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "epidermis" NARROW [GO:0008544] synonym: "hypodermis" RELATED INCONSISTENT [GO:0008544, WBbt:0005733] synonym: "outer epidermal layer" EXACT [] xref: FBbt:00004993 xref: HAO:0000298 xref: TADS:0000109 xref: WBbt:0005733 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0003102 ! surface structure is_a: UBERON:0000485 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! simple columnar epithelium relationship: part_of UBERON:0002416 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! integumental system [Term] id: UBERON:0007377 name: stratum compactum namespace: uberon def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network." [ISBN10:0073040584, ZFIN:ZDB-PUB-040726-12] comment: connective tissue in the skin is usually diffuse and irregular, although in some species collagen bundles are arranged in a distinct ordered layer in the dermis synonym: "dermal deep region" EXACT [ZFA:0001182] xref: AAO:0010600 xref: TAO:0001182 xref: ZFA:0001182 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0007378 name: egg yolk namespace: uberon def: "The yellow spheroidal mass of stored food that forms the inner portion of the egg of a bird or reptile and is surrounded by the white." [BTO:0000371, Wikipedia:Yolk] synonym: "yolk" RELATED [BTO:0000371] xref: AAO:0010579 xref: BTO:0000371 xref: MESH:A.16.631.325 xref: ncithesaurus:Egg_Yolk is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0007379 ! egg [Term] id: UBERON:0007379 name: egg namespace: uberon def: "The hard-shelled reproductive body produced by a bird and especially by the common domestic chicken; also: its contents used as food." [BTO:0000369, Wikipedia:Egg_(biology)] xref: BTO:0000369 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0007380 name: dermal scale namespace: uberon def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:curator, Wikipedia:Scale_(zoology)#Fish_scales] synonym: "fish scale" RELATED [Wikipedia:Scale_(zoology)#Fish_scales] synonym: "scales" EXACT PLURAL [ZFA:0000277] xref: AAO:0010056 xref: TAO:0000277 xref: VAO:0000048 xref: ZFA:0000277 is_a: UBERON:0002542 ! scale relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0007381 name: epidermal scale namespace: uberon def: "." [Wikipedia:Reptile_scales] is_a: UBERON:0002542 ! scale is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0007383 name: enveloping layer of ectoderm namespace: uberon def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originallu this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm." [ISBN:9780878932504, ZFIN:ZDB-PUB-961014-576] synonym: "EVL" EXACT [ZFA:0000086] synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576] xref: EFO:0003425 xref: TAO:0000086 xref: ZFA:0000086 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004750 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! blastoderm [Term] id: UBERON:0007384 name: limb/fin lymph vessel namespace: uberon xref: ZFA:0005300 is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0007304 ! limb/fin vasculature [Term] id: UBERON:0007385 name: fore limb/fin lymph vessel namespace: uberon xref: TAO:0005302 xref: ZFA:0005302 is_a: UBERON:0007384 ! limb/fin lymph vessel relationship: part_of UBERON:0007302 ! fore limb/fin vasculature [Term] id: UBERON:0007386 name: hind limb/fin lymph vessel namespace: uberon is_a: UBERON:0007384 ! limb/fin lymph vessel [Term] id: UBERON:0007389 name: limb/fin fin cartilage namespace: uberon xref: TAO:0001543 xref: ZFA:0001543 is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0007390 name: fore limb/fin cartilage namespace: uberon xref: TAO:0000257 xref: ZFA:0000257 is_a: UBERON:0007389 ! limb/fin fin cartilage relationship: part_of UBERON:0007272 ! fore limb/fin skeleton [Term] id: UBERON:0007391 name: hind limb/fin cartilage namespace: uberon xref: TAO:0001459 xref: ZFA:0001459 is_a: UBERON:0007389 ! limb/fin fin cartilage relationship: part_of UBERON:0007273 ! hind limb/fin skeleton [Term] id: UBERON:0007412 name: midbrain raphe nuclei namespace: uberon def: "Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe." [NIF_GrossAnatomy:birnlex_1676] comment: todo - check. note BTO class is placed here as it is placed in hindbrain synonym: "midbrain raphe" EXACT [NIF_GrossAnatomy:birnlex_1676] synonym: "midbrain raphe nuclei" EXACT [NIF_GrossAnatomy:birnlex_1676] synonym: "nuclei raphes tegmenti mesencephali" EXACT [FMA:77787, FMA:TA] synonym: "raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787] synonym: "raphe nucleus" BROAD [BTO:0003387] synonym: "set of raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787] xref: ABA:RAmb xref: BTO:0003387 xref: FMA:77787 xref: NIF_GrossAnatomy:birnlex_1676 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004684 ! raphe nuclei property_value: "spatially_disjoint_from" UBERON:0001965 property_value: "spatially_disjoint_from" UBERON:0002142 [Term] id: UBERON:0007413 name: nucleus of pontine reticular formation namespace: uberon synonym: "pontine reticular formation nucleus" EXACT [FMA:72245] xref: ABA:PRNr xref: FMA:72245 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus [Term] id: UBERON:0007414 name: nucleus of midbrain tegmentum namespace: uberon xref: FMA:258768 is_a: UBERON:0009661 ! midbrain nucleus [Term] id: UBERON:0007415 name: nucleus of midbrain reticular formation namespace: uberon synonym: "midbrain reticular formation nucleus" EXACT [FMA:62443] synonym: "midbrain reticular nucleus" EXACT [ABA:MRN] xref: ABA:MRN xref: FMA:62443 is_a: UBERON:0007414 ! nucleus of midbrain tegmentum [Term] id: UBERON:0007416 name: cerebellar peduncle namespace: uberon xref: FMA:272298 xref: MA:0002742 xref: SCTID:362417003 is_a: UBERON:0007417 ! peduncle of neuraxis is_a: UBERON:0003544 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! brain white matter relationship: part_of UBERON:0002474 ! cerebellar peduncular complex [Term] id: UBERON:0007417 name: peduncle of neuraxis namespace: uberon synonym: "neuraxis peduncle" EXACT [FMA:83860] xref: FMA:83860 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0007418 name: decussation of neuraxis namespace: uberon synonym: "neuraxis decussation" EXACT [FMA:83858] xref: FMA:83858 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0007425 name: decussation of diencephalon namespace: uberon synonym: "diencephalon decussation" EXACT [FMA:62446] xref: FMA:62446 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0007440 name: stratum intermedium namespace: uberon def: "The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ." [Wikipedia:Stratum_intermedium] xref: BTO:0005009 xref: ncithesaurus:Stratum_Intermedium is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0007473 name: cavity of vesicle namespace: uberon alt_id: EHDAA2:0003079 def: "The space within an epithelial sphere." [AEO:JB] xref: AEO:0000079 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0007475 name: matrix-based tissue namespace: uberon alt_id: EHDAA2:0003081 def: "A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified." [AEO:JB] xref: AEO:0000081 xref: EHDAA2:0003081 is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0007486 name: fluid-based anatomical entity namespace: uberon alt_id: EHDAA2:0003095 def: "Fluid anatomical entity containing cells." [AEO:JB] xref: AEO:0000095 xref: EHDAA2:0003095 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0007490 name: keratin-based acellular structure namespace: uberon alt_id: EHDAA2:0003099 def: "Acellular anatomical structure whose predominant constituent is keratin." [AEO:JB] xref: AEO:0000099 xref: EHDAA2:0003099 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0007491 name: chitin-based acellular structure namespace: uberon alt_id: EHDAA2:0003100 def: "Acellular anatomical structure whose predominant constituent is chitin." [AEO:JB] xref: AEO:0000100 xref: EHDAA2:0003100 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0007497 name: developing epithelial placode namespace: uberon alt_id: EHDAA2:0003112 def: "A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF] synonym: "epithelial placode" EXACT [AEO:0000112] xref: AEO:0000112 xref: AEO:0000218 xref: EHDAA2:0003112 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0001048 ! primordium [Term] id: UBERON:0007499 name: epithelial sac namespace: uberon def: "An epithelial tube that is open at one end only." [AEO:JB] xref: AEO:0000115 xref: EHDAA2:0003115 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0009856 ! sac [Term] id: UBERON:0007500 name: epithelial tube open at both ends namespace: uberon def: "An epithelial tube open at both ends that allows fluid flow." [AEO:JB] xref: AEO:0000116 xref: RETIRED_EHDAA2:0003116 is_a: UBERON:0003914 ! epithelial tube [Term] id: UBERON:0007501 name: arborizing epithelial duct system namespace: uberon alt_id: EHDAA2:0003117 def: "A collection of connected epithelial tubes with a single portal." [AEO:JB] synonym: "arborising epithelial duct system" EXACT [AEO:0000117] xref: AEO:0000117 xref: EHDAA2:0003117 is_a: UBERON:0000480 ! anatomical group [Term] id: UBERON:0007502 name: epithelial plexus namespace: uberon alt_id: EHDAA2:0003118 def: "A complex of interlinking epithelial tubules." [AEO:JB] xref: AEO:0000118 xref: EHDAA2:0003118 is_a: UBERON:0000480 ! anatomical group [Term] id: UBERON:0007503 name: epithelial vesicle namespace: uberon alt_id: EHDAA2:0003119 def: "A closed epithelium with a lumen." [AEO:JB] xref: AEO:0000119 xref: EHDAA2:0003119 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0007521 name: smooth muscle sphincter namespace: uberon def: "A ring of smooth muscle cells whose contraction closes the opening of the ring." [AEO:JB] xref: AEO:0000143 xref: EHDAA2:0003143 xref: SCTID:362915001 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004590 ! sphincter muscle [Term] id: UBERON:0007522 name: striated muscle sphincter namespace: uberon def: "A ring of striated muscle cells whose contraction closes the opening of the ring." [AEO:JB] xref: AEO:0000144 xref: EHDAA2:0003144 is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:0004590 ! sphincter muscle [Term] id: UBERON:0007524 name: dense mesenchyme tissue namespace: uberon alt_id: EHDAA2:0003146 def: "Mesenchyme with little extracellular matrix." [AEO:JB] xref: AEO:0000146 xref: EHDAA2:0003146 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0007529 name: loose mesenchyme tissue namespace: uberon alt_id: EHDAA2:0003151 def: "Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix." [AEO:JB] xref: AEO:0000151 xref: EHDAA2:0003151 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0007530 name: migrating mesenchyme population namespace: uberon alt_id: EHDAA2:0003152 def: "Mesenchymal cells that are migrating." [AEO:JB] comment: Editors note: this class will be an important part of the NC reorganization xref: AEO:0000152 xref: EHDAA2:0003152 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0007540 name: surface sense organ namespace: uberon is_obsolete: true comment: obsoleted due to incorrect logical definition. A new class with the same name may be created in the future. xref: AEO:0000173 xref: EHDAA2:0003173 [Term] id: UBERON:0007567 name: regenerating anatomical structure namespace: uberon alt_id: EHDAA2:0003233 def: "An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers." [AEO:JB] synonym: "regenerating tissue" RELATED [ZFA:0005147] xref: AEO:0000200 xref: EHDAA2:0003233 xref: XAO:0004059 xref: ZFA:0005147 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0007573 name: migrating epithelium namespace: uberon alt_id: EHDAA2:0003251 def: "An epithelium that extends its surface area by peripheral movement." [AEO:JB] xref: AEO:0000206 xref: EHDAA2:0003251 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0007574 name: apical epidermal cap namespace: uberon synonym: "apical epidermal caps" EXACT PLURAL [ZFA:0005148] xref: TAO:0005148 xref: ZFA:0005148 xref: ZFIN:ZDB-ANAT-070928-184 is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:0008897 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! fin [Term] id: UBERON:0007589 name: ciliated columnar oviduct epithelium namespace: uberon comment: in FMA, epithelium of uterine tube is a subclass of ciliated columnar epithelium. MA introduces subtypes: ciliated columnar and cuboidal. We map the FMA type according to its relationships, not its label xref: FMA:62016 xref: MA:0001719 is_a: UBERON:0004804 ! oviduct epithelium is_a: UBERON:0007592 ! ciliated columnar epithelium [Term] id: UBERON:0007590 name: cuboidal oviduct epithelium namespace: uberon xref: MA:0001720 is_a: UBERON:0004804 ! oviduct epithelium [Term] id: UBERON:0007592 name: ciliated columnar epithelium namespace: uberon def: "Simple columnar epithelium in which the luminal side of the cells bears cilia. Examples: epithelium of trachea, epithelium of uterine tube.[FMA]" [FMA:64798] xref: FMA:64798 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0007601 ! ciliated epithelium [Term] id: UBERON:0007601 name: ciliated epithelium namespace: uberon is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0007602 name: stratified columnar epithelium namespace: uberon def: "Multilaminar epithelium which consists of more than one layer of columnar cells, only one layer of which is in contact with a basement membrane. Examples: ciliated stratified columnar epithelium, epithelium of lactiferous sinus.[FMA]" [FMA:45564] synonym: "epithelium stratificatum columnare" EXACT [FMA:45564] xref: FMA:45564 xref: ncithesaurus:Stratified_Columnar_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium [Term] id: UBERON:0007603 name: stratified cuboidal epithelium namespace: uberon def: "Stratified cuboidal epithelia is a rare type of epithelial tissue composed of cuboidally shaped cells arranged in multiple layers. They protect areas such as ducts of sweat glands, mammary glands, and salivary glands." [Wikipedia:Stratified_cuboidal_epithelium] synonym: "epithelium stratificatum cuboideum" EXACT [FMA:63912] xref: FMA:63912 xref: ncithesaurus:Stratified_Cuboidal_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0010077 ! cuboidal epithelium [Term] id: UBERON:0007606 name: ciliated stratified columnar epithelium namespace: uberon xref: FMA:67521 is_a: UBERON:0007601 ! ciliated epithelium is_a: UBERON:0007602 ! stratified columnar epithelium [Term] id: UBERON:0007607 name: small intestine villus namespace: uberon xref: MA:0001563 is_a: UBERON:0001213 ! intestinal villus relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0007610 name: tibial artery namespace: uberon def: "The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and foot. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot." [MESH:A.07.231.114.895] xref: GAID:514 xref: MA:0002067 xref: MESH:A.07.231.114.895 xref: SCTID:181351007 xref: ncithesaurus:Tibial_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! hindlimb blood vessel relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0007612 name: extensor digitorum communis namespace: uberon def: "A muscle on the back of the forearm that extends the fingers and wrist." [BTO:0001343, Wikipedia:Extensor_digitorum_muscle] synonym: "extensor digitorum" EXACT [FMA:38500] xref: BTO:0001343 xref: FMA:38500 xref: MA:0002293 xref: ncithesaurus:Extensor_Digitorum_Communis is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0004254 ! forelimb zeugopod muscle relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0007613 name: extensor digitorum lateralis namespace: uberon comment: Origin distal to extensor digitorum communis. The part of this muscle that gives a tendon to the 5th digit is comparable to the extensor digiti quinti proprius of the human [ISBN10:9780716717553] xref: MA:0002294 xref: ncithesaurus:Extensor_Digitorum_Lateralis is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0004254 ! forelimb zeugopod muscle relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0007614 name: extensor digiti minimi namespace: uberon def: "The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the hand, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]." [Wikipedia:Extensor_digiti_minimi_muscle, http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml] comment: The tendon of insertion is sometimes divided and gives a slip to the fourth digit. An ulnar slip has been observed to end on the base of the fifth metacarpal, thus exactly reproducing the arrangement of the serially homologous slip known as peroneus tertius in the leg. The muscle may be absent in rare cases, but fusion with extensor digitorum is frequent, in which case the tendon comes from the common extensor. synonym: "extensor digiti minimi" RELATED [Wikipedia:Extensor_digiti_minimi_muscle] synonym: "extensor digiti minimi %28hand%29" RELATED [Wikipedia:Extensor_digiti_minimi_muscle] synonym: "extensor digiti quinti proprius" RELATED [Wikipedia:Extensor_digiti_minimi_muscle, http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml] xref: FMA:38503 is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0004254 ! forelimb zeugopod muscle relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0007615 name: prostate gland ventral lobe namespace: uberon def: "Prostate gland lobe that in the mouse has the following characteristics: grossly, clear, gelatinous, and leaf-like; originates ventrally and wraps incompletely around the urethra dorsally, bilaterally. Simple columnar epithelium with the least amount of infolding. Secretory cells are oval and have slightly foamy cytoplasm; nuclei and basal nucleoli are inconspicuous. The secretion is pale and homogeneous. The stroma is thin" [PMID:15163300] xref: BTO:0000490 xref: MA:0001740 is_a: UBERON:0001328 ! lobe of prostate [Term] id: UBERON:0007616 name: synovial tissue namespace: uberon def: "A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]." [BTO:0001338, http://www.britannica.com/EBchecked/topic/578563/synovial-tissue] xref: BTO:0001338 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0007617 name: synovial cavity of joint namespace: uberon synonym: "articular cavity (synovial joint)" EXACT [FMA:11356] synonym: "cavitas articularis (junctura synovialis)" EXACT [FMA:11356] synonym: "cavity of synovial joint" EXACT [FMA:11356] xref: FMA:11356 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0007618 name: synovial cavity of hip joint namespace: uberon xref: EMAPA:19021 xref: FMA:9701 is_a: UBERON:0007617 ! synovial cavity of joint relationship: part_of UBERON:0001486 ! hip joint [Term] id: UBERON:0007619 name: limiting membrane of retina namespace: uberon comment: MA does treat internal/external limiting membranes as layers - these are classified as laminae. We do not follow this convention. However, we do following MA is grouping these terms together synonym: "retina lamina" EXACT [MA:0001318] xref: MA:0001318 xref: SCTID:280667001 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0007622 name: pecten oculi namespace: uberon def: "a comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body." [Wikipedia:Pecten_oculi] is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001776 ! choroid [Term] id: UBERON:0007623 name: comb and wattle namespace: uberon def: "A wattle is a fleshy dewlap or caruncle hanging from various parts of the head or neck in several groups of birds, goats and other animals. In some birds the caruncle is erectile tissue." [Wikipedia:Wattle_(anatomy)] synonym: "comb" RELATED [GAID:1207] synonym: "wattle" RELATED [GAID:1207] synonym: "wattles and comb" RELATED [GAID:1207] xref: GAID:1207 xref: MESH:A.13.242 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0007625 name: pigment epithelium of eye namespace: uberon def: " epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200] synonym: "eye pigment epithelium" RELATED [MESH:A.09.371.670] xref: GAID:907 xref: MESH:A.09.371.670 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0007626 name: subparaventricular zone namespace: uberon xref: ABA:SBPV xref: MA:0000842 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003048 ! regional part of hypothalamus relationship: part_of UBERON:0002272 ! medial zone of hypothalamus property_value: "spatially_disjoint_from" UBERON:0001934 property_value: "spatially_disjoint_from" UBERON:0002034 property_value: "spatially_disjoint_from" UBERON:0002219 property_value: "spatially_disjoint_from" UBERON:0002625 property_value: "spatially_disjoint_from" UBERON:0002689 property_value: "spatially_disjoint_from" UBERON:0002690 [Term] id: UBERON:0007627 name: magnocellular nucleus namespace: uberon xref: ABA:MA xref: MA:0000928 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0006514 ! pallidum property_value: "spatially_disjoint_from" UBERON:0003017 [Term] id: UBERON:0007628 name: lateral septal complex namespace: uberon comment: todo - split nucleus and complex xref: ABA:LSX xref: FMA:61878 xref: MA:0000933 is_a: UBERON:0002663 ! septal nuclear complex relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:0007629 name: medial septal complex namespace: uberon xref: ABA:MSC xref: FMA:61879 xref: MA:0000934 is_a: UBERON:0002663 ! septal nuclear complex property_value: "spatially_disjoint_from" UBERON:0002977 [Term] id: UBERON:0007630 name: septohippocampal nucleus namespace: uberon xref: ABA:SH xref: MA:0000939 is_a: UBERON:0002663 ! septal nuclear complex relationship: part_of UBERON:0007628 ! lateral septal complex property_value: "spatially_disjoint_from" UBERON:0001878 property_value: "spatially_disjoint_from" UBERON:0002667 [Term] id: UBERON:0007631 name: accessory olfactory bulb glomerular layer namespace: uberon xref: ABA:AOBgl xref: MA:0000967 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0004069 ! accessory olfactory bulb [Term] id: UBERON:0007632 name: barrington's nucleus namespace: uberon xref: ABA:B xref: MA:0001011 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons property_value: "spatially_disjoint_from" UBERON:0002143 property_value: "spatially_disjoint_from" UBERON:0002147 property_value: "spatially_disjoint_from" UBERON:0002149 property_value: "spatially_disjoint_from" UBERON:0002151 property_value: "spatially_disjoint_from" UBERON:0002633 property_value: "spatially_disjoint_from" UBERON:0002682 property_value: "spatially_disjoint_from" UBERON:0002963 property_value: "spatially_disjoint_from" UBERON:0002968 property_value: "spatially_disjoint_from" UBERON:0003011 [Term] id: UBERON:0007633 name: nucleus of trapezoid body namespace: uberon comment: consider splitting into nucleus and complex xref: ABA:NTB xref: BM:NTB xref: FMA:84023 xref: MA:0001018 xref: NIF_GrossAnatomy:birnlex_745 xref: SCTID:362405000 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons property_value: "spatially_disjoint_from" UBERON:0002126 property_value: "spatially_disjoint_from" UBERON:0002162 property_value: "spatially_disjoint_from" UBERON:0002591 property_value: "spatially_disjoint_from" UBERON:0002610 property_value: "spatially_disjoint_from" UBERON:0002864 property_value: "spatially_disjoint_from" UBERON:0002866 property_value: "spatially_disjoint_from" UBERON:0002873 [Term] id: UBERON:0007634 name: parabrachial nucleus namespace: uberon xref: ABA:PB xref: BM:PB xref: MA:0001019 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons property_value: "spatially_disjoint_from" UBERON:0002128 property_value: "spatially_disjoint_from" UBERON:0002597 property_value: "spatially_disjoint_from" UBERON:0006840 [Term] id: UBERON:0007635 name: nucleus of medulla oblongata namespace: uberon xref: FMA:258772 xref: SCTID:304943004 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus [Term] id: UBERON:0007637 name: hippocampus stratum lucidum namespace: uberon def: "A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000)." [Wikipedia:Stratum_lucidum_of_hippocampus, nif_annot:NeuroNames_defSource] synonym: "stratum lucidum" BROAD [NIF_GrossAnatomy:birnlex_4108] xref: NIF_GrossAnatomy:birnlex_4108 xref: ncithesaurus:Stratum_Lucidum is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0007639 name: hippocampus alveus namespace: uberon def: "Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26)." [NIF_GrossAnatomy:birnlex_1510] comment: todo - check xref: ncithesaurus:Alveus synonym: "alveus" EXACT [NIF_GrossAnatomy:birnlex_1510] synonym: "alveus of hippocampus" EXACT [FMA:83867] synonym: "neuraxis alveus" EXACT [FMA:83867] xref: FMA:83867 xref: NIF_GrossAnatomy:birnlex_1510 xref: SCTID:369094002 xref: ncithesaurus:Alveus is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0007640 name: hippocampus stratum lacunosum moleculare namespace: uberon def: "A cytoarchitectural term denoting the outermost layer of the hippocampus (Stephan-75) (NeuroNames)." [nif_annot:NeuroNames_defSource] synonym: "lacunar-molecular layer of hippocampus" EXACT [FMA:83149] synonym: "stratum lacunosum moleculare" EXACT [NIF_GrossAnatomy:birnlex_1359] synonym: "stratum lacunosum-moleculare" EXACT [ABA:ABA] xref: FMA:83149 xref: NIF_GrossAnatomy:birnlex_1359 is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0007641 name: trigeminal nuclear complex namespace: uberon def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. There is also a distinct trigeminal motor nucleus that is medial to the chief sensory nucleus[WP]." [Wikipedia:Trigeminal_nerve_nuclei] comment: In MA and FMA this is part of the pons / pontime tegmentum. We weaken this to overlaps to avoid inconsistency. In NIF this is a composite structure spanning multiple regions, which is more appropriate. synonym: "trigeminal nuclei" EXACT [FMA:71248] xref: BM:V xref: FMA:71248 xref: NIF_GrossAnatomy:birnlex_4096 is_a: UBERON:0007245 ! nuclear complex of neuraxis [Term] id: UBERON:0007642 name: ligamentum arteriosum namespace: uberon def: "a small ligament attached to the superior surface of the pulmonary trunk and the inferior surface of the aortic arch. It is a nonfunctional vestige of the ductus arteriosus, and is formed within three weeks of birth. The ligamentum arteriosum is closely related to the left recurrent laryngeal nerve, a branch of the left vagus nerve. After splitting from the left vagus nerve, the left recurrent laryngeal loops around the aortic arch posterior to the ligamentum arteriosum, after which it ascends to the larynx[WP]." [Wikipedia:Ligamentum_arteriosum] synonym: "Botallo's duct" EXACT [FMA:13421] synonym: "Botallo's ligament" EXACT [FMA:13421] synonym: "Harvey's ligament" EXACT [FMA:13421] synonym: "arterial ligament" RELATED [Wikipedia:Ligamentum_arteriosum] xref: FMA:13421 xref: SCTID:198009004 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0006591 ! transformed artery [Term] id: UBERON:0007643 name: node of ligamentum arteriosum namespace: uberon def: "an inconstant lymph node of the anterior mediastinal group located adjacent to the ligamentum arteriosum." [http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum] synonym: "Botallo's node" EXACT [FMA:74033] synonym: "ligamentum arteriosum node" EXACT [FMA:74033] synonym: "lymph node of ligamentum arteriosum" EXACT [UBERON:cjm] synonym: "nodus ligamenti arteriosi" EXACT [http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum] xref: FMA:74033 is_a: UBERON:0002524 ! mediastinal lymph node [Term] id: UBERON:0007644 name: thoracic lymph node namespace: uberon def: "A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes" [Obol:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] synonym: "lymph node of thorax" EXACT [FMA:12772] xref: FMA:12772 xref: SCTID:196374005 xref: ncithesaurus:Thoracic_Lymph_Node is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0007645 name: future meninx namespace: uberon comment: Development notes: previously had a develops_from link to mesoderm but this had no source. The zebrafish primitive meninx develops from neural crest[RCN:2012] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007646 name: endomeninx namespace: uberon def: "the layer of embryonic mesoderm from which the arachnoid coat and pia mater of the brain develop." [http://www.merriam-webster.com/medical/endomeninx] is_a: UBERON:0007645 ! future meninx [Term] id: UBERON:0007647 name: ectomeninx namespace: uberon def: "the layer of mesoderm from which the dura mater and much of the membrane bone of the skull develop in the higher vertebrate embryo." [http://www.merriam-webster.com/medical/ectomeninx] is_a: UBERON:0007645 ! future meninx [Term] id: UBERON:0007650 name: esophagogastric junction namespace: uberon def: "the junction between the esophagus and the stomach epithelium" [http://www.thefreedictionary.com/esophagogastric+junction] synonym: "cardioesophageal junction" EXACT [FMA:9434] synonym: "esophageal sphincter" RELATED [MESH:A.03.365.414] synonym: "esophagogastric junction" RELATED [MESH:A.03.365.414] synonym: "gastroesophageal junction" EXACT [FMA:9434] xref: BTO:0004364 xref: FMA:9434 xref: GAID:292 xref: MESH:A.03.365.414 xref: SCTID:362130006 xref: ncithesaurus:Gastroesophageal_Junction is_a: UBERON:0007651 ! anatomical junction [Term] id: UBERON:0007651 name: anatomical junction namespace: uberon def: "Anatomical structure in which parts of two or more anatomical structures establish physical continuity with one another or intermingle their component parts. Examples: gastroesophageal junction, line alba, knee joint.[FMA]" [FMA:5898] subset: upper_level ! abstract upper-level terms not directly useful for analysis xref: FMA:5898 xref: SCTID:91833003 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0007652 name: esophageal sphincter namespace: uberon comment: editor note - check for specific subtypes across species. Note mammals have upper and lower, but lower is really part of cardia and thus is not classified under here synonym: "oesophagial sphincter" EXACT [ZFA:0000415] xref: SCTID:277765007 xref: ZFA:0000415 is_a: UBERON:0003832 ! esophagus muscle is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0000933 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pharyngeal muscle [Term] id: UBERON:0007653 name: capillary loop nephron namespace: uberon def: "Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft." [ZFIN:curator] comment: TODO synonym: "developing capillary loop stage nephron" EXACT [EMAPA:28506] synonym: "stage III nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Capillary_loop.html] xref: EMAPA:28506 xref: ZFA:0005590 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0007654 name: maturing nephron namespace: uberon comment: TODO synonym: "stage IV nephron" RELATED [EMAPA:28485] xref: EMAPA:28485 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0007656 name: lateral recess of fourth ventricle namespace: uberon def: "The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space." [Wikipedia:Lateral_recess] synonym: "lateral recess" BROAD [EMAPA:17257] xref: EMAPA:17257 xref: FMA:78470 xref: SCTID:369283008 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002422 ! fourth ventricle disjoint_from: UBERON:0008902 ! lateral recess of third vetricle [Term] id: UBERON:0007657 name: anular ligament of radius namespace: uberon def: "The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna" [Wikipedia:Anular_ligament_of_radius] synonym: "annular ligament of radius" EXACT [FMA:38872] synonym: "anular ligament" BROAD [EMAPA:19322] synonym: "ligamentum anulare radii" EXACT [FMA:38872, FMA:TA] synonym: "orbicular ligament of radius" EXACT [FMA:38872] xref: EMAPA:19322 xref: FMA:38872 xref: SCTID:182394000 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003574 ! elbow connective tissue is_a: UBERON:0003575 ! wrist connective tissue is_a: UBERON:0003598 ! hand connective tissue is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001490 ! elbow joint relationship: part_of UBERON:0007165 ! proximal radio-ulnar joint [Term] id: UBERON:0007679 name: intersegmental vein namespace: uberon def: "a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein[web]. Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel[ZFA]." [ZFIN:ZDB-PUB-030908-4, http://www.medilexicon.com/medicaldictionary.php?t=97310] synonym: "ISV" BROAD [ZFA:0001057] synonym: "intersegmental pulmonary vein" EXACT [FMA:76965] synonym: "segmental vein" RELATED [EMAPA:26056] xref: EMAPA:26056 xref: FMA:76965 xref: SCTID:361448009 xref: ZFA:0001057 is_a: UBERON:0002016 ! pulmonary vein [Term] id: UBERON:0007681 name: facial neural crest namespace: uberon def: "Cranial neural crest that is part of the facial region." [ZFA:0000875] xref: EMAPA:16311 xref: VHOG:0001209 xref: ZFA:0000875 is_a: UBERON:0003099 ! cranial neural crest is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: UBERON:0007683 name: lateral mesenchyme derived from mesoderm namespace: uberon xref: EFO:0003590 xref: EMAPA:16409 xref: ZFA:0000905 is_a: UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0007684 name: uriniferous tubule namespace: uberon def: "functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule." [ISBN10:0073040584] xref: FMA:17691 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0007685 name: region of nephron tubule namespace: uberon comment: note - consider moving MA:0000377 renal tubule here, as it includes the various segments (proximal etc) as subclasses, not parts synonym: "renal tubule region" EXACT [FMA:17692] xref: FMA:17692 is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004810 ! nephron tubule epithelium relationship: part_of UBERON:0001231 ! nephron tubule [Term] id: UBERON:0007686 name: Hatschek's pit/nephridium namespace: uberon is_obsolete: true [Term] id: UBERON:0007687 name: kidney field namespace: uberon def: "region of the embryo into the area in which the kidney rudiment will develop." [GO:0072004, GOC:mtg_kidney_jan10] synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007688 name: anlage namespace: uberon def: "Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue." [FBbt:00005426, JB:DEF, Wikipedia:Anlage_(biology)] synonym: "field" RELATED [] xref: AEO:0000170 xref: EHDAA2:0003170 xref: FBbt:00005426 is_a: UBERON:0000479 ! tissue is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0007689 name: thyroid diverticulum namespace: uberon def: "endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]." [MP:0004662, Wikipedia:Thyroid_diverticulum] is_a: UBERON:0001048 ! primordium [Term] id: UBERON:0007690 name: early pharyngeal endoderm namespace: uberon def: "." [http://dev.biologists.org/content/128/22/4573.full] comment: relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm' synonym: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457] synonym: "pharyngeal arch endoderm" RELATED [] synonym: "pharyngeal endoderm" RELATED [ZFA:0001104] synonym: "pharyngeal region endoderm" RELATED [EHDAA2:0001456] xref: EFO:0003626 xref: EHDAA2:0001457 xref: EHDAA:962 xref: ZFA:0001104 is_a: UBERON:0000925 ! endoderm is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0008814 ! pharyngeal system relationship: part_of UBERON:0009722 ! entire pharyngeal arch endoderm relationship: part_of UBERON:0001042 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! chordate pharynx [Term] id: UBERON:0007691 name: gustatory pore namespace: uberon def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project. " [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "taste pore" EXACT [FMA:63589] xref: FMA:63589 xref: SCTID:368724008 xref: http://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg xref: ncithesaurus:Taste_Pore is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0001727 ! taste bud [Term] id: UBERON:0007692 name: nucleus of thalamus namespace: uberon comment: todo - consider splitting nucleus and complex synonym: "nuclear complex of thalamus" EXACT [FMA:256693] xref: BTO:0002452 xref: FMA:256693 xref: MA:0002992 xref: SCTID:279115000 is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0006569 ! diencephalic nucleus [Term] id: UBERON:0007693 name: caroticotympanic artery namespace: uberon def: "The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery." [Wikipedia:Caroticotympanic_arteries] synonym: "caroticotympanic branch" RELATED [Wikipedia:Caroticotympanic_arteries] xref: FMA:49828 xref: SCTID:148470005 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0007699 name: tract of spinal cord namespace: uberon synonym: "spinal cord tract" EXACT [FMA:75683] xref: FMA:75683 xref: ncithesaurus:Spinal_Cord_Tract is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0007702 name: tract of brain namespace: uberon comment: todo - check NIF placement synonym: "brain tract" EXACT [FMA:83848] xref: FMA:83848 xref: NIF_GrossAnatomy:birnlex_1649 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0007703 name: spinothalamic tract namespace: uberon def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO]." [Wikipedia:Spinothalamic_tract] xref: NIF_GrossAnatomy:nlx_anat_1010017 xref: SCTID:280417000 is_a: UBERON:0007702 ! tract of brain [Term] id: UBERON:0007707 name: superior cerebellar peduncle of midbrain namespace: uberon def: "Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM)." [NIF_GrossAnatomy:birnlex_1162] synonym: "SCPMB" EXACT [NIF_GrossAnatomy:birnlex_1162] synonym: "superior cerebellar peduncle of midbrain" EXACT [NIF_GrossAnatomy:birnlex_1162] xref: NIF_GrossAnatomy:birnlex_1162 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0002150 ! superior cerebellar peduncle [Term] id: UBERON:0007709 name: superior cerebellar peduncle of pons namespace: uberon comment: note that FMA:72495 most likely denotes this class rather than the more generic parent, due to the part of relationship to pontine tegmentum. synonym: "SCPP" EXACT [NIF_GrossAnatomy:birnlex_1726] synonym: "superior cerebellar peduncle of pons" EXACT [NIF_GrossAnatomy:birnlex_1726] xref: FMA:72495 xref: NIF_GrossAnatomy:birnlex_1726 xref: NeuroNames:1007150190 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002150 ! superior cerebellar peduncle relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0007710 name: intermediate nucleus of lateral lemniscus namespace: uberon comment: todo - check synonym: "nucleus of the lateral lemniscus, horizontal part" EXACT [ABA:NLLh] xref: ABA:NLLh xref: FMA:77485 is_a: UBERON:0006840 ! nucleus of lateral lemniscus [Term] id: UBERON:0007711 name: sixth cervical dorsal root ganglion namespace: uberon synonym: "sixth cervical dorsal root ganglia" EXACT [FMA:6319] synonym: "sixth cervical dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2608] synonym: "sixth cervical spinal ganglion" EXACT [FMA:6319] xref: EMAPA:25159 xref: FMA:6319 xref: NIF_GrossAnatomy:birnlex_2608 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0007712 name: fourth thoracic spinal ganglion namespace: uberon subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series in an individual organism rather than by homology synonym: "forth thoracic dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2614] synonym: "fourth thoracic dorsal root ganglion" EXACT [FMA:6324, UBERON:cjm] xref: EMAPA:25177 xref: FMA:6324 xref: NIF_GrossAnatomy:birnlex_2614 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0007713 name: fourth sacral spinal ganglion namespace: uberon synonym: "forth sacral dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2631] synonym: "fourth sacral dorsal root ganglion" EXACT [FMA:6345, UBERON:cjm] xref: EMAPA:25173 xref: FMA:6345 xref: NIF_GrossAnatomy:birnlex_2631 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0007714 name: cervical subsegment of spinal cord namespace: uberon synonym: "segment part of cervical spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1688] xref: FMA:256653 xref: NIF_GrossAnatomy:birnlex_1688 xref: SCTID:278749009 is_a: UBERON:0005844 ! spinal cord segment relationship: part_of UBERON:0002726 ! cervical spinal cord [Term] id: UBERON:0007715 name: thoracic subsegment of spinal cord namespace: uberon synonym: "segment part of thoracic spinal cord" EXACT [NIF_GrossAnatomy:birnlex_892] xref: FMA:256655 xref: NIF_GrossAnatomy:birnlex_892 is_a: UBERON:0005844 ! spinal cord segment relationship: part_of UBERON:0003038 ! thoracic spinal cord [Term] id: UBERON:0007716 name: lumbar subsegment of spinal cord namespace: uberon synonym: "segment part of lumbar spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1652] xref: FMA:256657 xref: NIF_GrossAnatomy:birnlex_1652 xref: SCTID:278751008 is_a: UBERON:0005844 ! spinal cord segment relationship: part_of UBERON:0002792 ! lumbar spinal cord [Term] id: UBERON:0007717 name: sacral subsegment of spinal cord namespace: uberon synonym: "segment part of sacral spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1512] xref: FMA:256659 xref: NIF_GrossAnatomy:birnlex_1512 xref: SCTID:278752001 is_a: UBERON:0005844 ! spinal cord segment relationship: part_of UBERON:0005843 ! sacral spinal cord [Term] id: UBERON:0007718 name: principal artery to limb namespace: uberon is_a: UBERON:0001637 ! artery [Term] id: UBERON:0007719 name: os penis/os clitoris namespace: uberon synonym: "baculum" NARROW [] is_a: UBERON:0001474 ! bone is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0007721 name: interphalangeal joint of toe namespace: uberon def: "The interphalangeal articulations of the foot (articulations of the phalanges) are ginglymoid joints, and each has a plantar and two collateral ligaments. The arrangement of these ligaments is similar to that in the metatarsophalangeal articulations: the Extensor tendons supply the places of dorsal ligaments." [Wikipedia:Interphalangeal_articulations_of_the_foot] synonym: "foot interphalangeal joint" EXACT [MESH:A.02.835.583.378.900] synonym: "interphalangeal joint of foot" EXACT [FMA:35225] synonym: "toe joint" RELATED [MESH:A.02.835.583.378.900] xref: FMA:35225 xref: MESH:A.02.835.583.378.900 xref: SCTID:182225005 xref: ncithesaurus:Interphalangeal_Joint_of_the_Foot is_a: UBERON:0001487 ! joint of foot is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0007722 name: interphalangeal joint of finger namespace: uberon def: "The interphalangeal articulations of hand are hinge-joints of the phalanges of the hand. There are two sets (except in the thumb): \"proximal interphalangeal joints\" (PIP), those between the first (also called proximal) and second (intermediate) phalanges \"distal interphalangeal joints\" (DIP), those between the second and third (distal) phalanges A similar group of articulations also function in the toes." [Wikipedia:Interphalangeal_articulations_of_the_hand] synonym: "IP joint" EXACT [FMA:35285] synonym: "interphalangeal joint of hand" EXACT [FMA:35285] xref: FMA:35285 xref: SCTID:303280009 xref: ncithesaurus:Interphalangeal_Joint_of_the_Hand is_a: UBERON:0001489 ! joint of hand is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0007723 name: interphalangeal joint of thumb namespace: uberon synonym: "interphalangeal joint of first digit of hand" EXACT [FMA:35312] xref: EMAPA:25058 xref: FMA:35312 xref: SCTID:182192008 is_a: UBERON:0007722 ! interphalangeal joint of finger relationship: part_of UBERON:0001463 ! hand digit 1 [Term] id: UBERON:0007724 name: interphalangeal joint of big toe namespace: uberon synonym: "interphalangeal joint of first digit of foot" EXACT [FMA:35353] synonym: "interphalangeal joint of great toe" EXACT [FMA:35353] xref: EMAPA:26430 xref: FMA:35353 xref: SCTID:363671008 is_a: UBERON:0007721 ! interphalangeal joint of toe relationship: part_of UBERON:0003631 ! foot digit 1 [Term] id: UBERON:0007725 name: interphalangeal joint of second toe namespace: uberon synonym: "interphalangeal joint of second digit of foot" EXACT [FMA:35356] xref: EMAPA:26448 xref: FMA:35356 is_a: UBERON:0007721 ! interphalangeal joint of toe relationship: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0007726 name: interphalangeal joint of third toe namespace: uberon synonym: "interphalangeal joint of third digit of foot" EXACT [FMA:35359] xref: EMAPA:26454 xref: FMA:35359 is_a: UBERON:0007721 ! interphalangeal joint of toe relationship: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0007727 name: interphalangeal joint of fourth toe namespace: uberon synonym: "interphalangeal joint of fourth digit of foot" EXACT [FMA:35362] xref: EMAPA:26466 xref: FMA:35362 is_a: UBERON:0007721 ! interphalangeal joint of toe relationship: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0007728 name: interphalangeal joint of little toe namespace: uberon synonym: "interphalangeal joint of fifth digit of foot" EXACT [FMA:35365] synonym: "interphalangeal joint of fifth toe" EXACT [FMA:35365] xref: EMAPA:26478 xref: FMA:35365 is_a: UBERON:0007721 ! interphalangeal joint of toe relationship: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0007729 name: interphalangeal joint of index finger namespace: uberon synonym: "interphalangeal joint of second digit of hand" EXACT [FMA:35397] synonym: "interphalangeal joint of second finger" EXACT [FMA:35397] xref: EMAPA:25061 xref: FMA:35397 is_a: UBERON:0007722 ! interphalangeal joint of finger relationship: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0007730 name: interphalangeal joint of middle finger namespace: uberon synonym: "interphalangeal joint of third digit of hand" EXACT [FMA:35400] synonym: "interphalangeal joint of third finger" EXACT [FMA:35400] xref: EMAPA:25064 xref: FMA:35400 is_a: UBERON:0007722 ! interphalangeal joint of finger relationship: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0007731 name: interphalangeal joint of ring finger namespace: uberon synonym: "interphalangeal joint of fourth digit of hand" EXACT [FMA:35403] synonym: "interphalangeal joint of fourth finger" EXACT [FMA:35403] xref: EMAPA:25067 xref: FMA:35403 is_a: UBERON:0007722 ! interphalangeal joint of finger relationship: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0007732 name: interphalangeal joint of little finger namespace: uberon synonym: "interphalangeal joint of fifth digit of hand" EXACT [FMA:35407] synonym: "interphalangeal joint of fifth finger" EXACT [FMA:35407] xref: EMAPA:25070 xref: FMA:35407 is_a: UBERON:0007722 ! interphalangeal joint of finger relationship: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0007735 name: metacarpophalangeal joint of thumb namespace: uberon synonym: "metacarpophalangeal joint of first digit of hand" EXACT [FMA:35249] xref: EMAPA:25057 xref: FMA:35249 xref: SCTID:361844001 is_a: UBERON:0003695 ! metacarpophalangeal joint [Term] id: UBERON:0007738 name: metacarpophalangeal joint of index finger namespace: uberon synonym: "metacarpophalangeal joint of second digit of hand" EXACT [FMA:35252] synonym: "metacarpophalangeal joint of second finger" EXACT [FMA:35252] xref: EMAPA:25060 xref: FMA:35252 xref: SCTID:361845000 is_a: UBERON:0003695 ! metacarpophalangeal joint [Term] id: UBERON:0007741 name: metacarpophalangeal joint of middle finger namespace: uberon synonym: "metacarpophalangeal joint of third digit of hand" EXACT [FMA:35255] synonym: "metacarpophalangeal joint of third finger" EXACT [FMA:35255] xref: EMAPA:25063 xref: FMA:35255 xref: SCTID:361846004 is_a: UBERON:0003695 ! metacarpophalangeal joint [Term] id: UBERON:0007744 name: metacarpophalangeal joint of ring finger namespace: uberon synonym: "metacarpophalangeal joint of fourth digit of hand" EXACT [FMA:35258] synonym: "metacarpophalangeal joint of fourth finger" EXACT [FMA:35258] xref: EMAPA:25066 xref: FMA:35258 xref: SCTID:361847008 is_a: UBERON:0003695 ! metacarpophalangeal joint [Term] id: UBERON:0007747 name: metacarpophalangeal joint of little finger namespace: uberon synonym: "metacarpophalangeal joint of fifth digit of hand" EXACT [FMA:35261] synonym: "metacarpophalangeal joint of fifth finger" EXACT [FMA:35261] xref: EMAPA:25069 xref: FMA:35261 xref: SCTID:361848003 is_a: UBERON:0003695 ! metacarpophalangeal joint [Term] id: UBERON:0007750 name: metatarsophalangeal joint of big toe namespace: uberon comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of first digit of foot" EXACT [FMA:35228] synonym: "metatarsophalangeal joint of great toe" EXACT [FMA:35228] xref: EMAPA:26436 xref: FMA:35228 is_a: UBERON:0003696 ! metatarsophalangeal joint [Term] id: UBERON:0007753 name: metatarsophalangeal joint of second toe namespace: uberon comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of second digit of foot" EXACT [FMA:35231] xref: EMAPA:26442 xref: FMA:35231 xref: SCTID:361869001 is_a: UBERON:0003696 ! metatarsophalangeal joint [Term] id: UBERON:0007756 name: metatarsophalangeal joint of third toe namespace: uberon comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of third digit of foot" EXACT [FMA:35234] xref: EMAPA:26460 xref: FMA:35234 xref: SCTID:361870000 is_a: UBERON:0003696 ! metatarsophalangeal joint [Term] id: UBERON:0007759 name: metatarsophalangeal joint of fourth toe namespace: uberon comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of fourth digit of foot" EXACT [FMA:35237] xref: EMAPA:26472 xref: FMA:35237 xref: SCTID:361871001 is_a: UBERON:0003696 ! metatarsophalangeal joint [Term] id: UBERON:0007762 name: metatarsophalangeal joint of little toe namespace: uberon comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of fifth digit of foot" EXACT [FMA:35240] synonym: "metatarsophalangeal joint of fifth toe" EXACT [FMA:35240] xref: EMAPA:26484 xref: FMA:35240 xref: SCTID:361872008 is_a: UBERON:0003696 ! metatarsophalangeal joint relationship: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0007763 name: cerebellum culmen namespace: uberon comment: ABA splits culmen into IV and V and IV-V synonym: "culmen" BROAD [MA:0001001, NIF_GrossAnatomy:birnlex_926] synonym: "neuraxis culmen" EXACT [FMA:83886] xref: ABA:CUL xref: FMA:83886 xref: NIF_GrossAnatomy:birnlex_926 xref: SCTID:279384001 is_a: UBERON:0004070 ! cerebellum vermis lobule relationship: part_of UBERON:0003941 ! cerebellum anterior vermis [Term] id: UBERON:0007764 name: paramedian reticular nucleus namespace: uberon def: "The paramedian reticular nucleus (in Terminologia Anatomica, or paramedian medullary reticular group in NeuroNames) sends its connections to the spinal cord in a mostly ipsilateral manner, although there is some decussation. It projects to the vermis in the anterior lobe, the pyramis and the uvula. The paramedian nucleus also projects to the contralateral PRN, the gigantocellular nucleus, and the nucleus ambiguous. The paramedian reticular formation is adjacent to the abducens (VI)nucleus in the pons and adjacent to the oculomotor nucleus(III) in the midbrain. The paramedian nucleus receives afferents mostly from the fastigial nucleus in the cerebellum and the cerebral cortex; however, the projections from the spinal cord are very sparse. The descending afferent connections come mostly from the frontal and parietal lobes; however the pontine reticular formation also sends projections to the paramedian reticular nucleus. There are also very sparse innervations from the superior colliculus. Lesions in the paramedian reticular nucleus have been shown to cause a stereotyped increase in the random patterns of motion in rats. The paramedian nuclei on either side of the brain stem have been shown to mediate the horizontal eye movements on their ipsilateral sides. It seems possible that that the random motion patterns of the above rats were caused by an inability to mediate their horizontal eye movements." [Wikipedia:Paramedian_reticular_nucleus] comment: todo - check synonym: "nucleus reticularis paramedianus" RELATED [Wikipedia:Paramedian_reticular_nucleus] synonym: "ventral paramedian reticular nucleus" EXACT [FMA:72583] xref: ABA:PMR xref: FMA:72583 is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:0007767 name: dorsal premammillary nucleus namespace: uberon xref: ABA:PMd xref: FMA:77006 is_a: UBERON:0002712 ! premammillary nucleus property_value: "spatially_disjoint_from" UBERON:0002035 property_value: "spatially_disjoint_from" UBERON:0002206 property_value: "spatially_disjoint_from" UBERON:0002634 property_value: "spatially_disjoint_from" UBERON:0002706 property_value: "spatially_disjoint_from" UBERON:0007768 [Term] id: UBERON:0007768 name: ventral premammillary nucleus namespace: uberon xref: ABA:PMv xref: FMA:77007 is_a: UBERON:0002712 ! premammillary nucleus property_value: "spatially_disjoint_from" UBERON:0002035 property_value: "spatially_disjoint_from" UBERON:0002206 property_value: "spatially_disjoint_from" UBERON:0002634 property_value: "spatially_disjoint_from" UBERON:0002706 property_value: "spatially_disjoint_from" UBERON:0007767 [Term] id: UBERON:0007769 name: medial preoptic region namespace: uberon synonym: "medial preoptic area" EXACT [ABA:MPO] xref: ABA:MPO xref: MA:0000839 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003048 ! regional part of hypothalamus relationship: part_of UBERON:0001928 ! preoptic area relationship: part_of UBERON:0002272 ! medial zone of hypothalamus [Term] id: UBERON:0007770 name: osphradium namespace: uberon def: "The osphradium is the olfactory organ in certain molluscs, linked with the respiration organ. The main function of this is to test incoming water for silt and other possible food particles. It is used by all members of the Genus Conus." [BTO:0004995, Wikipedia:Osphradium] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0004995 is_a: UBERON:0002268 ! olfactory organ [Term] id: UBERON:0007771 name: epidermis gland namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "gland of epidermis" EXACT [FMA:59153] xref: FMA:59153 is_a: UBERON:0002419 ! skin gland is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0007772 name: scrotal sweat namespace: uberon synonym: "sweat of scrotum" EXACT [FMA:73266] xref: FMA:73266 is_a: UBERON:0001089 ! sweat [Term] id: UBERON:0007773 name: scrotal sweat gland namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: EMAPA:29743 is_a: UBERON:0001820 ! sweat gland is_a: UBERON:0005399 ! male reproductive gland [Term] id: UBERON:0007774 name: secondary dentition namespace: uberon def: "The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.237] synonym: "adult dentition" RELATED [GAID:1251] synonym: "dentes permanentes" EXACT [FMA:75152, FMA:TA] synonym: "permanent dentition" EXACT [GAID:1251] synonym: "permanent teeth" EXACT [FMA:75152] synonym: "secondary dentition" RELATED [GAID:1251] synonym: "set of permanent teeth" EXACT [FMA:75152] synonym: "set of secondary teeth" EXACT [FMA:75152] xref: FMA:75152 xref: GAID:1251 xref: MESH:A.14.254.237 is_a: UBERON:0003672 ! dentition [Term] id: UBERON:0007775 name: secondary tooth namespace: uberon def: "Permanent teeth are the second set of teeth formed in humans[WP]." [Wikipedia:Permanent_teeth] comment: GAT in FMA synonym: "permanent tooth" EXACT [FMA:55654] xref: FMA:55654 xref: SCTID:245563006 xref: ncithesaurus:Permanent_Tooth is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0007776 name: unerupted tooth namespace: uberon def: "A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group." [MESH:A.14.254.860.715] synonym: "unerupted teeth" RELATED [GAID:1268] xref: GAID:1268 xref: MESH:A.14.254.860.715 is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0007777 name: umbilical vein endothelium namespace: uberon xref: BTO:0001416 is_a: UBERON:0001919 ! endothelium of vein is_a: UBERON:0001986 ! endothelium relationship: part_of UBERON:0002066 ! umbilical vein [Term] id: UBERON:0007778 name: umbilical artery endothelium namespace: uberon xref: BTO:0000857 is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0001986 ! endothelium relationship: part_of UBERON:0001310 ! umbilical artery [Term] id: UBERON:0007779 name: transudate namespace: uberon def: "Body substance in liquid state, which is derived from plasma by passage through the (intact) wall of capillaries without further processing by secretory cells or glands." [FMA:12276] xref: FMA:12276 xref: GAID:1195 xref: MESH:A.12.383 xref: ncithesaurus:Transudate is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0006314 ! bodily fluid [Term] id: UBERON:0007780 name: exudate namespace: uberon def: "Exudates are fluids, cells, or other cellular substances that are slowly discharged from blood vessels usually from inflamed tissues." [MESH:A.12.383] synonym: "transudates and exudate" RELATED [GAID:1195] xref: MESH:A.12.383 xref: ncithesaurus:Exudate is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0007793 name: labyrinthine fluid namespace: uberon def: "Fluids found within the osseous labyrinth (PERILYMPH) and the membranous labyrinth (ENDOLYMPH) of the inner ear. (From Gray's Anatomy, 30th American ed, p1328, 1332)" [MESH:A.12.207.571] synonym: "labyrinthine fluid" RELATED [MESH:A.12.207.571] xref: GAID:1183 xref: MESH:A.12.207.571 is_a: UBERON:0006314 ! bodily fluid [Term] id: UBERON:0007794 name: serous fluid namespace: uberon def: "Transudate contained in a serous sac." [FMA:20932] xref: FMA:20932 is_a: UBERON:0007779 ! transudate [Term] id: UBERON:0007795 name: ascitic fluid namespace: uberon def: "The serous fluid which accumulates in the peritoneal cavity in ascites." [MESH:A.12.207.119] comment: todo - move to pathological anatomical entity ontology synonym: "ascites" RELATED [BTO:0000091] synonym: "ascites fluid" RELATED [BTO:0000091] xref: BTO:0000091 xref: GAID:1175 xref: MESH:A.12.207.119 is_a: UBERON:0001268 ! peritoneal fluid relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0007798 name: vascular system namespace: uberon comment: in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system xref: BTO:0001085 xref: EHDAA2:0004520 xref: MA:0002718 xref: ncithesaurus:Vascular_System is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0007799 name: mixed dentition namespace: uberon def: "The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.229] synonym: "transitional dentition" EXACT [GAID:1250] xref: GAID:1250 xref: MESH:A.14.254.229 xref: SCTID:245545006 is_a: UBERON:0003672 ! dentition [Term] id: UBERON:0007800 name: proatlas namespace: uberon def: "a small, paired bony element (more rarely, having fused parts) located between the skull and the atlas in tuataras, crocodiles, chameleons, and many fossil reptiles; it is uncommon in turtles and mammals (hedgehog). The proatlas apparently develops from the ossified neural part of the sclerotome. Externally it resembles the neural arch of the vertebra, since it articulates anteriorly with the lateral occipital bone and posteriorly with the anterior articular process of the atlas." [http://encyclopedia2.thefreedictionary.com/Proatlas] is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0007801 name: pygostyle namespace: uberon def: "Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]." [Wikipedia:Pygostyle] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: SCTID:416894001 is_a: UBERON:0001474 ! bone is_a: UBERON:0004247 ! back bone relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0007802 name: uropygial gland namespace: uberon def: "A large gland at the base of a bird's tail that secretes an oil used in preening." [BTO:0001420, Wikipedia:Uropygial_gland] comment: The gland is found near the base of the tail and is shaped into two symmetric parts. The oil of each part of the gland is secreted through the surface of the skin through a grease nipple-like nub. A bird will typically transfer this oil to its feathers by rubbing its head against the oil and then around the rest of the body. Tailward areas are usually preened utilizing the beak. Not all birds have a uropygial gland. Exceptions include the emu, ostrich, and bustards. These typically find other means to stay clean and dry, such as taking a dust bath subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "oil gland" RELATED [BTO:0001420] xref: BTO:0001420 xref: SCTID:48626006 is_a: UBERON:0002365 ! exocrine gland relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:0007803 name: preen oil namespace: uberon is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0007804 name: sclerotic ring namespace: uberon def: "Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]." [Wikipedia:Sclerotic_ring] is_a: UBERON:0001474 ! bone is_a: UBERON:0004766 ! cranial bone relationship: part_of UBERON:0001697 ! orbit [Term] id: UBERON:0007805 name: synsacrum namespace: uberon def: "The synsacrum is a skeletal structure, mainly described in birds and dinosaurs, in which the sacrum is extended by incorporation of additional fused or partially-fused caudal or lumbar vertebrae. The ilium of the pelvis is attached to the synsacrum and, in some species, may also be fused to it. Together with the pelvis this forms a rigid structure which carries the weight of the hind end of the animal. In living and some prehistoric birds, posterior to the synsacrum there are usually only a few free caudal vertebrae, on the end of which lies the pygostyle[WP]. Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end[AAO]." [AAO:Pugener_2002, Wikipedia:Synsacrum] xref: AAO:0000740 xref: SCTID:67943001 is_a: UBERON:0001474 ! bone is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0005179 ! pelvis organ relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0007806 name: connecting stalk namespace: uberon def: "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] comment: todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels xref: BTO:0004705 xref: ncithesaurus:Connecting_Stalk is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0007807 name: connecting stalk blood vessels namespace: uberon xref: EHDAA2:0000313 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0007806 ! connecting stalk [Term] id: UBERON:0007808 name: abdominal adipose tissue namespace: uberon def: "Adipose tissue located inside the peritoneal cavity, packed in between internal organs and torso. An excess of visceral fat is known as central obesity, or belly fat, the pot belly or beer belly effect, in which the abdomen protrudes excessively." [BTO:0004041] synonym: "abdominal fat" RELATED [BTO:0004041] synonym: "intra-abdominal fat" RELATED [BTO:0004041] synonym: "organ fat" RELATED [BTO:0004041] synonym: "visceral adipose tissue" RELATED [BTO:0004041] synonym: "visceral fat" RELATED [BTO:0004041] xref: BTO:0004041 is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0007809 name: fascia of Camper namespace: uberon def: "The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia. ." [Wikipedia:Fascia_of_Camper] synonym: "Camper's fascia" EXACT [Wikipedia:Fascia_of_Camper] synonym: "adipose layer of superficial fascia of abdomen" EXACT [FMA:19922] synonym: "camper's fascia" EXACT [FMA:19922] synonym: "fascia investiens intermedia abdominis" EXACT [FMA:19922, FMA:TA] synonym: "fatty layer of subcutaneous tissue of abdomen" EXACT [FMA:19922] synonym: "fatty layer of superficial fascia of abdomen" EXACT [FMA:19922] synonym: "intermediate investing fascia of abdomen" EXACT [FMA:19922] synonym: "panniculus adiposus telae subcutaneae abdominis" EXACT [FMA:19922, FMA:TA] synonym: "superficial layer of superficial fascia of abdomen" EXACT [FMA:19922] xref: FMA:19922 is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0003567 ! abdomen connective tissue relationship: part_of UBERON:0006635 ! anterior abdominal wall [Term] id: UBERON:0007811 name: craniocervical region namespace: uberon def: "The anteriormost subdivision of the body that includes the head and the neck (if present). In vertebrates this is the subdivision that includes the cervical vertebrae." [UBERON:cjm] synonym: "head and neck" EXACT [FMA:280881] synonym: "head or neck" RELATED [] xref: EV:0100009 xref: FMA:280881 xref: MA:0000006 xref: SCTID:361355005 xref: galen:HeadAndNeck xref: ncithesaurus:Head_and_Neck is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0007812 name: post-anal tail namespace: uberon def: "a tail that extends from the posterior tip of the organism to the anus, contains muscle and skeleton." [UBERON:cjm] comment: Taxon notes: present at some time in chordate life history (eg in Urochordates, present only in free-swimming larvae). Function: propellor locomotion (in some species) subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "muscular postanal tail" EXACT [] synonym: "postanal tail" EXACT [] xref: AAO:0010338 xref: EHDAA2:0003109 xref: MA:0000008 xref: XAO:0003026 xref: ZFA:0001117 xref: ncithesaurus:Tail is_a: UBERON:0002415 ! tail relationship: part_of UBERON:0006071 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! caudal region [Term] id: UBERON:0007818 name: major alar cartilage namespace: uberon def: "The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose." [Wikipedia:Greater_alar_cartilage] synonym: "cartilago alaris major" EXACT [FMA:59504] synonym: "greater alar cartilage" EXACT [FMA:59504] xref: FMA:59504 xref: SCTID:361928006 is_a: UBERON:0001823 ! nasal cartilage [Term] id: UBERON:0007819 name: minor alar cartilage namespace: uberon def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [Wikipedia:Lesser_alar_cartilages] synonym: "lesser alar cartilage" EXACT [FMA:59507] xref: FMA:59507 is_a: UBERON:0001823 ! nasal cartilage [Term] id: UBERON:0007820 name: accessory nasal cartilage namespace: uberon xref: FMA:59510 is_a: UBERON:0001823 ! nasal cartilage [Term] id: UBERON:0007821 name: lateral nasal cartilage namespace: uberon def: "The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]." [Wikipedia:Lateral_nasal_cartilage] xref: FMA:59511 xref: SCTID:278944009 is_a: UBERON:0001823 ! nasal cartilage [Term] id: UBERON:0007822 name: vomeronasal cartilage namespace: uberon def: "The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson. Ludwig Levin Jacobson (1783-1843), a Danish anatomist, named this structure in 1809." [Wikipedia:Vomeronasal_cartilage] synonym: "Huschke's cartilage" EXACT [FMA:59514] synonym: "Jacobson's cartilage" EXACT [FMA:59514] xref: FMA:59514 xref: SCTID:368123006 is_a: UBERON:0001823 ! nasal cartilage [Term] id: UBERON:0007823 name: limb/fin girdle namespace: uberon def: "Subdivision of limb or fin, which is the proximal segment, and links the limb or fin to the body[FMA,modified]." [FMA:24874] is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0007824 name: limb girdle namespace: uberon def: "Subdivision of limb, which is the proximal segment of a limb and links the free limb to the trunk; it is demarcated by the plane of the surfaces of the glenoid and acetabular fossae from the free limb; together with the free limb, it constitutes the limb. Examples: There are only four instances, right and left pectoral girdles and right and left pelvic girdles." [FMA:24874] comment: TODO - distinguish free limb from free limb + girdle xref: FMA:24874 is_a: UBERON:0002529 ! limb segment is_a: UBERON:0007823 ! limb/fin girdle relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0007825 name: reticular membrane of spiral organ namespace: uberon synonym: "reticular lamina" BROAD [MA:0001194] synonym: "reticular lamina of spiral organ" EXACT [Obol:automatic] synonym: "reticular lamina of spiral organ of cochlea" EXACT [Obol:automatic] xref: FMA:77849 xref: MA:0001194 is_a: UBERON:0001967 ! reticular lamina is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002227 ! spiral organ of cochlea [Term] id: UBERON:0007826 name: peritoneal mesentery namespace: uberon def: "A double layer composed of peritoneum that attaches the visceral organs to the body wall." [ZFIN:curator] xref: FMA:20570 xref: TAO:0005129 xref: XAO:0000138 xref: ZFA:0005129 is_a: UBERON:0002095 ! mesentery relationship: part_of UBERON:0001178 ! visceral peritoneum relationship: part_of UBERON:0002358 ! peritoneum relationship: part_of UBERON:0001007 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! digestive system [Term] id: UBERON:0007827 name: external nose namespace: uberon def: "Subdivision of face, the exterior of the nose, which consists of a root, dorsum, tip, columella, and right and left alae." [FMA:59515] synonym: "nose" RELATED [] xref: FMA:59515 xref: SCTID:265785009 xref: ncithesaurus:External_Nose is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0007828 name: girdle bone/zone namespace: uberon synonym: "girdle bone" EXACT [MA:0000291] xref: MA:0000291 is_a: UBERON:0004375 ! bone of appendage relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0007829 name: pectoral girdle bone namespace: uberon subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO xref: MA:0000292 is_a: UBERON:0007828 ! girdle bone/zone is_a: UBERON:0003459 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! chest bone relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: UBERON:0007830 name: pelvic girdle bone/zone namespace: uberon comment: typically the ilium, ischium and pubis. These can alternately be considered individual bones, or zones of a single fused bone subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pelvic girdle bone" EXACT [MA:0000293] xref: MA:0000293 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007828 ! girdle bone/zone is_a: UBERON:0003828 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! abdominal segment bone [Term] id: UBERON:0007831 name: skeleton of pectoral girdle namespace: uberon comment: todo - check EMAPA subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pectoral girdle" BROAD [ZFA:0000407] synonym: "pectoral girdle skeleton" EXACT [FMA:24141] xref: AAO:0000422 xref: EFO:0000946 xref: EHDAA2:0001420 xref: EMAPA:18025 xref: FMA:24141 xref: MAT:0000181 xref: MIAA:0000181 xref: TAO:0000407 xref: VAO:0000156 xref: VHOG:0001156 xref: XAO:0003063 xref: ZFA:0000407 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Pectoral_girdle_front_diagram.svg/200px-Pectoral_girdle_front_diagram.svg.png xref: ncithesaurus:Shoulder_Girdle is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0007272 ! fore limb/fin skeleton [Term] id: UBERON:0007832 name: skeleton of pelvic girdle namespace: uberon def: "Skeletal structure which is part of the hindlimb/fin ." [Wikipedia:Pelvic_girdle] subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "pelvic girdle" BROAD [ZFA:0000565] synonym: "pelvic girdle skeleton" EXACT [Obol:automatic] xref: AAO:0000426 xref: AAO:0000768 xref: EFO:0000947 xref: EHDAA2:0001426 xref: EHDAA:7149 xref: EHDAA:8324 xref: EMAPA:18028 xref: FMA:87592 xref: MAT:0000182 xref: MIAA:0000182 xref: TAO:0000565 xref: VAO:0000155 xref: VHOG:0000305 xref: XAO:0003064 xref: ZFA:0000565 xref: galen:PelvicGirdle xref: http://people.eku.edu/ritchisong/pectoralgirdles.gif xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0007273 ! hind limb/fin skeleton [Term] id: UBERON:0007833 name: osseus semicircular canal namespace: uberon comment: consider adding FMA:60186 synonym: "osseous semicircular canal" EXACT [Obol:automatic] xref: MA:0000250 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0006585 ! vestibular organ relationship: part_of UBERON:0001839 ! bony labyrinth relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0007834 name: lumbar spinal cord ventral commissure namespace: uberon synonym: "lumbar spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1326] xref: NIF_GrossAnatomy:birnlex_1326 is_a: UBERON:0004170 ! spinal cord ventral commissure [Term] id: UBERON:0007835 name: sacral spinal cord ventral commissure namespace: uberon synonym: "sacral spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1528] xref: NIF_GrossAnatomy:birnlex_1528 is_a: UBERON:0004170 ! spinal cord ventral commissure [Term] id: UBERON:0007836 name: cervical spinal cord ventral commissure namespace: uberon synonym: "cervical spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1552] xref: NIF_GrossAnatomy:birnlex_1552 is_a: UBERON:0004170 ! spinal cord ventral commissure [Term] id: UBERON:0007837 name: thoracic spinal cord ventral commissure namespace: uberon synonym: "thoracic spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1556] xref: NIF_GrossAnatomy:birnlex_1556 is_a: UBERON:0004170 ! spinal cord ventral commissure [Term] id: UBERON:0007838 name: spinal cord white commissure namespace: uberon synonym: "white commissure of spinal cord" EXACT [FMA:77033] xref: FMA:77033 xref: SCTID:423957000 is_a: UBERON:0001020 ! commissure is_a: UBERON:0008882 ! spinal cord commissure relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0007840 name: spinal cord dorsal white commissure namespace: uberon synonym: "commissura alba posterior medullae spinalis" EXACT [FMA:77034, FMA:TA] synonym: "dorsal white commissure of spinal cord" EXACT [FMA:77034] synonym: "posterior white commissure of spinal cord" EXACT [FMA:77034] xref: FMA:77034 xref: SCTID:424400007 is_a: UBERON:0007838 ! spinal cord white commissure [Term] id: UBERON:0007841 name: furcula namespace: uberon def: "a forked bone found in birds, formed by the fusion of the two clavicles. In birds, its function is the strengthening of the thoracic skeleton to withstand the rigors of flight." [Wikipedia:Furcula] comment: The following theropods have been found to have furculae: dromaeosaurids (including a new North American species of Velociraptor), Oviraptorids, Tyrannosaurids, Troodontids, Coelophysids and Allosauroids. synonym: "fused clavicle" RELATED [] synonym: "wishbone" RELATED [Wikipedia:Furcula] is_a: UBERON:0001474 ! bone is_a: UBERON:0008962 ! forelimb bone relationship: part_of UBERON:0001440 ! forelimb skeleton property_value: "has_fused_element" UBERON:0008255 property_value: "has_fused_element" UBERON:0008256 [Term] id: UBERON:0007842 name: membrane bone namespace: uberon xref: EHDAA2:0003085 xref: VAO:0000023 xref: XAO:0004014 xref: ZFA:0001636 is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0002514 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! intramembranous bone [Term] id: UBERON:0007843 name: uncinate process of ribs namespace: uberon def: "Extensions of bone that in birds project caudally from the vertical segment of each rib[WP]. Posteriorly directed process (occasionally directed anteriorly) usually associated with the rib (sometimes with the transverse process) of the third vertebra; they provide the origin of the mm serratus superior, medius, and inferior[AAO]. " [AAO:Pugener_2002, Wikipedia:Uncinate_processes_of_ribs] comment: WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx synonym: "uncinate process" BROAD [AAO:0000741] xref: AAO:0000741 xref: SCTID:306373001 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005174 ! back organ is_a: UBERON:0005175 ! chest organ is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0007844 name: cartilaginous element namespace: uberon def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VAO:curator] comment: todo - add subtypes subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "cartilage" RELATED [VAO:0000000] synonym: "cartilage organ" EXACT [FMA:55107] synonym: "chondrogenic element" EXACT [VAO:0000000] xref: FMA:55107 xref: VAO:0000000 xref: XAO:0004013 is_a: UBERON:0004765 ! skeletal element [Term] id: UBERON:0007845 name: regular connective tissue namespace: uberon def: "Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular collagenous tissue." [FMA:20103] xref: FMA:20103 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0007846 name: dense regular collagenous tissue namespace: uberon def: "Regular connective tissue, the intercellular matrix of which consists predominantly of collagen fiber bundles arranged in parallel arrays[FMA]. Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts)[VAP]" [FMA:64781, VAO:0000050] synonym: "dense fibrous connective tissue" EXACT [FMA:64781] synonym: "dense regular collagenous connective tissue" EXACT [FMA:64781] synonym: "dense regular connective tissue" EXACT [FMA:64781, VAO:0000050] synonym: "typus regularis (textus connectivus collagenosus compactus)" EXACT [FMA:64781] xref: FMA:64781 xref: SCTID:22560007 xref: VAO:0000050 xref: XAO:0004030 xref: ncithesaurus:Regular_Dense_Connective_Tissue is_a: UBERON:0007845 ! regular connective tissue [Term] id: UBERON:0007862 name: perichordal tissue namespace: uberon def: "Fibrous connective tissue that surrounds the notochord; includes a layer of elastin." [VAO:curator] comment: Derived from cells surrounding the notochord (possibly the slerotome). Disparate from (not derived from) notochord. synonym: "notochord" RELATED [VAO:curator] synonym: "perichordal connective tissue" EXACT [ZFA:0001633] synonym: "perichordal sheath" EXACT [VAO:curator] synonym: "perichordal sheath tissue" EXACT [VAO:curator] xref: AAO:0010446 xref: VAO:0000054 xref: XAO:0004050 xref: ZFA:0001633 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002328 ! notochord [Term] id: UBERON:0007914 name: head or neck bone namespace: uberon xref: MA:0000569 is_a: UBERON:0001474 ! bone relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0007958 name: central carpal bone namespace: uberon def: "A small bone occasionally found at the dorsal aspect of the wrist between the scaphoid, capitate, and trapezoid; it is developed as an independent cartilage in early foetal life but usually becomes fused with the scaphoid; it occurs normally in most monkeys." [http://www.medilexicon.com/medicaldictionary.php?t=63518] comment: FMA xref is a 'general anatomical term' synonym: "central bone" BROAD [http://www.medilexicon.com/medicaldictionary.php?t=63518] synonym: "centrale" RELATED [MA:0001344] synonym: "os carpi centrale" RELATED [http://epub.ub.uni-muenchen.de/8251/1/8251.pdf] synonym: "os centrale" RELATED [] synonym: "os centrale carpi" RELATED [] xref: FMA:77232 xref: MA:0001344 xref: SCTID:26987000 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0007959 name: falciform carpal bone namespace: uberon comment: todo - check relationship to radial sesamoid synonym: "os falciform" EXACT [UBERON:cjm] synonym: "os falciforme" EXACT [UBERON:cjm] xref: MA:0001345 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0007960 name: scapholunate namespace: uberon def: "The combined scaphoid and lunate bones." [UBERON:cjm] synonym: "intermedioradial carpal bone" RELATED [MA:0001346] synonym: "scapholunate bone" EXACT [UBERON:cjm] synonym: "scapholunatum" RELATED [UBERON:cjm] xref: MA:0001346 is_a: UBERON:0001480 ! proximal carpal bone property_value: "has_fused_element" UBERON:0001427 property_value: "has_fused_element" UBERON:0001428 [Term] id: UBERON:0007990 name: proximal sesamoid bone of foot namespace: uberon xref: MA:0001376 is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0004248 ! foot digit bone is_a: UBERON:0008000 ! sesamoid bone of foot [Term] id: UBERON:0007991 name: proximal sesamoid bone of hand namespace: uberon xref: MA:0001377 is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0004249 ! hand digit bone is_a: UBERON:0007997 ! sesamoid bone of hand [Term] id: UBERON:0007993 name: ulnar sesamoid bone namespace: uberon xref: MA:0001379 is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0003466 ! lower arm bone [Term] id: UBERON:0007997 name: sesamoid bone of hand namespace: uberon xref: FMA:42353 xref: SCTID:368448000 is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0005897 ! hand bone relationship: part_of UBERON:0001442 ! skeleton of hand [Term] id: UBERON:0008000 name: sesamoid bone of foot namespace: uberon xref: FMA:45096 xref: SCTID:244675002 is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0005899 ! foot bone relationship: part_of UBERON:0001445 ! skeleton of foot [Term] id: UBERON:0008001 name: irregular bone namespace: uberon def: "The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone] xref: FMA:7477 xref: SCTID:421560006 xref: ncithesaurus:Irregular_Bone is_a: UBERON:0001474 ! bone [Term] id: UBERON:0008114 name: joint of girdle namespace: uberon synonym: "girdle join" EXACT [OBOL:automatic] xref: MA:0001505 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0008115 name: surface of cartilage namespace: uberon synonym: "cartilage surface" EXACT [FMA:76668] xref: FMA:76668 is_a: UBERON:0006984 ! anatomical surface [Term] id: UBERON:0008124 name: joint articular surface namespace: uberon comment: note that FMA has multiple \"Articular surface of X\" classes, with no way to group them xref: MA:0001518 is_a: UBERON:0008115 ! surface of cartilage relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0008187 name: hypertrophic cartilage zone namespace: uberon comment: see also VAO:0000098 xref: MA:0002849 is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0004763 ! endochondral bone tissue [Term] id: UBERON:0008188 name: tendon of biceps brachii namespace: uberon synonym: "biceps brachii tendon" EXACT [FMA:38152] xref: EMAPA:25053 xref: FMA:38152 is_a: UBERON:0000043 ! tendon [Term] id: UBERON:0008192 name: tendon of triceps brachii namespace: uberon synonym: "triceps brachii tendon" EXACT [FMA:38380] xref: FMA:38380 is_a: UBERON:0000043 ! tendon [Term] id: UBERON:0008193 name: pneumatized bone namespace: uberon def: "a bone that is hollow or contains many air cells, such as the mastoid process of the temporal bone[TMD]. Skeletal pneumaticity is the presence of air spaces within bones. Skeletal pneumaticity exists only in synapsids and archosaurs. It is generally produced during development by excavation of bone by pneumatic diverticula (air sacs) from an air-filled space such as the lungs or nasal cavity. Pneumatization is highly variable between individuals, and bones not normally pneumatized can become pneumatized in pathological development. Pneumatization occurs in the skulls of mammals, crocodilians and birds among extant groups, as well as extinct archosaurs including the dinosaurs and pterosaurs. Pneumatic spaces include the paranasal sinuses and some of the mastoid cells[WP]." [Wikipedia:Skeletal_pneumaticity, http://www.medilexicon.com/medicaldictionary.php?t=11303] comment: editor note: subclasses of this should be checked for taxonomic consistency synonym: "hollow bone" RELATED [] synonym: "os pneumaticum" EXACT [FMA:7478] synonym: "pneumatic bone" EXACT [FMA:7478] xref: FMA:7478 xref: SCTID:333008005 xref: galen:PneumaticBone is_a: UBERON:0008001 ! irregular bone [Term] id: UBERON:0008194 name: tibiotarsus namespace: uberon def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their foot bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus] is_a: UBERON:0001474 ! bone is_a: UBERON:0003464 ! hindlimb bone relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] id: UBERON:0008195 name: tarsometatarsus namespace: uberon def: "The tarsometatarsus is a bone that is found in the lower leg of certain tetrapods, namely birds. It is formed from the fusion of several bones found in other types of animals, and homologous to the mammalian tarsal (ankle) and metatarsal (foot) bones. Despite this, the tarsometatarsus of birds is often referred to as just the tarsus or metatarsus." [Wikipedia:Tibiotarsus] is_a: UBERON:0001474 ! bone is_a: UBERON:0005899 ! foot bone relationship: part_of UBERON:0001445 ! skeleton of foot [Term] id: UBERON:0008196 name: muscle of pectoral girdle namespace: uberon synonym: "muscle of shoulder girdle" EXACT [FMA:37347] synonym: "pectoral girdle muscle" EXACT [FMA:37347] xref: FMA:37347 is_a: UBERON:0003662 ! forelimb muscle [Term] id: UBERON:0008198 name: nail plate namespace: uberon def: "The nail plate is the hard and translucent portion of the nail, composed of keratin." [Wikipedia:Nail_plate, https://github.com/cmungall/uberon/issues/20, https://sourceforge.net/tracker/?func=detail&aid=3307500&group_id=36855&atid=440764] xref: MA:0002708 xref: SCTID:372177002 xref: ncithesaurus:Nail_Plate is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001705 ! nail [Term] id: UBERON:0008199 name: chin namespace: uberon def: "In the human anatomy, the chin is the lowermost part of the face. It is formed by the lower front of the mandible. People show a wide variety of chin structures. See Cleft chin. The chin developed as a point of muscular attachment facilitating minute movements of the lips associated with speech. In human evolution, the chin is a cladistic apomorphy, partially defining anatomically modern Humans as distinct from archaic forms." [Wikipedia:Chin] synonym: "chin %28anatomy%29" RELATED [Wikipedia:Chin] synonym: "chins" RELATED [Wikipedia:Chin] synonym: "mental part of face" EXACT [FMA:46495] synonym: "mental region" EXACT [FMA:46495] synonym: "mental region of face" EXACT [FMA:46495] synonym: "regio mentalis" EXACT [FMA:46495, FMA:TA] xref: FMA:46495 xref: GAID:67 xref: MESH:A.01.456.505.259 xref: SCTID:362632004 xref: galen:Chin is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0008200 name: forehead namespace: uberon def: "The part of the face above the eyes[MESH]. In human anatomy, the forehead is the fore part of the head. It is, formally, an area of the head bounded by three features, two of the skull and one of the scalp. The top of the forehead is marked by the hairline, the edge of the area where hair on the scalp grows. The bottom of the forehead is marked by the supraorbital ridge, the bone feature of the skull above the eyes. The two sides of the forehead are marked by the temporal ridge, a bone feature that links the supraorbital ridge to the coronal suture line and beyond[WP]." [MESH:A.01.456.505.580, Wikipedia:Forehead] synonym: "fore head" RELATED [Wikipedia:Forehead] xref: FMA:63864 xref: GAID:74 xref: MESH:A.01.456.505.580 xref: SCTID:362614004 xref: galen:Forehead is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0008201 name: scute namespace: uberon def: "A bony external plate or scale, as on the shell of a turtle, the skin of crocodilians, the feet of some birds. Scutes are similar to scales and serve the same function. Unlike the scales of fish and snakes, which are formed from the epidermis, scutes are formed in the lower vascular layer of the skin and the epidermal element is only the top surface. Forming in the living dermis, the scutes produce a horny outer layer, that is superficially similar to that of scales. Scutes will usually not overlap as snake scales (but see the pangolin). The outer keratin layer is shed piecemeal, and not in one continuous layer of skin as seen in snakes or lizards. The dermal base may contain bone and produce dermal armour. Scutes with a bony base are properly called osteoderms. Dermal scutes are also found in the feet of birds and tails of some mammals, and are believed to be the primitive form of dermal armour in reptiles. The term is also used to describe the heavy armour of the armadillo and the extinct glyptodon, and is occasionally used as an alternative to scales in describing snakes or certain fishes, such as sturgeons[WP]." [Wikipedia:Scute] synonym: "scuta" EXACT PLURAL [Wikipedia:Scute] synonym: "scutae" EXACT PLURAL [Wikipedia:Scute] synonym: "scutum" EXACT [Wikipedia:Scute] is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0008202 name: bone of hip region namespace: uberon comment: in MA, this includes the femur. i.e. pelvic girdle bone or femur xref: MA:0000655 is_a: UBERON:0003464 ! hindlimb bone is_a: UBERON:0007828 ! girdle bone/zone relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0008203 name: pelvic cavity namespace: uberon def: "The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded \"house\". It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness." [Wikipedia:Pelvic_cavity] synonym: "space of pelvic compartment" EXACT [FMA:9738] xref: FMA:9738 xref: SCTID:281903009 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002355 ! pelvis relationship: part_of UBERON:0003684 ! abdominal cavity [Term] id: UBERON:0008229 name: craniocervical region musculature namespace: uberon synonym: "head or neck muscle" EXACT [MA:0000571] xref: MA:0000571 is_a: UBERON:0001015 ! musculature relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0008230 name: tibialis namespace: uberon def: "Either of two muscles of the calf of the leg." [Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/] xref: BTO:0000864 xref: MA:0002425 xref: ncithesaurus:Tibialis is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0008231 name: upper back namespace: uberon def: "Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax." [FMA:24217] synonym: "dorsum of thorax" EXACT [FMA:24217] synonym: "posterior part of thorax" EXACT [FMA:24217] synonym: "thoracic back" EXACT [FMA:24217] synonym: "thoracic part of back" EXACT [FMA:24217] xref: FMA:24217 xref: MA:0000028 xref: SCTID:362666008 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0008242 name: lower back muscle namespace: uberon xref: MA:0000502 xref: SCTID:317178000 is_a: UBERON:0002324 ! muscle of back is_a: UBERON:0003833 ! abdominal segment muscle relationship: part_of UBERON:0005462 ! lower back [Term] id: UBERON:0008243 name: upper back muscle namespace: uberon xref: MA:0000508 xref: SCTID:305071003 is_a: UBERON:0002324 ! muscle of back is_a: UBERON:0003830 ! thoracic segment muscle relationship: part_of UBERON:0008231 ! upper back [Term] id: UBERON:0008245 name: pennate muscle namespace: uberon def: "A pennate muscle (also called a penniform muscle) is a muscle with fascicles that attach obliquely (in a slanting position) to its tendon. These types of muscles generally allow better stabilization and force production but less flexibility. Individual muscle fibers are formed into bundles of fasciculi and these bundles of fasciculi are formed into bundles of fascicles which compose the entire muscle itself. In a pennate muscle, the fascicles will form an angle with its central tendon. If all the fascicles are on the same side of the tendon, the pennate muscle is called unipennate. Examples of this include certain muscles in the hand. If there are fascicles on both sides of the central tendon, the pennate muscle is called bipennate. The rectus femoris, a large muscle in the quadriceps, is typical. If the central tendon branches within a pennate muscle, the muscle is called multipennate, as seen in the deltoid muscle in the shoulder." [Wikipedia:Pennate_muscle] comment: note the FMA class does not denote a muscle organ. todo: add child classes xref: FMA:74993 xref: Wikipedia:Pennate_muscle is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0008246 name: pyloric stomach namespace: uberon def: "The mouth of a starfish is located on the underside of the body, and opens through a short esophagus into firstly a cardiac stomach, and then, a second, pyloric stomach. Each arm also contains two pyloric caeca, long hollow tubes branching outwards from the pyloric stomach. Each pyloric caecum is lined by a series of digestive glands, which secrete digestive enzymes and absorb nutrients from the food. A short intestine runs from the upper surface of the pyloric stomach to open at an anus in the center of the upper body" [Wikipedia:Starfish] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0002121 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0008247 name: tube foot namespace: uberon def: "One of the numerous external, fluid-filled muscular tubes of echinoderms, such as the starfish or sea urchin, serving as organs of locomotion, food handling, and respiration[BTO]. Tube feet consist of two parts: ampulla and podia. Ampulla contain both circular muscles and longitudinal muscle, whereas the podia contain the latter only. Thus the podia use suction to attach to the substratum[WP]." [BTO:0001919, Wikipedia:Tube_feet] synonym: "tube feet" RELATED PLURAL [Wikipedia:Tube_feet] xref: BTO:0001919 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0008248 name: pyloric cecum namespace: uberon def: "The pyloric ceca (or digestive glands) and the cardiac stomach produce digestive enzymes in starfishes. Digested material is absorbed through the pyloric ceca for transport to the rest of the body. Each pyloric cecum extends the length of each arm." [BTO:0002120] synonym: "pyloric caecum" EXACT [BTO:0002120] xref: BTO:0002120 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0008250 name: cardiac stomach namespace: uberon def: "In starfishes the cardiac stomach is connected to a pyloric stomach which is located above it. Food can be brought into the stomach through the mouth or, in many species, the cardiac stomach can be extended out through the mouth to digest food outside the body. Suspension-feeding starfish use their tube feet to pass food to the mouth." [BTO:0002122] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0002122 is_a: UBERON:0002075 ! viscus [Term] id: UBERON:0008251 name: water vascular system namespace: uberon def: "The water vascular system is a hydraulic system used by echinoderms, such as sea stars and sea urchins, for locomotion, food and waste transportation, and respiration.[1] The system is composed of canals connecting numerous tube feet. Echinoderms move by alternately contracting muscles that force water into the tube feet, causing them to extend and push against the ground, then relaxing to allow the feet to retract.[WP]." [Wikipedia:Water_vascular_system] xref: BTO:0002125 is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0008252 name: tube foot ampulla namespace: uberon def: "The constant contraction of ampulla (to extend and retract the tube feet) helps to move a starfish. The ampullae are teeth like structures surrounding the radial canal." [BTO:0002124] xref: BTO:0002124 is_a: UBERON:0003913 ! tooth-like structure relationship: part_of UBERON:0008247 ! tube foot relationship: part_of UBERON:0008251 ! water vascular system [Term] id: UBERON:0008253 name: Aristotle's lantern namespace: uberon def: "Within the mouth of a sea urchin is an elaborate five-sided jaw structure called Aristotles lantern that can be partially extruded from the mouth. It is able to grind up calcareous exoskeletons of plants and animals." [BTO:0001923, Wikipedia:Aristotle's_lantern#Digestion] synonym: "Aristotles lantern" EXACT [BTO:0001923] xref: BTO:0001923 xref: http://animaldiversity.ummz.umich.edu/site/resources/biodidac/echino001B.gif/medium.jpg is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0008254 name: styliform cartilage namespace: uberon def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379] is_a: UBERON:0007844 ! cartilaginous element relationship: part_of UBERON:0001440 ! forelimb skeleton property_value: "homologous_to" UBERON:0001429 [Term] id: UBERON:0008255 name: right clavicle namespace: uberon xref: FMA:13322 is_a: UBERON:0001105 ! clavicle [Term] id: UBERON:0008256 name: left clavicle namespace: uberon xref: FMA:13323 is_a: UBERON:0001105 ! clavicle [Term] id: UBERON:0008257 name: radial sesamoid namespace: uberon def: "In the giant panda, a large digitlike preaxial element that articulates with the scapholunatum and the medial border of the first metacarpal." [ISBN-10:0226313379] synonym: "os sesamoideum radiale" EXACT [ISBN-10:0226313379] is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0007997 ! sesamoid bone of hand relationship: part_of UBERON:0004452 ! carpus [Term] id: UBERON:0008258 name: oral surface namespace: uberon synonym: "actinal side" EXACT [] synonym: "actinal surface" EXACT [] is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008259 name: aboral surface namespace: uberon synonym: "abactinal side" EXACT [] synonym: "abactinal surface" EXACT [] is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008260 name: spine appendage namespace: uberon def: "a hard, thorny or needle-like structure which occurs on various animals. Animals such as porcupines and sea urchins grow spines as a self-defense mechanism. Spines are often formed of keratin. Other animals with spines are hedgehogs, spiny mice and at least two ornithischian dinosaurs." [Wikipedia:Spine_(zoology)] synonym: "spine" BROAD [] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0008261 name: pedicellaria namespace: uberon def: "a small wrench or claw-shaped structure commonly found on Echinoderms, particularly in sea stars (class Asteroidea) and sea urchins (class Echinoidea). Pedicellariae are poorly understood but in some taxa, they are thought to keep the body surface clear of algae, encrusting organisms, and other debris in conjunction with the ciliated epidermis present in all echinoderms. Pedicellariae in some taxa, such as the deep-sea Brisingida, and the Antarctic Labidiaster are known to function in food capture. In forcipulate sea stars, each pedicellaria is typically composed three forceps-like valves. Other asteroids can have pedicellariae composed of only two components. In some asteroid sea stars pedicellariae are present around the base of a spine or on the surface of the animal's body. In other sea stars, they are present in pits on the abactinal, marginal, or actinal surface; oftentimes on the adambulacral plate adjacent to the tube foot furrow." [Wikipedia:Pedicellaria] synonym: "pedicellariae" EXACT PLURAL [Wikipedia:Pedicellaria] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0008262 name: ambulacral area namespace: uberon is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008263 name: inter-ambulacral area namespace: uberon is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008264 name: echinopluteus larval stage namespace: uberon def: "Larval stage in echinoderms characterized by a planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands." [http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html] synonym: "pluteus larval stage" EXACT [] is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0008265 name: echinopluteus larva namespace: uberon def: "A planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands." [http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html] synonym: "pluteus larva" EXACT [] is_a: UBERON:0002548 ! larva [Term] id: UBERON:0008266 name: periodontal ligament namespace: uberon def: "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP]." [BTO:0001020, Wikipedia:Periodontal_ligament, https://github.com/cmungall/uberon/issues/21] comment: note FMA treats periodontium and periodontal ligament as the same synonym: "PDL" RELATED [Wikipedia:Periodontal_ligament] synonym: "alveolar periosteum" RELATED [BTO:0001020] synonym: "alveolodental ligament" RELATED [BTO:0001020] synonym: "alveolodental membrane" RELATED [BTO:0001020] synonym: "desmodontium" RELATED [BTO:0001020] synonym: "odontoperiosteum" RELATED [BTO:0001020] synonym: "paradentium" RELATED [BTO:0001020] synonym: "peridental membrane" RELATED [BTO:0001020] synonym: "peridontal ligament" RELATED [] synonym: "peridontal membrane" RELATED [BTO:0001020] synonym: "peridontium" RELATED [BTO:0001020] xref: BTO:0001020 xref: GAID:1259 xref: MA:0002467 xref: SCTID:245775004 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001758 ! periodontium [Term] id: UBERON:0008267 name: left supracardinal vein namespace: uberon def: "The left thoracic supracardinal vein loses its connection with the left posterior cardinal veins and left sinus horn and subsequently drains into the right supracardinal system." [ISBN-10:0443065837] xref: SCTID:361449001 is_a: UBERON:0006300 ! supracardinal vein [Term] id: UBERON:0008268 name: right supracardinal vein namespace: uberon def: "The right supracardinal vein loses its connection with the posterior cardinal vein and makes a new anastomosis with the segments of the superior vena cava derived from the anterior cardinal vein, becoming the azygos vein." [ISBN-10:0443065837] xref: EHDAA2:0004539 xref: SCTID:361450001 is_a: UBERON:0006300 ! supracardinal vein [Term] id: UBERON:0008269 name: nacre namespace: uberon def: "an organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 B5m wide and 0.5 B5m thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]." [Wikipedia:Nacre] synonym: "mother of pearl" EXACT [Wikipedia:Nacre] is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0004755 ! skeletal tissue [Term] id: UBERON:0008270 name: mollusc shell namespace: uberon def: "a calcareous exoskeleton which encloses, supports and protects the soft parts of an animal in the phylum Mollusca, which includes snails, clams, tusk shells, and several other classes. Not all shelled molluscs live in the sea, many live on the land and in freshwater." [Wikipedia:Mollusc_shell] is_a: UBERON:0006612 ! shell [Term] id: UBERON:0008271 name: turtle shell namespace: uberon def: "The upper shell of the turtle is called the carapace. The lower shell that encases the belly is called the plastron. The carapace and plastron are joined together on the turtle's sides by bony structures called bridges. The inner layer of a turtle's shell is made up of about 60 bones that include portions of the backbone and the ribs, meaning the turtle cannot crawl out of its shell. In most turtles, the outer layer of the shell is covered by horny scales called scutes that are part of its outer skin, or epidermis. Scutes are made up of a fibrous protein called keratin that also makes up the scales of other reptiles. These scutes overlap the seams between the shell bones and add strength to the shell. Some turtles do not have horny scutes. For example, the leatherback sea turtle and the soft-shelled turtles have shells covered with leathery skin instead[WP]." [Wikipedia:Turtle_shell#Shell] is_a: UBERON:0006612 ! shell [Term] id: UBERON:0008274 name: mollusc venom namespace: uberon def: "Venoms from mollusks, including the Conus and Octopus species. The venoms contain proteins, enzymes, choline derivatives, slow-reacting substances, and several characterized polypeptide toxins that affect the nervous system. Mollusk venoms include cephalotoxin, venerup in, maculotoxin, surugatoxin, conotoxins, and murexine." [MESH:D.24.185.926.580.590] synonym: "conus venom" RELATED [MESH:D.24.185.926.580.590] synonym: "mollusc venom" RELATED [MESH:D.24.185.926.580.590] synonym: "mollusk venom" RELATED [MESH:D.24.185.926.580.590] synonym: "octopus venom" RELATED [MESH:D.24.185.926.580.590] synonym: "snail venom" RELATED [MESH:D.24.185.926.580.590] xref: MESH:D.24.185.926.580.590 is_a: UBERON:0007113 ! venom [Term] id: UBERON:0008275 name: carapace namespace: uberon def: "The carapace is the dorsal (back), convex part of the shell structure of a turtle, consisting primarily of the animal's broad ribcage. The spine and ribs are fused to bony plates beneath the skin which interlock to form a hard shell. Exterior to the skin the shell is covered by scutes, which are horny plates made of keratin that protect the shell from scrapes and bruises. A keel, a ridge that runs from front to the back of the animal is present in some turtles. Turtles can survive surprisingly severe injuries to the carapace, and even deep cracks or missing portions can fill in with bone and heal. The softshell turtles, pig-nose turtle and leatherback sea turtle lack scutes and the bony carapace is covered only by skin." [Wikipedia:Carapace#Turtles_and_tortoises] comment: note BTO class is more general xref: BTO:0001701 is_a: UBERON:0008271 ! turtle shell [Term] id: UBERON:0008276 name: plastron namespace: uberon def: "The plastron is the nearly flat part of the shell structure of a turtle or tortoise, what one would call the belly, similar in composition to the carapace; with an external layer of horny material divided into plates called scutes and an underlying layer of interlocking bones. In certain families there is a hinge between the pectoral and abdominal scutes allowing the turtle to almost completely enclose itself. In certain species the sex of a testudine can be told by whether the plastron is concave, male or convex, female. This is because of the mating position. The plastral scutes join along a central seam down the middle of the plastron. The relative lengths of the seam segments can be used to help identify a species of turtle or tortoise. There are six laterally symmetric pairs of scutes on the plastron: gular, humeral, pectoral, abdominal, femoral, and anal (going from the head to the tail down the seam); the abdominal and gular scute seams are approximately the same length, and the femoral and pectoral seams are approximately the same length[WP]." [Wikipedia:Plastron] comment: note BTO class is more general xref: BTO:0001701 xref: SCTID:64243001 is_a: UBERON:0008271 ! turtle shell [Term] id: UBERON:0008277 name: cnida namespace: uberon synonym: "cniade" EXACT PLURAL [] is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0008278 name: nematocyst namespace: uberon def: "One of the stinging organelles of coelenterates used in catching prey." [BTO:0000918] xref: BTO:0000918 is_a: UBERON:0008277 ! cnida [Term] id: UBERON:0008279 name: spirocyst namespace: uberon is_a: UBERON:0008277 ! cnida [Term] id: UBERON:0008280 name: cnidarian venom namespace: uberon def: "Venoms from jellyfish, corals, SEA ANEMONES, etc. They contain hemo-, cardio-, dermo- , and neurotoxic substances and probably ENZYMES. They include palytoxin, sarcophine, and anthopleurine." [MESH:D.24.185.926.580.230] synonym: "chironex venom" RELATED [MESH:D.24.185.926.580.230] synonym: "cnidarian venom" RELATED [MESH:D.24.185.926.580.230] synonym: "jellyfish venom" RELATED [MESH:D.24.185.926.580.230] synonym: "portuguese man of war venom" RELATED [MESH:D.24.185.926.580.230] synonym: "portuguese man-of-war venom" RELATED [MESH:D.24.185.926.580.230] synonym: "sea anemone venom" RELATED [MESH:D.24.185.926.580.230] xref: MESH:D.24.185.926.580.230 is_a: UBERON:0007113 ! venom [Term] id: UBERON:0008281 name: tooth bud namespace: uberon def: "A knoblike tooth primordium developing into an enamel organ surrounded by a dental sac and encasing the dental papilla." [BTO:0001838] xref: BTO:0001838 xref: SCTID:53301001 xref: ncithesaurus:Tooth_Bud is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0008283 name: columnella namespace: uberon def: "a central anatomical feature of a coiled snail shell or gastropod shell. It is often only clearly visible as a structure when the shell is broken, or sliced in half vertically, or in an X-ray." [Wikipedia:Columella_(gastropod)] synonym: "columella muscle" RELATED [BTO:0000277] xref: BTO:0000277 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0008270 ! mollusc shell disjoint_from: UBERON:0008341 ! columella nasi [Term] id: UBERON:0008284 name: columnella muscle namespace: uberon def: "The muscle of the central column or axis of a spiral univalve shell." [BTO:0000277, Wikipedia:Columella_(gastropod)#Columellar_muscles] synonym: "columella muscle" RELATED [BTO:0000277] xref: BTO:0000277 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0008283 ! columnella [Term] id: UBERON:0008285 name: rumen epithelium namespace: uberon def: "The rumen epithelium is the tissue which lines the largest of the four fore stomachs in the ruminant animal -cows and sheep. Rumen epithelial cells are important because they are responsible for the absorption of nutrients from the rumen into the blood." [BTO:0001195, PMID:10764086] xref: BTO:0001195 is_a: UBERON:0010040 ! stomach non-glandular epithelium [Term] id: UBERON:0008286 name: feather calamus namespace: uberon def: "The hollow basal portion of a feather below the vane[BTO]. At the base of the feather, the rachis expands to form the hollow tubular calamus (or quill) which inserts into a follicle in the skin. The basal part of the calamus is without vanes. This part is embedded within the skin follicle and has an opening at the base (proximal umbilicus) and a small opening on the side (distal umbilicus)[WP]." [BTO:0001608] synonym: "feather quill" RELATED [BTO:0001608] xref: BTO:0001608 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008287 name: feather vane namespace: uberon is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0008292 ! vaned feature [Term] id: UBERON:0008288 name: feather rachis namespace: uberon is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008290 name: afterfeather namespace: uberon is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008291 name: down feature namespace: uberon is_a: UBERON:0000022 ! feather [Term] id: UBERON:0008292 name: vaned feature namespace: uberon is_a: UBERON:0000022 ! feather [Term] id: UBERON:0008293 name: filoplume feature namespace: uberon synonym: "filoplume" EXACT [] is_a: UBERON:0000022 ! feather [Term] id: UBERON:0008294 name: feather barb namespace: uberon def: "One of a series of branches fused to the rachis (stem) of a feather. The barbs themselves also have branches called barbules, which have hooks that lock the barbs together[WP]." [Wikipedia:Barb_(feather)] synonym: "barb" BROAD SENSU [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008295 name: feather barbule namespace: uberon is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008296 name: femoral muscle namespace: uberon def: "Origin: anterior and lateral surfaces of femur; insertion: patella, common tendon of quadriceps femoris; innervation: femoral; action, extends leg." [BTO:0002542] synonym: "crureus" RELATED [BTO:0002542] synonym: "intermediate great muscle" RELATED [BTO:0002542] synonym: "intermediate vastus muscle" RELATED [BTO:0002542] synonym: "musculus vastus intermedius" RELATED [BTO:0002542] xref: BTO:0002542 is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0008297 name: pennaceous feature namespace: uberon def: "Pennaceous feathers are also known as contour feathers. This type of feather is present in most modern birds, and has been shown in some species of maniraptoran dinosaurs. Pennaceous feathers have a central shaft (or rachis) with vanes spreading to either side. These vanes are composed of a high number of flattened barbs, that are connected to one another with barbules. The barbules are tiny strands that criss-cross on the flattened side s of the barbs. This forms a kind of miniature velcro-like mesh that holds all the barbs together, stabilizing the vanes. Flight feathers (remiges and rectrices) are specialized types of pennaceous feathers, adapted for high loadings and often strongly asymmetric for improved flight performance[WP]." [Wikipedia:Pennaceous_feather] is_a: UBERON:0008292 ! vaned feature [Term] id: UBERON:0008304 name: inner chondrogenic layer of perichondrium namespace: uberon def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes." [Wikipedia:The_Free_Encyclopedia] xref: BTO:0005090 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002222 ! perichondrium [Term] id: UBERON:0008305 name: outer fibrous layer of perichondrium namespace: uberon def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers." [Wikipedia:The_Free_Encyclopedia] xref: BTO:0005091 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002222 ! perichondrium [Term] id: UBERON:0008307 name: heart endothelium namespace: uberon xref: BTO:0004293 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004852 ! cardiovascular system endothelium [Term] id: UBERON:0008310 name: nasopharyngeal gland namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: FMA:55076 xref: SCTID:178973008 is_a: UBERON:0003295 ! pharyngeal gland [Term] id: UBERON:0008311 name: penile bulb artery namespace: uberon def: "a short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland." [Wikipedia:Bulbourethral_artery] synonym: "arteria bulbi penis" EXACT [BTO:0005087] synonym: "artery of bulb of penis" EXACT [FMA:20864] synonym: "bulbourethral artery" RELATED [BTO:0005087] xref: BTO:0005087 xref: FMA:20864 xref: SCTID:293338009 is_a: UBERON:0001637 ! artery is_a: UBERON:0004803 ! penis epithelium relationship: part_of UBERON:0000989 ! penis relationship: part_of UBERON:0008320 ! common penile artery [Term] id: UBERON:0008320 name: common penile artery namespace: uberon def: "The artery that serves blood to the penis. It subdivides into three arteries, the bulbourethral artery, the dorsal artery of the penis and the cavernosal artery." [Wikipedia:Penile_artery] comment: todo - split generic structure from arterial tree synonym: "penile artery" RELATED [BTO:0005085] xref: BTO:0005085 xref: FMA:66318 xref: SCTID:282044005 is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0004803 ! penis epithelium relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0008321 name: deep artery of penis namespace: uberon def: "The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fasciC& of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed." [Wikipedia:Deep_artery_of_the_penis] synonym: "arteria cavernosa penis" RELATED [BTO:0005086] synonym: "arteria profunda penis" EXACT [BTO:0005086] synonym: "cavernosal artery" RELATED [BTO:0005086] synonym: "deep penile artery" EXACT [FMA:19794] xref: BTO:0005086 xref: FMA:19794 xref: SCTID:244293007 is_a: UBERON:0001637 ! artery is_a: UBERON:0004803 ! penis epithelium relationship: part_of UBERON:0000989 ! penis relationship: part_of UBERON:0008320 ! common penile artery [Term] id: UBERON:0008322 name: deep artery of clitoris namespace: uberon def: "The deep artery of clitoris is a branch of the internal pudendal artery." [Wikipedia:Deep_artery_of_clitoris] xref: FMA:20870 xref: SCTID:244297008 is_a: UBERON:0001637 ! artery is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0008323 name: dorsal artery of clitoris namespace: uberon xref: FMA:20867 xref: SCTID:244298003 is_a: UBERON:0001637 ! artery is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0008324 name: erectile tissue namespace: uberon is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0008330 name: vestibulum vaginae namespace: uberon def: "The space posterior to the glans clitoridis and between the labia minora, containing the openings of the vagina, urethra, and ducts of the greater vestibular glands." [BTO:0003145, Wikipedia:Vulval_vestibule] synonym: "vaginal introitus" RELATED [BTO:0003145] synonym: "vaginal vestibule" EXACT [FMA:19970] synonym: "vestibule of vagina" EXACT [BTO:0003145, FMA:19970] synonym: "vestibulum pudendi" RELATED [BTO:0003145] xref: BTO:0003145 xref: FMA:19970 is_a: UBERON:0001349 ! vestibule relationship: part_of UBERON:0000997 ! mammalian vulva relationship: part_of UBERON:0005056 ! external female genitalia [Term] id: UBERON:0008331 name: clitoral smooth muscle namespace: uberon synonym: "clitoris smooth muscle" RELATED [BTO:0005000] xref: BTO:0005000 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0008332 name: hilum of neuraxis namespace: uberon synonym: "neuraxis hilum" EXACT [FMA:83871] xref: FMA:83871 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0008333 name: hilum of inferior olivary complex namespace: uberon def: "The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially." [Dorlands_Medical_Dictionary:MerckSource] synonym: "hilum nuclei olivaris caudalis" RELATED [BTO:0002300] synonym: "hilum nuclei olivaris inferioris" EXACT [FMA:TA] synonym: "hilum of caudal olivary nucleus" RELATED [BTO:0002300] synonym: "hilum of inferior olivary nucleus" EXACT [BTO:0002300, FMA:72612] synonym: "inferior olivary hilum" EXACT [FMA:72612] synonym: "inferior olive hilum" EXACT [FMA:72612] xref: BTO:0002300 xref: FMA:72612 is_a: UBERON:0002574 ! regional part of inferior olivary complex is_a: UBERON:0003544 ! brain white matter is_a: UBERON:0008332 ! hilum of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0008334 name: subarachnoid sulcus namespace: uberon xref: FMA:75759 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000315 ! subarachnoid space [Term] id: UBERON:0008335 name: ventrolateral sulcus of medulla oblongata namespace: uberon def: "A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve." [Dorlands_Medical_Dictionary:MerckSource] synonym: "anterolateral groove of medulla oblongata" RELATED [BTO:0002777] synonym: "anterolateral sulcus of medulla" EXACT [FMA:83797] synonym: "sulcus anterolateralis medullae oblongatae" EXACT [BTO:0002777, FMA:TA] synonym: "sulcus ventrolateralis medullae spinalis" RELATED [BTO:0002777] synonym: "ventrolateral fissure of medulla" EXACT [FMA:83797] synonym: "ventrolateral sulcus" EXACT [FMA:83797] synonym: "ventrolateral sulcus of medulla" EXACT [FMA:83797] synonym: "ventrolateral sulcus of spinal cord" RELATED [BTO:0002777] xref: BTO:0002777 xref: FMA:83797 is_a: UBERON:0008334 ! subarachnoid sulcus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0008337 name: inguinal part of abdomen namespace: uberon def: "The external junctural region between the lower part of the abdomen and the thigh." [MESH:A.01.047.365] comment: galen treats inguinal region and groin as distinct synonym: "groin" EXACT [FMA:24040] synonym: "iliac fossa viewed surgically" EXACT [FMA:24040] synonym: "iliac region" EXACT [BTO:0003358, FMA:24040] synonym: "inguen" EXACT [BTO:0003358, FMA:TA] synonym: "inguinal region" EXACT [BTO:0003358, FMA:24040] xref: BTO:0003358 xref: FMA:24040 xref: GAID:27 xref: MESH:A.01.047.365 xref: SCTID:243962005 xref: galen:InguinalRegion xref: ncithesaurus:Inguinal_Region is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0008338 name: plantar part of foot namespace: uberon def: "The sole is the bottom of the foot. In humans is the sole of the foot anatomically referred to as the plantar aspect. The equivalent surface in ungulates is the hoof." [Wikipedia:Sole_%28foot%29] synonym: "pelma" RELATED [Wikipedia:Sole_%28foot%29] synonym: "planta" EXACT [FMA:TA] synonym: "plantar region" EXACT [FMA:25000] synonym: "regio plantaris" EXACT [FMA:TA] synonym: "sole" EXACT [FMA:25000] synonym: "sole of foot" EXACT [FMA:25000, Wikipedia:Sole_%28foot%29] synonym: "sole of the foot" RELATED [Wikipedia:Sole_%28foot%29] synonym: "soles of the feet" RELATED [Wikipedia:Sole_%28foot%29] xref: BTO:0005078 xref: FMA:25000 xref: SCTID:57999000 xref: galen:SoleOfFoot xref: ncithesaurus:Plantar_Region is_a: UBERON:0005445 ! segment of foot is_a: UBERON:0008837 ! palmar/plantar part of autopod [Term] id: UBERON:0008339 name: microvascular endothelium namespace: uberon xref: BTO:0003122 is_a: UBERON:0004852 ! cardiovascular system endothelium [Term] id: UBERON:0008340 name: nasal bridge namespace: uberon def: "A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]." [Wikipedia:Nasal_bridge, http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full] xref: MA:0002874 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0006333 ! snout [Term] id: UBERON:0008341 name: columella nasi namespace: uberon def: "the tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]." [http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full] synonym: "columella" RELATED [FMA:59725] xref: FMA:59725 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:0008342 name: intestinal villus of duodenum namespace: uberon xref: FMA:63300 is_a: UBERON:0001213 ! intestinal villus is_a: UBERON:0007607 ! small intestine villus relationship: part_of UBERON:0000320 ! duodenal mucosa [Term] id: UBERON:0008343 name: intestinal villus of jejunum namespace: uberon xref: FMA:63301 is_a: UBERON:0001213 ! intestinal villus is_a: UBERON:0007607 ! small intestine villus relationship: part_of UBERON:0000399 ! jejunal mucosa [Term] id: UBERON:0008344 name: intestinal villus of ileum namespace: uberon xref: FMA:63302 is_a: UBERON:0001213 ! intestinal villus is_a: UBERON:0007607 ! small intestine villus relationship: part_of UBERON:0000331 ! ileal mucosa [Term] id: UBERON:0008345 name: ileal epithelium namespace: uberon synonym: "epithelium of ileum" EXACT [FMA:17233] xref: FMA:17233 xref: SCTID:47046000 is_a: UBERON:0001902 ! epithelium of small intestine relationship: part_of UBERON:0008344 ! intestinal villus of ileum [Term] id: UBERON:0008346 name: duodenal epithelium namespace: uberon synonym: "epithelium of duodenum" EXACT [FMA:17231] xref: FMA:17231 xref: SCTID:66036002 is_a: UBERON:0001902 ! epithelium of small intestine relationship: part_of UBERON:0008342 ! intestinal villus of duodenum [Term] id: UBERON:0008359 name: amnion epithelium namespace: uberon xref: BTO:0000897 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0008367 name: breast epithelium namespace: uberon xref: BTO:0001428 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0008397 name: tracheobronchial epithelium namespace: uberon def: "Epithelium pertaining to the trachea and bronchi." [Dorlands_Medical_Dictionary:MerckMedicus] synonym: "bronchotracheal epithelium" RELATED [BTO:0002925] xref: BTO:0002925 is_a: UBERON:0004802 ! respiratory tract epithelium [Term] id: UBERON:0008404 name: proximale tubular epithelium namespace: uberon def: "The cells lining the proximal tubule are cuboidal epithelial cells with deep basal membrane invaginations that provide a large basal surface area. The long microvilli (the brush border) lining the tubule lumen, maximize luminal surface area and make these cells ideally suited for both reabsorptive and secretory functions." [NULL:_Chapter_3, Renal_Physiology:Section_7] synonym: "proximale tubule epithelium" RELATED [BTO:0003576] xref: BTO:0003576 is_a: UBERON:0004810 ! nephron tubule epithelium relationship: part_of UBERON:0004134 ! proximal tubule [Term] id: UBERON:0008408 name: distal tubular epithelium namespace: uberon synonym: "distal tubule epithelium" RELATED [BTO:0003948] xref: BTO:0003948 is_a: UBERON:0004810 ! nephron tubule epithelium relationship: part_of UBERON:0004135 ! distal tubule [Term] id: UBERON:0008420 name: buccal epithelium namespace: uberon xref: BTO:0004803 is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! gut epithelium is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0006956 ! buccal mucosa [Term] id: UBERON:0008424 name: inguinal mammary gland namespace: uberon xref: MA:0000790 xref: SCTID:66519003 is_a: UBERON:0001911 ! mammary gland is_a: UBERON:0005398 ! female reproductive gland [Term] id: UBERON:0008425 name: mammary ridge namespace: uberon def: "A bandlike thickening of ectoderm in the embryo extending from just below the axilla to the inguinal region and giving rise to the mammary glands[Stedmans]. One of two parallel lines, formed by thickenings of the epidermis (the mammary ridge) along the ventral surface of mammals of both sexes. They extend from the upper limbs (arms) to the lower limbs (legs) and are developed in the embryo. They give rise to the mammary glands and nipples but are otherwise usually not visible in the adult. The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. These buds are either located in the thoracic region in primates, in the inguinal area in ungulates or along the entire length of the trunk in rodents and pigs. In humans, milk lines appear in the seventh week of embryonic development. After initial development of the milk lines they go into remission. Nipples develop on the milk lines of mammals. Most humans have two nipples, but in some cases more than two will develop. In most cases, these 'third nipples'band sometimes fourth nipplebgrow along the milk line[WP]." [Wikipedia:Milk_line, http://dictionary.reference.com/browse/mammary%20ridge] comment: split ridge and milk line? synonym: "mammary fold" EXACT [http://dictionary.reference.com/browse/mammary+ridge] synonym: "milk line" RELATED [Wikipedia:Milk_line] xref: EMAPA:18541 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0008426 name: transverse foramen of atlas namespace: uberon synonym: "foramen transversarium of atlas" EXACT [FMA:23998] xref: FMA:23998 xref: SCTID:281220001 is_a: UBERON:0000130 ! transverse foramen is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0008427 name: transverse foramen of axis namespace: uberon synonym: "foramen transversarium of axis" EXACT [FMA:23999] xref: FMA:23999 xref: SCTID:281221002 is_a: UBERON:0000130 ! transverse foramen is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0008428 name: ceratoglossus namespace: uberon def: "main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone." [http://www.medilexicon.com/medicaldictionary.php?t=56655] synonym: "ceratoglossus muscle" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655] synonym: "musculus ceratoglossus" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655] xref: FMA:46720 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0001572 ! hyoglossus [Term] id: UBERON:0008429 name: cervical vertebral foramen namespace: uberon xref: FMA:13480 xref: SCTID:280833008 is_a: UBERON:0001131 ! vertebral foramen [Term] id: UBERON:0008430 name: lumbar vertebral foramen namespace: uberon xref: FMA:24826 xref: SCTID:280835001 is_a: UBERON:0001131 ! vertebral foramen [Term] id: UBERON:0008431 name: sacral foramen namespace: uberon xref: FMA:31749 is_a: UBERON:0001131 ! vertebral foramen [Term] id: UBERON:0008432 name: thoracic vertebral foramen namespace: uberon xref: FMA:9143 xref: SCTID:280834002 is_a: UBERON:0001131 ! vertebral foramen [Term] id: UBERON:0008433 name: lumbar vertebral arch namespace: uberon synonym: "arch of lumbar vertebra" EXACT [FMA:16076] xref: FMA:16076 xref: SCTID:312766000 is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0003861 ! vertebral arch [Term] id: UBERON:0008434 name: cervical vertebral arch namespace: uberon synonym: "arch of cervical vertebra" EXACT [FMA:23893] xref: FMA:23893 xref: SCTID:165269004 is_a: UBERON:0003458 ! neck bone is_a: UBERON:0003861 ! vertebral arch [Term] id: UBERON:0008435 name: vertebral arch of sacral segment namespace: uberon xref: FMA:32401 is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0003861 ! vertebral arch is_a: UBERON:0005179 ! pelvis organ [Term] id: UBERON:0008436 name: thoracic vertebral arch namespace: uberon synonym: "arch of thoracic vertebra" EXACT [FMA:9151] xref: FMA:9151 xref: SCTID:312764002 is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0003861 ! vertebral arch [Term] id: UBERON:0008437 name: posterior arch of atlas namespace: uberon def: "In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores." [Wikipedia:Posterior_arch] synonym: "posterior arch" RELATED [Wikipedia:Posterior_arch] xref: FMA:23977 xref: SCTID:181892007 is_a: UBERON:0008434 ! cervical vertebral arch relationship: part_of UBERON:0001092 ! first cervical vertebra [Term] id: UBERON:0008438 name: webbed interdigital region of forelimb namespace: uberon is_a: UBERON:0006013 ! hand interdigital region is_a: UBERON:0006015 ! webbed interdigital region relationship: part_of UBERON:0008441 ! webbed hand [Term] id: UBERON:0008439 name: webbed interdigital region of hindlimb namespace: uberon synonym: "toe web" EXACT [Obol:automatic] is_a: UBERON:0006014 ! foot interdigital region is_a: UBERON:0006015 ! webbed interdigital region relationship: part_of UBERON:0008442 ! webbed foot [Term] id: UBERON:0008440 name: webbed autpod namespace: uberon is_a: UBERON:0002470 ! autopod [Term] id: UBERON:0008441 name: webbed hand namespace: uberon xref: AAO:0010120 is_a: UBERON:0002398 ! hand is_a: UBERON:0008440 ! webbed autpod [Term] id: UBERON:0008442 name: webbed foot namespace: uberon xref: AAO:0010121 is_a: UBERON:0002387 ! foot is_a: UBERON:0008440 ! webbed autpod [Term] id: UBERON:0008443 name: webbed digit namespace: uberon is_a: UBERON:0002544 ! digit [Term] id: UBERON:0008444 name: webbed forelimb digit namespace: uberon synonym: "webbed finger" EXACT [Obol:automatic] is_a: UBERON:0002389 ! hand digit is_a: UBERON:0008443 ! webbed digit [Term] id: UBERON:0008445 name: webbed hindlimb digit namespace: uberon synonym: "webbed toe" EXACT [Obol:automatic] is_a: UBERON:0001466 ! foot digit is_a: UBERON:0008443 ! webbed digit [Term] id: UBERON:0008446 name: flexor pollicis longus muscle namespace: uberon def: "The flexor pollicis longus (FPL, Latin flexor, bender; pollicis, thumb; longus, long) is a muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being 'either rudimentary or absent' in other primates." [Wikipedia:Flexor_pollicis_longus_muscle] synonym: "flexor pollicis" RELATED [Wikipedia:Flexor_pollicis_longus_muscle] synonym: "flexor pollicis longus" RELATED [Wikipedia:Flexor_pollicis_longus_muscle] xref: FMA:38481 xref: SCTID:361818001 is_a: UBERON:0004254 ! forelimb zeugopod muscle [Term] id: UBERON:0008447 name: intertarsal articulation namespace: uberon def: "Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation" [Wikipedia:Intertarsal_articulations] synonym: "articulationes intertarsale" RELATED [MESH:A.02.835.583.378.831] synonym: "articulationes intertarseae" RELATED [MESH:A.02.835.583.378.831] synonym: "intermetatarsal joint" RELATED [MESH:A.02.835.583.378.831] synonym: "intertarsal" RELATED [Wikipedia:Intertarsal_articulations] synonym: "intertarsal articulation" RELATED [Wikipedia:Intertarsal_articulations] synonym: "intertarsal joint" RELATED [MESH:A.02.835.583.378.831] synonym: "tarsal joint" RELATED [MESH:A.02.835.583.378.831] synonym: "tarsal joints" RELATED [Wikipedia:Intertarsal_articulations] xref: FMA:44281 xref: GAID:259 xref: MESH:A.02.835.583.378.831 xref: ncithesaurus:Tarsal_Joint is_a: UBERON:0001487 ! joint of foot [Term] id: UBERON:0008449 name: trochlear notch namespace: uberon def: "The semilunar notch of the ulna (trochlear notch of ulna, greater sigmoid cavity) is a large depression, formed by the olecranon and the coronoid process, and serving for articulation with the trochlea of the humerus. About the middle of either side of this notch is an indentation, which contracts it somewhat, and indicates the junction of the olecranon and the coronoid process. The notch is concave from above downward, and divided into a medial and a lateral portion by a smooth ridge running from the summit of the olecranon to the tip of the coronoid process. The medial portion is the larger, and is slightly concave transversely; the lateral is convex above, slightly concave below." [Wikipedia:Trochlear_notch] synonym: "incisura trochlearis" RELATED [Wikipedia:Trochlear_notch] synonym: "semilunar notch" RELATED [Wikipedia:Trochlear_notch] synonym: "semilunar notch of ulna" EXACT [FMA:23619] xref: FMA:23619 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna [Term] id: UBERON:0008450 name: psoas namespace: uberon def: "A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek \"psoa\", the plural meaning \"muscles of the loin\". It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology." [MESH:A.02.633.567.825] synonym: "psoas muscle" EXACT [MA:0002553] xref: BTO:0001140 xref: MA:0002553 xref: MESH:A.02.633.567.825 xref: galen:Psoas xref: ncithesaurus:Psoas_Muscle is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0008453 name: rectus capitis anterior namespace: uberon def: "The rectus capitis anterior (rectus capitis anticus minor) is a short, flat muscle, situated immediately behind the upper part of the Longus capitis. It arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process, and passing obliquely upward and medialward, is inserted into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum." [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "anterior rectus capitis" EXACT [FMA:46312] synonym: "anterior rectus capitis muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "anterior vertebral muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "recti capitis anteriores" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitis" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitis anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitis anterior muscle" EXACT [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitus anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitus anterior muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] xref: FMA:46312 xref: SCTID:244838005 is_a: UBERON:0004518 ! muscle of vertebral column [Term] id: UBERON:0008454 name: rectus capitis posterior major namespace: uberon def: "The Rectus capitis posterior major (Rectus capitis posticus major) arises by a pointed tendon from the spinous process of the axis, and, becoming broader as it ascends, is inserted into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. As the muscles of the two sides pass upward and lateralward, they leave between them a triangular space, in which the Recti capitis posteriores minores are seen. Its main actions are to extend and rotate the atlanto-occipital joint." [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "greater posterior rectus capitis" EXACT [FMA:32525] synonym: "recti capitis posteriores major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitis posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitis posterior major muscle" EXACT [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitus posterior major muscle" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] xref: FMA:32525 xref: SCTID:245994002 is_a: UBERON:0004518 ! muscle of vertebral column [Term] id: UBERON:0008455 name: rectus capitis posterior minor namespace: uberon def: "The Rectus capitis posterior minor (Rectus capitis posticus minor) arises by a narrow pointed tendon from the tubercle on the posterior arch of the atlas, and, widening as it ascends, is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. The synergists are the rectus capitus posterior major and Obliquus capitis. Connective tissue bridges were noted at the atlanto-occipital junction between the rectus capitis posterior minor muscle and the dorsal spinal dura. The perpendicular arrangement of these fibers appears to restrict dural movement toward the spinal cord. The ligamentum nuchae was found to be continuous with the posterior cervical spinal dura and the lateral portion of the occipital bone. Anatomic structures innervated by cervical nerves C1-C3 have the potential to cause headache pain. Included are the joint complexes of the upper 3 cervical segments, the dura mater, and spinal cord. The dura-muscular, dura-ligamentous connections in the upper cervical spine and occipital areas may provide anatomic and physiologic answers to the cause of the cervicogenic headache. This proposal would further explain manipulation's efficacy in the treatment of cervicogenic headache ." [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "lesser posterior rectus capitis" EXACT [FMA:32526] synonym: "recti capitis posteriores minores" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitis posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitis posterior minor muscle" EXACT [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitus posterior minor muscle" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] xref: FMA:32526 xref: SCTID:245995001 is_a: UBERON:0004518 ! muscle of vertebral column [Term] id: UBERON:0008456 name: superior articular process of lumbar vertebra namespace: uberon synonym: "cranial articular process of lumbar vertebra" EXACT [FMA:16126] xref: FMA:16126 xref: SCTID:305677003 is_a: UBERON:0001079 ! superior articular process of vertebra [Term] id: UBERON:0008457 name: superior articular process of sacral vertebra namespace: uberon synonym: "articular process of sacral segment" EXACT [FMA:16215] synonym: "processus articularis superior (os sacrum)" EXACT [FMA:16215] synonym: "processus articularis superior ossis sacri" EXACT [FMA:TA] synonym: "superior articular process of sacral segment" EXACT [FMA:16215] synonym: "superior articular process of sacrum" EXACT [FMA:16215] xref: FMA:16215 is_a: UBERON:0001079 ! superior articular process of vertebra [Term] id: UBERON:0008459 name: superior articular process of cervical vertebra namespace: uberon xref: FMA:23969 xref: SCTID:57767002 is_a: UBERON:0001079 ! superior articular process of vertebra [Term] id: UBERON:0008460 name: superior articular process of thoracic vertebra namespace: uberon synonym: "cranial articular process of thoracic vertebra" EXACT [FMA:9155] synonym: "processus articularis (zygapophysis) thoracicus superior" EXACT [FMA:9155] synonym: "superior apophyseal process" EXACT [FMA:9155] synonym: "superior zygapophysis" EXACT [FMA:9155] xref: FMA:9155 xref: SCTID:367801006 is_a: UBERON:0001079 ! superior articular process of vertebra [Term] id: UBERON:0008461 name: inferior articular process of lumbar vertebra namespace: uberon synonym: "caudal articular process of lumbar vertebra" EXACT [FMA:16127] xref: FMA:16127 xref: SCTID:306283004 is_a: UBERON:0001080 ! inferior articular process of vertebra [Term] id: UBERON:0008462 name: inferior articular process of cervical vertebra namespace: uberon xref: FMA:23970 xref: SCTID:61633005 is_a: UBERON:0001080 ! inferior articular process of vertebra [Term] id: UBERON:0008463 name: inferior articular process of thoracic vertebra namespace: uberon synonym: "caudal articular process of thoracic vertebra" EXACT [FMA:9156] synonym: "inferior apophyseal process" EXACT [FMA:9156] synonym: "inferior zygapophysis" EXACT [FMA:9156] synonym: "processus articularis (zygapophysis) thoracicus inferior" EXACT [FMA:9156] xref: FMA:9156 xref: SCTID:367814007 is_a: UBERON:0001080 ! inferior articular process of vertebra [Term] id: UBERON:0008464 name: abductor hallucis muscle namespace: uberon def: "The Abductor hallucis lies along the medial border of the foot and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe." [Wikipedia:Abductor_hallucis_muscle] synonym: "abductor hallucis" RELATED [Wikipedia:Abductor_hallucis_muscle] xref: FMA:37448 xref: SCTID:181723001 xref: Wikipedia:Abductor_hallucis_muscle is_a: UBERON:0001498 ! muscle of foot is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0008338 ! plantar part of foot [Term] id: UBERON:0008465 name: abductor pollicis brevis muscle namespace: uberon def: "The abductor pollicis brevis is a muscle in the hand that functions as an abductor of the thumb." [Wikipedia:Abductor_pollicis_brevis_muscle] synonym: "abductor brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle] synonym: "abductor pollicis brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle] xref: FMA:37373 xref: SCTID:181648007 xref: Wikipedia:Abductor_pollicis_brevis_muscle is_a: UBERON:0001500 ! muscle of hand is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0008488 name: cremaster muscle namespace: uberon def: "The cremaster muscle is a muscle that covers the testis." [Wikipedia:Cremaster_muscle] synonym: "cremaster" EXACT [FMA:21531] synonym: "cremaster muscle" RELATED [Wikipedia:Cremaster_muscle] synonym: "cremasteric muscle" RELATED [Wikipedia:Cremaster_muscle] synonym: "muscle of riolan (cremaster)" EXACT [FMA:21531] synonym: "musculus cremaster" EXACT [FMA:TA] synonym: "musculus cremaster " EXACT [FMA:TA] xref: EMAPA:31250 xref: FMA:21531 xref: SCTID:244948006 xref: ncithesaurus:Cremaster_Muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003135 ! male reproductive organ [Term] id: UBERON:0008521 name: gluteus minimus namespace: uberon def: "The gluteus minimus (or glutC&us minimus), the smallest of the three gluteal muscles, is situated immediately beneath the gluteus medius." [Wikipedia:Gluteus_minimus_muscle] synonym: "glut%c3%a6us minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "glutaeus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus muscle" EXACT [] xref: FMA:22317 xref: SCTID:181676004 is_a: UBERON:0002000 ! gluteal muscle relationship: part_of UBERON:0004470 ! musculature of pelvic girdle [Term] id: UBERON:0008522 name: nasal muscle namespace: uberon synonym: "muscle of nose" EXACT [Obol:automatic] xref: FMA:73758 xref: SCTID:244730009 xref: ncithesaurus:Nasal_Muscle is_a: UBERON:0001577 ! muscle of face is_a: UBERON:0003831 ! respiratory system muscle is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0008523 name: infrahyoid muscle namespace: uberon def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoid" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoid muscle" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoidala" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "strap muscle" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "strap muscles" RELATED [Wikipedia:Infrahyoid_muscles] xref: FMA:13338 xref: SCTID:244829008 is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0008529 name: piriformis namespace: uberon def: "The piriformis (from Latin piriformis = \"pear shaped\") is a muscle in the gluteal region of the lower limb." [Wikipedia:Piriformis_muscle] synonym: "m.piriformis" EXACT [FMA:19082] synonym: "musculus piriformis" RELATED [Wikipedia:Piriformis_muscle] synonym: "piriform muscle" RELATED [Wikipedia:Piriformis_muscle] synonym: "piriformis" RELATED [Wikipedia:Piriformis_muscle] xref: FMA:19082 is_a: UBERON:0002000 ! gluteal muscle relationship: part_of UBERON:0004470 ! musculature of pelvic girdle [Term] id: UBERON:0008537 name: quadratus femoris namespace: uberon def: "The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum." [Wikipedia:Quadratus_femoris_muscle] synonym: "quadratus femoris muscle" RELATED [Wikipedia:Quadratus_femoris_muscle] xref: FMA:22321 is_a: UBERON:0002000 ! gluteal muscle relationship: part_of UBERON:0004470 ! musculature of pelvic girdle [Term] id: UBERON:0008538 name: muscle of posterior compartment of thigh namespace: uberon def: "The posterior fascial compartment of the thigh contains the knee flexors and hip extensors. It consists of the following muscles: biceps femoris semitendinosus semimembranosus The muscles here (except for the short head of the biceps femoris) are the hamstrings." [Wikipedia:Posterior_compartment_of_thigh] synonym: "posterior fascial compartment of thigh" RELATED [Wikipedia:Posterior_compartment_of_thigh] synonym: "posterior femoral muscle" EXACT [FMA:22427] synonym: "posterior femoral muscles" RELATED [Wikipedia:Posterior_compartment_of_thigh] xref: FMA:22427 is_a: UBERON:0004252 ! hindlimb stylopod muscle [Term] id: UBERON:0008544 name: splenius cervicis namespace: uberon def: "The splenius cervicis (splenius colli) arises by a narrow tendinous band from the spinous processes of the third to the sixth thoracic vertebrae; it is inserted, by tendinous fasciculi, into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae." [Wikipedia:Splenius_cervicis_muscle] synonym: "splenius cervicis muscle" RELATED [Wikipedia:Splenius_cervicis_muscle] xref: FMA:22681 is_a: UBERON:0002252 ! splenius [Term] id: UBERON:0008546 name: iliocostalis cervicis namespace: uberon def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior)." [Wikipedia:Iliocostalis] synonym: "erector spinae - iliocostalis" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis cervicis muscle" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis lumborum" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis muscle" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis thoracis" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis thoracis muscle" RELATED [Wikipedia:Iliocostalis] xref: FMA:22704 is_a: UBERON:0002251 ! iliocostalis [Term] id: UBERON:0008549 name: prevertebral muscle namespace: uberon def: "The prevertebral muscles are the muscles located between the prevertebral fascia (older definition) and the vertebral column, i.e. , the longus capitis and longus colli muscles. It also includes the recti capitis anterior and lateralis." [Wikipedia:Prevertebral_muscles] synonym: "flexor muscle of vertebral column" EXACT [FMA:32514] xref: FMA:32514 is_a: UBERON:0004518 ! muscle of vertebral column [Term] id: UBERON:0008571 name: suprahyoid muscle namespace: uberon def: "The term suprahyoid refers to the region above (superior to) the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoid" RELATED [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoidala" RELATED [Wikipedia:Suprahyoid_muscles] xref: FMA:46290 xref: SCTID:244824003 is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0008572 name: posterior crico-arytenoid namespace: uberon def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoaryt%c3%a6noideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoarytaenoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoid muscle" EXACT [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoideus" EXACT [FMA:46576] xref: FMA:46576 xref: SCTID:244812005 is_a: UBERON:0006328 ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0008573 name: lateral crico-arytenoid namespace: uberon def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoaryt%c3%a6noideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoaryt%c3%a6noideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoid muscle" EXACT [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoideus" EXACT [FMA:46579] xref: FMA:46579 xref: SCTID:244813000 is_a: UBERON:0006328 ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0008574 name: transverse arytenoid namespace: uberon def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [Wikipedia:Transverse_arytenoid] synonym: "tranverse arytenoid muscle" RELATED [Wikipedia:Transverse_arytenoid] xref: FMA:46582 is_a: UBERON:0006328 ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0008575 name: oblique arytenoid namespace: uberon def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [Wikipedia:Oblique_arytenoid] synonym: "oblique arytenoid muscle" RELATED [Wikipedia:Oblique_arytenoid] xref: FMA:46583 is_a: UBERON:0006328 ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0008576 name: thyro-arytenoid namespace: uberon def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoaryt%c3%a6noideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoepiglotticus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid %26 vocalis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid" EXACT [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] xref: FMA:46588 xref: SCTID:91561000 xref: ncithesaurus:Thyroarytenoid_Muscle is_a: UBERON:0006328 ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0008577 name: vocalis namespace: uberon def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [Wikipedia:Vocal_muscle] synonym: "vocal muscle" EXACT [FMA:46591] synonym: "vocalis muscle" EXACT [] xref: FMA:46591 xref: ncithesaurus:Vocalis_Muscle is_a: UBERON:0006328 ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0008576 ! thyro-arytenoid [Term] id: UBERON:0008582 name: superior longitudinal muscle of tongue namespace: uberon def: "The Longitudinalis linguC& superior (Superior lingualis) is a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis lingu%c3%a6 superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "musculus longitudinalis superior" EXACT [FMA:46693] synonym: "superior longitudinal muscle" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] xref: FMA:46693 xref: SCTID:244790006 is_a: UBERON:0001576 ! intrinsic muscle of tongue [Term] id: UBERON:0008583 name: transverse muscle of tongue namespace: uberon def: "The Transversus linguC& (tansverse lingualis) is a muscle of the tongue. It consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue] synonym: "transverse lingual muscle" EXACT [FMA:46695] synonym: "transverse muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus lingu%c3%a6" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus linguae" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue] xref: FMA:46695 xref: SCTID:244792003 is_a: UBERON:0001576 ! intrinsic muscle of tongue [Term] id: UBERON:0008584 name: vertical muscle of tongue namespace: uberon def: "The Verticalis linguC& (Vertical lingualis) is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue] synonym: "vertical lingual muscle" EXACT [FMA:46696] synonym: "vertical muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis lingu%c3%a6" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis lingu%c3%a6 muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguae" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguae muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] xref: FMA:46696 xref: SCTID:244793008 is_a: UBERON:0001576 ! intrinsic muscle of tongue [Term] id: UBERON:0008585 name: levator veli palatini namespace: uberon def: "The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side." [Wikipedia:Levator_veli_palatini] synonym: "levator palati" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli palatini muscle" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator velum palatini muscle" RELATED [Wikipedia:Levator_veli_palatini] xref: FMA:46727 xref: SCTID:244795001 is_a: UBERON:0003682 ! palatal muscle [Term] id: UBERON:0008586 name: tensor veli palatini namespace: uberon def: "The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate." [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati muscle" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor veli palatini" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor veli palatini muscle" EXACT [] xref: FMA:46730 xref: SCTID:361815003 is_a: UBERON:0003682 ! palatal muscle [Term] id: UBERON:0008588 name: procerus namespace: uberon def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [Wikipedia:Procerus_muscle] synonym: "depressor glabellae" RELATED [Wikipedia:Procerus_muscle] synonym: "procerus muscle" RELATED [Wikipedia:Procerus_muscle] synonym: "pyramidalis nasi" RELATED [Wikipedia:Procerus_muscle] xref: FMA:46769 is_a: UBERON:0008522 ! nasal muscle [Term] id: UBERON:0008589 name: depressor septi nasi namespace: uberon def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor al%c3%a6 nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor alae nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor septi" EXACT [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor septi nasi muscle" RELATED [Wikipedia:Depressor_septi_nasi_muscle] xref: FMA:46777 xref: SCTID:244733006 is_a: UBERON:0008522 ! nasal muscle [Term] id: UBERON:0008591 name: depressor supercilii namespace: uberon def: "The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella." [Wikipedia:Depressor_supercilii_muscle] synonym: "depressor supercilii muscle" RELATED [Wikipedia:Depressor_supercilii_muscle] xref: FMA:46798 is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008592 name: levator labii superioris alaeque nasi namespace: uberon def: "The levator labii superioris alaeque nasi muscle is, translated from Latin, the \"lifter of the upper lip and of the wing of the nose\". It has the longest name of any muscle in an animal." [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "alaeque" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "elvis muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "levator labii superioris alaequae nasi muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "levator labii superioris alaeque nasi" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] xref: FMA:46802 is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008593 name: zygomaticus major namespace: uberon def: "The Zygomatic major is a muscle of the human body. It is a muscle of facial expression which draws the angle of the mouth superiorly and posteriorly. Like all muscles of facial expression, the zygomatic major is innervated by the facial nerve (Cranial Nerve VII). The Zygomaticus extends from each zygomatic arch to the corners of the mouth. It raises the corners of the mouth when a person smiles. Dimples may be caused by variations in the structure of this muscle." [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic major" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic major muscle" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic muscle" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomaticcus major" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomaticus major" RELATED [Wikipedia:Zygomaticus_major_muscle] xref: FMA:46810 xref: SCTID:244739005 xref: ncithesaurus:Zygomaticus_Major is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008594 name: zygomaticus minor namespace: uberon def: "The zygomaticus minor is a muscle of facial expression. It originates from malar bone and continues with orbicularis oculi on the lateral face of the Levator labii superioris and then inserts into the outer part of the upper lip. Do not confuse this with the Zygomaticus major, which insets into the angle of the mouth. It draws the upper lip backward, upward, and outward (used in making sad facial expressions). </gallery> Like all muscles of facial expression, it is innervated by the facial nerve (CN VII)." [Wikipedia:Zygomaticus_minor_muscle] synonym: "zygomaticus minor" RELATED [Wikipedia:Zygomaticus_minor_muscle] xref: FMA:46811 xref: ncithesaurus:Zygomaticus_Minor is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008595 name: levator anguli oris namespace: uberon def: "The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris." [Wikipedia:Levator_anguli_oris] synonym: "caninus" RELATED [Wikipedia:Levator_anguli_oris] synonym: "caninus muscle" RELATED [Wikipedia:Levator_anguli_oris] synonym: "levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris] synonym: "levator anguli oris muscle" RELATED [Wikipedia:Levator_anguli_oris] synonym: "musculus levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris] xref: FMA:46822 is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008596 name: mentalis namespace: uberon def: "The Mentalis is a paired central muscle of the lower lip, situated at the tip of the chin. It raises and pushes up the lower lip, causing wrinkling of the chin, as in doubt or displeasure. It is ometimes referred to as the \"pouting muscle. \" Its fibers arise from the incisive fossa of the mandible, then course vertically downward to insert in the skin of the chin. A movement disorder of the mentalis muscle is Geniospasm which is a benign but socially excluding genetic disorder." [Wikipedia:Mentalis] synonym: "m mentalis" RELATED [Wikipedia:Mentalis] synonym: "mentalis muscle" RELATED [Wikipedia:Mentalis] xref: FMA:46825 is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008597 name: depressor anguli oris namespace: uberon def: "The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth." [Wikipedia:Depressor_anguli_oris_muscle] synonym: "depressor anguli oris" RELATED [Wikipedia:Depressor_anguli_oris_muscle] synonym: "triangularis" RELATED [Wikipedia:Depressor_anguli_oris_muscle] synonym: "triangularis muscle" RELATED [Wikipedia:Depressor_anguli_oris_muscle] xref: FMA:46828 is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008598 name: risorius namespace: uberon def: "The risorius arises in the fascia over the parotid gland and, passing horizontally forward, superficial to the platysma, inserts onto the skin at the angle of the mouth. It is a narrow bundle of fibers, broadest at its origin, but varies much in its size and form." [Wikipedia:Risorius] synonym: "risorius muscle" RELATED [Wikipedia:Risorius] xref: FMA:46838 is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008603 name: helicis major namespace: uberon def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [Wikipedia:Helicis_major] xref: FMA:48968 is_a: UBERON:0001596 ! intrinsic auricular muscle relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0008604 name: helicis minor namespace: uberon def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [Wikipedia:Helicis_minor] xref: FMA:48971 is_a: UBERON:0001596 ! intrinsic auricular muscle relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0008605 name: tragicus namespace: uberon def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [Wikipedia:Tragicus] xref: FMA:48974 is_a: UBERON:0001596 ! intrinsic auricular muscle relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0008606 name: antitragicus namespace: uberon def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [Wikipedia:Antitragicus] xref: FMA:48980 is_a: UBERON:0001596 ! intrinsic auricular muscle relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0008607 name: transverse muscle of auricle namespace: uberon def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [Wikipedia:Transverse_muscle_of_auricle] synonym: "transverse muscle of pinna" EXACT [FMA:48983] synonym: "transversus auriculae" EXACT [Wikipedia:Transverse_muscle_of_auricle] synonym: "transversus auricularis" EXACT [FMA:48983] xref: FMA:48983 is_a: UBERON:0001596 ! intrinsic auricular muscle relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0008608 name: oblique muscle of auricle namespace: uberon def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [Wikipedia:Oblique_muscle_of_auricle] synonym: "oblique muscle of pinna" EXACT [FMA:48986] synonym: "obliquus auricul%c3%a6" RELATED [Wikipedia:Oblique_muscle_of_auricle] synonym: "obliquus auriculae" EXACT [Wikipedia:Oblique_muscle_of_auricle] synonym: "obliquus auricularis muscle" EXACT [FMA:48986] xref: FMA:48986 xref: SCTID:244768006 is_a: UBERON:0001596 ! intrinsic auricular muscle relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0008609 name: transversus menti namespace: uberon def: "The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face." [Wikipedia:Transverse_muscle_of_the_chin] synonym: "transverse menti" EXACT [FMA:49080] synonym: "transversus menti" RELATED [Wikipedia:Transverse_muscle_of_the_chin] xref: FMA:49080 is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0008611 name: scalene muscle namespace: uberon def: "The scalene muscles (from greek ON:N1N;N7N=OO, \"skew\") are a group of three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8." [Wikipedia:Scalene_muscles] synonym: "lateral cervical muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral cervical muscles" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral vertebral muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "m scalenus" RELATED [Wikipedia:Scalene_muscles] synonym: "scalene muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "scalene muscles" EXACT [Wikipedia:Scalene_muscles] synonym: "scalenes" RELATED [Wikipedia:Scalene_muscles] synonym: "scaleni" RELATED [Wikipedia:Scalene_muscles] synonym: "scalenus" RELATED [Wikipedia:Scalene_muscles] synonym: "scalenus muscle" EXACT [FMA:64829] xref: FMA:64829 xref: SCTID:244843003 xref: ncithesaurus:Scalene_Muscle is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0008612 name: muscle of pelvic diaphragm namespace: uberon def: "The pelvic floor or pelvic diaphragm is composed of muscle fibers of the levator ani, the coccygeus, and associated connective tissue which span the area underneath the pelvis. The pelvic diaphragm is a muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. The pelvic floor separates the pelvic cavity above from the perineal region below. The right and left levator ani lie almost horizontally in the floor of the pelvis, separated by a narrow gap that transmits the urethra, vagina, and anal canal. The levator ani is usually considered in three parts: pubococcygeus, puborectalis, and iliococcygeus. The pubococcygeus, the main part of the levator, runs backward from the body of the pubis toward the coccyx and may be damaged during parturition. Some fibers are inserted into the prostate, urethra, and vagina. The right and left puborectalis unite behind the anorectal junction to form a muscular sling . Some regard them as a part of the sphincter ani externus. The iliococcygeus, the most posterior part of the levator ani, is often poorly developed. The coccygeus, situated behind the levator ani and frequently tendinous as much as muscular, extends from the ischial spine to the lateral margin of the sacrum and coccyx. The pelvic cavity of the true pelvis has the pelvic floor as its inferior border (and the pelvic brim as its superior border. ) The perineum has the pelvic floor as its superior border. Some sources do not consider \"pelvic floor\" and \"pelvic diaphragm\" to be identical, with the \"diaphragm\" consisting of only the levator ani and coccygeus, while the \"floor\" also includes the perineal membrane and deep perineal pouch. However, other sources include the fascia as part of the diaphragm. In practice, the two terms are often used interchangeably. Inferiorly, the pelvic floor extends into the anal triangle." [Wikipedia:Pelvic_floor] synonym: "diaphragm of the pelvis" RELATED [Wikipedia:Pelvic_floor] synonym: "muscle of pelvic floor" EXACT [FMA:64856] synonym: "pelvic diaphragm" RELATED [Wikipedia:Pelvic_floor] synonym: "pelvic diaphragm muscle" EXACT [FMA:64856] synonym: "pelvic floor muscles" RELATED [Wikipedia:Pelvic_floor] synonym: "pelvic muscles" RELATED [Wikipedia:Pelvic_floor] xref: FMA:64856 xref: ncithesaurus:Pelvic_Floor_Muscle is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0008617 name: innermost intercostal muscle namespace: uberon def: "The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly." [Wikipedia:Innermost_intercostal_muscle] synonym: "musculus intercostalis intimus" RELATED [Wikipedia:Innermost_intercostal_muscle] xref: FMA:9758 xref: SCTID:368054008 is_a: UBERON:0001111 ! intercostal muscle [Term] id: UBERON:0008618 name: subcostal muscle namespace: uberon def: "The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni." [Wikipedia:Subcostalis_muscle] synonym: "subcostal muscles" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales muscle" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales muscles" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostalis" RELATED [Wikipedia:Subcostalis_muscle] xref: FMA:9759 xref: SCTID:244914005 is_a: UBERON:0002426 ! chest muscle [Term] id: UBERON:0008622 name: scalenus anterior namespace: uberon def: "The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove." [Wikipedia:Scalenus_anterior] synonym: "anterior scalene" EXACT [Wikipedia:Scalenus_anterior] synonym: "scalenus anterior muscle" RELATED [Wikipedia:Scalenus_anterior] synonym: "scalenus anticus" RELATED [Wikipedia:Scalenus_anterior] xref: FMA:13385 is_a: UBERON:0008611 ! scalene muscle [Term] id: UBERON:0008712 name: stylohyoid namespace: uberon def: "The stylohyoid muscle is a slender muscle, lying anterior, and superior of the posterior belly of the digastric muscle. It shares this muscle's innervation by the facial nerve." [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoid" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus muscle" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus muscles" RELATED [Wikipedia:Stylohyoid_muscle] xref: FMA:9625 is_a: UBERON:0008571 ! suprahyoid muscle [Term] id: UBERON:0008713 name: pectoral girdle and thoracic body wall skeletal muscle namespace: uberon xref: EHDAA2:0001421 xref: RETIRED_EHDAA2:0001422 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0008714 name: pre-muscle mass namespace: uberon synonym: "pre muscle mass" EXACT [] synonym: "premuscle mass" EXACT [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0008715 name: muscle tissue of prostate namespace: uberon synonym: "prostate gland muscle tissue" EXACT [OBOL:automatic] synonym: "prostate muscle tissue" EXACT [OBOL:automatic] xref: ncithesaurus:Prostatic_Muscular_Tissue is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0008716 name: hilum of kidney namespace: uberon synonym: "renal hilum" EXACT [FMA:15610] xref: FMA:15610 xref: SCTID:279370006 xref: galen:HilumOfKidney is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004885 ! hilum is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0008772 name: proximal epiphysis of tibia namespace: uberon synonym: "head of tibia" EXACT [FMA:33113] synonym: "proximal end of tibia" EXACT [FMA:33113] synonym: "upper end of tibia" EXACT [FMA:33113] xref: FMA:33113 xref: SCTID:302526005 xref: ncithesaurus:Head_of_the_Tibia is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004383 ! epiphysis of tibia [Term] id: UBERON:0008775 name: proximal epiphysis of fibula namespace: uberon synonym: "head of fibula" EXACT [FMA:33729] synonym: "proximal end of fibula" EXACT [FMA:33729] synonym: "upper end of fibula" EXACT [FMA:33729] xref: FMA:33729 xref: SCTID:182080006 xref: ncithesaurus:Head_of_the_Fibula is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004388 ! epiphysis of fibula [Term] id: UBERON:0008776 name: inner cell mass derived hypoblast namespace: uberon def: "The hypoblast is a tissue type that forms from the inner cell mass. It lies beneath the epiblast and consists of small cuboidal cells. Extraembryonic endoderm is derived from hypoblast." [Wikipedia:Hypoblast] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. xref: EHDAA2:0000796 is_a: UBERON:0000089 ! hypoblast [Term] id: UBERON:0008777 name: hypaxial musclulature namespace: uberon def: "trunk muscles that lie ventral to the horizontal septum of the vertebrae." [Wikipedia:Epaxial_and_Hypaxial_muscles] synonym: "hypaxial muscle" RELATED [XAO:0003228] xref: AAO:0000228 xref: XAO:0003228 is_a: UBERON:0004479 ! musculature of trunk relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: UBERON:0008778 name: epaxial musclulature namespace: uberon def: "trunk muscles that lies dorsal to the horizontal septum." [Wikipedia:Epaxial_and_Hypaxial_muscles] synonym: "epaxial muscle" EXACT [XAO:0003229] xref: AAO:0000142 xref: XAO:0003229 is_a: UBERON:0004479 ! musculature of trunk relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: UBERON:0008779 name: subclavius namespace: uberon def: "The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla." [Wikipedia:Subclavius_muscle] synonym: "subclavicular muscle" RELATED [Wikipedia:Subclavius_muscle] xref: FMA:13410 xref: ncithesaurus:Subclavius is_a: UBERON:0001495 ! pectoral muscle [Term] id: UBERON:0008780 name: inner cell mass derived epiblast namespace: uberon subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. synonym: "embryonic epiblast" RELATED [MP:0003886] xref: EHDAA2:0000444 xref: EHDAA:42 xref: EHDAA:75 xref: EMAPA:16050 xref: ncithesaurus:Epiblast is_a: UBERON:0002532 ! epiblast relationship: part_of UBERON:0000091 ! bilaminar disc [Term] id: UBERON:0008781 name: blastodisc derived epiblast namespace: uberon comment: part of blastodisc in BTO; indirect development in ZFA: df DEL df deep blastomere isa blastomere po blastodisc subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. xref: TAO:0000018 xref: ZFA:0000018 is_a: UBERON:0002532 ! epiblast relationship: part_of UBERON:0002541 ! germ ring property_value: "dubious_for_taxon" NCBITaxon:40674 [Term] id: UBERON:0008783 name: dorsal venous arch namespace: uberon def: "The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein." [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "arcus venosus dorsalis pedis" EXACT [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "dorsal venous arch of foot" EXACT [FMA:44356] xref: FMA:44356 xref: MA:0002110 xref: SCTID:231189006 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0008784 name: lower limb segment namespace: uberon synonym: "free lower limb segment" EXACT [FMA:24877] synonym: "free lower limb subdivision" EXACT [FMA:24877] synonym: "segment of free lower limb" EXACT [FMA:24877] synonym: "subdivision of free lower limb" EXACT [FMA:24877] xref: FMA:24877 is_a: UBERON:0002529 ! limb segment [Term] id: UBERON:0008785 name: upper limb segment namespace: uberon synonym: "free upper limb segment" EXACT [FMA:24876] synonym: "free upper limb subdivision" EXACT [FMA:24876] synonym: "segment of free upper limb" EXACT [FMA:24876] synonym: "subdivision of free upper limb" EXACT [FMA:24876] xref: FMA:24876 is_a: UBERON:0002529 ! limb segment [Term] id: UBERON:0008786 name: third trochanter namespace: uberon def: "The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed." [Wikipedia:Third_trochanter] xref: FMA:75824 is_a: UBERON:0000980 ! trochanter relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0008787 name: fourth trochanter namespace: uberon def: "a knob-like feature on the medial side of the femur that serves as a muscle attachment." [Wikipedia:Fourth_trochanter] comment: The fourth trochanter first appeared in the Erythrosuchidae, large basal archosaurian predators of the early Triassic period. This seemingly insignificant detail may have made the evolution of dinosaurs possible (all early dinosaurs and many later ones were bipeds), and may also be connected with the ability of the archosaurs or their immediate ancestors to survive the catastrophic Permian-Triassic extinction event[WP]. is_a: UBERON:0000980 ! trochanter [Term] id: UBERON:0008788 name: posterior cranial fossa namespace: uberon def: "The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE." [MESH:A.01.456.830.200, Wikipedia:Posterior_cranial_fossa] synonym: "posterior fossa" BROAD [ncithesaurus:Posterior] xref: FMA:54368 xref: GAID:85 xref: MESH:A.01.456.830.200 xref: ncithesaurus:Posterior_Fossa is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0008789 name: cranial fossa namespace: uberon def: "any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity" [http://mw1.merriam-webster.com/medical/cranial%20fossa] comment: editor note - todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae is_a: UBERON:0004704 ! bone fossa [Term] id: UBERON:0008790 name: rugal fold namespace: uberon def: "a ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [Wikipedia:Rugae, http://medical-dictionary.thefreedictionary.com/Rugal+folds] synonym: "ruga" EXACT [Wikipedia:Rugae] synonym: "rugae" RELATED PLURAL [Wikipedia:Rugae] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0008791 name: rugal fold of stomach namespace: uberon synonym: "gastric ruga(e)" EXACT [FMA:15106] synonym: "ruga of stomach" EXACT [FMA:15106] xref: FMA:15106 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0008790 ! rugal fold [Term] id: UBERON:0008798 name: rugal fold of vagina namespace: uberon synonym: "ruga of vagina" EXACT [FMA:19991] synonym: "vaginal ruga" EXACT [FMA:19991] xref: FMA:19991 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008790 ! rugal fold [Term] id: UBERON:0008799 name: transverse palatine fold namespace: uberon def: "a masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances." [http://www.drugs.com/dict/transverse-palatine-fold.html] comment: note that this class refers to the singular and the FMA class refers to the set. In future this class may be split. synonym: "palatine fold" EXACT [FMA:75652] synonym: "palatine rugae" EXACT PLURAL [FMA:75652] synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] synonym: "plicae palatinae transversae" EXACT [FMA:75652, FMA:TA] synonym: "ruga of palate" EXACT [UBERON:cjm] synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] synonym: "rugae of palate" EXACT PLURAL [UBERON:cjm] synonym: "rugae palatinae" EXACT PLURAL [FMA:75652, FMA:TA] synonym: "transverse palatine folds" EXACT PLURAL [FMA:75652] synonym: "transverse palatine folds set" EXACT PLURAL [FMA:75652] synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] xref: FMA:75652 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0008790 ! rugal fold [Term] id: UBERON:0008800 name: parietal endoderm namespace: uberon def: "primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]" [MP:0011187, PMID:19201946] synonym: "distal endoderm" RELATED [EMAPA:16053] xref: EMAPA:16053 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0008801 name: parotid gland primordium namespace: uberon xref: EHDAA2:0001413 xref: EHDAA:9246 is_a: UBERON:0001048 ! primordium [Term] id: UBERON:0008802 name: cheek pouch namespace: uberon def: "A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food." [BTO:0002224] xref: BTO:0002224 xref: SCTID:31293007 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008803 ! skin of cheek relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0008803 name: skin of cheek namespace: uberon synonym: "cheek skin" EXACT [FMA:24759] xref: FMA:24759 xref: SCTID:181472009 is_a: UBERON:1000021 ! skin of face [Term] id: UBERON:0008804 name: stylopharyngeus namespace: uberon def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle] synonym: "m stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "musculus stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "stylopharyngeus muscle" RELATED [Wikipedia:Stylopharyngeus_muscle] xref: FMA:46664 xref: ncithesaurus:Stylopharyngeus is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: UBERON:0008805 name: gingival groove namespace: uberon def: "The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin." [Wikipedia:Gingival_sulcus] synonym: "gingival sulcus" EXACT [FMA:74580] synonym: "sulcus gingivalis" EXACT [FMA:TA] xref: FMA:74580 xref: SCTID:245753001 xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Gingival_sulcus.PNG is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0008806 name: buccal funnel namespace: uberon synonym: "suctorial disc" EXACT [] synonym: "suctorial disk" EXACT [] is_a: UBERON:0000166 ! oral opening [Term] id: UBERON:0008807 name: coagulating gland namespace: uberon synonym: "anterior prostate gland" EXACT [EMAPA:29794] synonym: "prostate gland anterior lobe" RELATED [MA:0000402] xref: BTO:0000265 xref: EMAPA:29794 xref: MA:0000402 xref: SCTID:78779004 xref: ncithesaurus:Coagulating_Gland is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0010147 ! male accessory sex gland relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0008808 name: prostate gland dorsolateral lobe namespace: uberon xref: MA:0001739 is_a: UBERON:0001328 ! lobe of prostate [Term] id: UBERON:0008809 name: foramina of scarpa namespace: uberon def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [Wikipedia:Foramina_of_Scarpa] synonym: "foramina of scarpa" RELATED [Wikipedia:Foramina_of_Scarpa] xref: Wikipedia:Foramina_of_Scarpa is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005871 ! palatine process of maxilla [Term] id: UBERON:0008810 name: nasopalatine nerve namespace: uberon def: "One branch of the posterior superior nasal branches (trigeminal, maxillary branch), longer and larger than the others, is named the nasopalatine nerve (sometimes called the long sphenopalatine nerve). It enters the nasal cavity through the sphenopalatine foramen, passes across the roof of the nasal cavity below the orifice of the sphenoidal sinus to reach the septum, and then runs obliquely downward and forward between the periosteum and mucous membrane of the lower part of the septum. It descends to the roof of the mouth through the incisive canal and communicates with the corresponding nerve of the opposite side and with the greater palatine nerve. It supplies the palatal structures around the upper central and lateral incisors and the canines (the upper front six teeth). It also furnishes a few filaments to the mucous membrane of the nasal septum. The medial superior posterior nasal branches of maxillary nerve usually branches from the nasopalatine nerve." [Wikipedia:Nasopalatine_nerve] synonym: "Scarpa's nerve" EXACT [FMA:52797] synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve] xref: FMA:52797 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0008811 name: intromittent organ namespace: uberon def: "an external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]." [Wikipedia:Intromittent_organ] comment: this is a broad grouping class connecting a number of different analagous organs by their function. We place the insect aedeagus here rather than penis, although this is somewhat arbitrary given the broadness of the current definition subset: grouping_class ! Subset consisting of classes creating for grouping purposes subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "aedeagus" NARROW SENSU [FBbt:00004850] xref: AAO:0010255 xref: FBbt:00004850 xref: HAO:0000091 xref: TGMA:0000585 is_a: UBERON:0003133 ! reproductive organ is_a: UBERON:0003135 ! male reproductive organ relationship: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0007023 {gci_relation="part_of",gci_filler="NCBITaxon:7227"} ! adult organism [Term] id: UBERON:0008812 name: hemipenis namespace: uberon def: "one of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands" [Wikipedia:Hemipenis] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "hemipenes" RELATED PLURAL [Wikipedia:Hemipenis] is_a: UBERON:0008811 ! intromittent organ [Term] id: UBERON:0008813 name: helicotrema namespace: uberon def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [Wikipedia:Helicotrema] synonym: "Scarpa's orifice" EXACT [FMA:61275] synonym: "apex of cochlea" BROAD [Wikipedia:Cochlea] synonym: "cochlear apex" BROAD [Wikipedia:Cochlea] xref: FMA:61275 xref: SCTID:279775003 xref: ncithesaurus:Helicotrema is_a: UBERON:0000161 ! orifice is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0002499 ! cochlear labyrinth [Term] id: UBERON:0008814 name: pharyngeal system namespace: uberon def: "A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph] synonym: "pharyngeal apparatus" EXACT [] synonym: "pharyngeal arch region" EXACT [EHDAA2:0000187] synonym: "pharyngeal arches and clefts" RELATED [] xref: EHDAA2:0000187 xref: ncithesaurus:Pharyngeal_Apparatus is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0008815 name: pharyngeal slit namespace: uberon def: "filter-feeding organs found in non-vertebrate chordates (lancelets and tunicates) and hemichordates living in aquatic environments. These repeated segments are controlled by similar developmental mechanisms." [Wikipedia:Pharyngeal_slit] comment: Editor/Taxon notes: requires review. Kardong uses the term pharyngeal slit for Chondrichthyans subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0000062 ! organ [Term] id: UBERON:0008816 name: embryonic head namespace: uberon xref: FBbt:00000155 is_a: UBERON:0000033 ! head is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0008817 name: thymus primordium endoderm namespace: uberon is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000925 ! endoderm [Term] id: UBERON:0008818 name: superior mediastinum namespace: uberon def: "The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind." [Wikipedia:Superior_mediastinum] synonym: "superior mediastinal part of chest" EXACT [FMA:9827] xref: FMA:9827 xref: SCTID:362687003 xref: ncithesaurus:Superior_Mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0003728 ! mediastinum [Term] id: UBERON:0008819 name: inferior mediastinum namespace: uberon def: "Anterior, middle and posterior mediastinum." [Wikipedia:Inferior_mediastinum] synonym: "inferior mediastinal part of chest" EXACT [FMA:9828] xref: FMA:9828 xref: SCTID:243950006 is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0003728 ! mediastinum [Term] id: UBERON:0008820 name: anterior mediastinum namespace: uberon def: "The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below." [Wikipedia:Anterior_mediastinum] synonym: "anterior mediastinal part of chest" EXACT [FMA:9838] xref: FMA:9838 xref: SCTID:261048003 xref: ncithesaurus:Anterior_Mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 ! inferior mediastinum [Term] id: UBERON:0008821 name: middle mediastinum namespace: uberon def: "The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents." [Wikipedia:Middle_mediastinum] synonym: "middle mediastinal part of chest" EXACT [FMA:9839] xref: FMA:9839 xref: SCTID:362688008 xref: ncithesaurus:Middle_Mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 ! inferior mediastinum [Term] id: UBERON:0008822 name: posterior mediastinum namespace: uberon def: "The posterior mediastinum is an irregular triangular space running parallel with the vertebral column." [Wikipedia:Posterior_mediastinum] synonym: "posterior mediastinal part of chest" EXACT [FMA:9840] xref: FMA:9840 xref: SCTID:243957009 xref: ncithesaurus:Posterior_Mediastinum is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 ! inferior mediastinum [Term] id: UBERON:0008823 name: vertebrate brain namespace: uberon comment: note that a reasoner should automatically classify all the vertebrate ontology brain classes here is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0000955 ! brain [Term] id: UBERON:0008824 name: duct of epididymis namespace: uberon synonym: "epididymal duct" EXACT [MA:0001735] synonym: "epididymis duct" EXACT [FMA:18297] xref: FMA:18297 xref: MA:0001735 xref: SCTID:279623004 xref: ncithesaurus:Duct_of_the_Epididymis is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! duct of male reproductive system relationship: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0008826 name: pulmonary surfactant namespace: uberon def: "Secretion produced by Type 2 pulmonary alveolar cell." [FMA:62780] synonym: "alveolar surfactant" EXACT [FMA:62780] synonym: "lung surfactant" EXACT [MA:0002534] xref: FMA:62780 xref: MA:0002534 xref: ncithesaurus:Lung_Surfactant is_a: UBERON:0006538 ! respiratory system fluid/secretion [Term] id: UBERON:0008827 name: forestomach namespace: uberon xref: MA:0001606 xref: ncithesaurus:Forestomach is_a: UBERON:0000064 ! organ part is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0008828 name: presphenoid bone namespace: uberon def: "The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [Wikipedia:Ossification_of_sphenoid#Presphenoid, http://www.thefreedictionary.com/Presphenoid+bone] comment: todo - account for developmental change synonym: "presphenoidal bone" EXACT [SCTID:95949009] xref: MA:0001470 xref: SCTID:95949009 is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0008829 name: cerebellum external granule cell layer namespace: uberon def: "transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]. The granule neurons migrate from the exterior layer to form an inner layer known as the internal granule layer. The external granular layer ceases to exist in the mature cerebellum, leaving only granule cells in the internal granule layer" [MP:0000874, Wikipedia:Anatomy_of_the_cerebellum#Development] xref: MA:0000994 xref: NIF_GrossAnatomy:birnlex_797 is_a: UBERON:0002956 ! granular layer of cerebellar cortex [Term] id: UBERON:0008830 name: cerebellum internal granule cell layer namespace: uberon xref: MA:0000995 xref: NIF_GrossAnatomy:birnlex_790 xref: ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum is_a: UBERON:0002956 ! granular layer of cerebellar cortex [Term] id: UBERON:0008831 name: inner spiral sulcus namespace: uberon def: "a concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "internal spiral sulcus" EXACT [MA:0001197] synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html] xref: FMA:77850 xref: MA:0001197 is_a: UBERON:0002277 ! spiral sulcus [Term] id: UBERON:0008832 name: outer spiral sulcus namespace: uberon def: "a concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "external spiral sulcus" EXACT [MA:0001196] synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html] xref: FMA:77851 xref: MA:0001196 is_a: UBERON:0002277 ! spiral sulcus [Term] id: UBERON:0008833 name: great auricular nerve namespace: uberon def: "The great auricular nerve originates from the cervical plexus, composed of branches of spinal nerves C2 and C3. It provides sensory innervation for the skin over parotid gland and mastoid process, and both surfaces of the outer ear." [Wikipedia:Great_auricular_nerve] comment: todo - check MA grouping; in MA this is part_of pinna - should this be a different relationship? synonym: "auricular nerve" EXACT [MA:0001232] synonym: "great auricular" RELATED [Wikipedia:Great_auricular_nerve] synonym: "greater auricular nerve" RELATED [Wikipedia:Great_auricular_nerve] xref: FMA:6872 xref: MA:0001232 xref: SCTID:181110003 xref: Wikipedia:Great_auricular_nerve is_a: UBERON:0002003 ! peripheral nerve relationship: part_of UBERON:0001757 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! pinna [Term] id: UBERON:0008834 name: prostomium namespace: uberon def: "The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth. It sometimes bears antennae and eyes. By feeding, it often functions like a kind of overlip. The shape and composition of prostomium are important for annelid systematics." [Wikipedia:Prostomium] synonym: "acron" RELATED [BTO:0004198] xref: BTO:0004198 is_a: UBERON:0000914 ! organismal segment [Term] id: UBERON:0008835 name: hepatic diverticulum namespace: uberon def: "The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." [Wikipedia:Hepatic_diverticulum, http://www.stembook.org/node/512] synonym: "liver diverticulum" EXACT [XAO:0000101] xref: AAO:0011057 xref: EHDAA2:0000740 xref: EHDAA:1530 xref: XAO:0000101 xref: ncithesaurus:Hepatic_Diverticulum is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009497 ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! digestive tract diverticulum relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006235 ! foregut-midgut junction relationship: develops_from UBERON:0001041 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! foregut [Term] id: UBERON:0008836 name: liver bud namespace: uberon xref: BTO:0001642 is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0008837 name: palmar/plantar part of autopod namespace: uberon is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0008838 name: autopod pad namespace: uberon synonym: "digital pad" RELATED [EMAPA:18489] synonym: "digital pads" RELATED PLURAL [EMAPA:18489] is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001419 ! skin of limb relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0008839 name: palmar pad namespace: uberon comment: note that the EMAPA term refers to the plural synonym: "palmar pads" RELATED PLURAL [EMAPA:18489] xref: EMAPA:18489 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001519 ! skin of hand relationship: part_of UBERON:0001519 ! skin of hand relationship: part_of UBERON:0008878 ! palmar part of hand [Term] id: UBERON:0008840 name: plantar pad namespace: uberon synonym: "plantar pads" RELATED PLURAL [EMAPA:18507] xref: EMAPA:18507 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001513 ! skin of foot relationship: part_of UBERON:0001513 ! skin of foot relationship: part_of UBERON:0008338 ! plantar part of foot [Term] id: UBERON:0008841 name: suspensory ligament namespace: uberon def: "A ligament that supports a body part, especially an organ." [Wikipedia:Suspensory_ligament] is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0008842 name: suspensory ligament of testis namespace: uberon def: "The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis" [Wikipedia:Scrotal_ligament, http://www.medilexicon.com/medicaldictionary.php?t=49790] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0008841 ! suspensory ligament relationship: part_of UBERON:0004876 ! urogenital ridge [Term] id: UBERON:0008843 name: gubernaculum testis namespace: uberon def: "The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies." [BTO:0002813] comment: The upper part of the gubernaculum degenerates; The lower part persists as the gubernaculum testis (\"scrotal ligament\"). This ligament secures the testis to the most inferior portion of the scrotum, tethering it in place and limiting the degree to which the testis can move within the scrotum[WP] synonym: "Hunter's gubernaculum" RELATED [BTO:0002813] xref: BTO:0002813 xref: EMAPA:19089 xref: FMA:20421 xref: SCTID:299983007 is_a: UBERON:0004346 ! gubernaculum [Term] id: UBERON:0008844 name: gubernaculum (female) namespace: uberon comment: The upper part of the gubernaculum, together with the ovarian artery and vein form the suspensory ligament of the ovary,[1] which suspends the ovary from the pelvic wall.; The lower gubernaculum has two vestigial remnants in females, the ovarian ligament and the round ligament of the uterus (ligamentum teres uteri) which respectively serve to support the ovaries and uterus in the pelvis is_a: UBERON:0004346 ! gubernaculum [Term] id: UBERON:0008845 name: nonskeletal ligament namespace: uberon def: "Ligament organ that primarily consists of dense connective tissue aggregated into fasciculi which may be admixed with smooth muscle. Examples: ligament of liver, ovarian ligament." [FMA:25625] xref: FMA:25625 xref: MA:0003004 xref: SCTID:410746001 is_a: UBERON:0000211 ! ligament disjoint_from: UBERON:0008846 ! skeletal ligament [Term] id: UBERON:0008846 name: skeletal ligament namespace: uberon def: "Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament." [FMA:25624] synonym: "articular larua" EXACT [Wikipedia:Ligament] synonym: "articular ligament" EXACT [Wikipedia:Ligament] synonym: "fibrous ligament" RELATED [Wikipedia:Ligament] synonym: "ligament" BROAD [VAO:0000072, ZFA:0001675] synonym: "true ligament" EXACT [Wikipedia:Ligament] xref: AAO:0010444 xref: AEO:0000090 xref: EHDAA2:0003232 xref: EV:0100144 xref: FMA:25624 xref: GAID:118 xref: MA:0003005 xref: MESH:A.02.513 xref: SCTID:410744003 xref: TAO:0001682 xref: VAO:0000072 xref: ZFA:0001675 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png is_a: UBERON:0000211 ! ligament is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0008847 name: ovarian ligament namespace: uberon def: "a fibrous ligament that connects the ovary to the lateral surface of the uterus." [Wikipedia:Ovarian_ligament] comment: The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium synonym: "ligament of ovary" EXACT [FMA:55422] synonym: "ligamentum ovarii proprium" EXACT [FMA:TA] synonym: "proper ovarian ligament" EXACT [FMA:55422] xref: FMA:55422 xref: SCTID:279915004 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0008848 name: cranial suspensory ligament namespace: uberon def: "Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity." [] comment: todo - check - add cranial ovarian susp ligaments xref: EMAPA:30068 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008841 ! suspensory ligament relationship: part_of UBERON:0003135 ! male reproductive organ [Term] id: UBERON:0008851 name: ectoplacental cavity namespace: uberon def: "closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals" [MP:0011207, http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] xref: EMAPA:16080 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0008852 name: visceral yolk sac namespace: uberon def: "extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells" [MP:0001718] comment: TODO - check synonym: "secondary yolk sac" EXACT [MP:0001718] synonym: "umbilical vesicle" EXACT [MP:0001718] synonym: "vitelline sac" EXACT [MP:0001718] synonym: "yolk sac" BROAD [MP:0001718] is_a: UBERON:0001040 ! yolk sac [Term] id: UBERON:0008853 name: parietal yolk sac namespace: uberon def: "tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity." [MP:0011203, PMID:1150659, PMID:21123814] synonym: "primary yolk sac" EXACT [MP:0011203] xref: EHDAA2:0003237 is_a: UBERON:0001040 ! yolk sac [Term] id: UBERON:0008854 name: root of molar tooth namespace: uberon def: "the part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165] synonym: "molar root" EXACT [FMA:85302] synonym: "molar tooth root" EXACT [FMA:85302] xref: FMA:85302 is_a: UBERON:0003677 ! tooth root [Term] id: UBERON:0008855 name: placenta metrial gland namespace: uberon def: "group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species." [MP:0010777] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: MA:0001723 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002530 ! gland is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0002450 ! decidua [Term] id: UBERON:0008856 name: stomach muscularis externa namespace: uberon def: "the smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines" [MP:0010779] comment: todo - logical def synonym: "gastric muscularis" EXACT [FMA:14909] synonym: "muscularis externa of stomach" EXACT [FMA:14909] synonym: "tunica muscularis (gaster)" EXACT [FMA:14909] xref: FMA:14909 xref: SCTID:362132003 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004222 ! stomach smooth muscle is_a: UBERON:0006660 ! muscle layer relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0008857 name: stomach smooth muscle circular layer namespace: uberon def: "the middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum" [MP:0010780] comment: todo - check synonym: "circular layer of gastric muscularis" EXACT [FMA:14911] synonym: "stratum circulare (tunica muscularis)(gaster)" EXACT [FMA:14911] xref: FMA:14911 xref: MA:0001628 xref: SCTID:2746007 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004222 ! stomach smooth muscle relationship: part_of UBERON:0008856 ! stomach muscularis externa [Term] id: UBERON:0008858 name: pyloric canal namespace: uberon def: "the short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter" [MP:0010791, Wikipedia:Pyloric_canal] synonym: "canalis pyloricus" EXACT [Wikipedia:Pyloric_canal] xref: FMA:14580 xref: SCTID:245417002 is_a: UBERON:0009870 ! zone of stomach relationship: part_of UBERON:0001166 ! pylorus [Term] id: UBERON:0008859 name: cardiac gastric gland namespace: uberon def: "the gastric glands in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it" [MP:0010795] comment: Consistency note: Kardong places this in the glandular epithelium, FMA in the mucosa subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "gardiac gland" EXACT [ISBN10:0073040584] synonym: "gastric gland of cardia" EXACT [FMA:14920] synonym: "glandula cardiaca (gaster)" EXACT [FMA:14920] xref: FMA:14920 xref: SCTID:8894005 is_a: UBERON:0000325 ! gastric gland relationship: part_of UBERON:0004996 ! mucosa of cardia of stomach [Term] id: UBERON:0008860 name: intermediate gastric gland namespace: uberon def: "any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach" [MP:0010796] comment: check me is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0010038 ! fundic gastric gland relationship: part_of UBERON:0001160 ! fundus of stomach [Term] id: UBERON:0008861 name: pyloric gastric gland namespace: uberon def: "the gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [MP:0010797, Wikipedia:Pyloric_gland] comment: Editors note: check relationship to pylorus vs antrum synonym: "pyloric antrum gland" EXACT [OBOL:automatic] synonym: "pyloric gland" EXACT [FMA:14922] xref: FMA:14922 xref: SCTID:70710007 xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png xref: ncithesaurus:Pyloric_Gland is_a: UBERON:0000325 ! gastric gland relationship: part_of UBERON:0004998 ! mucosa of pylorus [Term] id: UBERON:0008862 name: stomach smooth muscle inner oblique layer namespace: uberon def: "the innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food" [MP:0010804] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0008856 ! stomach muscularis externa [Term] id: UBERON:0008863 name: stomach smooth muscle outer longitudinal layer namespace: uberon def: "the most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum" [MP:0010805] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0008856 ! stomach muscularis externa [Term] id: UBERON:0008866 name: enamel knot namespace: uberon def: "a transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps" [MP:0010864] is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003843 ! dental epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0008867 name: trabecular network of bone namespace: uberon def: "the network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force" [MP:0010867] comment: Editor note: consider revision - we have 3 classes, the tissue itself, the network, and the spaces. synonym: "bone trabecula" RELATED [MP:0010867] synonym: "bone trabeculae" RELATED [MP:0010867] xref: MP:0010867 xref: ncithesaurus:Bone_Trabeculae is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002483 ! trabecular bone tissue [Term] id: UBERON:0008870 name: pulmonary alveolar parenchyma namespace: uberon def: "the distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages" [MP:0010901] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0008946 ! lung parenchyma [Term] id: UBERON:0008872 name: pulmonary alveolus wall namespace: uberon def: "." [MP:0010903] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008873 name: alveolar pore namespace: uberon def: "the openings in the alveolar septum that permit air flow between adjacent alveoli" [MP:0010904] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008874 name: pulmonary acinus namespace: uberon def: "the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs] synonym: "primary pulmonary lobule" EXACT [FMA:7313] xref: FMA:7313 xref: SCTID:361365004 xref: ncithesaurus:Pulmonary_Acinus is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0008875 name: hypodermis fat layer namespace: uberon def: "the superficial portion of the subcutaneous tissue which is specialized for fat storage" [MP:0011156] is_a: UBERON:0002190 ! subcutaneous adipose tissue relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0008876 name: hypodermis muscle layer namespace: uberon def: "the skeletal muscle layer in the superficial fascia" [MP:0011157] is_a: UBERON:0001134 ! skeletal muscle tissue relationship: part_of UBERON:0002190 ! subcutaneous adipose tissue [Term] id: UBERON:0008877 name: epidermal-dermal junction namespace: uberon def: "the multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction" [MP:0011159] synonym: "dermal-epidermal junction" EXACT [FMA:70963] xref: FMA:70963 is_a: UBERON:0005769 ! basement membrane relationship: part_of UBERON:0000014 ! zone of skin [Term] id: UBERON:0008878 name: palmar part of hand namespace: uberon synonym: "front of hand" EXACT [FMA:24920] synonym: "palm" EXACT [FMA:24920] synonym: "palm of hand" EXACT [FMA:24920] synonym: "palmar region" EXACT [FMA:24920] synonym: "regio palmaris" EXACT [FMA:TA] xref: FMA:24920 xref: ncithesaurus:Palmar_Region is_a: UBERON:0005451 ! segment of hand is_a: UBERON:0008837 ! palmar/plantar part of autopod [Term] id: UBERON:0008879 name: ligament of pinna namespace: uberon comment: subclasses (anterior, superior, posterior) can be added on request synonym: "auricular ligament" EXACT [MA:0001228] synonym: "ligament of auricle" EXACT [FMA:61035] synonym: "pinna ligament" EXACT [FMA:61035] xref: FMA:61035 xref: MA:0001228 xref: SCTID:362548009 is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0008880 name: annelid pygidium namespace: uberon def: "Rearmost segment of annelid worms." [Wikipedia:Annelid#Segmentation] is_a: UBERON:0000914 ! organismal segment [Term] id: UBERON:0008881 name: rostral migratory stream namespace: uberon def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb[NIF]. In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)[BTO]. the transient structure formed by neurons migrating from the subventricular zone into the olfactory bulbs[MP] he rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP]" [] synonym: "RMS" RELATED [BTO:0003412] synonym: "rostral migratory pathway" RELATED [Wikipedia:Rostral_migratory_stream] xref: BTO:0003412 xref: NIF_GrossAnatomy:birnlex_1702 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0001870 ! frontal cortex relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0008882 name: spinal cord commissure namespace: uberon def: "The nerve fiber tracts that span the midline of the spinal cord" [MP:0009694] is_a: UBERON:0001020 ! commissure [Term] id: UBERON:0008883 name: osteoid namespace: uberon def: "unmineralized, organic portion of the bone matrix that forms prior to the maturation of bone tissue. Osteoblasts begin the process of forming bone tissue by secreting the osteoid as several specific proteins. When the osteoid becomes mineralized, it and the adjacent bone cells have developed into new bone tissue" [Wikipedia:Osteoid] comment: request from GO? synonym: "prebone tissue" EXACT [FMA:66830] xref: FMA:66830 xref: SCTID:39365008 xref: XAO:0004035 xref: ncithesaurus:Osteoid is_a: UBERON:0004755 ! skeletal tissue is_a: UBERON:0000476 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! acellular anatomical structure relationship: part_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0008884 name: left putamen namespace: uberon xref: FMA:72829 is_a: UBERON:0001874 ! putamen [Term] id: UBERON:0008885 name: right putamen namespace: uberon xref: FMA:72828 is_a: UBERON:0001874 ! putamen [Term] id: UBERON:0008886 name: pulmonary vascular system namespace: uberon def: "Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation] synonym: "pulmonary circulatory system" EXACT [FMA:45621] xref: FMA:45621 is_a: UBERON:0007798 ! vascular system relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0008887 name: rectal venous plexus namespace: uberon def: "The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus." [Wikipedia:Rectal_venous_plexus] synonym: "haemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] synonym: "hemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] xref: FMA:18933 xref: ncithesaurus:Hemorrhoidal_Plexus is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0008888 name: vesical venous plexus namespace: uberon def: "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins." [Wikipedia:Vesical_venous_plexus] xref: FMA:18934 xref: SCTID:31510008 is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0008889 name: uterine venous plexus namespace: uberon def: "The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein." [Wikipedia:Uterine_venous_plexus] synonym: "uterine plexus" RELATED [Wikipedia:Uterine_venous_plexus] xref: FMA:29712 xref: SCTID:294553007 is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0008891 name: external gill namespace: uberon def: "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes." [BTO:0004689] xref: AAO:0010174 xref: BTO:0004689 xref: XAO:0000120 is_a: UBERON:0002535 ! gill is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0008892 name: internal gill namespace: uberon xref: AAO:0010176 is_a: UBERON:0002535 ! gill [Term] id: UBERON:0008894 name: gill precursor namespace: uberon def: "A primordium or bud that develops into a gill." [] synonym: "gill primordium" EXACT [XAO:0000448] synonym: "internal gill bud" EXACT [ZFA:0001107] xref: XAO:0000448 xref: ZFA:0001107 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0001042 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! chordate pharynx [Term] id: UBERON:0008895 name: pharyngeal arch skeleton namespace: uberon comment: merge with viscerocranium? synonym: "branchial arch skeleton" RELATED [] synonym: "gill arch skeleton" RELATED [] is_a: UBERON:0000075 ! subdivision of skeletal system [Term] id: UBERON:0008896 name: pharyngeal arch 3-7 namespace: uberon synonym: "branchial arch" EXACT [ZFA:0001613] synonym: "branchial arches" EXACT PLURAL [ZFA:0001613] synonym: "branchial bar" EXACT [ZFA:0001613] synonym: "branchial bars" EXACT PLURAL [ZFA:0001613] synonym: "gill arch" EXACT [ZFA:0001613] synonym: "gill arches 1-5" EXACT [ZFA:0001613] synonym: "visceral arches 3-7" EXACT [ZFA:0001613] xref: AAO:0010362 xref: SCTID:308766004 xref: TAO:0001597 xref: XAO:0000099 xref: ZFA:0001613 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002539 ! pharyngeal arch is_a: UBERON:0004185 ! endodermal gut relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0002535 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! gill [Term] id: UBERON:0008897 name: fin namespace: uberon def: "An external membranous process of an aquatic animal as a fish used in propelling or guiding the body." [BTO:0004649, Wikipedia:Fin] xref: AAO:0010374 xref: BTO:0004649 xref: EFO:0000875 xref: MAT:0000087 xref: MESH:A13.077 xref: MIAA:0000087 xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA xref: SCTID:73003005 xref: TAO:0000108 xref: XAO:0000002 xref: ZFA:0000108 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ectoderm [Term] id: UBERON:0008902 name: lateral recess of third vetricle namespace: uberon def: "Lateral protrusion of the third ventricle." [ZFIN:curator] synonym: "lateral recess" BROAD PLURAL [ZFA:0000231] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] xref: TAO:0000231 xref: ZFA:0000231 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0008904 name: neuromast namespace: uberon def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "lateral line neuromast" EXACT [ZFA:0000243] synonym: "lateral line organ" EXACT [ZFA:0000243] synonym: "neuromasts" EXACT PLURAL [ZFA:0000243] xref: AAO:0001004 xref: TAO:0000243 xref: ZFA:0000243 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0010202 ! lateral line [Term] id: UBERON:0008906 name: lateral line nerve namespace: uberon def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] synonym: "lateral line nerves" EXACT PLURAL [ZFA:0001479] xref: AAO:0010077 xref: TAO:0001479 xref: ZFA:0001479 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0008907 name: dermal bone namespace: uberon def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VAO:0000130, VAO:curator] comment: todo xref: AAO:0010769 xref: VAO:0000130 xref: XAO:0004015 xref: ZFA:0001590 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0007842 ! membrane bone [Term] id: UBERON:0008909 name: perichordal bone tissue namespace: uberon def: "Replacement bone that forms within the connective tissue surrounding the notochord." [ZFIN:curator] comment: renamed to perichordal bone tissue synonym: "perichordal bone" RELATED [ZFA:0001629] synonym: "perichordal bones" EXACT PLURAL [ZFA:0001629] xref: AAO:0010777 xref: TAO:0001639 xref: ZFA:0001629 is_a: UBERON:0004763 ! endochondral bone tissue [Term] id: UBERON:0008911 name: chondral bone tissue namespace: uberon def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [zfin:curator] comment: renamed to perichordal bone tissue synonym: "chondral bone" RELATED [ZFA:0001693] xref: AAO:0010774 xref: ZFA:0001693 is_a: UBERON:0004763 ! endochondral bone tissue [Term] id: UBERON:0008913 name: perichondral bone tissue namespace: uberon def: "Replacement bone that forms within the connective tissue surrounding cartilage." [ZFIN:curator] synonym: "perichondral bone" RELATED [ZFA:0001630] synonym: "perichondral bones" EXACT PLURAL [ZFA:0001630] xref: AAO:0010779 xref: TAO:0001638 xref: ZFA:0001630 is_a: UBERON:0008911 ! chondral bone tissue [Term] id: UBERON:0008915 name: pore namespace: uberon def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:curator] xref: AAO:0010441 xref: TAO:0001791 xref: ZFA:0005449 xref: ncithesaurus:Pore is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0008917 name: ampullary organ namespace: uberon def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "ampullary electroreceptor organ" EXACT [TAO:0002104] xref: AAO:0001006 xref: TAO:0002104 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0008918 name: ampulla of Lorenzini namespace: uberon def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores... Each ampulla consists of a jelly-filled canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [Wikipedia:Ampullae_of_Lorenzini] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "ampullae of Lorenzini" EXACT PLURAL [Wikipedia:Ampullae_of_Lorenzini] xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Electroreceptors_in_a_sharks_head.svg is_a: UBERON:0003103 ! compound organ is_a: UBERON:0008917 ! ampullary organ relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0008919 name: mesenchyme from somatopleure namespace: uberon is_obsolete: true xref: EHDAA2:0001120 [Term] id: UBERON:0008920 name: mesenchyme from splanchnopleure namespace: uberon is_obsolete: true xref: EHDAA2:0001122 [Term] id: UBERON:0008921 name: substratum of layer of retina namespace: uberon def: "." [UBERON:CL_meeting_20110725, http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0008922 name: sublaminar layer S1 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000113 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 [Term] id: UBERON:0008923 name: sublaminar layer S2 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000114 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008924 name: sublaminar layer S3 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000115 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008925 name: sublaminar layer S4 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000116 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008926 name: sublaminar layer S5 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm] xref: CP:0000117 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008927 name: sublaminar layers S1 or S2 namespace: uberon def: "One of sublaminar layers S1 or S2." [GOC:tfm] xref: CP:0000118 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 [Term] id: UBERON:0008928 name: sublaminar layers S2 or S3 namespace: uberon def: "One of sublaminar layers S2 or S3." [GOC:tfm] xref: CP:0000119 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 [Term] id: UBERON:0008929 name: sublaminar layers S4 or S5 namespace: uberon def: "One of sublaminar layers S4 or S5." [GOC:tfm] xref: CP:0000120 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 [Term] id: UBERON:0008930 name: somatosensory cortex namespace: uberon def: "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus." [MESH:A.08.186.211.730.885.213.670.675] synonym: "somesthetic area" RELATED [BTO:0004353] xref: BTO:0004353 xref: GAID:681 xref: MESH:A.08.186.211.730.885.213.670.675 xref: SCTID:279252006 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0002581 ! postcentral gyrus [Term] id: UBERON:0008933 name: primary somatosensory cortex namespace: uberon comment: _:comment___:_:@___:_:source__MA___:.__ABA disjointness - Removed relationship: part_of UBERON:0001870 xref: MA:0000908 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001870 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! frontal cortex [Term] id: UBERON:0008934 name: secondary somatosensory cortex namespace: uberon xref: MA:0000918 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0008935 name: albumen gland namespace: uberon def: "The posterior oviduct opens into the large white albumen gland which adds a layer of albumen to the zygote before it reaches the egg capsule gland." [BTO:0000054] xref: BTO:0000054 is_a: UBERON:0005398 ! female reproductive gland [Term] id: UBERON:0008936 name: gastropod genital pore namespace: uberon def: "A small opening on the side of the head in some gastropods through which the penis is protruded." [BTO:0004684] synonym: "genital orifice" RELATED [BTO:0004684] synonym: "genital pore" EXACT [BTO:0004684] xref: BTO:0004684 is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0008937 name: visceral hump namespace: uberon def: "Mollusks have three distinct divisions of their body. The head contains the sensory equipment (eyes, antennae, etc) and the primitive brain. The visceral hump, which is the main body, contains most of the organs, including a complete digestive and excretory tract as well as the reproductive organs. The visceral hump also includes the two external flaps of tissue, which are known as the mantle." [BTO:0001448, http://www.britannica.com/EBchecked/topic/630349/visceral-hump] synonym: "visceral sac" RELATED [BTO:0001448] xref: BTO:0001448 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008939 name: pedal ganglion namespace: uberon def: "The pedal ganglia mainly are necessary for coordination of locomotion of a snail." [BTO:0001012] xref: BTO:0001012 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0008937 ! visceral hump [Term] id: UBERON:0008940 name: parietal ganglion namespace: uberon def: "The lateral ganglia of a snail nervous system are called parietal ganglia. They innerve pallial cavity, gills and skin." [BTO:0001841] xref: BTO:0001841 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0008937 ! visceral hump [Term] id: UBERON:0008941 name: pleural ganglion namespace: uberon def: "The pallial cavity's nerve knots are called pleural ganglia. They innerve primarily the mantle or a snail." [BTO:0001842] xref: BTO:0001842 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0008937 ! visceral hump [Term] id: UBERON:0008942 name: gastropod cerebral ganglion namespace: uberon def: "The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail." [BTO:0001843] synonym: "cerebral ganglion" EXACT [BTO:0001843] xref: BTO:0001843 is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0008943 name: headfoot namespace: uberon def: "The head-foot is the part you see most easily in slugs and snails. It is mostly a muscular organ covered in cilia and rich in mucous cells, which the mollusc uses to move around, it normally tapers to a tail at one end and has a head incorporated in the front. The head includes a mouth, eyes and tentacles, the last two may be much reduced or even absent. In those species with shells the head-foot can be drawn into the shell." [BTO:0003509] xref: BTO:0003509 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008944 name: albumen namespace: uberon def: "Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo." [GO:0097099, Wikipedia:Albumen, https://sourceforge.net/tracker/index.php?func=detail&aid=3357613&group_id=36855&atid=440764] synonym: "egg white" EXACT [GO:0097099] xref: GO:0097099 xref: ncithesaurus:Egg_White is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0007379 ! egg [Term] id: UBERON:0008945 name: extraembryonic endoderm namespace: uberon def: "." [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm] xref: EHDAA2:0000473 xref: EHDAA:105 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue [Term] id: UBERON:0008946 name: lung parenchyma namespace: uberon synonym: "respiratory portion of lung" EXACT [FMA:27360] xref: FMA:27360 xref: SCTID:201712001 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0008947 name: respiratory primordium namespace: uberon xref: EHDAA2:0004069 xref: ncithesaurus:Respiratory_Primordium is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0003258 ! endoderm of foregut [Term] id: UBERON:0008948 name: upper lobe of lung namespace: uberon synonym: "cranial lobe of lung" EXACT [UBERON:cjm] synonym: "lobus superior" EXACT [FMA:7334] synonym: "lobus superior pulmonis" EXACT [FMA:TA] synonym: "superior lobe of lung" EXACT [FMA:7334] xref: FMA:7334 xref: SCTID:303548008 xref: ncithesaurus:Lung_Upper_Lobe is_a: UBERON:0000101 ! lobe of lung disjoint_from: UBERON:0008955 ! middle lobe/projection of lung [Term] id: UBERON:0008949 name: lower lobe of lung namespace: uberon synonym: "inferior lobe of lung" EXACT [UBERON:cjm] synonym: "lobus inferior" EXACT [UBERON:cjm] synonym: "lobus inferior pulmonis" EXACT [UBERON:cjm] xref: FMA:7335 xref: SCTID:303549000 xref: ncithesaurus:Lung_Lower_Lobe is_a: UBERON:0000101 ! lobe of lung disjoint_from: UBERON:0008955 ! middle lobe/projection of lung [Term] id: UBERON:0008950 name: azygous lobe of lung namespace: uberon def: "The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure." [http://www.e-radiography.net/radpath/a/azygoslobe.htm, http://www.gpnotebook.co.uk] is_a: UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0008951 name: left lung lobe namespace: uberon synonym: "lobe of left lung" EXACT [] synonym: "lobe of the left lung" EXACT [] xref: EHDAA:2981 xref: SCTID:272655003 xref: ncithesaurus:Lobe_of_the_Left_Lung is_a: UBERON:0000101 ! lobe of lung [Term] id: UBERON:0008952 name: upper lobe of left lung namespace: uberon def: "The lobe of the left lung that is closest to the head." [UBERON:cjm] synonym: "left lung cranial lobe" EXACT [EHDAA2:0000953] synonym: "left upper lobe" EXACT [FMA:7370] synonym: "left upper lobe of lung" EXACT [FMA:7370] synonym: "lobus superior pulmonis sinistri" EXACT [FMA:TA] synonym: "superior lobe of left lung" EXACT [FMA:7370] xref: EHDAA2:0000953 xref: EHDAA:4957 xref: FMA:7370 xref: SCTID:361984006 xref: ncithesaurus:Upper_Lobe_of_the_Left_Lung is_a: UBERON:0008948 ! upper lobe of lung is_a: UBERON:0008951 ! left lung lobe [Term] id: UBERON:0008953 name: lower lobe of left lung namespace: uberon synonym: "inferior lobe of left lung" EXACT [FMA:7371] synonym: "left lower lobe" EXACT [FMA:7371] synonym: "left lower lobe of lung" EXACT [FMA:7371] synonym: "left lung caudal lobe" EXACT [EHDAA2:0000945] synonym: "lobus inferior (pulmo sinister)" EXACT [FMA:7371] synonym: "lobus inferior pulmonis sinistri" EXACT [FMA:TA] xref: EHDAA2:0000945 xref: EHDAA:4949 xref: FMA:7371 xref: SCTID:361989001 xref: ncithesaurus:Lower_Lobe_of_the_Left_Lung is_a: UBERON:0008949 ! lower lobe of lung is_a: UBERON:0008951 ! left lung lobe [Term] id: UBERON:0008954 name: lingula of left lung namespace: uberon comment: the lingula of the left lung in humans is not normally considered a true lobe synonym: "left pulmonary lingula" EXACT [FMA:7433] synonym: "lingula of lung" EXACT [FMA:7433] synonym: "middle lobe of left lung" EXACT [galen:MiddleLobeOfLeftLung] xref: FMA:7433 xref: SCTID:184916009 xref: galen:MiddleLobeOfLeftLung xref: ncithesaurus:Lingula is_a: UBERON:0008951 ! left lung lobe is_a: UBERON:0008955 ! middle lobe/projection of lung [Term] id: UBERON:0008955 name: middle lobe/projection of lung namespace: uberon synonym: "middle lobe of lung" EXACT [galen:MiddleLobeOfLung] xref: SCTID:362900002 xref: galen:MiddleLobeOfLung is_a: UBERON:0000101 ! lobe of lung [Term] id: UBERON:0008956 name: involucrum namespace: uberon def: "a layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum." [Wikipedia:Involucrum] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0008957 name: sequestrum namespace: uberon def: "a piece of dead bone that has become separated during the process of necrosis from normal/sound bone.." [Wikipedia:Sequestrum] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0008958 name: cetacean involucrum namespace: uberon is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0008959 name: auditory bulla namespace: uberon def: "a hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla] comment: In extant primates, the structure is found in tarsiers, lemurs, and lorises synonym: "tympanic bulla" RELATED [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0008960 name: melon organ namespace: uberon def: "The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation" [Wikipedia:Melon_(whale)] is_a: UBERON:0000062 ! organ is_a: UBERON:0010053 ! echolocation organ [Term] id: UBERON:0008961 name: parabronchus namespace: uberon def: "tertiary bronchi in the avian lung. The domestic fowl has some 500 parabronchi each 1 to 2 mm diameter with the wall of each containing the complex respiratory epithelium." [http://medical-dictionary.thefreedictionary.com/parabronchi] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "parabronchia" RELATED PLURAL [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0008962 name: forelimb bone namespace: uberon synonym: "wing bone" NARROW SENSU [Geisha:syn] xref: MA:0000612 xref: SCTID:371195002 is_a: UBERON:0002428 ! limb bone relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0008963 name: hoof namespace: uberon def: "The tip of a toe of an ungulate mammal, strengthened by a thick horny (keratin) covering. The hoof consists of a hard or rubbery sole, and a hard wall formed by a thick nail rolled around the tip of the toe. The weight of the animal is normally borne by both the sole and the edge of the hoof wall. Hooves grow continuously, and are constantly worn down by use." [Wikipedia:Hoof] comment: The hoof is the integument of the foot. Like skin, the integument of the foot has three layers, namely the epidermis, dermis, and SC tissue. xref: BTO:0003994 xref: SCTID:410026002 is_a: UBERON:0009564 ! distal limb integumentary appendage [Term] id: UBERON:0008964 name: abdominal ganglion of visceral hump namespace: uberon def: "The visceral sacs nerve knot is called visceral ganglion. In contrary to the mostly paired other ganglia this nerve knot is unpaired. The visceral ganglion innerves the pallial organs as well as the inner organs." [BTO:0000022] synonym: "abdominal ganglion" RELATED [BTO:0000022] synonym: "visceral ganglion" RELATED [BTO:0000022] xref: BTO:0000022 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0008937 ! visceral hump disjoint_from: UBERON:0009758 ! abdominal ganglion [Term] id: UBERON:0008967 name: centrum semiovale namespace: uberon def: "The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers." [Wikipedia:Semioval_center] comment: note that WP suggests a merge with cerebral white matter synonym: "medullary center" EXACT [FMA:61939] synonym: "semioval center" RELATED [BTO:0000229] synonym: "white matter of cerebrum" EXACT [FMA:61939] xref: BTO:0000229 xref: FMA:61939 xref: SCTID:369198002 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0008969 name: dental follicle namespace: uberon def: "The structure within the developing alveolar bone of the jaws enclosing the tooth germ." [BTO:0000337] synonym: "tooth follicle" RELATED [BTO:0000337] xref: BTO:0000337 xref: SCTID:110975002 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005087 ! tooth placode relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0008971 name: left colon namespace: uberon def: "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." [BTO:0000646] synonym: "distal colon" RELATED [BTO:0000646] xref: BTO:0000646 xref: SCTID:362164005 xref: ncithesaurus:Left_Colon is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:0008972 name: right colon namespace: uberon def: "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." [BTO:0000649] synonym: "proximal colon" RELATED [BTO:0000649] xref: BTO:0000649 xref: SCTID:362161002 xref: ncithesaurus:Right_Colon is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:0008974 name: apocrine gland namespace: uberon def: "A gland whose discharged secretion contains part of the secreting cells." [BTO:0001162] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: BTO:0001162 xref: SCTID:361698000 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0008975 name: shell gland namespace: uberon def: "Any of various structures that secrete covering material for eggs or egg masses" [http://www.answers.com/topic/nidamental-gland] subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "nidamental gland" RELATED [] xref: BTO:0001241 xref: SCTID:14478002 is_a: UBERON:0005398 ! female reproductive gland [Term] id: UBERON:0008976 name: venom gland namespace: uberon def: "The venom gland of snakes is in actual fact a modified salivary gland and is linked to the groove in the fangs by a duct." [BTO:0001440] comment: Editors note: todo - check the developmental relationship. Taxon notes: currently refers to venom gland of the snake, but could in future be generalized subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "poison gland" RELATED [BTO:0001440] xref: BTO:0001440 xref: SCTID:362181001 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002365 ! exocrine gland [Term] id: UBERON:0008977 name: pes anserinus namespace: uberon def: "The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia." [Wikipedia:Pes_anserinus_%28leg%29] synonym: "pes anserine" RELATED [Wikipedia:Pes_anserinus_%28leg%29] xref: BTO:0001507 xref: SCTID:360767004 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000043 ! tendon [Term] id: UBERON:0008978 name: anal sac namespace: uberon def: "In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands." [BTO:0001681] xref: BTO:0001681 xref: SCTID:362169000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001245 ! anus [Term] id: UBERON:0008979 name: carcass namespace: uberon def: "A dead body." [BTO:0001965] synonym: "cadaver" RELATED [BTO:0001965] synonym: "dead body" RELATED [BTO:0001965] xref: BTO:0001965 xref: SCTID:127853004 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0008981 name: rhinencephalon namespace: uberon def: "The olfactory region of the brain, located in the cerebrum." [BTO:0002785] synonym: "olfactory brain" RELATED [BTO:0002785] xref: BTO:0002785 xref: SCTID:361576004 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0008982 name: fascia namespace: uberon def: "A sheet of connective tissue covering or binding together body structures as muscles." [BTO:0002930] xref: BTO:0002930 xref: FMA:30318 xref: SCTID:181772008 xref: ncithesaurus:Fascia is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0008987 name: renal parenchyma namespace: uberon def: "The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604] synonym: "kidney parenchyma" RELATED [BTO:0003604] xref: BTO:0003604 xref: FMA:15574 xref: SCTID:29704000 is_a: UBERON:0000353 ! parenchyma is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0008989 name: esophageal gland namespace: uberon def: "One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed." [BTO:0003634] xref: BTO:0003634 xref: FMA:9404 xref: SCTID:322749003 xref: ncithesaurus:Esophageal_Gland is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0008992 name: chorion frondosum namespace: uberon def: "The part of the chorion where the villi persist, forming the foetal part of the placenta." [BTO:0003677] synonym: "shaggy chorion" RELATED [BTO:0003677] xref: BTO:0003677 xref: SCTID:37333001 is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0008993 name: habenular nucleus namespace: uberon def: "The gray matter of the habenula, composed of a small-celled medial and a larger-celled lateral habenular nucleus; both nuclei receive fibres from basal forebrain regions (septum, basal nucleus, lateral preoptic nucleus); the lateral habenular nucleus receives an additional projection from the medial segment of the globus pallidus. Both nuclei project by way of the retroflex fasciculus to the interpeduncular nucleus and a medial zone of the midbrain tegmentum." [BTO:0003685] synonym: "ganglion habenulae" RELATED [BTO:0003685] synonym: "nucleus habenulae" RELATED [BTO:0003685] xref: BTO:0003685 xref: EHDAA2:0004710 xref: SCTID:279303009 is_a: UBERON:0000445 ! habenular trigone relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0008994 name: glandular stomach namespace: uberon def: "Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones." [BTO:0003791] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "stomachus glandularis" RELATED [BTO:0003791] xref: BTO:0003791 xref: SCTID:27633001 xref: ncithesaurus:Glandular_Stomach is_a: UBERON:0000945 ! stomach [Term] id: UBERON:0008995 name: cerebellar nucleus namespace: uberon def: "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii." [BTO:0003835] xref: BTO:0003835 xref: SCTID:279220006 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0008996 name: nucleus dentatus namespace: uberon xref: BTO:0003836 xref: SCTID:279221005 is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0008997 name: nucleus fastigii namespace: uberon xref: BTO:0003839 xref: SCTID:279224002 is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0008998 name: cerebrovascular system namespace: uberon def: "System pertaining to blood vessels in the brain." [BTO:0003840] xref: BTO:0003840 xref: SCTID:362029003 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0007798 ! vascular system [Term] id: UBERON:0008999 name: hoof lamina namespace: uberon def: "The tissues which attach the third phalanx to the hoof wall." [BTO:0003997] synonym: "hoof laminae" RELATED [BTO:0003997] xref: BTO:0003997 xref: SCTID:370743008 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0008963 ! hoof [Term] id: UBERON:0009000 name: ischial spine namespace: uberon def: "A bony process projecting backward and medialward from the posterior border of the ischium." [BTO:0004149] xref: BTO:0004149 xref: FMA:17028 xref: SCTID:18074002 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0009002 name: placental membrane namespace: uberon def: "The membrane separating the fetal from the maternal blood in the placenta; sometimes inappropriately called the placental barrier." [BTO:0004196] synonym: "placental barrier" RELATED [BTO:0004196] xref: BTO:0004196 xref: SCTID:256591004 xref: ncithesaurus:Placental_Membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0009005 name: femorotibial joint namespace: uberon def: "One of the two primary bendings of a typical leg, pertains to the femur and the tibia." [BTO:0004396] xref: BTO:0004396 xref: SCTID:182203004 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004905 ! joint relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0009006 name: deep inguinal lymph node namespace: uberon def: "One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes." [BTO:0004548] synonym: "nodi lymphatici inguinales profundi" RELATED [BTO:0004548] xref: BTO:0004548 xref: FMA:44225 xref: SCTID:65266007 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0009007 name: superficial inguinal lymph node namespace: uberon def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549] xref: BTO:0004549 xref: FMA:5036 xref: SCTID:113340006 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0009009 name: carotid sinus nerve namespace: uberon def: "Carotid branch of glossopharyngeal nerve." [BTO:0004978] xref: BTO:0004978 xref: FMA:53488 xref: SCTID:50624003 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001649 ! glossopharyngeal nerve [Term] id: UBERON:0009010 name: periurethral tissue namespace: uberon def: "Tissue around the urethra." [BTO:0005081] xref: BTO:0005081 xref: SCTID:256880003 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000479 ! tissue is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0009013 name: white fibrocartilage namespace: uberon xref: MA:0000486 xref: SCTID:3008003 is_a: UBERON:0001995 ! fibrocartilage [Term] id: UBERON:0009014 name: lower back skin namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: MA:0000504 xref: SCTID:286601005 is_a: UBERON:0001068 ! skin of back is_a: UBERON:0003836 ! abdominal segment skin [Term] id: UBERON:0009015 name: upper back skin namespace: uberon xref: MA:0000510 xref: SCTID:304890003 is_a: UBERON:0001068 ! skin of back is_a: UBERON:0001418 ! skin of thorax [Term] id: UBERON:0009016 name: ciliary stroma namespace: uberon xref: MA:0001239 xref: SCTID:280868008 is_a: UBERON:0003566 ! head connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 ! ciliary body [Term] id: UBERON:0009020 name: left uterine horn namespace: uberon xref: MA:0001727 xref: SCTID:245482004 is_a: UBERON:0002247 ! uterine horn [Term] id: UBERON:0009022 name: right uterine horn namespace: uberon xref: MA:0001728 xref: SCTID:245481006 is_a: UBERON:0002247 ! uterine horn [Term] id: UBERON:0009024 name: adrenal gland X zone namespace: uberon def: "A wide juxta-medullary layer of cells in the adrenal glands of young mature virgin female mice." [http://www.jstor.org/pss/82802] synonym: "juvenile zone" RELATED [MA:0001888] xref: MA:0001888 xref: SCTID:24306004 is_a: UBERON:0009753 ! adrenal gland cortex zone relationship: part_of UBERON:0001235 ! adrenal cortex relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0009025 name: gastroepiploic artery namespace: uberon def: "Abdominal artery that follows the curvature of the stomach. The right gasteroepiploic artery is frequently used in coronary artery bypass grafting, myocardial revascularization, and other vascular reconstruction." [MESH:A.07.231.114.379] subset: grouping_class ! Subset consisting of classes creating for grouping purposes xref: MA:0001962 xref: MESH:A.07.231.114.379 xref: SCTID:261401008 xref: ncithesaurus:Gastroepiploic_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009026 name: iliac circumflex artery namespace: uberon xref: MA:0001975 xref: SCTID:244327004 xref: ncithesaurus:Circumflex_Iliac_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009027 name: vesical artery namespace: uberon xref: MA:0002078 xref: SCTID:244307000 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009029 name: pudendal vein namespace: uberon xref: MA:0002202 xref: SCTID:395225000 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0009030 name: left pulmonary vein namespace: uberon xref: MA:0002207 xref: SCTID:304057004 xref: ncithesaurus:Left_Pulmonary_Vein is_a: UBERON:0002016 ! pulmonary vein [Term] id: UBERON:0009032 name: right pulmonary vein namespace: uberon xref: MA:0002208 xref: SCTID:304056008 xref: ncithesaurus:Right_Pulmonary_Vein is_a: UBERON:0002016 ! pulmonary vein [Term] id: UBERON:0009034 name: stomach region namespace: uberon xref: MA:0002561 xref: SCTID:245415005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure [Term] id: UBERON:0009035 name: renal straight tubule namespace: uberon comment: todo - add relationships xref: MA:0002634 xref: SCTID:245151008 is_a: UBERON:0001231 ! nephron tubule [Term] id: UBERON:0009038 name: sulcus ampullaris namespace: uberon def: "the groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove] synonym: "ampullary groove" EXACT [FMA:74584] synonym: "ampullary sulcus" EXACT [] xref: FMA:74584 xref: MA:0002835 xref: SCTID:368954006 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0004043 ! semicircular canal ampulla [Term] id: UBERON:0009039 name: lymph node germinal center namespace: uberon xref: MA:0002989 xref: SCTID:16733004 xref: ncithesaurus:Lymph_Node_Germinal_Center is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue [Term] id: UBERON:0009040 name: deep circumflex iliac artery namespace: uberon def: "The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone." [Wikipedia:Deep_circumflex_iliac_artery] synonym: "arteria circumflexa ilium profunda" EXACT [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex" RELATED [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex artery" RELATED [Wikipedia:Deep_circumflex_iliac_artery] xref: FMA:20687 xref: http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png xref: ncithesaurus:Deep_Circumflex_Iliac_Artery is_a: UBERON:0009026 ! iliac circumflex artery relationship: part_of UBERON:0001308 ! external iliac artery [Term] id: UBERON:0009041 name: superficial circumflex iliac artery namespace: uberon def: "The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries." [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "arteria circumflexa ilium superficialis" EXACT [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "iliac circumflex artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "superficial circumflex iliac artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] xref: FMA:20737 xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png xref: ncithesaurus:Superficial_Circumflex_Iliac_Artery is_a: UBERON:0009026 ! iliac circumflex artery relationship: part_of UBERON:0001308 ! external iliac artery relationship: part_of UBERON:0002060 ! femoral artery [Term] id: UBERON:0009042 name: prostatic venous plexus namespace: uberon def: "The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses." [Wikipedia:Prostatic_venous_plexus] synonym: "pudendal venous plexus" RELATED [FMA:29711] xref: FMA:29711 is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0009044 name: pudendal venous plexus namespace: uberon def: "The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins." [Wikipedia:Pudendal_plexus_(veins)] xref: SCTID:65326006 is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0009046 name: inferior external pudendal vein namespace: uberon xref: MA:0002203 is_a: UBERON:0009029 ! pudendal vein [Term] id: UBERON:0009047 name: superior external pudendal vein namespace: uberon xref: MA:0002204 is_a: UBERON:0009029 ! pudendal vein [Term] id: UBERON:0009048 name: deep external pudendal vein namespace: uberon xref: FMA:44488 is_a: UBERON:0009029 ! pudendal vein [Term] id: UBERON:0009049 name: superficial external pudendal vein namespace: uberon xref: FMA:21377 is_a: UBERON:0009029 ! pudendal vein [Term] id: UBERON:0009050 name: nucleus of solitary tract namespace: uberon def: "." [Wikipedia:Solitary_nucleus] synonym: "nucleus of the tractus solitarius" EXACT [NIF_GrossAnatomy:birnlex_1429] synonym: "nucleus of tractus solitarius" EXACT [Wikipedia:Solitary_nucleus] synonym: "solitary nucleus" EXACT [] synonym: "solitary tract nucleus" EXACT [] xref: ABA:NTS xref: BM:Me-NS xref: BTO:0003963 xref: EV:0100288 xref: FMA:256691 xref: GAID:593 xref: MA:0001052 xref: MESH:A.08.186.211.132.810.406.750 xref: NIF_GrossAnatomy:birnlex_1429 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: ncithesaurus:Nucleus_of_the_Solitary_Tract xref: ncithesaurus:Solitary_Nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:0009051 name: gelatinous nucleus of solitary tract namespace: uberon xref: ABA:NTSge xref: FMA:77463 is_a: UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0009052 name: medial nucleus of solitary tract namespace: uberon xref: ABA:NTSm xref: FMA:229585 is_a: UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0009053 name: dorsal nucleus of trapezoid body namespace: uberon synonym: "dorsal nucleus of trapezoid body" EXACT [NIF_GrossAnatomy:birnlex_2575] xref: NIF_GrossAnatomy:birnlex_2575 xref: SCTID:369021001 is_a: UBERON:0007633 ! nucleus of trapezoid body [Term] id: UBERON:0009054 name: open circulatory system namespace: uberon comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph is_a: UBERON:0001009 ! circulatory system [Term] id: UBERON:0009055 name: closed circulatory system namespace: uberon comment: Editor notes: consider merging with cardiovascular system? Taxon notes: The circulatory systems of all vertebrates, as well as of annelids (for example, earthworms) and cephalopods (squid and octopus) are closed, just as in humans. Still, the systems of fish, amphibians, reptiles, and birds show various stages of the evolution of the circulatory system is_a: UBERON:0001009 ! circulatory system [Term] id: UBERON:0009056 name: two-pass circulatory system namespace: uberon def: "A closed circulatory system in which blood passes twice through the heart to supply the body once." [GO:0035905, Wikipedia:Double_circulatory_system] is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009057 name: one-pass circulatory system namespace: uberon def: "A closed circulatory system in which blood passes once through the heart to supply the body once." [GO:0035907] is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009058 name: faveolus namespace: uberon def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [PMID:12869615] comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] synonym: "edicula" RELATED SENSU [PMID:12625309] synonym: "faveoli" RELATED PLURAL [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009060 name: air sac namespace: uberon def: "any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs" [Wikipedia:Bird_anatomy#Respiratory_system, http://www.thefreedictionary.com/air+sac] comment: Three distinct sets of organs perform respirationbthe anterior air sacs (interclavicular, cervicals, and anterior thoracics), the lungs, and the posterior air sacs (posterior thoracics and abdominals). The posterior and anterior air sacs, typically nine, expand during inhalation. Air enters the bird via the trachea. Half of the inhaled air enters the posterior air sacs, the other half passes through the lungs and into the anterior air sacs. Air from the anterior air sacs empties directly into the trachea and out the bird's mouth or nares. The posterior air sacs empty their air into the lungs. Air passing through the lungs as the bird exhales is expelled via the trachea. Some taxonomic groups (Passeriformes) possess 7 air sacs, as the clavicular air sacs may interconnect or be fused with the cranial thoracic air sacs[WP] synonym: "psotcranial air sac" RELATED [UBERON:cjm] xref: MESH:A.13.048 xref: SCTID:49081009 xref: http://upload.wikimedia.org/wikipedia/commons/f/f2/BirdRespiration.svg is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0009061 name: anterior air sac namespace: uberon is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009062 name: posterior air sac namespace: uberon comment: Half of the inhaled air enters the posterior air sacs. The posterior air sacs empty their air into the lungs. is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009063 name: interclavicular air sac namespace: uberon is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009064 name: cervical air sac namespace: uberon xref: SCTID:62426003 is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009065 name: anterior thoracic air sac namespace: uberon is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009066 name: posterior thoracic air sac namespace: uberon xref: SCTID:10576005 is_a: UBERON:0009062 ! posterior air sac [Term] id: UBERON:0009067 name: abdominal air sac namespace: uberon xref: SCTID:43701009 is_a: UBERON:0009062 ! posterior air sac [Term] id: UBERON:0009071 name: mesobronchus namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "mesobronchi" RELATED PLURAL [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009072 name: ventrobronchus namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009073 name: dorsobronchus namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009074 name: syrinx organ namespace: uberon def: "vocal organ of birds, located at the base of a trachea" [Wikipedia:Syrinx_(bird_anatomy)] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "avian vocal organ" RELATED [] synonym: "syrinx" RELATED [] xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Syrinx.jpg is_a: UBERON:0000062 ! organ [Term] id: UBERON:0009075 name: membrana tympaniformis namespace: uberon synonym: "wall of syrinx" EXACT [Wikipedia:Syrinx_(bird_anatomy)] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009076 name: membrana tympaniformis lateralis namespace: uberon is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009077 name: membrana tympaniformis medialis namespace: uberon is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009078 name: pessulus namespace: uberon def: "A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds" [http://www.encyclo.co.uk/webster/P/64] is_a: UBERON:0007844 ! cartilaginous element relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009089 name: inner medulla vasa recta descending limb namespace: uberon xref: KUPO:0001003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0004776 ! inner renal medulla vasa recta [Term] id: UBERON:0009090 name: outer medulla vasa recta descending limb namespace: uberon xref: KUPO:0001004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0004775 ! outer renal medulla vasa recta [Term] id: UBERON:0009091 name: vasa recta ascending limb namespace: uberon xref: KUPO:0001005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0004726 ! vasa recta [Term] id: UBERON:0009092 name: inner medulla vasa recta ascending limb namespace: uberon xref: KUPO:0001006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0004776 ! inner renal medulla vasa recta [Term] id: UBERON:0009093 name: outer medulla vasa recta ascending limb namespace: uberon xref: KUPO:0001007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0004775 ! outer renal medulla vasa recta [Term] id: UBERON:0009095 name: tip of renal papilla namespace: uberon synonym: "papillary tip" EXACT [KUPO:0001009] synonym: "papillary tips" EXACT PLURAL [KUPO:0001009] xref: KUPO:0001009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001228 ! renal papilla [Term] id: UBERON:0009096 name: gravid stage namespace: uberon def: "The adult stage at which the organism contains a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733] synonym: "gravid" RELATED [BTO:0004733] synonym: "pregnant adult stage" RELATED [BTO:0004733] synonym: "pregnant stage" RELATED [BTO:0004733] xref: BTO:0004733 is_a: UBERON:0000113 ! post-juvenile adult stage [Term] id: UBERON:0009097 name: gravid organism namespace: uberon def: "An organism containing a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733] synonym: "pregnant organism" RELATED [] is_a: UBERON:0007023 ! adult organism [Term] id: UBERON:0009098 name: gravid uterus namespace: uberon def: "The uterus in pregnancy" [http://medical-dictionary.thefreedictionary.com/gravid+uterus] xref: ncithesaurus:Gravid_Uterus is_a: UBERON:0000995 ! uterus relationship: part_of UBERON:0009097 ! gravid organism [Term] id: UBERON:0009099 name: typhlosole namespace: uberon def: "an invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development." [Wikipedia:Typhlosole, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0009100 name: nephric fold namespace: uberon comment: Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0009101 name: ammocoete namespace: uberon def: "lamprey at larval stage" [] is_a: UBERON:0002548 ! larva [Term] id: UBERON:0009102 name: supraneural body namespace: uberon def: "One of the primary immunological organs of the adult lamprey is the supraneural body. This structure lies dorsal to spinal column and becomes heavily populated with lymphocytes following after immune challenge [13b15]. The supraneural body from hematopoietically stimulated lampreys appears to be histologically-similar to bbone marrowb in higher vertebrates and contains all blood cell lineages and their precursors, including lymphocytes at all stages of maturity[16]." [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2823822/#R16] subset: organ_slim ! organs, excluding individual muscles and skeletal elements synonym: "dorsal fat body" EXACT [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] synonym: "pro-vertebral arch" EXACT [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] is_a: UBERON:0000062 ! organ is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0009113 name: thymic region namespace: uberon is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0009114 name: cervical thymus namespace: uberon def: "A mature thymus that is entirely part of the cervical region." [UBERON:cjm] comment: A cervical thymus is a pathological structure in a human - it can form during the migration of the thymus to its location in the mediastinum. Some mice have a cervical thymus. There are examples of cervical thymi in marsupials and prosimians[ISBN-10:0781714125] subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0002370 ! thymus [Term] id: UBERON:0009115 name: thoracic thymus namespace: uberon def: "A mature thymus that is entirely part of thoracic region." [UBERON:cjm] subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0002370 ! thymus is_a: UBERON:0005178 ! thoracic cavity organ [Term] id: UBERON:0009116 name: thymoid namespace: uberon def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [PMID:21293377] comment: Genes: FOXN1 subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0003295 ! pharyngeal gland is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0005058 ! hemolymphoid system gland is_a: UBERON:0006925 ! digestive gland relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system relationship: part_of UBERON:0009101 ! ammocoete relationship: part_of UBERON:0009119 ! branchial basket [Term] id: UBERON:0009117 name: indifferent gonad namespace: uberon def: "A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981] comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: EHDAA2:0000716 xref: ncithesaurus:Indifferent_Gonad is_a: UBERON:0000991 ! gonad relationship: part_of UBERON:0009196 ! indifferent external genitalia [Term] id: UBERON:0009118 name: marsupial pouch namespace: uberon synonym: "pouch" BROAD [] is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0009119 name: branchial basket namespace: uberon def: "the network-like cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali" [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0009120 name: gill filament namespace: uberon def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [ZFIN:ZDB-PUB-961014-576, http:www.briancoad.com/Dictionary/G.htm] synonym: "gill filaments" EXACT PLURAL [ZFA:0000667] xref: BTO:0002150 xref: TAO:0000667 xref: ZFA:0000667 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002535 ! gill [Term] id: UBERON:0009121 name: vomeronasal nerve namespace: uberon def: "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb[AAO]. originates in the olfactory epithelial cells of Jacobson's organ, and that passes through the submucous tissue of the nasal septum and the cribriform plate of the ethmoid bone to the olfactory bulb[BTO]." [AAO:DSM, BTO:0001351] comment: in the human this disappears before birth xref: AAO:0010608 xref: BTO:0001351 xref: NIF_GrossAnatomy:nlx_anat_1005018 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0009122 name: adenohypophyseal placode namespace: uberon def: "The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary" [http://www.ncbi.nlm.nih.gov/books/NBK53175/] comment: Editor notes: consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm. Addtional notes: Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathkebs pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathkebs pouch, the anlage of the adenohypophysis. Rathkebs pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathkebs pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009) synonym: "pituitary placode" RELATED [ZFA:0001198] xref: TAO:0001198 xref: XAO:0004208 xref: ZFA:0001198 is_a: UBERON:0002546 ! cranial placode [Term] id: UBERON:0009123 name: otic cup namespace: uberon is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0009124 name: geniculate placode namespace: uberon def: "Rostralmost epibranchial placode. Associated with 1st branchial cleft." [NBK:NBK53175] synonym: "facial epibranchial placode" EXACT [XAO:0004211] synonym: "facial placode" EXACT [ZFA:0001295] xref: TAO:0001295 xref: XAO:0004211 xref: ZFA:0001295 is_a: UBERON:0003078 ! epibranchial placode [Term] id: UBERON:0009125 name: petrosal placode namespace: uberon def: "Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft." [NBK:NBK53175] synonym: "glossopharyngeal epibranchial placode" EXACT [XAO:0004212] synonym: "glossopharyngeal placode" EXACT [ZFA:0001296] xref: TAO:0001296 xref: XAO:0004212 xref: ZFA:0001296 is_a: UBERON:0003078 ! epibranchial placode [Term] id: UBERON:0009126 name: nodosal placode namespace: uberon def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NBK:NBK53175] synonym: "nodose placode" EXACT [XAO:0004213] synonym: "vagal epibranchial placode" EXACT [XAO:0004213] xref: XAO:0004213 is_a: UBERON:0003078 ! epibranchial placode [Term] id: UBERON:0009127 name: epibranchial ganglion namespace: uberon def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest synonym: "epibranchial ganglia" EXACT PLURAL [ZFA:0001555] xref: TAO:0001555 xref: ZFA:0001555 xref: ZFIN:ZDB-ANAT-070928-157 is_a: UBERON:0001714 ! cranial ganglion [Term] id: UBERON:0009128 name: lateral line placode namespace: uberon synonym: "lateral line placodes" RELATED PLURAL [XAO:0000440] xref: XAO:0000440 is_a: UBERON:0009955 ! neurogenic placode [Term] id: UBERON:0009129 name: right atrium endocardium namespace: uberon synonym: "endocardium of right atrium" EXACT [FMA:7281] xref: EHDAA2:0000274 xref: FMA:7281 xref: SCTID:3194006 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0002166 ! endocardium of atrium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006914 ! squamous epithelium relationship: part_of UBERON:0006218 ! common atrial chamber [Term] id: UBERON:0009130 name: dorsal meso-duodenum namespace: uberon xref: RETIRED_EHDAA2:0000411 xref: SCTID:361433003 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005712 ! midgut duodenum mesentery [Term] id: UBERON:0009131 name: midbrain vesicle namespace: uberon is_obsolete: true xref: EHDAA2:0001103 xref: SCTID:361481005 [Term] id: UBERON:0009132 name: peroneus namespace: uberon xref: EHDAA2:0001450 xref: EHDAA:8297 xref: SCTID:181694005 is_a: UBERON:0001383 ! muscle of leg is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:0004256 ! hindlimb zeugopod muscle relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0009133 name: pleuroperitoneal membrane namespace: uberon alt_id: UBERON:0009146 def: "A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities." [Wikipedia:Pleuroperitoneal, http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane] synonym: "pleuroperitoneal membranes" EXACT PLURAL [EHDAA2:0001483] xref: EHDAA2:0001483 xref: EMAPA:17709 xref: SCTID:361429005 xref: ncithesaurus:Pleuroperitoneal_Membrane is_a: UBERON:0000479 ! tissue is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009138 name: right common common cardinal vein namespace: uberon synonym: "common cardinal vein right" EXACT [EHDAA2:0004535] xref: EHDAA2:0004535 xref: FMA:70310 xref: SCTID:361507009 is_a: UBERON:0002064 ! common cardinal vein relationship: part_of UBERON:0004344 ! cardinal vein [Term] id: UBERON:0009139 name: right posterior cardinal vein namespace: uberon xref: EHDAA2:0004536 xref: SCTID:361505001 is_a: UBERON:0001638 ! vein is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004344 ! cardinal vein [Term] id: UBERON:0009140 name: right subcardinal vein namespace: uberon xref: EHDAA2:0004538 xref: SCTID:361452009 is_a: UBERON:0001638 ! vein is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004344 ! cardinal vein [Term] id: UBERON:0009141 name: craniocervical region vein namespace: uberon synonym: "craniocervical vein" EXACT [] synonym: "head and neck veins" EXACT [EHDAA2:0004542] synonym: "vein of head and neck" EXACT [] xref: EHDAA2:0004542 xref: SCTID:32945007 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0009142 name: entire mesenchyme namespace: uberon alt_id: UBERON:0003313 comment: consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm) xref: EHDAA2:0001113 xref: EHDAA:177 xref: EMAPA:16097 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0009143 name: esophageal region namespace: uberon synonym: "oesophageal region" EXACT [RETIRED_EHDAA2:0000654] xref: EMAPA:16700 xref: RETIRED_EHDAA2:0000654 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0009145 name: pharyngeal region namespace: uberon xref: EMAPA:16549 xref: RETIRED_EHDAA2:0001454 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0009149 name: foramen primum namespace: uberon def: "opening in the septum primum between the two atria of the embryonic heart." [Wikipedia:Ostium_primum, http://medical-dictionary.thefreedictionary.com/foramen+primum] synonym: "interatrial foramen primum" EXACT [Wikipedia:Ostium_primum] synonym: "ostium primum" EXACT [http://medical-dictionary.thefreedictionary.com/foramen+primum] synonym: "primary interatrial foramen" EXACT [Wikipedia:Ostium_primum] xref: EHDAA2:0001826 xref: EMAPA:17012 xref: SCTID:308852002 xref: ncithesaurus:Foramen_Primum is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002085 ! interatrial septum relationship: part_of UBERON:0004154 ! septum primum [Term] id: UBERON:0009191 name: sphenoid bone pre-cartilage condensation namespace: uberon xref: EHDAA2:0003446 xref: EMAPA:18015 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009192 name: basisphenoid pre-cartilage condensation namespace: uberon synonym: "basi-sphenoid pre-cartilage condensation" EXACT [EHDAA2:0003447] xref: EHDAA2:0003447 xref: EMAPA:18013 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0006904 ! mesenchyme derived from head mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009193 name: sphenoid bone cartilage condensation namespace: uberon xref: EHDAA2:0001888 is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009194 name: basisphenoid cartilage condenstion namespace: uberon xref: EHDAA2:0000166 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation [Term] id: UBERON:0009195 name: anal membrane namespace: uberon comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] xref: EHDAA2:0004018 xref: ncithesaurus:Anal_Membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0009196 name: indifferent external genitalia namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: EHDAA2:0004021 is_a: UBERON:0004176 ! external reproductive organ [Term] id: UBERON:0009197 name: basioccipital pre-cartilage condensation namespace: uberon xref: EHDAA2:0000165 xref: EHDAA:6033 xref: EMAPA:18012 xref: VHOG:0000959 is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009198 name: craniofacial suture namespace: uberon def: "any suture between cranial and/or facial bones." [GO:0097094] xref: GO:0097094 is_a: UBERON:0000969 ! joint connecting hardened body parts [Term] id: UBERON:0009199 name: facial suture namespace: uberon def: "any suture between facial bones." [GO:0097096] is_a: UBERON:0009198 ! craniofacial suture [Term] id: UBERON:0009200 name: limb epidermis namespace: uberon def: "The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: UBERON:0001003 ! epidermis is_a: UBERON:0004120 ! mesoderm-derived structure [Term] id: UBERON:0009201 name: nephric duct namespace: uberon def: "A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176] comment: pronephric duct or mesonephric duct is_a: UBERON:0000058 ! duct is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006553 ! renal duct is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009202 name: vasa recta descending limb namespace: uberon xref: KUPO:0001002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0004726 ! vasa recta [Term] id: UBERON:0009203 name: nasal suture namespace: uberon def: "a suture joining the nasal bones." [Wikipedia:Internasal_suture] comment: SNOMED has different terms for nasal and internasal synonym: "internasal suture" EXACT [FMA:52959, GO:0097097] synonym: "internasal suture of skull" EXACT [FMA:52959] synonym: "nasal suture of skull" EXACT [SCTID:368992007] synonym: "sutura internasalis" EXACT [Wikipedia:Internasal_suture] xref: FMA:52959 xref: SCTID:368990004 xref: SCTID:368992007 is_a: UBERON:0009199 ! facial suture [Term] id: UBERON:0009204 name: medial nasal process mesenchyme namespace: uberon xref: EHDAA2:0001077 xref: EMAPA:16810 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process relationship: part_of UBERON:0004068 ! medial nasal prominence [Term] id: UBERON:0009205 name: lateral nasal process mesenchyme namespace: uberon synonym: "mesenchyme of latero-nasal process" EXACT [EMAPA:16807] xref: EHDAA2:0000917 xref: EMAPA:16807 is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process [Term] id: UBERON:0009206 name: lateral nasal process surface ectoderm namespace: uberon synonym: "ectoderm of latero-nasal process" EXACT [EMAPA:16806] xref: EHDAA2:0000918 xref: EMAPA:16806 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0000924 ! ectoderm is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: UBERON:0009207 name: geschmacksstreifen namespace: uberon def: "Area between hard and soft palates rich in tastebuds." [UBERON:cjm] is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0009210 name: pharyngeal membrane namespace: uberon def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] synonym: "pharyngeal membrane" EXACT [] xref: ncithesaurus:Pharyngeal_Membrane is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0009213 name: pharyngeal membrane of 1st arch namespace: uberon def: "separates the first pharyngeal groove from the first pharyngeal pouch." [ISBN10:1416037055] comment: check EMAPA - 3 terms appear to match. We follow EMAPA in making each membrane part of the arch with the same number, though in fact it is between these arches synonym: "1st branchial membrane" EXACT [EMAPA:16992] synonym: "1st pharyngeal membrane" EXACT [VHOG:0001427] synonym: "future tympanic membrane" EXACT [EMAPA:17281] synonym: "tympanic membrane primordium" EXACT [ISBN10:1416037055] xref: EHDAA:3788 xref: EMAPA:16121 xref: EMAPA:16992 xref: EMAPA:17281 xref: VHOG:0001427 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0009215 name: pharyngeal membrane of 2nd arch namespace: uberon synonym: "2nd pharyngeal membrane" EXACT [VHOG:0000877] xref: EMAPA:16273 xref: VHOG:0000877 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0003066 ! hyoid arch [Term] id: UBERON:0009216 name: pharyngeal membrane of 3rd arch namespace: uberon synonym: "3rd pharyngeal membrane" EXACT [VHOG:0000876] xref: EMAPA:16583 xref: VHOG:0000876 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0003114 ! pharyngeal arch 3 [Term] id: UBERON:0009217 name: pharyngeal membrane of 4th arch namespace: uberon synonym: "4th pharyngeal membrane" EXACT [UBERON:cjm] xref: EMAPA:16763 is_a: UBERON:0009210 ! pharyngeal membrane relationship: part_of UBERON:0003115 ! pharyngeal arch 4 [Term] id: UBERON:0009291 name: cartilaginous centrum of vertebra namespace: uberon xref: SCTID:317278007 is_a: UBERON:0001075 ! body of vertebra is_a: UBERON:0007844 ! cartilaginous element [Term] id: UBERON:0009292 name: embryonic nasal process namespace: uberon xref: EHDAA:4776 xref: EMAPA:16680 xref: SCTID:308881001 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009293 name: embryonic frontal process namespace: uberon xref: EHDAA:4780 xref: EMAPA:16802 xref: SCTID:346265009 xref: VHOG:0001323 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0004066 ! frontonasal prominence [Term] id: UBERON:0009468 name: basiotic bone namespace: uberon def: "a small bone in the fetus between the basilar process and the basisphenoid." [http://medical-dictionary.thefreedictionary.com/basiotic+bone] xref: SCTID:95946002 is_a: UBERON:0001474 ! bone is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009470 name: postsphenoidal bone namespace: uberon def: "the posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae." [Wikipedia:Ossification_of_sphenoid#Postsphenoid, http://www.merriam-webster.com/dictionary/postsphenoid] xref: SCTID:95950009 is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0009471 name: dorsum of tongue namespace: uberon def: "the superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "dorsal tongue" EXACT [FMA:54651] synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "tongue dorsum" EXACT [FMA:54651] xref: FMA:54651 xref: SCTID:66938003 xref: ncithesaurus:Dorsum_of_the_Tongue is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0009472 name: axilla namespace: uberon def: "The axilla is the area on the human body directly under the joint where the arm connects to the shoulder." [Wikipedia:Axilla] synonym: "arm pit" EXACT [Wikipedia:Axilla] synonym: "armpit" EXACT [Wikipedia:Axilla] synonym: "armpits" RELATED [Wikipedia:Axilla] synonym: "axillae" RELATED [Wikipedia:Axilla] synonym: "axillary region" EXACT [FMA:24864, Wikipedia:Axilla] synonym: "oxter" RELATED [Wikipedia:Axilla] synonym: "regio axillaris" EXACT [FMA:TA] synonym: "underarm" RELATED [Wikipedia:Axilla] xref: FMA:24864 xref: MESH:A.01.378.800.090 xref: ncithesaurus:Axilla is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001421 ! pectoral girdle [Term] id: UBERON:0009473 name: parapodium namespace: uberon def: "either of a pair of fleshy lateral processes borne by most segments of a polychaete worm." [Wikipedia:Parapodium, http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672] synonym: "paradpod" EXACT [] synonym: "paradpodia" RELATED PLURAL [] synonym: "polychaete paradpodium" EXACT [] is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0000914 ! organismal segment [Term] id: UBERON:0009474 name: ascidian ampulla namespace: uberon synonym: "ampulla" BROAD [] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0009475 name: ampullar siphon namespace: uberon is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0009474 ! ascidian ampulla [Term] id: UBERON:0009476 name: madreporite namespace: uberon def: "The madreporite is an opening used to filter water into the water vascular system of echinoderms. It is visible as a small red or yellow button-like structure, looking like a small wart, on the aboral surface of the central disk of a sea star. Close up, it is visibly structured, resembling a \"madrepore\" colony. From this, it derives its name. The water vascular system of the sea star consists of a series of seawater-filled ducts that function in locomotion and feeding and respiration. Its main parts are the madreporite, the stone canal, the ring canal, the radial canals, the lateral canals, and the tube feet. The sieve-like madreporite allows entry of seawater into the stone canal, which connects to the ring canal around the mouth. Five or more radial canals extend from the ring canal, one in each arm above the ambulacral groove. From the radial canals extend many lateral canals, each of which leads to a tube foot. Each tube foot is a closed cylinder with muscular walls, having a sucker at the outer end and a bulb-like ampulla at its inner end within the body cavity." [Wikipedia:Madreporite] is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0008251 ! water vascular system relationship: part_of UBERON:0008259 ! aboral surface [Term] id: UBERON:0009477 name: associated mesenchyme of otic placode namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001340 xref: EMAPA:16196 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: UBERON:0009478 name: associated mesenchyme of midgut namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001186 xref: EMAPA:16256 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0009479 name: ectoderm of buccopharyngeal membrane namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000190 xref: EMAPA:16260 is_a: UBERON:0000924 ! ectoderm [Term] id: UBERON:0009480 name: endoderm of buccopharyngeal membrane namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000191 xref: EMAPA:16261 is_a: UBERON:0000925 ! endoderm [Term] id: UBERON:0009481 name: cavity of pericardio-peritoneal canal namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001441 xref: EMAPA:16283 is_a: UBERON:0005082 ! tube lumen [Term] id: UBERON:0009482 name: associated mesenchyme of foregut-midgut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000570 xref: EMAPA:16364 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0009483 name: mesentery of foregut-midgut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000575 xref: EMAPA:16365 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! mesentery [Term] id: UBERON:0009484 name: dorsal mesentery of mesentery of foregut-midgut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000571 xref: EMAPA:16366 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction [Term] id: UBERON:0009494 name: pharyngeal arch mesenchymal region namespace: uberon def: "A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm] comment: Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262] synonym: "branchial arch mesenchyme" EXACT [MP:0011262] synonym: "pharyngeal arch mesenchyme" EXACT [UBERON:cjm] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme [Term] id: UBERON:0009495 name: extrahepatic part of biliary bud namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000172 xref: EMAPA:16562 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac [Term] id: UBERON:0009496 name: intrahepatic part of biliary bud namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000173 xref: EMAPA:16563 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac [Term] id: UBERON:0009497 name: epithelium of foregut-midgut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000573 xref: EMAPA:16564 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! gut epithelium [Term] id: UBERON:0009499 name: parietal of mesothelium of pericardio-peritoneal canal namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001409 xref: EMAPA:16590 is_a: UBERON:0001136 ! mesothelium is_a: UBERON:0007185 ! pericardio-peritoneal canal mesothelium relationship: part_of UBERON:0007185 ! pericardio-peritoneal canal mesothelium [Term] id: UBERON:0009500 name: associated mesenchyme of otocyst namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001343 xref: EMAPA:16670 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009501 name: mesenchyme of fronto-nasal process namespace: uberon def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head" [MP:0011266] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "frontonasal mesenchyme" EXACT [MP:0011266] synonym: "naso-frontal mesenchyme" EXACT [MP:0011266] xref: EHDAA2:0004109 xref: EMAPA:16683 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: UBERON:0009502 name: ventral mesentery of mesentery of foregut-midgut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EMAPA:16714 xref: RETIRED_EHDAA2:0000576 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction [Term] id: UBERON:0009503 name: associated mesenchyme of hindgut namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000780 xref: EMAPA:16716 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0009504 name: associated mesenchyme of main bronchus namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001045 xref: EMAPA:16850 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0009505 name: associated mesenchyme of trachea namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0002067 xref: EMAPA:16854 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0009506 name: associated mesenchyme of middle ear namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001182 xref: EMAPA:17001 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0009521 name: anal membrane endodermal component namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0004020 xref: EMAPA:17177 is_a: UBERON:0003260 ! endoderm of hindgut [Term] id: UBERON:0009522 name: lateral lingual swelling epithelium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000913 xref: EMAPA:17190 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009523 name: mesenchyme of handplate namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "hand plate mesenchyme" EXACT [] synonym: "handplate mesenchyme" EXACT [EHDAA2:0000731] xref: EHDAA2:0000731 xref: EMAPA:17248 is_a: UBERON:0003413 ! forelimb bud mesenchyme [Term] id: UBERON:0009526 name: maxillary process mesenchyme namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked synonym: "mesenchyme of maxillary process" EXACT [EMAPA:17361] synonym: "mesenchyme of maxillary prominence" EXACT [UBERON:cjm] xref: EHDAA2:0001071 xref: EMAPA:17361 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009536 name: vascular element of left lung namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000963 xref: EMAPA:17660 is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus [Term] id: UBERON:0009537 name: vascular element of right lung namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001757 xref: EMAPA:17668 is_a: UBERON:0000102 ! lung vasculature is_a: UBERON:0005629 ! vascular plexus [Term] id: UBERON:0009538 name: mesenchyme of sublingual gland primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001937 xref: EMAPA:17754 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009539 name: mesenchyme of submandibular gland primordium namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001941 xref: EMAPA:17757 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009548 name: hepatic sinusoid of left of lobe of liver namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001001 xref: EMAPA:18309 is_a: UBERON:0001281 ! hepatic sinusoid [Term] id: UBERON:0009549 name: hepatic sinusoid of right of lobe of liver namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001009 xref: EMAPA:18316 is_a: UBERON:0001281 ! hepatic sinusoid [Term] id: UBERON:0009550 name: endoderm of foregut-midgut junction namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000572 xref: EMAPA:18403 is_a: UBERON:0000925 ! endoderm is_a: UBERON:0004119 ! endoderm-derived structure [Term] id: UBERON:0009551 name: distal segment of digit namespace: uberon def: "A segment of a digit containing the distal phalanx, and overlapping the interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [doi:10.1038/nature10346] comment: Newborn and adult mice are able to regrow forelimb (finger) and hindlimb (toe) digit tips after their amputation through the distal interphalangeal joint. Regeneration of the digit tip involves the integrated regrowth of multiple tissues within 2b3b months, reaching an external morphology that is cosmetically and functionally similar to normal digits. Most importantly, regeneration of the mouse distal digit shares morphological similarities with clinical cases documenting regrowth of missing distal portions of fingers in both children and adults synonym: "digit tip" EXACT [UBERON:cjm] synonym: "distal digit segment" EXACT [UBERON:cjm] synonym: "tip of digit" EXACT [UBERON:cjm] is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0009552 name: distal segment of hand digit namespace: uberon alt_id: UBERON:0004093 def: "." [HP:0001211] comment: in SNOMED this is a surface region. Here we intend it to be the entire distal segment synonym: "finger digit tip" EXACT [doi:10.1038/nature10346] synonym: "finger distal segment" EXACT [UBERON:cjm] synonym: "finger tip" EXACT [UBERON:cjm] synonym: "fingertip" EXACT [HP:0001211] synonym: "forelimb digit tip" EXACT [doi:10.1038/nature10346] synonym: "tip of finger" EXACT [SCTID:312543003] xref: OpenCyc:Mx4rvVjpf5wpEbGdrcN5Y29ycA xref: SCTID:312543003 is_a: UBERON:0009551 ! distal segment of digit [Term] id: UBERON:0009553 name: distal segment of foot digit namespace: uberon synonym: "hindlimb digit tip" EXACT [doi:10.1038/nature10346] synonym: "tip of toe" EXACT [UBERON:cjm] synonym: "toe digit tip" EXACT [doi:10.1038/nature10346] synonym: "toe distal segment" EXACT [UBERON:cjm] is_a: UBERON:0009551 ! distal segment of digit [Term] id: UBERON:0009554 name: coffin bone namespace: uberon def: "the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint " [Wikipedia:Coffin_bone] synonym: "equine distal phalanx" EXACT [UBERON:cjm] synonym: "pedal bone" EXACT [Wikipedia:Coffin_bone, Wikipedia:Equine_forelimb_anatomy#Distal_phalanx] is_a: UBERON:0004300 ! distal phalanx [Term] id: UBERON:0009555 name: short pastern bone namespace: uberon def: "." [Wikipedia:Equine_forelimb_anatomy#Middle_phalanx] synonym: "equine middle phalanx" EXACT [UBERON:cjm] is_a: UBERON:0004301 ! middle phalanx is_a: UBERON:0009558 ! pastern bone [Term] id: UBERON:0009556 name: long pastern bone namespace: uberon def: "." [Wikipedia:Equine_forelimb_anatomy#Proximal_phalanx] synonym: "equine proximal phalanx" EXACT [UBERON:cjm] is_a: UBERON:0004302 ! proximal phalanx is_a: UBERON:0009558 ! pastern bone [Term] id: UBERON:0009557 name: coffin joint namespace: uberon synonym: "equine distal interphalangeal joint" EXACT [UBERON:cjm] xref: SCTID:196392002 is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0009558 name: pastern bone namespace: uberon is_a: UBERON:0003221 ! phalanx relationship: part_of UBERON:0009563 ! pastern region of limb [Term] id: UBERON:0009559 name: metacarpal/tarsal-phalangeal joint namespace: uberon synonym: "fetlock" NARROW SENSU [UBERON:cjm, Wikipedia:Fetlock] synonym: "metacarpo-tarsophalangeal joint" EXACT [UBERON:cjm] is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003841 ! autopod joint [Term] id: UBERON:0009563 name: pastern region of limb namespace: uberon comment: note that digit is used very generically in uberon, to include the homologous region in ungulates xref: SCTID:370725009 is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0009564 name: distal limb integumentary appendage namespace: uberon def: "A nail, hoof or claw." [PMID:11710767] synonym: "unguis" RELATED [] xref: MESH:A.13.491 is_a: UBERON:0000026 ! appendage is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! epidermis relationship: part_of UBERON:0009551 ! distal segment of digit [Term] id: UBERON:0009565 name: nail of forelimb digit namespace: uberon synonym: "finger nail" EXACT [FMA:54327] synonym: "fingernail" EXACT [FMA:54327] synonym: "nail of finger" EXACT [FMA:54327] xref: FMA:54327 xref: ncithesaurus:Fingernail is_a: UBERON:0001705 ! nail relationship: part_of UBERON:0005276 ! dorsal skin of finger [Term] id: UBERON:0009566 name: intestinal submucosa namespace: uberon synonym: "submucosa of intestine" EXACT [FMA:15696] xref: FMA:15696 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0009567 name: nail of hindlimb digit namespace: uberon synonym: "nail of toe" EXACT [FMA:54328] synonym: "toe nail" EXACT [FMA:54328] synonym: "toenail" EXACT [FMA:54328] xref: FMA:54328 xref: ncithesaurus:Toe_Nail is_a: UBERON:0001705 ! nail relationship: part_of UBERON:0005277 ! dorsal skin of toe [Term] id: UBERON:0009568 name: trunk region of vertebral column namespace: uberon def: "Region of the vertebral column that is part of the trunk." [UBERON:cjm] synonym: "presacral region" RELATED [AAO:0000612] synonym: "thoracolumbar region" RELATED [AAO:0000612] xref: AAO:0000612 xref: XAO:0003077 is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0002412 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! vertebra [Term] id: UBERON:0009569 name: subdivision of trunk namespace: uberon synonym: "region of trunk" EXACT [FMA:25054] synonym: "trunk subdivision" EXACT [FMA:25054] xref: FMA:25054 xref: SCTID:22943007 xref: XAO:0000054 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0009570 name: spinal cord sulcus limitans namespace: uberon xref: EMAPA:17584 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009571 name: ventral midline namespace: uberon def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] xref: FBbt:00000093 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0009572 name: lumen of central canal of spinal cord namespace: uberon def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal] synonym: "cavity of central canal of spinal cord" EXACT [FMA:242845] synonym: "central canal lumen" EXACT [UBERON:cjm] xref: FMA:242845 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: UBERON:0009573 name: sulcus limitans of fourth ventricle namespace: uberon def: "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). It is seen as slight depressions separating the basal and alar plates[WP]" [Wikipedia:Sulcus_limitans] synonym: "sulcus limitans" RELATED [FMA:78496] xref: FMA:78496 xref: ncithesaurus:Sulcus_Limitans is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0009576 name: medulla oblongata sulcus limitans namespace: uberon xref: EHDAA2:0001100 xref: EMAPA:17561 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009577 name: metencephalon sulcus limitans namespace: uberon xref: EHDAA2:0001161 xref: EMAPA:17567 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009578 name: myelencephalon sulcus limitans namespace: uberon xref: EHDAA2:0001945 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009579 name: myelencephalon basal plate namespace: uberon comment: todo - check EHDAA2 post-CNS-revision xref: EHDAA2:0000646 xref: EMAPA:17088 xref: VHOG:0000322 is_a: UBERON:0004064 ! basal plate [Term] id: UBERON:0009580 name: diencephalon mantle layer namespace: uberon synonym: "diencephalon lateral wall mantle layer" EXACT [] xref: EHDAA2:0000397 xref: EMAPA:16906 is_a: UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0005591 ! diencephalon lateral wall [Term] id: UBERON:0009581 name: midbrain mantle layer namespace: uberon synonym: "midbrain lateral wall mantle layer" EXACT [] xref: EHDAA2:0001172 xref: EMAPA:16977 is_a: UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0005495 ! midbrain lateral wall [Term] id: UBERON:0009582 name: spinal cord lateral wall namespace: uberon synonym: "lateral wall spinal cord" EXACT [ZFA:0000996] xref: EMAPA:17579 xref: ZFA:0000996 is_a: UBERON:0005496 ! neural tube lateral wall relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0009583 name: spinal cord mantle layer namespace: uberon synonym: "spinal cord lateral wall mantle layer" EXACT [] xref: EMAPA:17580 is_a: UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0009582 ! spinal cord lateral wall [Term] id: UBERON:0009584 name: 1st arch mandibular mesenchyme namespace: uberon alt_id: UBERON:0010043 synonym: "mesenchymal region of mandibular component of first pharyngeal arch" EXACT [UBERON:cjm] synonym: "mesenchyme of mandibular component" EXACT [EMAPA:16385] xref: EHDAA2:0000034 xref: EMAPA:16385 is_a: UBERON:0010042 ! 1st arch mesenchyme relationship: part_of UBERON:0007237 ! 1st arch mandibular component [Term] id: UBERON:0009585 name: interdigital region mesenchyme namespace: uberon is_a: UBERON:0009749 ! limb mesenchyme [Term] id: UBERON:0009586 name: mesenchyme of interdigital region between digits 1 and 2 of forelimb namespace: uberon synonym: "interdigital region between fingers 1 and 2 mesenchyme" EXACT [EHDAA2:0000846] xref: EHDAA2:0000846 xref: EMAPA:17447 is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2 is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006026 ! interdigital region between fingers 1 and 2 [Term] id: UBERON:0009587 name: mesenchyme of interdigital region between digits 2 and 3 of forelimb namespace: uberon synonym: "interdigital region between fingers 2 and 3 mesenchyme" EXACT [EHDAA2:0000849] xref: EHDAA2:0000849 xref: EMAPA:17450 is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3 is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006029 ! interdigital region between fingers 2 and 3 [Term] id: UBERON:0009588 name: mesenchyme of interdigital region between digits 3 and 4 of forelimb namespace: uberon synonym: "interdigital region between fingers 3 and 4 mesenchyme" EXACT [EHDAA2:0000852] xref: EHDAA2:0000852 xref: EMAPA:17453 is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4 is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006032 ! interdigital region between fingers 3 and 4 [Term] id: UBERON:0009589 name: mesenchyme of interdigital region between digits 4 and 5 of forelimb namespace: uberon synonym: "interdigital region between fingers 4 and 5 mesenchyme" EXACT [EHDAA2:0000855] xref: EHDAA2:0000855 xref: EMAPA:17456 is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5 is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006035 ! interdigital region between fingers 4 and 5 [Term] id: UBERON:0009590 name: mesenchyme of interdigital region between digits 1 and 2 of hindlimb namespace: uberon synonym: "interdigital region between toes 1 and 2 mesenchyme" EXACT [EHDAA2:0000858] xref: EHDAA2:0000858 xref: EMAPA:17478 is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2 is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006038 ! interdigital region between toes 1 and 2 [Term] id: UBERON:0009591 name: mesenchyme of interdigital region between digits 2 and 3 of hindlimb namespace: uberon synonym: "interdigital region between toes 2 and 3 mesenchyme" EXACT [EHDAA2:0000861] xref: EHDAA2:0000861 xref: EMAPA:17481 is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3 is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006041 ! interdigital region between toes 2 and 3 [Term] id: UBERON:0009592 name: mesenchyme of interdigital region between digits 3 and 4 of hindlimb namespace: uberon synonym: "interdigital region between toes 3 and 4 mesenchyme" EXACT [EHDAA2:0000864] xref: EHDAA2:0000864 xref: EMAPA:17484 is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4 is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006044 ! interdigital region between toes 3 and 4 [Term] id: UBERON:0009593 name: mesenchyme of interdigital region between digits 4 and 5 of hindlimb namespace: uberon synonym: "interdigital region between toes 4 and 5 mesenchyme" EXACT [EHDAA2:0000867] xref: EHDAA2:0000867 xref: EMAPA:17487 is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5 is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006047 ! interdigital region between toes 4 and 5 [Term] id: UBERON:0009596 name: mesenchyme of interdigital region between digits 1 and 2 namespace: uberon is_a: UBERON:0009585 ! interdigital region mesenchyme [Term] id: UBERON:0009597 name: mesenchyme of interdigital region between digits 2 and 3 namespace: uberon is_a: UBERON:0009585 ! interdigital region mesenchyme [Term] id: UBERON:0009598 name: mesenchyme of interdigital region between digits 3 and 4 namespace: uberon is_a: UBERON:0009585 ! interdigital region mesenchyme [Term] id: UBERON:0009599 name: mesenchyme of interdigital region between digits 4 and 5 namespace: uberon is_a: UBERON:0009585 ! interdigital region mesenchyme [Term] id: UBERON:0009600 name: mesenchyme of interdigital region of forelimb namespace: uberon is_a: UBERON:0003859 ! forelimb mesenchyme is_a: UBERON:0009585 ! interdigital region mesenchyme [Term] id: UBERON:0009601 name: mesenchyme of interdigital region of hindlimb namespace: uberon is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0009585 ! interdigital region mesenchyme [Term] id: UBERON:0009602 name: left lung associated mesenchyme namespace: uberon xref: EHDAA2:0000944 xref: EMAPA:16730 xref: EMAPA:17654 is_a: UBERON:0004883 ! lung mesenchyme [Term] id: UBERON:0009603 name: right lung associated mesenchyme namespace: uberon xref: EHDAA2:0001739 xref: EMAPA:17662 is_a: UBERON:0004883 ! lung mesenchyme [Term] id: UBERON:0009610 name: forebrain neural plate namespace: uberon xref: TAO:0007018 xref: ZFA:0007018 is_a: UBERON:0003075 ! neural plate relationship: part_of UBERON:0003056 ! pre-chordal neural plate [Term] id: UBERON:0009611 name: midbrain neural plate namespace: uberon xref: TAO:0007019 xref: ZFA:0007019 xref: ZFIN:ZDB-ANAT-070928-200 is_a: UBERON:0003075 ! neural plate relationship: part_of UBERON:0003056 ! pre-chordal neural plate [Term] id: UBERON:0009612 name: forebrain midbrain boundary neural plate namespace: uberon xref: TAO:0007020 xref: ZFA:0007020 xref: ZFIN:ZDB-ANAT-070928-201 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0003056 ! pre-chordal neural plate [Term] id: UBERON:0009614 name: hindbrain neural plate namespace: uberon xref: TAO:0007022 xref: ZFA:0007022 xref: ZFIN:ZDB-ANAT-070928-203 is_a: UBERON:0003075 ! neural plate relationship: part_of UBERON:0003057 ! chordal neural plate [Term] id: UBERON:0009615 name: midbrain hindbrain boundary neural plate namespace: uberon comment: todo: developmental relationships for lines synonym: "MHB neural plate" EXACT [UBERON:cjm] synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044] xref: TAO:0007044 xref: ZFA:0007044 xref: ZFIN:ZDB-ANAT-070928-225 is_a: UBERON:0007281 ! presumptive midbrain hindbrain boundary relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0009616 name: presumptive midbrain namespace: uberon synonym: "presumptive mesencephalon" EXACT [ZFA:0000148] xref: ZFA:0000148 is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0002050 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! embryonic structure relationship: part_of UBERON:0006238 ! future brain [Term] id: UBERON:0009617 name: head paraxial mesenchyme namespace: uberon def: "Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022] synonym: "cephalic paraxial mesenchyme" EXACT [UBERON:cjm] synonym: "cephalic paraxial mesoderm" EXACT [UBERON:cjm] xref: EHDAA2:0000736 xref: EHDAA:364 xref: EMAPA:16171 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005253 ! head mesenchyme [Term] id: UBERON:0009618 name: trunk paraxial mesenchyme namespace: uberon synonym: "trunk paraxial mesoderm" RELATED [] xref: EHDAA2:0002094 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0009620 name: tail bud paraxial mesoderm namespace: uberon xref: EHDAA2:0003239 is_a: UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0002533 ! tail bud [Term] id: UBERON:0009621 name: tail somite namespace: uberon xref: AAO:0010383 xref: EMAPA:16860 xref: XAO:0003143 is_a: UBERON:0002329 ! somite relationship: part_of UBERON:0007812 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! post-anal tail [Term] id: UBERON:0009622 name: pronephric proximal straight tubule namespace: uberon def: "A proximal straight tubule that is part of a pronephros." [ZFIN:ZDB-PUB-071029-9] xref: TAO:0002239 xref: ZFA:0001621 is_a: UBERON:0001290 ! proximal straight tubule is_a: UBERON:0000058 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! duct relationship: part_of UBERON:0003060 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! pronephric duct [Term] id: UBERON:0009623 name: spinal nerve root namespace: uberon def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A.08.800.800.720.725] comment: ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS) synonym: "root of spinal nerve" EXACT [FMA:14060] synonym: "spinal neural root" EXACT [FMA:14060] xref: FMA:14060 xref: GAID:717 xref: MESH:A.08.800.800.720.725 xref: SCTID:362436008 xref: ZFA:0005578 xref: ncithesaurus:Spinal_Nerve_Root is_a: UBERON:0002211 ! nerve root is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:0001780 ! spinal nerve relationship: part_of UBERON:0002240 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! spinal cord [Term] id: UBERON:0009624 name: lumbar nerve namespace: uberon def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves] synonym: "lumbar spinal nerve" EXACT [FMA:5861] xref: FMA:5861 xref: ncithesaurus:Lumbar_Nerve is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0009625 name: sacral nerve namespace: uberon def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves] synonym: "sacral spinal nerve" EXACT [FMA:5862] xref: FMA:5862 xref: ncithesaurus:Sacral_Nerve is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0009629 name: coccygeal nerve namespace: uberon def: "The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone." [Wikipedia:Coccygeal_nerve] synonym: "coccygeal spinal nerve" EXACT [FMA:5863] xref: FMA:5863 xref: ncithesaurus:Coccygeal_Nerve is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0009630 name: root of thoracic nerve namespace: uberon synonym: "nerve root part of thoracic spinal cord" EXACT [NIF:NIF] synonym: "thoracic nerve root" EXACT [FMA:14064] synonym: "thoracic neural root" EXACT [FMA:14064] xref: FMA:14064 xref: NIF_GrossAnatomy:birnlex_836 is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009631 name: root of lumbar spinal nerve namespace: uberon synonym: "lumbar spinal nerve root" EXACT [FMA:16421] synonym: "lumbar spinal neural root" EXACT [FMA:16421] synonym: "nerve root part of lumbar spinal cord" EXACT [NIF:NIF] xref: FMA:16421 xref: NIF_GrossAnatomy:birnlex_1613 xref: ncithesaurus:Lumbar_Spinal_Nerve_Root is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009632 name: root of cervical nerve namespace: uberon synonym: "cervical neural root" EXACT [FMA:16422] synonym: "cervical spinal root" EXACT [FMA:16422] synonym: "nerve root part of cervical spinal cord" EXACT [NIF:NIF] synonym: "root of cervical spinal nerve" EXACT [FMA:16422] xref: FMA:16422 xref: NIF_GrossAnatomy:birnlex_955 xref: ncithesaurus:Cervical_Spinal_Nerve_Root is_a: UBERON:0009623 ! spinal nerve root relationship: part_of UBERON:0000962 ! cervical nerve [Term] id: UBERON:0009633 name: root of sacral nerve namespace: uberon synonym: "nerve root part of sacral spinal cord" EXACT [NIF:NIF] synonym: "root of sacral spinal nerve" EXACT [FMA:18028] synonym: "sacral neural root" EXACT [FMA:18028] xref: FMA:18028 xref: NIF_GrossAnatomy:birnlex_1518 xref: ncithesaurus:Sacral_Spinal_Nerve_Root is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009634 name: root of coccygeal nerve namespace: uberon synonym: "coccygeal neural root" EXACT [FMA:18131] synonym: "coccygeal spinal nerve root" EXACT [FMA:18131] synonym: "root of coccygeal spinal nerve" EXACT [FMA:18131] xref: FMA:18131 is_a: UBERON:0009623 ! spinal nerve root [Term] id: UBERON:0009635 name: parachordal cartilage namespace: uberon def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [ISBN10:1588903958, UBERON:cjm] synonym: "parachordal cartilages" EXACT PLURAL [ZFA:0001423] xref: TAO:0001423 xref: ZFA:0001423 xref: ncithesaurus:Parachordal_Cartilage is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0003110 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! otic region relationship: part_of UBERON:0005902 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! occipital region [Term] id: UBERON:0009636 name: prechordal cartilage namespace: uberon def: "Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid." [ISBN10:1588903958, UBERON:cjm] is_a: UBERON:0003932 ! chondrocranium cartilage [Term] id: UBERON:0009637 name: alisphenoid center namespace: uberon is_a: UBERON:0004765 ! skeletal element [Term] id: UBERON:0009638 name: orbitosphenoid center namespace: uberon comment: merge with sphenoid lesser wing cartilage condensation? is_a: UBERON:0004765 ! skeletal element [Term] id: UBERON:0009639 name: body of sphenoid namespace: uberon def: "The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum." [Wikipedia:Body_of_sphenoid_bone] synonym: "body of sphenoidal bone" EXACT [FMA:52867] synonym: "central body of sphenoid" EXACT [FMA:52867] synonym: "corpus (os sphenoidale)" EXACT [FMA:52867] synonym: "sphenoid body" EXACT [FMA:52867] xref: FMA:52867 is_a: UBERON:0001474 ! bone is_a: UBERON:0003465 ! chondrocranium bone relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0002517 ! basicranium [Term] id: UBERON:0009640 name: hypophyseal cartilage namespace: uberon def: "forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone" [ISBN10:1588903958] is_a: UBERON:0007844 ! cartilaginous element [Term] id: UBERON:0009641 name: ansa lenticularis namespace: uberon def: "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus." [Wikipedia:Ansa_lenticularis] synonym: "ansa lenticularis in thalamo" EXACT [FMA:TA] synonym: "ansa lenticularis in thalamus" EXACT [FMA:62070] synonym: "ventral peduncle of lateral forebrain bundle" EXACT [FMA:62070] xref: FMA:62070 xref: NIF_GrossAnatomy:nlx_anat_1010011 is_a: UBERON:0002730 ! regional part of thalamus is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0009642 name: mammillothalamic tract namespace: uberon def: "The mammillothalamic fasciculus (mammillothalamic tract, thalamomammillary fasciculus, bundle of Vicq dbAzyr) arises from cells in both the medial and lateral nuclei of the mammillary body and by fibers that are directly continued from the fornix. The Mammillothalamic fasciculus then connects the mammillary body to the dorsal tegmental nuclei, the ventral tegmental nuclei, and the anterior thalamic nucleus" [Wikipedia:Mammillothalamic_fasciculus] synonym: "bundle of vicq d%27azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "bundle of vicq d%e2%80%99azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "fasciculus mammillothalamicus" EXACT [FMA:TA] synonym: "mamillo-thalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "mammillo-thalamic fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "mammillothalamic fasciculus" EXACT [FMA:83849] synonym: "mammillothalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "thalamomammillary fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "vicq d'azyr's bundle" EXACT [FMA:83849] xref: FMA:83849 xref: NIF_GrossAnatomy:nlx_anat_1010016 is_a: UBERON:0007702 ! tract of brain [Term] id: UBERON:0009643 name: central tegmental tract namespace: uberon def: "The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum." [Wikipedia:Central_tegmental_tract] xref: FMA:83850 xref: NIF_GrossAnatomy:nlx_anat_1010012 is_a: UBERON:0007702 ! tract of brain [Term] id: UBERON:0009644 name: trachea non-cartilage connective tissue namespace: uberon xref: MA:0001859 is_a: UBERON:0003571 ! trachea connective tissue [Term] id: UBERON:0009645 name: ampullary gland namespace: uberon def: "fusiform enlargement of the deferent duct, as it passes across the bladder wall, due to proliferation of glandular tissue in the regionally folded mucosa." [http://medical-dictionary.thefreedictionary.com/ampullary+gland] xref: MA:0000400 xref: ncithesaurus:Ampullary_Gland is_a: UBERON:0005399 ! male reproductive gland [Term] id: UBERON:0009646 name: lumbar sympathetic nerve trunk namespace: uberon xref: MA:0001163 xref: ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk is_a: UBERON:0004295 ! sympathetic nerve trunk [Term] id: UBERON:0009647 name: tympanic membrane epithelium namespace: uberon def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)" [PMID:11237469, UBERON:cjm] synonym: "tympanic epithelium" EXACT [MA:0001224] synonym: "tympanic membrane epithelial layer" EXACT [] xref: MA:0001224 xref: SCTID:70839004 xref: ncithesaurus:Tympanic_Epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0010071 ! layer of tympanic membrane disjoint_from: UBERON:0010070 ! intermediate layer of tympanic membrane [Term] id: UBERON:0009648 name: eyelid subcutaneous connective tissue namespace: uberon xref: MA:0001252 xref: ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue is_a: UBERON:0003581 ! eyelid connective tissue [Term] id: UBERON:0009650 name: cortical arch of kidney namespace: uberon synonym: "cortical arch" EXACT [MA:0001650] xref: MA:0001650 xref: ncithesaurus:Cortical_Arch is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002189 ! outer cortex of kidney [Term] id: UBERON:0009651 name: nephron tubule basement membrane namespace: uberon synonym: "renal tubule basement membrane" EXACT [MA:0001680] xref: MA:0001680 xref: ncithesaurus:Renal_Tubule_Basement_Membrane is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005769 ! basement membrane is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001231 ! nephron tubule [Term] id: UBERON:0009652 name: bronchus basement membrane namespace: uberon xref: MA:0001832 xref: ncithesaurus:Bronchus_Basement_Membrane is_a: UBERON:0003592 ! bronchus connective tissue is_a: UBERON:0005769 ! basement membrane [Term] id: UBERON:0009653 name: trachea basement membrane namespace: uberon xref: MA:0001854 xref: ncithesaurus:Trachea_Basement_Membrane is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005769 ! basement membrane relationship: part_of UBERON:0009644 ! trachea non-cartilage connective tissue [Term] id: UBERON:0009654 name: alveolar artery namespace: uberon comment: add child terms xref: MA:0001913 xref: ncithesaurus:Alveolar_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009655 name: auricular artery namespace: uberon comment: add child terms xref: MA:0001918 xref: ncithesaurus:Auricular_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009656 name: frontal artery namespace: uberon is_obsolete: true comment: insufficiently defined xref: MA:0001960 [Term] id: UBERON:0009657 name: labial artery namespace: uberon comment: add child terms xref: MA:0001987 xref: ncithesaurus:Labial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009658 name: pancreatico-duodenal artery namespace: uberon def: "." [Wikipedia:Pancreaticoduodenal_artery] comment: add child terms xref: MA:0002013 xref: ncithesaurus:Pancreatico-Duodenal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009659 name: spermatic artery namespace: uberon comment: add child terms xref: MA:0002040 xref: ncithesaurus:Spermatic_Artery is_a: UBERON:0010192 ! genital artery [Term] id: UBERON:0009660 name: adrenal vein namespace: uberon xref: MA:0002081 xref: ncithesaurus:Adrenal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0009661 name: midbrain nucleus namespace: uberon def: "Nucleus located in the midbrain." [ZFIN:curator] xref: SCTID:279285003 xref: TAO:0002209 xref: ZFA:0001665 is_a: UBERON:0002950 ! regional part of midbrain is_a: UBERON:0006331 ! brainstem nucleus [Term] id: UBERON:0009662 name: hindbrain nucleus namespace: uberon def: "Nucleus located within the hindbrain." [ZFIN:curator] xref: TAO:0002177 xref: ZFA:0001658 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0009663 name: telencephalic nucleus namespace: uberon xref: TAO:0002178 xref: ZFA:0001660 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! regional part of telencephalon [Term] id: UBERON:0009664 name: gut mesentery namespace: uberon xref: EHDAA2:0004566 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0009668 name: ventral mesentery namespace: uberon xref: EHDAA2:0004569 xref: SCTID:361430000 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009664 ! gut mesentery [Term] id: UBERON:0009669 name: embryonic cloacal lumen namespace: uberon xref: EHDAA2:0004586 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0009670 name: rectal lumen namespace: uberon synonym: "lumen of rectum" EXACT [FMA:14598] xref: EHDAA2:0004587 xref: FMA:14598 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0009671 name: nasal fin namespace: uberon def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308] xref: EHDAA2:0004548 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004906 ! ectodermal gut relationship: part_of UBERON:0002424 ! oral epithelium relationship: part_of UBERON:0005384 ! nasal cavity epithelium [Term] id: UBERON:0009672 name: oronasal membrane namespace: uberon def: "The oronasal membrane separates the oral cavity and nasal cavity. In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] comment: split into two? synonym: "bucconasal membrane" EXACT [EHDAA:7840] xref: EHDAA2:0000188 xref: EHDAA:7840 xref: EHDAA:7984 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004906 ! ectodermal gut relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0005384 ! nasal cavity epithelium [Term] id: UBERON:0009673 name: accessory XI nerve cranial component namespace: uberon xref: EHDAA2:0000107 xref: EHDAA:5574 xref: EMAPA:17266 xref: MA:0001089 xref: VHOG:0001174 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0002019 ! spinal accessory nerve [Term] id: UBERON:0009674 name: accessory XI nerve spinal component namespace: uberon xref: EHDAA2:0000108 xref: EHDAA:5576 xref: EMAPA:17160 xref: MA:0001090 xref: VHOG:0001115 is_a: UBERON:0001780 ! spinal nerve relationship: part_of UBERON:0002019 ! spinal accessory nerve [Term] id: UBERON:0009675 name: facial VII nerve chorda tympani branch namespace: uberon xref: EHDAA2:0000490 xref: EHDAA:3719 xref: EMAPA:18217 xref: MA:0001092 xref: VHOG:0001343 is_a: UBERON:0001647 ! facial nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001647 ! facial nerve [Term] id: UBERON:0009676 name: telencephalic vesicle namespace: uberon comment: todo - all vesicles xref: EHDAA2:0001981 xref: EHDAA:1993 xref: EHDAA:2671 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009678 name: tooth row namespace: uberon def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator] synonym: "row of teeth" EXACT [UBERON:cjm] synonym: "tooth rows" EXACT PLURAL [ZFA:0001642] xref: ZFA:0001642 is_a: UBERON:0003672 ! dentition [Term] id: UBERON:0009679 name: set of lower jaw teeth namespace: uberon synonym: "lower jaw teeth" EXACT [EHDAA2:0001029] xref: EHDAA2:0001029 is_a: UBERON:0009678 ! tooth row relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] id: UBERON:0009680 name: set of upper jaw teeth namespace: uberon synonym: "upper jaw teeth" EXACT [EHDAA2:0002129] xref: EHDAA2:0002129 is_a: UBERON:0009678 ! tooth row relationship: part_of UBERON:0003277 ! skeleton of upper jaw [Term] id: UBERON:0009687 name: middle cardiac vein namespace: uberon synonym: "lesser cardiac vein" EXACT [FMA:4713] synonym: "posterior interventricular vein" EXACT [FMA:4713] xref: EHDAA2:0004509 xref: FMA:4713 xref: ncithesaurus:Middle_Cardiac_Vein is_a: UBERON:0004148 ! coronary vein [Term] id: UBERON:0009688 name: posterior inferior cerebellar artery namespace: uberon synonym: "posterior inferior cerebellar artery" EXACT [EHDAA2:0000660] xref: EHDAA2:0000660 xref: FMA:50518 xref: ncithesaurus:Posterior_Inferior_Cerebellar_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: part_of UBERON:0001535 ! vertebral artery [Term] id: UBERON:0009689 name: anterior inferior cerebellar artery namespace: uberon xref: EHDAA2:0000587 xref: FMA:50544 xref: ncithesaurus:Anterior_Inferior_Cerebellar_Artery is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0003472 ! cerebellar artery is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001633 ! basilar artery relationship: part_of UBERON:0003472 ! cerebellar artery [Term] id: UBERON:0009692 name: lumen of pharyngotympanic tube namespace: uberon comment: Editors note: Check relationships for conformance with AAO and XAO synonym: "auditory tube lumen" EXACT [EHDAA2:0004118] synonym: "lumen of auditory tube" EXACT [FMA:60079] synonym: "lumen of eustachian tube" EXACT [FMA:60079] synonym: "pharyngotympanic tube lumen" EXACT [FMA:60079] xref: EHDAA2:0004118 xref: FMA:60079 is_a: UBERON:0005082 ! tube lumen [Term] id: UBERON:0009695 name: epithelium of laryngopharynx namespace: uberon synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454] synonym: "laryngopharynx epithelium" EXACT [FMA:62454] xref: EHDAA2:0004575 xref: FMA:62454 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0001051 ! hypopharynx relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: UBERON:0009697 name: epithelium of appendix namespace: uberon synonym: "appendix epithelium" EXACT [FMA:63581] synonym: "epithelium of vermiform appendix" EXACT [FMA:63581] xref: EHDAA2:0004561 xref: FMA:63581 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001277 ! intestinal epithelium is_a: UBERON:0005636 ! caecum epithelium is_a: UBERON:0007499 ! epithelial sac is_a: UBERON:0009854 ! digestive tract diverticulum relationship: part_of UBERON:0001154 ! appendix relationship: part_of UBERON:0003929 ! gut epithelium relationship: part_of UBERON:0004989 ! mucosa of appendix [Term] id: UBERON:0009708 name: dorsal pancreas namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: EHDAA2:0001371 xref: FMA:79793 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0005177 ! trunk organ relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0009709 name: ventral pancreas namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements xref: EHDAA2:0001393 xref: FMA:79794 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0005177 ! trunk organ relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0009712 name: endocardium of right ventricle namespace: uberon def: "Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk." [FMA:9536] synonym: "right ventricular endocardium" EXACT [FMA:9536] xref: EHDAA2:0002188 xref: FMA:9536 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0001081 ! endocardium of ventricle is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006914 ! squamous epithelium relationship: part_of UBERON:0004706 ! bulbus cordis [Term] id: UBERON:0009713 name: endocardium of left ventricle namespace: uberon def: "Endocardium of ventricle which is continuous with mitral valve , aortic valve, atrioventricular septum and the tunica intima of the aorta." [FMA:9559] synonym: "left ventricular endocardium" EXACT [FMA:9559] xref: EHDAA2:0002182 xref: FMA:9559 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0001081 ! endocardium of ventricle is_a: UBERON:0006914 ! squamous epithelium [Term] id: UBERON:0009714 name: intermaxillary process namespace: uberon xref: EHDAA2:0000868 is_a: UBERON:0009292 ! embryonic nasal process relationship: part_of UBERON:0004066 ! frontonasal prominence [Term] id: UBERON:0009715 name: stomodeal cavity namespace: uberon is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0009716 name: cupular organ namespace: uberon def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [DOI:10.2108/zsj.27.842] comment: Homology: possible homologues of neuromasts in the inner ear (Bone & Ryan, 1978; Wada et al 1998). In the tunicate cupular organ, the sensory cell is a primary neuron sending an axon to the CNS. The sensory cilium is within a deep indentation of the cell and is surrounded by a collar of short microvilli. is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009717 name: coronal organ namespace: uberon def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [DOI:10.1002/jez.b.21013] subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0009720 ! oral siphon [Term] id: UBERON:0009718 name: neurohypophyseal duct namespace: uberon def: "Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians." [DOI:10.1002/jez.b.21013] comment: Homology: candidate homolog for both neural crest and for the combined olfactory and adenohypophyseal placodes (Burighel et al., 2003; Manni et al., 2004a). Development: During formation of the adult ascidian, the ectodermal neurohypophyseal duct fuses with an evagination of the pharynx to form the neural gland rudiment is_a: UBERON:0000058 ! duct property_value: "homologous_to" UBERON:0002196 property_value: "homologous_to" UBERON:0009122 [Term] id: UBERON:0009719 name: siphon namespace: uberon def: "tubular appendage for drawing or ejecting fluids" [] xref: BTO:0002056 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0009720 name: oral siphon namespace: uberon synonym: "branchial siphon" RELATED [] synonym: "pharyngeal siphon" RELATED [] is_a: UBERON:0009719 ! siphon [Term] id: UBERON:0009721 name: atrial siphon namespace: uberon is_a: UBERON:0009719 ! siphon [Term] id: UBERON:0009722 name: entire pharyngeal arch endoderm namespace: uberon synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621] xref: EHDAA2:0004621 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: UBERON:0009731 name: sublaminar layers S3 or S4 namespace: uberon def: "One of sublaminar layers S3 or S4." [GOC:plr] xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009732 name: sublaminar layers S1 or S2 or S5 namespace: uberon def: "One of sublaminar layers S1, S2, or S5." [GOC:plr] xref: CP:0001041 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008926 ! sublaminar layer S5 [Term] id: UBERON:0009733 name: sublaminar layers S1 or S2 or S3 namespace: uberon def: "One of sublaminar layers S1, S2, or S3." [GOC:plr] xref: CP:0001042 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 [Term] id: UBERON:0009734 name: sublaminar layers S2 or S3 or S4 namespace: uberon def: "One of sublaminar layers S2, S3, or S4." [GOC:plr] xref: CP:0001043 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009735 name: sublaminar layers S1 or S3 or S4 namespace: uberon def: "One of sublaminar layers S1, S3, or S4." [GOC:plr] xref: CP:0001044 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009736 name: sublaminar layers S3 or S4 or S5 namespace: uberon def: "One of sublaminar layers S3, S4, or S5." [GOC:plr] xref: CP:0001045 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 [Term] id: UBERON:0009737 name: sublaminar layers S1 or S2 or S3 or S4 namespace: uberon def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr] xref: CP:0001046 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009738 name: border of sublaminar layers S1 and S2 namespace: uberon def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, UBERON:cjm] xref: CP:0001038 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 [Term] id: UBERON:0009739 name: border of sublaminar layers S3 and S4 namespace: uberon def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, UBERON:cjm] xref: CP:0001039 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 [Term] id: UBERON:0009740 name: border between sublaminar layers namespace: uberon def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [UBERON:cjm] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0009741 name: tailbud stage namespace: uberon def: "Any of the developmental stages from Nieuwkoop and Faber stage 20 to stage 44 (feeding), including the beginning of hatching (NF stage 35/36)." [ISBN:0815318960] xref: XAO:1000007 is_a: UBERON:0000068 ! embryo stage [Term] id: UBERON:0009742 name: proamniotic cavity namespace: uberon def: "the cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds" [MP:0011197] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0009743 name: visceral yolk sac cavity namespace: uberon def: "the closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm)" [MP:0011201] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005251 ! yolk sac cavity [Term] id: UBERON:0009744 name: lymph node medullary sinus namespace: uberon def: "the channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels" [MP:0011222] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0002007 ! medulla of lymph node [Term] id: UBERON:0009745 name: lymph node medullary cord namespace: uberon def: "the dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node" [MP:0011224] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002007 ! medulla of lymph node [Term] id: UBERON:0009746 name: head fold namespace: uberon def: "the crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo" [MP:0011257] xref: SCTID:361453004 is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009747 name: tail fold namespace: uberon def: "the crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo" [MP:0011258] xref: SCTID:361439004 is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009748 name: cephalic neural fold namespace: uberon def: "the elevated margins of the neural groove that are located in the future cephalic region of the embryo" [MP:0011259] xref: EMAPA:16090 is_a: UBERON:0005062 ! neural fold [Term] id: UBERON:0009749 name: limb mesenchyme namespace: uberon def: "the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261] synonym: "limb mesoderm" RELATED [Geisha:syn] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003285 ! limb of embryo [Term] id: UBERON:0009750 name: spleen mesenchyme namespace: uberon def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen" [MP:0011263] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0009751 name: cardiac mesenchyme namespace: uberon def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264] comment: Editor note: decide whether to merge with cardiac mesoderm. Check start/end stages xref: EHDAA2:0004162 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0009752 name: pancreas mesenchyme namespace: uberon def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas" [MP:0011265] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! trunk mesenchyme [Term] id: UBERON:0009753 name: adrenal gland cortex zone namespace: uberon synonym: "region of adrenal cortex" RELATED [FMA:69086] xref: FMA:69086 xref: MA:0001887 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0009754 name: blubber namespace: uberon def: "a thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians." [Wikipedia:Blubber] comment: Lipid-rich, collagen fiberblaced blubber comprises the hypodermis and covers the whole body, except for parts of the appendages, strongly attached to the musculature and skeleton by highly organized, fan-shaped networks of tendons and ligaments. It can comprise up to 50% of the body mass of some marine mammals during some points in their lives, and can range from two inches (5 cm) thick in dolphins and smaller whales, to more than 12 inches (30 cm)thick in some bigger whales, such as right and bowhead whales xref: SCTID:83953006 is_a: UBERON:0002190 ! subcutaneous adipose tissue [Term] id: UBERON:0009755 name: spermaceti namespace: uberon def: "wax present in the head cavities of the sperm whale." [Wikipedia:Spermaceti] is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0009756 name: spermaceti organ namespace: uberon subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0000062 ! organ [Term] id: UBERON:0009757 name: ambergris namespace: uberon def: "a biliary secretion of the intestines of the sperm whale." [Wikipedia:Ambergris] is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0009758 name: abdominal ganglion namespace: uberon xref: SCTID:280508003 is_a: UBERON:0007134 ! trunk ganglion [Term] id: UBERON:0009767 name: proximal interphalangeal joint namespace: uberon xref: FMA:65022 is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0009768 name: distal interphalangeal joint namespace: uberon xref: FMA:65024 is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0009769 name: left common cardinal vein namespace: uberon synonym: "common cardinal vein left " EXACT [EHDAA2:0000304] xref: EHDAA2:0000304 xref: FMA:70311 xref: SCTID:361506000 is_a: UBERON:0002064 ! common cardinal vein relationship: part_of UBERON:0004344 ! cardinal vein [Term] id: UBERON:0009770 name: precardinal vein namespace: uberon xref: FMA:70309 is_a: UBERON:0001638 ! vein is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004344 ! cardinal vein [Term] id: UBERON:0009771 name: precardinal vein left namespace: uberon synonym: "left precardinal vein" EXACT [FMA:70313] xref: EHDAA2:0000127 xref: FMA:70313 is_a: UBERON:0009770 ! precardinal vein [Term] id: UBERON:0009772 name: precardinal vein right namespace: uberon synonym: "right precardinal vein" EXACT [FMA:70312] xref: EHDAA2:0004537 xref: FMA:70312 is_a: UBERON:0009770 ! precardinal vein [Term] id: UBERON:0009773 name: renal tubule namespace: uberon def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10] subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "renal tubule (generic)" EXACT [UBERON:cjm] synonym: "tubule of excretory system" EXACT [OBOL:automatic, UBERON:cjm] is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009774 name: embryonic midbrain hindbrain boundary namespace: uberon is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0006238 ! future brain [Term] id: UBERON:0009775 name: lateral medullary reticular complex namespace: uberon synonym: "lateral group of medullary reticular formation" EXACT [FMA:72573] synonym: "lateral medullary reticular group" EXACT [FMA:72573] synonym: "lateral reticular formation of the medulla oblongata" EXACT [FMA:72573] xref: FMA:72573 is_a: UBERON:0002579 ! regional part of medullary reticular formation is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0002559 ! medullary reticular formation [Term] id: UBERON:0009776 name: intermediate reticular formation namespace: uberon xref: TAO:0000219 xref: ZFA:0000219 is_a: UBERON:0002579 ! regional part of medullary reticular formation is_a: UBERON:0003528 ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0009662 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! hindbrain nucleus relationship: part_of UBERON:0002559 ! medullary reticular formation [Term] id: UBERON:0009777 name: intermediate reticular nucleus namespace: uberon xref: ABA:IRN xref: FMA:84336 is_a: UBERON:0002579 ! regional part of medullary reticular formation is_a: UBERON:0007635 ! nucleus of medulla oblongata [Term] id: UBERON:0009778 name: pleural sac namespace: uberon def: "Serous sac, which has as parts the pleura and the pleural cavity. Examples: There are only two canonical instances, right and left pleural sacs." [FMA:9690] xref: FMA:9690 xref: SCTID:361996004 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005906 ! serous sac relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0009779 name: cardiac muscle tissue of right auricle namespace: uberon xref: EMAPA:16826 xref: EMAPA:17324 xref: FMA:84280 is_a: UBERON:0003378 ! cardiac muscle of auricular region [Term] id: UBERON:0009780 name: cardiac muscle tissue of left auricle namespace: uberon xref: EMAPA:16818 xref: EMAPA:17318 xref: FMA:84281 is_a: UBERON:0003378 ! cardiac muscle of auricular region [Term] id: UBERON:0009834 name: dorsolateral prefrontal cortex namespace: uberon def: "The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 b 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas" [Wikipedia:Dorsolateral_prefrontal_cortex] comment: check dorsolateral prefrontal neocortex is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0009835 name: anterior cingulate cortex namespace: uberon def: "the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy[1] and emotion." [Wikipedia:Anterior_cingulate_cortex] xref: BTO:0004249 xref: NIF_GrossAnatomy:birnlex_936 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0009836 name: Fronto-orbital gyrus namespace: uberon synonym: "fronto-orbital gyrus" EXACT [NIF_GrossAnatomy:birnlex_1243] synonym: "orbito-frontal gyrus" EXACT [] synonym: "orbitofrontal gyrus" EXACT [] xref: NIF_GrossAnatomy:birnlex_1243 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0009840 name: lower rhombic lip namespace: uberon def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] synonym: "caudal rhombic lip" EXACT [UBERON:cjm] xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0006215 ! rhombic lip relationship: part_of UBERON:0005507 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 3 relationship: part_of UBERON:0005511 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 4 relationship: part_of UBERON:0005515 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 5 relationship: part_of UBERON:0005519 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 6 relationship: part_of UBERON:0005523 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 7 relationship: part_of UBERON:0005527 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 8 relationship: part_of UBERON:0005569 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! rhombomere 2 [Term] id: UBERON:0009841 name: upper rhombic lip namespace: uberon def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator] synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rostral rhombic lip" EXACT [DHB:URL] xref: TAO:0001442 xref: ZFA:0001442 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0005499 ! rhombomere 1 relationship: part_of UBERON:0006215 ! rhombic lip [Term] id: UBERON:0009842 name: acinus namespace: uberon def: "An acinus refers to any cluster of cells that resembles a many-lobed \"berry,\" such as a raspberry (acinus is Latin for berry). The berry-shaped termination of an exocrine gland, where the secretion is produced is acinar in form, as is the alveolar sac containing multiple alveoli in the lungs." [Wikipedia:Acinus] synonym: "acini" RELATED PLURAL [Wikipedia:Acinus] synonym: "glandular acinus" RELATED [] xref: FMA:55588 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0009843 name: prostate epithelial cord namespace: uberon def: "A solid cord of prostate epithelium." [GO:0060527, OBOL:automatic, PMID:18977204] comment: Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204] synonym: "cord of prostate epithelium" EXACT [PMID:18977204] synonym: "epithelial cord of prostate" EXACT [] is_a: UBERON:0000428 ! prostate epithelium is_a: UBERON:0005154 ! epithelial cord [Term] id: UBERON:0009844 name: urogenital sinus lumen namespace: uberon xref: EHDAA2:0002142 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0009845 name: urogenital sinus mesenchyme namespace: uberon comment: Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth synonym: "UGM" EXACT [PMID:18977204] xref: EHDAA2:0004061 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0009503 ! associated mesenchyme of hindgut [Term] id: UBERON:0009846 name: embryonic cloacal epithelium namespace: uberon synonym: "cloacal epithelium" EXACT [EHDAA2:0004585] xref: EHDAA2:0004585 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003353 ! epithelium of hindgut is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003929 ! gut epithelium [Term] id: UBERON:0009847 name: prostate field namespace: uberon def: "a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, PMID:18977204] synonym: "prostate primordium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004902 ! urogenital sinus epithelium is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004902 ! urogenital sinus epithelium [Term] id: UBERON:0009848 name: zona limitans intrathalamica namespace: uberon def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, GO_REF:0000021, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] synonym: "ZLI" EXACT [GO:0022006] xref: ZFA:0001344 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001897 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! thalamus [Term] id: UBERON:0009849 name: tadpole stage namespace: uberon def: "wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [ISBN:0471209627, ISSN:0003-276X, Wikipedia:Tadpole] xref: XAO:1000008 is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0009850 name: nematode larva namespace: uberon is_a: UBERON:0002548 ! larva [Term] id: UBERON:0009851 name: border of sublaminar layers S4 and S5 namespace: uberon def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0009852 name: border of sublaminar layers S2 and S3 namespace: uberon def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0009853 name: body of uterus namespace: uberon def: "that part of the uterus above the isthmus and below the orifices of the uterine tubes." [http://medical-dictionary.thefreedictionary.com/corpus+uteri] synonym: "corpus uteri" EXACT [UBERON:cjm] synonym: "uterine body" EXACT [FMA:17739] synonym: "uterine corpus" EXACT [FMA:17739] xref: FMA:17739 xref: ncithesaurus:Corpus_Uteri is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0009854 name: digestive tract diverticulum namespace: uberon def: "Branch or outpocketing of the digestive tract." [UBERON:cjm] synonym: "diverticulum of gut" RELATED [FBbt:00100316] synonym: "intestinal pouch" RELATED [] xref: FBbt:00100316 is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0009856 ! sac [Term] id: UBERON:0009855 name: echinoderm gastric caecum namespace: uberon def: "non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer." [PMID:20955602] comment: The digestive tract of many metazoan invertebrates is characterized by the presence of caeca or diverticula that serve secretory and/or absorptive functions. With the development of various feeding habits, distinctive digestive organs may be present in certain taxa. This also holds true for sea urchins (Echinodermata: Echinoidea), in which a highly specialized gastric caecum can be found in members of a derived subgroup, the Irregularia (cake urchins, sea biscuits, sand dollars, heart urchins, and related forms)... Homologous with the more or less pronounced dilation of the anterior stomach that is observed in most \"regular\" sea urchin taxa[PMID:20955602] is_a: UBERON:0009854 ! digestive tract diverticulum [Term] id: UBERON:0009856 name: sac namespace: uberon synonym: "diverticulum" RELATED [] synonym: "pouch" EXACT [] is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0009857 name: cavum septum pellucidum namespace: uberon def: "Space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum. In humans, present in 100% of fetuses, but over 85% of them fuse by 3b6 months after birth." [BTO:0003447, Wikipedia:Cave_of_septum_pellucidum] synonym: "cave of septum pellucidum" EXACT [FMA:61874] synonym: "cavum of septum pellucidum" EXACT [FMA:61874] synonym: "cavum septi pellucidi" RELATED [Wikipedia:Cave_of_septum_pellucidum] synonym: "fifth ventricle" RELATED [FMA:61874, Wikipedia:Cave_of_septum_pellucidum] synonym: "septum pellucidum cave" EXACT [FMA:61874] synonym: "ventriculus septi pellucidi" EXACT [FMA:61874] xref: BTO:0003447 xref: FMA:61874 xref: SCTID:180933005 xref: ncithesaurus:Fifth_Ventricle is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0009858 name: outer fibrous layer of periosteum namespace: uberon synonym: "capsular layer of periosteum" EXACT [FMA:234354] synonym: "fibrous layer of periosteum" EXACT [FMA:234354] synonym: "outer fibrous layer of periosteum" EXACT [FMA:234354] xref: FMA:234354 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0009859 name: endosteum namespace: uberon def: "a thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones" [Wikipedia:Endosteum] xref: FMA:32692 xref: SCTID:57487002 xref: ncithesaurus:Endosteum is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0009860 name: ascidian digestive gland namespace: uberon xref: ANISEED:1239655 is_a: UBERON:0006925 ! digestive gland [Term] id: UBERON:0009861 name: ascidian neural complex namespace: uberon def: "." [PMID:21558186] is_a: UBERON:0002530 ! gland [Term] id: UBERON:0009862 name: ascidian cerebral ganglion namespace: uberon comment: the CG appears to be a diencephalic brain. It originates mainly from the posterior sensory vesicle (Takamura 2002; Dufour et al. 2006) and shows endocrine activity. For examples, ascidian genes orthologous to GnRH and OT/VP, which are secreted from the hypothalamus and the NH, respectively, in vertebrates, are expressed in the cortex of the CG, suggesting that the NC is not distinctly compartmentalized as are vertebrate brains (Tsutsui et al. 1998; Kavanaugh et al. 2005; Kawada et al. 2008; Ukena et al. 2008; Kawada et al. 2009). Moreover, PC2 expression in the cortex of the CG supports possible endocrine activity (Sekiguchi et al. 2007). is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009863 name: ascidian ciliated funnel namespace: uberon is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009864 name: ascidian neural gland namespace: uberon comment: assumed to be a pituitary homolog. Current data from the Ciona genome suggests that the ascidian NC, including the CF, is unlikely to be a pituitary-like endocrine gland, while it is necessary to examine other ascidians before drawing a final conclusion [PMID:21558186] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009861 ! ascidian neural complex property_value: "homologous_to" UBERON:0002196 [Term] id: UBERON:0009865 name: Hatschek's pit namespace: uberon def: "a deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [Wikipedia:Hatschek's_pit] is_a: UBERON:0006846 ! groove property_value: "homologous_to" UBERON:0002196 [Term] id: UBERON:0009866 name: Hatschek's nephridium namespace: uberon def: "an unpaired kidney whose duct opens into the anterior pharynx. It can be seen as a deep ciliated fossa on the dorsal midline of the buccal cavity (mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [] subset: organ_slim ! organs, excluding individual muscles and skeletal elements is_a: UBERON:0000062 ! organ is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009867 name: Hatschek's diverticulum namespace: uberon is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0009868 name: Hatschek's left diverticulum namespace: uberon is_a: UBERON:0009867 ! Hatschek's diverticulum [Term] id: UBERON:0009869 name: Hatschek's right diverticulum namespace: uberon is_a: UBERON:0009867 ! Hatschek's diverticulum [Term] id: UBERON:0009870 name: zone of stomach namespace: uberon def: "A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland." [ISBN10:0073040584, Wikipedia:Stomach#Sections] comment: Editor notes: We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach synonym: "gastric zone" EXACT [FMA:14558] synonym: "region of stomach" EXACT [] synonym: "section of stomach" EXACT [] xref: FMA:14558 xref: SCTID:245415005 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Regions_of_stomach.svg/500px-Regions_of_stomach.svg.png is_a: UBERON:0000064 ! organ part is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0009871 name: nephrogenic zone namespace: uberon def: "outer portion of the renal cortex. Site of formation of medullary and cortical elements." [] comment: Taxon notes: see PMID:12761251 for description of nephrogenic zone in dogfish. synonym: "nephrogenic tissue" RELATED [] xref: EMAPA:27721 xref: MA:0002996 xref: http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009872 name: paired appendage namespace: uberon xref: VAO:0000067 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0009875 name: pectoral appendage namespace: uberon xref: VAO:0000125 is_a: UBERON:0009872 ! paired appendage [Term] id: UBERON:0009876 name: pelvic appendage namespace: uberon xref: VAO:0000126 is_a: UBERON:0009872 ! paired appendage [Term] id: UBERON:0009877 name: metapodium namespace: uberon def: "A distal segment of the limb, including either the metacarpal or the metatarsal elements" [MA:th] is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0009878 name: mesopodium skeleton namespace: uberon is_a: UBERON:0006717 ! skeleton of autopod [Term] id: UBERON:0009879 name: tarsal skeleton namespace: uberon def: "the cluster of bones in the foot between the tibia and fibula and the metatarsus. The bones of the tarsus do not belong to individual toes, whereas those of the metatarsus do. The joint between the tibia and fibula and the tarsus is referred to as the ankle joint[WP]." [Wikipedia:Tarsus_(skeleton)] synonym: "tarsus" RELATED [XAO:0003211] xref: SCTID:264228001 xref: XAO:0003211 is_a: UBERON:0001445 ! skeleton of foot is_a: UBERON:0009878 ! mesopodium skeleton relationship: part_of UBERON:0001445 ! skeleton of foot [Term] id: UBERON:0009880 name: carpal skeleton namespace: uberon def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpus] comment: The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone[14] [Wikipedia:Carpus#Evolutionary_variations] xref: XAO:0003207 is_a: UBERON:0001442 ! skeleton of hand is_a: UBERON:0009878 ! mesopodium skeleton is_a: UBERON:0001474 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! bone relationship: part_of UBERON:0001442 ! skeleton of hand [Term] id: UBERON:0009881 name: anterior lateral plate mesoderm namespace: uberon synonym: "ALPM" EXACT [ZFA:0005041] xref: TAO:0005041 xref: ZFA:0005041 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0009882 name: anal column namespace: uberon def: "One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal. They are named after Giovanni Battista Morgagni who also has several other eponyms named after himself[WP]" [Wikipedia:Anal_columns] synonym: "column of Morgagni" EXACT [FMA:15713] xref: FMA:15713 xref: SCTID:245444007 xref: ncithesaurus:Anal_Column is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0009883 name: medullary ray namespace: uberon def: "A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla." [MP:0011347, Wikipedia:Medullary_ray_(anatomy)] comment: Termonology notes: Their name is potentially misleading -- the \"medullary\" refers to their destination, not their location. They are located only in the renal cortex, and not in the renal medulla. AO notes: FMA says parenchyma, MP says cortex synonym: "Ferrein's pyramid" EXACT [MP:0011347] synonym: "kidney medullary ray" EXACT [MP:0011347] synonym: "renal medullary ray" EXACT [MP:0011347] xref: BTO:0001155 xref: FMA:74299 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0009885 name: interlobar artery namespace: uberon def: "One of a set of curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Interlobar_arteries] comment: FMA only has the set term synonym: "arteriae interlobares renis" EXACT PLURAL [FMA:TA] synonym: "interlobar artery of kidney" EXACT [FMA:71637] synonym: "kidney interlobar artery" EXACT [] synonym: "renal interlobar artery" EXACT [MP:0011355] xref: FMA:71637 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0009887 name: interlobar vein namespace: uberon def: "The interlobar veins are veins of the renal circulation which drain the renal lobes." [Wikipedia:Interlobar_veins] comment: FMA only has the set term synonym: "interlobar vein of kidney" EXACT [FMA:71631] synonym: "venae interlobares renis" EXACT PLURAL [FMA:TA] xref: FMA:71631 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0009888 name: Koller's sickle namespace: uberon def: "a local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast" [PMID:9693154, Wikipedia:Koller's_sickle] subset: early_development ! A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. synonym: "Kohler's sickle" EXACT [] is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0009889 name: secondary heart field namespace: uberon def: "extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract." [PMID:17276708] comment: Taxon notes: \"In general, the two studies in chick concluded that the contribution of the SHF was to the outflow tract, whereas the mouse work suggested that the second lineage contributed more broadly to the heart, including the outflow tract and much or all of the right ventricle [11b14]. These different conclusions may represent differences in the experimental approaches used or may represent bona fide differences in the contribution of the second lineage to the hearts of birds compared to mammals [11]. Alternatively, the secondary/anterior heart fields described in the chick may represent a subset of a broader field that makes a more substantial contribution to the heart, as the mouse studies suggested\" [PMID:17276708] synonym: "SHF" RELATED [XAO:0004186] synonym: "anterior heart field" EXACT [PMID:17276708] synonym: "anterior/second heart field" EXACT [Geisha:syn] synonym: "second heart field" EXACT [XAO:0004186] xref: XAO:0004186 is_a: UBERON:0000479 ! tissue is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0009890 name: anterior intestinal portal namespace: uberon def: "opening of the foregut into the midgut" [http://www.drugs.com/dict/fovea-cardiaca.html] synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html] is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0009891 name: facial mesenchyme namespace: uberon synonym: "face mesenchyme" EXACT [] synonym: "mesenchyme of face" EXACT [] is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0009892 name: ascidian anterior sensory vesicle namespace: uberon xref: ANISEED:777309 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009893 name: ascidian ocellus namespace: uberon xref: ANISEED:874489 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0009892 ! ascidian anterior sensory vesicle [Term] id: UBERON:0009894 name: siphon primordium namespace: uberon xref: ANISEED:1210451 is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0009895 name: atrial siphon primordia namespace: uberon xref: ANISEED:1210456 is_a: UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009896 name: oral siphon primordia namespace: uberon xref: ANISEED:1225922 is_a: UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009897 name: right auditory cortex namespace: uberon xref: FMA:242654 is_a: UBERON:0001393 ! auditory cortex [Term] id: UBERON:0009898 name: left auditory cortex namespace: uberon xref: FMA:242656 is_a: UBERON:0001393 ! auditory cortex [Term] id: UBERON:0009899 name: pole of cerebral hemisphere namespace: uberon def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [Wikipedia:Poles_of_cerebral_hemispheres] is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0009906 name: root of optic nerve namespace: uberon comment: TODO - check. See comments for optic tract. FMA also has medial root. synonym: "optic nerve root" EXACT [NIF_GrossAnatomy:birnlex_1328] synonym: "optic tract root" EXACT [FMA:84573] synonym: "root of optic tract" EXACT [FMA:84573] xref: FMA:84573 xref: NIF_GrossAnatomy:birnlex_1328 is_a: UBERON:0006843 ! root of cranial nerve [Term] id: UBERON:0009907 name: sensory root of trigeminal nerve namespace: uberon synonym: "radix sensoria (nervus trigeminus [v])" EXACT [FMA:52611] xref: FMA:52611 xref: SCTID:280188009 is_a: UBERON:0004673 ! trigeminal nerve root [Term] id: UBERON:0009908 name: caudal root of abducens nerve namespace: uberon synonym: "radix caudalis nervi abducentis" EXACT [ZFA:0000179] xref: TAO:0000179 xref: ZFA:0000179 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0002786 ! abducens nerve fibers is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: part_of UBERON:0001646 ! abducens nerve relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0009909 name: rostral root of abducens nerve namespace: uberon xref: ZFA:0000665 is_a: UBERON:0002678 ! regional part of medulla oblongata is_a: UBERON:0002786 ! abducens nerve fibers is_a: UBERON:0004733 ! segmental subdivision of hindbrain relationship: part_of UBERON:0001646 ! abducens nerve relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0009910 name: posterior lateral plate mesoderm namespace: uberon synonym: "PLPM" EXACT [ZFA:0005042] xref: TAO:0005042 xref: ZFA:0005042 is_a: UBERON:0000926 ! mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0009911 name: lobule namespace: uberon xref: FMA:45737 xref: ncithesaurus:Lobule is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0009912 name: anatomical lobe namespace: uberon xref: FMA:45728 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0009913 name: renal lobe namespace: uberon def: "the portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it; human kidneys have multilobar (multipyramidal) architecture while mice and rats have unilobar (unipyramidal) kidneys[MP]. It is composed of many renal lobules[WP]." [MP:0011381, Wikipedia:Renal_lobe] comment: Edtor note: todo - add has_part relationships synonym: "kidney lobe" EXACT [MP:0011381] synonym: "lobi renalis" EXACT PLURAL [Wikipedia:Renal_lobe] synonym: "lobus renalis" EXACT [http://www.mondofacto.com/facts/dictionary?lobus+renalis] xref: FMA:17881 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0009912 ! anatomical lobe [Term] id: UBERON:0009914 name: renal lobule namespace: uberon def: "the portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys" [MP:0011382, Wikipedia:Cortical_lobule] comment: Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis synonym: "cortical lobule" RELATED [MP:0011382, Wikipedia:Cortical_lobule] synonym: "cortical lobule of kidney" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "kidney lobule" EXACT [MP:0011382] synonym: "lobulus corticalis renalis" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "lobulus renalis" RELATED [] synonym: "renal cortical lobule" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "renculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "reniculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] synonym: "renunculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] xref: FMA:17670 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0009911 ! lobule relationship: part_of UBERON:0009913 ! renal lobe [Term] id: UBERON:0009916 name: wall of ureter namespace: uberon synonym: "ureteral wall" EXACT [FMA:15888] xref: FMA:15888 xref: SCTID:279397004 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0009917 name: kidney corticomedullary boundary namespace: uberon def: "the region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary" [MP:0011376] xref: NEW_MP:0011376 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009918 name: retrotrapezoid nucleus namespace: uberon def: "the loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain" [MP:0011406] xref: NEW_MP:0011406 is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0009919 name: ureter smooth muscle namespace: uberon def: "the smooth muscle tissue surrounding the epithelium of the ureter" [MP:0011426] synonym: "ureteral smooth muscle" EXACT [NEW_MP:0011426] synonym: "ureteral smooth muscle layer" EXACT [EMAPA:28844] xref: EMAPA:28844 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0006855 ! ureter muscle layer [Term] id: UBERON:0009920 name: optic neural crest namespace: uberon xref: EHDAA2:0001315 xref: EHDAA:1122 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007530 ! migrating mesenchyme population relationship: part_of UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: UBERON:0009921 name: hypophyseal tube namespace: uberon is_a: UBERON:0000025 ! tube [Term] id: UBERON:0009948 name: clavicular air sac namespace: uberon xref: SCTID:2574004 is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009949 name: humeral diverticulum of clavicular air sac namespace: uberon xref: SCTID:2574004 is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009950 name: olfactory bulb plexiform layer namespace: uberon comment: check if the NIF class is actually a grouping class synonym: "plexiform layer" BROAD [NIF_GrossAnatomy:nlx_anat_20090405] xref: NIF_GrossAnatomy:nlx_anat_20090405 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: UBERON:0009951 name: main olfactory bulb namespace: uberon def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb] xref: ABA:MOB is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002264 ! olfactory bulb property_value: "spatially_disjoint_from" UBERON:0002266 property_value: "spatially_disjoint_from" UBERON:0002590 property_value: "spatially_disjoint_from" UBERON:0002893 property_value: "spatially_disjoint_from" UBERON:0004069 [Term] id: UBERON:0009952 name: subgranular zone namespace: uberon def: "a narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs. " [Wikipedia:Subgranular_zone] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Doublecortin_expression-2.png/600px-Doublecortin_expression-2.png is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0009953 name: post-embryonic organism namespace: uberon synonym: "post-natal organism" NARROW [UBERON:cjm] xref: MA:0002405 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0009954 name: vomeronasal system namespace: uberon def: "a vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants" [] comment: Editor note: check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES] is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0005725 ! olfactory system [Term] id: UBERON:0009955 name: neurogenic placode namespace: uberon def: "Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309] synonym: "neurogenic placodes" EXACT PLURAL [ZFA:0001309] xref: TAO:0001309 xref: ZFA:0001309 is_a: UBERON:0002546 ! cranial placode relationship: develops_from UBERON:0005497 {gci_relation="part_of",gci_filler="NCBITaxon:7954"} ! non-neural ectoderm [Term] id: UBERON:0009956 name: corpuscle of de Quatrefage namespace: uberon def: "A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve." [PMID:11523831] synonym: "organ of de Quatrefage" EXACT [] is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009957 name: ciliated pit namespace: uberon comment: Development: joins with Hatschekbs diverticulum to form Hatschekbs pit in the adult. Location: anterior to the mouth. synonym: "pre-oral pit" RELATED [] is_a: UBERON:0006846 ! groove [Term] id: UBERON:0009958 name: bladder lumen namespace: uberon synonym: "bladder cavity" EXACT [FMA:15924] synonym: "lumen of urinary bladder" EXACT [FMA:15924] synonym: "urinary bladder lumen" EXACT [FMA:15924] xref: EHDAA2:0004058 xref: FMA:15924 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0009959 name: lumen of oropharynx namespace: uberon synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556] synonym: "oropharynx lumen" EXACT [FMA:55095] xref: EHDAA2:0004556 xref: FMA:55095 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0009960 name: esophagus smooth muscle circular layer namespace: uberon synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574] xref: FMA:67605 xref: MA:0001574 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006660 ! muscle layer relationship: part_of UBERON:0002112 ! smooth muscle of esophagus relationship: part_of UBERON:0003832 ! esophagus muscle [Term] id: UBERON:0009961 name: esophagus smooth muscle longitudinal layer namespace: uberon synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575] synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573] xref: FMA:63573 xref: MA:0001575 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006660 ! muscle layer relationship: part_of UBERON:0002112 ! smooth muscle of esophagus relationship: part_of UBERON:0003832 ! esophagus muscle [Term] id: UBERON:0009962 name: excretory gland namespace: uberon def: "A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland." [Dorlands_Medical_Dictionary:MerckSource] comment: todo - child terms xref: BTO:0000431 is_a: UBERON:0002530 ! gland is_a: UBERON:0006554 ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009963 name: antennal gland namespace: uberon def: "Excretory gland situated in the basal article of the antennal peduncle. It functions to rehulate ionic balance" [BTO:0000075, UBERON:cjm] comment: Editor note: consider also classifying this as a renal tubule - or separate terms for coiled/nephridial canal. Editor note: cede this term to Arthropod AO synonym: "green gland" EXACT [] xref: BTO:0000075 is_a: UBERON:0009962 ! excretory gland relationship: part_of UBERON:0000972 ! antenna [Term] id: UBERON:0009964 name: crustacean maxillary gland namespace: uberon def: "Excretory organ in maxillary segment with duct opening on maxilla." [http://crustacea.nhm.org/glossary/define.html] comment: Taxon notes: consider generalizing to include millipedes, centipedes. Function: Two different excretory organs are found among crustaceans: the antennal gland and the maxillary gland. Both have the same basic structure: an end sac and a convoluted duct that may expand into a bladder before opening to the outside. In most adult crustaceans only one or the other gland functions. The functional gland may change during the life cycle. Terminology note: http://crustacea.nhm.org/glossary/define.html?termID=327 suggests green gland as the generic term and antennal as the decapoda term. Editor note: cede this term to Arthropod AO is_a: UBERON:0009962 ! excretory gland [Term] id: UBERON:0009965 name: coxal gland namespace: uberon def: "a gland found in some arthropods, for collecting and excreting urine. The gland comprises an end sac (saccule), a long duct (labyrinth) and a terminal bladder (reservoir). There is generally only one pair (two in some spiders), and they open on the coxae of the walking legs[WP]." [Wikipedia:Coxal_gland] comment: Taxon notes: They are found in all arachnids (with the exception of some Acari), and in other chelicerates, such as horseshoe crabs. Homology: The coxal gland is thought to be homologous with the antennal gland of crustaceans. Editor note: cede this term to Arthropod AO xref: SPD:0000116 xref: TADS:0000080 is_a: UBERON:0009962 ! excretory gland property_value: "homologous_to" UBERON:0009963 [Term] id: UBERON:0009966 name: internodal tract namespace: uberon def: "Subdivision of conducting systemof heart which consists of the anterior, middle and posterior internodal tracts beneath the endocardium of interatrial septum and above the attachment of the septal leaflet of tricuspid valve." [FMA:9479] comment: evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial[http://www.cvphysiology.com/Arrhythmias/A003.htm]. Editor note: include 3 subtypes? synonym: "interatrial conduction tract" EXACT [] synonym: "internodal conduction tract" EXACT [] synonym: "internodal fasciculus" EXACT [FMA:9479] synonym: "internodal tract muscle tissue" EXACT [FMA:9479] xref: FMA:9479 is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0009967 name: spleen venous sinus namespace: uberon comment: See comments for UBERON:0003910 synonym: "sinus lienalis" EXACT [FMA:TA] synonym: "sinus splenicus" EXACT [FMA:TA] synonym: "splenic sinus" EXACT [FMA:62815] synonym: "venous sinus of red pulp of spleen" EXACT [FMA:62815] xref: FMA:62815 xref: MA:0000761 xref: ncithesaurus:Splenic_Sinus is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! abdomen blood vessel is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006615 ! venous sinus relationship: part_of UBERON:0001250 ! red pulp of spleen [Term] id: UBERON:0009968 name: primitive superior sagittal sinus namespace: uberon xref: EHDAA2:0001527 xref: EHDAA:9876 xref: EMAPA:18636 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0009969 name: stato-acoustic epithelium namespace: uberon comment: Editor note: required by CL xref: FMA:64804 is_a: UBERON:0006934 ! sensory epithelium [Term] id: UBERON:0009970 name: epithelium of pancreatic duct namespace: uberon comment: Editor note: in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them equivalent to this synonym: "pancreatic duct epithelium" EXACT [FMA:67681] synonym: "pancreatic ductal epithelium" EXACT [FMA:67681] xref: FMA:67681 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0009971 name: principal gastric gland namespace: uberon def: "one of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]." [MP:0003892, http://www.drugs.com/dict/acid-gland.html] comment: AO notes: FMA has this as part of both the fundus and the body, but these are largely spatially disjoint. synonym: "Wassman gland" RELATED [MP:0003892] synonym: "acid gland" EXACT [http://www.drugs.com/dict/acid-gland.html] synonym: "gastric follicle" RELATED [MP:0003892] synonym: "gastric gland" BROAD [MP:0003892] synonym: "glandula gastrica propria" EXACT [FMA:14921] synonym: "main gastric gland" EXACT [FMA:14921] synonym: "oxyntic gland" EXACT [FMA:14921] xref: FMA:14921 xref: FMA:14923 is_a: UBERON:0000325 ! gastric gland [Term] id: UBERON:0009972 name: ureteropelvic junction namespace: uberon def: "the junction between the ureter and the renal pelvis of the kidney" [MP:0011487] synonym: "pelviureteric junction" EXACT [FMA:15898] xref: FMA:15898 is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009973 name: ureterovesical junction namespace: uberon def: "the valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney" [MP:0011488] xref: FMA:15899 is_a: UBERON:0003978 ! valve is_a: UBERON:0006554 ! urinary system structure is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009974 name: lumen of Rathke's pouch namespace: uberon synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138] synonym: "adenohypophysis invagination" NARROW [EHDAA2:0004139] xref: EHDAA2:0004138 xref: EHDAA2:0004139 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0005082 ! tube lumen [Term] id: UBERON:0009975 name: remnant of lumen of Rathke's pouch namespace: uberon is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0009976 name: hypothalamo-hypophyseal system namespace: uberon def: "A neuroendocrine system of neurons, fiber tracts, endocrine tissue, and blood vessels which produces and releases pituitary hormones into the systemic circulation." [MESH:A.06.407.747.357, Wikipedia:Hypophyseal_portal_system] comment: Editor notes: todo - check the meaning of the FMA term. Function notes: One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). The hypothalamus is responsible for certain metabolic processes and other activities of the autonomic nervous system. It synthesizes and secretes certain neurohormones, often called hypothalamic-releasing hormones, and these in turn stimulate or inhibit the secretion of pituitary hormones. The hypothalamus controls body temperature, hunger, thirst, fatigue, sleep, and circadian cycles[WP] synonym: "hypophyseal portal system" EXACT [Wikipedia:Hypophyseal_portal_system] synonym: "hypothalamo hypophyseal system" RELATED [MESH:A.06.407.747.357] synonym: "hypothalamo-hypophyseal system" RELATED [MESH:A.06.407.747.357] synonym: "venae portales hypophysiales" EXACT [Wikipedia:Hypophyseal_portal_system] xref: FMA:70860 xref: MESH:A.06.407.747.357 is_a: UBERON:0001898 ! hypothalamus is_a: UBERON:0003714 ! neural tissue relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0009977 name: natal tooth namespace: uberon def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)" [MESH:A.14.254.860.700.500] synonym: "natal teeth" EXACT PLURAL [GAID:1267] synonym: "natal tooth" RELATED [GAID:1267] xref: GAID:1267 xref: MESH:A.14.254.860.700.500 is_a: UBERON:0007115 ! deciduous tooth [Term] id: UBERON:0009978 name: epicondyle namespace: uberon def: "." [Wikipedia:Epicondyle] xref: FMA:75435 xref: SCTID:333209006 xref: ncithesaurus:Epicondyle is_a: UBERON:0005913 ! zone of bone organ [Term] id: UBERON:0009979 name: condyle namespace: uberon def: "the round prominence at the end of a bone, most often part of a joint - an articulation with another bone[WP]." [Wikipedia:Condyle_(anatomy)] xref: FMA:75434 xref: SCTID:91737009 xref: ncithesaurus:Condyle is_a: UBERON:0005913 ! zone of bone organ [Term] id: UBERON:0009980 name: condyle of femur namespace: uberon synonym: "condylus femoralis" EXACT [] synonym: "condylus femoris" EXACT [] synonym: "femoral condyle" EXACT [] synonym: "fibular condyle" RELATED [AAO:0000900] xref: AAO:0000900 xref: FMA:32855 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle [Term] id: UBERON:0009984 name: medial condyle of femur namespace: uberon def: "The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the \"medial epicondyle\" and can be palpated by running fingers medially from the patella with the knee in flexion." [Wikipedia:Medial_condyle_of_femur] synonym: "c. medialis femoris" RELATED [Wikipedia:Medial_condyle_of_femur] synonym: "medial condyle of the femur" RELATED [Wikipedia:Medial_condyle_of_femur] xref: FMA:32858 xref: SCTID:182056007 is_a: UBERON:0009980 ! condyle of femur relationship: part_of UBERON:0004406 ! distal epiphysis of femur [Term] id: UBERON:0009985 name: lateral condyle of femur namespace: uberon def: "The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters" [Wikipedia:Lateral_condyle_of_femur] synonym: "c. lateralis femoris" RELATED [Wikipedia:Lateral_condyle_of_femur] synonym: "lateral condyle of the femur" RELATED [Wikipedia:Lateral_condyle_of_femur] xref: FMA:32859 xref: SCTID:182057003 is_a: UBERON:0009980 ! condyle of femur relationship: part_of UBERON:0004406 ! distal epiphysis of femur [Term] id: UBERON:0009986 name: lateral epicondyle of femur namespace: uberon def: "The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle." [Wikipedia:Lateral_epicondyle_of_the_femur] synonym: "epicondylus lateralis (femur)" EXACT [FMA:32867] synonym: "lateral femoral epicondyle" RELATED [Wikipedia:Lateral_epicondyle_of_the_femur] xref: FMA:32867 xref: SCTID:209275007 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 ! epicondyle relationship: part_of UBERON:0004406 ! distal epiphysis of femur relationship: part_of UBERON:0009985 ! lateral condyle of femur [Term] id: UBERON:0009987 name: medial epicondyle of femur namespace: uberon def: "The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or \"tendinous insertion\", of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius." [Wikipedia:Medial_epicondyle_of_the_femur] synonym: "epicondylus medialis (femur)" EXACT [FMA:32864] synonym: "medial femoral epicondyle" RELATED [Wikipedia:Medial_epicondyle_of_the_femur] xref: FMA:32864 xref: SCTID:209172001 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 ! epicondyle relationship: part_of UBERON:0004406 ! distal epiphysis of femur relationship: part_of UBERON:0009984 ! medial condyle of femur [Term] id: UBERON:0009988 name: condyle of humerus namespace: uberon def: "the distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae" [http://www.medilexicon.com/medicaldictionary.php?t=19715] synonym: "condylus humeri" EXACT [] xref: FMA:23377 xref: SCTID:361778001 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle [Term] id: UBERON:0009989 name: condyle of tibia namespace: uberon def: "One of the lateral or medial condyles of the tibia." [Wikipedia:Tibial_condyle] synonym: "tibial condyle" EXACT [AAO:0000899] xref: AAO:0000899 xref: SCTID:182062002 is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle [Term] id: UBERON:0009990 name: medial condyle of tibia namespace: uberon def: "The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]." [Wikipedia:Medial_condyle_of_tibia] synonym: "condylus medialis (tibia)" EXACT [FMA:35445] synonym: "medial condyle of the tibia" RELATED [Wikipedia:Medial_condyle_of_tibia] synonym: "medial tibial condyle" RELATED [Wikipedia:Medial_condyle_of_tibia] xref: FMA:35445 xref: SCTID:182066004 is_a: UBERON:0009989 ! condyle of tibia [Term] id: UBERON:0009991 name: lateral condyle of tibia namespace: uberon def: "The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]." [Wikipedia:Lateral_condyle_of_tibia] synonym: "condylus lateralis (tibia)" EXACT [FMA:35448] xref: FMA:35448 xref: SCTID:182067008 is_a: UBERON:0009989 ! condyle of tibia [Term] id: UBERON:0009992 name: cranial sensory ganglion namespace: uberon def: "the ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons. " [http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion] comment: Editor note: check this - merge into cranial ganglion? WP: the geniculate, petrosal and nodose ganglia, appended respectively to cranial nerves VII, IX and X. Other ontology notes: has no subtypes in FMA synonym: "cranial nerve sensory ganglion" EXACT [FMA:5887] synonym: "ganglion sensorium cranialium" EXACT [FMA:5887] synonym: "sensory ganglion of cranial nerve" EXACT [FMA:5887] xref: FMA:5887 is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 ! sensory ganglion [Term] id: UBERON:0009993 name: primary chorionic villus namespace: uberon def: "A chorionic villus that is a solid outgrowth of the cytotrophoblast that protrudes into the syncytiotrophoblast." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] xref: ncithesaurus:Primary_Chorionic_Villus is_a: UBERON:0007106 ! chorionic villus [Term] id: UBERON:0009994 name: secondary chorionic villus namespace: uberon def: "A chorionic villus that is has a core of loose connective tissue, which in humans grows into the primary villi about the third week of development." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] xref: ncithesaurus:Secondary_Chorionic_Villus is_a: UBERON:0007106 ! chorionic villus [Term] id: UBERON:0009995 name: tertiary chorionic villus namespace: uberon def: "Tertiary chorionic villi contain embryonic blood vessels that develop from mesenchymal cells in the loose connective tissue core. These blood vessels connect up with vessels that develop in the chorion and connecting stalk and begin to circulate embryonic blood about the third week of development in humans." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] xref: ncithesaurus:Tertiary_Chorionic_Villus is_a: UBERON:0007106 ! chorionic villus [Term] id: UBERON:0010002 name: pulmonary neuroendocrine body namespace: uberon def: "corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors." [MP:0010921] synonym: "NEB" EXACT [NEW_MP:0010921] synonym: "pulmonary neuroepithelial body" EXACT [NEW_MP:0010921] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000115 ! lung epithelium [Term] id: UBERON:0010005 name: placental labyrinth villi namespace: uberon def: "the vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation" [MP:0011522] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003946 ! placenta labyrinth [Term] id: UBERON:0010006 name: placenta intervillous maternal lacunae namespace: uberon def: "the spaces of the placenta occupied by maternal blood, into which the fetal labyrinth villi project" [MP:0011525] is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0003946 ! placenta labyrinth [Term] id: UBERON:0010007 name: placenta fetal blood space namespace: uberon def: "the spaces of the placenta occupied by fetal blood, primarily within the fetal labyrinth villi" [MP:0011526] is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0003946 ! placenta labyrinth [Term] id: UBERON:0010008 name: mammalian cotyledon namespace: uberon def: "Round structure consisting of chorionic villi[PMID]. A separations of the decidua basalis of the placenta, separated by placental septa. Each cotyledon consists of a main stem of a chorionic villus as well as its branches and subbranches. The cotyledons receive fetal blood from chorionic vessels, which branch off cotyledon vessels into the cotyledons, which, in turn, branch into capillaries. The cotyledons are surrounded by maternal blood, which can exchange oxygen and nutrients with the fetal blood in the capillaries[WP]." [PMID:19829370, Wikipedia:Cotyledon_%28mammal%29] comment: Rodents have a single cotyledon (called a discoid placenta), whereas humans have multiple cotyledons, although they are consolidated into a cluster that resembles a single disc[PMID:19829370] synonym: "cotyledon" BROAD [] xref: ncithesaurus:Cotyledon is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0002450 ! decidua [Term] id: UBERON:0010009 name: aggregate regional part of brain namespace: uberon def: "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NIF_GrossAnatomy:nlx_anat_20090509] synonym: "set of nuclei of neuraxis" EXACT [FMA:256381] xref: FMA:256381 xref: NIF_GrossAnatomy:nlx_anat_20090509 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0010010 name: basal nucleus of telencephalon namespace: uberon def: "Subdivision of telencephalon which is actually several islands of neurons lying within the substantia innominata, located ventral to the basal ganglia and anterior to the hypothalamus." [FMA:61887, Wikipedia:Nucleus_basalis_of_Meynert] comment: AO notes: MA has basal nucleus as synonym for BG. Function notes: rich in acetylcholine and choline acetyltransferase[WP]. Location notes: The NBM is inferior to the globus pallidus and within an area known as the substantia innominata synonym: "Meynert's nucleus" EXACT [FMA:61887] synonym: "basal magnocellular nucleus (substantia innominata)" EXACT [FMA:61887] synonym: "basal nuclei of Meynert" EXACT [FMA:61887] synonym: "basal nucleus" EXACT [NIF_GrossAnatomy:birnlex_1107] synonym: "basal nucleus of Meynert" EXACT [FMA:61887] synonym: "basal substance of telencephalon" EXACT [FMA:61887] synonym: "ganglion of Meynert" EXACT [FMA:61887] synonym: "nucleus basalis" EXACT [NIF_GrossAnatomy:birnlex_1107] synonym: "nucleus basalis of Meynert" EXACT [NIF_GrossAnatomy:birnlex_1107] synonym: "substantia basalis telencephali" EXACT [FMA:TA] xref: FMA:61887 xref: NIF_GrossAnatomy:birnlex_1107 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0003017 ! substantia innominata [Term] id: UBERON:0010011 name: collection of basal ganglia namespace: uberon comment: Editor note: it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done. synonym: "basal ganglia" EXACT [FMA:84013] synonym: "basal ganglia set" EXACT [FMA:84013] synonym: "set of basal ganglia" EXACT [FMA:84013] xref: BM:Tel-BG xref: FMA:84013 xref: GAID:617 xref: MA:0000184 xref: MESH:A.08.186.211.730.885.105 xref: NIF_GrossAnatomy:birnlex_826 xref: ncithesaurus:Basal_Ganglia is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0010009 ! aggregate regional part of brain relationship: part_of UBERON:0000454 ! cerebral subcortex relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0010012 name: upper beak namespace: uberon synonym: "maxillary beak" RELATED [] synonym: "upper mandible" RELATED SENSU [] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0010013 name: lower beak namespace: uberon synonym: "lower mandible" RELATED SENSU [] synonym: "mandibular beak" RELATED [] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0010014 name: epigonal organ namespace: uberon def: "An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system" [http://www.fishbase.org/glossary/Glossary.php?q=epigonal+organ] synonym: "subgonal organ" EXACT [] is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005057 ! immune organ relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0010015 name: ventral patch of Leydig's organ namespace: uberon is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000040 ! Leydig's organ [Term] id: UBERON:0010016 name: spiral valve of intestine namespace: uberon is_a: UBERON:0003978 ! valve is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002108 ! small intestine disjoint_from: UBERON:0010017 ! spiral valve of cystic duct disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus [Term] id: UBERON:0010017 name: spiral valve of cystic duct namespace: uberon def: "a series of crescentic folds of mucous membrane somewhat spirally arranged on the interior of the gallbladder and continuing into the cystic duct" [Wikipedia:Spiral_valves_of_Heister, http://dictionary.reference.com/browse/spiral+valve] synonym: "Heister's valve" EXACT [FMA:15855] synonym: "plica spiralis" EXACT [FMA:TA] synonym: "plica spiralis (ductus cysticus)" EXACT [FMA:15855] synonym: "spiral fold of cystic duct" EXACT [FMA:15855] synonym: "valve of Heister " EXACT [] xref: FMA:15855 xref: SCTID:270125000 is_a: UBERON:0003978 ! valve disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus [Term] id: UBERON:0010018 name: spiral valve of conus arteriosus namespace: uberon def: "The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs)." [http://people.eku.edu/ritchisong/342notes9.html] comment: Taxon notes: many dipnoans and amphibians. Evolution notes: The spiral valve is considered to have evolved from the right member of the four embryonic endocardial ridges (Goodrich, 1930 - via Morris 1974) xref: AAO:0010251 xref: http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter21/medialib/Kardong_fig_12_29.html is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003983 ! conus arteriosus [Term] id: UBERON:0010019 name: spiracle namespace: uberon def: "a small hole behind each eye that opens to the mouth in some fish. In the primitive jawless fish the first gill opening immediately behind the mouth is essentially similar to the other gill openings." [ISBN10:0073040584, Wikipedia:Spiracle#Vertebrates] comment: Taxon notes: The spiracle is still found in all cartilaginous fish except chimaeras, and in bony fishes in the coelacanth, sturgeon, paddlefish and bichirs. It is also seen as an otic notch in the skull of the extinct labyrinthodonts, and is thought to be associated with the ear opening in amniotes and frogs[WP]. In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups. TODO - check GO:0035277-spiracle morphogenesis, open tracheal system - taxon constraint in GO synonym: "vertebrate spiracle" EXACT [] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0010020 name: tubotympanic recess epithelium namespace: uberon def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [http://www.biology-online.org/dictionary/Tubotympanic_recess] xref: EHDAA2:0004115 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0010021 name: dorsal part of pharyngeal pouch 1 namespace: uberon comment: Development notes: in humans, dorsal diverticulum deepens as the tubotympanic recess to form the auditory tube[ISBN10:1607950324] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 [Term] id: UBERON:0010022 name: ventral part of pharyngeal pouch 1 namespace: uberon comment: Development notes: in humans, the ventral portion of pouches 1 and 2 are obliterated by the developing tongue[ISBN10:1607950324] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 [Term] id: UBERON:0010023 name: dorsal part of pharyngeal pouch 2 namespace: uberon comment: Development notes: in humans, persists as the tonsillar fossa - the endodermal lining covers the mesodermal lymphatic tissue to form the palatine tonsil[ISBN10:1607950324] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 [Term] id: UBERON:0010024 name: ventral part of pharyngeal pouch 2 namespace: uberon comment: Development notes: in humans, the ventral portion of pouches 1 and 2 are obliterated by the developing tongue[ISBN10:1607950324] is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 [Term] id: UBERON:0010025 name: dorsal part of pharyngeal pouch 3 namespace: uberon synonym: "dorsal 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0000409] xref: EHDAA2:0000409 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007124 ! pharyngeal pouch 3 [Term] id: UBERON:0010026 name: ventral part of pharyngeal pouch 3 namespace: uberon synonym: "ventral 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0002173] xref: EHDAA2:0002173 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007124 ! pharyngeal pouch 3 [Term] id: UBERON:0010027 name: dorsal part of pharyngeal pouch 4 namespace: uberon is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] id: UBERON:0010028 name: ventral part of pharyngeal pouch 4 namespace: uberon is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] id: UBERON:0010029 name: dorsal part of pharyngeal pouch 5 namespace: uberon is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] id: UBERON:0010030 name: ventral part of pharyngeal pouch 5 namespace: uberon is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] id: UBERON:0010031 name: 6th arch mesenchyme namespace: uberon xref: EHDAA2:0004076 is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region [Term] id: UBERON:0010032 name: anterior part of tongue namespace: uberon def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [Wikipedia:Anterior_tongue] comment: AO notes: check NCIT. Development notes: The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue synonym: "anterior 2/3 of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "anterior 2/3 of tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "anterior two thirds of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "apex linguae" RELATED [Wikipedia:Anterior_tongue] synonym: "apex of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "buccal part of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "front of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "oral part of the tongue" RELATED [Wikipedia:Anterior_tongue] xref: FMA:229084 xref: ncithesaurus:Apex_of_the_Tongue is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure [Term] id: UBERON:0010033 name: posterior part of tongue namespace: uberon def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)" [Wikipedia:Posterior_tongue] synonym: "base of the tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645] synonym: "pars posterior linguae" EXACT [FMA:TA] synonym: "pars postsulcalis (dorsum linguae)" EXACT [FMA:54645] synonym: "pharyngeal part of the tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "pharyngeal part of tongue" EXACT [FMA:54645] synonym: "pharyngeal portion of dorsum of tongue" EXACT [FMA:54645] synonym: "posterior 1/3 of the tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "posterior part of dorsum of tongue" EXACT [FMA:54645] synonym: "posterior third of tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "postsulcal part of dorsum of tongue" EXACT [FMA:54645] synonym: "radix linguae" RELATED [Wikipedia:Posterior_tongue] xref: FMA:54645 xref: ncithesaurus:Base_of_the_Tongue is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0009471 ! dorsum of tongue [Term] id: UBERON:0010034 name: copula linguae namespace: uberon def: "A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]." [Wikipedia:Copula_linguae] comment: add new term for Hypobranchial_eminence? synonym: "copula" EXACT [EHDAA2:0004611] xref: EHDAA2:0004611 xref: SCTID:361424000 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0010056 ! future tongue [Term] id: UBERON:0010036 name: anterior tegmental nucleus namespace: uberon def: "a group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 )" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1115] xref: ABA:AT xref: MA:0001055 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0010038 name: fundic gastric gland namespace: uberon def: "The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct." [Wikipedia:Fundic_glands] comment: Editor notes: Consider FMA:14923 synonym: "fundal gland" EXACT [] synonym: "fundus gland" EXACT [] synonym: "gastric fundal gland" EXACT [] synonym: "gastric fundus gland" EXACT [] synonym: "gastric gland of fundus of stomach" EXACT [] xref: SCTID:268338004 xref: ncithesaurus:Fundic_Gland is_a: UBERON:0000325 ! gastric gland relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach [Term] id: UBERON:0010039 name: food storage organ namespace: uberon def: "An organ of the digestive tract that is capable of retaining and storing food" [UBERON:cjm] comment: This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates subset: functional_classification ! functional_classification subset: grouping_class ! Subset consisting of classes creating for grouping purposes xref: TADS:0000172 xref: TGMA:0001041 is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0010040 name: stomach non-glandular epithelium namespace: uberon def: "Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands." [ISBN10:0073040584] comment: Editor notes: OWL definition to be added later. Taxon notes: this region may develop from the base of the esophagus (some herbivores) - in rodents, loss of the gastric glands in the mucosa leavea a nonglandular epithelial stomach in which smooth muscle contractions knead and mix digesta. This can be keratinized. synonym: "stomach aglandular epithelium" EXACT [] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Mammalian_Stomachs_remake.png/650px-Mammalian_Stomachs_remake.png is_a: UBERON:0001276 ! epithelium of stomach [Term] id: UBERON:0010041 name: median ovary namespace: uberon comment: Taxon notes: In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[Wikipedia:Ovary#In_other_animals] is_a: UBERON:0000992 ! female gonad [Term] id: UBERON:0010042 name: 1st arch mesenchyme namespace: uberon synonym: "mesenchyme of 1st arch" EXACT [EMAPA:16128] xref: EMAPA:16128 is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region [Term] id: UBERON:0010045 name: 1st arch maxillary mesenchyme namespace: uberon xref: EHDAA2:0000041 is_a: UBERON:0010042 ! 1st arch mesenchyme [Term] id: UBERON:0010046 name: entire pharyngeal arch associated mesenchyme namespace: uberon def: "The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm] synonym: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550] synonym: "entire branchial arch associated mesenchyme" EXACT [UBERON:cjm] synonym: "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459] xref: EHDAA2:0001459 xref: EMAPA:16550 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0010047 name: oral gland namespace: uberon def: "Gland of the epithelium lining the oral cavity. The most common are the salivary glands." [ISBN10:0073040584] comment: Note that Kardong classifies lacrimal glands here is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0003408 ! gland of gut is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0010048 name: Duvernoy's gland namespace: uberon def: "A gland situated on the upper lip found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland] is_a: UBERON:0010047 ! oral gland property_value: "homologous_to" UBERON:0008976 [Term] id: UBERON:0010049 name: supralabial gland namespace: uberon def: "Glandular tissue present in lips of reptiles." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland] is_a: UBERON:0010047 ! oral gland [Term] id: UBERON:0010050 name: infralabial gland namespace: uberon def: "Glandular tissue present in lips of reptiles." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland] is_a: UBERON:0010047 ! oral gland [Term] id: UBERON:0010051 name: dorsal patch of Leydig's organ namespace: uberon is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000040 ! Leydig's organ [Term] id: UBERON:0010052 name: mucosa of dorsum of tongue namespace: uberon comment: Editor notes: check surface terms. Development notes: develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN10:1607950324 synonym: "mucosa of dorsal surface of tongue" EXACT [] xref: FMA:74871 xref: SCTID:245835003 is_a: UBERON:0005020 ! mucosa of tongue [Term] id: UBERON:0010053 name: echolocation organ namespace: uberon is_a: UBERON:0000062 ! organ [Term] id: UBERON:0010054 name: malleus cartilage condensation namespace: uberon xref: EMAPA:18229 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation [Term] id: UBERON:0010055 name: stapes cartilage condensation namespace: uberon xref: EMAPA:18230 is_a: UBERON:0005863 ! cartilaginous condensation [Term] id: UBERON:0010056 name: future tongue namespace: uberon xref: EHDAA2:0000696 xref: EHDAA:2951 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003103 ! compound organ is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0010057 name: hypopharyngeal eminence namespace: uberon synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic] xref: EHDAA2:0000799 xref: EMAPA:17352 xref: SCTID:361420009 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0010056 ! future tongue [Term] id: UBERON:0010059 name: hypoglossal cord namespace: uberon xref: EHDAA2:0004610 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002036 ! striated muscle tissue relationship: part_of UBERON:0010056 ! future tongue [Term] id: UBERON:0010060 name: pharyngeal opening of pharyngotympanic tube namespace: uberon def: "On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "ostium pharyngeum tubae auditivae" EXACT [FMA:TA] synonym: "ostium pharyngeum tubae auditoriae" EXACT [FMA:TA] synonym: "pharyngeal opening of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal opening of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of pharyngotympanic tube" EXACT [FMA:54979] synonym: "pharyngeal ostium" RELATED [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "pharyngeal ostium of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal ostium of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal ostium of pharyngotympanic tube" EXACT [FMA:54979] synonym: "pharyngeal tubal ostium" EXACT [FMA:54979] xref: FMA:54979 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0010061 name: lumen of nasopharynx namespace: uberon synonym: "nasopharynx lumen" EXACT [FMA:55094] xref: FMA:55094 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0010062 name: pharyngotympanic tube epithelium namespace: uberon synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117] synonym: "eustachian tube epithelium" EXACT [UBERON:cjm] xref: EHDAA2:0004117 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0002393 ! pharyngotympanic tube [Term] id: UBERON:0010063 name: tympanic cavity epithelium namespace: uberon xref: EHDAA2:0004116 is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0010064 name: open anatomical space namespace: uberon def: "An anatomical space with at least one opening to another space or the exterior." [AEO:0000221] xref: EHDAA2:0004616 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0010065 name: auditory meatus epithelium namespace: uberon xref: EHDAA2:0004114 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0010066 name: tympanic plate namespace: uberon synonym: "pars tympanica (os temporale)" EXACT [FMA:52880] synonym: "tympanic part of temporal bone" EXACT [FMA:52880] xref: FMA:52880 is_a: UBERON:0000032 ! cranial structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0010069 name: outer epithelial layer of tympanic membrane namespace: uberon def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [PMID:11237469, UBERON:cjm] synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819] synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819] synonym: "outer layer of tympanic membrane" EXACT [] synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [UBERON:cjm] xref: FMA:56819 xref: SCTID:39725007 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009647 ! tympanic membrane epithelium [Term] id: UBERON:0010070 name: intermediate layer of tympanic membrane namespace: uberon def: "The intermediate fibrous layer of the tympanic membrane." [PMID:11237469, https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376] comment: AO notes: check MA synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830] synonym: "intermediate fibrous layer of tympanic membrane" EXACT [FMA:56830] xref: FMA:56830 xref: MA:0001223 xref: SCTID:44692008 is_a: UBERON:0010071 ! layer of tympanic membrane [Term] id: UBERON:0010071 name: layer of tympanic membrane namespace: uberon comment: In mammals, this class groups together the two epithelial layers plus the intermediate fibrous layer subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "tympanic membrane layer" EXACT [FMA:56732] xref: FMA:56732 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002364 ! tympanic membrane [Term] id: UBERON:0010074 name: chromaffin system namespace: uberon def: "The cells of the body which stain with chromium salts. They occur along the sympathetic nerves, in the adrenal gland, and in various other organs." [MESH:A.06.224] comment: Taxon notes: in adult cylostomes and teleosts, the interrenal bodies are separate from chromaffin bodies synonym: "argentaffin system" RELATED [MESH:A.06.224] synonym: "chromaffin tissue" RELATED [] xref: FMA:79645 xref: MESH:A.06.224 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000949 ! endocrine system property_value: "homologous_to" UBERON:0001236 [Term] id: UBERON:0010075 name: sacral neural crest namespace: uberon def: "One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia." [XB:curator, http://www.ncbi.nlm.nih.gov/books/NBK10065/] xref: XAO:0004192 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0010076 name: network of trabecular spaces in bone tissue namespace: uberon def: "Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone." [FMA:259332] synonym: "trabecular network of bone tissue" EXACT [FMA:259332] xref: FMA:259332 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0010077 name: cuboidal epithelium namespace: uberon comment: AO notes: in NCIT this is glandular xref: ncithesaurus:Cuboidal_Epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0010078 name: optic choroid vascular plexus namespace: uberon alt_id: ZFA:0005228 comment: Editor notes: to be verified synonym: "CVP" EXACT [ZFA:0005094] synonym: "capillary lamina of choroid or choriocapillaris" EXACT [XAO:0004176] synonym: "choroid vasculature" RELATED [ZFA:0005094] synonym: "optic choroid vascular plexus" RELATED [XAO:0004176] xref: TAO:0005094 xref: XAO:0004176 xref: ZFA:0005094 is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0001776 ! choroid relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: UBERON:0010081 name: future common hepatic duct namespace: uberon xref: EHDAA2:0000595 is_a: UBERON:0003703 ! extrahepatic bile duct is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007497 ! developing epithelial placode [Term] id: UBERON:0010082 name: future corpus striatum namespace: uberon xref: EHDAA2:0000596 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0010083 name: future dermis namespace: uberon xref: EHDAA2:0000598 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0010084 name: future diaphragm namespace: uberon xref: EHDAA2:0000599 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0001134 ! skeletal muscle tissue relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0010090 name: future falx cerebri namespace: uberon xref: EHDAA2:0000608 is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007524 ! dense mesenchyme tissue [Term] id: UBERON:0010091 name: future hindbrain meninges namespace: uberon xref: EHDAA2:0000610 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010092 name: future metencephalon namespace: uberon xref: EHDAA2:0000623 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010096 name: future myelencephalon namespace: uberon xref: EHDAA2:0000640 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0010113 name: future membranous labyrinth namespace: uberon xref: EHDAA2:0000899 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0004637 ! otic capsule [Term] id: UBERON:0010115 name: future dura mater namespace: uberon xref: EHDAA2:0004317 is_a: UBERON:0002360 ! meninx [Term] id: UBERON:0010122 name: future caudate nucleus namespace: uberon comment: TODO: dev from future corpus striatum xref: EHDAA2:0004461 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! brain grey matter [Term] id: UBERON:0010123 name: future facial nucleus namespace: uberon xref: EHDAA2:0004639 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0010124 name: future inferior salivatory nucleus namespace: uberon comment: TODO - devfrom xref: EHDAA2:0004643 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0010125 name: future superior salivatory nucleus namespace: uberon xref: EHDAA2:0004644 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0010126 name: future nucleus ambiguus namespace: uberon xref: EHDAA2:0004647 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0010127 name: future dorsal motor nucleus of vagus namespace: uberon xref: EHDAA2:0004650 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0010128 name: future pterygopalatine ganglion namespace: uberon synonym: "future Meckel ganglion" EXACT [MP:0008314, Obol:automatic] synonym: "future Meckel's ganglion" EXACT [FMA:6965, Obol:automatic] synonym: "future nasal ganglion" EXACT [MP:0008314, Obol:automatic] synonym: "future palatine ganglion" EXACT [MP:0008314, Obol:automatic] synonym: "future pterygopalatine ganglia" EXACT [MP:0008314, Obol:automatic] synonym: "future sphenopalatine ganglion" EXACT [MP:0008314, Obol:automatic] synonym: "future sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0000673, EHDAA2:0001889, Obol:automatic] xref: EHDAA2:0000673 is_a: UBERON:0003338 ! ganglion of peripheral nervous system relationship: part_of UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0010129 name: femur cartilage condensation namespace: uberon synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0005254 ! upper leg mesenchyme [Term] id: UBERON:0010130 name: autopod plate namespace: uberon def: "the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [MP:0004576] is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0010131 name: conducting tissue of heart namespace: uberon synonym: "specialized conducting tissue of heart" EXACT [FMA:83378] synonym: "specialized muscle tissue of heart" EXACT [FMA:83378] xref: EHDAA2:0004528 xref: FMA:83378 is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0010132 name: gastroduodenal artery namespace: uberon def: "a small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries)." [Wikipedia:Gastroduodenal_artery] xref: EHDAA2:0000310 xref: EHDAA:8574 xref: FMA:14775 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0010133 name: neuroendocrine gland namespace: uberon xref: MA:0000720 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0002368 ! endocrine gland [Term] id: UBERON:0010134 name: secretory circumventricular organ namespace: uberon xref: MA:0002943 is_a: UBERON:0005408 ! circumventricular organ is_a: UBERON:0010133 ! neuroendocrine gland [Term] id: UBERON:0010135 name: sensory circumventricular organ namespace: uberon xref: MA:0002944 is_a: UBERON:0005408 ! circumventricular organ relationship: part_of UBERON:0001032 ! sensory system [Term] id: UBERON:0010136 name: epithelial sheet namespace: uberon def: "An epithelial sheet is a flat surface consisting of closely packed epithelial cells." [GO:0002011] is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0010137 name: polarized epithelium namespace: uberon def: "A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis." [GO:0001738] is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0010141 name: primitive sex cord of indifferent gonad namespace: uberon comment: Usage notes: note that this represents the indifferent structure. synonym: "indifferent sex cord" EXACT [] synonym: "primitive sex cords" EXACT [EHDAA2:0004051] xref: EHDAA2:0004051 is_a: UBERON:0004909 ! epithelium of gonad is_a: UBERON:0005295 ! sex cord [Term] id: UBERON:0010143 name: seminal vesicle fluid namespace: uberon comment: AO notes: in ncit, seminal fluid is a subtype of seminal vesicle secretion synonym: "secretion of seminal vesicle" EXACT [FMA:62969] synonym: "seminal fluid" RELATED INCONSISTENT [] synonym: "seminal vesicle secretion" EXACT [FMA:62969] synonym: "vesicular fluid" BROAD [] xref: FMA:62969 xref: MA:0002526 xref: ncithesaurus:Seminal_Fluid xref: ncithesaurus:Seminal_Vesicle_Secretion is_a: UBERON:0006530 ! seminal fluid [Term] id: UBERON:0010145 name: paraurethral gland namespace: uberon def: "In human anatomy (female), the Skene's glands (also known as the lesser vestibular glands, periurethral glands, skene glands, paraurethral glands, U-spot, or female prostate) are glands located on the anterior wall of the vagina, around the lower end of the urethra. They drain into the urethra and near the urethral opening. These glands are surrounded with tissue, which includes the part of the clitoris that reaches up inside the vagina and swells with blood during sexual arousal." [Wikipedia:Skene%27s_gland] synonym: "Skene gland" EXACT [] synonym: "Skene's gland" EXACT [FMA:20083] synonym: "U-spot" RELATED [Wikipedia:Skene%27s_gland] synonym: "female prostate" EXACT [PMID:10668204, Wikipedia:Skene%27s_gland] synonym: "para-urethral gland" EXACT [FMA:20083] synonym: "periurethral gland" EXACT [Wikipedia:Skene%27s_gland] xref: FMA:20083 xref: SCTID:264125007 xref: ncithesaurus:Paraurethral_Gland is_a: UBERON:0002530 ! gland is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0000474 ! female reproductive system property_value: "homologous_to" UBERON:0002367 [Term] id: UBERON:0010146 name: paraurethral duct namespace: uberon def: "The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening. Like the Skene's glands, they are named after Alexander Skene." [Wikipedia:Skene%27s_ducts] synonym: "Skene's duct" EXACT [FMA:21445] synonym: "female prostate duct" EXACT [PMID:10668204] synonym: "periurethral duct" EXACT [] xref: FMA:21445 is_a: UBERON:0000058 ! duct is_a: UBERON:0005156 ! reproductive structure property_value: "homologous_to" UBERON:0002485 [Term] id: UBERON:0010147 name: male accessory sex gland namespace: uberon def: "Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male." [BTO:0004798] xref: BTO:0004798 is_a: UBERON:0005399 ! male reproductive gland relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0010148 name: mating plug namespace: uberon def: "A gelatinous secretion used in the mating of some species. It is deposited by a male into a female genital tract and later hardens into a plug or glues the tract together." [Wikipedia:Mating_plug] synonym: "copulatory plug" EXACT [SPD:0000547] xref: SPD:0000547 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0010150 name: duct of major vestibular gland namespace: uberon def: "One of a pair of ducts leading from the Bartholin's glands to the surface of the vulva" [Wikipedia:Bartholin's_duct] synonym: "Bartholin's duct" RELATED INCONSISTENT [Wikipedia:Bartholin's_duct] synonym: "duct of greater vestibular gland" EXACT [FMA:20088] synonym: "greater vestibular gland duct" EXACT [FMA:20088] xref: FMA:20088 is_a: UBERON:0000058 ! duct property_value: "homologous_to" UBERON:0010151 [Term] id: UBERON:0010151 name: duct of bulbourethral gland namespace: uberon synonym: "bulbourethral gland duct" EXACT [FMA:20091] synonym: "duct of bulbo-urethral gland" EXACT [FMA:20091] synonym: "ductus glandulae bulbourethralis" EXACT [FMA:TA] xref: FMA:20091 xref: SCTID:279709005 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system is_a: UBERON:0006554 ! urinary system structure [Term] id: UBERON:0010152 name: skin mucus namespace: uberon comment: Editor notes: Consider making a specific class e.g. mucus coating to represent the entire coating rather than an portion of secretion of a mucus gland in the skin. Candidate definition - \"The epidermal mucus of fish regulates swimming speed by controlling the hydrodynamic resistance of the skin surface. The mucus is also presumed to serve as a defence against pathogenic organisms and is intimately associated with osmoregulation.\" [BTO:0005082] synonym: "epidermal mucus" RELATED [BTO:0005082] xref: BTO:0005082 is_a: UBERON:0000456 ! bodily secretion [Term] id: UBERON:0010153 name: rumen papilla namespace: uberon synonym: "rumen papillae" EXACT PLURAL [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0008285 ! rumen epithelium [Term] id: UBERON:0010154 name: inner lining mucosa of the abomasum namespace: uberon def: "the inner mucosa of the fourth stomach chamber of a ruminant produces rennet." [Wikipedia:Rennet] synonym: "rennet" RELATED [BTO:0001168] xref: BTO:0001168 is_a: UBERON:0000344 ! mucosa is_a: UBERON:0001199 ! mucosa of stomach relationship: part_of UBERON:0007358 ! abomasum [Term] id: UBERON:0010155 name: parietomastoid suture namespace: uberon def: "the suture between the parietal and the temporal bones" [http://www.thefreedictionary.com/parietomastoid+suture] synonym: "parietomastoid suture of skull" EXACT [FMA:52947] xref: FMA:52947 xref: SCTID:136753005 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0010156 name: sphenofrontal suture namespace: uberon def: "The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone." [Wikipedia:Sphenofrontal_suture] synonym: "frontosphenoid suture" EXACT [FMA:52938] synonym: "sphenofrontal" RELATED [Wikipedia:Sphenofrontal_suture] synonym: "sphenofrontal suture of skull" EXACT [FMA:52938] synonym: "sutura sphenofrontalis" RELATED [Wikipedia:Sphenofrontal_suture] xref: FMA:52938 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0010157 name: sphenoparietal suture namespace: uberon def: "The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone." [Wikipedia:Sphenoparietal_suture] synonym: "sphenoparietal suture of skull" EXACT [FMA:52945] xref: FMA:52945 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0010158 name: sphenozygomatic suture namespace: uberon def: "The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone." [Wikipedia:Sphenozygomatic_suture] synonym: "sphenozygomatica suture of skull" EXACT [FMA:52956] xref: FMA:52956 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0010159 name: occipitomastoid suture namespace: uberon def: "The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture." [Wikipedia:Occipitomastoid_suture] synonym: "occipito-mastoid suture" RELATED [Wikipedia:Occipitomastoid_suture] synonym: "occipitomastoid suture of skull" EXACT [FMA:52934] synonym: "sutura occipitomastoidea" RELATED [Wikipedia:Occipitomastoid_suture] xref: FMA:52934 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0010160 name: lumen of lymphatic vessel namespace: uberon synonym: "lumen of lymphatic duct" EXACT [FMA:59681] synonym: "lymphatic vessel lumen" EXACT [FMA:59681] xref: FMA:59681 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0010161 name: lumen of blood vessel namespace: uberon synonym: "blood vessel lumen" EXACT [] xref: SCTID:91747007 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0005082 ! tube lumen [Term] id: UBERON:0010162 name: tail tip namespace: uberon synonym: "end of tail" RELATED [MA:0002848] xref: MA:0002848 xref: XAO:0004057 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0007812 ! post-anal tail relationship: part_of UBERON:0000924 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! ectoderm [Term] id: UBERON:0010163 name: eyebrow namespace: uberon def: "The eyebrow is an area of thick, delicate hairs above the eye that follows the shape of the lower margin of the brow ridges. Their main function is to protect the eye, but they are also important to human communication and facial expression. It is not uncommon for people to modify their eyebrows by means of hair addition or removal, make up, or piercings." [Wikipedia:Eyebrow] comment: AO notes: in ncit, this is an \"eye appendage\" subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA xref: FMA:54237 xref: MESH:A.01.456.505.420.338 xref: ncithesaurus:Eyebrow is_a: UBERON:0010165 ! collection of hair on face relationship: part_of UBERON:0004088 ! ocular region [Term] id: UBERON:0010164 name: collection of hairs namespace: uberon synonym: "hairs" EXACT [FMA:70752] synonym: "hairs set" EXACT [FMA:70752] synonym: "pili" EXACT [FMA:TA] synonym: "set of hairs" EXACT [FMA:70752] xref: FMA:70752 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0010165 name: collection of hair on face namespace: uberon subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "facial hair" RELATED [] synonym: "facial hairs set" EXACT [FMA:70741] synonym: "set of facial hairs" EXACT [FMA:70741] xref: FMA:70741 is_a: UBERON:0010164 ! collection of hairs [Term] id: UBERON:0010166 name: coat of hair namespace: uberon subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "fur coat" RELATED [] synonym: "hair coat" EXACT [] synonym: "set of coat hairs" EXACT [] is_a: UBERON:0010164 ! collection of hairs [Term] id: UBERON:0010167 name: beard namespace: uberon def: "the collection of hair that grows on the chin, cheeks and neck of human beings. Usually, only pubescent or adult males are able to grow beards. However, women with hirsutism may develop a beard. When differentiating between upper and lower facial hair, a beard specifically includes the moustache, which refers to hair above the upper lip and around it." [Wikipedia:Beard] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA xref: FMA:54240 is_a: UBERON:0010165 ! collection of hair on face [Term] id: UBERON:0010168 name: collection of eyelashes namespace: uberon synonym: "cilia" EXACT [FMA:TA] synonym: "eyelashes" EXACT [FMA:70742] synonym: "eyelashes set" EXACT [FMA:70742] synonym: "set of eyelashes" EXACT [FMA:70742] xref: FMA:70742 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010165 ! collection of hair on face [Term] id: UBERON:0010169 name: moustache namespace: uberon def: "facial hair grown on the outer surface of the upper lip. It may or may not be accompanied by a type of beard, a facial hair style grown and cropped to cover most of the lower half of the face." [Wikipedia:Moustache] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "mustache" EXACT [] xref: FMA:59652 is_a: UBERON:0010165 ! collection of hair on face relationship: part_of UBERON:0004089 ! midface [Term] id: UBERON:0010170 name: region of neural crest namespace: uberon xref: TAO:0000045 xref: ZFA:0000045 is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0010171 name: strand of hair of face namespace: uberon synonym: "face hair" EXACT [FMA:54360] synonym: "face hair strand" EXACT [] synonym: "facial hair" RELATED [FMA:54360] synonym: "hair of face" EXACT [FMA:54360] xref: FMA:54360 is_a: UBERON:0001037 ! strand of hair [Term] id: UBERON:0010172 name: bulb of aorta namespace: uberon def: "the portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles" [MP:0011572] synonym: "aortic bulb" EXACT [FMA:3740] synonym: "bulb of ascending aorta" EXACT [FMA:3740] synonym: "bulbus aortae" EXACT [FMA:TA] synonym: "root of aorta" EXACT [FMA:3740] synonym: "supraaortic valve area" EXACT [FMA:3740] xref: FMA:3740 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001496 ! ascending aorta [Term] id: UBERON:0010173 name: sinotubular junction namespace: uberon def: "the point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure" [MP:0011572] synonym: "sinotubular ridge" EXACT [MP:0011572] is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001496 ! ascending aorta [Term] id: UBERON:0010174 name: Schweigger-Seidel sheath namespace: uberon def: "a phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen" [PMC:PMC3204613, Wikipedia:Schweigger-Seidel_sheath] is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001980 ! arteriole relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0010175 name: nutrient vein namespace: uberon xref: FMA:50780 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0010176 name: nutrient artery namespace: uberon def: "The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals." [Wikipedia:Nutrient_artery] xref: FMA:50779 xref: SCTID:337318006 is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0010181 name: straight venules of kidney namespace: uberon def: "The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries." [Wikipedia:Straight_venules_of_kidney] synonym: "set of straight venules of kidney" EXACT [FMA:72007] synonym: "venae rectae" RELATED [Wikipedia:Straight_venules_of_kidney] synonym: "venulae rectae" RELATED [Wikipedia:Straight_venules_of_kidney] synonym: "venulae rectae of kidney" EXACT [FMA:72007] synonym: "venulae rectae renis" EXACT [FMA:TA] synonym: "venulae recti" RELATED [Wikipedia:Straight_venules_of_kidney] xref: FMA:72007 xref: Wikipedia:Straight_venules_of_kidney is_a: UBERON:0005629 ! vascular plexus is_a: UBERON:0006544 ! kidney vasculature relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0010182 name: vaginal part of cervix namespace: uberon def: "The vaginal portion of the cervix projects free into the anterior wall of the vagina between the anterior and posterior fornices vaginae" [Wikipedia:Vaginal_portion_of_cervix] synonym: "portio vaginalis" EXACT [] synonym: "portio vaginalis cervicis" EXACT [] xref: FMA:77056 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000002 ! uterine cervix [Term] id: UBERON:0010183 name: liver trabecula namespace: uberon def: "A trabecula that is part of a liver" [GO:0060344, Obol:automatic] synonym: "hepatic trabecula" RELATED [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000440 ! trabecula [Term] id: UBERON:0010185 name: rete ovarii namespace: uberon comment: Editor note: todo xref: EMAPA:17966 xref: SCTID:259261007 is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0010186 name: male urethral gland namespace: uberon def: "Any of the many glands that branch off the wall of the urethra of male mammals. The glands secrete mucus, which is incorporated into the semen, and are most numerous in the section of the urethra that runs through the penis. [WP,unvetted]." [Wikipedia:Urethral_gland] synonym: "Littre's gland" EXACT [FMA:21443] synonym: "gland of male urethra" EXACT [] synonym: "male urethra gland" EXACT [] xref: EMAPA:29645 xref: FMA:21443 xref: SCTID:303562001 is_a: UBERON:0001338 ! urethral gland [Term] id: UBERON:0010187 name: female urethral gland namespace: uberon synonym: "female urethra gland" EXACT [] synonym: "gland of female urethra" EXACT [] synonym: "urethral gland (female)" EXACT [FMA:21444] xref: EMAPA:29653 xref: FMA:21444 xref: SCTID:279476001 is_a: UBERON:0001338 ! urethral gland [Term] id: UBERON:0010188 name: protuberance namespace: uberon def: "A roughly circular bulge in a surface." [EHDAA2:0003250] xref: AEO:0000205 xref: EHDAA2:0003250 xref: FMA:82506 is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0010189 name: right atrium venous valve namespace: uberon comment: AO notes: part_of in EHDAA2. Only child in MA. synonym: "right venous valve" RELATED [EHDAA2:0001762] xref: EHDAA2:0001762 xref: EMAPA:17010 xref: EMAPA:17328 xref: MA:0001872 is_a: UBERON:0005208 ! right atrium valve [Term] id: UBERON:0010190 name: pair of dorsal aortae namespace: uberon synonym: "paired dorsal aortae" EXACT [EHDAA2:0000410] xref: EHDAA2:0000410 xref: MA:0000476 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0010191 ! aortic system relationship: part_of UBERON:0000947 {gci_relation="part_of",gci_filler="NCBITaxon:10088"} ! aorta [Term] id: UBERON:0010191 name: aortic system namespace: uberon xref: EHDAA2:0004512 is_a: UBERON:0000480 ! anatomical group [Term] id: UBERON:0010192 name: genital artery namespace: uberon is_a: UBERON:0001637 ! artery [Term] id: UBERON:0010193 name: renal portal vein namespace: uberon def: "A portal vein that empties into capillaries within the kidneys." [ISBN10:0073040584] comment: Function notes: function not well understood. [ISBN10:0073040584] synonym: "renal portal veins" EXACT PLURAL [ZFA:0000577] xref: TAO:0000577 xref: ZFA:0000577 is_a: UBERON:0001638 ! vein is_a: UBERON:0003513 ! trunk blood vessel relationship: part_of UBERON:0002201 ! vasculature of trunk [Term] id: UBERON:0010194 name: hepatic portal system namespace: uberon def: "A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver." [ISBN10:0073040584] synonym: "hepatic-portal system" EXACT [AAO:0010225] synonym: "portal system of liver" EXACT [] xref: AAO:0010225 is_a: UBERON:0005806 ! portal system [Term] id: UBERON:0010195 name: renal portal system namespace: uberon def: "A portal system that transports blood returning from capillary beds within tail or hindlimbs through paired renal portal veins that empty into capillaries within the kidneys." [ISBN10:0073040584] comment: Function notes: function not well understood. Taxon notes: present in all classes of vertebrates except mammals; the mammalian kidney has a low pressure vascular network that may be its counterpart [ISBN10:0073040584] synonym: "portal system of kidney" EXACT [] synonym: "renal-portal system" EXACT [AAO:0010518] xref: AAO:0010518 is_a: UBERON:0005806 ! portal system [Term] id: UBERON:0010197 name: trunk of common carotid artery namespace: uberon def: "The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery." [UBERON:cjm] synonym: "common carotid arterial trunk" EXACT [FMA:69323] synonym: "common carotid artery" RELATED INCONSISTENT [EHDAA2:0000306] xref: EHDAA2:0000306 xref: FMA:69323 is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005396 ! carotid artery segment is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0001530 ! common carotid artery plus branches [Term] id: UBERON:0010198 name: carotid duct namespace: uberon def: "a portion of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it disappears early in development." [http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus] comment: In amphibians, closes at metamorphosis[Kardong] synonym: "ductus caroticus" EXACT [EMAPA:17006] xref: EMAPA:17006 is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0005805 ! dorsal aorta [Term] id: UBERON:0010202 name: lateral line namespace: uberon def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [Wikipedia:Lateral_line, ZFA:0001469] synonym: "lateral lines" EXACT PLURAL [ZFA:0001469] xref: TAO:0001469 xref: XAO:0004002 xref: ZFA:0001469 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0010204 name: tail vasculature namespace: uberon comment: AO notes: isa blood vessel in XAO synonym: "post-vent vasculature" EXACT [ZFA:0005037] synonym: "tail vasculature" RELATED [ZFA:0005037] xref: XAO:0004151 xref: ZFA:0005037 xref: ZFIN:ZDB-ANAT-051116-21 is_a: UBERON:0002049 ! vasculature is_a: UBERON:0001981 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! blood vessel relationship: part_of UBERON:0006071 {gci_relation="part_of",gci_filler="NCBITaxon:8353"} ! caudal region [Term] id: UBERON:0010205 name: mesencephalic vein namespace: uberon def: "One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]." [XAO:0004174, http://www.medilexicon.com/medicaldictionary.php?t=97378] comment: Editor notes: review this term, check taxon scope; note FMA has specific subtypes synonym: "vena mesencephalica" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] synonym: "venae mesencephalicae" EXACT PLURAL [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] xref: XAO:0004174 xref: ZFA:0005092 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0010207 name: nictitating membrane namespace: uberon def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [MESH:A.13.660, Wikipedia:Nictitating_membrane] comment: Taxon notes: Some reptiles, birds, and sharks have full nictitating membranes; in many mammals, a small, vestigial portion of the membrane remains in the corner of the eye. Some mammals, such as camels, polar bears, seals, and aardvarks, have full nictitating membranes[WP]. Editor notes: We exclude the shark structure for this via a taxon constraint. synonym: "nictitans" EXACT [http://tolweb.org/Amniota] synonym: "third eyelid" EXACT [MESH:A.13.660] xref: MESH:A.13.660 xref: http://en.wikipedia.org/wiki/File:Chickenblinking.jpg is_a: UBERON:0001711 ! eyelid is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0010209 name: plica semilunaris of conjunctiva namespace: uberon def: "The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted. It is considered a vestigial organ." [Wikipedia:Plica_semilunaris_of_conjunctiva] synonym: "plica semilunaris (conjunctiva)" EXACT [FMA:59045] synonym: "plica semilunaris of the conjunctiva" RELATED [Wikipedia:Plica_semilunaris_of_conjunctiva] synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045] xref: FMA:59045 xref: SCTID:280686009 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Gray1205.png/250px-Gray1205.png is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005160 ! vestigial structure relationship: part_of UBERON:0001811 ! conjunctiva property_value: "homologous_to" UBERON:0010207 [Term] id: UBERON:0010210 name: blood clot namespace: uberon def: "A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network." [BTO:0000102, Wikipedia:Thrombus] synonym: "thrombus" RELATED [BTO:0000102] xref: BTO:0000102 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0010211 name: granulation tissue namespace: uberon def: "Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes." [BTO:0003257] xref: BTO:0003257 xref: MESH:A.10.165.450 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0010212 name: laryngeal apparatus namespace: uberon def: "Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring." [AAO:0000267] synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904] xref: AAO:0000267 xref: EHDAA2:0000904 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0010213 name: laryngeal pre-cartilage condensation namespace: uberon is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0010212 ! laryngeal apparatus [Term] id: UBERON:0010214 name: cricoid pre-cartilage condensation namespace: uberon xref: EHDAA2:0000327 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010215 name: arytenoid swellings namespace: uberon xref: EHDAA2:0000146 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005856 ! mesenchymal condensation relationship: part_of UBERON:0010212 ! laryngeal apparatus [Term] id: UBERON:0010219 name: thyroid pre-cartilage condensation namespace: uberon xref: EHDAA2:0004088 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010220 name: arytenoid pre-cartilage condensation namespace: uberon xref: EHDAA2:0000144 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010221 name: laryngeal associated mesenchyme namespace: uberon xref: EHDAA2:0004085 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0010222 name: anatomical line between pupils namespace: uberon synonym: "interpupillary line" EXACT [] is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0010223 name: left pupil namespace: uberon synonym: "pupil of left eye" EXACT [FMA:58254] xref: FMA:58254 xref: SCTID:368597006 is_a: UBERON:0001771 ! pupil [Term] id: UBERON:0010224 name: right pupil namespace: uberon synonym: "pupil of right eye" EXACT [FMA:58253] xref: FMA:58253 xref: SCTID:368575009 is_a: UBERON:0001771 ! pupil [Term] id: UBERON:0010225 name: thalamic complex namespace: uberon xref: EHDAA2:0004469 xref: FMA:258745 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0010226 name: primordial cardiac ventricle namespace: uberon comment: TODO - unify mammalian embryonic and synonym: "primordial ventricle" EXACT [FMA:71006] xref: FMA:71006 is_a: UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0010227 name: primordial cardiac atrium namespace: uberon synonym: "primordial atrium" EXACT [FMA:71005] xref: FMA:71005 is_a: UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0010228 name: ruminal fluid namespace: uberon xref: BTO:0004789 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0010229 name: ruminant esophageal groove namespace: uberon def: "A muscular structure at the lower end of the esophagus that, when closed, forms a tube allowing milk to go directly into the abomasum. (This prevents milk from being fermented or soured by the ruminal microorganisms)." [http://www.extension.org/pages/16468/esophageal-groove] comment: The formation of the esophageal groove is controlled by neural stimulation from suckling and milk proteins. This means milk, colostrum, and milk replacer bypass the rumen, while water enters it synonym: "esophageal groove" BROAD SENSU [] synonym: "reticular groove" BROAD SENSU [] synonym: "ruminant reticular groove" EXACT [] xref: BTO:0004789 is_a: UBERON:0006846 ! groove [Term] id: UBERON:0010230 name: eyeball of camera-type eye namespace: uberon comment: See notes for camera-type eye synonym: "eye" RELATED INCONSISTENT [] synonym: "eyeball" EXACT [FMA:12513] synonym: "globe" RELATED [HP:0100886, MIAA:0000283] xref: FMA:12513 xref: MIAA:0000283 xref: SCTID:244486005 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0010231 name: anatomical line between outer ears namespace: uberon synonym: "otic line" RELATED [] is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0010232 name: placodal ectoderm namespace: uberon is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0010233 name: stroma of thyroid gland namespace: uberon def: "the connective tissue that supports the lobules and follicles of the thyroid gland." [http://www.drugs.com/dict/stroma-of-thyroid-gland.html] synonym: "thyroid gland stroma" EXACT [FMA:86304] synonym: "thyroid stroma" EXACT [] xref: FMA:86304 is_a: UBERON:0003891 ! stroma is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure [Term] id: UBERON:0010234 name: palatopharyngeus namespace: uberon def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [Wikipedia:Palatopharyngeus_muscle] comment: Structure notes: It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae synonym: "pharyngopalatinus" RELATED [Wikipedia:Palatopharyngeus_muscle] synonym: "pharyngopalatinus muscle" EXACT [Wikipedia:Palatopharyngeus_muscle] xref: FMA:46666 xref: SCTID:244796000 is_a: UBERON:0000933 ! pharyngeal muscle is_a: UBERON:0003682 ! palatal muscle [Term] id: UBERON:0010235 name: musculus uvulae namespace: uberon def: "The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]." [Wikipedia:Musculus_uvulae] synonym: "azygos uvulae" RELATED [Wikipedia:Musculus_uvulae] synonym: "m. uvulae" RELATED [Wikipedia:Musculus_uvulae] synonym: "musculus uvulae muscle" RELATED [Wikipedia:Musculus_uvulae] synonym: "uvulae muscle" RELATED [Wikipedia:Musculus_uvulae] synonym: "uvular muscle" EXACT [FMA:46733] xref: FMA:46733 xref: SCTID:244797009 is_a: UBERON:0003682 ! palatal muscle [Term] id: UBERON:0010238 name: torus pylorus namespace: uberon def: "A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal" [http://medical-dictionary.thefreedictionary.com/torus+pyloricus] synonym: "torus pyloricus" EXACT [] is_a: UBERON:0009034 ! stomach region relationship: part_of UBERON:0001166 ! pylorus [Term] id: UBERON:0010239 name: spiral colon namespace: uberon def: "A variant of the ascending colon ruminants and pigs." [Wikipedia:Spiral_colon] synonym: "coiled colon" EXACT [] xref: ncithesaurus:Spiral_Colon is_a: UBERON:0000168 ! segment of colon property_value: "homologous_to" UBERON:0001156 [Term] id: UBERON:0010240 name: zygomatic gland namespace: uberon def: "a salivary gland best developed in carnivores; located above the zygomatic arch and below the eye. Enlargement or mucocele of the gland causes exophthalmos" [http://medical-dictionary.thefreedictionary.com/zygomatic+gland] synonym: "orbital gland" RELATED [] synonym: "superior buccal gland" RELATED [] synonym: "upper molar gland" RELATED [] xref: ncithesaurus:Zygomatic_Gland is_a: UBERON:0001044 ! salivary gland [Term] id: UBERON:0010241 name: molar gland namespace: uberon def: "A modified ventral buccal gland well developed in cats and between orbicularis oris muscle and mucuous membrane of lower lip." [http://medical-dictionary.thefreedictionary.com/zygomatic+gland] synonym: "orbital gland" RELATED [] synonym: "upper molar gland" RELATED [] xref: ncithesaurus:Zygomatic_Gland is_a: UBERON:0001044 ! salivary gland [Term] id: UBERON:0010242 name: anterior buccal gland namespace: uberon xref: MA:0002700 is_a: UBERON:0001830 ! minor salivary gland [Term] id: UBERON:0010243 name: merocrine gland namespace: uberon def: "One in which the secretory cells maintain their integrity throughout the secretory cycle." [BTO:0002324] xref: BTO:0002324 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0010244 name: choroid tapetum lucidum namespace: uberon def: "A tapetum lucidum that is part of the choroid" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification] synonym: "tapetum choroideae" EXACT [BTO:0001828] xref: BTO:0001828 xref: SCTID:3034006 is_a: UBERON:0004868 ! tapetum lucidum [Term] id: UBERON:0010245 name: retinal tapetum lucidum namespace: uberon def: "A tapetum lucidum that is part of the retina" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification] comment: Taxon notes: as seen in teleosts, crocodiles, marsupials and fruit bats[WP] is_a: UBERON:0004868 ! tapetum lucidum [Term] id: UBERON:0010246 name: choroidal guanine tapetum namespace: uberon def: "A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification] comment: Taxon notes: elasmobranchii (skates, rays, and sharks) and chimaeras[WP] is_a: UBERON:0010244 ! choroid tapetum lucidum [Term] id: UBERON:0010247 name: choroidal tapetum cellulosum namespace: uberon def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification] comment: Taxon notes: carnivores, rodents and cetacea[WP] is_a: UBERON:0010244 ! choroid tapetum lucidum [Term] id: UBERON:0010248 name: choroidal tapetum fibrosum namespace: uberon def: "A choroid tapetum lucidum that is an array of extracellular fibers." [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification] comment: Taxon notes: cows, sheep, goats and horses[WP] is_a: UBERON:0010244 ! choroid tapetum lucidum [Term] id: UBERON:0010249 name: posterior meningeal artery namespace: uberon def: "The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen." [Wikipedia:Posterior_meningeal_artery] synonym: "meningeal branches of the ascending pharyngeal artery" RELATED [Wikipedia:Posterior_meningeal_artery] synonym: "posterior meningeal arteries" RELATED PLURAL [Wikipedia:Posterior_meningeal_artery] synonym: "terminal branch of ascending pharyngeal artery" EXACT [FMA:49503] xref: FMA:49503 is_a: UBERON:0003474 ! meningeal artery [Term] id: UBERON:0010250 name: middle meningeal artery namespace: uberon def: "The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma." [Wikipedia:Middle_meningeal_artery] synonym: "arteria meningea media" RELATED [Wikipedia:Middle_meningeal_artery] xref: FMA:49711 xref: SCTID:278100005 is_a: UBERON:0003474 ! meningeal artery is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0010251 name: anterior meningeal artery namespace: uberon def: "a meningeal branch to the dura mater arising from the anterior ethmoidal artery." [Wikipedia:Anterior_ethmoidal_artery] comment: Editor notes: this needs checkin as part of a general revision of the blood vessels and their branches - unclear if the anterior meningeal artery should be treated separately from the anterior ethmoidal artery (ie as a branch) or the same thing synonym: "anterior ethmoid arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior ethmoid artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal branch of anterior ethmoidal artery" EXACT [FMA:49993] xref: FMA:49993 xref: SCTID:369327009 is_a: UBERON:0003474 ! meningeal artery [Term] id: UBERON:0010252 name: 1st arch mandibular mesenchyme from neural crest namespace: uberon xref: EHDAA2:0000037 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme relationship: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme relationship: part_of UBERON:0010258 ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010253 name: 1st arch maxillary mesenchyme from neural crest namespace: uberon xref: EHDAA2:0000044 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme relationship: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme relationship: part_of UBERON:0010258 ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010254 name: 2nd arch mesenchyme from neural crest namespace: uberon xref: EHDAA2:0000068 xref: EMAPA:16281 is_a: UBERON:0005689 ! 2nd arch mesenchyme is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0010258 ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010255 name: 3rd arch mesenchyme from neural crest namespace: uberon xref: EHDAA2:0000083 xref: EMAPA:16404 is_a: UBERON:0005690 ! 3rd arch mesenchyme is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0005690 ! 3rd arch mesenchyme relationship: part_of UBERON:0010258 ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010256 name: 4th arch mesenchyme from neural crest namespace: uberon xref: EHDAA2:0000098 xref: EMAPA:16772 is_a: UBERON:0005691 ! 4th arch mesenchyme is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007524 ! dense mesenchyme tissue relationship: part_of UBERON:0005691 ! 4th arch mesenchyme relationship: part_of UBERON:0010258 ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010257 name: 6th arch mesenchyme from neural crest namespace: uberon xref: EHDAA2:0004077 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0010031 ! 6th arch mesenchyme relationship: part_of UBERON:0010031 ! 6th arch mesenchyme relationship: part_of UBERON:0010258 ! mesenchyme from rhombencephalic neural crest [Term] id: UBERON:0010258 name: mesenchyme from rhombencephalic neural crest namespace: uberon xref: EHDAA2:0004423 is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: UBERON:0010259 name: 1st arch mesenchyme from neural crest namespace: uberon xref: EMAPA:16129 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010042 ! 1st arch mesenchyme relationship: part_of UBERON:0010042 ! 1st arch mesenchyme [Term] id: UBERON:0010260 name: umbilical blood vessel namespace: uberon synonym: "umbilical cord blood vessel" EXACT [] is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0010262 name: operculum of brain namespace: uberon def: "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery. Post-mortem, the parietal operculum of Albert Einstein's brain was found to be malformed." [Wikipedia:Operculum_%28brain%29] synonym: "operculum" BROAD [HP:0100954] is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0010263 name: embryoid body namespace: uberon def: "Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors." [BTO:0001718, Wikipedia:Embryoid_body] comment: Editor notes: considering obsoleting, as does not cover naturally occurring entity xref: BTO:0001718 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:1000000 name: chin ventral margin namespace: uberon def: "Subdivision of the head consisting of the area along the lower edge of the chin." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0008199 ! chin [Term] id: UBERON:1000001 name: collection of hairs on vertex namespace: uberon def: "A collection of hairs that grows on the vertex (top of head)." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "collection of hair on cranium" RELATED [] synonym: "cranial hair" RELATED [] is_a: UBERON:0010164 ! collection of hairs relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:1000002 name: cranial midline area namespace: uberon def: "The middle part of the head, located approximately equidistant from the left and the right sides of the head." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "cranial midline" RELATED [] is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:1000003 name: dewlap namespace: uberon def: "A longitudinal flap of skin that hangs beneath the lower jaw or neck." [Wikipedia:Dewlap] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0000014 ! zone of skin is_a: UBERON:1000021 ! skin of face relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:1000004 name: collection of hair on ear namespace: uberon def: "A collection of hairs that grows on the external ear." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "external ear hair" RELATED [] is_a: UBERON:0010164 ! collection of hairs [Term] id: UBERON:1000005 name: external ear margin namespace: uberon def: "Subdivision of the head consisting of the area along the edge of the external ear." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:1000006 name: collection of hair on forehead namespace: uberon def: "A collection of hairs that grows on the forehead." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0010165 ! collection of hair on face [Term] id: UBERON:1000007 name: forehead protuberance namespace: uberon def: "A bulge, knob, or swelling that protrudes from the forehead." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0008200 ! forehead [Term] id: UBERON:1000008 name: left part of face namespace: uberon def: "Subdivision of the head consisting of the left half of the face, vertically divided." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:1000009 name: midline crest namespace: uberon def: "A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:1000010 name: mole namespace: uberon def: "A benign tumor on the skin, usually with darker pigment." [Wikipedia:Melanocytic_nevus] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "melanocytic nevus" RELATED [] is_a: UBERON:0000479 ! tissue [Term] id: UBERON:1000011 name: labial commissure namespace: uberon def: "Anatomical structure consisting of either corner of the mouth." [Wikipedia:Labial_commissure_of_mouth] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "corner of mouth" RELATED [] is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:1000012 name: nose anterior margin namespace: uberon def: "Subdivision of the head consisting of the area along the front edge of the external nose." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:1000013 name: nose vertex namespace: uberon def: "The extreme point of curvature of the external nose." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:1000014 name: right part of face namespace: uberon def: "Subdivision of the head consisting of the right half of the face, vertically divided." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:1000015 name: skin of snout namespace: uberon def: "A zone of skin that is part of the snout." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:1000021 ! skin of face [Term] id: UBERON:1000016 name: tip of snout namespace: uberon def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the snout." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0006333 ! snout [Term] id: UBERON:1000017 name: tip of external ear namespace: uberon def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:1000018 name: cluster of hairs namespace: uberon def: "A small collection or tuft of hairs." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "tuft of hair" RELATED [] is_a: UBERON:0010164 ! collection of hairs [Term] id: UBERON:1000019 name: top of head namespace: uberon def: "The top of the head." [UBERON:EJS] comment: note in the FMA, vertex is a point and not a subdivision subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA xref: FMA:46484 is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:1000020 name: collection of hair on snout namespace: uberon def: "A collection of hairs that grows on the snout." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA is_a: UBERON:0010165 ! collection of hair on face relationship: part_of UBERON:0006333 ! snout [Term] id: UBERON:1000021 name: skin of face namespace: uberon def: "A zone of skin that is part of the face." [UBERON:EJS] subset: phenotype_rcn ! A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA synonym: "facial skin" RELATED [] is_a: UBERON:0001084 ! skin of head [Term] id: UBERON:1000022 name: Zymbal's gland namespace: uberon def: "A modified sebaceous glands that are located at the base of the external ear and secrete into the auditory canal" [http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html] comment: Structure notes: Zymbalbs glands are located beneath squamous epithelium at the anterior and posterior aspect of the ear canal, and as a single external gland that is located anterior and ventral to the base of the external ear canal. The bilateral Zymbalbs glands are adjacent to the auditory canal and are made up of several lobules of modified sebaceous glands - http://ratguide.com/health/neoplasia/zymbals_gland_tumor.php. Editor notes: modified sebacious gland or subtype? synonym: "Zymbal gland" RELATED [MA:0002900] synonym: "gland of Zymbal" RELATED [] xref: MA:0002900 xref: SCTID:105587007 xref: ncithesaurus:Zymbal_Gland is_a: UBERON:0001821 ! sebaceous gland [Term] id: UBERON:1000023 name: spleen pulp namespace: uberon synonym: "malpighian corpuscles" EXACT [FMA:15845] synonym: "pulp of spleen" EXACT [] synonym: "splenic pulp" EXACT [] xref: FMA:15845 xref: MA:0002487 xref: SCTID:13515001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:1000024 ! parenchyma of spleen [Term] id: UBERON:1000024 name: parenchyma of spleen namespace: uberon synonym: "splenic parenchyma" EXACT [FMA:16029] xref: FMA:16029 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! parenchyma [Term] id: XAO:0000003 name: outer fin (Xenopus) namespace: xenopus_anatomy xref: AAO:0010380 is_a: UBERON:0008897 ! fin [Term] id: XAO:0000004 name: inner fin (Xenopus) namespace: xenopus_anatomy xref: AAO:0010379 is_a: UBERON:0008897 ! fin [Term] id: XAO:0000026 name: branchial crest (Xenopus) namespace: xenopus_anatomy def: "The most posterior of the population of migratory cells of the cranial neural crest, forming the branchial arch 3 and 4." [XB:curator] is_a: UBERON:0003099 ! cranial neural crest [Term] id: XAO:0000032 name: stomodeal-hypophyseal primordium (Xenopus) namespace: xenopus_anatomy def: "An anterior thickening of the sensorial layer of ectoderm, just above the cement gland. The hypophyseal layer separates from the stomodeal layer at NF stage 29&30, and when contacted by a protrusion of the foregut, the stomdeal layer will rupture to form the mouth opening at NF stage 39-40." [XB:curator] is_a: UBERON:0001048 ! primordium relationship: develops_from XAO:0000320 ! sensorial layer (Xenopus) [Term] id: XAO:0000036 name: animal cap (Xenopus) namespace: xenopus_anatomy def: "Ectodermal roof of the blastocoel." [XB:curator] synonym: "animal ectoderm" RELATED [] xref: AAO:0010463 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: XAO:0000037 name: animal cap inner layer (Xenopus) namespace: xenopus_anatomy def: "Sensorial layer of blastocoel roof ectoderm." [XB:curator] xref: AAO:0010464 is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0000036 ! animal cap (Xenopus) [Term] id: XAO:0000038 name: animal cap outer layer (Xenopus) namespace: xenopus_anatomy def: "Superficial layer of blastocoel roof ectoderm." [XB:curator] xref: AAO:0010465 is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0000036 ! animal cap (Xenopus) [Term] id: XAO:0000039 name: anatomical site namespace: xenopus_anatomy is_obsolete: true consider: XAO:0003186 ! anatomical region [Term] id: XAO:0000043 name: neuroectoderm outer layer (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: XAO:0000044 name: neuroectoderm inner layer (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: XAO:0000047 name: notoplate (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003075 ! neural plate [Term] id: XAO:0000049 name: cement gland primordium (Xenopus) namespace: xenopus_anatomy def: "The thickening of the epithelial layer of the ectoderm, with corresponding dark pigmentation, on the anterior dorso-ventral surface of the embryo." [ISBN:0-07-017977-8] synonym: "adhesive organ primordium" EXACT [] synonym: "cement gland" BROAD [] synonym: "cement gland anlage" EXACT [] is_a: UBERON:0001048 ! primordium relationship: develops_from XAO:0000320 ! sensorial layer (Xenopus) relationship: develops_from XAO:1000023 ! NF stage 13 (Xenopus) [Term] id: XAO:0000059 name: pronephros namespace: xenopus_anatomy is_obsolete: true replaced_by: XAO:0002000 ! pronephric kidney [Term] id: XAO:0000061 name: pronephric capsule namespace: xenopus_anatomy is_obsolete: true consider: XAO:0000318 ! glomus [Term] id: XAO:0000069 name: ventral marginal zone (Xenopus) namespace: xenopus_anatomy synonym: "VMZ" EXACT [] xref: AAO:0010453 is_a: UBERON:0004879 ! marginal zone of embryo [Term] id: XAO:0000070 name: ventro-lateral marginal zone (Xenopus) namespace: xenopus_anatomy xref: AAO:0010454 is_a: UBERON:0004879 ! marginal zone of embryo [Term] id: XAO:0000071 name: dorso-lateral marginal zone (Xenopus) namespace: xenopus_anatomy xref: AAO:0010450 is_a: UBERON:0004879 ! marginal zone of embryo [Term] id: XAO:0000073 name: deep (mesenchymal) layer namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0000074 name: involuting marginal zone (Xenopus) namespace: xenopus_anatomy xref: AAO:0010451 is_a: UBERON:0004879 ! marginal zone of embryo [Term] id: XAO:0000075 name: involuting marginal zone mesenchymal layer (Xenopus) namespace: xenopus_anatomy synonym: "deep involuting marginal zone" RELATED [] is_a: XAO:0000074 ! involuting marginal zone (Xenopus) [Term] id: XAO:0000076 name: involuting marginal zone epithelial layer (Xenopus) namespace: xenopus_anatomy synonym: "superficial involuting marginal zone" RELATED [] is_a: XAO:0000074 ! involuting marginal zone (Xenopus) [Term] id: XAO:0000077 name: bottle cell (Xenopus) namespace: xenopus_anatomy def: "Cell type that is first to migrate inwards at the blastopore during gastrulation." [OMD:bottle+cell] is_a: CL:0000361 ! gastrula cell [Term] id: XAO:0000078 name: blastopore lip (Xenopus) namespace: xenopus_anatomy def: "The edge of the blastopore." [ISBN:0-387-53740-6] xref: AAO:0010455 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000100 ! blastopore [Term] id: XAO:0000082 name: circumblastoporal collar (Xenopus) namespace: xenopus_anatomy synonym: "circumblastoporal region" RELATED [] is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: XAO:0000083 name: involuted dorsal mesoderm (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0000082 ! circumblastoporal collar (Xenopus) [Term] id: XAO:0000084 name: involuted ventral mesoderm (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0000082 ! circumblastoporal collar (Xenopus) [Term] id: XAO:0000088 name: upper blastopore lip (Xenopus) namespace: xenopus_anatomy synonym: "dorsal blastopore lip" RELATED [] xref: AAO:0010457 is_a: UBERON:0002050 ! embryonic structure relationship: part_of XAO:0000078 ! blastopore lip (Xenopus) [Term] id: XAO:0000089 name: lower blastopore lip (Xenopus) namespace: xenopus_anatomy synonym: "ventral blastopore lip" RELATED [] xref: AAO:0010456 is_a: UBERON:0002050 ! embryonic structure relationship: part_of XAO:0000078 ! blastopore lip (Xenopus) [Term] id: XAO:0000091 name: head endoderm (Xenopus) namespace: xenopus_anatomy def: "The endoderm of the head." [XB:curator] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000925 ! endoderm [Term] id: XAO:0000093 name: archenteron floor (Xenopus) namespace: xenopus_anatomy def: "The layer of cells forming the ventral surface of the archenteron space of the embryo." [PMID:17540356] xref: AAO:0010431 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004735 ! archenteron [Term] id: XAO:0000094 name: archenteron roof (Xenopus) namespace: xenopus_anatomy def: "The layer of cells forming the dorsal surface of the archenteron space of the embryo." [PMID:17540356] synonym: "gastrocoel roof" EXACT [] xref: AAO:0010432 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004735 ! archenteron [Term] id: XAO:0000106 name: post-anal gut (Xenopus) namespace: xenopus_anatomy xref: AAO:0010437 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004735 ! archenteron [Term] id: XAO:0000109 name: posterior wall of neurenteric canal (Xenopus) namespace: xenopus_anatomy synonym: "posterior wall of NEC" EXACT [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002533 ! tail bud [Term] id: XAO:0000147 name: glomerus namespace: xenopus_anatomy is_obsolete: true comment: Made obolete - PV, perhaps a typo. [Term] id: XAO:0000149 name: renal proximal convoluted tubule namespace: xenopus_anatomy is_obsolete: true consider: XAO:0000331 ! mesonephric early proximal tubule (Xenopus) [Term] id: XAO:0000150 name: loop of Henle namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0000152 name: renal distal convoluted tubule namespace: xenopus_anatomy is_obsolete: true consider: XAO:0000334 ! mesonephric late distal segment (Xenopus) [Term] id: XAO:0000181 name: globe (Xenopus) namespace: xenopus_anatomy def: "A general term for the whole eye, or eye ball, of an organism." [AAO:0010346] synonym: "eye ball" EXACT [] xref: AAO:0010346 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: XAO:0000200 name: animal blastomere (Xenopus) namespace: xenopus_anatomy def: "Pigmented, smaller blastomere of the animal (upper) hemisphere of the cleaving embryo." [ISBN:0471209627] synonym: "micromere" RELATED [] xref: AAO:0010283 is_a: CL:0000353 ! blastoderm cell relationship: develops_from XAO:0000202 ! animal hemisphere (Xenopus) [Term] id: XAO:0000201 name: olfactory apparatus namespace: xenopus_anatomy is_obsolete: true consider: XAO:0000273 ! olfactory organ [Term] id: XAO:0000202 name: animal hemisphere (Xenopus) namespace: xenopus_anatomy def: "In developmental biology, the embryo is divided into two hemispheres: the animal pole or hemisphere and the vegetal pole or hemisphere. The animal hemisphere is the actively dividing hemisphere of the embryo, opposite the vegetal hemisphere, and is pigmented dark brown." [ISBN:3-921015-04-9] xref: AAO:0010325 is_a: UBERON:0001062 ! anatomical entity relationship: part_of CL:0000365 ! zygote [Term] id: XAO:0000203 name: archencephalic region namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0000206 name: blastocoel anlage (Xenopus) namespace: xenopus_anatomy def: "The first appearance of the antomical space that will become the blastocoel." [XB:curator] synonym: "blastocoel anlage" EXACT [] xref: AAO:0010326 is_a: UBERON:0001048 ! primordium relationship: part_of CL:0000365 ! zygote [Term] id: XAO:0000207 name: blastocoel roof (Xenopus) namespace: xenopus_anatomy def: "The dorsal surface of the blastocoel, the cavity of the blastula." [XB:curator] xref: AAO:0010436 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000090 ! blastocele [Term] id: XAO:0000219 name: superficial (epithelial) layer namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0000221 name: deuterencephalic region namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0000222 name: ear placode namespace: xenopus_anatomy is_obsolete: true replaced_by: XAO:0000223 ! otic placode [Term] id: XAO:0000224 name: vegetal part, early involuting (Xenopus) namespace: xenopus_anatomy is_a: XAO:0000074 ! involuting marginal zone (Xenopus) [Term] id: XAO:0000226 name: equatorial belt (Xenopus) namespace: xenopus_anatomy xref: AAO:0010328 is_a: UBERON:0000479 ! tissue relationship: part_of CL:0000365 ! zygote [Term] id: XAO:0000229 name: fasciculated network of fibrils (Xenopus) namespace: xenopus_anatomy synonym: "coelomic envelope" BROAD [] xref: AAO:0010303 is_a: UBERON:0000479 ! tissue relationship: part_of CL:0000023 ! oocyte [Term] id: XAO:0000231 name: follicle layer (Xenopus) namespace: xenopus_anatomy xref: AAO:0010398 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000473 ! testis relationship: part_of UBERON:0000992 ! female gonad [Term] id: XAO:0000233 name: germ plasm (Xenopus) namespace: xenopus_anatomy def: "A zone found in the cytoplasm of the egg cells which contains determinants that will give rise to the germ cell lineage. As the zygote undergoes mitotic divisions the germ plasm is ultimately restricted to a few cells of the embryo. These germ cells then migrate to the gonads." [XB:curator] xref: AAO:0010333 is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0000280 ! vegetal hemisphere (Xenopus) [Term] id: XAO:0000234 name: germinal vesicle (Xenopus) namespace: xenopus_anatomy def: "The nucelus of the oocyte, it is enclosed in a nuclear envelope and contains neucleoplasm, in which the chromosomes and extranucleoli are embedded. It breaks down as the oocyte matures, being no longer visible by the first meiotic metaphase." [XB:curator] synonym: "GV" EXACT [] xref: AAO:0010305 is_a: UBERON:0000479 ! tissue relationship: part_of CL:0000023 ! oocyte [Term] id: XAO:0000239 name: hepato-pancreatic duct (Xenopus) namespace: xenopus_anatomy def: "The pancreatic duct and common bile duct enter the descending duodenum, commonly known together as the hepatopancreatic duct." [XB:curator] is_a: UBERON:0000058 ! duct relationship: develops_from UBERON:0008835 ! hepatic diverticulum relationship: part_of UBERON:0002423 ! hepatobiliary system [Term] id: XAO:0000245 name: mitochondrial aggregate (Xenopus) namespace: xenopus_anatomy xref: AAO:0010306 is_a: UBERON:0000479 ! tissue relationship: part_of CL:0000023 ! oocyte [Term] id: XAO:0000246 name: myocoelic slit (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003082 ! myotome [Term] id: XAO:0000253 name: non-involuting marginal zone (Xenopus) namespace: xenopus_anatomy xref: AAO:0010452 is_a: UBERON:0004879 ! marginal zone of embryo relationship: part_of UBERON:0000924 ! ectoderm [Term] id: XAO:0000257 name: oral evagination (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0001041 ! foregut [Term] id: XAO:0000260 name: perivitelline space (Xenopus) namespace: xenopus_anatomy xref: AAO:0010329 is_a: UBERON:0000464 ! anatomical space relationship: part_of CL:0000365 ! zygote [Term] id: XAO:0000261 name: pigment layer (Xenopus) namespace: xenopus_anatomy xref: AAO:0010350 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004128 ! optic vesicle [Term] id: XAO:0000263 name: primary oogonium (Xenopus) namespace: xenopus_anatomy synonym: "primary oogonia" RELATED PLURAL [] xref: AAO:0010297 is_a: CL:0000586 ! germ cell relationship: develops_from CL:0000670 ! primordial germ cell relationship: part_of UBERON:0000992 ! female gonad [Term] id: XAO:0000267 name: hypophyseal primordium (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001048 ! primordium relationship: develops_from XAO:0000032 ! stomodeal-hypophyseal primordium (Xenopus) [Term] id: XAO:0000268 name: secondary oogonium (Xenopus) namespace: xenopus_anatomy synonym: "secondary oogonia" RELATED PLURAL [] xref: AAO:0010299 is_a: CL:0000586 ! germ cell relationship: develops_from XAO:0000263 ! primary oogonium (Xenopus) [Term] id: XAO:0000270 name: sensorial layer of neurectoderm (Xenopus) namespace: xenopus_anatomy synonym: "deep layer of neurectoderm" RELATED [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: XAO:0000274 name: sperm entry point (Xenopus) namespace: xenopus_anatomy xref: AAO:0010330 is_a: UBERON:0000479 ! tissue relationship: part_of CL:0000365 ! zygote [Term] id: XAO:0000278 name: animal part, late involuting (Xenopus) namespace: xenopus_anatomy def: "When the marginal zone mesoderm undergoes involution, where the marginal zone contacts the vegetal base." [XB:curator] is_a: XAO:0000074 ! involuting marginal zone (Xenopus) [Term] id: XAO:0000279 name: vegetal blastomere (Xenopus) namespace: xenopus_anatomy def: "Unpigmented, larger blastomere of the vegetal (lower) hemisphere of the cleaving embryo." [ISBN:0471209627] synonym: "macromere" RELATED [] xref: AAO:0010284 is_a: CL:0000353 ! blastoderm cell relationship: develops_from XAO:0000280 ! vegetal hemisphere (Xenopus) [Term] id: XAO:0000280 name: vegetal hemisphere (Xenopus) namespace: xenopus_anatomy xref: AAO:0010331 is_a: UBERON:0001062 ! anatomical entity relationship: part_of CL:0000365 ! zygote [Term] id: XAO:0000281 name: vegetal yolk mass (Xenopus) namespace: xenopus_anatomy xref: AAO:0010334 is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0000280 ! vegetal hemisphere (Xenopus) [Term] id: XAO:0000286 name: late proximal tubule (Xenopus) namespace: xenopus_anatomy xref: AAO:0011122 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0005309 ! pronephric nephron [Term] id: XAO:0000288 name: early proximal tubule (Xenopus) namespace: xenopus_anatomy synonym: "pronephric tubule" RELATED [] xref: AAO:0011120 is_a: UBERON:0005310 ! pronephric nephron tubule [Term] id: XAO:0000289 name: late distal segment (Xenopus) namespace: xenopus_anatomy xref: AAO:0011121 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0005309 ! pronephric nephron [Term] id: XAO:0000290 name: pronephric nephron segment S1 namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0000293 name: neural fold namespace: xenopus_anatomy is_obsolete: true replaced_by: XAO:0004087 ! neural fold [Term] id: XAO:0000295 name: central endoderm (Xenopus) namespace: xenopus_anatomy def: "The portion of endoderm between dorsal and ventral blastopore lips, and extending towards to the blastocoel." [XB:curator] synonym: "endodermal yolk mass" RELATED [] synonym: "vegetal endodermal core" RELATED [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000925 ! endoderm [Term] id: XAO:0000310 name: anterior neural fold (Xenopus) namespace: xenopus_anatomy def: "The anterior U-shaped portion of the neural folds, the two longitudinal dorsal ridges, caused by a folding up of the ectoderm, that make their appearance on either side of the middle line of the early neural embryo." [XB:curator] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003056 ! pre-chordal neural plate relationship: part_of UBERON:0005062 ! neural fold [Term] id: XAO:0000320 name: sensorial layer (Xenopus) namespace: xenopus_anatomy def: "The inner layer of ectoderm." [XB:curator] is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: XAO:0000323 name: profundus ganglion (Xenopus) namespace: xenopus_anatomy synonym: "cranial ganglion" RELATED [] synonym: "profundus ganglia" RELATED PLURAL [] is_a: UBERON:0000045 ! ganglion relationship: develops_from XAO:0004093 ! profundal placode (Xenopus) [Term] id: XAO:0000324 name: hypobranchial placode (Xenopus) namespace: xenopus_anatomy def: "Derivative of ectodermal thickening ventral to second and third pharyngeal pouches. Gives rise to neurons of unknown fate." [PMID:12712315] is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003067 ! dorsolateral placode [Term] id: XAO:0000327 name: right spleen primordium (Xenopus) namespace: xenopus_anatomy def: "Transient splenic primordia that degenerates by NF stage 40." [XB:curator] synonym: "spleen" BROAD [] is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm [Term] id: XAO:0000331 name: mesonephric early proximal tubule (Xenopus) namespace: xenopus_anatomy def: "Structure that is equivalent to the convoluted proximal tubule of metanephric nephrons." [XB:curator] xref: AAO:0010392 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0005322 ! mesonephric nephron relationship: part_of UBERON:0000083 ! mesonephric tubule [Term] id: XAO:0000332 name: mesonephric late proximal tubule (Xenopus) namespace: xenopus_anatomy def: "Structure that is the mesonephros nephron's equivalent to the straight proximal segment of a metanephric nephron." [XB:curator] synonym: "opisthonephros" RELATED [] synonym: "proximal straight segment" RELATED [] xref: AAO:0010394 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0005322 ! mesonephric nephron relationship: part_of UBERON:0000083 ! mesonephric tubule [Term] id: XAO:0000334 name: mesonephric late distal segment (Xenopus) namespace: xenopus_anatomy def: "The site of bicarbonate resorption in the adult kidney. It is equivalent to the convoluted distal segment of metanephric nephrons." [XB:curator] xref: AAO:0010393 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0005322 ! mesonephric nephron relationship: part_of UBERON:0000083 ! mesonephric tubule [Term] id: XAO:0000339 name: left channel of ventral aorta (Xenopus) namespace: xenopus_anatomy xref: AAO:0010413 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003085 ! ventral aorta [Term] id: XAO:0000340 name: right channel of ventral aorta (Xenopus) namespace: xenopus_anatomy xref: AAO:0010424 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003085 ! ventral aorta [Term] id: XAO:0000349 name: larval aorta (Xenopus) namespace: xenopus_anatomy def: "The aorta of a postembryonic, hatched or immature tadpole, prior to metamorphosis." [XB:curator] xref: AAO:0010423 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003120 ! aortic arch 3 relationship: develops_from UBERON:0005805 ! dorsal aorta [Term] id: XAO:0000351 name: secondary vessel namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0000354 name: posterior palatine artery (Xenopus) namespace: xenopus_anatomy def: "One of three branches of the internal carotid artery, the palatine artery supplies the mouth region." [PMID:12606281] xref: AAO:0010417 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003118 ! aortic arch 1 [Term] id: XAO:0000362 name: coeliaco-mesenteric artery (Xenopus) namespace: xenopus_anatomy def: "Artery consisting of many branches which supply blood to various organs in the viscus. One of the major blood vessels, branching off the dorsal aorta and supplying the embryonic foregut organs- liver, stomach, intestine, spleen and pancreas." [AAO:0010499, ISBN:0-07-017977-8] xref: AAO:0010499 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0005805 ! dorsal aorta [Term] id: XAO:0000363 name: occipitovertebral artery (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0005805 ! dorsal aorta [Term] id: XAO:0000369 name: anterior palatine artery (Xenopus) namespace: xenopus_anatomy def: "One of three branches of the internal carotid artery, the palatine artery supplies the mouth region." [PMID:12606281] is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0001532 ! internal carotid artery [Term] id: XAO:0000371 name: right lymph heart (Xenopus) namespace: xenopus_anatomy def: "Lymph hearts are pulsatile organs, present in lower vertebrates, that function to propel lymph into the venous system. Two bilaterally symmetrical lymph hearts can be seen adjacent to the somites 3 and 4 by NF stage 40, and can be seen beating by NF stage 43." [PMID:12606281, PMID:20067786] is_a: UBERON:0000489 ! cavitated compound organ relationship: develops_from UBERON:0001919 ! endothelium of vein relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: XAO:0000372 name: left lymph heart (Xenopus) namespace: xenopus_anatomy def: "Lymph hearts are pulsatile organs, present in lower vertebrates, that function to propel lymph into the venous system. Two bilaterally symmetrical lymph hearts can be seen adjacent to the somites 3 and 4 by NF stage 40, and can be seen beating by NF stage 43." [PMID:12606281, PMID:20067786] is_a: UBERON:0000489 ! cavitated compound organ relationship: develops_from UBERON:0001919 ! endothelium of vein relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: XAO:0000374 name: dorsal lymph space (Xenopus) namespace: xenopus_anatomy synonym: "dorsal lymph space" EXACT [] is_a: UBERON:0000464 ! anatomical space relationship: develops_from XAO:0000371 ! right lymph heart (Xenopus) relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: XAO:0000376 name: omphalomesenteric vein (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0001919 ! endothelium of vein [Term] id: XAO:0000377 name: capillary system of liver (Xenopus) namespace: xenopus_anatomy def: "The smallest of the blood vessels, parts of the microcirculation, of the liver." [XB:curator] synonym: "liver capillary" EXACT [] xref: AAO:0010404 is_a: UBERON:0001982 ! capillary relationship: develops_from XAO:0000376 ! omphalomesenteric vein (Xenopus) relationship: part_of UBERON:0002107 ! liver [Term] id: XAO:0000378 name: musculoabdominal vein (Xenopus) namespace: xenopus_anatomy def: "Ventrolateral component of the external jugular vein." [PMID:12606281] is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0001919 ! endothelium of vein [Term] id: XAO:0000380 name: lateral postcardinal vein (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0001919 ! endothelium of vein [Term] id: XAO:0000384 name: medial cardinal vein (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0004344 ! cardinal vein [Term] id: XAO:0000386 name: interrenal vein (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001638 ! vein relationship: develops_from XAO:0000384 ! medial cardinal vein (Xenopus) [Term] id: XAO:0000391 name: subinterstitial vein (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0001919 ! endothelium of vein [Term] id: XAO:0000395 name: medial abdominal vein (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0001919 ! endothelium of vein [Term] id: XAO:0000396 name: head somite 1 (Xenopus) namespace: xenopus_anatomy def: "Transient occipital somite that exists from NF stages 17 to 26 only." [XB:curator] synonym: "somite W" RELATED [PMID:2769206] is_a: UBERON:0005594 ! head somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000399 name: tendon fibroblast (Xenopus) namespace: xenopus_anatomy is_a: CL:0000057 ! fibroblast relationship: develops_from UBERON:0003089 ! sclerotome [Term] id: XAO:0000401 name: sclerotomal cartilage (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003089 ! sclerotome [Term] id: XAO:0000403 name: head somite 2 (Xenopus) namespace: xenopus_anatomy def: "Transient occipital somite that exists from NF stages 18 to 29 only." [XB:curator] synonym: "somite X" RELATED [PMID:2769206] is_a: UBERON:0005594 ! head somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000404 name: head somite 3 (Xenopus) namespace: xenopus_anatomy def: "Transient occipital somite that exists from NF stages 18 to 29/30 only." [XB:curator] synonym: "somite Y" RELATED [PMID:2769206] is_a: UBERON:0005594 ! head somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000405 name: head somite 4 (Xenopus) namespace: xenopus_anatomy def: "Transient occipital somite that exists from NF stages 19 to late 30's." [XB:curator] synonym: "somite Z" RELATED [PMID:2769206] is_a: UBERON:0005594 ! head somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000406 name: trunk somite 1 (Xenopus) namespace: xenopus_anatomy def: "Trunk somite that is initially the 5th somite, first forming around NF stage 19 and becoming more anteriorly positioned as the head somites degenerate. It is the most anterior somite by NF stage 45 and is adjacent to the otic vesicle." [ISBN:0815318960] synonym: "fifth somite" RELATED [] is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000407 name: trunk somite 2 (Xenopus) namespace: xenopus_anatomy def: "Trunk somite that is initially the sixth somite." [ISBN:0815318960] is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000408 name: trunk somite 3 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000409 name: trunk somite 4 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000410 name: trunk somite 5 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000411 name: trunk somite 6 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000412 name: trunk somite 7 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000414 name: sclerotomal mesenchyme (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003089 ! sclerotome [Term] id: XAO:0000415 name: notochordal sheath (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0002050 ! embryonic structure relationship: develops_from XAO:0000414 ! sclerotomal mesenchyme (Xenopus) relationship: part_of UBERON:0002328 ! notochord [Term] id: XAO:0000416 name: trunk somite 8 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000417 name: trunk somite 9 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000418 name: trunk somite 10 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000419 name: trunk somite 11 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000420 name: trunk somite 12 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000421 name: trunk somite 13 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000422 name: trunk somite 14 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000423 name: trunk somite 15 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000424 name: trunk somite 16 (Xenopus) namespace: xenopus_anatomy def: "Trunk somite that forms at NF stage 28, by which time head somite 1 has degenerated." [XB:curator] is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000425 name: trunk somite 17 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0005598 ! trunk somite relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: XAO:0000429 name: cephalic nerve (Xenopus) namespace: xenopus_anatomy def: "Any of the major nerves of the head or cephalic region. Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [XB:curator] synonym: "cranial nerve" BROAD [] xref: AAO:0000108 is_a: UBERON:0001785 ! cranial nerve [Term] id: XAO:0000439 name: filter chamber (Xenopus) namespace: xenopus_anatomy def: "Xenopus tadpoles are suspension feeders, and the filter apparatus enables them to trap food particles. In Xenopus the palatoquadrate, ceratohyal and the connecting muscles are responsible for the irrigation and ventilation of the filter apparatus." [XB:curator] synonym: "coelom" RELATED [] synonym: "coelomic filter chamber" RELATED [] synonym: "peribranchial chamber" EXACT [] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: XAO:0000441 name: infraorbital lateral line primordium (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0009128 ! lateral line placode [Term] id: XAO:0000443 name: trunk lateral line (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0010202 ! lateral line relationship: develops_from UBERON:0009128 ! lateral line placode relationship: part_of UBERON:0002540 ! lateral line system [Term] id: XAO:0000450 name: epithelial body (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0003114 ! pharyngeal arch 3 relationship: develops_from UBERON:0007123 ! pharyngeal pouch 2 relationship: part_of UBERON:0000949 ! endocrine system [Term] id: XAO:0000460 name: hyomandibular lateral line (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0010202 ! lateral line relationship: develops_from XAO:0000441 ! infraorbital lateral line primordium (Xenopus) relationship: part_of UBERON:0002540 ! lateral line system [Term] id: XAO:0000461 name: trunk placode (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0002050 ! embryonic structure relationship: develops_from XAO:0000320 ! sensorial layer (Xenopus) [Term] id: XAO:0000464 name: ventral lateral line (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0010202 ! lateral line relationship: develops_from XAO:0000461 ! trunk placode (Xenopus) relationship: part_of UBERON:0002540 ! lateral line system [Term] id: XAO:0000470 name: unicellular gland (Xenopus) namespace: xenopus_anatomy def: "Any of the large number of glands of the larval skin, particularly common in the fins and adjacent skin of the trunk; also formed in the former frontal gland area on the upper jaw." [ISBN:0815318960] xref: AAO:0010377 is_a: UBERON:0003102 ! surface structure relationship: develops_from XAO:0000320 ! sensorial layer (Xenopus) [Term] id: XAO:0001012 name: Stirnorgan (Xenopus) namespace: xenopus_anatomy synonym: "frontal organ" RELATED [] is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0001905 ! pineal body relationship: part_of UBERON:0002104 ! visual system [Term] id: XAO:0001016 name: abdominal myoblast (Xenopus) namespace: xenopus_anatomy def: "The myoblast that forms the muscles of the anterior abdominal walls." [AAO:0010314] synonym: "abdominal musculature" RELATED [] xref: AAO:0010314 is_a: CL:0000056 ! myoblast relationship: part_of UBERON:0000926 ! mesoderm relationship: part_of UBERON:0003082 ! myotome [Term] id: XAO:0001018 name: anterior lymph sac (Xenopus) namespace: xenopus_anatomy def: "The protrusion of mesenchymal tissue of the anterior cardinal vein which form lymph sacs." [PMID:17062017] synonym: "rostral lymph sac" RELATED [] is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0001919 ! endothelium of vein relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: XAO:0001020 name: elastica externa (Xenopus) namespace: xenopus_anatomy def: "Notochordal sheath or membrane. Its first indication is at NF stage 24, and it is a distinct membrane by NF stage 28." [ISBN:0815318960] synonym: "notochordal sheath" RELATED [] is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0002328 ! notochord [Term] id: XAO:0001021 name: notochordal epithelium (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000483 ! epithelium relationship: develops_from UBERON:0002328 ! notochord [Term] id: XAO:0001102 name: second pancreatic bud (Xenopus) namespace: xenopus_anatomy synonym: "pancreas" BROAD [] is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0001041 ! foregut [Term] id: XAO:0003018 name: primary spermatogonium (Xenopus) namespace: xenopus_anatomy synonym: "primary spermatogonia" RELATED PLURAL [] xref: AAO:0010298 is_a: CL:0000586 ! germ cell relationship: develops_from CL:0000670 ! primordial germ cell relationship: part_of UBERON:0000473 ! testis [Term] id: XAO:0003020 name: secondary spermatogonium (Xenopus) namespace: xenopus_anatomy synonym: "secondary spermatogonia" RELATED PLURAL [] xref: AAO:0010300 is_a: CL:0000586 ! germ cell relationship: develops_from XAO:0003018 ! primary spermatogonium (Xenopus) [Term] id: XAO:0003021 name: spinal cord neuron namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003058 name: larval structure namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003067 name: fore epipodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003068 name: fore mesopodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003069 name: hind propodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003070 name: hind metapodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003071 name: fore propodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003072 name: hind epipodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003082 name: sucker namespace: xenopus_anatomy is_obsolete: true consider: XAO:0000033 ! cement gland [Term] id: XAO:0003083 name: braincase and otic capsule skeleton (Xenopus) namespace: xenopus_anatomy def: "Skeleton encasing the brain and auditory apparatus." [ISBN:0-07-017977-8] xref: AAO:0000052 is_a: UBERON:0001434 ! skeletal system relationship: part_of UBERON:0003128 ! cranium [Term] id: XAO:0003104 name: myotome of head somite 1 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000396 ! head somite 1 (Xenopus) [Term] id: XAO:0003105 name: myotome of head somite 2 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000403 ! head somite 2 (Xenopus) [Term] id: XAO:0003106 name: myotome of head somite 3 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000404 ! head somite 3 (Xenopus) [Term] id: XAO:0003107 name: myotome of head somite 4 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000405 ! head somite 4 (Xenopus) [Term] id: XAO:0003108 name: myotome of trunk somite 1 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000406 ! trunk somite 1 (Xenopus) [Term] id: XAO:0003109 name: myotome of trunk somite 2 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000407 ! trunk somite 2 (Xenopus) [Term] id: XAO:0003110 name: myotome of trunk somite 3 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000408 ! trunk somite 3 (Xenopus) [Term] id: XAO:0003111 name: myotome of trunk somite 4 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000409 ! trunk somite 4 (Xenopus) [Term] id: XAO:0003112 name: sclerotome of head somite 4 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000405 ! head somite 4 (Xenopus) [Term] id: XAO:0003113 name: sclerotome of trunk somite 1 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000406 ! trunk somite 1 (Xenopus) [Term] id: XAO:0003114 name: sclerotome of trunk somite 2 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000407 ! trunk somite 2 (Xenopus) [Term] id: XAO:0003115 name: sclerotome of trunk somite 3 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000408 ! trunk somite 3 (Xenopus) [Term] id: XAO:0003116 name: sclerotome of trunk somite 4 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000409 ! trunk somite 4 (Xenopus) [Term] id: XAO:0003117 name: myotome of trunk somite 5 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000410 ! trunk somite 5 (Xenopus) [Term] id: XAO:0003118 name: myotome of trunk somite 6 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000411 ! trunk somite 6 (Xenopus) [Term] id: XAO:0003119 name: myotome of trunk somite 7 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000412 ! trunk somite 7 (Xenopus) [Term] id: XAO:0003120 name: myotome of trunk somite 8 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000416 ! trunk somite 8 (Xenopus) [Term] id: XAO:0003121 name: sclerotome of trunk somite 5 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000410 ! trunk somite 5 (Xenopus) [Term] id: XAO:0003122 name: sclerotome of trunk somite 6 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000411 ! trunk somite 6 (Xenopus) [Term] id: XAO:0003123 name: sclerotome of trunk somite 7 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000412 ! trunk somite 7 (Xenopus) [Term] id: XAO:0003124 name: sclerotome of trunk somite 8 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000416 ! trunk somite 8 (Xenopus) [Term] id: XAO:0003125 name: myotome of trunk somite 9 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000417 ! trunk somite 9 (Xenopus) [Term] id: XAO:0003126 name: sclerotome of trunk somite 9 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000417 ! trunk somite 9 (Xenopus) [Term] id: XAO:0003127 name: sclerotome of trunk somite 10 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000418 ! trunk somite 10 (Xenopus) [Term] id: XAO:0003128 name: myotome of trunk somite 10 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000418 ! trunk somite 10 (Xenopus) [Term] id: XAO:0003129 name: sclerotome of trunk somite 11 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000419 ! trunk somite 11 (Xenopus) [Term] id: XAO:0003130 name: myotome of trunk somite 11 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000419 ! trunk somite 11 (Xenopus) [Term] id: XAO:0003131 name: sclerotome of trunk somite 12 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000420 ! trunk somite 12 (Xenopus) [Term] id: XAO:0003132 name: myotome of trunk somite 12 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000420 ! trunk somite 12 (Xenopus) [Term] id: XAO:0003133 name: sclerotome of trunk somite 13 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000421 ! trunk somite 13 (Xenopus) [Term] id: XAO:0003134 name: myotome of trunk somite 13 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000421 ! trunk somite 13 (Xenopus) [Term] id: XAO:0003135 name: sclerotome of trunk somite 14 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000422 ! trunk somite 14 (Xenopus) [Term] id: XAO:0003136 name: myotome of trunk somite 14 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000422 ! trunk somite 14 (Xenopus) [Term] id: XAO:0003137 name: sclerotome of trunk somite 15 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000423 ! trunk somite 15 (Xenopus) [Term] id: XAO:0003138 name: myotome of trunk somite 15 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000423 ! trunk somite 15 (Xenopus) [Term] id: XAO:0003139 name: sclerotome of trunk somite 16 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000424 ! trunk somite 16 (Xenopus) [Term] id: XAO:0003140 name: myotome of trunk somite 16 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000424 ! trunk somite 16 (Xenopus) [Term] id: XAO:0003141 name: sclerotome of trunk somite 17 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003089 ! sclerotome relationship: develops_from XAO:0000425 ! trunk somite 17 (Xenopus) [Term] id: XAO:0003142 name: myotome of trunk somite 17 (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003082 ! myotome relationship: develops_from XAO:0000425 ! trunk somite 17 (Xenopus) [Term] id: XAO:0003144 name: amphibian papilla (Xenopus) namespace: xenopus_anatomy def: "The principal auditory organ of frog that utilizes both mechanical and electrical (hair cell-based) frequency tuning mechanisms for hearing, located near the junction of the utricle and the saccule bones of the inner ear." [PMID:10377339] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001846 ! internal ear [Term] id: XAO:0003153 name: larval immune system (Xenopus) namespace: xenopus_anatomy def: "The immune system of a postembryonic, hatched or immature tadpole, prior to metamorphosis." [XB:curator] is_a: UBERON:0002405 ! immune system [Term] id: XAO:0003154 name: adult immune system (Xenopus) namespace: xenopus_anatomy def: "The complete system of biological structures and processes within the adult organism that protects against disease by identifying and killing pathogens and tumor cells." [XB:curator] xref: AAO:0011003 is_a: UBERON:0002405 ! immune system [Term] id: XAO:0003167 name: fore metapodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003168 name: hind mesopodium namespace: xenopus_anatomy is_obsolete: true [Term] id: XAO:0003178 name: dorsal hyoid arch skeleton (Xenopus) namespace: xenopus_anatomy xref: AAO:0010371 is_a: UBERON:0005884 ! hyoid arch skeleton [Term] id: XAO:0003179 name: ventral hyoid arch skeleton (Xenopus) namespace: xenopus_anatomy xref: AAO:0010372 is_a: UBERON:0005884 ! hyoid arch skeleton [Term] id: XAO:0003181 name: branchial arch skeleton 1 (Xenopus) namespace: xenopus_anatomy def: "Skeletal and cartilaginous elements of the first branchial or pharyngeal arch." [XB:curator] is_a: UBERON:0005886 ! pharyngeal arch 3-7 skeleton relationship: part_of UBERON:0003114 ! pharyngeal arch 3 [Term] id: XAO:0003182 name: branchial arch skeleton 2 (Xenopus) namespace: xenopus_anatomy def: "Skeletal and cartilaginous elements of the second branchial or pharyngeal arch." [XB:curator] is_a: UBERON:0005886 ! pharyngeal arch 3-7 skeleton relationship: part_of UBERON:0003115 ! pharyngeal arch 4 [Term] id: XAO:0003183 name: branchial arch skeleton 3 (Xenopus) namespace: xenopus_anatomy def: "Skeletal and cartilaginous elements of the third branchial or pharyngeal arch." [XB:curator] is_a: UBERON:0005886 ! pharyngeal arch 3-7 skeleton relationship: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: XAO:0003184 name: branchial arch skeleton 4 (Xenopus) namespace: xenopus_anatomy def: "Skeletal and cartilaginous elements of the forth branchial or pharyngeal arch." [XB:curator] is_a: UBERON:0005886 ! pharyngeal arch 3-7 skeleton relationship: part_of UBERON:0003117 ! pharyngeal arch 6 [Term] id: XAO:0003268 name: cardiac progenitor cell (Xenopus) namespace: xenopus_anatomy def: "" [] synonym: "CPC" EXACT [] is_a: CL:0000000 ! cell relationship: part_of UBERON:0003084 ! heart primordium [Term] id: XAO:0004016 name: replacement element (Xenopus) namespace: xenopus_anatomy def: "Skeletal element that forms as a replacement or substitution of another element or tissue." [VAO:0000135] xref: VAO:0000135 is_a: UBERON:0004765 ! skeletal element [Term] id: XAO:0004017 name: endochondral element (Xenopus) namespace: xenopus_anatomy def: "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VAO:0000139] xref: VAO:0000139 is_a: XAO:0004016 ! replacement element (Xenopus) [Term] id: XAO:0004021 name: cell condensation (Xenopus) namespace: xenopus_anatomy def: "Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995)." [VAO:0000006] xref: VAO:0000006 is_a: UBERON:0000061 ! anatomical structure [Term] id: XAO:0004023 name: craniofacial skeleton (Xenopus) namespace: xenopus_anatomy def: "Cranial skeleton derived from neural crest cells." [VAO:00000082] synonym: "cranio-facial skeleton" EXACT [] xref: VAO:0000082 is_a: UBERON:0000477 ! anatomical cluster [Term] id: XAO:0004024 name: craniofacial region (Xenopus) namespace: xenopus_anatomy xref: VAO:0000083 is_a: UBERON:0000477 ! anatomical cluster [Term] id: XAO:0004025 name: dermal skeleton (Xenopus) namespace: xenopus_anatomy def: "Skeletal system that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements." [VAO:00000035] synonym: "dermal skeletal system" RELATED [] synonym: "dermoskeleton" RELATED [] synonym: "desmoskeleton" RELATED [] synonym: "exoskeleton" RELATED [] xref: VAO:0000035 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0004288 ! skeleton [Term] id: XAO:0004026 name: endoskeleton (Xenopus) namespace: xenopus_anatomy def: "Skeletal system that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues." [VAO:0000037] synonym: "replacement skeleton" EXACT [] xref: VAO:0000037 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0004288 ! skeleton [Term] id: XAO:0004027 name: extracellular matrix (Xenopus) namespace: xenopus_anatomy def: "Combination of protein fibers, ground substance and tissue fluid; typically has embedded cells." [VAO:0000022] synonym: "ECM" EXACT [] xref: VAO:0000022 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: XAO:0004032 name: proteinaceous extracellular matrix (Xenopus) namespace: xenopus_anatomy def: "A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity." [VAO:0000021] xref: VAO:0000021 is_a: XAO:0004027 ! extracellular matrix (Xenopus) [Term] id: XAO:0004033 name: avascular GAG-rich matrix (Xenopus) namespace: xenopus_anatomy def: "Proteinaceous extracellular matrix that is avascular and consists primarily of glycosaminoglycans." [VAO:0000059] synonym: "avascular glycosaminoglycan-rich matrix" EXACT [] synonym: "cartilage matrix" EXACT [] synonym: "cartilage-like matrix" EXACT [] xref: VAO:0000059 is_a: XAO:0004032 ! proteinaceous extracellular matrix (Xenopus) [Term] id: XAO:0004034 name: mineralized extracellular matrix (Xenopus) namespace: xenopus_anatomy def: "Extracellular matrix that is mineralized." [VAO:0000020] xref: VAO:0000020 is_a: XAO:0004032 ! proteinaceous extracellular matrix (Xenopus) [Term] id: XAO:0004036 name: mineralized avascular GAG-rich matrix (Xenopus) namespace: xenopus_anatomy def: "Avascular GAG-rich matrix that is mineralized." [VAO:0000120] xref: VAO:0000120 is_a: XAO:0004033 ! avascular GAG-rich matrix (Xenopus) is_a: XAO:0004034 ! mineralized extracellular matrix (Xenopus) relationship: part_of XAO:0004055 ! mineralized cartilage tissue (Xenopus) [Term] id: XAO:0004037 name: non-mineralized avascular GAG-rich matrix (Xenopus) namespace: xenopus_anatomy def: "Avascular GAG-rich matrix that is not mineralized." [VAO:0000119] synonym: "non-mineralized cartilage" EXACT [] xref: VAO:0000119 is_a: XAO:0004033 ! avascular GAG-rich matrix (Xenopus) relationship: part_of XAO:0004043 ! non-mineralized cartilage tissue (Xenopus) [Term] id: XAO:0004039 name: mineralized tissue (Xenopus) namespace: xenopus_anatomy xref: VAO:0000013 is_a: UBERON:0004755 ! skeletal tissue [Term] id: XAO:0004040 name: mineralized bone tissue (Xenopus) namespace: xenopus_anatomy def: "Bone tissue mineralized with hydroxyapatite." [VAO:0000115] xref: VAO:0000115 is_a: UBERON:0001474 ! bone is_a: XAO:0004039 ! mineralized tissue (Xenopus) relationship: develops_from UBERON:0008883 ! osteoid relationship: part_of XAO:0004034 ! mineralized extracellular matrix (Xenopus) [Term] id: XAO:0004041 name: mineralized hyaline cartilage tissue (Xenopus) namespace: xenopus_anatomy def: "Hyaline cartilage tissue that is mineralized." [VAO:0000109] xref: VAO:0000109 is_a: XAO:0004039 ! mineralized tissue (Xenopus) [Term] id: XAO:0004043 name: non-mineralized cartilage tissue (Xenopus) namespace: xenopus_anatomy def: "Cartilage tissue that is not mineralized." [VAO:0000089] xref: VAO:0000089 is_a: UBERON:0002418 ! cartilage tissue [Term] id: XAO:0004044 name: non-mineralized hyaline cartilage tissue (Xenopus) namespace: xenopus_anatomy def: "Hyaline cartilage tissue that is not mineralized." [VAO:0000108] xref: VAO:0000108 is_a: UBERON:0001994 ! hyaline cartilage is_a: XAO:0004043 ! non-mineralized cartilage tissue (Xenopus) [Term] id: XAO:0004046 name: odontoid tissue (Xenopus) namespace: xenopus_anatomy def: "Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla." [VAO:0000063] synonym: "dental tissue" RELATED [] synonym: "odontogenic tissue" EXACT [] xref: VAO:0000063 is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:0001763 ! dental papilla relationship: part_of XAO:0004025 ! dermal skeleton (Xenopus) [Term] id: XAO:0004047 name: oropharyngeal papilla (Xenopus) namespace: xenopus_anatomy def: "Odontogenic papilla located along the jaws or pharyngeal skeleton." [VAO:0000030] synonym: "oropharyngeal dental papilla" EXACT [] xref: VAO:0000030 is_a: UBERON:0001763 ! dental papilla [Term] id: XAO:0004052 name: pre-dentine (Xenopus) namespace: xenopus_anatomy def: "Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix." [VAO:0000071] synonym: "pre-dentine tissue" EXACT [] xref: VAO:0000071 is_a: XAO:0004046 ! odontoid tissue (Xenopus) [Term] id: XAO:0004054 name: vacuolated notochordal tissue (Xenopus) namespace: xenopus_anatomy def: "Connective tissue that is matrix-poor with large number of vacuolated cells." [VAO:0000053] synonym: "notochord proper" EXACT [] xref: VAO:0000053 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002328 ! notochord [Term] id: XAO:0004055 name: mineralized cartilage tissue (Xenopus) namespace: xenopus_anatomy def: "Cartilage tissue that is mineralized." [VAO:0000088] xref: VAO:0000088 is_a: UBERON:0002418 ! cartilage tissue [Term] id: XAO:0004056 name: distal mesenchyme (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0003104 ! mesenchyme [Term] id: XAO:0004058 name: ampullary nerve (Xenopus) namespace: xenopus_anatomy def: "Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris." [ZFA:0005144] synonym: "neural ampulla" EXACT [] xref: ZFA:0005144 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: XAO:0004061 name: dorsal fin margin (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003097 ! dorsal fin relationship: part_of XAO:0004063 ! dorsal fin (Xenopus) [Term] id: XAO:0004062 name: tail fin (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0008897 ! fin relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: XAO:0004063 name: dorsal fin (Xenopus) namespace: xenopus_anatomy def: "The unsupported flaps of epidermis-covered, loose connective tissue extending the length of the dorsal tail muscle, originating at or near the tail-body junction, and extending posteriorly to slightly beyond the tip of the notochord and tail musculature." [ISBN:0-226-55763-4] xref: AAO:0010378 is_a: UBERON:0008897 ! fin [Term] id: XAO:0004064 name: ventral tail fin (Xenopus) namespace: xenopus_anatomy xref: AAO:0010204 is_a: UBERON:0008897 ! fin [Term] id: XAO:0004065 name: ventral fin margin (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0004064 ! ventral tail fin (Xenopus) [Term] id: XAO:0004066 name: vegetal endoderm (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000925 ! endoderm [Term] id: XAO:0004067 name: suprablastoporal endoderm (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000925 ! endoderm [Term] id: XAO:0004068 name: sub-blastoporal endoderm (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000925 ! endoderm [Term] id: XAO:0004069 name: neural crest migrating cell (Xenopus) namespace: xenopus_anatomy synonym: "neural crest migrating cells" RELATED PLURAL [] is_a: CL:0000000 ! cell relationship: part_of UBERON:0002342 ! neural crest [Term] id: XAO:0004073 name: olfactory pit (Xenopus) namespace: xenopus_anatomy xref: ZFA:0000130 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005725 ! olfactory system [Term] id: XAO:0004075 name: intersomitic vessel (Xenopus) namespace: xenopus_anatomy synonym: "intersomitic blood vessel" EXACT [] xref: ZFA:0001285 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: XAO:0004076 name: intersomitic tendon (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000043 ! tendon [Term] id: XAO:0004077 name: intersomitic epithelium (Xenopus) namespace: xenopus_anatomy synonym: "intersomitic membrane" EXACT [] is_a: UBERON:0000483 ! epithelium [Term] id: XAO:0004078 name: intersomitic neuron (Xenopus) namespace: xenopus_anatomy is_a: CL:0000540 ! neuron [Term] id: XAO:0004092 name: preplacodal ectoderm (Xenopus) namespace: xenopus_anatomy def: "The field of naive ectoderm at the anterior of the neural stage embryo. It is positioned at the border between the future epidermis and the anterior neural plate/neural crest forming regions and is subdivided into 2 distinct domains: the anterior placodal region which is anterior to the neural plate, and the posterior placodal area which is lateral to the neural crest." [ISBN:0878933840] synonym: "PPE" EXACT [] synonym: "pre-placodal ectoderm" EXACT [] xref: ZFA:0007013 is_a: UBERON:0005497 ! non-neural ectoderm [Term] id: XAO:0004093 name: profundal placode (Xenopus) namespace: xenopus_anatomy def: "An embryonic structure positioned halfway between the prospective eye and ear, adjacent to the future midbrain-hindbrain boundary. The profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." [PMID:21452441] synonym: "profundus placode" EXACT [] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002346 ! neurectoderm [Term] id: XAO:0004095 name: lens transitional zone (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: XAO:0004102 name: pre-chordal neural plate border (Xenopus) namespace: xenopus_anatomy synonym: "anterior neural plate border" RELATED [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003056 ! pre-chordal neural plate relationship: part_of XAO:0004104 ! neural plate border (Xenopus) [Term] id: XAO:0004103 name: chordal neural plate border (Xenopus) namespace: xenopus_anatomy is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003057 ! chordal neural plate relationship: part_of XAO:0004104 ! neural plate border (Xenopus) [Term] id: XAO:0004104 name: neural plate border (Xenopus) namespace: xenopus_anatomy def: "The boundary between non-neural ectoderm and the neural plate of neural stage embryos, and give rise to the neural crest and cranial placodes." [ISBN:0878933840] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003075 ! neural plate [Term] id: XAO:0004106 name: regenerating forelimb (Xenopus) namespace: xenopus_anatomy def: "A portion of forelimb tissue that is re-growing after damage or amputation." [XB:curator] synonym: "forelimb" BROAD [] is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:0005306 ! blastema [Term] id: XAO:0004107 name: regenerating hind limb (Xenopus) namespace: xenopus_anatomy def: "A portion of hind limb tissue that is re-growing after damage or amputation." [XB:curator] synonym: "hind limb" BROAD [] is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:0005306 ! blastema [Term] id: XAO:0004108 name: regenerating tail (Xenopus) namespace: xenopus_anatomy def: "A portion of tail tissue that is re-growing after damage or amputation." [XB:curator] synonym: "tail" BROAD [] is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:0005306 ! blastema [Term] id: XAO:0004109 name: regenerating eye (Xenopus) namespace: xenopus_anatomy def: "A portion of eye tissue that is re-growing after damage or amputation." [XB:curator] synonym: "eye" BROAD [] is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:0005306 ! blastema [Term] id: XAO:0004114 name: stage I oocyte (Xenopus) namespace: xenopus_anatomy def: "The developing female gamete of the pre-vitellogenic stage." [XB:curator] synonym: "pre-vitellogenic oocyte" EXACT [] is_a: CL:0000023 ! oocyte [Term] id: XAO:0004115 name: stage II oocyte (Xenopus) namespace: xenopus_anatomy def: "The developing female gamete of the early vitellogenic stage." [XB:curator] synonym: "early vitellogenic oocyte" EXACT [] is_a: CL:0000023 ! oocyte [Term] id: XAO:0004116 name: stage III oocyte (Xenopus) namespace: xenopus_anatomy def: "The developing female gamete of the mid-vitellogenic stage." [XB:curator] synonym: "mid-vitellogenic oocyte" EXACT [] is_a: CL:0000023 ! oocyte [Term] id: XAO:0004117 name: stage IV oocyte (Xenopus) namespace: xenopus_anatomy def: "The stage in the developing female gamete where polarization along the animal-vegetal axis is established." [XB:curator] is_a: CL:0000023 ! oocyte [Term] id: XAO:0004118 name: stage V oocyte (Xenopus) namespace: xenopus_anatomy synonym: "late vitellogenic oocyte" EXACT [] is_a: CL:0000023 ! oocyte [Term] id: XAO:0004119 name: stage VI oocyte (Xenopus) namespace: xenopus_anatomy synonym: "post-vitellogenic oocyte" EXACT [] is_a: CL:0000023 ! oocyte [Term] id: XAO:0004122 name: proliferative region (Xenopus) namespace: xenopus_anatomy def: "Anatomical cluster which consists of rapidly dividing cells." [ZFA:0000098] xref: ZFA:0000098 is_a: UBERON:0000477 ! anatomical cluster [Term] id: XAO:0004125 name: atrioventricular valve leaflet (Xenopus) namespace: xenopus_anatomy synonym: "atrioventricular valve leaflets" RELATED PLURAL [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000948 ! heart [Term] id: XAO:0004128 name: rectus abdominus (Xenopus) namespace: xenopus_anatomy def: "One of the 3 hypaxial muscles." [XB:curator] is_a: UBERON:0008777 ! hypaxial musclulature [Term] id: XAO:0004129 name: rectus cervicus (Xenopus) namespace: xenopus_anatomy def: "One of the 3 hypaxial muscles." [XB:curator] is_a: UBERON:0008777 ! hypaxial musclulature [Term] id: XAO:0004131 name: horizontal crista (Xenopus) namespace: xenopus_anatomy def: "A horizontal patch of cristae/sensory epithelia cells of the inner ear." [PMID:20201105] is_a: CL:0000098 ! sensory epithelial cell relationship: part_of UBERON:0001846 ! internal ear [Term] id: XAO:0004144 name: anterior ventral blood island (Xenopus) namespace: xenopus_anatomy def: "Region that is overlapping, anterior, and dorsal to the main body of the ventral blood island." [PMID:21069823] synonym: "aVBI" EXACT [] synonym: "blood island" BROAD [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002390 ! hematopoietic system [Term] id: XAO:0004159 name: posterior cerebral vein (Xenopus) namespace: xenopus_anatomy def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. The cerebral veins cross the head dorsally at NF stage 37-38. It drains into the vena capitis lateralis." [PMID:12606281, ZFA:0005027] xref: ZFA:0005027 is_a: UBERON:0001663 ! cerebral vein [Term] id: XAO:0004161 name: middle cerebral vein (Xenopus) namespace: xenopus_anatomy def: "The middle cerebral veins cross the head dorsally at NF stage 37-38. It drains into the vena capitis lateralis." [PMID:12606281] synonym: "mid cerebral vein" EXACT [] synonym: "mid-cerebral vein" EXACT [] xref: ZFA:0005010 is_a: UBERON:0001663 ! cerebral vein [Term] id: XAO:0004164 name: intersomitic vein (Xenopus) namespace: xenopus_anatomy def: "Veins that sprout from the posterior cardinal vein, growing dorsally between the somites, and will join, and drain the dorsal longitudinal anastomosing vessel." [PMID:12606281] is_a: XAO:0004075 ! intersomitic vessel (Xenopus) [Term] id: XAO:0004166 name: left omphalomesenteric vein (Xenopus) namespace: xenopus_anatomy def: "In the trunk region, the subintestinal vein drains into the omphalomesenteric veins, which breaks up to merge with the vitelline network at NF stage 40." [PMID:12606281] is_a: XAO:0000376 ! omphalomesenteric vein (Xenopus) relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: XAO:0004167 name: metencephalic artery (Xenopus) namespace: xenopus_anatomy def: "The artery that crosses the brain dorsally, and meets the metencephalic vein." [PMID:12606281] xref: ZFA:0005084 is_a: UBERON:0001637 ! artery [Term] id: XAO:0004168 name: metencephalic vein (Xenopus) namespace: xenopus_anatomy def: "The vein that crosses the brain dorsally, parallel with the mid-cerebral vein, and meets the metencephalic artery." [PMID:12606281] is_a: UBERON:0001638 ! vein [Term] id: XAO:0004169 name: ophthalmic vein (Xenopus) namespace: xenopus_anatomy def: "The dorsal branch/remnant of the vena capitis medialis, that drains blood from the eye. Together with the opthalmic artery, form a double ring encircling the eye and retina." [PMID:12606281] is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0004535 ! cardiovascular system relationship: part_of XAO:0004170 ! vena capitas medialis (Xenopus) [Term] id: XAO:0004170 name: vena capitas medialis (Xenopus) namespace: xenopus_anatomy def: "One of the major dorsal head veins which drains into the anterior cardinal vein, the other being the vena capitas lateralis." [PMID:12606281] synonym: "VCM" EXACT [] is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: XAO:0004171 name: vena capitas lateralis (Xenopus) namespace: xenopus_anatomy def: "One of the major dorsal head veins which drains into the anterior cardinal vein, the other being the vena capitas medialis." [PMID:12606281] is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: XAO:0004172 name: subintestinal vein (Xenopus) namespace: xenopus_anatomy def: "The subintestinal vein is formed from and drains into the left omphalomesentric vein, and by NF stage 40, it is on the left side of the gut. It moves to the most ventral aspect of the gut during NFstage 41, and is on the right side of the gut by NF stage43." [PMID:12606281] xref: ZFA:0005035 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0004535 ! cardiovascular system relationship: part_of UBERON:0010204 ! tail vasculature [Term] id: XAO:0004175 name: nasociliary artery (Xenopus) namespace: xenopus_anatomy def: "The main artery of the olfactory region which arises from the cerebral artery at NF stage 41." [PMID:12606281] is_a: UBERON:0001637 ! artery [Term] id: XAO:0004177 name: dorsal longitudinal anastomosing vessel (Xenopus) namespace: xenopus_anatomy def: "Intersomitc vessels enter the dlav in a regular pattern at each intersomitic junction. Posterior to the gut, the dlav drains into the fused posterior cardinal vein by a minor right branch and a major left branch. By NF stage 36 the dlav extends fully to the tip of the tail." [PMID:12606281] synonym: "DLAV" EXACT [] xref: ZFA:0005025 is_a: UBERON:0001981 ! blood vessel [Term] id: XAO:0004178 name: dorsal longitudinal anastomosing vessel- left branch (Xenopus) namespace: xenopus_anatomy def: "The major (left ) branch of the dorsal longitudinal anastomosing vessel (dlav), remains as the sole branch after the right branch breaks up at stage 44." [PMID:12606281] synonym: "DLAV - left branch" RELATED [] is_a: XAO:0004177 ! dorsal longitudinal anastomosing vessel (Xenopus) [Term] id: XAO:0004179 name: dorsal longitudinal anastomosing vessel- right branch (Xenopus) namespace: xenopus_anatomy def: "The minor (right) branch of the dorsal longitudinal anastomosing vessel (dlav), the right branch disappears during NF stage 44." [PMID:12606281] synonym: "DLAV - right branch" EXACT [] is_a: XAO:0004177 ! dorsal longitudinal anastomosing vessel (Xenopus) [Term] id: XAO:0004183 name: pericardial muscle (Xenopus) namespace: xenopus_anatomy def: "Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium." [ZFA:0001653] xref: ZFA:0001653 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: XAO:0004184 name: pericardial roof (Xenopus) namespace: xenopus_anatomy def: "The dorsal region of the pericardium." [PMID:18598690] is_a: UBERON:0000479 ! tissue [Term] id: XAO:0004187 name: anterior branchial crest (Xenopus) namespace: xenopus_anatomy def: "The most anterior of the migrating cranial neural crest streams, running along the posterior edge of the eye primordium, below the eye and to the border of the cement gland." [PMID:21490068] is_a: XAO:0000026 ! branchial crest (Xenopus) [Term] id: XAO:0004188 name: posterior branchial crest (Xenopus) namespace: xenopus_anatomy def: "The second most anterior of the migrating cranial neural crests streams." [PMID:21490068] is_a: XAO:0000026 ! branchial crest (Xenopus) [Term] id: XAO:0004193 name: ossicle (Xenopus) namespace: xenopus_anatomy def: "Skeletal element that is often isolated, small, and is usually ossified." [VAO:0000132] xref: VAO:0000132 is_a: UBERON:0004765 ! skeletal element [Term] id: XAO:0004194 name: appendicular ossicle (Xenopus) namespace: xenopus_anatomy xref: VAO:0000131 is_a: XAO:0004193 ! ossicle (Xenopus) [Term] id: XAO:0004195 name: cellular bone tissue (Xenopus) namespace: xenopus_anatomy def: "Mineralized bone tissue that always includes non-terminally differentiated osteoblasts and osteocytes." [VAO:0000118] xref: VAO:0000118 is_a: XAO:0004040 ! mineralized bone tissue (Xenopus) [Term] id: XAO:0004199 name: enameloid (Xenopus) namespace: xenopus_anatomy def: "Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue." [VAO:0000113] synonym: "bitypic enamel" EXACT [] synonym: "durodentine" RELATED [] synonym: "enameloid tissue" EXACT [] synonym: "vitrodentine" EXACT [] xref: VAO:0000113 is_a: XAO:0004046 ! odontoid tissue (Xenopus) relationship: develops_from XAO:0004203 ! pre-enameloid (Xenopus) [Term] id: XAO:0004200 name: non-mineralized chondroid tissue (Xenopus) namespace: xenopus_anatomy xref: VAO:0000077 is_a: UBERON:0004755 ! skeletal tissue [Term] id: XAO:0004201 name: odontode tissue (Xenopus) namespace: xenopus_anatomy def: "Skeletal tissue that is avascular tubular mineralized matrix, primarily made of dentine that is deposited by odontoblasts that are excluded from the matrix; develops from pre-dentine tissue." [VAO:0000123] synonym: "dental tissue" RELATED [] xref: VAO:0000123 is_a: XAO:0004046 ! odontoid tissue (Xenopus) relationship: develops_from XAO:0004052 ! pre-dentine (Xenopus) [Term] id: XAO:0004202 name: pre-enamel (Xenopus) namespace: xenopus_anatomy def: "Odontogenic tissue that is avascular non-mineralized matrix that is deposited by preameloblast and ameloblasts that are excluded from the matrix." [VAO:0000066] synonym: "pre-enamel tissue" EXACT [] synonym: "preenamel tissue" EXACT [] xref: VAO:0000066 is_a: XAO:0004046 ! odontoid tissue (Xenopus) [Term] id: XAO:0004203 name: pre-enameloid (Xenopus) namespace: xenopus_anatomy def: "Odontoid tissue that is avascular non-mineralized matrix that is deposited by odontoblasts and ameloblasts that are excluded from the matrix." [VAO:0000114] synonym: "non-mineralized enameloid tissue" EXACT [] xref: VAO:0000114 is_a: XAO:0004046 ! odontoid tissue (Xenopus) [Term] id: XAO:0004204 name: sesamoid (Xenopus) namespace: xenopus_anatomy def: "Replacement element; an ossicle; often an endochondral replacement element that has cartilage and bone states that develops in dense regular connective tissue (e.g., tendons and ligaments)." [VAO:0000137] xref: VAO:0000137 is_a: XAO:0004193 ! ossicle (Xenopus) [Term] id: XAO:0004206 name: anterior placodal area (Xenopus) namespace: xenopus_anatomy def: "One of the 2 subregions of the pre-placodal ectoderm, which lies abutting and anterior to the neural plate." [ISBN:0878933840] is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0004092 ! preplacodal ectoderm (Xenopus) [Term] id: XAO:0004207 name: posterior placodal area (Xenopus) namespace: xenopus_anatomy def: "One of the 2 subregions of the pre-placodal ectoderm, which lies abutting and lateral to the neural crest." [ISBN:0878933840] is_a: UBERON:0000479 ! tissue relationship: part_of XAO:0004092 ! preplacodal ectoderm (Xenopus) [Term] id: XAO:0004209 name: anterior neural ridge (Xenopus) namespace: xenopus_anatomy def: "The region that delineates the rostral boundary of the neural plate in the neural stage embryo, and is devoid of neural crest cells. It gives rise to olfactory placodes, some elements of the forebrain, and the anterior lobe of the pituitary gland." [ISBN:0878933840] is_a: UBERON:0000479 ! tissue [Term] id: XAO:0004216 name: glomeral nexus (Xenopus) namespace: xenopus_anatomy def: "The narrow bridge that links the two glomera of the pronephric kidney." [XB:curator] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002120 ! pronephros [Term] id: XAO:1000002 name: early tailbud (Xenopus) namespace: xenopus_developmental_stage def: "The stages from Nieuwkoop and Faber stage 22 to stage 28." [ISBN:0815318960] is_a: UBERON:0009741 ! tailbud stage [Term] id: XAO:1000015 name: NF stage 5 (16-cell) (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 5; age 2 hr 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Advanced sixteen cell stage. Dorsal micromeres distinctly smaller and less pigmented than ventral ones. Macromeres entirely separated by cleavage grooves. Length: 1.4 - 1.5 mm." [ISBN:0815318960] synonym: "16-cell stage" EXACT [] xref: ZFS:0000005 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: XAO:1000016 name: NF stage 6 (32-cell) (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 6; age 3 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Advanced thirty-two cell stage. Distinction between dorsal and ventral micromeres as in preceding stage. Length: 1.4 - 1.5 mm." [ISBN:0815318960] synonym: "32-cell stage" EXACT [] xref: ZFS:0000006 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: XAO:1000017 name: NF stage 7 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 7, 64-cell embryo; age 4 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Large-cell blastula stage. In animal view about 10 micromeres along meridian. Length: 1.4 - 1.5 mm." [ISBN:0815318960] synonym: "64-cell stage" EXACT [] xref: ZFS:0000007 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000108 ! blastula stage [Term] id: XAO:1000018 name: NF stage 8 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 8, 128-cell embryo; age 5 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Medium-cell blastula stage. Surface not yet entirely smooth. Border of animal pigment cap more diffuse at dorsal than at lateral and ventral sides. Gradual transition in cell size from animal to vegetative pole. Length: 1.4 - 1.5 mm." [ISBN:0815318960] synonym: "128-cell stage" EXACT [] xref: ZFS:0000008 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000108 ! blastula stage [Term] id: XAO:1000019 name: NF stage 9 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 9; age 7 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Fine-cell blastula stage. Animal cells smaller at dorsal than at ventral side. Border between marginal zone and vegetative field distinct, particularly dorsally, owing to difference in cell size. Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000108 ! blastula stage [Term] id: XAO:1000020 name: NF stage 10 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 10; age 9 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Initial gastrula stage. First indication of blastopore only by pigment concentration. No formation of groove. Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000109 ! gastrula stage [Term] id: XAO:1000021 name: NF stage 11 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 11; age 11 hr 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Horse-shoe-shaped blastopore stage. Blastopore groove surrounding about half of future yolk plug and indicated at its ventral side; future yolk plug often rounded rectangular, slightly elongated in dorso-ventral direction, diameter more than two-fifths of diameter of egg (plus or minus 50 degrees of circumference). Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000109 ! gastrula stage [Term] id: XAO:1000022 name: NF stage 12 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 12; age 13 hr 15 min at 22-24 Celsius; corresponding to the following external morphological criteria: Medium yolk plug stage. Yolk plug circular; diameter somewhat less than one fourth of diameter of egg (plus or minus 25 degrees). More and less pigmented fields radiating from yolk plug. Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000109 ! gastrula stage [Term] id: XAO:1000023 name: NF stage 13 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 13; age 14 hr 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Slit-blastopore stage. Neural plate faintly delimited; slight elevation of its rostral part and slight flattening of its caudal part. Caudal part of median groove formed. Length: 1.5 - 1.6 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000024 name: NF stage 14 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 14; age 16 hr 15 min at 22-24 Celsius; corresponding to the following external morphological criteria: Neural plate stage. Cerebral part of neural plate bent downwards, with median elevation at rostral end of median groove. Initial elevation of neural folds, most pronounced in future nucal region. Blastopore always slit-shaped. Length: 1.5 - 1.6 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000025 name: NF stage 15 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 15; age 17 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Early neural fold stage. Presumptive cement gland faintly circumscribed. Anterior part of neural plate roundish. Neural folds distinct, except medio-rostrally; initial formation of sharp inner ridges on neural folds in rhombencephalic region. Length: 1.5 - 1.6 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000026 name: NF stage 16 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 16; age 18 hr 15 min at 22-24 Celsius; corresponding to the following external morphological criteria: Mid neural fold stage. Anterior part of neural plate rectangular; darkly pigmented eye anlagen present; neural plate sharply constricted in the middle. Inner ridges on neural folds forming angle of about 90 degrees with neural plate in rhombencephalic region. Length: 1.5 - 1.6 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000027 name: NF stage 17 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 17; age 18 hr 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Late neural fold stage. Anterior part of neural plate oblong triangular, angles formed by eye anlagen. Neural folds approaching each other from blastopore up to anterior trunk region. Length: 1.5 - 1.6 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000028 name: NF stage 2- (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 2-; age 1 hr 15 min at 22-24 Celsius; corresponding to the following external morphological criteria: Beginning of first cleavage. First cleavage groove has not yet reached vegetal pole. Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: XAO:1000030 name: NF stage 10.25 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 10.25; age 10 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Early gastrula stage. First formation of dorsal blastopore groove; the groove is still straight. Length: 1.4 - 1.5 mm." [ISBN:0815318960] synonym: "NF stage 10+" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000109 ! gastrula stage [Term] id: XAO:1000031 name: NF stage 10.5 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 10.5; age 11 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Crescent-shaped blastopore stage. Blastopore groove angular. Vegetal field slightly decreased in size, ventral border of future yolk plug indicated by pigment contraction. Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000109 ! gastrula stage [Term] id: XAO:1000032 name: NF stage 11.5 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 11.5; age 12 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Large yolk plug stage. Blastopore groove closed ventrally; yolk plug not yet quite circular. At ventral side concentrated superficial pigment still visible. Diameter of yolk plug about a third of diameter of egg (plus or minus 40 degrees). Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000109 ! gastrula stage [Term] id: XAO:1000033 name: NF stage 12.5 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 12.5; age 14 hr 15 min at 22-24 Celsius; corresponding to the following external morphological criteria: Small yolk plug stage. Future position of neural plate and median groove indicated by darker pigment lines. Yolk plug usually ovoid, variable in size. Length: 1.4 - 1.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000109 ! gastrula stage [Term] id: XAO:1000034 name: NF stage 18 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 18; age 19 hr 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Neural groove stage. Anterior part of neural plate narrow, more or less club-shaped, often narrower towards rostral end. Parallel neural folds in trunk region very close to each other, not yet touching. Length: 1.5 - 1.6 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000035 name: NF stage 19 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 19; age 20 hr 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Initial neural tube stage. Neural folds touching each other, except for inconstant openings at anterior and posterior end and behind nucal region. Considerable lateral extension of brain. Lateral outline of embryo still convex. Length: 1.5 - 1.6 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000036 name: NF stage 20 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 20; age 21 hr 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Neural folds fused, suture still present. The two eye anlagen showing through dumb-bell-shaped, eyes hardly protruding. Beginning of stretching of embryos. Lateral outline flat. Length: 1.7 - 1.8 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000037 name: NF stage 21 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 21; age 22 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Suture of neural tube completely closed. Delimitation of frontal field by pigment lines. Primary eye vesicles showing through in the form of two separate, obliquely placed oval spots; beginning of protrusion of eyes. Lateral outline of embryo just becoming concave, ventral outline flat. Length: 1.9 - 2.0 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000110 ! neurula stage [Term] id: XAO:1000038 name: NF stage 22 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 22; age 24 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Distinct protrusion of eyes. Initial groove between jaw- and gill-areas only at latero-dorsal side. Lateral and ventral outlines of embryo slightly concave. Anal opening displaced to ventral side. Vitelline membrane becoming wider. Length: 2.0 - 2.2 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000002 ! early tailbud (Xenopus) [Term] id: XAO:1000039 name: NF stage 23 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 23; age 1 day, 45 min at 22-24 Celsius; corresponding to the following external morphological criteria: Jaw- and gill-areas completely separated by groove. Ventral outline of embryo more concave. Length: 2.2 - 2.4 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000002 ! early tailbud (Xenopus) [Term] id: XAO:1000040 name: NF stage 24 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 24; age 1 day, 2 hr 15 min at 22-24 Celsius; corresponding to the following external morphological criteria: Eyes protruding less far laterally than gill-area. Gill-area more prominent than jaw-area, gill-area not yet grooved. Ventral outline of embryo nicked. Tail bud discernible. Initial motor reactions to external stimulation. Length: 2.5 - 2.7 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000002 ! early tailbud (Xenopus) [Term] id: XAO:1000041 name: NF stage 25 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 25; age 1 day, 3 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Eyes protruding equally far or further laterally than gill-area. Gill-area grooved. Invagination of otic vesicle indicated by pigment spot. Beginning of fin formation. Length: 2.8 - 3.0 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000002 ! early tailbud (Xenopus) [Term] id: XAO:1000042 name: NF stage 26 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 26; age 1 day, 5 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: otic vesicle protruding. Pronephros distinctly visible. Myotomes showing through for the first time. Fin somewhat broadened at dorso-caudal end of body. Beginning of spontaneous movements. Length: 3.0 - 3.3 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000002 ! early tailbud (Xenopus) [Term] id: XAO:1000043 name: NF stage 27 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 27; age 1 day, 7 hr 15 min at 22-24 Celsius; corresponding to the following external morphological criteria: Lateral flattening of eyes. Fin transluscent, except for region behind anus. Tail bud formation accentuated in lateral outline. Length: 3.4 - 3.7 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000002 ! early tailbud (Xenopus) [Term] id: XAO:1000044 name: NF stage 28 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 28; age 1 day, 8 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Fin extending up to anus. Fin broadened and distinctly divided into outer transparent and inner translucent band. Length: 3.8 - 4.0 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000002 ! early tailbud (Xenopus) [Term] id: XAO:1000045 name: NF stage 29 and 30 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 29 and 30; age 1 day, 11 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Gray eye cup showing through for the first time. Fin transparent up to the base over its whole length. Tail bud distinct. Length: 4.0 - 4.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000046 name: NF stage 31 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 31; age 1 day, 13 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Tail bud equally long as broad. Length: 4.2 - 4.8 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000047 name: NF stage 32 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 32; age 1 day, 16 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Eye cup horse-shoe-shaped, standing out distinctly. Length of tail bud about 1.5 times its breadth. Length: 4.5 - 5.1 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000048 name: NF stage 33 and 34 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 33 and 34; age 1 day, 20 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Stomodeal invagination a shallow vertical groove. Dorsal part of eye more pigmented than ventral part; distinct melanophores in dorsal part. Melanophores appearing dorsally on the head and laterally in a row extending from just below the pronephros backwards. Length of tail bud about twice its breadth. Beginning of heart beat. Length: 4.7 - 5.3 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000049 name: NF stage 35 and 36 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 35 and 36; age 2 days, 2 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Stomodeal invagination roundish. Eye entirely black, choroid fissure nearly closed. Formation of two gill rudiments, anterior one nipple-shaped. Melanophores appearing on back. Posterior outline of proctodeum still curved. Length of tail bud about three times its breadth. Beginning of hatching. Length: 5.3 - 6.0 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000050 name: NF stage 37 and 38 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 37 and 38; age 2 days, 5 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Stomodeal invagination much deeper, opening round. Both gill rudiments nipple-shaped, a branch of the anterior one indicated. Posterior outline of proctodeum straight, forming very obtuse angle with ventral border of tail myotomes. Melanophores spreading over tail. Length: 5.6 - 6.2 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000051 name: NF stage 39 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 39; age 2 days, 8 hr 30 min at 22-24 Celsius; corresponding to the following external morphological criteria: Melanophores appearing around nasal pits. Opening of stomodeal invagination transversely elongated. Melanophores on back arranged in a superficial and a deeper layer. Outlines of proctodeum and tail myotomes forming angle of about 135 degrees. Melanophores appearing along ventral edge of tail musculature. Length: 5.9 - 6.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000052 name: NF stage 40 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 40; age 2 days, 18 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Mouth broken through. Length of gills about twice their breadth, posterior one sometimes also showing a branch. Outlines of proctodeum and tail myotomes forming angles of 90 degrees. Beginning of blood circulation in gills. Length: 6.3 - 6.8 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000053 name: NF stage 41 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 41; age 3 days, 4 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Gills broader and flatter, more laterally directed. Formation of a left-rostral and a right-caudal furrow in yolk mass; torsion of interjacent part about 45 degrees; formation of conical proctodeum, forming angle of about 60 degrees with tail myotomes. Formation of fin rostral to proctodeum; ventral outline of yolk mass and proctodeum a smooth concave line. Length: 6.7 - 7.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000054 name: NF stage 42 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 42; age 3 days, 8 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Beginning of formation of opercular folds. Torsion of intestine about 90 degrees; proctodeum connected with yolk mass by short horizontal intestinal tube. Length: 7.0 - 7.7 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000055 name: NF stage 43 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 43; age 3 days, 15 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Lateral line system becoming visible externally. Cement gland losing its pigment. Torsion of intestine about 180 degrees; proctodeum narrower, arched or S-shaped. Length: 7.5 - 8.3 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000056 name: NF stage 44 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 44; age 3 days, 20 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Appearance of tentacle rudiments. Opercular folds protruding further. Coiling part of intestine showing S-shaped loop; torsion about 360 degrees. Blood-circulation in gills usually ceased (gills smaller). Length: 7.8 - 8.5 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000080 ! late tailbud (Xenopus) [Term] id: XAO:1000057 name: NF stage 45 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 45; age 4 days, 2 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Operculum partly covering gills, edge still straight. Intestine spiralized in ventral aspects, showing 1.5 revolutions. Beginning of feeding. Length: 8 - 10 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000058 name: NF stage 46 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 46; age 4 days, 10 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Edge of operculum becoming convex. Xantophores appearing on eye and abdomen. Intestine showing 2 to 2.5 revolutions. Hindlimb bud visible for the first time. Length: 9 - 12 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000059 name: NF stage 47 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 47; age 5 days, 12 hr at 22-24 Celsius; corresponding to the following external morphological criteria: Tentacles larger. Edge of operculum forming quarter of a circle. Xantophores forming opaque layer on abdomen. Intestine showing 2.5 to 3.5 revolutions. Hindlimb bud more distinct. Length: 12 - 15 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000060 name: NF stage 48 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 48; age 7.5 days at 22-24 Celsius; corresponding to the following external morphological criteria: Beginning of pigmentation around n. acusticus. Forelimb bud visible for the first time. Shining gold-coloured abdomen. Hindlimb bud semicircular in lateral aspect. Length: 14 - 17 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000061 name: NF stage 49 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 49; age about 12 days at 22-24 Celsius; corresponding to the following external morphological criteria: Melanophores usually appearing around thymus gland and nerves and blood vessels of head; xantophores appearing on pericard. Forelimb bud distinct. Hindlimb bud somewhat longer, distal outline still circular, no constrictions at base. Melanophores appearing on dorsal and ventral fin. Length: 17 - 23 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000062 name: NF stage 50 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 50; age about 15 days at 22-24 Celsius; corresponding to the following external morphological criteria: Forelimb bud somewhat oval-shaped in dorsal aspect. Hindlimb bud longer than broad, constricted at base, distal outline somewhat conical. Length: 20 - 27 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000063 name: NF stage 51 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 51; age about 17 days at 22-24 Celsius; corresponding to the following external morphological criteria: Tentacles much longer. Forelimb bud oval-shaped in lateral aspect. Hindlimb bud conical in shape, its length about 1.5 times its breadth; melanophores appearing on it. Length: 28 - 36 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000064 name: NF stage 52 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 52; age about 21 days at 22-24 Celsius; corresponding to the following external morphological criteria: Forelimb bud irregularly conical. Hindlimb bud showing first indication of ankle constriction and first sign of flattening of foot. Length: 42 - 56 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000065 name: NF stage 53 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 53; age about 24 days at 22-24 Celsius; corresponding to the following external morphological criteria: Fore- and hindlimbs in paddle stage. Hindlimb whithout foot somewhat longer than broad; 4th and 5th toe indicated. Length: 50 - 60 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000066 name: NF stage 54 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 54; age about 26 days at 22-24 Celsius; corresponding to the following external morphological criteria: All four fingers indicated; edge of hand slightly scalloped between fingers; melanophores appearing on forelimb. Length of hindlimb without foot nearly twice its breadth; all five toes indicated, the second only very slightly. Length: 58 - 65 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000089 ! premetamorphosis (Xenopus) [Term] id: XAO:1000067 name: NF stage 55 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 55; age about 32 days at 22-24 Celsius; corresponding to the following external morphological criteria: Hand pronated about 90 degrees; free parts of fingers about equally long as broad. Length of hindlimb without foot about 3 times its breadth; length of cartilages of 4th and 5th toe about 4 times their breadth. Length: 70 - 80 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000090 ! prometamorphosis (Xenopus) [Term] id: XAO:1000068 name: NF stage 56 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 56; age about 38 days at 22-24 Celsius; corresponding to the following external morphological criteria: Elbow and wrist clearly indicated; length of free parts of fingers 3 to 4 times their breadth. Length of cartilages of 4th and 5th toe about 6 times their breadth. Length: 70 - 100 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000090 ! prometamorphosis (Xenopus) [Term] id: XAO:1000069 name: NF stage 57 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 57; age about 41 days at 22-24 Celsius; corresponding to the following external morphological criteria: Pigment-free spot appearing above \"Stirnorgan\". Angle of elbow more than 90 degrees; fingers stretched out in forelimb atrium, their length about 7 times their breadth. Length: 75 - 105 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000090 ! prometamorphosis (Xenopus) [Term] id: XAO:1000070 name: NF stage 58 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 58; age about 44 days at 22-24 Celsius; corresponding to the following external morphological criteria: Forelimbs broken through. Guanophores appearing on abdomen and thighs (adult skin areas). All three claws present on hindlimbs. Length: 80 - 110 mm." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000071 name: NF stage 59 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 59; age about 45 days at 22-24 Celsius; corresponding to the following external morphological criteria: Tentacles beginning to shrivel up. Stretched forelimb reaching down to base of hindlimb. Guanophores appearing near base of forelimb (adult skin area); anterior border of adult skin area on abdomen not yet sharp; appearance of irregular dark spots on back." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000072 name: NF stage 60 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 60; age about 46 days at 22-24 Celsius; corresponding to the following external morphological criteria: N. olfactorius still longer than bulbus olfactorius. Guanophores appearing on lower jaw (adult skin area). Openings of gill chambers still wide. Distal half of fingers of stretched forelimb extending beyond base of hindlimb; forelimb still situated behind level of heart. Adult skin area of base of forelimb covered with guanophores; anterior border of adult skin area on abdomen sharper, reaching up to heart." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000073 name: NF stage 61 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 61; age about 48 days at 22-24 Celsius; corresponding to the following external morphological criteria: Head narrower. Tentacles considerably shortened, mostly curved backwards. Length of n. olfactorius equal to diameter of bulbus olfactorius. 4th arterial arch seen just in front of adult skin area of forelimb. Openings of gill chambers considerably narrowed. Forelimb at level of posterior half of heart. Adult skin area on abdomen covering posterior half of heart. Fins considerably reduced." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000074 name: NF stage 62 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 62; age about 49 days at 22-24 Celsius; corresponding to the following external morphological criteria: Head still somewhat broader than cranial part of trunk. Tentacles short, straight. N. olfactorius shorter than diameter of bulbus olfactorius. Corner of mouth still in front of eye. Thymus gland somewhat protruding. 3rd arterial arch (\"larval aorta\") seen at distance of its own diameter in front of adult skin area of forelimb. Opening of operculum reduced to curved slit. Forelimb at level of middle of heart. Anterior border of adult skin area on abdomen entirely sharp, mostly nicked medially. Ventral fin disappeared from abdomen." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000075 name: NF stage 63 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 63; age about 51 days at 22-24 Celsius; corresponding to the following external morphological criteria: Head narrower than trunk. Tentacles mostly disappeared. Corner of mouth at level of caudal border of eye. \"Larval aorta\" and thymus gland no longer externally visible. Operculum closed. Adult skin areas on abdomen and lower jaw separated by narrow band of larval skin. Forelimb at level of anterior half of heart. Fin mostly perforated near anus. Tail still slightly longer than body." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000076 name: NF stage 64 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 64; age about 53 days at 22-24 Celsius; corresponding to the following external morphological criteria: Corner of mouth well behind eye. Various adult skin areas joined almost everywhere, borderlines still clearly visible. Length of tail (from anus) is a third of body length." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000077 name: NF stage 65 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 65; age about 54 days at 22-24 Celsius; corresponding to the following external morphological criteria: Borderlines between adult skin areas partly disappeared. Tail oblong triangular in dorsal aspect, length abouth one tenth of body length." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000078 name: NF stage 66 (Xenopus) namespace: xenopus_developmental_stage def: "Nieuwkoop and Faber stage 66; age about 58 days at 22-24 Celsius; corresponding to the following external morphological criteria: Border lines between adult skin areas disappeared. Tail only a very small triangle, no longer visible from ventral side." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000091 ! climax (Xenopus) [Term] id: XAO:1000079 name: metamorphosing tadpole (Xenopus) namespace: xenopus_developmental_stage def: "The stages from Nieuwkoop and Faber stage 54 to stage 66." [ISBN:0815318960] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0004728 ! amphibian larval stage [Term] id: XAO:1000080 name: late tailbud (Xenopus) namespace: xenopus_developmental_stage def: "The stages from Nieuwkoop and Faber stage 29/30 to stage 44." [ISBN:0815318960] is_a: UBERON:0009741 ! tailbud stage [Term] id: XAO:1000081 name: unspecified stage (Xenopus) namespace: xenopus_developmental_stage comment: If an anatomical term has a starts_during or ends_during relationship to this stage term, this information is either unknown or has not yet been curated. is_a: UBERON:0000105 ! life cycle stage [Term] id: XAO:1000082 name: unfertilized egg (Xenopus) namespace: xenopus_developmental_stage is_a: UBERON:0000105 ! life cycle stage [Term] id: XAO:1000083 name: oocyte stage I (Xenopus) namespace: xenopus_developmental_stage is_a: XAO:1000082 ! unfertilized egg (Xenopus) [Term] id: XAO:1000084 name: oocyte stage II (Xenopus) namespace: xenopus_developmental_stage is_a: XAO:1000082 ! unfertilized egg (Xenopus) [Term] id: XAO:1000085 name: oocyte stage III (Xenopus) namespace: xenopus_developmental_stage is_a: XAO:1000082 ! unfertilized egg (Xenopus) [Term] id: XAO:1000086 name: oocyte stage IV (Xenopus) namespace: xenopus_developmental_stage is_a: XAO:1000082 ! unfertilized egg (Xenopus) [Term] id: XAO:1000087 name: oocyte stage V (Xenopus) namespace: xenopus_developmental_stage is_a: XAO:1000082 ! unfertilized egg (Xenopus) [Term] id: XAO:1000088 name: oocyte stage VI (Xenopus) namespace: xenopus_developmental_stage is_a: XAO:1000082 ! unfertilized egg (Xenopus) [Term] id: XAO:1000089 name: premetamorphosis (Xenopus) namespace: xenopus_developmental_stage def: "The period during which limb bud growth occurs, covering Nieuwkoop and Faber stage 45 to stage 54." [ISBN:0124554032] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0004728 ! amphibian larval stage [Term] id: XAO:1000090 name: prometamorphosis (Xenopus) namespace: xenopus_developmental_stage def: "The period during which toe differentiation and rapid hind limb growth continue, covering Nieuwkoop and Faber stage 55 to stage 57." [ISBN:0124554032] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000079 ! metamorphosing tadpole (Xenopus) [Term] id: XAO:1000091 name: climax (Xenopus) namespace: xenopus_developmental_stage def: "The period during which tail resorption occurs, covering Nieuwkoop and Faber stage 58 to stage 66." [ISBN:0124554032] is_a: UBERON:0000105 ! life cycle stage relationship: part_of XAO:1000079 ! metamorphosing tadpole (Xenopus) [Term] id: XAO:1000092 name: mature egg (Xenopus) namespace: xenopus_developmental_stage is_a: XAO:1000082 ! unfertilized egg (Xenopus) [Term] id: XAO:1000093 name: adult frog (Xenopus) namespace: xenopus_developmental_stage def: "The stage of being a fully formed animal, following Nieuwkoop and Faber stage 66." [ISBN:0815318960] is_a: UBERON:0000113 ! post-juvenile adult stage [Term] id: ZFA:0000000 name: Brachet's cleft (zebrafish) namespace: zebrafish_anatomy def: "The visible division between epiblast and hypoblast in the gastrula." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000000 xref: ZFIN:ZDB-ANAT-010921-404 is_a: UBERON:0002050 ! embryonic structure [Term] id: ZFA:0000001 name: Kupffer's vesicle (zebrafish) namespace: zebrafish_anatomy def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kupffer's vesicle has been compared to the mouse embryonic node." [ZFIN:ZDB-PUB-050328-4, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000001 xref: ZFIN:ZDB-ANAT-010921-406 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from ZFA:0000023 ! forerunner cell group (zebrafish) relationship: part_of UBERON:0002533 ! tail bud [Term] id: ZFA:0000003 name: adaxial cell (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "adaxial cells" EXACT PLURAL [] xref: TAO:0000003 xref: ZFIN:ZDB-ANAT-010921-408 is_a: CL:0000000 ! cell relationship: part_of UBERON:0003059 ! presomitic mesoderm [Term] id: ZFA:0000004 name: anterior axial hypoblast (zebrafish) namespace: zebrafish_anatomy def: "Anterior portion of the axial hypoblast." [ZFIN:Curator] synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] xref: TAO:0000004 xref: ZFIN:ZDB-ANAT-010921-409 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0001378 ! axial hypoblast (zebrafish) [Term] id: ZFA:0000006 name: ball (zebrafish) namespace: zebrafish_anatomy def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period." [ZFIN:ZDB-PUB-961014-576] synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000006 xref: ZFIN:ZDB-ANAT-010921-413 is_a: UBERON:0000475 ! organism subdivision relationship: part_of CL:0000428 ! yolk cell [Term] id: ZFA:0000015 name: anatomical set namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-061101-1 [Term] id: ZFA:0000023 name: forerunner cell group (zebrafish) namespace: zebrafish_anatomy def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle." [ZFIN:ZDB-PUB-970107-2] synonym: "DFCs" EXACT PLURAL [] synonym: "dorsal forerunner cells" EXACT PLURAL [] synonym: "forerunner cells" EXACT PLURAL [] xref: TAO:0000023 xref: ZFIN:ZDB-ANAT-010921-434 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from ZFA:0001126 ! noninvoluting endocytic marginal cell cluster (zebrafish) [Term] id: ZFA:0000033 name: intermediate cell mass of mesoderm (zebrafish) namespace: zebrafish_anatomy synonym: "ICM" EXACT [] synonym: "intermediate cell mass of Oellacher" EXACT [] synonym: "posterior intermediate cell mass" EXACT [] xref: TAO:0000033 xref: ZFIN:ZDB-ANAT-010921-444 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0003081 ! lateral plate mesoderm relationship: develops_from ZFA:0001201 ! ventral lateral mesoderm (zebrafish) relationship: part_of UBERON:0002390 ! hematopoietic system [Term] id: ZFA:0000039 name: median axial vein (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000039 xref: ZFIN:ZDB-ANAT-010921-452 is_a: UBERON:0001638 ! vein [Term] id: ZFA:0000040 name: median fin fold (zebrafish) namespace: zebrafish_anatomy def: "Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent." [ZFIN:curator] synonym: "median fin" EXACT [] xref: TAO:0000040 xref: ZFIN:ZDB-ANAT-010921-453 is_a: UBERON:0003102 ! surface structure [Term] id: ZFA:0000043 name: muscle pioneer somite 1 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 1" EXACT PLURAL [] xref: TAO:0000043 xref: ZFIN:ZDB-ANAT-010921-456 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000963 ! slow muscle cell somite 1 (zebrafish) [Term] id: ZFA:0000044 name: myotome somite 14 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000044 xref: ZFIN:ZDB-ANAT-010921-457 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000726 ! somite 14 (zebrafish) [Term] id: ZFA:0000052 name: dorsal actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Actinotrichium which is part of the dorsal fin fold." [ZFIN:curator] synonym: "dorsal actinotrichia" EXACT PLURAL [] xref: TAO:0000052 xref: ZFIN:ZDB-ANAT-060131-1 is_a: ZFA:0000089 ! fin fold actinotrichium (zebrafish) relationship: part_of ZFA:0000102 ! dorsal fin fold (zebrafish) [Term] id: ZFA:0000058 name: polster (zebrafish) namespace: zebrafish_anatomy def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period." [ZFIN:ZDB-PUB-961014-576] synonym: "pillow" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000058 xref: ZFIN:ZDB-ANAT-010921-475 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from ZFA:0000004 ! anterior axial hypoblast (zebrafish) relationship: part_of UBERON:0003063 ! prechordal plate [Term] id: ZFA:0000068 name: proneural cluster (zebrafish) namespace: zebrafish_anatomy def: "Cluster of cells in the neural plate that have the potential to become neuroblast." [ZFIN:ZDB-PUB-990921-1] synonym: "proneural clusters" EXACT PLURAL [] xref: TAO:0000068 xref: ZFIN:ZDB-ANAT-010921-486 is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0003075 ! neural plate [Term] id: ZFA:0000070 name: sensory axons peripheral namespace: zebrafish_anatomy is_obsolete: true comment: Consider post-composing term ZFA:0009053 sensory neuron with GO:0030424 axon xref: TAO:0000070 xref: ZFIN:ZDB-ANAT-010921-488 [Term] id: ZFA:0000072 name: somite 1 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000072 xref: ZFIN:ZDB-ANAT-010921-490 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000073 name: somite 5 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000073 xref: ZFIN:ZDB-ANAT-010921-492 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000074 name: somite 26 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000074 xref: ZFIN:ZDB-ANAT-010921-493 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000078 name: ventral actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Actinotrichium which is part of the ventral fin fold." [ZFIN:curator] synonym: "ventral actinotrichia" EXACT PLURAL [] xref: TAO:0000078 xref: ZFIN:ZDB-ANAT-060131-2 is_a: ZFA:0000089 ! fin fold actinotrichium (zebrafish) relationship: part_of ZFA:0001069 ! ventral fin fold (zebrafish) [Term] id: ZFA:0000083 name: ventral mesoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000083 xref: ZFIN:ZDB-ANAT-010921-502 is_a: UBERON:0000926 ! mesoderm [Term] id: ZFA:0000088 name: YSL (zebrafish) namespace: zebrafish_anatomy def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm." [ZFIN:ZDB-PUB-961014-576] synonym: "periblast" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "yolk syncytial layer" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000088 xref: ZFIN:ZDB-ANAT-010921-508 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from CL:0000428 ! yolk cell relationship: develops_from ZFA:0000541 ! marginal blastomere (zebrafish) [Term] id: ZFA:0000089 name: fin fold actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine." [http:www.briancoad.com/Dictionary/A.htm] synonym: "fin fold actinotrichia" EXACT PLURAL [] xref: TAO:0000089 xref: ZFIN:ZDB-ANAT-060131-3 is_a: ZFA:0005435 ! actinotrichium (zebrafish) relationship: part_of ZFA:0000040 ! median fin fold (zebrafish) [Term] id: ZFA:0000090 name: apical ectodermal ridge dorsal fin (zebrafish) namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the dorsal fin." [ZFIN:curator] xref: TAO:0000090 xref: ZFIN:ZDB-ANAT-010921-511 is_a: UBERON:0004356 ! apical ectodermal ridge relationship: part_of UBERON:0003097 ! dorsal fin [Term] id: ZFA:0000092 name: axis (zebrafish) namespace: zebrafish_anatomy synonym: "midline" EXACT [] xref: TAO:0000092 xref: ZFIN:ZDB-ANAT-010921-513 is_a: UBERON:0000475 ! organism subdivision [Term] id: ZFA:0000093 name: blastomere (zebrafish) namespace: zebrafish_anatomy def: "Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim synonym: "blastomeres" EXACT PLURAL [] xref: TAO:0000093 xref: ZFIN:ZDB-ANAT-010921-514 is_a: CL:0000000 ! cell relationship: part_of UBERON:0004749 ! blastodisc [Term] id: ZFA:0000096 name: cardinal system (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000096 xref: ZFIN:ZDB-ANAT-010921-517 is_a: UBERON:0004537 ! blood vasculature [Term] id: ZFA:0000098 name: proliferative region (zebrafish) namespace: zebrafish_anatomy def: "Anatomical cluster which consists of rapidly dividing cells." [ZFIN:curator] synonym: "cell cycle" RELATED [] synonym: "cell division" RELATED [] synonym: "proliferation" RELATED [] xref: TAO:0000098 xref: ZFIN:ZDB-ANAT-010921-520 is_a: UBERON:0000477 ! anatomical cluster [Term] id: ZFA:0000102 name: dorsal fin fold (zebrafish) namespace: zebrafish_anatomy def: "Region of the median fin fold that develops into the dorsal fin." [ZFIN:curator] xref: TAO:0000102 xref: ZFIN:ZDB-ANAT-010921-525 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000040 ! median fin fold (zebrafish) [Term] id: ZFA:0000103 name: embryo namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-010921-528 [Term] id: ZFA:0000104 name: lateral cells namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-010921-529 [Term] id: ZFA:0000106 name: extension (zebrafish) namespace: zebrafish_anatomy def: "The posterior elongated region of the yolk cell that forms during the segmentation period." [ZFIN:ZDB-PUB-961014-576] synonym: "yolk extension" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000106 xref: ZFIN:ZDB-ANAT-010921-531 is_a: UBERON:0000475 ! organism subdivision relationship: part_of CL:0000428 ! yolk cell [Term] id: ZFA:0000116 name: macula lagena (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena." [ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4] synonym: "maculae lagena" EXACT PLURAL [] xref: TAO:0000116 xref: ZFIN:ZDB-ANAT-010921-541 is_a: UBERON:0000054 ! macula relationship: develops_from ZFA:0000558 ! posterior macula (zebrafish) relationship: part_of UBERON:0001844 ! cochlea [Term] id: ZFA:0000120 name: lateral line ganglion (zebrafish) namespace: zebrafish_anatomy def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFIN:curator] synonym: "lateral line ganglia" EXACT PLURAL [] synonym: "llg" EXACT [] xref: TAO:0000120 xref: ZFIN:ZDB-ANAT-010921-546 is_a: UBERON:0001714 ! cranial ganglion relationship: part_of UBERON:0002540 ! lateral line system [Term] id: ZFA:0000125 name: mandibular lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast mandibular" EXACT [] synonym: "neuromasts mandibular" EXACT PLURAL [] xref: TAO:0000125 xref: ZFIN:ZDB-ANAT-010921-551 is_a: UBERON:0008904 ! neuromast relationship: part_of ZFA:0000259 ! mandibular lateral line (zebrafish) [Term] id: ZFA:0000127 name: mesenchyme condensations namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-010921-554 [Term] id: ZFA:0000136 name: otic lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast otic" EXACT [] synonym: "neuromasts otic" EXACT PLURAL [] xref: TAO:0000136 xref: ZFIN:ZDB-ANAT-010921-565 is_a: UBERON:0008904 ! neuromast relationship: part_of ZFA:0000464 ! otic lateral line (zebrafish) [Term] id: ZFA:0000156 name: somite 20 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000156 xref: ZFIN:ZDB-ANAT-010921-593 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000157 name: somite 30 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000157 xref: ZFIN:ZDB-ANAT-010921-594 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000164 name: ventral mesenchyme (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000164 xref: ZFIN:ZDB-ANAT-010921-602 is_a: UBERON:0003104 ! mesenchyme [Term] id: ZFA:0000165 name: inferior lobe (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "inferior lobes" EXACT PLURAL [] synonym: "lateral lobe of hypothalamus" EXACT [] xref: TAO:0000165 xref: ZFIN:ZDB-ANAT-011113-1 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000347 ! dorsal hypothalamic zone (zebrafish) [Term] id: ZFA:0000167 name: anal fin skeleton (zebrafish) namespace: zebrafish_anatomy def: "Median fin skeleton that is located posterior to the anus." [TAO:curator] xref: TAO:0000167 xref: ZFIN:ZDB-ANAT-011113-100 is_a: UBERON:0002543 ! median fin skeleton relationship: part_of ZFA:0001162 ! anal fin (zebrafish) [Term] id: ZFA:0000168 name: anterior macula (zebrafish) namespace: zebrafish_anatomy def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator, http://zfin.org/zf_info/anatomy/dict/sens/sens.html] synonym: "am" EXACT [] synonym: "anterior sensory patch" EXACT [] xref: TAO:0000168 xref: ZFIN:ZDB-ANAT-011113-101 is_a: UBERON:0000054 ! macula relationship: part_of ZFA:0001671 ! macula communis (zebrafish) [Term] id: ZFA:0000169 name: antorbital namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-102 [Term] id: ZFA:0000171 name: basisphenoid namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-105 [Term] id: ZFA:0000174 name: cerebellovestibular tract (zebrafish) namespace: zebrafish_anatomy def: "Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex." [ZFIN:ZDB-PUB-090422-9] synonym: "caudal cerebellar tract" EXACT [] synonym: "caudal cerebellar tracts" EXACT PLURAL [] synonym: "cerebellovestibular tracts" EXACT PLURAL [] xref: TAO:0000174 xref: ZFIN:ZDB-ANAT-011113-108 is_a: UBERON:0002317 ! white matter of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: ZFA:0000175 name: posterior lateral line nerve (zebrafish) namespace: zebrafish_anatomy def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:ZDB-PUB-000523-3, ZFIN:ZDB-PUB-961014-763] synonym: "caudal lateral line nerve" EXACT [] xref: TAO:0000175 xref: ZFIN:ZDB-ANAT-011113-109 is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0008906 ! lateral line nerve relationship: part_of ZFA:0001471 ! posterior lateral line system (zebrafish) [Term] id: ZFA:0000176 name: lateral nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus lateralis" EXACT [] xref: TAO:0002204 xref: ZFIN:ZDB-ANAT-011113-11 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0000177 name: caudal oblique (zebrafish) namespace: zebrafish_anatomy synonym: "caudal obliques" EXACT PLURAL [] xref: TAO:0000177 xref: ZFIN:ZDB-ANAT-011113-110 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000178 name: caudal peduncle (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000178 xref: ZFIN:ZDB-ANAT-011113-111 is_a: UBERON:0003102 ! surface structure [Term] id: ZFA:0000181 name: caudal zone of dorsal telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which is the most caudally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area dorsalis telencephali, zona posterior" EXACT [] synonym: "caudal zone of D" EXACT [] synonym: "posterior zone of dorsal telencephalic area" EXACT [] xref: TAO:0000181 xref: ZFIN:ZDB-ANAT-011113-114 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of ZFA:0000505 ! dorsal telencephalon (zebrafish) [Term] id: ZFA:0000182 name: central caudal thalamic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, ventral to the dorsal caudal thalamic nucleus." [ZFIN:curator] synonym: "central posterior thalamic nucleus" EXACT [] synonym: "nucleus centralis posterior thalami" EXACT [] xref: TAO:0000182 xref: ZFIN:ZDB-ANAT-011113-115 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: ZFA:0000183 name: central pretectum (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is the central part of the pretectum." [ZFIN:curator] xref: TAO:0000183 xref: ZFIN:ZDB-ANAT-011113-116 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001944 ! pretectal region [Term] id: ZFA:0000185 name: commissura rostral, pars ventralis (zebrafish) namespace: zebrafish_anatomy def: "Anterior commissure which abuts the preoptic region dorsally. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "commissura anterior, pars ventralis" EXACT [] xref: TAO:0000185 xref: ZFIN:ZDB-ANAT-011113-118 is_a: UBERON:0000935 ! anterior commissure [Term] id: ZFA:0000188 name: corpus cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "cerebellar corpus" EXACT [] synonym: "corpus cerebellum" EXACT PLURAL [] xref: TAO:0000188 xref: ZFIN:ZDB-ANAT-011113-120 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: ZFA:0000193 name: diffuse nucleus inferior lobe (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "DIL" EXACT [] synonym: "diffuse nuclei" EXACT PLURAL [] xref: TAO:0000193 xref: ZFIN:ZDB-ANAT-011113-125 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000165 ! inferior lobe (zebrafish) [Term] id: ZFA:0000194 name: dorsal accessory optic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and is ventral to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "nucleus opticus accessorius dorsalis" EXACT [] xref: TAO:0000194 xref: ZFIN:ZDB-ANAT-011113-126 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000183 ! central pretectum (zebrafish) [Term] id: ZFA:0000195 name: dorsal depressor (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin muscle that moves the dorsal fin into a lowered position. Antagonistic to dorsal erector muscle." [ZFIN:curator] synonym: "dorsal depressors" EXACT PLURAL [] xref: TAO:0000195 xref: ZFIN:ZDB-ANAT-011113-127 is_a: ZFA:0005270 ! depressor muscle (zebrafish) relationship: part_of ZFA:0000648 ! dorsal fin musculature (zebrafish) [Term] id: ZFA:0000196 name: dorsal hypohyal bone (zebrafish) namespace: zebrafish_anatomy def: "The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm)." [ZFIN:curator] synonym: "dorsal hypohyals" EXACT PLURAL [] xref: TAO:0000196 xref: ZFIN:ZDB-ANAT-011113-128 is_a: UBERON:0004751 ! hypohyal bone [Term] id: ZFA:0000197 name: dorsal habenular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Habenular nucleus where the efferent projections innervate the interpeduncular nucleus. The dorsal habenula is structurally homologous to the mammalian medial habenula." [ZFIN:ZDB-PUB-100202-7] synonym: "dorsal habenular nuclei" EXACT PLURAL [] synonym: "dorsal nuclei" EXACT PLURAL [] xref: TAO:0000197 xref: ZFIN:ZDB-ANAT-011113-129 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001904 ! habenula [Term] id: ZFA:0000199 name: dorsal periventricular hypothalamus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the dorsal hypothalamic zone and is located periventricularly. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000199 xref: ZFIN:ZDB-ANAT-011113-130 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000347 ! dorsal hypothalamic zone (zebrafish) [Term] id: ZFA:0000201 name: dorsal transverse (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000201 xref: ZFIN:ZDB-ANAT-011113-132 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000202 name: efferent branchial artery (zebrafish) namespace: zebrafish_anatomy synonym: "EBA" EXACT [] xref: TAO:0000202 xref: ZFIN:ZDB-ANAT-011113-133 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0002535 ! gill relationship: part_of UBERON:0007303 ! pharyngeal vasculature [Term] id: ZFA:0000203 name: epicentrals namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-134 [Term] id: ZFA:0000205 name: external ventral flexor (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000205 xref: ZFIN:ZDB-ANAT-011113-136 is_a: UBERON:0000366 ! flexor muscle relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000209 name: lateral preglomerular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "lateral preglomerular nuclei" EXACT PLURAL [] xref: TAO:0000209 xref: ZFIN:ZDB-ANAT-011113-14 is_a: ZFA:0001662 ! preglomerular nucleus (zebrafish) [Term] id: ZFA:0000210 name: gigantocellular part of magnocellular preoptic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is the caudal gigantocellular portion of the magnocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "nucleus praeopticus magnocellularis, pars gigantocellularis" EXACT [] xref: TAO:0000210 xref: ZFIN:ZDB-ANAT-011113-140 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000248 ! magnocellular preoptic nucleus (zebrafish) [Term] id: ZFA:0000211 name: gill lamella (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion." [http:www.briancoad.com/Dictionary/G.htm] synonym: "gill lamellae" EXACT PLURAL [] xref: TAO:0000211 xref: ZFIN:ZDB-ANAT-011113-141 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002535 ! gill [Term] id: ZFA:0000212 name: granular eminence (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0000187 def: "Brain structure which is paired and part of the vestibulolateralis lobe of the cerebellum and extends fibers into the cerebellar crest. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "EG" RELATED [] synonym: "eminentia granularis" EXACT [] synonym: "lateral granular eminence" EXACT [] xref: TAO:0000212 xref: ZFIN:ZDB-ANAT-011113-142 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000307 ! vestibulolateralis lobe (zebrafish) [Term] id: ZFA:0000214 name: hypobranchial vessel (zebrafish) namespace: zebrafish_anatomy comment: May be the same as hypobranchial artery and may need to be merged. synonym: "hypobranchial vessels" EXACT PLURAL [] xref: TAO:0000214 xref: ZFIN:ZDB-ANAT-011113-144 is_a: UBERON:0001981 ! blood vessel [Term] id: ZFA:0000216 name: infracarinalis (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000216 xref: ZFIN:ZDB-ANAT-011113-146 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: ZFA:0000221 name: internal levator (zebrafish) namespace: zebrafish_anatomy synonym: "internal levators" EXACT PLURAL [] xref: TAO:0000221 xref: ZFIN:ZDB-ANAT-011113-150 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000222 name: isthmic primary nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "isthmic primary nuclei" EXACT PLURAL [] xref: TAO:0000222 xref: ZFIN:ZDB-ANAT-011113-152 is_a: UBERON:0004132 ! trigeminal sensory nucleus [Term] id: ZFA:0000224 name: larva namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-154 [Term] id: ZFA:0000225 name: lateral crista primordium (zebrafish) namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the lateral crista." [ZFIN:curator] synonym: "lateral crista primordia" EXACT PLURAL [] xref: TAO:0000225 xref: ZFIN:ZDB-ANAT-011113-155 is_a: UBERON:0003249 ! epithelium of otic placode relationship: part_of UBERON:0001843 ! lateral semicircular canal [Term] id: ZFA:0000226 name: lateral ethmoid (zebrafish) namespace: zebrafish_anatomy def: "Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales." [ZFIN:curator] synonym: "lateral ethmoids" EXACT PLURAL [] xref: TAO:0000226 xref: ZFIN:ZDB-ANAT-011113-156 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0006604 ! lamina orbitonasalis relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003112 ! olfactory region [Term] id: ZFA:0000228 name: lateral line primordium (zebrafish) namespace: zebrafish_anatomy def: "Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts." [ZFIN:curator] synonym: "lateral line primordia" EXACT PLURAL [] synonym: "llp" EXACT [] xref: TAO:0000228 xref: ZFIN:ZDB-ANAT-011113-158 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002540 ! lateral line system [Term] id: ZFA:0000230 name: longitudinal hypochordal (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000230 xref: ZFIN:ZDB-ANAT-011113-16 is_a: UBERON:0001630 ! muscle organ relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000232 name: otic vesicle lateral protrusion (zebrafish) namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is initially laterally located and then bifurcates and fuses anteriorly with the anterior protrusion, and posteriorly with the posterior protrusion." [ZFIN:ZDB-PUB-090330-11] synonym: "lateral semicircular canal primordia" RELATED PLURAL [] synonym: "lateral semicircular canal primordium" RELATED [] xref: TAO:0000232 xref: ZFIN:ZDB-ANAT-011113-161 is_a: ZFA:0001715 ! otic vesicle protrusion (zebrafish) [Term] id: ZFA:0000233 name: lower oral valve (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue, located on the lower jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration." [ZFIN:ZDB-PUB-060921-12] synonym: "breathing valve" RELATED [] synonym: "buccal valve " RELATED [] synonym: "lower internal lip" EXACT [ZFIN:ZDB-PUB-060921-12] synonym: "lower semilunar valve" EXACT [ZFIN:ZDB-PUB-060921-12] synonym: "mandibular valve" EXACT [] xref: TAO:0000233 xref: ZFIN:ZDB-ANAT-011113-162 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000695 ! labial cavity (zebrafish) [Term] id: ZFA:0000234 name: macula neglecta (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-0204030-4] synonym: "maculae neglecta" EXACT PLURAL [] xref: TAO:0000234 xref: ZFIN:ZDB-ANAT-011113-163 is_a: UBERON:0000054 ! macula relationship: develops_from ZFA:0000558 ! posterior macula (zebrafish) relationship: part_of UBERON:0002518 ! otolith organ [Term] id: ZFA:0000235 name: magnocellular superficial pretectal nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "magnocellular superficial pretectal nuclei" EXACT PLURAL [] xref: TAO:0000235 xref: ZFIN:ZDB-ANAT-011113-164 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000687 ! superficial pretectum (zebrafish) [Term] id: ZFA:0000236 name: mandibular muscle (zebrafish) namespace: zebrafish_anatomy synonym: "mandibular muscles" EXACT PLURAL [] xref: TAO:0000236 xref: ZFIN:ZDB-ANAT-011113-165 is_a: UBERON:0002376 ! muscle of head relationship: part_of UBERON:0004362 ! mandibular arch relationship: part_of UBERON:0004467 ! musculature of pharynx [Term] id: ZFA:0000237 name: medial forebrain bundle diencephalon (zebrafish) namespace: zebrafish_anatomy synonym: "medial forebrain bundles diencephalon" EXACT PLURAL [] xref: TAO:0000237 xref: ZFIN:ZDB-ANAT-011113-167 is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001910 ! medial forebrain bundle [Term] id: ZFA:0000238 name: medial olfactory tract (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral ventral telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "tractus olfactorius medialis" EXACT [] xref: TAO:0000238 xref: ZFIN:ZDB-ANAT-011113-168 is_a: ZFA:0000597 ! telencephalic white matter (zebrafish) [Term] id: ZFA:0000239 name: mesocoracoid bone (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:curator] synonym: "mesocoracoid bones" EXACT PLURAL [] xref: TAO:0000239 xref: ZFIN:ZDB-ANAT-011113-171 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001537 ! mesocoracoid cartilage (zebrafish) relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: ZFA:0000240 name: metapterygoid (zebrafish) namespace: zebrafish_anatomy def: "The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit." [ZFIN:curator] synonym: "metapterygoids" EXACT PLURAL [] xref: TAO:0000240 xref: ZFIN:ZDB-ANAT-011113-172 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: part_of UBERON:0001709 ! upper jaw [Term] id: ZFA:0000241 name: midline column (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000241 xref: ZFIN:ZDB-ANAT-011113-173 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation [Term] id: ZFA:0000245 name: nucleus of the descending root (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000245 xref: ZFIN:ZDB-ANAT-011113-177 is_a: UBERON:0004132 ! trigeminal sensory nucleus [Term] id: ZFA:0000246 name: nucleus taeniae (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which is located immediately ventral to the caudal zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000246 xref: ZFIN:ZDB-ANAT-011113-178 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of ZFA:0000505 ! dorsal telencephalon (zebrafish) [Term] id: ZFA:0000248 name: magnocellular preoptic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "magnocellular preoptic nuclei" EXACT PLURAL [] xref: TAO:0000248 xref: ZFIN:ZDB-ANAT-011113-18 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001928 ! preoptic area [Term] id: ZFA:0000250 name: opercle (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series." [ZFIN:Curator] synonym: "opercles" EXACT PLURAL [] xref: TAO:0000250 xref: ZFIN:ZDB-ANAT-011113-181 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of ZFA:0000555 ! opercular flap (zebrafish) relationship: part_of ZFA:0001401 ! dorsal hyoid arch (zebrafish) [Term] id: ZFA:0000251 name: opercular-branchiostegal series namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-182 [Term] id: ZFA:0000256 name: pars subcommissuralis of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy synonym: "pars subcommissuralis of V" EXACT [] xref: TAO:0000256 xref: ZFIN:ZDB-ANAT-011113-187 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000204 ! ventral telencephalon [Term] id: ZFA:0000259 name: mandibular lateral line (zebrafish) namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "mandibular lateral lines" EXACT PLURAL [] synonym: "mandibular line" EXACT [ZFIN:ZDB-PUB-000523-3] xref: TAO:0000259 xref: ZFIN:ZDB-ANAT-011113-19 is_a: UBERON:0010202 ! lateral line relationship: part_of ZFA:0001470 ! anterior lateral line (zebrafish) [Term] id: ZFA:0000261 name: pharyngohyoid (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000261 xref: ZFIN:ZDB-ANAT-011113-191 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000263 name: precaudal vertebra (zebrafish) namespace: zebrafish_anatomy def: "Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal." [ZFIN:ZDB-PUB-031103-13] synonym: "abdominal vertebra" RELATED [] synonym: "precaudal vertebrae" EXACT PLURAL [] synonym: "trunk vertebra" RELATED [] xref: TAO:0000263 xref: ZFIN:ZDB-ANAT-011113-193 is_a: UBERON:0002412 ! vertebra relationship: part_of UBERON:0002100 ! trunk [Term] id: ZFA:0000264 name: preopercle (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [ZFIN:curator] synonym: "preopercles" EXACT PLURAL [] xref: TAO:0000264 xref: ZFIN:ZDB-ANAT-011113-194 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of ZFA:0000555 ! opercular flap (zebrafish) relationship: part_of ZFA:0001401 ! dorsal hyoid arch (zebrafish) [Term] id: ZFA:0000265 name: presumptive dorsal mesoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000265 xref: ZFIN:ZDB-ANAT-011113-195 is_a: UBERON:0006603 ! presumptive mesoderm [Term] id: ZFA:0000266 name: pretecto-mamillary tract (zebrafish) namespace: zebrafish_anatomy synonym: "pretectomamillary tract" EXACT [] xref: TAO:0000266 xref: ZFIN:ZDB-ANAT-011113-196 is_a: UBERON:0003931 ! diencephalic white matter [Term] id: ZFA:0000267 name: primary olfactory fiber layer (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is the most peripheral layer and present only in the rostroventral olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "stratum nervosum bulbi olfactorii" EXACT [] xref: TAO:0000267 xref: ZFIN:ZDB-ANAT-011113-197 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: ZFA:0000268 name: anal fin proximal radial (zebrafish) namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials." [ZFIN:curator] synonym: "anal fin proximal radials" EXACT PLURAL [] xref: TAO:0000268 xref: ZFIN:ZDB-ANAT-011113-199 is_a: ZFA:0001646 ! anal fin radial (zebrafish) relationship: part_of ZFA:0001420 ! anal fin pterygiophore (zebrafish) [Term] id: ZFA:0000269 name: inferior ventral flexor (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000269 xref: ZFIN:ZDB-ANAT-011113-2 is_a: UBERON:0000366 ! flexor muscle relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000271 name: radial (zebrafish) namespace: zebrafish_anatomy def: "The internal skeletal supports of the median and paired fins." [TAO:curator] synonym: "radials" EXACT PLURAL [] xref: TAO:0000271 xref: ZFIN:ZDB-ANAT-011113-200 is_a: UBERON:0002513 ! endochondral bone [Term] id: ZFA:0000274 name: rostral octaval nucleus (zebrafish) namespace: zebrafish_anatomy def: "Octaval sensory nucleus located rostral to the magnocellular octaval nucleus and arches dorsally around the descending trigeminal root. Receives some vestibular information and is part of the vestibulo-ocular reflex circuitry and projects to abducens and oculomotor nuclei and descends to the spinal cord. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "anterior octaval nucleus" EXACT [] synonym: "nucleus octavus anterior" EXACT [] xref: TAO:0000274 xref: ZFIN:ZDB-ANAT-011113-204 is_a: ZFA:0000401 ! octaval nerve sensory nucleus (zebrafish) [Term] id: ZFA:0000276 name: rostrolateral thalamic nucleus of Butler & Saidel (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000276 xref: ZFIN:ZDB-ANAT-011113-206 is_a: UBERON:0002776 ! ventral nuclear group relationship: part_of UBERON:0001900 ! subthalamus [Term] id: ZFA:0000278 name: secondary gustatory nucleus medulla oblongata (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000278 xref: ZFIN:ZDB-ANAT-011113-208 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000280 name: medial valvula cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Medial division of the valvula cerebelli." [ZFIN:curator] synonym: "medial division" EXACT [] synonym: "valvula cerebelli, pars medialis" EXACT [] xref: TAO:0000280 xref: ZFIN:ZDB-ANAT-011113-21 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000603 ! valvula cerebelli (zebrafish) [Term] id: ZFA:0000281 name: hair cell posterior macula (zebrafish) namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "sensory hair cells posterior macula" EXACT PLURAL [] xref: TAO:0000281 xref: ZFIN:ZDB-ANAT-011113-210 is_a: CL:0000855 ! sensory hair cell relationship: develops_from ZFA:0001099 ! immature hair cell posterior macula (zebrafish) relationship: part_of ZFA:0000558 ! posterior macula (zebrafish) [Term] id: ZFA:0000283 name: sternohyoid (zebrafish) namespace: zebrafish_anatomy synonym: "sternohyoids" EXACT PLURAL [] xref: TAO:0000283 xref: ZFIN:ZDB-ANAT-011113-212 is_a: ZFA:0000236 ! mandibular muscle (zebrafish) [Term] id: ZFA:0000284 name: subopercle (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone lying below the opercle. The subopercle is a paired bone." [ZFIN:curator] synonym: "subopercles" EXACT PLURAL [] xref: TAO:0000284 xref: ZFIN:ZDB-ANAT-011113-213 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of ZFA:0000555 ! opercular flap (zebrafish) relationship: part_of ZFA:0001401 ! dorsal hyoid arch (zebrafish) [Term] id: ZFA:0000285 name: superficial adductor (zebrafish) namespace: zebrafish_anatomy synonym: "adductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "superficial adductors" EXACT PLURAL [] xref: TAO:0000285 xref: ZFIN:ZDB-ANAT-011113-214 is_a: UBERON:0000952 ! adductor muscle relationship: part_of UBERON:0007269 ! fore limb/fin musculature [Term] id: ZFA:0000286 name: superficial lateralis (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000286 xref: ZFIN:ZDB-ANAT-011113-215 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: ZFA:0000287 name: superior dorsal flexor (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000287 xref: ZFIN:ZDB-ANAT-011113-216 is_a: UBERON:0000366 ! flexor muscle relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000288 name: supracarinalis (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000288 xref: ZFIN:ZDB-ANAT-011113-217 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: ZFA:0000289 name: supramaxillae namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-218 [Term] id: ZFA:0000291 name: medial octavolateralis nucleus (zebrafish) namespace: zebrafish_anatomy def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [ZFIN:curator] synonym: "MON" RELATED [] synonym: "intermediate octavolateral nucleus" EXACT [] synonym: "medial octavolateralis nuclei" EXACT PLURAL [] xref: TAO:0000291 xref: ZFIN:ZDB-ANAT-011113-22 is_a: ZFA:0000381 ! lateral line sensory nucleus (zebrafish) relationship: part_of UBERON:0002037 ! cerebellum [Term] id: ZFA:0000293 name: synencephalon (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is located between the dorsal diencephalon and the mesencephalon and contains the caudal commissure. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000293 xref: ZFIN:ZDB-ANAT-011113-221 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: ZFA:0000294 name: torus lateralis (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "lateral torus" EXACT [] xref: TAO:0000294 xref: ZFIN:ZDB-ANAT-011113-222 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0000296 name: uncrossed tecto-bulbar tract (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000296 xref: ZFIN:ZDB-ANAT-011113-225 is_a: UBERON:0002164 ! tectobulbar tract [Term] id: ZFA:0000297 name: motor nucleus of vagal nerve (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0000387 synonym: "motor nucleus X" EXACT [] synonym: "nX" EXACT [] synonym: "nucleus motorius of nervi vagi" EXACT [] synonym: "vagal lobe" RELATED [] xref: TAO:0000297 xref: ZFIN:ZDB-ANAT-011113-226 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000298 name: vent (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000298 xref: ZFIN:ZDB-ANAT-011113-227 is_a: UBERON:0003102 ! surface structure [Term] id: ZFA:0000299 name: ventral entopeduncular nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon that is a band of tightly packed cells starting at the level of the anterior commissure and extends into the telencephalo-diencephalic boundary region. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "ENv" EXACT [] synonym: "endopeduncular nucleus, ventral part" EXACT [] synonym: "entopeduncular nucleus, ventral part" EXACT [] synonym: "nucleus entopeduncularis, pars ventralis" EXACT [] synonym: "ventral entopeduncular nucleus V" EXACT [] xref: TAO:0000299 xref: ZFIN:ZDB-ANAT-011113-228 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0000300 name: ventral hypohyal bone (zebrafish) namespace: zebrafish_anatomy def: "The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm)." [ZFIN:curator] synonym: "lower hypohyal" EXACT [] synonym: "ventrohyal" EXACT [] xref: TAO:0000300 xref: ZFIN:ZDB-ANAT-011113-229 is_a: UBERON:0004751 ! hypohyal bone [Term] id: ZFA:0000302 name: ventral habenular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Habenular nucleus positioned ventromedially to the dorsal habenular nuclei. The axons of the ventral habenular nucleus passed laterally through the interpeduncular nucleus and projected to the ventral part of the median raphe. The ventral habenular nucleus is homolog mammalian lateral habenular nucleus." [ZFIN:ZDB-PUB-100202-7] xref: TAO:0000302 xref: ZFIN:ZDB-ANAT-011113-230 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001904 ! habenula [Term] id: ZFA:0000305 name: ventral sulcus (zebrafish) namespace: zebrafish_anatomy def: "Groove that separates the paired inferior (or lateral) lobes of the hypothalamus from the tuberal hypothalamus." [http:en.wikipedia.org/wiki/Hypothalamic_sulcus] synonym: "hypothalamic sulcus" RELATED [] xref: TAO:0000305 xref: ZFIN:ZDB-ANAT-011113-233 is_a: UBERON:0006846 ! groove relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: ZFA:0000307 name: vestibulolateralis lobe (zebrafish) namespace: zebrafish_anatomy def: "Brain structure which is part of the cerebellum consists of the paired granular eminentia and the medial caudal lobe. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000307 xref: ZFIN:ZDB-ANAT-011113-235 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: ZFA:0000309 name: E-YSL (zebrafish) namespace: zebrafish_anatomy def: "The portion of the YSL that is outside of the blastoderm margin during epiboly." [ZFIN:ZDB-PUB-961014-576] synonym: "external yolk syncytial layer" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000309 xref: ZFIN:ZDB-ANAT-011113-237 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000088 ! YSL (zebrafish) [Term] id: ZFA:0000311 name: adductor mandibulae complex (zebrafish) namespace: zebrafish_anatomy def: "Is a mandibular muscle that consists of three subdivisions A1, A2, and A3. All three originate on the hyomandibula and suspensorium but each has a distinct insertion. A1 inserts on the maxilla, A2 inserts along the caudal margin of the articular and A3 inserts on the medial surface of the articular." [ZFIN:ZDB-PUB-070330-4] xref: TAO:0000311 xref: ZFIN:ZDB-ANAT-011113-239 is_a: UBERON:0000952 ! adductor muscle relationship: develops_from ZFA:0007049 ! adductor mandibulae (zebrafish) [Term] id: ZFA:0000313 name: anal inclinator (zebrafish) namespace: zebrafish_anatomy synonym: "anal inclinators" EXACT PLURAL [] xref: TAO:0000313 xref: ZFIN:ZDB-ANAT-011113-240 is_a: ZFA:0005276 ! inclinator muscle (zebrafish) relationship: part_of ZFA:0001154 ! anal fin musculature (zebrafish) [Term] id: ZFA:0000315 name: asteriscus (zebrafish) namespace: zebrafish_anatomy def: "Otolith part of lagena." [ZFIN:ZDB-PUB-020403-4] synonym: "lagenar otolith" EXACT [] synonym: "lagenolith" EXACT [] xref: TAO:0000315 xref: ZFIN:ZDB-ANAT-011113-242 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001844 ! cochlea [Term] id: ZFA:0000316 name: basihyal bone (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch, the 'tongue' of the a fish. Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals." [ZFIN:curator] synonym: "basihyoid" EXACT [] synonym: "glossohyal" EXACT [] xref: TAO:0000316 xref: ZFIN:ZDB-ANAT-011113-243 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001510 ! basihyal cartilage (zebrafish) relationship: part_of ZFA:0001402 ! ventral hyoid arch (zebrafish) [Term] id: ZFA:0000318 name: brainstem and spinal white matter (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter that is part of the brain stem or spinal cord." [ZFIN:curator] synonym: "brain stem and spinal tract/commissure" EXACT [] synonym: "brain stem/spinal tracts and commissures" EXACT PLURAL [] xref: TAO:0000318 xref: ZFIN:ZDB-ANAT-011113-245 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002298 ! brainstem [Term] id: ZFA:0000319 name: branchiostegal membrane (zebrafish) namespace: zebrafish_anatomy def: "The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber." [http://www.fishbase.org/glossary/Glossary.php?q=branchiostegal+membrane] synonym: "branchiostegal membranes" EXACT PLURAL [] xref: TAO:0000319 xref: ZFIN:ZDB-ANAT-011113-246 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002535 ! gill [Term] id: ZFA:0000321 name: caudal levator (zebrafish) namespace: zebrafish_anatomy synonym: "caudal levators" EXACT PLURAL [] xref: TAO:0000321 xref: ZFIN:ZDB-ANAT-011113-248 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000322 name: caudal octaval nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "caudal octaval nuclei" EXACT PLURAL [] xref: TAO:0000322 xref: ZFIN:ZDB-ANAT-011113-249 is_a: ZFA:0000401 ! octaval nerve sensory nucleus (zebrafish) [Term] id: ZFA:0000323 name: mesethmoid bone (zebrafish) namespace: zebrafish_anatomy def: "Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesethmoid meets the preethmoids in synchondroses." [ZFIN:curator] synonym: "ethmoid bone" EXACT [] xref: TAO:0000323 xref: ZFIN:ZDB-ANAT-011113-25 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0005945 ! neurocranial trabecula relationship: develops_from ZFA:0001405 ! ethmoid cartilage (zebrafish) relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003112 ! olfactory region [Term] id: ZFA:0000324 name: caudal periventricular hypothalamus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the caudal hypothalamus and surrounds the paired posterior ventricular recesses of the third ventricle. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "caudal zone of periventricular hypothalamus" EXACT [] synonym: "nucleus periventricularis hypothalami, zona caudalis" EXACT [] xref: TAO:0000324 xref: ZFIN:ZDB-ANAT-011113-250 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000634 ! caudal hypothalamic zone (zebrafish) [Term] id: ZFA:0000331 name: commissure infima of Haller (zebrafish) namespace: zebrafish_anatomy synonym: "commissura infima Halleri" EXACT [] synonym: "commissura infima of Haller" EXACT [] xref: TAO:0000331 xref: ZFIN:ZDB-ANAT-011113-258 is_a: ZFA:0000318 ! brainstem and spinal white matter (zebrafish) [Term] id: ZFA:0000335 name: crossed tecto-bulbar tract (zebrafish) namespace: zebrafish_anatomy synonym: "tractus tectobulbaris cruciatus" EXACT [] xref: TAO:0000335 xref: ZFIN:ZDB-ANAT-011113-261 is_a: UBERON:0002164 ! tectobulbar tract [Term] id: ZFA:0000336 name: hypural arches namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-262 [Term] id: ZFA:0000337 name: dermopalatine namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-263 [Term] id: ZFA:0000340 name: dorsal entopeduncular nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon which is a band of tightly packed cells starting at the level of the anterior commissure and disappearing more rostrally. May be homologous to the intermediate nucleus of the area ventralis of other species. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "ENd" EXACT [] synonym: "endopeduncular nucleus, dorsal part" EXACT [] synonym: "entopeduncular nucleus, dorsal part" EXACT [] synonym: "nucleus entopeduncularis, pars dorsalis" EXACT [] xref: TAO:0000340 xref: ZFIN:ZDB-ANAT-011113-266 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0000341 name: dorsal flexor (zebrafish) namespace: zebrafish_anatomy synonym: "dorsal flexors" EXACT PLURAL [] xref: TAO:0000341 xref: ZFIN:ZDB-ANAT-011113-267 is_a: UBERON:0000366 ! flexor muscle relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000342 name: dorsal inclinator (zebrafish) namespace: zebrafish_anatomy synonym: "dorsal inclinators" EXACT PLURAL [] xref: TAO:0000342 xref: ZFIN:ZDB-ANAT-011113-268 is_a: ZFA:0005276 ! inclinator muscle (zebrafish) relationship: part_of ZFA:0000648 ! dorsal fin musculature (zebrafish) [Term] id: ZFA:0000343 name: dorsal nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Periventricular nucleus which lies rostral to the anterior commissure and is contiguous caudally with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus dorsalis" EXACT [] synonym: "dorsal division of ventral telencephalic area" RELATED [] synonym: "dorsal nucleus of V" EXACT [] xref: TAO:0000343 xref: ZFIN:ZDB-ANAT-011113-269 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0000347 name: dorsal hypothalamic zone (zebrafish) namespace: zebrafish_anatomy def: "Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000347 xref: ZFIN:ZDB-ANAT-011113-272 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from ZFA:0006000 ! intermediate hypothalamus (zebrafish) relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: ZFA:0000348 name: duodenum namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-273 [Term] id: ZFA:0000349 name: epaxialis (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000349 xref: ZFIN:ZDB-ANAT-011113-274 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: ZFA:0000350 name: epipleural (zebrafish) namespace: zebrafish_anatomy def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [ZFIN:curator] synonym: "epipleurals" EXACT PLURAL [] xref: TAO:0000350 xref: ZFIN:ZDB-ANAT-011113-275 is_a: ZFA:0000526 ! intermuscular bone (zebrafish) [Term] id: ZFA:0000352 name: external cellular layer (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is located between the glomerular layer and internal cellular layer of the olfactory bulb, and contains large mitral cells whose efferent axons form most of the lateral and medial olfactory tracts. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "stratum cellulare externum bulbi olfactorii" EXACT [] xref: TAO:0000352 xref: ZFIN:ZDB-ANAT-011113-277 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: ZFA:0000356 name: gill raker (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7. The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth." [http:www.briancoad.com/Dictionary/G.htm] synonym: "gill rakers" EXACT PLURAL [] xref: TAO:0000356 xref: ZFIN:ZDB-ANAT-011113-280 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0000358 name: granular layer corpus cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is the innermost layer of the corpus cerebelli and consists of small granule cells and larger Golgi cells. The granule cell receive excitatory input from the mossy fibers, and send parallel fibers to the molecular layer where they synapse with Purkinje cell dendrites." [ZFIN:curator] xref: TAO:0000358 xref: ZFIN:ZDB-ANAT-011113-282 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000188 ! corpus cerebelli (zebrafish) [Term] id: ZFA:0000362 name: hypaxialis (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000362 xref: ZFIN:ZDB-ANAT-011113-287 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: ZFA:0000363 name: hypobranchial bone (zebrafish) namespace: zebrafish_anatomy def: "Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials." [ZFIN:curator] synonym: "hypobranchial bones" EXACT PLURAL [] xref: TAO:0000363 xref: ZFIN:ZDB-ANAT-011113-288 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001522 ! hypobranchial cartilage (zebrafish) relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0000364 name: hypural (zebrafish) namespace: zebrafish_anatomy def: "Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length)." [ZFIN:ZDB-PUB-011008-1] synonym: "hyp" EXACT [] synonym: "hypuralia" EXACT [] synonym: "hypurals" EXACT PLURAL [] xref: TAO:0000364 xref: ZFIN:ZDB-ANAT-011113-289 is_a: ZFA:0000859 ! specialized hemal arch and spine (zebrafish) [Term] id: ZFA:0000367 name: infraorbital bridge namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-291 [Term] id: ZFA:0000369 name: intermandibularis (zebrafish) namespace: zebrafish_anatomy def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [ZFIN:curator] synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12] xref: TAO:0000369 xref: ZFIN:ZDB-ANAT-011113-293 is_a: ZFA:0000236 ! mandibular muscle (zebrafish) [Term] id: ZFA:0000371 name: internal pharyngoclavicularis (zebrafish) namespace: zebrafish_anatomy synonym: "internal pharyngoclavicularae" EXACT PLURAL [] xref: TAO:0000371 xref: ZFIN:ZDB-ANAT-011113-295 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000372 name: interpeduncular nucleus medulla oblongata (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000372 xref: ZFIN:ZDB-ANAT-011113-296 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000373 name: juvenile namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-297 [Term] id: ZFA:0000375 name: last preural centrum namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-299 [Term] id: ZFA:0000376 name: infraorbital (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0000489 def: "Dermal bone that is situated under or posterior to the eye and associated with the infraorbital sensory canal." [ZFIN:curator] xref: TAO:0000376 xref: ZFIN:ZDB-ANAT-011113-3 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0001697 ! orbit relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0000379 name: lateral forebrain bundle diencephalon (zebrafish) namespace: zebrafish_anatomy synonym: "lateral forebrain bundles diencephalon" EXACT PLURAL [] xref: TAO:0000379 xref: ZFIN:ZDB-ANAT-011113-301 is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of ZFA:0007012 ! lateral forebrain bundle (zebrafish) [Term] id: ZFA:0000381 name: lateral line sensory nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "lateral line sensory nuclei" EXACT PLURAL [] xref: TAO:0000381 xref: ZFIN:ZDB-ANAT-011113-303 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000384 name: levator arcus palatini (zebrafish) namespace: zebrafish_anatomy def: "Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics." [ZFIN:ZDB-PUB-020703-2] synonym: "levators arcus palatini" EXACT PLURAL [] xref: TAO:0000384 xref: ZFIN:ZDB-ANAT-011113-307 is_a: ZFA:0000236 ! mandibular muscle (zebrafish) relationship: develops_from ZFA:0007050 ! constrictor dorsalis (zebrafish) [Term] id: ZFA:0000388 name: medial caudal lobe (zebrafish) namespace: zebrafish_anatomy def: "Brain structure which is part of the vestibulolateralis lobe of the cerebellum. The medial caudal lobe receives primary octaval (presumably vestibular) as well as lateral line projections. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "caudal lobe of cerebellum" EXACT [] synonym: "lobus caudalis cerebelli" EXACT [] xref: TAO:0000388 xref: ZFIN:ZDB-ANAT-011113-311 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000307 ! vestibulolateralis lobe (zebrafish) [Term] id: ZFA:0000389 name: medial funicular nucleus medulla oblongata (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000389 xref: ZFIN:ZDB-ANAT-011113-312 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000390 name: medial preglomerular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "medial preglomerular nuclei" EXACT PLURAL [] xref: TAO:0000390 xref: ZFIN:ZDB-ANAT-011113-313 is_a: ZFA:0001662 ! preglomerular nucleus (zebrafish) [Term] id: ZFA:0000391 name: medial zone of dorsal telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which is medially located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area dorsalis telencephali, zona medialis" EXACT [] synonym: "medial zone of D" EXACT [] synonym: "medial zone of dorsal telencephalic area" EXACT [] xref: TAO:0000391 xref: ZFIN:ZDB-ANAT-011113-314 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of ZFA:0000505 ! dorsal telencephalon (zebrafish) [Term] id: ZFA:0000392 name: median tuberal portion (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000392 xref: ZFIN:ZDB-ANAT-011113-315 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: ZFA:0000394 name: molecular layer corpus cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is the outermost layer of the corpus cerebelli and consists largely of axons and dendrites. Other cell types such as stellate and basket neurons are also found in the molecular layer." [ZFIN:curator] xref: TAO:0000394 xref: ZFIN:ZDB-ANAT-011113-317 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000188 ! corpus cerebelli (zebrafish) [Term] id: ZFA:0000395 name: muscle pioneer somite 2 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 2" EXACT PLURAL [] xref: TAO:0000395 xref: ZFIN:ZDB-ANAT-011113-318 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000843 ! slow muscle cell somite 2 (zebrafish) [Term] id: ZFA:0000397 name: nucleus subglomerulosis (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000397 xref: ZFIN:ZDB-ANAT-011113-32 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0000398 name: nucleus isthmi (zebrafish) namespace: zebrafish_anatomy def: "The nucleus isthmi is a hindbrain nucleus located in the tegmentum of rhombomere 1 close to the secondary gustatory nucleus. It projects to and receives excitatory visual input from the ipsilateral optic tectum and the parvocellular and/or magnocellular superficial pretectal nucleus." [ZFIN:ZDB-PUB-100601-20] xref: TAO:0000398 xref: ZFIN:ZDB-ANAT-011113-320 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000399 name: secondary gustatory nucleus trigeminal nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "secondary gustatory nucleus trigeminal nuclei" EXACT PLURAL [] xref: TAO:0000399 xref: ZFIN:ZDB-ANAT-011113-321 is_a: UBERON:0004132 ! trigeminal sensory nucleus [Term] id: ZFA:0000401 name: octaval nerve sensory nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "cranial nerve VIII sensory nucleus" EXACT [] synonym: "octaval nerve sensory nuclei" EXACT PLURAL [] xref: TAO:0000401 xref: ZFIN:ZDB-ANAT-011113-323 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000404 name: paracommissural nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon and is located adjacent to the caudal commissure. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000404 xref: ZFIN:ZDB-ANAT-011113-329 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000293 ! synencephalon (zebrafish) [Term] id: ZFA:0000406 name: parvocellular superficial pretectal nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "parvocellular superficial pretectal nuclei" EXACT PLURAL [] xref: TAO:0000406 xref: ZFIN:ZDB-ANAT-011113-330 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000687 ! superficial pretectum (zebrafish) [Term] id: ZFA:0000408 name: periventricular nucleus of caudal tuberculum (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located between the ventral thalamus and the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "periventricular nucleus of posterior tuberculum" EXACT [] xref: TAO:0000408 xref: ZFIN:ZDB-ANAT-011113-333 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0000410 name: postcleithrum (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts." [ZFIN:curator] synonym: "postcleithra" EXACT PLURAL [] xref: TAO:0000410 xref: ZFIN:ZDB-ANAT-011113-335 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: ZFA:0000411 name: posterior crista primordium (zebrafish) namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the posterior crista." [ZFIN:curator] synonym: "posterior crista primordia" EXACT PLURAL [] xref: TAO:0000411 xref: ZFIN:ZDB-ANAT-011113-336 is_a: UBERON:0003249 ! epithelium of otic placode relationship: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: ZFA:0000412 name: otic vesicle posterior protrusion (zebrafish) namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the posterior semicircular canal." [ZFIN:ZDB-PUB-090330-11] synonym: "posterior semicircular canal primordia" RELATED PLURAL [] synonym: "posterior semicircular canal primordium" RELATED [] xref: TAO:0000412 xref: ZFIN:ZDB-ANAT-011113-337 is_a: ZFA:0001715 ! otic vesicle protrusion (zebrafish) [Term] id: ZFA:0000414 name: presumptive cephalic mesoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000414 xref: ZFIN:ZDB-ANAT-011113-339 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000926 ! mesoderm [Term] id: ZFA:0000419 name: pterosphenoid (zebrafish) namespace: zebrafish_anatomy def: "Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves." [ZFIN:curator] synonym: "pterosphenoids" EXACT PLURAL [] xref: TAO:0000419 xref: ZFIN:ZDB-ANAT-011113-345 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001515 ! taenia marginalis posterior (zebrafish) relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003111 ! sphenoid region [Term] id: ZFA:0000422 name: retroarticular (zebrafish) namespace: zebrafish_anatomy def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [ZFIN:curator] synonym: "retroarticulars" EXACT PLURAL [] xref: TAO:0000422 xref: ZFIN:ZDB-ANAT-011113-348 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0003107 ! Meckel's cartilage relationship: part_of UBERON:0001710 ! lower jaw [Term] id: ZFA:0000424 name: opercular lateral line (zebrafish) namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "opercular lateral lines" EXACT PLURAL [] xref: TAO:0000424 xref: ZFIN:ZDB-ANAT-011113-35 is_a: UBERON:0010202 ! lateral line relationship: part_of ZFA:0001470 ! anterior lateral line (zebrafish) [Term] id: ZFA:0000425 name: anterior lateral line nerve (zebrafish) namespace: zebrafish_anatomy def: "Cranial nerve which enters the brain between cranial nerves VI and VII and projects to a dorsal medullary area between cerebellum and vagal lobe. Contains afferents and sensory efferents to the anterior lateral line ganglia. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "ALLn" EXACT [] synonym: "nervi lineae lateralis anterioris" EXACT [] synonym: "rostral lateral line nerve" EXACT [] xref: TAO:0000425 xref: ZFIN:ZDB-ANAT-011113-350 is_a: UBERON:0001785 ! cranial nerve is_a: UBERON:0008906 ! lateral line nerve relationship: part_of ZFA:0001468 ! anterior lateral line system (zebrafish) [Term] id: ZFA:0000426 name: rostral parvocellular preoptic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "anterior parvocellular preoptic nucleus" EXACT [] synonym: "rostral parvocellular preoptic nuclei" EXACT PLURAL [] xref: TAO:0000426 xref: ZFIN:ZDB-ANAT-011113-351 is_a: ZFA:0001680 ! parvocellular preoptic nucleus (zebrafish) relationship: part_of UBERON:0001928 ! preoptic area [Term] id: ZFA:0000429 name: scaphium (zebrafish) namespace: zebrafish_anatomy def: "The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process." [ZFIN:curator] xref: TAO:0000429 xref: ZFIN:ZDB-ANAT-011113-354 is_a: UBERON:0003861 ! vertebral arch relationship: part_of UBERON:0001092 ! first cervical vertebra relationship: part_of ZFA:0000461 ! Weberian ossicle (zebrafish) [Term] id: ZFA:0000430 name: secondary gustatory tract (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000430 xref: ZFIN:ZDB-ANAT-011113-355 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000437 name: stomach namespace: zebrafish_anatomy is_obsolete: true xref: TAO:0002121 xref: ZFIN:ZDB-ANAT-011113-361 [Term] id: ZFA:0000438 name: parhypural (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0000562 def: "Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the ventral aorta passes." [ZFIN:ZDB-PUB-011008-1] synonym: "parhyural" EXACT [] synonym: "phy" EXACT [] xref: TAO:0000438 xref: ZFIN:ZDB-ANAT-011113-363 is_a: ZFA:0000859 ! specialized hemal arch and spine (zebrafish) relationship: part_of ZFA:0000557 ! preural 1 vertebra (zebrafish) [Term] id: ZFA:0000439 name: superficial pelvic abductor (zebrafish) namespace: zebrafish_anatomy synonym: "superficial pelvic abductors" EXACT PLURAL [] xref: TAO:0000439 xref: ZFIN:ZDB-ANAT-011113-364 is_a: UBERON:0006845 ! abductor muscle relationship: part_of UBERON:0007270 ! hind limb/fin musculature [Term] id: ZFA:0000440 name: superior raphe nucleus (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain nucleus that is located in ventral rhombomeres 1-3 and gives rise to ascending fibers innervating most areas of the brain. Early in development, both the superior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections of superior raphe nucleus restricted to anterior." [ZFIN:ZDB-PUB-081114-19] comment: May be homologous to the dorsal raphe nucleus of human mouse and rat. ZDB-PUB-081008-18 synonym: "anterior raphe nucleus" EXACT [] xref: TAO:0000440 xref: ZFIN:ZDB-ANAT-011113-365 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0004684 ! raphe nuclei [Term] id: ZFA:0000442 name: supraneural (zebrafish) namespace: zebrafish_anatomy def: "Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001)." [ZFIN:curator] synonym: "sn" EXACT [] xref: TAO:0000442 xref: ZFIN:ZDB-ANAT-011113-367 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: ZFA:0000448 name: tertiary gustatory nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located ventral to the medial preglomerular nucleus in the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000448 xref: ZFIN:ZDB-ANAT-011113-372 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0000449 name: torus longitudinalis (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes." [ZFIN:curator] synonym: "tori longitudinalis" EXACT PLURAL [] xref: TAO:0000449 xref: ZFIN:ZDB-ANAT-011113-373 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from ZFA:0001357 ! alar plate midbrain region (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0000451 name: upper oral valve (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue, located on the upper jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration." [ZFIN:ZDB-PUB-060921-12] synonym: "breathing valve" RELATED [] synonym: "buccal valve" RELATED [] synonym: "maxillary valve " EXACT [] synonym: "upper internal lip" RELATED [ZFIN:ZDB-PUB-060921-12] synonym: "upper semilunar valve " EXACT [ZFIN:ZDB-PUB-060921-12] xref: TAO:0000451 xref: ZFIN:ZDB-ANAT-011113-375 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000695 ! labial cavity (zebrafish) [Term] id: ZFA:0000452 name: urohyal (zebrafish) namespace: zebrafish_anatomy def: "The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990)." [ZFIN:curator] xref: TAO:0000452 xref: ZFIN:ZDB-ANAT-011113-376 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of ZFA:0001402 ! ventral hyoid arch (zebrafish) [Term] id: ZFA:0000454 name: ventral accessory optic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and is ventromedial to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. The ventral accessory optic nucleus is very large in zebrafish as compared to other cyprinids. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000454 xref: ZFIN:ZDB-ANAT-011113-378 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000183 ! central pretectum (zebrafish) [Term] id: ZFA:0000455 name: ventral flexor (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000455 xref: ZFIN:ZDB-ANAT-011113-379 is_a: UBERON:0000366 ! flexor muscle relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000456 name: ventral nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Periventricular nucleus which lies rostral to the anterior commissure of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus ventralis" EXACT [] synonym: "ventral division of ventral telencephalic area" RELATED [] synonym: "ventral nucleus of V" EXACT [] xref: TAO:0000456 xref: ZFIN:ZDB-ANAT-011113-380 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0000459 name: ventromedial thalamic nucleus (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000459 xref: ZFIN:ZDB-ANAT-011113-384 is_a: UBERON:0002776 ! ventral nuclear group relationship: part_of UBERON:0001900 ! subthalamus [Term] id: ZFA:0000460 name: Mauthner axon namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-386 [Term] id: ZFA:0000461 name: Weberian ossicle (zebrafish) namespace: zebrafish_anatomy def: "A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle." [ZFIN:ZDB-PUB-011008-1] synonym: "Weberian ossicles" EXACT PLURAL [] xref: TAO:0000461 xref: ZFIN:ZDB-ANAT-011113-387 is_a: UBERON:0000491 ! solid compound organ relationship: part_of ZFA:0001188 ! Weberian apparatus (zebrafish) [Term] id: ZFA:0000462 name: abductor hyohyoid (zebrafish) namespace: zebrafish_anatomy synonym: "abductors hyohyoid" EXACT PLURAL [] xref: TAO:0000462 xref: ZFIN:ZDB-ANAT-011113-388 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0000463 name: adductor (zebrafish) namespace: zebrafish_anatomy synonym: "adductors" EXACT PLURAL [] xref: TAO:0000463 xref: ZFIN:ZDB-ANAT-011113-389 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000464 name: otic lateral line (zebrafish) namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "otic lateral lines" EXACT PLURAL [] xref: TAO:0000464 xref: ZFIN:ZDB-ANAT-011113-39 is_a: UBERON:0010202 ! lateral line relationship: part_of ZFA:0001470 ! anterior lateral line (zebrafish) [Term] id: ZFA:0000465 name: adductor operculi (zebrafish) namespace: zebrafish_anatomy def: "Is a hyoid muscle that moves the auditory capsules with the opercles." [ZFIN:ZDB-PUB-020703-2] synonym: "adductor operculae" EXACT PLURAL [] xref: TAO:0000465 xref: ZFIN:ZDB-ANAT-011113-390 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0000466 name: anal depressor (zebrafish) namespace: zebrafish_anatomy synonym: "anal depressors" EXACT PLURAL [] xref: TAO:0000466 xref: ZFIN:ZDB-ANAT-011113-391 is_a: ZFA:0005270 ! depressor muscle (zebrafish) relationship: part_of ZFA:0001154 ! anal fin musculature (zebrafish) [Term] id: ZFA:0000468 name: anterior crista primordium (zebrafish) namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the anterior crista." [ZFIN:curator] synonym: "anterior crista primordia" EXACT PLURAL [] xref: TAO:0000468 xref: ZFIN:ZDB-ANAT-011113-393 is_a: UBERON:0003249 ! epithelium of otic placode relationship: part_of UBERON:0001841 ! anterior semicircular canal [Term] id: ZFA:0000469 name: otic vesicle anterior protrusion (zebrafish) namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the anterior semicircular canal." [ZFIN:ZDB-PUB-090330-11] synonym: "anterior semicircular canal primordia" RELATED PLURAL [] synonym: "anterior semicircular canal primordium" RELATED [] xref: TAO:0000469 xref: ZFIN:ZDB-ANAT-011113-394 is_a: ZFA:0001715 ! otic vesicle protrusion (zebrafish) [Term] id: ZFA:0000474 name: intercalar (zebrafish) namespace: zebrafish_anatomy def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [ZFIN:curator] synonym: "opisthotic" EXACT [] xref: TAO:0000474 xref: ZFIN:ZDB-ANAT-011113-4 is_a: UBERON:0007842 ! membrane bone relationship: part_of UBERON:0003110 ! otic region [Term] id: ZFA:0000475 name: paraventricular organ (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located anterior to the caudal tuberal nucleus and contains tyrosine hydroxylase immunoreactive CSF contacting bipolar cells." [ZFIN:ZDB-PUB-001220-2] synonym: "PVO" EXACT [] xref: TAO:0000475 xref: ZFIN:ZDB-ANAT-011113-40 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0000476 name: branchiostegal ray (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal." [ZFIN:curator] synonym: "branchiostegal rays" EXACT PLURAL [] xref: TAO:0000476 xref: ZFIN:ZDB-ANAT-011113-400 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of ZFA:0001402 ! ventral hyoid arch (zebrafish) [Term] id: ZFA:0000479 name: caudal mesencephalo-cerebellar tract (zebrafish) namespace: zebrafish_anatomy def: "Brainstem tract which carries cerebellar afferents from the dorsal tegmental nucleus and nucleus lateralis valvulae. Fuses with the rostral mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "posterior mesencephalo-cerebellar tract" EXACT [] xref: TAO:0000479 xref: ZFIN:ZDB-ANAT-011113-403 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002298 ! brainstem relationship: part_of ZFA:0000643 ! rostral cerebellar tract (zebrafish) [Term] id: ZFA:0000480 name: caudal octavolateralis nucleus (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "nucleus octavolateralis caudalis" EXACT [] xref: TAO:0000480 xref: ZFIN:ZDB-ANAT-011113-404 is_a: ZFA:0000381 ! lateral line sensory nucleus (zebrafish) [Term] id: ZFA:0000481 name: caudal preglomerular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Preglomerular nucleus which is the most caudomedial of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "nucleus praeglomerulosus caudalis" EXACT [] xref: TAO:0000481 xref: ZFIN:ZDB-ANAT-011113-405 is_a: ZFA:0001662 ! preglomerular nucleus (zebrafish) [Term] id: ZFA:0000482 name: caudal tuberal nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located posterior to the paraventricular organ." [ZFIN:ZDB-PUB-001220-2] synonym: "posterior tuberal nucleus" EXACT [] xref: TAO:0000482 xref: ZFIN:ZDB-ANAT-011113-406 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0000484 name: celiacomesenteric artery (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000484 xref: ZFIN:ZDB-ANAT-011113-408 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0000485 name: central nucleus inferior lobe (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "central nucleus inferior lobes" EXACT PLURAL [] synonym: "central nucleus of the inferior lobe" EXACT [] synonym: "nucleus centralis lobi inferioris hypothalami" EXACT [] xref: TAO:0000485 xref: ZFIN:ZDB-ANAT-011113-409 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000165 ! inferior lobe (zebrafish) [Term] id: ZFA:0000487 name: central zone of dorsal telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which is centrally located and is surrounded by the other four dorsal telencephalic regions. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area dorsalis telencephali, zona centralis" EXACT [] synonym: "central zone of D" EXACT [] xref: TAO:0000487 xref: ZFIN:ZDB-ANAT-011113-410 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of ZFA:0000505 ! dorsal telencephalon (zebrafish) [Term] id: ZFA:0000488 name: ceratobranchial bone (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials." [ZFIN:curator] synonym: "ceratobranchial bones" EXACT PLURAL [] xref: TAO:0000488 xref: ZFIN:ZDB-ANAT-011113-411 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0000491 name: commissure of the caudal tuberculum (zebrafish) namespace: zebrafish_anatomy synonym: "commissura tuberculi posterioris" EXACT [] synonym: "commissure of the posterior tuberculum" EXACT [] xref: TAO:0000491 xref: ZFIN:ZDB-ANAT-011113-414 is_a: UBERON:0003931 ! diencephalic white matter [Term] id: ZFA:0000492 name: coracoradialis (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000492 xref: ZFIN:ZDB-ANAT-011113-415 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0007269 ! fore limb/fin musculature [Term] id: ZFA:0000493 name: decussation of medial funicular nucleus (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000493 xref: ZFIN:ZDB-ANAT-011113-416 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000495 name: infraorbital 5 (zebrafish) namespace: zebrafish_anatomy def: "Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone." [ZFIN:curator] synonym: "dermosphenotic" EXACT [] xref: TAO:0000495 xref: ZFIN:ZDB-ANAT-011113-418 is_a: ZFA:0000376 ! infraorbital (zebrafish) relationship: part_of ZFA:0001649 ! infraorbital series (zebrafish) [Term] id: ZFA:0000497 name: pelvic adductor profundus (zebrafish) namespace: zebrafish_anatomy synonym: "pelvic adductors profundus" EXACT PLURAL [] xref: TAO:0000497 xref: ZFIN:ZDB-ANAT-011113-42 is_a: UBERON:0000952 ! adductor muscle relationship: part_of UBERON:0007270 ! hind limb/fin musculature [Term] id: ZFA:0000498 name: dilator operculi (zebrafish) namespace: zebrafish_anatomy def: "Mandibular muscle that inserts along the dorsolateral faces of the opercles." [ZFIN:ZDB-PUB-020703-2] synonym: "dilators operculi" EXACT PLURAL [] xref: TAO:0000498 xref: ZFIN:ZDB-ANAT-011113-420 is_a: ZFA:0000236 ! mandibular muscle (zebrafish) relationship: develops_from ZFA:0007050 ! constrictor dorsalis (zebrafish) [Term] id: ZFA:0000499 name: dorsal arrector (zebrafish) namespace: zebrafish_anatomy def: "The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke." [ZFIN:ZDB-PUB-050920-7] comment: Acts as antagonist to the ventral arrector. ZDB-PUB-050920 synonym: "arrector dorsalis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "dorsal arrectors" EXACT PLURAL [] xref: TAO:0000499 xref: ZFIN:ZDB-ANAT-011113-421 is_a: ZFA:0005275 ! arrector muscle (zebrafish) [Term] id: ZFA:0000500 name: dorsal erector (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin muscle that moves parts of the dorsal fin to an erect position. Antagonistic to dorsal depressor muscle." [ZFIN:curator] synonym: "dorsal erectors" EXACT PLURAL [] xref: TAO:0000500 xref: ZFIN:ZDB-ANAT-011113-422 is_a: ZFA:0005267 ! erector muscle (zebrafish) relationship: part_of ZFA:0000648 ! dorsal fin musculature (zebrafish) [Term] id: ZFA:0000502 name: dorsal motor nucleus trigeminal nerve (zebrafish) namespace: zebrafish_anatomy def: "Trigeminal motor nucleus that is located dorsal to the lateral longitudinal fascicle." [ISBN:3764351209] xref: TAO:0000502 xref: ZFIN:ZDB-ANAT-011113-424 is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve [Term] id: ZFA:0000503 name: dorsal oblique branchial muscle (zebrafish) namespace: zebrafish_anatomy synonym: "dorsal oblique branchial muscles" EXACT PLURAL [] xref: TAO:0000503 xref: ZFIN:ZDB-ANAT-011113-425 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000504 name: dorsal retractor (zebrafish) namespace: zebrafish_anatomy synonym: "dorsal retractors" EXACT PLURAL [] xref: TAO:0000504 xref: ZFIN:ZDB-ANAT-011113-426 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000505 name: dorsal telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Brain structure which is the dorsal part of the telencephalon, most of which is developmentally everted such that the ependymal lining of the unpaired median ventricle becomes located at the apparent periphery of the telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area dorsalis telencephali" EXACT [] synonym: "dorsal telencephalic area" EXACT [] xref: TAO:0000505 xref: ZFIN:ZDB-ANAT-011113-427 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: ZFA:0000506 name: dorsal zone of dorsal telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which is the most dorsally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area dorsalis telencephali, zona dorsalis" EXACT [] synonym: "dorsal zone of D" EXACT [] synonym: "dorsal zone of dorsal telencephalic area" EXACT [] xref: TAO:0000506 xref: ZFIN:ZDB-ANAT-011113-428 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of ZFA:0000505 ! dorsal telencephalon (zebrafish) [Term] id: ZFA:0000507 name: epineural (zebrafish) namespace: zebrafish_anatomy def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [ZFIN:curator] synonym: "epineurals" EXACT PLURAL [] xref: TAO:0000507 xref: ZFIN:ZDB-ANAT-011113-429 is_a: ZFA:0000526 ! intermuscular bone (zebrafish) [Term] id: ZFA:0000508 name: pelvic radial (zebrafish) namespace: zebrafish_anatomy def: "Internal skeletal supports of the pelvic fin." [TAO:curator] synonym: "pelvic radials" EXACT PLURAL [] xref: TAO:0000508 xref: ZFIN:ZDB-ANAT-011113-43 is_a: ZFA:0000271 ! radial (zebrafish) relationship: part_of UBERON:0007273 ! hind limb/fin skeleton [Term] id: ZFA:0000510 name: external levatores (zebrafish) namespace: zebrafish_anatomy synonym: "external levators" EXACT PLURAL [] xref: TAO:0000510 xref: ZFIN:ZDB-ANAT-011113-432 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000512 name: facial lobe (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain nucleus that doesn't project to the spinal cord." [ZFIN:ZDB-PUB-970218-12] synonym: "lobus facialis" EXACT [] xref: TAO:0000512 xref: ZFIN:ZDB-ANAT-011113-434 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000513 name: fast muscle cell somite 1 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 1" EXACT PLURAL [] xref: TAO:0000513 xref: ZFIN:ZDB-ANAT-011113-435 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000924 ! myotome somite 1 (zebrafish) [Term] id: ZFA:0000516 name: periventricular grey zone (zebrafish) namespace: zebrafish_anatomy synonym: "periventricular grey zones" EXACT PLURAL [] xref: TAO:0000516 xref: ZFIN:ZDB-ANAT-011113-44 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: ZFA:0000517 name: glossopharyngeal lobe (zebrafish) namespace: zebrafish_anatomy synonym: "lobus glossopharyngei" EXACT [] xref: TAO:0000517 xref: ZFIN:ZDB-ANAT-011113-440 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000520 name: horizontal commissure (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000520 xref: ZFIN:ZDB-ANAT-011113-443 is_a: UBERON:0003931 ! diencephalic white matter [Term] id: ZFA:0000522 name: inferior hyohyoid (zebrafish) namespace: zebrafish_anatomy synonym: "inferior hyohyoids" EXACT PLURAL [] xref: TAO:0000522 xref: ZFIN:ZDB-ANAT-011113-445 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0000523 name: inferior reticular formation (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000523 xref: ZFIN:ZDB-ANAT-011113-446 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of ZFA:0000542 ! medial column (zebrafish) [Term] id: ZFA:0000525 name: intercalarium (zebrafish) namespace: zebrafish_anatomy def: "Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anteriolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0000525 xref: ZFIN:ZDB-ANAT-011113-448 is_a: UBERON:0003861 ! vertebral arch relationship: part_of UBERON:0001093 ! second cervical vertebra relationship: part_of ZFA:0000461 ! Weberian ossicle (zebrafish) [Term] id: ZFA:0000526 name: intermuscular bone (zebrafish) namespace: zebrafish_anatomy def: "Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only." [ZFIN:curator] synonym: "intermuscular bones" EXACT PLURAL [] xref: TAO:0000526 xref: ZFIN:ZDB-ANAT-011113-449 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: ZFA:0000527 name: pharyngobranchial bone (zebrafish) namespace: zebrafish_anatomy def: "The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial" EXACT [] synonym: "pharyngobranchials" EXACT [] xref: TAO:0000527 xref: ZFIN:ZDB-ANAT-011113-45 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0000528 name: interradialis (zebrafish) namespace: zebrafish_anatomy synonym: "interradiali" EXACT PLURAL [] xref: TAO:0000528 xref: ZFIN:ZDB-ANAT-011113-450 is_a: UBERON:0001630 ! muscle organ relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000530 name: lapillus (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0001102 def: "Otolith part of utricle." [ZFIN:ZDB-PUB-020403-4] synonym: "immature anterior otolith" RELATED [] synonym: "utricular otolith" EXACT [] synonym: "utriculith" EXACT [] xref: TAO:0000530 xref: ZFIN:ZDB-ANAT-011113-452 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: ZFA:0000532 name: lateral valvula cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Lateral division of the valvula cerebelli." [ZFIN:curator] synonym: "lateral division" EXACT [] synonym: "valvula cerebelli, pars lateralis" EXACT [] xref: TAO:0000532 xref: ZFIN:ZDB-ANAT-011113-454 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000603 ! valvula cerebelli (zebrafish) [Term] id: ZFA:0000534 name: lateral longitudinal fasciculus (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0000198 def: "The lateral longitudinal fascicule is an ascending bundle of axons. The LLF contains fibers of the auditory and mechanosensory systems which originate in the primary sensory brainstem nuclei and terminate in the torus semicircularis. The LLF lies dorsal to the superior reticular formation, adjacent to the ventral rhombencephalic commissure. The LLF becomes displaced more laterally as it approaches the torus semicircularis. The LLF is homologous to the mammalian lateral lemniscus." [ZFIN:ZDB-PUB-961014-1280] synonym: "LLF" RELATED [] synonym: "lateral longitundinal fasciculus" EXACT [] xref: TAO:0000534 xref: ZFIN:ZDB-ANAT-011113-456 is_a: ZFA:0000318 ! brainstem and spinal white matter (zebrafish) relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000536 name: lateral zone of dorsal telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which is laterally located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area dorsalis telencephali, zona lateralis" EXACT [] synonym: "lateral zone of D" EXACT [] synonym: "lateral zone of dorsal telencephalic area" EXACT [] xref: TAO:0000536 xref: ZFIN:ZDB-ANAT-011113-458 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of ZFA:0000505 ! dorsal telencephalon (zebrafish) [Term] id: ZFA:0000537 name: levator operculi (zebrafish) namespace: zebrafish_anatomy synonym: "levator operculae" EXACT [] xref: TAO:0000537 xref: ZFIN:ZDB-ANAT-011113-459 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0000540 name: magnocellular octaval nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "magnocellular octaval nuclei" EXACT PLURAL [] xref: TAO:0000540 xref: ZFIN:ZDB-ANAT-011113-461 is_a: ZFA:0000401 ! octaval nerve sensory nucleus (zebrafish) [Term] id: ZFA:0000541 name: marginal blastomere (zebrafish) namespace: zebrafish_anatomy def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim synonym: "marginal blastomeres" EXACT PLURAL [] xref: TAO:0000541 xref: ZFIN:ZDB-ANAT-011113-462 is_a: ZFA:0000093 ! blastomere (zebrafish) [Term] id: ZFA:0000542 name: medial column (zebrafish) namespace: zebrafish_anatomy synonym: "medial column of the reticular formation" EXACT [] synonym: "medial columns" EXACT PLURAL [] xref: TAO:0000542 xref: ZFIN:ZDB-ANAT-011113-463 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation [Term] id: ZFA:0000544 name: medial pterygiophores anal fin namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-465 [Term] id: ZFA:0000549 name: posttemporal (zebrafish) namespace: zebrafish_anatomy def: "Paired fin bone that attaches the pectoral girdle to the skull via two projections contacting the epiotic and intercalar bones, and carry the main laterosensory canal." [ZFIN:curator] synonym: "post-temporal " RELATED [] synonym: "postemporal" EXACT [] xref: TAO:0000549 xref: ZFIN:ZDB-ANAT-011113-47 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003110 ! otic region relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: ZFA:0000551 name: nucleus lateralis valvulae (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain nucleus in the tegmental region of rhombomere 1." [ZFIN:ZDB-PUB-100601-20] xref: TAO:0000551 xref: ZFIN:ZDB-ANAT-011113-471 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000552 name: nucleus ruber (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000552 xref: ZFIN:ZDB-ANAT-011113-472 is_a: ZFA:0005577 ! tegmental nucleus (zebrafish) relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: ZFA:0000555 name: opercular flap (zebrafish) namespace: zebrafish_anatomy synonym: "gill cover" EXACT [] synonym: "gill slit" RELATED [] synonym: "opercular apparatus" EXACT [] synonym: "operculum" EXACT [] xref: TAO:0000555 xref: ZFIN:ZDB-ANAT-011113-476 is_a: UBERON:0003102 ! surface structure [Term] id: ZFA:0000557 name: preural 1 vertebra (zebrafish) namespace: zebrafish_anatomy def: "Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra." [ZFIN:ZDB-PUB-011008-1] synonym: "penultimate vertebra" EXACT [] synonym: "preural centrum 1" EXACT [] synonym: "pu1" EXACT [] synonym: "second last vertebra" EXACT [] xref: TAO:0000557 xref: ZFIN:ZDB-ANAT-011113-479 is_a: ZFA:0000734 ! preural vertebra (zebrafish) [Term] id: ZFA:0000558 name: posterior macula (zebrafish) namespace: zebrafish_anatomy def: "Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "pm" EXACT [] synonym: "posterior sensory patch" EXACT [] synonym: "posteromedial macula" EXACT [] xref: TAO:0000558 xref: ZFIN:ZDB-ANAT-011113-48 is_a: UBERON:0000054 ! macula relationship: part_of ZFA:0001671 ! macula communis (zebrafish) [Term] id: ZFA:0000564 name: pelvic abductor profundus (zebrafish) namespace: zebrafish_anatomy synonym: "pelvic abductors profundus" EXACT PLURAL [] xref: TAO:0000564 xref: ZFIN:ZDB-ANAT-011113-485 is_a: UBERON:0006845 ! abductor muscle relationship: part_of UBERON:0007270 ! hind limb/fin musculature [Term] id: ZFA:0000571 name: presumptive telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the telencephalon." [ZFIN:curator] xref: TAO:0000571 xref: ZFIN:ZDB-ANAT-011113-497 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0007135 ! neural keel [Term] id: ZFA:0000573 name: internal cellular layer (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is the innermost layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "stratum cellulare internum bulbi olfactorii" EXACT [] xref: TAO:0000573 xref: ZFIN:ZDB-ANAT-011113-5 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: ZFA:0000576 name: pterotic (zebrafish) namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet." [ZFIN:curator] synonym: "autopterotic" EXACT [] xref: TAO:0000576 xref: ZFIN:ZDB-ANAT-011113-501 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003110 ! otic region relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0000578 name: ceratohyal bone (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly. The ceratohyal bone begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal." [ZFIN:curator] synonym: "anterior ceratohyal" EXACT [] synonym: "ceratohyal anterior" EXACT [] synonym: "rostral ceratohyal" EXACT [] xref: TAO:0000578 xref: ZFIN:ZDB-ANAT-011113-505 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001400 ! ceratohyal cartilage (zebrafish) relationship: part_of ZFA:0001402 ! ventral hyoid arch (zebrafish) [Term] id: ZFA:0000579 name: rostral mesencephalo-cerebellar tract (zebrafish) namespace: zebrafish_anatomy def: "Brainstem tract which carries cerebellar afferents from the pretectum and runs medial to the lateral longitudinal fascicle for a distance before turning dorsally to traverse the nucleus lateralis valvulae. Fuses with the caudal mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "anterior mesencephalo-cerebellar tract" EXACT [] xref: TAO:0000579 xref: ZFIN:ZDB-ANAT-011113-506 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002298 ! brainstem relationship: part_of ZFA:0000643 ! rostral cerebellar tract (zebrafish) [Term] id: ZFA:0000580 name: rostral preglomerular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Preglomerular nucleus which is the most rostrolaterally located of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "anterior preglomerular nucleus" EXACT [] synonym: "nucleus praeglomerulosus anterior" EXACT [] xref: TAO:0000580 xref: ZFIN:ZDB-ANAT-011113-507 is_a: ZFA:0001662 ! preglomerular nucleus (zebrafish) [Term] id: ZFA:0000581 name: rostral tuberal nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is the most anterior and lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "anterior tuberal nucleus" EXACT [] synonym: "nucleus tuberis anterior" EXACT [] xref: TAO:0000581 xref: ZFIN:ZDB-ANAT-011113-508 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000707 ! ventral hypothalamic zone (zebrafish) [Term] id: ZFA:0000582 name: saccus dorsalis (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000582 xref: ZFIN:ZDB-ANAT-011113-509 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001899 ! epithalamus [Term] id: ZFA:0000585 name: kinethmoid cartilage (zebrafish) namespace: zebrafish_anatomy def: "Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid." [ZFIN:curator] xref: TAO:0000585 xref: ZFIN:ZDB-ANAT-070928-115 is_a: UBERON:0003932 ! chondrocranium cartilage [Term] id: ZFA:0000586 name: preural 2 vertebra (zebrafish) namespace: zebrafish_anatomy def: "Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra." [ZFIN:ZDB-PUB-011008-1] synonym: "antepenultimate vertebra" EXACT [] synonym: "preural centrum 2" EXACT [] synonym: "pu2" EXACT [] synonym: "third last vertebra" EXACT [] xref: TAO:0000586 xref: ZFIN:ZDB-ANAT-011113-514 is_a: ZFA:0000734 ! preural vertebra (zebrafish) [Term] id: ZFA:0000587 name: sphenotic (zebrafish) namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anteriolateral process that borders the posterodorsal margin of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet." [ZFIN:curator] synonym: "autosphenotic" EXACT [] xref: TAO:0000587 xref: ZFIN:ZDB-ANAT-011113-515 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0006605 ! tectum synoticum relationship: develops_from ZFA:0001515 ! taenia marginalis posterior (zebrafish) relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003110 ! otic region [Term] id: ZFA:0000589 name: sulcus ypsiloniformis (zebrafish) namespace: zebrafish_anatomy def: "Anatomical line which separates the dorsal and medial zones of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000589 xref: ZFIN:ZDB-ANAT-011113-518 is_a: UBERON:0006846 ! groove relationship: part_of ZFA:0000505 ! dorsal telencephalon (zebrafish) [Term] id: ZFA:0000592 name: superficial pelvic adductor (zebrafish) namespace: zebrafish_anatomy synonym: "superficial pelvic adductors" EXACT PLURAL [] xref: TAO:0000592 xref: ZFIN:ZDB-ANAT-011113-520 is_a: UBERON:0000952 ! adductor muscle relationship: part_of UBERON:0007270 ! hind limb/fin musculature [Term] id: ZFA:0000593 name: superior reticular formation medial column (zebrafish) namespace: zebrafish_anatomy comment: There may be a cholinergic nucleus called the superior reticular nucleus rostral to the locus coeruleus. ZDB-PUB-040526-6 xref: TAO:0000593 xref: ZFIN:ZDB-ANAT-011113-521 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of ZFA:0000542 ! medial column (zebrafish) [Term] id: ZFA:0000594 name: supracleithrum (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:curator] synonym: "supracleithra" EXACT PLURAL [] xref: TAO:0000594 xref: ZFIN:ZDB-ANAT-011113-522 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: ZFA:0000596 name: supraorbital series namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-524 [Term] id: ZFA:0000597 name: telencephalic white matter (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter that is part of the telencephalon." [ZFIN:curator] synonym: "telencephalic tract/commissure" EXACT [] xref: TAO:0000597 xref: ZFIN:ZDB-ANAT-011113-525 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0001893 ! telencephalon [Term] id: ZFA:0000599 name: torus semicircularis (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the midbrain and develops from the alar plate. The torus semicircularis is located dorsal to the lateral tegmentum where it extends into the medial tectal ventricle and receives ascending sensory octavolateralis input." [ZFIN:curator] xref: TAO:0000599 xref: ZFIN:ZDB-ANAT-011113-527 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from ZFA:0001357 ! alar plate midbrain region (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0000601 name: pretectal periventricular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "periventricular pretectum" EXACT [] synonym: "pretectal periventricular nuclei" EXACT PLURAL [] xref: TAO:0000601 xref: ZFIN:ZDB-ANAT-011113-53 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0001944 ! pretectal region relationship: part_of ZFA:0000293 ! synencephalon (zebrafish) [Term] id: ZFA:0000602 name: uroneural (zebrafish) namespace: zebrafish_anatomy def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone." [TAO:curator] synonym: "uroneurals" EXACT PLURAL [] xref: TAO:0000602 xref: ZFIN:ZDB-ANAT-011113-530 is_a: UBERON:0003861 ! vertebral arch relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0000603 name: valvula cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "valvula cerebellum" EXACT PLURAL [] xref: TAO:0000603 xref: ZFIN:ZDB-ANAT-011113-531 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: ZFA:0000606 name: ventral oblique branchial muscle (zebrafish) namespace: zebrafish_anatomy synonym: "ventral oblique branchial muscles" EXACT PLURAL [] xref: TAO:0000606 xref: ZFIN:ZDB-ANAT-011113-534 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000607 name: ventral rhombencephalic commissure (zebrafish) namespace: zebrafish_anatomy def: "Brainstem commissure that intersects the medial longitudinal fasciculus." [ISBN:3764351209] xref: TAO:0000607 xref: ZFIN:ZDB-ANAT-011113-535 is_a: ZFA:0000318 ! brainstem and spinal white matter (zebrafish) [Term] id: ZFA:0000608 name: ventral transverse (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000608 xref: ZFIN:ZDB-ANAT-011113-536 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000609 name: ventrolateral nucleus (zebrafish) namespace: zebrafish_anatomy def: "Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to mechanoreception. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000609 xref: ZFIN:ZDB-ANAT-011113-537 is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of ZFA:0000599 ! torus semicircularis (zebrafish) [Term] id: ZFA:0000610 name: vertical myoseptum (zebrafish) namespace: zebrafish_anatomy def: "Connective tissue partitions developing between the myotomes." [ZFIN:ZDB-PUB-961014-576] synonym: "transverse myoseptum" EXACT [] xref: TAO:0000610 xref: ZFIN:ZDB-ANAT-011113-538 is_a: ZFA:0001089 ! myoseptum (zebrafish) [Term] id: ZFA:0000611 name: visceromotor column (zebrafish) namespace: zebrafish_anatomy def: "Collection of the visceromotor nuclei and their fiber tracts in the medulla oblongata." [ISBN:3540560130] xref: TAO:0000611 xref: ZFIN:ZDB-ANAT-011113-539 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000612 name: protractor hyoidei (zebrafish) namespace: zebrafish_anatomy def: "Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII." [TAO:curator] synonym: "protractors hyoidei" EXACT PLURAL [] xref: TAO:0000612 xref: ZFIN:ZDB-ANAT-011113-54 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0000614 name: abductor profundus (zebrafish) namespace: zebrafish_anatomy synonym: "abductors profundus" EXACT PLURAL [] xref: TAO:0000614 xref: ZFIN:ZDB-ANAT-011113-542 is_a: UBERON:0006845 ! abductor muscle relationship: part_of UBERON:0007269 ! fore limb/fin musculature [Term] id: ZFA:0000615 name: adductor arcus palatini (zebrafish) namespace: zebrafish_anatomy synonym: "adductors arcus palatini" EXACT PLURAL [] xref: TAO:0000615 xref: ZFIN:ZDB-ANAT-011113-543 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0000616 name: adductor profundus (zebrafish) namespace: zebrafish_anatomy synonym: "adductors profundus" EXACT PLURAL [] xref: TAO:0000616 xref: ZFIN:ZDB-ANAT-011113-544 is_a: UBERON:0000952 ! adductor muscle relationship: part_of UBERON:0007269 ! fore limb/fin musculature [Term] id: ZFA:0000617 name: anal erector (zebrafish) namespace: zebrafish_anatomy synonym: "anal erectors" EXACT PLURAL [] xref: TAO:0000617 xref: ZFIN:ZDB-ANAT-011113-545 is_a: ZFA:0005267 ! erector muscle (zebrafish) relationship: part_of ZFA:0001154 ! anal fin musculature (zebrafish) [Term] id: ZFA:0000618 name: ansulate commissure (zebrafish) namespace: zebrafish_anatomy def: "Brainstem commissure located immediately rostral to the interpeduncular nucleus. Many fibers in the tecto-bulbar tract cross the midline through the ansulate commissure. Referred to as the ventral tegmental commissure at embryonic stages, and is the only commissure to change names during development. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "Cans" EXACT [] synonym: "commissura ansulata" EXACT [] synonym: "ventral tegmental commissure" EXACT [] xref: TAO:0000618 xref: ZFIN:ZDB-ANAT-011113-546 is_a: ZFA:0000318 ! brainstem and spinal white matter (zebrafish) [Term] id: ZFA:0000622 name: barbel (zebrafish) namespace: zebrafish_anatomy def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [ZFIN:curator] synonym: "barble" EXACT [] xref: TAO:0000622 xref: ZFIN:ZDB-ANAT-011113-550 is_a: UBERON:0003102 ! surface structure relationship: develops_from ZFA:0005119 ! barbel primordium (zebrafish) relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0002199 ! integument [Term] id: ZFA:0000623 name: basipterygium (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:curator] synonym: "pelvic bone" EXACT [] xref: TAO:0000623 xref: ZFIN:ZDB-ANAT-011113-551 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001539 ! basipterygium cartilage (zebrafish) relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle [Term] id: ZFA:0000624 name: brachium conjunctivum namespace: zebrafish_anatomy is_obsolete: true comment: Term is being obsoleted because it cannot be anatomically identified in zebrafish. From Neuroanatomy of the Zebrafish Brain ISBN:3764351209. xref: TAO:0000624 xref: ZFIN:ZDB-ANAT-011113-552 [Term] id: ZFA:0000626 name: bulbo-spinal tract (zebrafish) namespace: zebrafish_anatomy def: "Brainstem and spinal tract which emerges medial to the caudal intermediate reticular formation and runs caudally along the medial edge of the inferior reticular formation. It is displaced laterally and associates with other tracts in the dorsal part of the funiculus lateralis immediately prior to reaching the spinal cord. The bulbo-spinal tract carries descending spinal projections. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "tractus bulbospinalis" EXACT [] xref: TAO:0000626 xref: ZFIN:ZDB-ANAT-011113-554 is_a: ZFA:0000318 ! brainstem and spinal white matter (zebrafish) [Term] id: ZFA:0000627 name: epihyal (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone that begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage." [ZFIN:curator] synonym: "caudal ceratohyal" EXACT [] synonym: "posterior ceratohyal" EXACT [] xref: TAO:0000627 xref: ZFIN:ZDB-ANAT-011113-555 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001400 ! ceratohyal cartilage (zebrafish) relationship: part_of ZFA:0001402 ! ventral hyoid arch (zebrafish) [Term] id: ZFA:0000628 name: caudal fin musculature (zebrafish) namespace: zebrafish_anatomy def: "Fin musculature that is part of the caudal fin." [ZFIN:ZDB-PUB-011008-1] xref: TAO:0000628 xref: ZFIN:ZDB-ANAT-011113-556 is_a: UBERON:0007271 ! limb/fin musculature relationship: part_of ZFA:0001058 ! caudal fin (zebrafish) [Term] id: ZFA:0000629 name: caudal motor nucleus (zebrafish) namespace: zebrafish_anatomy def: "Abducens motor nucleus which is located at the level of the intermediate reticular formation." [ZFIN:curator] synonym: "nVIc" EXACT [] synonym: "nucleus nervi abducentis, pars caudalis" EXACT [] xref: TAO:0000629 xref: ZFIN:ZDB-ANAT-011113-557 is_a: UBERON:0002682 ! abducens nucleus [Term] id: ZFA:0000630 name: caudal parvocellular preoptic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "caudal parvocellular preoptic nuclei" EXACT PLURAL [] synonym: "posterior parvocellular preoptic nucleus" EXACT [] xref: TAO:0000630 xref: ZFIN:ZDB-ANAT-011113-558 is_a: ZFA:0001680 ! parvocellular preoptic nucleus (zebrafish) relationship: part_of UBERON:0001928 ! preoptic area [Term] id: ZFA:0000633 name: caudal tuberculum (zebrafish) namespace: zebrafish_anatomy def: "Brain structure which is part of the diencephalon and is larger than the dorsal thalamus and ventral thalamus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "posterior tubercle" EXACT [] synonym: "posterior tuberculum" EXACT [] xref: TAO:0000633 xref: ZFIN:ZDB-ANAT-011113-560 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: ZFA:0000634 name: caudal hypothalamic zone (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure which forms most of the median tuberal portion of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: ZFIN:ZDB-ANAT-011113-561 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000392 ! median tuberal portion (zebrafish) [Term] id: ZFA:0000635 name: central pretectal nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "nucleus praetectalis centralis" EXACT [] xref: TAO:0000635 xref: ZFIN:ZDB-ANAT-011113-562 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000183 ! central pretectum (zebrafish) [Term] id: ZFA:0000636 name: cerebellar crest (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue composed of parallel fibers that originate at the granular eminence that overlays the rhombencephalic lateral line region. Also termed the molecular layer." [ISBN:3540560130] comment: Not sure how much of the molecular layer is cerebellar crest. synonym: "crista cerebellaris" EXACT [] synonym: "molecular layer" RELATED [] xref: TAO:0000636 xref: ZFIN:ZDB-ANAT-011113-563 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000291 ! medial octavolateralis nucleus (zebrafish) [Term] id: ZFA:0000637 name: claustrum cartilage (zebrafish) namespace: zebrafish_anatomy def: "Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum is bilaterally paired." [ZFIN:curator] xref: TAO:0000637 xref: ZFIN:ZDB-ANAT-011113-564 is_a: ZFA:0001457 ! postcranial axial cartilage (zebrafish) relationship: part_of ZFA:0000461 ! Weberian ossicle (zebrafish) [Term] id: ZFA:0000638 name: commissura rostral, pars dorsalis (zebrafish) namespace: zebrafish_anatomy def: "Anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "commissura anterior, pars dorsalis" EXACT [] xref: TAO:0000638 xref: ZFIN:ZDB-ANAT-011113-565 is_a: UBERON:0000935 ! anterior commissure [Term] id: ZFA:0000639 name: commissure of the secondary gustatory nucleus (zebrafish) namespace: zebrafish_anatomy def: "Cerebellar commissure that runs between the bulbo-spinal tract and the vestibulo-spinal tract." [ISBN:3764351209] synonym: "commissura nucleorum gustatoriorum secundariorum" EXACT [] synonym: "commissure of the secondary gustatory nuclei" RELATED [] xref: TAO:0000639 xref: ZFIN:ZDB-ANAT-011113-566 is_a: UBERON:0002317 ! white matter of cerebellum [Term] id: ZFA:0000642 name: decussation of the medial octavolateralis nucleus (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000642 xref: ZFIN:ZDB-ANAT-011113-569 is_a: ZFA:0000318 ! brainstem and spinal white matter (zebrafish) relationship: part_of ZFA:0000381 ! lateral line sensory nucleus (zebrafish) [Term] id: ZFA:0000643 name: rostral cerebellar tract (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter comprised of the rostral mesencephalo-cerebellar and caudal mesencephalo-cerebellar tracts. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "anterior cerebellar tract" EXACT [] synonym: "tractus cerebellaris anterior" EXACT [] xref: TAO:0000643 xref: ZFIN:ZDB-ANAT-011113-57 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002037 ! cerebellum [Term] id: ZFA:0000644 name: dental plate namespace: zebrafish_anatomy is_obsolete: true comment: \"Dermal tooth plates are variable structures. During upper pharyngeal arch development in Astatotilapia elegans, dermal tooth plates are formed entirely of fused tooth pedicels (Huys-seune, 1983). However, in lower pharyngeals of the same species, teeth attach to a preexisting plate (Vandewalle et al., 1994). In other teleosts (e.g., cyprinid fifth ceratobranchials), there is no tooth plate per se, because tooth pedicels do not fuse to one another, but each fuses to the endochondral bone separately (see Gosline, 1985).\"nConsider ZFA:0001239 ceratobranchial 5 bone or ZFA:0000694 ceratobranchial 5 tooth synonym: "dental plates" EXACT PLURAL [] xref: TAO:0000644 xref: ZFIN:ZDB-ANAT-011113-570 [Term] id: ZFA:0000645 name: descending octaval nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "nucleus octavus descendens" EXACT [] xref: TAO:0000645 xref: ZFIN:ZDB-ANAT-011113-571 is_a: ZFA:0000401 ! octaval nerve sensory nucleus (zebrafish) [Term] id: ZFA:0000646 name: anal fin distal radial (zebrafish) namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] synonym: "anal fin distal radials" EXACT PLURAL [] xref: TAO:0000646 xref: ZFIN:ZDB-ANAT-011113-572 is_a: ZFA:0001646 ! anal fin radial (zebrafish) relationship: part_of ZFA:0001420 ! anal fin pterygiophore (zebrafish) [Term] id: ZFA:0000647 name: dorsal caudal thalamic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, dorsal to the central caudal thalamic nucleus." [ZFIN:curator] synonym: "dorsal posterior thalamic nucleus" EXACT [] synonym: "nucleus dorsalis posterior thalami" EXACT [] xref: TAO:0000647 xref: ZFIN:ZDB-ANAT-011113-573 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:0004703 ! dorsal thalamus [Term] id: ZFA:0000648 name: dorsal fin musculature (zebrafish) namespace: zebrafish_anatomy def: "Musculature that is part of the dorsal fin." [ZFIN:curator] xref: TAO:0000648 xref: ZFIN:ZDB-ANAT-011113-574 is_a: UBERON:0007271 ! limb/fin musculature relationship: part_of UBERON:0003097 ! dorsal fin [Term] id: ZFA:0000651 name: dorsal pelvic arrector (zebrafish) namespace: zebrafish_anatomy synonym: "dorsal pelvic arrectors" EXACT PLURAL [] xref: TAO:0000651 xref: ZFIN:ZDB-ANAT-011113-577 is_a: ZFA:0005275 ! arrector muscle (zebrafish) relationship: part_of UBERON:0007270 ! hind limb/fin musculature [Term] id: ZFA:0000654 name: rostral motor nucleus (zebrafish) namespace: zebrafish_anatomy def: "Abducens motor nucleus which is located at the level of the superior reticular formation." [ZFIN:curator] xref: TAO:0000654 xref: ZFIN:ZDB-ANAT-011113-58 is_a: UBERON:0002682 ! abducens nucleus [Term] id: ZFA:0000655 name: dorsomedial optic tract (zebrafish) namespace: zebrafish_anatomy synonym: "tractus opticus dorsomedialis" EXACT [] xref: TAO:0000655 xref: ZFIN:ZDB-ANAT-011113-580 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001908 ! optic tract [Term] id: ZFA:0000656 name: ectopterygoid (zebrafish) namespace: zebrafish_anatomy def: "The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate." [ZFIN:curator] synonym: "ectopterygoids" EXACT PLURAL [] xref: TAO:0000656 xref: ZFIN:ZDB-ANAT-011113-581 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0000657 name: entopterygoid (zebrafish) namespace: zebrafish_anatomy def: "The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL)." [ZFIN:curator] synonym: "endopterygoid" EXACT [] synonym: "mesopterygoid" EXACT [] xref: TAO:0000657 xref: ZFIN:ZDB-ANAT-011113-582 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0000658 name: epibranchial bone (zebrafish) namespace: zebrafish_anatomy def: "Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens." [ZFIN:curator] synonym: "epibranchial bones" EXACT PLURAL [] xref: TAO:0000658 xref: ZFIN:ZDB-ANAT-011113-583 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001527 ! epibranchial cartilage (zebrafish) relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0000660 name: epural (zebrafish) namespace: zebrafish_anatomy def: "A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone." [TAO:curator] xref: TAO:0000660 xref: ZFIN:ZDB-ANAT-011113-585 is_a: UBERON:0001076 ! spinous process of vertebra relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0000662 name: external pharyngoclavicularis (zebrafish) namespace: zebrafish_anatomy synonym: "external pharyngoclavicularae" EXACT PLURAL [] xref: TAO:0000662 xref: ZFIN:ZDB-ANAT-011113-587 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: ZFA:0000663 name: extrascapula (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0001413 def: "Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones." [TAO:curator] synonym: "supratemporal" EXACT [] synonym: "tabular" EXACT [] xref: TAO:0000663 xref: ZFIN:ZDB-ANAT-011113-588 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: ZFA:0000666 name: filamental artery (zebrafish) namespace: zebrafish_anatomy def: "Artery of the gill filament." [ZFIN:curator] synonym: "filamental arteries" EXACT PLURAL [] xref: TAO:0000666 xref: ZFIN:ZDB-ANAT-011113-590 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0007303 ! pharyngeal vasculature relationship: part_of UBERON:0009120 ! gill filament [Term] id: ZFA:0000672 name: hyomandibula (zebrafish) namespace: zebrafish_anatomy def: "The hyomandibula is the large, dorsal-most member of the hyoid arch. It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints. A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle." [ZFIN:curator] synonym: "hyomandibular" EXACT [] xref: TAO:0000672 xref: ZFIN:ZDB-ANAT-011113-598 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage (zebrafish) relationship: part_of ZFA:0001401 ! dorsal hyoid arch (zebrafish) [Term] id: ZFA:0000673 name: hypobranchial artery (zebrafish) namespace: zebrafish_anatomy def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart." [ZFIN:ZDB-PUB-010205-5] synonym: "HA" EXACT [] xref: TAO:0000673 xref: ZFIN:ZDB-ANAT-011113-599 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003118 ! aortic arch 1 [Term] id: ZFA:0000674 name: interopercle (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone." [ZFIN:curator] synonym: "interopercles" EXACT PLURAL [] xref: TAO:0000674 xref: ZFIN:ZDB-ANAT-011113-6 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of ZFA:0000555 ! opercular flap (zebrafish) relationship: part_of ZFA:0001401 ! dorsal hyoid arch (zebrafish) [Term] id: ZFA:0000676 name: sagitta (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0001103 def: "Otolith that is part of the sacculus." [ZFIN:ZDB-PUB-02040304] synonym: "immature posterior otolith" RELATED [] synonym: "saccular otolith" EXACT [] synonym: "sacculith" EXACT [] xref: TAO:0000676 xref: ZFIN:ZDB-ANAT-011113-61 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: ZFA:0000677 name: segmental intercostal artery (zebrafish) namespace: zebrafish_anatomy synonym: "segmental intercostal arteries" EXACT PLURAL [] xref: TAO:0000677 xref: ZFIN:ZDB-ANAT-011113-62 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0000678 name: hair cell anterior macula (zebrafish) namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "sensory hair cells anterior macula" EXACT PLURAL [] xref: TAO:0000678 xref: ZFIN:ZDB-ANAT-011113-63 is_a: CL:0000855 ! sensory hair cell relationship: develops_from ZFA:0001098 ! immature hair cell anterior macula (zebrafish) relationship: part_of ZFA:0000168 ! anterior macula (zebrafish) [Term] id: ZFA:0000683 name: subcommissural organ (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure and contains ciliated neurosecretory ependymal cells. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "SCO" EXACT [] xref: TAO:0000683 xref: ZFIN:ZDB-ANAT-011113-69 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000293 ! synencephalon (zebrafish) [Term] id: ZFA:0000685 name: superficial abductor (zebrafish) namespace: zebrafish_anatomy synonym: "abductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "superficial abductors" EXACT PLURAL [] xref: TAO:0000685 xref: ZFIN:ZDB-ANAT-011113-70 is_a: UBERON:0006845 ! abductor muscle relationship: part_of UBERON:0007269 ! fore limb/fin musculature [Term] id: ZFA:0000687 name: superficial pretectum (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is the superficial part of the pretectum and is embedded in the optic tract." [ZFIN:curator] xref: TAO:0000687 xref: ZFIN:ZDB-ANAT-011113-72 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001944 ! pretectal region [Term] id: ZFA:0000689 name: supracommissural nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Periventricular nucleus which is contiguous with the caudal part of the dorsal nucleus of the ventral telencephalon and the postcommissural nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus supracommissuralis" EXACT [] synonym: "supracommissural nucleus of V" EXACT [] xref: TAO:0000689 xref: ZFIN:ZDB-ANAT-011113-74 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0000690 name: supraoptic commissure (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000690 xref: ZFIN:ZDB-ANAT-011113-75 is_a: UBERON:0003931 ! diencephalic white matter [Term] id: ZFA:0000691 name: supraorbital bone (zebrafish) namespace: zebrafish_anatomy def: "Paired dermal bones that form the anterodorsal margin of the orbit." [ZFIN:curator] synonym: "supraorbital bones" EXACT PLURAL [] xref: TAO:0000691 xref: ZFIN:ZDB-ANAT-011113-76 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0001697 ! orbit relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0000692 name: symplectic (zebrafish) namespace: zebrafish_anatomy def: "The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate." [ZFIN:curator] synonym: "symplectics" EXACT PLURAL [] xref: TAO:0000692 xref: ZFIN:ZDB-ANAT-011113-77 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage (zebrafish) relationship: part_of ZFA:0001401 ! dorsal hyoid arch (zebrafish) [Term] id: ZFA:0000693 name: tangential nucleus (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000693 xref: ZFIN:ZDB-ANAT-011113-78 is_a: ZFA:0000401 ! octaval nerve sensory nucleus (zebrafish) [Term] id: ZFA:0000695 name: labial cavity (zebrafish) namespace: zebrafish_anatomy def: "The anatomical space located between the lips and the oral valves." [ZFIN:curator] synonym: "labial cavities" EXACT PLURAL [] xref: TAO:0000695 xref: ZFIN:ZDB-ANAT-011113-8 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001007 ! digestive system [Term] id: ZFA:0000698 name: tripus (zebrafish) namespace: zebrafish_anatomy def: "The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swim bladder." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0000698 xref: ZFIN:ZDB-ANAT-011113-82 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007842 ! membrane bone relationship: part_of ZFA:0000461 ! Weberian ossicle (zebrafish) relationship: part_of ZFA:0001169 ! vertebra 3 (zebrafish) [Term] id: ZFA:0000699 name: ural ossification namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-83 [Term] id: ZFA:0000701 name: ventral arrector (zebrafish) namespace: zebrafish_anatomy def: "Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke." [ZFIN:ZDB-PUB-050920-7] comment: Acts as antagonist to the dorsal arrector. synonym: "arrector ventralis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "ventral arrectors" EXACT PLURAL [] xref: TAO:0000701 xref: ZFIN:ZDB-ANAT-011113-85 is_a: ZFA:0005275 ! arrector muscle (zebrafish) relationship: part_of UBERON:0007269 ! fore limb/fin musculature [Term] id: ZFA:0000703 name: ventral motor nucleus trigeminal nerve (zebrafish) namespace: zebrafish_anatomy def: "Trigeminal motor nucleus that is located at the ventrolateral edge of the lateral longitudinal fascicle." [ISBN:3764351209] xref: TAO:0000703 xref: ZFIN:ZDB-ANAT-011113-87 is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve [Term] id: ZFA:0000704 name: ventral pelvic arrector (zebrafish) namespace: zebrafish_anatomy synonym: "ventral pelvic arrectors" EXACT PLURAL [] xref: TAO:0000704 xref: ZFIN:ZDB-ANAT-011113-88 is_a: ZFA:0005275 ! arrector muscle (zebrafish) relationship: part_of UBERON:0007270 ! hind limb/fin musculature [Term] id: ZFA:0000707 name: ventral hypothalamic zone (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure which is the ventral region of the median tuberal portion of the hypothalamus and is the most rostral region of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000707 xref: ZFIN:ZDB-ANAT-011113-90 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000392 ! median tuberal portion (zebrafish) [Term] id: ZFA:0000708 name: ventrolateral optic tract (zebrafish) namespace: zebrafish_anatomy synonym: "ventrolateral optic tracts" EXACT PLURAL [] xref: TAO:0000708 xref: ZFIN:ZDB-ANAT-011113-91 is_a: UBERON:0003931 ! diencephalic white matter relationship: part_of UBERON:0001908 ! optic tract [Term] id: ZFA:0000710 name: viscerosensory commissural nucleus of Cajal (zebrafish) namespace: zebrafish_anatomy synonym: "commissural nucleus of Cajal" EXACT [] synonym: "nucleus commissuralis Cajal" EXACT [] xref: TAO:0000710 xref: ZFIN:ZDB-ANAT-011113-93 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000711 name: DEL (zebrafish) namespace: zebrafish_anatomy def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast." [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT PLURAL [] synonym: "deep cell layer" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000711 xref: ZFIN:ZDB-ANAT-011113-94 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from ZFA:0001473 ! deep blastomere (zebrafish) relationship: part_of UBERON:0004750 ! blastoderm [Term] id: ZFA:0000712 name: I-YSL (zebrafish) namespace: zebrafish_anatomy def: "The portion of the YSL that lies deep to the blastoderm during epiboly." [ZFIN:ZDB-PUB-961014-576] synonym: "internal yolk syncytial layer" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000712 xref: ZFIN:ZDB-ANAT-011113-95 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000088 ! YSL (zebrafish) [Term] id: ZFA:0000714 name: accessory pretectal nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "APN" EXACT [] synonym: "nucleus praetectalis accessorius" EXACT [] xref: TAO:0000714 xref: ZFIN:ZDB-ANAT-011113-97 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000183 ! central pretectum (zebrafish) [Term] id: ZFA:0000715 name: adductor hyohyoid (zebrafish) namespace: zebrafish_anatomy synonym: "adductors hyohyoid" EXACT PLURAL [] xref: TAO:0000715 xref: ZFIN:ZDB-ANAT-011113-98 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0000716 name: afferent branchial artery (zebrafish) namespace: zebrafish_anatomy def: "Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch." [ZFIN:ZDB-PUB-010205-5] synonym: "ABA" EXACT [] xref: TAO:0000716 xref: ZFIN:ZDB-ANAT-011113-99 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0002535 ! gill relationship: part_of UBERON:0007303 ! pharyngeal vasculature [Term] id: ZFA:0000717 name: apical ectodermal ridge median fin fold (zebrafish) namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the median fin fold." [ZFIN:curator] xref: TAO:0000717 xref: ZFIN:ZDB-ANAT-020309-1 is_a: UBERON:0004356 ! apical ectodermal ridge relationship: part_of ZFA:0000040 ! median fin fold (zebrafish) [Term] id: ZFA:0000718 name: epaxial region somite 27 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000718 xref: ZFIN:ZDB-ANAT-020309-10 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000931 ! myotome somite 27 (zebrafish) [Term] id: ZFA:0000719 name: slow muscle cell somite 21 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 21" EXACT PLURAL [] xref: TAO:0000719 xref: ZFIN:ZDB-ANAT-020309-100 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000929 ! myotome somite 21 (zebrafish) [Term] id: ZFA:0000720 name: slow muscle cell somite 24 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 24" EXACT PLURAL [] xref: TAO:0000720 xref: ZFIN:ZDB-ANAT-020309-101 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000930 ! myotome somite 24 (zebrafish) [Term] id: ZFA:0000721 name: slow muscle cell somite 27 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 27" EXACT PLURAL [] xref: TAO:0000721 xref: ZFIN:ZDB-ANAT-020309-102 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000931 ! myotome somite 27 (zebrafish) [Term] id: ZFA:0000722 name: slow muscle cell somite 3 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 3" EXACT PLURAL [] xref: TAO:0000722 xref: ZFIN:ZDB-ANAT-020309-103 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000932 ! myotome somite 3 (zebrafish) [Term] id: ZFA:0000723 name: slow muscle cell somite 5 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 5" EXACT PLURAL [] xref: TAO:0000723 xref: ZFIN:ZDB-ANAT-020309-104 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000933 ! myotome somite 5 (zebrafish) [Term] id: ZFA:0000724 name: slow muscle cell somite 8 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 8" EXACT PLURAL [] xref: TAO:0000724 xref: ZFIN:ZDB-ANAT-020309-105 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000934 ! myotome somite 8 (zebrafish) [Term] id: ZFA:0000725 name: somite 11 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000725 xref: ZFIN:ZDB-ANAT-020309-106 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000726 name: somite 14 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000726 xref: ZFIN:ZDB-ANAT-020309-107 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000727 name: somite 17 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000727 xref: ZFIN:ZDB-ANAT-020309-108 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000728 name: somite 2 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000728 xref: ZFIN:ZDB-ANAT-020309-109 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000729 name: epaxial region somite 3 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000729 xref: ZFIN:ZDB-ANAT-020309-11 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000932 ! myotome somite 3 (zebrafish) [Term] id: ZFA:0000730 name: somite 23 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000730 xref: ZFIN:ZDB-ANAT-020309-110 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000731 name: somite 27 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000731 xref: ZFIN:ZDB-ANAT-020309-111 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000732 name: somite 3 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000732 xref: ZFIN:ZDB-ANAT-020309-112 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000733 name: somite 7 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000733 xref: ZFIN:ZDB-ANAT-020309-113 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000734 name: preural vertebra (zebrafish) namespace: zebrafish_anatomy def: "Vertebra which are the three most posterior vertebra supporting the caudal fin." [ZFIN:curator] synonym: "caudal fin vertebra" EXACT [] synonym: "specialized centra/vertebrae" EXACT PLURAL [] xref: TAO:0000734 xref: ZFIN:ZDB-ANAT-020309-114 is_a: UBERON:0001095 ! caudal vertebra relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0000735 name: hemal postzygapophysis (zebrafish) namespace: zebrafish_anatomy def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [ZFIN:curator] synonym: "haemal postzygapophysis" EXACT [] synonym: "hemal postzygapophyses" EXACT PLURAL [] synonym: "hemal postzygopophysis" EXACT [] xref: TAO:0000735 xref: ZFIN:ZDB-ANAT-060331-4 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0006065 ! hemal arch [Term] id: ZFA:0000739 name: epaxial region somite 11 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000739 xref: ZFIN:ZDB-ANAT-020309-119 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000801 ! myotome somite 11 (zebrafish) [Term] id: ZFA:0000740 name: epaxial region somite 5 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000740 xref: ZFIN:ZDB-ANAT-020309-12 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000933 ! myotome somite 5 (zebrafish) [Term] id: ZFA:0000741 name: epaxial region somite 14 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000741 xref: ZFIN:ZDB-ANAT-020309-120 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000044 ! myotome somite 14 (zebrafish) [Term] id: ZFA:0000742 name: epaxial region somite 17 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000742 xref: ZFIN:ZDB-ANAT-020309-121 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001015 ! myotome somite 17 (zebrafish) [Term] id: ZFA:0000743 name: epaxial region somite 2 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000743 xref: ZFIN:ZDB-ANAT-020309-122 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001016 ! myotome somite 2 (zebrafish) [Term] id: ZFA:0000744 name: epaxial region somite 22 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000744 xref: ZFIN:ZDB-ANAT-020309-123 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001017 ! myotome somite 22 (zebrafish) [Term] id: ZFA:0000745 name: epaxial region somite 25 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000745 xref: ZFIN:ZDB-ANAT-020309-124 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001018 ! myotome somite 25 (zebrafish) [Term] id: ZFA:0000746 name: epaxial region somite 28 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000746 xref: ZFIN:ZDB-ANAT-020309-125 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001019 ! myotome somite 28 (zebrafish) [Term] id: ZFA:0000747 name: epaxial region somite 30 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000747 xref: ZFIN:ZDB-ANAT-020309-126 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001020 ! myotome somite 30 (zebrafish) [Term] id: ZFA:0000748 name: epaxial region somite 6 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000748 xref: ZFIN:ZDB-ANAT-020309-127 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001021 ! myotome somite 6 (zebrafish) [Term] id: ZFA:0000749 name: epaxial region somite 9 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000749 xref: ZFIN:ZDB-ANAT-020309-128 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001022 ! myotome somite 9 (zebrafish) [Term] id: ZFA:0000750 name: fast muscle cell somite 10 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 10" EXACT PLURAL [] xref: TAO:0000750 xref: ZFIN:ZDB-ANAT-020309-129 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001013 ! myotome somite 10 (zebrafish) [Term] id: ZFA:0000751 name: epaxial region somite 8 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000751 xref: ZFIN:ZDB-ANAT-020309-13 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000934 ! myotome somite 8 (zebrafish) [Term] id: ZFA:0000752 name: fast muscle cell somite 13 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 13" EXACT PLURAL [] xref: TAO:0000752 xref: ZFIN:ZDB-ANAT-020309-130 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001014 ! myotome somite 13 (zebrafish) [Term] id: ZFA:0000753 name: fast muscle cell somite 16 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 16" EXACT PLURAL [] xref: TAO:0000753 xref: ZFIN:ZDB-ANAT-020309-131 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000927 ! myotome somite 16 (zebrafish) [Term] id: ZFA:0000754 name: fast muscle cell somite 19 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 19" EXACT PLURAL [] xref: TAO:0000754 xref: ZFIN:ZDB-ANAT-020309-132 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000928 ! myotome somite 19 (zebrafish) [Term] id: ZFA:0000755 name: fast muscle cell somite 21 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 21" EXACT PLURAL [] xref: TAO:0000755 xref: ZFIN:ZDB-ANAT-020309-133 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000929 ! myotome somite 21 (zebrafish) [Term] id: ZFA:0000756 name: fast muscle cell somite 24 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 24" EXACT PLURAL [] xref: TAO:0000756 xref: ZFIN:ZDB-ANAT-020309-134 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000930 ! myotome somite 24 (zebrafish) [Term] id: ZFA:0000757 name: fast muscle cell somite 27 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 27" EXACT PLURAL [] xref: TAO:0000757 xref: ZFIN:ZDB-ANAT-020309-135 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000931 ! myotome somite 27 (zebrafish) [Term] id: ZFA:0000758 name: fast muscle cell somite 3 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 3" EXACT PLURAL [] xref: TAO:0000758 xref: ZFIN:ZDB-ANAT-020309-136 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000932 ! myotome somite 3 (zebrafish) [Term] id: ZFA:0000759 name: fast muscle cell somite 5 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 5" EXACT PLURAL [] xref: TAO:0000759 xref: ZFIN:ZDB-ANAT-020309-137 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000933 ! myotome somite 5 (zebrafish) [Term] id: ZFA:0000760 name: fast muscle cell somite 8 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 8" EXACT PLURAL [] xref: TAO:0000760 xref: ZFIN:ZDB-ANAT-020309-138 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000934 ! myotome somite 8 (zebrafish) [Term] id: ZFA:0000761 name: basal plate midbrain region (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ISBN:0444517383, ZFIN:ZDB-PUB-961014-576] synonym: "floor plate midbrain" RELATED [] synonym: "floorplate midbrain" RELATED [] xref: TAO:0000761 xref: ZFIN:ZDB-ANAT-020309-139 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0007039 ! midbrain neural tube (zebrafish) [Term] id: ZFA:0000766 name: granular layer valvula cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is part of the valvula cerebelli and consists largely of axons and dendrites." [ZFIN:curator] xref: TAO:0000766 xref: ZFIN:ZDB-ANAT-020309-143 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000603 ! valvula cerebelli (zebrafish) [Term] id: ZFA:0000767 name: hypaxial region somite 11 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000767 xref: ZFIN:ZDB-ANAT-020309-144 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000801 ! myotome somite 11 (zebrafish) [Term] id: ZFA:0000768 name: hypaxial region somite 14 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000768 xref: ZFIN:ZDB-ANAT-020309-145 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000044 ! myotome somite 14 (zebrafish) [Term] id: ZFA:0000769 name: hypaxial region somite 17 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000769 xref: ZFIN:ZDB-ANAT-020309-146 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001015 ! myotome somite 17 (zebrafish) [Term] id: ZFA:0000770 name: hypaxial region somite 2 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000770 xref: ZFIN:ZDB-ANAT-020309-147 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001016 ! myotome somite 2 (zebrafish) [Term] id: ZFA:0000771 name: hypaxial region somite 22 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000771 xref: ZFIN:ZDB-ANAT-020309-148 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001017 ! myotome somite 22 (zebrafish) [Term] id: ZFA:0000772 name: hypaxial region somite 25 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000772 xref: ZFIN:ZDB-ANAT-020309-149 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001018 ! myotome somite 25 (zebrafish) [Term] id: ZFA:0000773 name: fast muscle cell somite 12 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 12" EXACT PLURAL [] xref: TAO:0000773 xref: ZFIN:ZDB-ANAT-020309-15 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000926 ! myotome somite 12 (zebrafish) [Term] id: ZFA:0000774 name: hypaxial region somite 28 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000774 xref: ZFIN:ZDB-ANAT-020309-150 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001019 ! myotome somite 28 (zebrafish) [Term] id: ZFA:0000775 name: hypaxial region somite 30 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000775 xref: ZFIN:ZDB-ANAT-020309-151 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001020 ! myotome somite 30 (zebrafish) [Term] id: ZFA:0000776 name: hypaxial region somite 6 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000776 xref: ZFIN:ZDB-ANAT-020309-152 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001021 ! myotome somite 6 (zebrafish) [Term] id: ZFA:0000777 name: hypaxial region somite 9 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000777 xref: ZFIN:ZDB-ANAT-020309-153 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001022 ! myotome somite 9 (zebrafish) [Term] id: ZFA:0000779 name: lateral forebrain bundle telencephalon (zebrafish) namespace: zebrafish_anatomy synonym: "lateral forebrain bundles telencephalon" EXACT PLURAL [] xref: TAO:0000779 xref: ZFIN:ZDB-ANAT-020309-155 is_a: ZFA:0000597 ! telencephalic white matter (zebrafish) relationship: part_of ZFA:0007012 ! lateral forebrain bundle (zebrafish) [Term] id: ZFA:0000784 name: fast muscle cell somite 15 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 15" EXACT PLURAL [] xref: TAO:0000784 xref: ZFIN:ZDB-ANAT-020309-16 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000802 ! myotome somite 15 (zebrafish) [Term] id: ZFA:0000786 name: medial migration pathway mesenchyme (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000786 xref: ZFIN:ZDB-ANAT-020309-161 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0007214 ! mesenchyme derived from trunk neural crest [Term] id: ZFA:0000788 name: mesenchyme dorsal fin (zebrafish) namespace: zebrafish_anatomy def: "Mesenchyme part of dorsal fin." [ZFIN:curator] xref: TAO:0000788 xref: ZFIN:ZDB-ANAT-020309-163 is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0003097 ! dorsal fin [Term] id: ZFA:0000789 name: mesoderm pectoral fin bud (zebrafish) namespace: zebrafish_anatomy def: "Mesoderm that is part of the pectoral fin bud." [ZFIN:curator] synonym: "mesoderm pectoral fin buds" EXACT PLURAL [] xref: TAO:0000789 xref: ZFIN:ZDB-ANAT-020309-164 is_a: UBERON:0000926 ! mesoderm relationship: part_of UBERON:0005419 ! forelimb/pectoral fin bud [Term] id: ZFA:0000790 name: muscle pioneer somite 10 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 10" EXACT PLURAL [] xref: TAO:0000790 xref: ZFIN:ZDB-ANAT-020309-165 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0001047 ! slow muscle cell somite 10 (zebrafish) [Term] id: ZFA:0000791 name: muscle pioneer somite 13 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 13" EXACT PLURAL [] xref: TAO:0000791 xref: ZFIN:ZDB-ANAT-020309-166 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0001048 ! slow muscle cell somite 13 (zebrafish) [Term] id: ZFA:0000792 name: muscle pioneer somite 16 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 16" EXACT PLURAL [] xref: TAO:0000792 xref: ZFIN:ZDB-ANAT-020309-167 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0001049 ! slow muscle cell somite 16 (zebrafish) [Term] id: ZFA:0000793 name: muscle pioneer somite 19 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 19" EXACT PLURAL [] xref: TAO:0000793 xref: ZFIN:ZDB-ANAT-020309-168 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0001050 ! slow muscle cell somite 19 (zebrafish) [Term] id: ZFA:0000794 name: muscle pioneer somite 22 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 22" EXACT PLURAL [] xref: TAO:0000794 xref: ZFIN:ZDB-ANAT-020309-169 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000844 ! slow muscle cell somite 22 (zebrafish) [Term] id: ZFA:0000795 name: fast muscle cell somite 18 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 18" EXACT PLURAL [] xref: TAO:0000795 xref: ZFIN:ZDB-ANAT-020309-17 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000803 ! myotome somite 18 (zebrafish) [Term] id: ZFA:0000796 name: muscle pioneer somite 25 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 25" EXACT PLURAL [] xref: TAO:0000796 xref: ZFIN:ZDB-ANAT-020309-170 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000845 ! slow muscle cell somite 25 (zebrafish) [Term] id: ZFA:0000797 name: muscle pioneer somite 28 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 28" EXACT PLURAL [] xref: TAO:0000797 xref: ZFIN:ZDB-ANAT-020309-171 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000846 ! slow muscle cell somite 28 (zebrafish) [Term] id: ZFA:0000798 name: muscle pioneer somite 30 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 30" EXACT PLURAL [] xref: TAO:0000798 xref: ZFIN:ZDB-ANAT-020309-172 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000847 ! slow muscle cell somite 30 (zebrafish) [Term] id: ZFA:0000799 name: muscle pioneer somite 6 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 6" EXACT PLURAL [] xref: TAO:0000799 xref: ZFIN:ZDB-ANAT-020309-173 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000848 ! slow muscle cell somite 6 (zebrafish) [Term] id: ZFA:0000800 name: muscle pioneer somite 9 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 9" EXACT PLURAL [] xref: TAO:0000800 xref: ZFIN:ZDB-ANAT-020309-174 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000850 ! slow muscle cell somite 9 (zebrafish) [Term] id: ZFA:0000801 name: myotome somite 11 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000801 xref: ZFIN:ZDB-ANAT-020309-175 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000725 ! somite 11 (zebrafish) [Term] id: ZFA:0000802 name: myotome somite 15 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000802 xref: ZFIN:ZDB-ANAT-020309-176 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000852 ! somite 15 (zebrafish) [Term] id: ZFA:0000803 name: myotome somite 18 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000803 xref: ZFIN:ZDB-ANAT-020309-177 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000853 ! somite 18 (zebrafish) [Term] id: ZFA:0000804 name: myotome somite 20 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000804 xref: ZFIN:ZDB-ANAT-020309-178 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000156 ! somite 20 (zebrafish) [Term] id: ZFA:0000805 name: myotome somite 23 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000805 xref: ZFIN:ZDB-ANAT-020309-179 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000730 ! somite 23 (zebrafish) [Term] id: ZFA:0000806 name: fast muscle cell somite 20 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 20" EXACT PLURAL [] xref: TAO:0000806 xref: ZFIN:ZDB-ANAT-020309-18 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000804 ! myotome somite 20 (zebrafish) [Term] id: ZFA:0000807 name: myotome somite 26 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000807 xref: ZFIN:ZDB-ANAT-020309-180 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000074 ! somite 26 (zebrafish) [Term] id: ZFA:0000808 name: myotome somite 29 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000808 xref: ZFIN:ZDB-ANAT-020309-181 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000981 ! somite 29 (zebrafish) [Term] id: ZFA:0000809 name: myotome somite 4 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000809 xref: ZFIN:ZDB-ANAT-020309-182 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000857 ! somite 4 (zebrafish) [Term] id: ZFA:0000810 name: myotome somite 7 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim xref: TAO:0000810 xref: ZFIN:ZDB-ANAT-020309-183 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000733 ! somite 7 (zebrafish) [Term] id: ZFA:0000813 name: infraorbital lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast infraorbital" EXACT [] synonym: "neuromasts infraorbital" EXACT PLURAL [] xref: TAO:0000813 xref: ZFIN:ZDB-ANAT-020309-186 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003094 ! infraorbital lateral line [Term] id: ZFA:0000814 name: opercular lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast opercular" EXACT [] synonym: "neuromasts opercular" EXACT PLURAL [] xref: TAO:0000814 xref: ZFIN:ZDB-ANAT-020309-187 is_a: UBERON:0008904 ! neuromast relationship: part_of ZFA:0000424 ! opercular lateral line (zebrafish) [Term] id: ZFA:0000815 name: nucleus of the medial longitudinal fasciculus medulla oblongata (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000815 xref: ZFIN:ZDB-ANAT-020309-188 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000817 name: fast muscle cell somite 23 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 23" EXACT PLURAL [] xref: TAO:0000817 xref: ZFIN:ZDB-ANAT-020309-19 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000805 ! myotome somite 23 (zebrafish) [Term] id: ZFA:0000819 name: postcommissural nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Periventricular nucleus which is contiguous with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus postcommissuralis" EXACT [] synonym: "postcommissural nucleus of V" EXACT [] xref: TAO:0000819 xref: ZFIN:ZDB-ANAT-020309-191 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0000820 name: presumptive neuron neural tube (zebrafish) namespace: zebrafish_anatomy comment: This term needs to be obsoleted. synonym: "presumptive neurons neural tube" EXACT PLURAL [] xref: TAO:0000820 xref: ZFIN:ZDB-ANAT-020309-192 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube [Term] id: ZFA:0000821 name: primary neuron hindbrain (zebrafish) namespace: zebrafish_anatomy synonym: "primary neurons hindbrain" EXACT PLURAL [] xref: TAO:0000821 xref: ZFIN:ZDB-ANAT-020309-195 is_a: CL:0000530 ! primary neuron [Term] id: ZFA:0000826 name: central nucleus torus semicircularis (zebrafish) namespace: zebrafish_anatomy def: "Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to audition. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "central nucleus of semicircular torus" EXACT [] synonym: "nucleus centralis tori semicircularis" EXACT [] xref: TAO:0000826 xref: ZFIN:ZDB-ANAT-020309-2 is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of ZFA:0000599 ! torus semicircularis (zebrafish) [Term] id: ZFA:0000827 name: fast muscle cell somite 26 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 26" EXACT PLURAL [] xref: TAO:0000827 xref: ZFIN:ZDB-ANAT-020309-20 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000807 ! myotome somite 26 (zebrafish) [Term] id: ZFA:0000829 name: sclerotome somite 11 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000829 xref: ZFIN:ZDB-ANAT-020309-201 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000725 ! somite 11 (zebrafish) [Term] id: ZFA:0000830 name: sclerotome somite 14 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000830 xref: ZFIN:ZDB-ANAT-020309-202 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000726 ! somite 14 (zebrafish) [Term] id: ZFA:0000831 name: sclerotome somite 17 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000831 xref: ZFIN:ZDB-ANAT-020309-203 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000727 ! somite 17 (zebrafish) [Term] id: ZFA:0000832 name: sclerotome somite 2 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000832 xref: ZFIN:ZDB-ANAT-020309-204 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000728 ! somite 2 (zebrafish) [Term] id: ZFA:0000833 name: sclerotome somite 22 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000833 xref: ZFIN:ZDB-ANAT-020309-205 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000978 ! somite 22 (zebrafish) [Term] id: ZFA:0000834 name: sclerotome somite 25 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000834 xref: ZFIN:ZDB-ANAT-020309-206 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000980 ! somite 25 (zebrafish) [Term] id: ZFA:0000835 name: sclerotome somite 28 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000835 xref: ZFIN:ZDB-ANAT-020309-207 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000856 ! somite 28 (zebrafish) [Term] id: ZFA:0000836 name: sclerotome somite 30 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000836 xref: ZFIN:ZDB-ANAT-020309-208 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000157 ! somite 30 (zebrafish) [Term] id: ZFA:0000837 name: sclerotome somite 6 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000837 xref: ZFIN:ZDB-ANAT-020309-209 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000982 ! somite 6 (zebrafish) [Term] id: ZFA:0000838 name: fast muscle cell somite 29 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 29" EXACT PLURAL [] xref: TAO:0000838 xref: ZFIN:ZDB-ANAT-020309-21 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000808 ! myotome somite 29 (zebrafish) [Term] id: ZFA:0000839 name: sclerotome somite 9 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000839 xref: ZFIN:ZDB-ANAT-020309-210 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000983 ! somite 9 (zebrafish) [Term] id: ZFA:0000840 name: slow muscle cell somite 11 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 11" EXACT PLURAL [] xref: TAO:0000840 xref: ZFIN:ZDB-ANAT-020309-211 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000801 ! myotome somite 11 (zebrafish) [Term] id: ZFA:0000841 name: slow muscle cell somite 14 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 14" EXACT PLURAL [] xref: TAO:0000841 xref: ZFIN:ZDB-ANAT-020309-212 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000044 ! myotome somite 14 (zebrafish) [Term] id: ZFA:0000842 name: slow muscle cell somite 17 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 17" EXACT PLURAL [] xref: TAO:0000842 xref: ZFIN:ZDB-ANAT-020309-213 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001015 ! myotome somite 17 (zebrafish) [Term] id: ZFA:0000843 name: slow muscle cell somite 2 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 2" EXACT PLURAL [] xref: TAO:0000843 xref: ZFIN:ZDB-ANAT-020309-214 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001016 ! myotome somite 2 (zebrafish) [Term] id: ZFA:0000844 name: slow muscle cell somite 22 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 22" EXACT PLURAL [] xref: TAO:0000844 xref: ZFIN:ZDB-ANAT-020309-215 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001017 ! myotome somite 22 (zebrafish) [Term] id: ZFA:0000845 name: slow muscle cell somite 25 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 25" EXACT PLURAL [] xref: TAO:0000845 xref: ZFIN:ZDB-ANAT-020309-216 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001018 ! myotome somite 25 (zebrafish) [Term] id: ZFA:0000846 name: slow muscle cell somite 28 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 28" EXACT PLURAL [] xref: TAO:0000846 xref: ZFIN:ZDB-ANAT-020309-217 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001019 ! myotome somite 28 (zebrafish) [Term] id: ZFA:0000847 name: slow muscle cell somite 30 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 30" EXACT PLURAL [] xref: TAO:0000847 xref: ZFIN:ZDB-ANAT-020309-218 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001020 ! myotome somite 30 (zebrafish) [Term] id: ZFA:0000848 name: slow muscle cell somite 6 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 6" EXACT PLURAL [] xref: TAO:0000848 xref: ZFIN:ZDB-ANAT-020309-219 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001021 ! myotome somite 6 (zebrafish) [Term] id: ZFA:0000849 name: fast muscle cell somite 4 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 4" EXACT PLURAL [] xref: TAO:0000849 xref: ZFIN:ZDB-ANAT-020309-22 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000809 ! myotome somite 4 (zebrafish) [Term] id: ZFA:0000850 name: slow muscle cell somite 9 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 9" EXACT PLURAL [] xref: TAO:0000850 xref: ZFIN:ZDB-ANAT-020309-220 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001022 ! myotome somite 9 (zebrafish) [Term] id: ZFA:0000851 name: somite 12 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000851 xref: ZFIN:ZDB-ANAT-020309-221 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000852 name: somite 15 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000852 xref: ZFIN:ZDB-ANAT-020309-222 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000853 name: somite 18 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000853 xref: ZFIN:ZDB-ANAT-020309-223 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000854 name: somite 21 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000854 xref: ZFIN:ZDB-ANAT-020309-224 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000855 name: somite 24 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000855 xref: ZFIN:ZDB-ANAT-020309-225 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000856 name: somite 28 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000856 xref: ZFIN:ZDB-ANAT-020309-226 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000857 name: somite 4 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000857 xref: ZFIN:ZDB-ANAT-020309-227 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000858 name: somite 8 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000858 xref: ZFIN:ZDB-ANAT-020309-228 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000859 name: specialized hemal arch and spine (zebrafish) namespace: zebrafish_anatomy synonym: "ha(pu)" EXACT [] synonym: "hemal arch (preural)" EXACT [ZFIN:ZDB-PUB-011008-1] synonym: "specialized haemal arch and spine" EXACT [] synonym: "specialized hemal arches and spines" EXACT PLURAL [] xref: TAO:0000859 xref: ZFIN:ZDB-ANAT-020309-229 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0000860 name: fast muscle cell somite 7 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 7" EXACT PLURAL [] xref: TAO:0000860 xref: ZFIN:ZDB-ANAT-020309-23 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000810 ! myotome somite 7 (zebrafish) [Term] id: ZFA:0000862 name: caudal fin skeleton (zebrafish) namespace: zebrafish_anatomy def: "Median fin skeleton supporting the caudal fin." [TAO:curator] xref: TAO:0000862 xref: ZFIN:ZDB-ANAT-020309-231 is_a: UBERON:0002543 ! median fin skeleton relationship: part_of ZFA:0001058 ! caudal fin (zebrafish) [Term] id: ZFA:0000864 name: epaxial region somite 1 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000864 xref: ZFIN:ZDB-ANAT-020309-233 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000924 ! myotome somite 1 (zebrafish) [Term] id: ZFA:0000865 name: epaxial region somite 12 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000865 xref: ZFIN:ZDB-ANAT-020309-234 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000926 ! myotome somite 12 (zebrafish) [Term] id: ZFA:0000866 name: epaxial region somite 15 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000866 xref: ZFIN:ZDB-ANAT-020309-235 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000802 ! myotome somite 15 (zebrafish) [Term] id: ZFA:0000867 name: epaxial region somite 18 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000867 xref: ZFIN:ZDB-ANAT-020309-236 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000803 ! myotome somite 18 (zebrafish) [Term] id: ZFA:0000868 name: epaxial region somite 20 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000868 xref: ZFIN:ZDB-ANAT-020309-237 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000804 ! myotome somite 20 (zebrafish) [Term] id: ZFA:0000869 name: epaxial region somite 23 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000869 xref: ZFIN:ZDB-ANAT-020309-238 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000805 ! myotome somite 23 (zebrafish) [Term] id: ZFA:0000870 name: epaxial region somite 26 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000870 xref: ZFIN:ZDB-ANAT-020309-239 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000807 ! myotome somite 26 (zebrafish) [Term] id: ZFA:0000872 name: epaxial region somite 29 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000872 xref: ZFIN:ZDB-ANAT-020309-240 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000808 ! myotome somite 29 (zebrafish) [Term] id: ZFA:0000873 name: epaxial region somite 4 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000873 xref: ZFIN:ZDB-ANAT-020309-241 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000809 ! myotome somite 4 (zebrafish) [Term] id: ZFA:0000874 name: epaxial region somite 7 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000874 xref: ZFIN:ZDB-ANAT-020309-242 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000810 ! myotome somite 7 (zebrafish) [Term] id: ZFA:0000876 name: fast muscle cell somite 11 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 11" EXACT PLURAL [] xref: TAO:0000876 xref: ZFIN:ZDB-ANAT-020309-244 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000801 ! myotome somite 11 (zebrafish) [Term] id: ZFA:0000877 name: fast muscle cell somite 14 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 14" EXACT PLURAL [] xref: TAO:0000877 xref: ZFIN:ZDB-ANAT-020309-245 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0000044 ! myotome somite 14 (zebrafish) [Term] id: ZFA:0000878 name: fast muscle cell somite 17 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 17" EXACT PLURAL [] xref: TAO:0000878 xref: ZFIN:ZDB-ANAT-020309-246 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001015 ! myotome somite 17 (zebrafish) [Term] id: ZFA:0000879 name: fast muscle cell somite 2 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 2" EXACT PLURAL [] xref: TAO:0000879 xref: ZFIN:ZDB-ANAT-020309-247 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001016 ! myotome somite 2 (zebrafish) [Term] id: ZFA:0000880 name: fast muscle cell somite 22 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 22" EXACT PLURAL [] xref: TAO:0000880 xref: ZFIN:ZDB-ANAT-020309-248 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001017 ! myotome somite 22 (zebrafish) [Term] id: ZFA:0000881 name: fast muscle cell somite 25 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 25" EXACT PLURAL [] xref: TAO:0000881 xref: ZFIN:ZDB-ANAT-020309-249 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001018 ! myotome somite 25 (zebrafish) [Term] id: ZFA:0000883 name: fast muscle cell somite 28 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 28" EXACT PLURAL [] xref: TAO:0000883 xref: ZFIN:ZDB-ANAT-020309-250 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001019 ! myotome somite 28 (zebrafish) [Term] id: ZFA:0000884 name: fast muscle cell somite 30 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 30" EXACT PLURAL [] xref: TAO:0000884 xref: ZFIN:ZDB-ANAT-020309-251 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001020 ! myotome somite 30 (zebrafish) [Term] id: ZFA:0000885 name: fast muscle cell somite 6 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 6" EXACT PLURAL [] xref: TAO:0000885 xref: ZFIN:ZDB-ANAT-020309-252 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001021 ! myotome somite 6 (zebrafish) [Term] id: ZFA:0000886 name: fast muscle cell somite 9 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "fast muscle cells somite 9" EXACT PLURAL [] xref: TAO:0000886 xref: ZFIN:ZDB-ANAT-020309-253 is_a: CL:0000190 ! fast muscle cell relationship: part_of ZFA:0001022 ! myotome somite 9 (zebrafish) [Term] id: ZFA:0000887 name: floor plate neural rod (zebrafish) namespace: zebrafish_anatomy def: "Floor plate that is part of the neural rod." [ZFIN:curator] synonym: "floorplate neural rod" EXACT [] xref: TAO:0000887 xref: ZFIN:ZDB-ANAT-020309-254 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0003079 ! floor plate relationship: part_of UBERON:0005068 ! neural rod [Term] id: ZFA:0000891 name: hypaxial region somite 1 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000891 xref: ZFIN:ZDB-ANAT-020309-258 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000924 ! myotome somite 1 (zebrafish) [Term] id: ZFA:0000892 name: hypaxial region somite 12 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000892 xref: ZFIN:ZDB-ANAT-020309-259 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000926 ! myotome somite 12 (zebrafish) [Term] id: ZFA:0000894 name: hypaxial region somite 15 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000894 xref: ZFIN:ZDB-ANAT-020309-260 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000802 ! myotome somite 15 (zebrafish) [Term] id: ZFA:0000895 name: hypaxial region somite 18 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000895 xref: ZFIN:ZDB-ANAT-020309-261 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000803 ! myotome somite 18 (zebrafish) [Term] id: ZFA:0000896 name: hypaxial region somite 20 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000896 xref: ZFIN:ZDB-ANAT-020309-262 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000804 ! myotome somite 20 (zebrafish) [Term] id: ZFA:0000897 name: hypaxial region somite 23 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000897 xref: ZFIN:ZDB-ANAT-020309-263 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000805 ! myotome somite 23 (zebrafish) [Term] id: ZFA:0000898 name: hypaxial region somite 26 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000898 xref: ZFIN:ZDB-ANAT-020309-264 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000807 ! myotome somite 26 (zebrafish) [Term] id: ZFA:0000899 name: hypaxial region somite 29 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000899 xref: ZFIN:ZDB-ANAT-020309-265 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000808 ! myotome somite 29 (zebrafish) [Term] id: ZFA:0000900 name: hypaxial region somite 4 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000900 xref: ZFIN:ZDB-ANAT-020309-266 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000809 ! myotome somite 4 (zebrafish) [Term] id: ZFA:0000901 name: hypaxial region somite 7 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000901 xref: ZFIN:ZDB-ANAT-020309-267 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000810 ! myotome somite 7 (zebrafish) [Term] id: ZFA:0000902 name: hypural musculature (zebrafish) namespace: zebrafish_anatomy synonym: "hypural muscles" EXACT PLURAL [] xref: TAO:0000902 xref: ZFIN:ZDB-ANAT-020309-268 is_a: UBERON:0001630 ! muscle organ relationship: part_of ZFA:0000628 ! caudal fin musculature (zebrafish) [Term] id: ZFA:0000910 name: medial forebrain bundle telencephalon (zebrafish) namespace: zebrafish_anatomy synonym: "medial forebrain bundles telencephalon" EXACT PLURAL [] xref: TAO:0000910 xref: ZFIN:ZDB-ANAT-020309-275 is_a: ZFA:0000597 ! telencephalic white matter (zebrafish) relationship: part_of UBERON:0001910 ! medial forebrain bundle [Term] id: ZFA:0000911 name: medial pterygiophores dorsal fin namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-020309-276 [Term] id: ZFA:0000912 name: mesenchyme median fin fold (zebrafish) namespace: zebrafish_anatomy def: "Mesenchyme part of median fin fold." [ZFIN:curator] xref: TAO:0000912 xref: ZFIN:ZDB-ANAT-020309-278 is_a: UBERON:0003104 ! mesenchyme relationship: part_of ZFA:0000040 ! median fin fold (zebrafish) [Term] id: ZFA:0000913 name: molecular layer valvula cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is part of the valvula cerebelli and contains neuronal cell bodies." [ZFIN:curator] xref: TAO:0000913 xref: ZFIN:ZDB-ANAT-020309-279 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000603 ! valvula cerebelli (zebrafish) [Term] id: ZFA:0000915 name: muscle pioneer somite 11 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 11" EXACT PLURAL [] xref: TAO:0000915 xref: ZFIN:ZDB-ANAT-020309-280 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000840 ! slow muscle cell somite 11 (zebrafish) [Term] id: ZFA:0000916 name: muscle pioneer somite 14 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 14" EXACT PLURAL [] xref: TAO:0000916 xref: ZFIN:ZDB-ANAT-020309-281 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000841 ! slow muscle cell somite 14 (zebrafish) [Term] id: ZFA:0000917 name: muscle pioneer somite 17 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 17" EXACT PLURAL [] xref: TAO:0000917 xref: ZFIN:ZDB-ANAT-020309-282 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000842 ! slow muscle cell somite 17 (zebrafish) [Term] id: ZFA:0000918 name: muscle pioneer somite 20 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 20" EXACT PLURAL [] xref: TAO:0000918 xref: ZFIN:ZDB-ANAT-020309-283 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000967 ! slow muscle cell somite 20 (zebrafish) [Term] id: ZFA:0000919 name: muscle pioneer somite 23 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 23" EXACT PLURAL [] xref: TAO:0000919 xref: ZFIN:ZDB-ANAT-020309-284 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000969 ! slow muscle cell somite 23 (zebrafish) [Term] id: ZFA:0000920 name: muscle pioneer somite 26 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 26" EXACT PLURAL [] xref: TAO:0000920 xref: ZFIN:ZDB-ANAT-020309-285 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000970 ! slow muscle cell somite 26 (zebrafish) [Term] id: ZFA:0000921 name: muscle pioneer somite 29 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 29" EXACT PLURAL [] xref: TAO:0000921 xref: ZFIN:ZDB-ANAT-020309-286 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000971 ! slow muscle cell somite 29 (zebrafish) [Term] id: ZFA:0000922 name: muscle pioneer somite 4 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 4" EXACT PLURAL [] xref: TAO:0000922 xref: ZFIN:ZDB-ANAT-020309-287 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000972 ! slow muscle cell somite 4 (zebrafish) [Term] id: ZFA:0000923 name: muscle pioneer somite 7 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 7" EXACT PLURAL [] xref: TAO:0000923 xref: ZFIN:ZDB-ANAT-020309-288 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000973 ! slow muscle cell somite 7 (zebrafish) [Term] id: ZFA:0000924 name: myotome somite 1 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000924 xref: ZFIN:ZDB-ANAT-020309-289 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000072 ! somite 1 (zebrafish) [Term] id: ZFA:0000925 name: hypaxial region somite 10 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000925 xref: ZFIN:ZDB-ANAT-020309-29 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001013 ! myotome somite 10 (zebrafish) [Term] id: ZFA:0000926 name: myotome somite 12 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000926 xref: ZFIN:ZDB-ANAT-020309-290 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000851 ! somite 12 (zebrafish) [Term] id: ZFA:0000927 name: myotome somite 16 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000927 xref: ZFIN:ZDB-ANAT-020309-291 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000976 ! somite 16 (zebrafish) [Term] id: ZFA:0000928 name: myotome somite 19 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000928 xref: ZFIN:ZDB-ANAT-020309-292 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000977 ! somite 19 (zebrafish) [Term] id: ZFA:0000929 name: myotome somite 21 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000929 xref: ZFIN:ZDB-ANAT-020309-293 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000854 ! somite 21 (zebrafish) [Term] id: ZFA:0000930 name: myotome somite 24 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000930 xref: ZFIN:ZDB-ANAT-020309-294 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000855 ! somite 24 (zebrafish) [Term] id: ZFA:0000931 name: myotome somite 27 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000931 xref: ZFIN:ZDB-ANAT-020309-295 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000731 ! somite 27 (zebrafish) [Term] id: ZFA:0000932 name: myotome somite 3 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000932 xref: ZFIN:ZDB-ANAT-020309-296 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000732 ! somite 3 (zebrafish) [Term] id: ZFA:0000933 name: myotome somite 5 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000933 xref: ZFIN:ZDB-ANAT-020309-297 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000073 ! somite 5 (zebrafish) [Term] id: ZFA:0000934 name: myotome somite 8 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000934 xref: ZFIN:ZDB-ANAT-020309-298 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000858 ! somite 8 (zebrafish) [Term] id: ZFA:0000936 name: dorsal fin distal radial (zebrafish) namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] synonym: "dorsal fin distal radials" EXACT PLURAL [] xref: TAO:0000936 xref: ZFIN:ZDB-ANAT-020309-3 is_a: ZFA:0001647 ! dorsal fin radial (zebrafish) relationship: part_of ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0000937 name: hypaxial region somite 13 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000937 xref: ZFIN:ZDB-ANAT-020309-30 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0001014 ! myotome somite 13 (zebrafish) [Term] id: ZFA:0000939 name: middle lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast middle" EXACT [] synonym: "neuromasts middle" EXACT PLURAL [] xref: TAO:0000939 xref: ZFIN:ZDB-ANAT-020309-301 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003096 ! middle lateral line [Term] id: ZFA:0000940 name: posterior lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) " [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast posterior" EXACT [] synonym: "neuromasts posterior" EXACT PLURAL [] xref: TAO:0000940 xref: ZFIN:ZDB-ANAT-020309-302 is_a: UBERON:0008904 ! neuromast relationship: develops_from ZFA:0001157 ! posterior lateral line primordium (zebrafish) relationship: part_of UBERON:0006334 ! posterior lateral line [Term] id: ZFA:0000941 name: nucleus of the medial longitudinal fasciculus synencephalon (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure, and extends axons into the medial longitudinal fasciculus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0000941 xref: ZFIN:ZDB-ANAT-020309-303 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000293 ! synencephalon (zebrafish) [Term] id: ZFA:0000946 name: hypaxial region somite 16 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000946 xref: ZFIN:ZDB-ANAT-020309-31 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000927 ! myotome somite 16 (zebrafish) [Term] id: ZFA:0000947 name: dorsal fin proximal radial (zebrafish) namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials." [ZFIN:curator] synonym: "dorsal fin proximal radials" EXACT PLURAL [] xref: TAO:0000947 xref: ZFIN:ZDB-ANAT-020309-310 is_a: ZFA:0001647 ! dorsal fin radial (zebrafish) relationship: part_of ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0000952 name: sclerotome somite 1 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000952 xref: ZFIN:ZDB-ANAT-020309-315 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000072 ! somite 1 (zebrafish) [Term] id: ZFA:0000953 name: sclerotome somite 12 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000953 xref: ZFIN:ZDB-ANAT-020309-316 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000851 ! somite 12 (zebrafish) [Term] id: ZFA:0000954 name: sclerotome somite 15 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000954 xref: ZFIN:ZDB-ANAT-020309-317 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000852 ! somite 15 (zebrafish) [Term] id: ZFA:0000955 name: sclerotome somite 18 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000955 xref: ZFIN:ZDB-ANAT-020309-318 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000853 ! somite 18 (zebrafish) [Term] id: ZFA:0000956 name: sclerotome somite 20 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000956 xref: ZFIN:ZDB-ANAT-020309-319 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000156 ! somite 20 (zebrafish) [Term] id: ZFA:0000957 name: hypaxial region somite 19 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000957 xref: ZFIN:ZDB-ANAT-020309-32 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000928 ! myotome somite 19 (zebrafish) [Term] id: ZFA:0000958 name: sclerotome somite 23 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000958 xref: ZFIN:ZDB-ANAT-020309-320 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000730 ! somite 23 (zebrafish) [Term] id: ZFA:0000959 name: sclerotome somite 26 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000959 xref: ZFIN:ZDB-ANAT-020309-321 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000074 ! somite 26 (zebrafish) [Term] id: ZFA:0000960 name: sclerotome somite 29 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000960 xref: ZFIN:ZDB-ANAT-020309-322 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000981 ! somite 29 (zebrafish) [Term] id: ZFA:0000961 name: sclerotome somite 4 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000961 xref: ZFIN:ZDB-ANAT-020309-323 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000857 ! somite 4 (zebrafish) [Term] id: ZFA:0000962 name: sclerotome somite 7 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000962 xref: ZFIN:ZDB-ANAT-020309-324 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000733 ! somite 7 (zebrafish) [Term] id: ZFA:0000963 name: slow muscle cell somite 1 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 1" EXACT PLURAL [] xref: TAO:0000963 xref: ZFIN:ZDB-ANAT-020309-325 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000924 ! myotome somite 1 (zebrafish) [Term] id: ZFA:0000964 name: slow muscle cell somite 12 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 12" EXACT PLURAL [] xref: TAO:0000964 xref: ZFIN:ZDB-ANAT-020309-326 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000926 ! myotome somite 12 (zebrafish) [Term] id: ZFA:0000965 name: slow muscle cell somite 15 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 15" EXACT PLURAL [] xref: TAO:0000965 xref: ZFIN:ZDB-ANAT-020309-327 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000802 ! myotome somite 15 (zebrafish) [Term] id: ZFA:0000966 name: slow muscle cell somite 18 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 18" EXACT PLURAL [] xref: TAO:0000966 xref: ZFIN:ZDB-ANAT-020309-328 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000803 ! myotome somite 18 (zebrafish) [Term] id: ZFA:0000967 name: slow muscle cell somite 20 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 20" EXACT PLURAL [] xref: TAO:0000967 xref: ZFIN:ZDB-ANAT-020309-329 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000804 ! myotome somite 20 (zebrafish) [Term] id: ZFA:0000968 name: hypaxial region somite 21 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000968 xref: ZFIN:ZDB-ANAT-020309-33 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000929 ! myotome somite 21 (zebrafish) [Term] id: ZFA:0000969 name: slow muscle cell somite 23 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 23" EXACT PLURAL [] xref: TAO:0000969 xref: ZFIN:ZDB-ANAT-020309-330 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000805 ! myotome somite 23 (zebrafish) [Term] id: ZFA:0000970 name: slow muscle cell somite 26 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 26" EXACT PLURAL [] xref: TAO:0000970 xref: ZFIN:ZDB-ANAT-020309-331 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000807 ! myotome somite 26 (zebrafish) [Term] id: ZFA:0000971 name: slow muscle cell somite 29 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 29" EXACT PLURAL [] xref: TAO:0000971 xref: ZFIN:ZDB-ANAT-020309-332 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000808 ! myotome somite 29 (zebrafish) [Term] id: ZFA:0000972 name: slow muscle cell somite 4 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 4" EXACT PLURAL [] xref: TAO:0000972 xref: ZFIN:ZDB-ANAT-020309-333 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000809 ! myotome somite 4 (zebrafish) [Term] id: ZFA:0000973 name: slow muscle cell somite 7 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 7" EXACT PLURAL [] xref: TAO:0000973 xref: ZFIN:ZDB-ANAT-020309-334 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000810 ! myotome somite 7 (zebrafish) [Term] id: ZFA:0000974 name: somite 10 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000974 xref: ZFIN:ZDB-ANAT-020309-335 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000975 name: somite 13 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000975 xref: ZFIN:ZDB-ANAT-020309-336 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000976 name: somite 16 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000976 xref: ZFIN:ZDB-ANAT-020309-337 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000977 name: somite 19 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000977 xref: ZFIN:ZDB-ANAT-020309-338 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000978 name: somite 22 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000978 xref: ZFIN:ZDB-ANAT-020309-339 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000979 name: hypaxial region somite 24 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000979 xref: ZFIN:ZDB-ANAT-020309-34 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000930 ! myotome somite 24 (zebrafish) [Term] id: ZFA:0000980 name: somite 25 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000980 xref: ZFIN:ZDB-ANAT-020309-340 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000981 name: somite 29 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000981 xref: ZFIN:ZDB-ANAT-020309-341 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000982 name: somite 6 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000982 xref: ZFIN:ZDB-ANAT-020309-342 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000983 name: somite 9 (zebrafish) namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000983 xref: ZFIN:ZDB-ANAT-020309-343 is_a: UBERON:0002329 ! somite [Term] id: ZFA:0000984 name: superior reticular formation tegmentum (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000984 xref: ZFIN:ZDB-ANAT-020309-344 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: ZFA:0000985 name: ventral rhombencephalic commissure medulla oblongata (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000985 xref: ZFIN:ZDB-ANAT-020309-345 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0000986 name: hypaxial region somite 27 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000986 xref: ZFIN:ZDB-ANAT-020309-35 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000931 ! myotome somite 27 (zebrafish) [Term] id: ZFA:0000987 name: hypaxial region somite 3 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000987 xref: ZFIN:ZDB-ANAT-020309-36 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000932 ! myotome somite 3 (zebrafish) [Term] id: ZFA:0000988 name: hypaxial region somite 5 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000988 xref: ZFIN:ZDB-ANAT-020309-37 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000933 ! myotome somite 5 (zebrafish) [Term] id: ZFA:0000989 name: hypaxial region somite 8 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000989 xref: ZFIN:ZDB-ANAT-020309-38 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of ZFA:0000934 ! myotome somite 8 (zebrafish) [Term] id: ZFA:0000991 name: epaxial region somite 10 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000991 xref: ZFIN:ZDB-ANAT-020309-4 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001013 ! myotome somite 10 (zebrafish) [Term] id: ZFA:0000992 name: lateral migration pathway mesenchyme (zebrafish) namespace: zebrafish_anatomy xref: TAO:0000992 xref: ZFIN:ZDB-ANAT-020309-41 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0007214 ! mesenchyme derived from trunk neural crest [Term] id: ZFA:0000993 name: lateral wall neural rod (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue located at either side of the neural rod." [ZFIN:curator] xref: TAO:0000993 xref: ZFIN:ZDB-ANAT-020309-42 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0005068 ! neural rod [Term] id: ZFA:0000997 name: medial funicular nucleus trigeminal nucleus (zebrafish) namespace: zebrafish_anatomy synonym: "medial funicular nucleus trigeminal nuclei" EXACT PLURAL [] xref: TAO:0000997 xref: ZFIN:ZDB-ANAT-020309-46 is_a: UBERON:0004132 ! trigeminal sensory nucleus [Term] id: ZFA:0001001 name: epaxial region somite 13 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001001 xref: ZFIN:ZDB-ANAT-020309-5 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0001014 ! myotome somite 13 (zebrafish) [Term] id: ZFA:0001002 name: peripheral motor axons namespace: zebrafish_anatomy is_obsolete: true comment: Consider post-composing ZFA:0009052 motor neuron with GO:0030424 axon xref: TAO:0001002 xref: ZFIN:ZDB-ANAT-020309-50 [Term] id: ZFA:0001003 name: muscle pioneer somite 12 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 12" EXACT PLURAL [] xref: TAO:0001003 xref: ZFIN:ZDB-ANAT-020309-51 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000964 ! slow muscle cell somite 12 (zebrafish) [Term] id: ZFA:0001004 name: muscle pioneer somite 15 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 15" EXACT PLURAL [] xref: TAO:0001004 xref: ZFIN:ZDB-ANAT-020309-52 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000965 ! slow muscle cell somite 15 (zebrafish) [Term] id: ZFA:0001005 name: muscle pioneer somite 18 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 18" EXACT PLURAL [] xref: TAO:0001005 xref: ZFIN:ZDB-ANAT-020309-53 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000966 ! slow muscle cell somite 18 (zebrafish) [Term] id: ZFA:0001006 name: muscle pioneer somite 21 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 21" EXACT PLURAL [] xref: TAO:0001006 xref: ZFIN:ZDB-ANAT-020309-54 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000719 ! slow muscle cell somite 21 (zebrafish) [Term] id: ZFA:0001007 name: muscle pioneer somite 24 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 24" EXACT PLURAL [] xref: TAO:0001007 xref: ZFIN:ZDB-ANAT-020309-55 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000720 ! slow muscle cell somite 24 (zebrafish) [Term] id: ZFA:0001008 name: muscle pioneer somite 27 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 27" EXACT PLURAL [] xref: TAO:0001008 xref: ZFIN:ZDB-ANAT-020309-56 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000721 ! slow muscle cell somite 27 (zebrafish) [Term] id: ZFA:0001009 name: muscle pioneer somite 3 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 3" EXACT PLURAL [] xref: TAO:0001009 xref: ZFIN:ZDB-ANAT-020309-57 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000722 ! slow muscle cell somite 3 (zebrafish) [Term] id: ZFA:0001010 name: muscle pioneer somite 5 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 5" EXACT PLURAL [] xref: TAO:0001010 xref: ZFIN:ZDB-ANAT-020309-58 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000723 ! slow muscle cell somite 5 (zebrafish) [Term] id: ZFA:0001011 name: muscle pioneer somite 8 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers somite 8" EXACT PLURAL [] xref: TAO:0001011 xref: ZFIN:ZDB-ANAT-020309-59 is_a: ZFA:0001086 ! muscle pioneer (zebrafish) relationship: part_of ZFA:0000724 ! slow muscle cell somite 8 (zebrafish) [Term] id: ZFA:0001012 name: epaxial region somite 16 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001012 xref: ZFIN:ZDB-ANAT-020309-6 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000927 ! myotome somite 16 (zebrafish) [Term] id: ZFA:0001013 name: myotome somite 10 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001013 xref: ZFIN:ZDB-ANAT-020309-60 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000974 ! somite 10 (zebrafish) [Term] id: ZFA:0001014 name: myotome somite 13 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001014 xref: ZFIN:ZDB-ANAT-020309-61 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000975 ! somite 13 (zebrafish) [Term] id: ZFA:0001015 name: myotome somite 17 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001015 xref: ZFIN:ZDB-ANAT-020309-62 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000727 ! somite 17 (zebrafish) [Term] id: ZFA:0001016 name: myotome somite 2 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001016 xref: ZFIN:ZDB-ANAT-020309-63 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000728 ! somite 2 (zebrafish) [Term] id: ZFA:0001017 name: myotome somite 22 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001017 xref: ZFIN:ZDB-ANAT-020309-64 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000978 ! somite 22 (zebrafish) [Term] id: ZFA:0001018 name: myotome somite 25 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001018 xref: ZFIN:ZDB-ANAT-020309-65 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000980 ! somite 25 (zebrafish) [Term] id: ZFA:0001019 name: myotome somite 28 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001019 xref: ZFIN:ZDB-ANAT-020309-66 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000856 ! somite 28 (zebrafish) [Term] id: ZFA:0001020 name: myotome somite 30 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001020 xref: ZFIN:ZDB-ANAT-020309-67 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000157 ! somite 30 (zebrafish) [Term] id: ZFA:0001021 name: myotome somite 6 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001021 xref: ZFIN:ZDB-ANAT-020309-68 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000982 ! somite 6 (zebrafish) [Term] id: ZFA:0001022 name: myotome somite 9 (zebrafish) namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001022 xref: ZFIN:ZDB-ANAT-020309-69 is_a: UBERON:0003082 ! myotome relationship: part_of ZFA:0000983 ! somite 9 (zebrafish) [Term] id: ZFA:0001023 name: epaxial region somite 19 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001023 xref: ZFIN:ZDB-ANAT-020309-7 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000928 ! myotome somite 19 (zebrafish) [Term] id: ZFA:0001025 name: occipital lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) " [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast occipital" EXACT [] synonym: "neuromasts occipital" EXACT PLURAL [] xref: TAO:0001025 xref: ZFIN:ZDB-ANAT-020309-72 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003093 ! occipital lateral line [Term] id: ZFA:0001026 name: supraorbital lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) " [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast supraorbital" EXACT [] synonym: "neuromasts supraorbital" EXACT PLURAL [] xref: TAO:0001026 xref: ZFIN:ZDB-ANAT-020309-73 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003090 ! supraorbital lateral line [Term] id: ZFA:0001028 name: hypurapophysis (zebrafish) namespace: zebrafish_anatomy def: "The paired bony lateral extensions off the parhypural." [ZFIN:ZDB-PUB-011008-1] synonym: "hypurapophyses" EXACT PLURAL [] synonym: "parhypurapophysis" EXACT [] synonym: "parhypurapophysis process" EXACT [] xref: TAO:0001028 xref: ZFIN:ZDB-ANAT-020309-75 is_a: ZFA:0000859 ! specialized hemal arch and spine (zebrafish) relationship: part_of ZFA:0000438 ! parhypural (zebrafish) [Term] id: ZFA:0001030 name: epaxial region somite 21 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001030 xref: ZFIN:ZDB-ANAT-020309-8 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000929 ! myotome somite 21 (zebrafish) [Term] id: ZFA:0001036 name: sclerotome somite 10 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001036 xref: ZFIN:ZDB-ANAT-020309-86 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000974 ! somite 10 (zebrafish) [Term] id: ZFA:0001037 name: sclerotome somite 13 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001037 xref: ZFIN:ZDB-ANAT-020309-87 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000975 ! somite 13 (zebrafish) [Term] id: ZFA:0001038 name: sclerotome somite 16 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001038 xref: ZFIN:ZDB-ANAT-020309-88 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000976 ! somite 16 (zebrafish) [Term] id: ZFA:0001039 name: sclerotome somite 19 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001039 xref: ZFIN:ZDB-ANAT-020309-89 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000977 ! somite 19 (zebrafish) [Term] id: ZFA:0001040 name: epaxial region somite 24 (zebrafish) namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001040 xref: ZFIN:ZDB-ANAT-020309-9 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of ZFA:0000930 ! myotome somite 24 (zebrafish) [Term] id: ZFA:0001041 name: sclerotome somite 21 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001041 xref: ZFIN:ZDB-ANAT-020309-90 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000854 ! somite 21 (zebrafish) [Term] id: ZFA:0001042 name: sclerotome somite 24 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001042 xref: ZFIN:ZDB-ANAT-020309-91 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000855 ! somite 24 (zebrafish) [Term] id: ZFA:0001043 name: sclerotome somite 27 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001043 xref: ZFIN:ZDB-ANAT-020309-92 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000731 ! somite 27 (zebrafish) [Term] id: ZFA:0001044 name: sclerotome somite 3 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001044 xref: ZFIN:ZDB-ANAT-020309-93 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000732 ! somite 3 (zebrafish) [Term] id: ZFA:0001045 name: sclerotome somite 5 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001045 xref: ZFIN:ZDB-ANAT-020309-94 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000073 ! somite 5 (zebrafish) [Term] id: ZFA:0001046 name: sclerotome somite 8 (zebrafish) namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001046 xref: ZFIN:ZDB-ANAT-020309-95 is_a: UBERON:0003089 ! sclerotome relationship: part_of ZFA:0000858 ! somite 8 (zebrafish) [Term] id: ZFA:0001047 name: slow muscle cell somite 10 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 10" EXACT PLURAL [] xref: TAO:0001047 xref: ZFIN:ZDB-ANAT-020309-96 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001013 ! myotome somite 10 (zebrafish) [Term] id: ZFA:0001048 name: slow muscle cell somite 13 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 13" EXACT PLURAL [] xref: TAO:0001048 xref: ZFIN:ZDB-ANAT-020309-97 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0001014 ! myotome somite 13 (zebrafish) [Term] id: ZFA:0001049 name: slow muscle cell somite 16 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 16" EXACT PLURAL [] xref: TAO:0001049 xref: ZFIN:ZDB-ANAT-020309-98 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000927 ! myotome somite 16 (zebrafish) [Term] id: ZFA:0001050 name: slow muscle cell somite 19 (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "slow muscle cells somite 19" EXACT PLURAL [] xref: TAO:0001050 xref: ZFIN:ZDB-ANAT-020309-99 is_a: CL:0000189 ! slow muscle cell relationship: part_of ZFA:0000928 ! myotome somite 19 (zebrafish) [Term] id: ZFA:0001051 name: caudal division of the internal carotid artery (zebrafish) namespace: zebrafish_anatomy synonym: "CaDI" EXACT [] xref: TAO:0001051 xref: ZFIN:ZDB-ANAT-020702-1 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001532 ! internal carotid artery [Term] id: ZFA:0001052 name: primordial hindbrain channel (zebrafish) namespace: zebrafish_anatomy def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins." [ZFIN:ZDB-PUB-010205-5] synonym: "PHBC" EXACT [] synonym: "medial head vein" EXACT [] xref: TAO:0001052 xref: ZFIN:ZDB-ANAT-020702-10 is_a: UBERON:0001638 ! vein relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0001053 name: primitive internal carotid artery (zebrafish) namespace: zebrafish_anatomy synonym: "PICA" EXACT [] xref: TAO:0001053 xref: ZFIN:ZDB-ANAT-020702-11 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0001054 name: lateral dorsal aorta (zebrafish) namespace: zebrafish_anatomy def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is called the radix of the aorta." [ZFIN:ZDB-PUB-010205-5] synonym: "LDA" EXACT [] xref: TAO:0001054 xref: ZFIN:ZDB-ANAT-020702-12 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0001055 name: pronephric duct opening (zebrafish) namespace: zebrafish_anatomy def: "The juncture where the pronephric ducts empty into the cloaca." [ZFIN:curator] synonym: "pronephric duct openings" EXACT PLURAL [] xref: TAO:0001055 xref: ZFIN:ZDB-ANAT-020702-13 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000162 ! cloaca relationship: part_of UBERON:0003060 ! pronephric duct [Term] id: ZFA:0001058 name: caudal fin (zebrafish) namespace: zebrafish_anatomy def: "Fin that is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines." [ZFIN:ZDB-PUB-011008-1] synonym: "tail" EXACT [] synonym: "tail fin" EXACT [] xref: TAO:0001058 xref: ZFIN:ZDB-ANAT-020702-16 is_a: ZFA:0005597 ! median fin (zebrafish) relationship: develops_from ZFA:0001069 ! ventral fin fold (zebrafish) relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: ZFA:0001059 name: cranial division of the internal carotid artery (zebrafish) namespace: zebrafish_anatomy synonym: "CrDI" EXACT [] synonym: "rostral division of the internal carotid artery" EXACT [] xref: TAO:0001059 xref: ZFIN:ZDB-ANAT-020702-17 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001532 ! internal carotid artery [Term] id: ZFA:0001060 name: basidorsal (zebrafish) namespace: zebrafish_anatomy def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [ZFIN:curator] synonym: "arcualia" RELATED [] xref: TAO:0001060 xref: ZFIN:ZDB-ANAT-060331-5 is_a: ZFA:0001457 ! postcranial axial cartilage (zebrafish) [Term] id: ZFA:0001062 name: primitive mesencephalic artery (zebrafish) namespace: zebrafish_anatomy def: "Branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary" [ZFIN:curator] synonym: "PMsA" EXACT [] xref: TAO:0001062 xref: ZFIN:ZDB-ANAT-020702-2 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0001063 name: posterior caudal vein (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001063 xref: ZFIN:ZDB-ANAT-020702-20 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0010204 ! tail vasculature [Term] id: ZFA:0001065 name: lateral mesoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001065 xref: ZFIN:ZDB-ANAT-020702-4 is_a: UBERON:0000926 ! mesoderm [Term] id: ZFA:0001069 name: ventral fin fold (zebrafish) namespace: zebrafish_anatomy synonym: "anal fin fold" EXACT [] synonym: "tail fin fold" EXACT [] synonym: "ventral fin" EXACT [] xref: TAO:0001069 xref: ZFIN:ZDB-ANAT-020702-8 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of ZFA:0000040 ! median fin fold (zebrafish) [Term] id: ZFA:0001073 name: axial vasculature (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001073 xref: ZFIN:ZDB-ANAT-030922-11 is_a: UBERON:0002049 ! vasculature [Term] id: ZFA:0001076 name: intestinal bulb (zebrafish) namespace: zebrafish_anatomy def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area." [ZFIN:ZDB-PUB-050120-6] synonym: "anterior intestine" EXACT [] xref: TAO:0001076 xref: ZFIN:ZDB-ANAT-030922-14 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000160 ! intestine [Term] id: ZFA:0001086 name: muscle pioneer (zebrafish) namespace: zebrafish_anatomy subset: cell_slim ! cell_slim synonym: "muscle pioneers" EXACT PLURAL [] synonym: "non migratory adaxial cells" EXACT [] xref: TAO:0001086 xref: ZFIN:ZDB-ANAT-031211-14 is_a: CL:0000000 ! cell relationship: part_of CL:0000189 ! slow muscle cell [Term] id: ZFA:0001089 name: myoseptum (zebrafish) namespace: zebrafish_anatomy synonym: "myosepta" EXACT PLURAL [] xref: TAO:0001089 xref: ZFIN:ZDB-ANAT-031211-5 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003082 ! myotome [Term] id: ZFA:0001093 name: unspecified (zebrafish) namespace: zebrafish_anatomy def: "Annotation with this anatomy term indicates that a structure was not specified by the author." [ZFIN:curator] xref: TAO:0001093 xref: ZFIN:ZDB-ANAT-041102-1 is_a: UBERON:0001062 ! anatomical entity [Term] id: ZFA:0001095 name: immature macula (zebrafish) namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature macula." [ZFIN:curator] synonym: "immature maculae" EXACT PLURAL [] synonym: "immature sensory patch" EXACT [] synonym: "immature sensory patches" EXACT PLURAL [] xref: TAO:0001095 xref: ZFIN:ZDB-ANAT-050228-10 is_a: ZFA:0007070 ! otic sensory epithelium (zebrafish) relationship: part_of UBERON:0003051 ! ear vesicle [Term] id: ZFA:0001096 name: immature anterior macula (zebrafish) namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature anterior macula." [ZFIN:curator] synonym: "immature anterior maculae" EXACT PLURAL [] xref: TAO:0001096 xref: ZFIN:ZDB-ANAT-050228-11 is_a: ZFA:0007070 ! otic sensory epithelium (zebrafish) relationship: part_of ZFA:0001095 ! immature macula (zebrafish) [Term] id: ZFA:0001097 name: immature posterior macula (zebrafish) namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature posterior macula." [ZFIN:curator] synonym: "immature posterior maculae" EXACT PLURAL [] xref: TAO:0001097 xref: ZFIN:ZDB-ANAT-050228-12 is_a: ZFA:0007070 ! otic sensory epithelium (zebrafish) relationship: part_of ZFA:0001095 ! immature macula (zebrafish) [Term] id: ZFA:0001098 name: immature hair cell anterior macula (zebrafish) namespace: zebrafish_anatomy synonym: "immature sensory hair cells anterior macula" EXACT PLURAL [] xref: TAO:0001098 xref: ZFIN:ZDB-ANAT-050228-13 is_a: CL:0000855 ! sensory hair cell relationship: part_of ZFA:0001096 ! immature anterior macula (zebrafish) [Term] id: ZFA:0001099 name: immature hair cell posterior macula (zebrafish) namespace: zebrafish_anatomy synonym: "immature sensory hair cells posterior macula" EXACT PLURAL [] xref: TAO:0001099 xref: ZFIN:ZDB-ANAT-050228-14 is_a: CL:0000855 ! sensory hair cell relationship: part_of ZFA:0001097 ! immature posterior macula (zebrafish) [Term] id: ZFA:0001118 name: urogenital papilla (zebrafish) namespace: zebrafish_anatomy def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed." [ZFIN:ZDB-PUB-040526-4] synonym: "UGP" EXACT [] synonym: "anal papilla" EXACT [] synonym: "anal papillae" EXACT [] synonym: "genital papilla" EXACT [] synonym: "urogenital papillae" EXACT PLURAL [] xref: TAO:0001118 xref: ZFIN:ZDB-ANAT-050228-31 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000990 ! reproductive system [Term] id: ZFA:0001124 name: dorsal fin skeleton (zebrafish) namespace: zebrafish_anatomy def: "Median fin skeleton located on the dorsal surface of the organism." [TAO:curator] xref: TAO:0001124 xref: ZFIN:ZDB-ANAT-050228-37 is_a: UBERON:0002543 ! median fin skeleton relationship: part_of UBERON:0003097 ! dorsal fin [Term] id: ZFA:0001125 name: organizer inducing center (zebrafish) namespace: zebrafish_anatomy def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield." [ZFIN:ZDB-PUB-991102-7] synonym: "Nieuwkoop center" EXACT [] xref: TAO:0001125 xref: ZFIN:ZDB-ANAT-050228-38 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000088 ! YSL (zebrafish) [Term] id: ZFA:0001126 name: noninvoluting endocytic marginal cell cluster (zebrafish) namespace: zebrafish_anatomy def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution." [ZFIN:ZDB-PUB-970107-2] synonym: "NEM" EXACT [] synonym: "noninvoluting endocytic marginal cells" EXACT PLURAL [] xref: TAO:0001126 xref: ZFIN:ZDB-ANAT-050228-39 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004879 ! marginal zone of embryo [Term] id: ZFA:0001129 name: pharyngeal pouches 2-6 (zebrafish) namespace: zebrafish_anatomy synonym: "pharyngeal pouches 2-6" EXACT PLURAL [] xref: TAO:0001129 xref: ZFIN:ZDB-ANAT-050228-41 is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: ZFA:0001137 name: ventral tooth row (zebrafish) namespace: zebrafish_anatomy def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [ZFIN:curator] synonym: "ventral tooth rows" EXACT PLURAL [] xref: TAO:0001137 xref: ZFIN:ZDB-ANAT-050228-49 is_a: UBERON:0009678 ! tooth row [Term] id: ZFA:0001139 name: mediodorsal tooth row (zebrafish) namespace: zebrafish_anatomy def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [ZFIN:curator] synonym: "mediodorsal tooth rows" EXACT PLURAL [] xref: TAO:0001139 xref: ZFIN:ZDB-ANAT-050228-50 is_a: UBERON:0009678 ! tooth row [Term] id: ZFA:0001140 name: dorsal tooth row (zebrafish) namespace: zebrafish_anatomy def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [ZFIN:curator] synonym: "dorsal tooth rows" EXACT PLURAL [] xref: TAO:0001140 xref: ZFIN:ZDB-ANAT-050228-51 is_a: UBERON:0009678 ! tooth row [Term] id: ZFA:0001141 name: tooth 1V (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row." [ZFIN:curator] xref: TAO:0001141 xref: ZFIN:ZDB-ANAT-050228-52 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001137 ! ventral tooth row (zebrafish) [Term] id: ZFA:0001142 name: tooth 5V (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row." [ZFIN:curator] xref: TAO:0001142 xref: ZFIN:ZDB-ANAT-050228-53 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001137 ! ventral tooth row (zebrafish) [Term] id: ZFA:0001143 name: tooth 4V (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row." [ZFIN:curator] xref: TAO:0001143 xref: ZFIN:ZDB-ANAT-050228-54 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001137 ! ventral tooth row (zebrafish) [Term] id: ZFA:0001144 name: tooth 2V (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row." [ZFIN:curator] xref: TAO:0001144 xref: ZFIN:ZDB-ANAT-050228-55 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001137 ! ventral tooth row (zebrafish) [Term] id: ZFA:0001145 name: tooth 3V (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row." [ZFIN:curator] xref: TAO:0001145 xref: ZFIN:ZDB-ANAT-050228-56 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001137 ! ventral tooth row (zebrafish) [Term] id: ZFA:0001146 name: tooth 1MD (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row." [ZFIN:curator] xref: TAO:0001146 xref: ZFIN:ZDB-ANAT-050228-57 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001139 ! mediodorsal tooth row (zebrafish) [Term] id: ZFA:0001147 name: tooth 2MD (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row." [ZFIN:curator] xref: TAO:0001147 xref: ZFIN:ZDB-ANAT-050228-58 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001139 ! mediodorsal tooth row (zebrafish) [Term] id: ZFA:0001148 name: tooth 1D (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row." [ZFIN:curator] xref: TAO:0001148 xref: ZFIN:ZDB-ANAT-050228-59 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001140 ! dorsal tooth row (zebrafish) [Term] id: ZFA:0001150 name: tooth 2D (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row." [ZFIN:curator] xref: TAO:0001150 xref: ZFIN:ZDB-ANAT-050228-60 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001140 ! dorsal tooth row (zebrafish) [Term] id: ZFA:0001151 name: tooth 4MD (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row." [ZFIN:curator] xref: TAO:0001151 xref: ZFIN:ZDB-ANAT-050228-61 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001139 ! mediodorsal tooth row (zebrafish) [Term] id: ZFA:0001152 name: tooth 3MD (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row." [ZFIN:curator] xref: TAO:0001152 xref: ZFIN:ZDB-ANAT-050228-62 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of ZFA:0001139 ! mediodorsal tooth row (zebrafish) [Term] id: ZFA:0001154 name: anal fin musculature (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001154 xref: ZFIN:ZDB-ANAT-050228-64 is_a: UBERON:0007271 ! limb/fin musculature relationship: part_of ZFA:0001162 ! anal fin (zebrafish) [Term] id: ZFA:0001156 name: posterior lateral line placode (zebrafish) namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the posterior lateral line." [ZFIN:curator] synonym: "posterior lateral line placodes" EXACT PLURAL [] xref: TAO:0001156 xref: ZFIN:ZDB-ANAT-050228-66 is_a: UBERON:0003067 ! dorsolateral placode relationship: part_of ZFA:0001471 ! posterior lateral line system (zebrafish) [Term] id: ZFA:0001157 name: posterior lateral line primordium (zebrafish) namespace: zebrafish_anatomy def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail." [ZFIN:ZDB-PUB-010705-16] synonym: "posterior lateral line primordia" EXACT PLURAL [] xref: TAO:0001157 xref: ZFIN:ZDB-ANAT-050228-67 is_a: ZFA:0000228 ! lateral line primordium (zebrafish) relationship: develops_from ZFA:0001156 ! posterior lateral line placode (zebrafish) relationship: part_of ZFA:0001471 ! posterior lateral line system (zebrafish) [Term] id: ZFA:0001160 name: adult namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-050228-9 [Term] id: ZFA:0001162 name: anal fin (zebrafish) namespace: zebrafish_anatomy def: "Median fin that is located posterior to the anus." [TAO:curator] xref: TAO:0001162 xref: ZFIN:ZDB-ANAT-050420-1 is_a: ZFA:0005597 ! median fin (zebrafish) relationship: develops_from ZFA:0001069 ! ventral fin fold (zebrafish) relationship: part_of UBERON:0007812 ! post-anal tail [Term] id: ZFA:0001163 name: supraneural 7 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural located between vertebra 6 and 7." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001163 xref: ZFIN:ZDB-ANAT-050420-10 is_a: ZFA:0001397 ! post-Weberian supraneural (zebrafish) [Term] id: ZFA:0001164 name: supraneural 6 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural located between vertebra 5 and 6." [ZFIN:ZDB-PUB-031103-13] synonym: "sn6" EXACT [] xref: TAO:0001164 xref: ZFIN:ZDB-ANAT-050420-11 is_a: ZFA:0001397 ! post-Weberian supraneural (zebrafish) [Term] id: ZFA:0001165 name: supraneural 5 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural located between vertebra 4 and 5." [ZDB:ZDB-PUB-031103-13] synonym: "sn5" EXACT [] xref: TAO:0001165 xref: ZFIN:ZDB-ANAT-050420-12 is_a: ZFA:0001397 ! post-Weberian supraneural (zebrafish) [Term] id: ZFA:0001166 name: supraneural 9 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural located between vertebra 8 and 9." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001166 xref: ZFIN:ZDB-ANAT-050420-13 is_a: ZFA:0001397 ! post-Weberian supraneural (zebrafish) [Term] id: ZFA:0001169 name: vertebra 3 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 2." [TAO:curator] xref: TAO:0001169 xref: ZFIN:ZDB-ANAT-050420-16 is_a: ZFA:0001190 ! Weberian vertebra (zebrafish) [Term] id: ZFA:0001170 name: vertebra 4 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 3." [TAO:curator] xref: TAO:0001170 xref: ZFIN:ZDB-ANAT-050420-17 is_a: ZFA:0001190 ! Weberian vertebra (zebrafish) [Term] id: ZFA:0001171 name: os suspensorium (zebrafish) namespace: zebrafish_anatomy def: "Separate ossification from the parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. Often termed a fifth Weberian ossicle." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001171 xref: ZFIN:ZDB-ANAT-050420-18 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0000461 ! Weberian ossicle (zebrafish) relationship: part_of ZFA:0001170 ! vertebra 4 (zebrafish) [Term] id: ZFA:0001172 name: roofing cartilage (zebrafish) namespace: zebrafish_anatomy def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001172 xref: ZFIN:ZDB-ANAT-050420-19 is_a: ZFA:0001457 ! postcranial axial cartilage (zebrafish) relationship: part_of ZFA:0001191 ! supraneural 2 (zebrafish) relationship: part_of ZFA:0001192 ! supraneural 3 (zebrafish) [Term] id: ZFA:0001179 name: epidermal superficial stratum (zebrafish) namespace: zebrafish_anatomy def: "The outer layer of the epidermis. The living cells form single cell layer, the outer surface of which is ornamented with microridges. Theseouter epidermal cells are not renewed periodically, but are individually replaced when dead." [ZFIN:ZDB-PUB-040726-12] xref: TAO:0001179 xref: ZFIN:ZDB-ANAT-050420-25 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0003055 ! periderm relationship: part_of UBERON:0001003 ! epidermis [Term] id: ZFA:0001181 name: epidermal intermediate stratum (zebrafish) namespace: zebrafish_anatomy def: "The tissue which lies between the basal stratum and the superficial stratum. This layer is composed of a variable number of cell layers which contain mucous goblet cells, club cells and sensory cells. Most of the cells of this region are undifferentiated. They serve as a reservoir to replace dead cells in any of the epidermis regions." [ZFIN:ZDB-PUB-040726-12] xref: TAO:0001181 xref: ZFIN:ZDB-ANAT-050420-27 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001003 ! epidermis [Term] id: ZFA:0001183 name: dermal superficial region (zebrafish) namespace: zebrafish_anatomy def: "Outer portion of the dermis composed of a loose collagenous matrix housing numerous fibroblasts, nerves, some pigment cells, and scales. Scale development takes place in this layer of the dermis." [ZFIN:ZDB-PUB-040726-12] synonym: "stratum laxum" EXACT [] xref: TAO:0001183 xref: ZFIN:ZDB-ANAT-050420-29 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002067 ! dermis [Term] id: ZFA:0001186 name: collagenous dermal stroma (zebrafish) namespace: zebrafish_anatomy def: "Acellular anatomical structure that is a layer of collagen fibrils in the immature integument in a subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region." [ZFIN:ZDB-PUB-040726-12] synonym: "primary dermal stroma" EXACT [] xref: TAO:0001186 xref: ZFIN:ZDB-ANAT-050420-31 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0002067 ! dermis [Term] id: ZFA:0001188 name: Weberian apparatus (zebrafish) namespace: zebrafish_anatomy def: "The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swim bladder to the inner ear (Alexander, 1962)." [ZFIN:curator] xref: TAO:0001188 xref: ZFIN:ZDB-ANAT-050420-4 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001130 ! vertebral column [Term] id: ZFA:0001190 name: Weberian vertebra (zebrafish) namespace: zebrafish_anatomy def: "The first four vertebrae, which are part of the Weberian apparatus." [ZFIN:curator] synonym: "Weberian vertebrae" EXACT PLURAL [] xref: TAO:0001190 xref: ZFIN:ZDB-ANAT-050420-6 is_a: ZFA:0000263 ! precaudal vertebra (zebrafish) relationship: part_of ZFA:0001188 ! Weberian apparatus (zebrafish) [Term] id: ZFA:0001191 name: supraneural 2 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal." [ZFIN:curator] synonym: "small supraneural" EXACT [] synonym: "sn2" EXACT [] xref: TAO:0001191 xref: ZFIN:ZDB-ANAT-050420-7 is_a: ZFA:0000442 ! supraneural (zebrafish) relationship: part_of ZFA:0001363 ! neural complex (zebrafish) [Term] id: ZFA:0001192 name: supraneural 3 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface." [ZFIN:curator] synonym: "large supraneural" EXACT [] synonym: "sn3" EXACT [] xref: TAO:0001192 xref: ZFIN:ZDB-ANAT-050420-8 is_a: ZFA:0000442 ! supraneural (zebrafish) relationship: part_of ZFA:0001363 ! neural complex (zebrafish) [Term] id: ZFA:0001193 name: supraneural 8 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural located between vertebra 7 and 8." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001193 xref: ZFIN:ZDB-ANAT-050420-9 is_a: ZFA:0001397 ! post-Weberian supraneural (zebrafish) [Term] id: ZFA:0001196 name: pars tuberalis namespace: zebrafish_anatomy is_obsolete: true comment: This structure does not exist in Zebrafish. Consider proximal pars anterior ZFA:0005581. xref: TAO:0001196 xref: ZFIN:ZDB-ANAT-050711-11 [Term] id: ZFA:0001200 name: corpuscles of Stannius (zebrafish) namespace: zebrafish_anatomy def: "Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism." [ZFIN:curator] xref: TAO:0001200 xref: ZFIN:ZDB-ANAT-050711-15 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000080 ! mesonephros [Term] id: ZFA:0001201 name: ventral lateral mesoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001201 xref: ZFIN:ZDB-ANAT-050711-16 is_a: UBERON:0000926 ! mesoderm relationship: part_of ZFA:0000083 ! ventral mesoderm (zebrafish) [Term] id: ZFA:0001220 name: copula (zebrafish) namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials." [ZFIN:curator] synonym: "copulae" EXACT PLURAL [] xref: TAO:0001220 xref: ZFIN:ZDB-ANAT-050711-33 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001221 name: copula 1 (zebrafish) namespace: zebrafish_anatomy def: "Copula that is ventral, median, and associated with pharyngeal arches 3-5. A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials." [ZFIN:curator] xref: TAO:0001221 xref: ZFIN:ZDB-ANAT-050711-34 is_a: ZFA:0001220 ! copula (zebrafish) [Term] id: ZFA:0001222 name: copula 2 (zebrafish) namespace: zebrafish_anatomy def: "Copula that is ventral, median, and associated with pharyngeal arches 6-7. A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials." [ZFIN:curator] xref: TAO:0001222 xref: ZFIN:ZDB-ANAT-050711-35 is_a: ZFA:0001220 ! copula (zebrafish) [Term] id: ZFA:0001223 name: basibranchial 1 (zebrafish) namespace: zebrafish_anatomy def: "Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm)." [ZFIN:curator] xref: TAO:0001223 xref: ZFIN:ZDB-ANAT-050711-36 is_a: UBERON:0004740 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 (zebrafish) [Term] id: ZFA:0001224 name: basibranchial 2 (zebrafish) namespace: zebrafish_anatomy def: "Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm). It is the first of the three basibranchials to ossify." [ZFIN:curator] xref: TAO:0001224 xref: ZFIN:ZDB-ANAT-050711-37 is_a: UBERON:0004740 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 (zebrafish) [Term] id: ZFA:0001225 name: basibranchial 3 (zebrafish) namespace: zebrafish_anatomy def: "Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials, anterior to the third hypobranchials (7.6 mm) and associated with pharyngeal arch 5. Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult." [ZFIN:curator] xref: TAO:0001225 xref: ZFIN:ZDB-ANAT-050711-38 is_a: UBERON:0004740 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 (zebrafish) [Term] id: ZFA:0001226 name: basibranchial 4 (zebrafish) namespace: zebrafish_anatomy def: "Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials." [ZFIN:curator] xref: TAO:0001226 xref: ZFIN:ZDB-ANAT-050711-39 is_a: UBERON:0004740 ! basibranchial relationship: develops_from ZFA:0001222 ! copula 2 (zebrafish) [Term] id: ZFA:0001228 name: pharyngeal arch 3 skeleton (zebrafish) namespace: zebrafish_anatomy synonym: "branchial arch 1 skeleton" EXACT [] synonym: "gill arch 1 skeleton" EXACT [] synonym: "visceral arch 3 skeleton" EXACT [] xref: TAO:0001228 xref: ZFIN:ZDB-ANAT-050711-40 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003114 ! pharyngeal arch 3 relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001229 name: pharyngeal arch 7 skeleton (zebrafish) namespace: zebrafish_anatomy synonym: "branchial arch 5 skeleton" EXACT [] synonym: "gill arch 5 skeleton" EXACT [] synonym: "visceral arch 7 skeleton" EXACT [] xref: TAO:0001229 xref: ZFIN:ZDB-ANAT-050711-41 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton relationship: part_of ZFA:0001610 ! pharyngeal arch 7 (zebrafish) [Term] id: ZFA:0001230 name: pharyngeal arch 6 skeleton (zebrafish) namespace: zebrafish_anatomy synonym: "branchial arch 4 skeleton" EXACT [] synonym: "gill arch 4 skeleton" EXACT [] synonym: "visceral arch 6 skeleton" EXACT [] xref: TAO:0001230 xref: ZFIN:ZDB-ANAT-050711-42 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003117 ! pharyngeal arch 6 relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001231 name: pharyngeal arch 4 skeleton (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001231 xref: ZFIN:ZDB-ANAT-050711-43 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003115 ! pharyngeal arch 4 relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001232 name: pharyngeal arch 5 skeleton (zebrafish) namespace: zebrafish_anatomy synonym: "branchial arch 3 skeleton" EXACT [] synonym: "gill arch 3 skeleton" EXACT [] synonym: "visceral arch 5 skeleton" EXACT [] xref: TAO:0001232 xref: ZFIN:ZDB-ANAT-050711-44 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003116 ! pharyngeal arch 5 relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001233 name: hypobranchial 1 bone (zebrafish) namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [ZFIN:curator] synonym: "hypobranchial 1 bones" EXACT PLURAL [] xref: TAO:0001233 xref: ZFIN:ZDB-ANAT-050711-45 is_a: ZFA:0000363 ! hypobranchial bone (zebrafish) relationship: develops_from ZFA:0001524 ! hypobranchial 1 cartilage (zebrafish) relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton (zebrafish) [Term] id: ZFA:0001234 name: hypobranchial 4 bone (zebrafish) namespace: zebrafish_anatomy def: "Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial." [ZFIN:curator] synonym: "hypobranchial 4 bones" EXACT PLURAL [] xref: TAO:0001234 xref: ZFIN:ZDB-ANAT-050711-46 is_a: ZFA:0000363 ! hypobranchial bone (zebrafish) relationship: develops_from ZFA:0001523 ! hypobranchial 4 cartilage (zebrafish) relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton (zebrafish) [Term] id: ZFA:0001235 name: hypobranchial 3 bone (zebrafish) namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [ZFIN:curator] synonym: "hypobranchial 3 bones" EXACT PLURAL [] xref: TAO:0001235 xref: ZFIN:ZDB-ANAT-050711-47 is_a: ZFA:0000363 ! hypobranchial bone (zebrafish) relationship: develops_from ZFA:0001526 ! hypobranchial 3 cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001236 name: hypobranchial 2 bone (zebrafish) namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [ZFIN:curator] synonym: "hypobranchial 2 bones" EXACT PLURAL [] xref: TAO:0001236 xref: ZFIN:ZDB-ANAT-050711-48 is_a: ZFA:0000363 ! hypobranchial bone (zebrafish) relationship: develops_from ZFA:0001525 ! hypobranchial 2 cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001237 name: ceratobranchial 1 bone (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [ZFIN:curator] xref: TAO:0001237 xref: ZFIN:ZDB-ANAT-050711-49 is_a: ZFA:0000488 ! ceratobranchial bone (zebrafish) relationship: develops_from ZFA:0001520 ! ceratobranchial 1 cartilage (zebrafish) relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton (zebrafish) [Term] id: ZFA:0001239 name: ceratobranchial 5 bone (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. Ceratobranchial 5 ossifies before ceratobranchials 1-4. In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined." [ZFIN:curator] xref: TAO:0001239 xref: ZFIN:ZDB-ANAT-050711-50 is_a: ZFA:0000488 ! ceratobranchial bone (zebrafish) relationship: develops_from ZFA:0001521 ! ceratobranchial 5 cartilage (zebrafish) relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton (zebrafish) [Term] id: ZFA:0001240 name: ceratobranchial 4 bone (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone and medially with copula 2. Gill rakers are present on the anterior and posterior margins." [ZFIN:curator] xref: TAO:0001240 xref: ZFIN:ZDB-ANAT-050711-51 is_a: ZFA:0000488 ! ceratobranchial bone (zebrafish) relationship: develops_from ZFA:0001519 ! ceratobranchial 4 cartilage (zebrafish) relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton (zebrafish) [Term] id: ZFA:0001241 name: ceratobranchial 3 bone (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [ZFIN:curator] xref: TAO:0001241 xref: ZFIN:ZDB-ANAT-050711-52 is_a: ZFA:0000488 ! ceratobranchial bone (zebrafish) relationship: develops_from ZFA:0001518 ! ceratobranchial 3 cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001242 name: ceratobranchial 2 bone (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [ZFIN:curator] xref: TAO:0001242 xref: ZFIN:ZDB-ANAT-050711-53 is_a: ZFA:0000488 ! ceratobranchial bone (zebrafish) relationship: develops_from ZFA:0001517 ! ceratobranchial 2 cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001243 name: epibranchial 1 bone (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1." [ZFIN:curator] xref: TAO:0001243 xref: ZFIN:ZDB-ANAT-050711-54 is_a: ZFA:0000658 ! epibranchial bone (zebrafish) relationship: develops_from ZFA:0001528 ! epibranchial 1 cartilage (zebrafish) relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton (zebrafish) [Term] id: ZFA:0001244 name: epibranchial 5 (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial 5, to the cartilaginous junction of ceratobranchial 4 and epibranchial 4." [ZFIN:curator] synonym: "interbranchial IV" EXACT [] xref: TAO:0001244 xref: ZFIN:ZDB-ANAT-050711-55 is_a: ZFA:0001527 ! epibranchial cartilage (zebrafish) relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton (zebrafish) [Term] id: ZFA:0001245 name: epibranchial 4 bone (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. The narrow end of epibranchial 4 is slightly flared, and it articulates with cartilaginous pharyngobranchial 4." [ZFIN:curator] xref: TAO:0001245 xref: ZFIN:ZDB-ANAT-050711-56 is_a: ZFA:0000658 ! epibranchial bone (zebrafish) relationship: develops_from ZFA:0001531 ! epibranchial 4 cartilage (zebrafish) relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton (zebrafish) [Term] id: ZFA:0001246 name: epibranchial 2 bone (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1." [ZFIN:curator] xref: TAO:0001246 xref: ZFIN:ZDB-ANAT-050711-57 is_a: ZFA:0000658 ! epibranchial bone (zebrafish) relationship: develops_from ZFA:0001530 ! epibranchial 2 cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001247 name: epibranchial 3 bone (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3." [ZFIN:curator] synonym: "infrapharyngobranchial 3" EXACT [] xref: TAO:0001247 xref: ZFIN:ZDB-ANAT-050711-58 is_a: ZFA:0000658 ! epibranchial bone (zebrafish) relationship: develops_from ZFA:0001529 ! epibranchial 3 cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001248 name: pharyngobranchial 1 namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-050711-59 [Term] id: ZFA:0001250 name: pharyngobranchial 2 bone (zebrafish) namespace: zebrafish_anatomy def: "Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage & Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3. It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2. In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it." [ZFIN:curator] synonym: "infrapharyngobranchial 2" EXACT [] xref: TAO:0001250 xref: ZFIN:ZDB-ANAT-050711-60 is_a: ZFA:0000527 ! pharyngobranchial bone (zebrafish) relationship: develops_from ZFA:0001536 ! pharyngobranchial 2 cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001251 name: pharyngobranchial 4 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Pharyngobranchial cartilage which forms in close proximity to or fused with pharyngobranchial 3; may not be distinguishable as a separate element in the adult. Remains cartilaginous." [ZFIN:curator] synonym: "infrapharyngobranchial 4 cartilage" EXACT [] synonym: "infrapharyngobranchials" EXACT [] xref: TAO:0001251 xref: ZFIN:ZDB-ANAT-050711-61 is_a: ZFA:0001533 ! pharyngobranchial cartilage (zebrafish) relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton (zebrafish) [Term] id: ZFA:0001252 name: pharyngobranchial 3 bone (zebrafish) namespace: zebrafish_anatomy def: "Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3." [ZFIN:curator] synonym: "pharyngobranchial 3 bones" EXACT PLURAL [] xref: TAO:0001252 xref: ZFIN:ZDB-ANAT-050711-62 is_a: ZFA:0000527 ! pharyngobranchial bone (zebrafish) relationship: develops_from ZFA:0001534 ! pharyngobranchial 3 cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001253 name: pharyngobranchial 2+3 namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-050711-63 [Term] id: ZFA:0001254 name: cranial motoneurons namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-050711-64 [Term] id: ZFA:0001256 name: lateral floor plate (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is the lateral part of the floor plate." [ZFIN:curator] xref: TAO:0001256 xref: ZFIN:ZDB-ANAT-050711-66 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003079 ! floor plate [Term] id: ZFA:0001257 name: medial floor plate (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is the medial part of the floor plate and is located adjacent to the notochord." [ZFIN:curator] xref: TAO:0001257 xref: ZFIN:ZDB-ANAT-050711-67 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003079 ! floor plate [Term] id: ZFA:0001259 name: forebrain ventricle (zebrafish) namespace: zebrafish_anatomy synonym: "forebrain vesicle" EXACT [] synonym: "prosencephalic ventricle" EXACT [] xref: TAO:0001259 xref: ZFIN:ZDB-ANAT-050711-69 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001890 ! forebrain relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: ZFA:0001263 name: ovarian follicle stage I (zebrafish) namespace: zebrafish_anatomy def: "Stage I follicles (less than 140 microns) are primary growth stage." [ZFIN:ZDB-PUB-961014-1020] synonym: "previtillogenic ovarian follicle" EXACT [] xref: TAO:0001263 xref: ZFIN:ZDB-ANAT-050711-72 is_a: UBERON:0001305 ! ovarian follicle [Term] id: ZFA:0001265 name: ovarian follicle stage II (zebrafish) namespace: zebrafish_anatomy def: "Stage II follicles (140-340 microns) are cortical alveolus stage." [ZFIN:ZDB-PUB-961014-1020] synonym: "ovarian follicles stage II" EXACT PLURAL [] xref: TAO:0001265 xref: ZFIN:ZDB-ANAT-050711-74 is_a: UBERON:0001305 ! ovarian follicle [Term] id: ZFA:0001266 name: ovarian follicle stage III (zebrafish) namespace: zebrafish_anatomy def: "Stage III (340-690 microns) are vitellogenesis." [ZFIN:ZDB-PUB-961014-1020] synonym: "ovarian follicles stage III" EXACT PLURAL [] xref: TAO:0001266 xref: ZFIN:ZDB-ANAT-050711-75 is_a: UBERON:0001305 ! ovarian follicle [Term] id: ZFA:0001269 name: regenerating fin (zebrafish) namespace: zebrafish_anatomy def: "Fin undergoing the process of regeneration." [ZFIN:curator] synonym: "regenerating fins" EXACT PLURAL [] xref: TAO:0001269 xref: ZFIN:ZDB-ANAT-050711-78 is_a: UBERON:0008897 ! fin [Term] id: ZFA:0001274 name: coronomeckelian (zebrafish) namespace: zebrafish_anatomy def: "The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm). In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage." [ZFIN:curator] synonym: "coronoid" RELATED [] synonym: "sesamoid articular" EXACT [] xref: TAO:0001274 xref: ZFIN:ZDB-ANAT-050711-82 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0001275 name: mentomeckelian namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-050711-83 [Term] id: ZFA:0001277 name: anterior chamber swim bladder (zebrafish) namespace: zebrafish_anatomy def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the ductus communicans." [ZFIN:ZDB-PUB-060306-11] xref: TAO:0001277 xref: ZFIN:ZDB-ANAT-060816-3 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from ZFA:0005337 ! anterior swim bladder bud (zebrafish) relationship: part_of UBERON:0006860 ! swim bladder [Term] id: ZFA:0001278 name: posterior chamber swim bladder (zebrafish) namespace: zebrafish_anatomy def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the ductus communicans. This chamber corresponds to the swim bladder found in larval fish." [ZFIN:ZDB-PUB-060306-11] xref: TAO:0001278 xref: ZFIN:ZDB-ANAT-060816-4 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006860 ! swim bladder [Term] id: ZFA:0001279 name: branchiostegal ray 1 (zebrafish) namespace: zebrafish_anatomy def: "Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL)." [ZFIN:curator] synonym: "branchiostegal rays 1" EXACT PLURAL [] xref: TAO:0001279 xref: ZFIN:ZDB-ANAT-050711-87 is_a: ZFA:0000476 ! branchiostegal ray (zebrafish) [Term] id: ZFA:0001280 name: branchiostegal ray 3 (zebrafish) namespace: zebrafish_anatomy def: "Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL)." [ZFIN:curator] synonym: "branchiostegal rays 3" EXACT PLURAL [] xref: TAO:0001280 xref: ZFIN:ZDB-ANAT-050711-88 is_a: ZFA:0000476 ! branchiostegal ray (zebrafish) [Term] id: ZFA:0001281 name: branchiostegal ray 2 (zebrafish) namespace: zebrafish_anatomy def: "Branchiostegal ray 2 is between rays 1 and 3 and ossifies second." [ZFIN:curator] synonym: "branchiostegal rays 2" EXACT PLURAL [] xref: TAO:0001281 xref: ZFIN:ZDB-ANAT-050711-89 is_a: ZFA:0000476 ! branchiostegal ray (zebrafish) [Term] id: ZFA:0001285 name: intersegmental vessel (zebrafish) namespace: zebrafish_anatomy synonym: "intersegmental vessels" EXACT PLURAL [] synonym: "intersomitic vessels" EXACT [] synonym: "segmental vessel" EXACT [] xref: TAO:0001285 xref: ZFIN:ZDB-ANAT-050915-90 is_a: UBERON:0001981 ! blood vessel relationship: develops_from UBERON:0005805 ! dorsal aorta relationship: part_of UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0010204 ! tail vasculature [Term] id: ZFA:0001286 name: caudal vein plexus (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001286 xref: ZFIN:ZDB-ANAT-050915-91 is_a: UBERON:0010204 ! tail vasculature [Term] id: ZFA:0001292 name: epiphyseal stalk (zebrafish) namespace: zebrafish_anatomy def: "The stalk emanates from the diencephalic roof at a left-of-medial position." [ZFIN:curator] synonym: "pineal stalk" EXACT [] xref: TAO:0001292 xref: ZFIN:ZDB-ANAT-050915-97 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0001359 ! pineal complex (zebrafish) [Term] id: ZFA:0001293 name: posterior kidney (zebrafish) namespace: zebrafish_anatomy synonym: "posterior kidneys" EXACT PLURAL [] xref: TAO:0001293 xref: ZFIN:ZDB-ANAT-050915-98 is_a: UBERON:0003103 ! compound organ relationship: develops_from UBERON:0002120 ! pronephros relationship: part_of UBERON:0000080 ! mesonephros [Term] id: ZFA:0001297 name: vagal placode 1 (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 1." [ZFIN:ZDB-PUB-070122-31] xref: TAO:0001297 xref: ZFIN:ZDB-ANAT-050915-102 is_a: UBERON:0003078 ! epibranchial placode [Term] id: ZFA:0001298 name: vagal placode 2 (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 2." [ZFIN:ZDB-PUB-070122-31] xref: TAO:0001298 xref: ZFIN:ZDB-ANAT-050915-103 is_a: UBERON:0003078 ! epibranchial placode [Term] id: ZFA:0001299 name: vagal placode 3 (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 3." [ZFIN:ZDB-PUB-070122-3] xref: TAO:0001299 xref: ZFIN:ZDB-ANAT-050915-104 is_a: UBERON:0003078 ! epibranchial placode [Term] id: ZFA:0001300 name: vagal placode 4 (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 4." [ZFIN:ZDB-PUB-070122-31] xref: TAO:0001300 xref: ZFIN:ZDB-ANAT-050915-105 is_a: UBERON:0003078 ! epibranchial placode [Term] id: ZFA:0001302 name: vagal ganglion 1 (zebrafish) namespace: zebrafish_anatomy synonym: "gX1" EXACT [] synonym: "nodose ganglion 1" EXACT [] xref: TAO:0001302 xref: ZFIN:ZDB-ANAT-050915-107 is_a: ZFA:0007067 ! vagal ganglion (zebrafish) relationship: develops_from ZFA:0001297 ! vagal placode 1 (zebrafish) [Term] id: ZFA:0001303 name: vagal ganglion 2 (zebrafish) namespace: zebrafish_anatomy synonym: "gX2" EXACT [] synonym: "nodose ganglion 2" EXACT [] xref: TAO:0001303 xref: ZFIN:ZDB-ANAT-050915-108 is_a: ZFA:0007067 ! vagal ganglion (zebrafish) relationship: develops_from ZFA:0001298 ! vagal placode 2 (zebrafish) [Term] id: ZFA:0001304 name: vagal ganglion 3 (zebrafish) namespace: zebrafish_anatomy synonym: "gX3" EXACT [] synonym: "nodose ganglion 3" EXACT [] xref: TAO:0001304 xref: ZFIN:ZDB-ANAT-050915-109 is_a: ZFA:0007067 ! vagal ganglion (zebrafish) relationship: develops_from ZFA:0001299 ! vagal placode 3 (zebrafish) [Term] id: ZFA:0001305 name: vagal ganglion 4 (zebrafish) namespace: zebrafish_anatomy synonym: "gX4" EXACT [] synonym: "nodose ganglion 4" EXACT [] xref: TAO:0001305 xref: ZFIN:ZDB-ANAT-050915-110 is_a: ZFA:0007067 ! vagal ganglion (zebrafish) relationship: develops_from ZFA:0001300 ! vagal placode 4 (zebrafish) [Term] id: ZFA:0001312 name: dorsal anterior lateral line ganglion (zebrafish) namespace: zebrafish_anatomy synonym: "anterodorsal lateral line ganglion" EXACT [] xref: TAO:0001312 xref: ZFIN:ZDB-ANAT-050915-116 is_a: ZFA:0001391 ! anterior lateral line ganglion (zebrafish) relationship: develops_from ZFA:0001316 ! anterior lateral line placode (zebrafish) [Term] id: ZFA:0001313 name: ventral anterior lateral line ganglion (zebrafish) namespace: zebrafish_anatomy synonym: "anteroventral lateral line ganglion" EXACT [] xref: TAO:0001313 xref: ZFIN:ZDB-ANAT-050915-117 is_a: ZFA:0001391 ! anterior lateral line ganglion (zebrafish) relationship: develops_from ZFA:0001316 ! anterior lateral line placode (zebrafish) [Term] id: ZFA:0001314 name: posterior lateral line ganglion (zebrafish) namespace: zebrafish_anatomy def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator] synonym: "posterior lateral line ganglia" EXACT PLURAL [] xref: TAO:0001314 xref: ZFIN:ZDB-ANAT-050915-118 is_a: ZFA:0000120 ! lateral line ganglion (zebrafish) relationship: develops_from ZFA:0001156 ! posterior lateral line placode (zebrafish) [Term] id: ZFA:0001316 name: anterior lateral line placode (zebrafish) namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the anterior lateral line." [ZFIN:curator] synonym: "anterior lateral line placodes" EXACT PLURAL [] xref: TAO:0001316 xref: ZFIN:ZDB-ANAT-050915-119 is_a: UBERON:0003067 ! dorsolateral placode relationship: part_of ZFA:0001468 ! anterior lateral line system (zebrafish) [Term] id: ZFA:0001322 name: dorsoventral diencephalic tract (zebrafish) namespace: zebrafish_anatomy def: "A tract originating in the epiphysis and fasciculating with the tract of the postoptic commissure." [ZFIN:ZDB-PUB-961014-955] synonym: "DVDT" EXACT [] xref: TAO:0001322 xref: ZFIN:ZDB-ANAT-060131-6 is_a: UBERON:0003931 ! diencephalic white matter [Term] id: ZFA:0001324 name: enteric musculature (zebrafish) namespace: zebrafish_anatomy def: "Musculature of the gut." [ZFIN:curator] synonym: "gut musculature" EXACT [] synonym: "tunica muscularis" RELATED [http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] xref: TAO:0001324 xref: ZFIN:ZDB-ANAT-060131-8 is_a: UBERON:0001015 ! musculature relationship: part_of UBERON:0001555 ! digestive tract [Term] id: ZFA:0001333 name: visceral organ namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-060131-13 [Term] id: ZFA:0001335 name: supradorsal (zebrafish) namespace: zebrafish_anatomy def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [ZFIN:curator] synonym: "supradorsals" EXACT PLURAL [] xref: TAO:0001335 xref: ZFIN:ZDB-ANAT-060331-8 is_a: ZFA:0001457 ! postcranial axial cartilage (zebrafish) relationship: part_of UBERON:0003861 ! vertebral arch [Term] id: ZFA:0001339 name: nucleus of the tract of the anterior commissure (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus from which the axons of the anterior commissure originate." [ZFIN:curator] synonym: "ntAC" EXACT [] xref: TAO:0001339 xref: ZFIN:ZDB-ANAT-060131-17 is_a: UBERON:0009663 ! telencephalic nucleus [Term] id: ZFA:0001340 name: nucleus of the tract of the postoptic commissure (zebrafish) namespace: zebrafish_anatomy def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [ZFIN:curator] synonym: "ntPOC" EXACT [] xref: TAO:0001340 xref: ZFIN:ZDB-ANAT-060131-18 is_a: UBERON:0006569 ! diencephalic nucleus [Term] id: ZFA:0001341 name: intervening zone (zebrafish) namespace: zebrafish_anatomy def: "A zone of delayed differentiation at the midbrain hindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates." [ZFIN:ZDB-PUB-030307-1] synonym: "IZ" EXACT [] xref: TAO:0001341 xref: ZFIN:ZDB-ANAT-060131-19 is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from ZFA:0001342 ! presumptive intervening zone (zebrafish) relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary [Term] id: ZFA:0001342 name: presumptive intervening zone (zebrafish) namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the intervening zone." [ZFIN:curator] xref: TAO:0001342 xref: ZFIN:ZDB-ANAT-060131-20 is_a: UBERON:0002050 ! embryonic structure relationship: part_of ZFA:0007023 ! posterior neural keel (zebrafish) [Term] id: ZFA:0001343 name: telencephalon diencephalon boundary (zebrafish) namespace: zebrafish_anatomy def: "Boundary between the telencephalon and diencephalon." [ZFIN:curator] xref: TAO:0001343 xref: ZFIN:ZDB-ANAT-060131-21 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001890 ! forebrain [Term] id: ZFA:0001347 name: stratum fibrosum et griseum superficiale (zebrafish) namespace: zebrafish_anatomy synonym: "strata fibrosum et griseum superficiales" EXACT PLURAL [] xref: TAO:0001347 xref: ZFIN:ZDB-ANAT-060131-25 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: ZFA:0001348 name: stratum marginale (zebrafish) namespace: zebrafish_anatomy synonym: "strata marginale" EXACT PLURAL [] xref: TAO:0001348 xref: ZFIN:ZDB-ANAT-060131-26 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: ZFA:0001349 name: stratum opticum (zebrafish) namespace: zebrafish_anatomy synonym: "strata opticum" EXACT PLURAL [] xref: TAO:0001349 xref: ZFIN:ZDB-ANAT-060131-27 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: ZFA:0001352 name: stratum periventriculare (zebrafish) namespace: zebrafish_anatomy synonym: "strata periventriculare" EXACT PLURAL [] xref: TAO:0001352 xref: ZFIN:ZDB-ANAT-060131-30 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: ZFA:0001357 name: alar plate midbrain region (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is ventrolateral to the roof plate and part of the midbrain." [ISBN:0444517383, ZFIN:ZDB-PUB-961014-576] xref: TAO:0001357 xref: ZFIN:ZDB-ANAT-060131-35 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0007039 ! midbrain neural tube (zebrafish) [Term] id: ZFA:0001359 name: pineal complex (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001359 xref: ZFIN:ZDB-ANAT-060131-37 is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0001899 ! epithalamus [Term] id: ZFA:0001360 name: parapineal organ (zebrafish) namespace: zebrafish_anatomy def: "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry." [ZFIN:ZDB-PUB-030206-1] xref: TAO:0001360 xref: ZFIN:ZDB-ANAT-060131-38 is_a: UBERON:0003103 ! compound organ relationship: part_of ZFA:0001359 ! pineal complex (zebrafish) [Term] id: ZFA:0001361 name: basiventral (zebrafish) namespace: zebrafish_anatomy def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [ZFIN:curator] synonym: "arcualia" RELATED [] xref: TAO:0001361 xref: ZFIN:ZDB-ANAT-060331-10 is_a: ZFA:0001457 ! postcranial axial cartilage (zebrafish) [Term] id: ZFA:0001363 name: neural complex (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0001398 def: "The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae. (Hoffmann and Britz, 2006)," [ZFIN:ZDB-PUB-031103-13] synonym: "Weberian supraneural" EXACT [] xref: TAO:0001363 xref: ZFIN:ZDB-ANAT-060331-12 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of ZFA:0001188 ! Weberian apparatus (zebrafish) [Term] id: ZFA:0001364 name: hemal spine (zebrafish) namespace: zebrafish_anatomy def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [ZFIN:curator] synonym: "haemal spine" EXACT [] xref: TAO:0001364 xref: ZFIN:ZDB-ANAT-060331-13 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0006065 ! hemal arch [Term] id: ZFA:0001366 name: tract of the postoptic commissure (zebrafish) namespace: zebrafish_anatomy synonym: "TPOC" EXACT [] xref: TAO:0001366 xref: ZFIN:ZDB-ANAT-060131-40 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0003936 ! postoptic commissure [Term] id: ZFA:0001371 name: pancreatic system (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001371 xref: ZFIN:ZDB-ANAT-060131-45 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0001007 ! digestive system [Term] id: ZFA:0001373 name: migratory slow muscle precursor cell (zebrafish) namespace: zebrafish_anatomy def: "Cells that initially are located adjacent to the spinal cord and notochord along that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [ZFIN:curator] subset: cell_slim ! cell_slim synonym: "migratory slow muscle precursor cells" EXACT PLURAL [] xref: TAO:0001373 xref: ZFIN:ZDB-ANAT-060131-47 is_a: CL:0000000 ! cell relationship: develops_from ZFA:0000003 ! adaxial cell (zebrafish) relationship: part_of UBERON:0002329 ! somite [Term] id: ZFA:0001378 name: axial hypoblast (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001378 xref: ZFIN:ZDB-ANAT-060131-52 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0003062 ! primitive knot relationship: part_of UBERON:0000089 ! hypoblast [Term] id: ZFA:0001379 name: pharyngeal ectoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001379 xref: ZFIN:ZDB-ANAT-060131-53 is_a: UBERON:0000924 ! ectoderm relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: ZFA:0001382 name: epibranchial uncinate process (zebrafish) namespace: zebrafish_anatomy def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] synonym: "epibranchial uncinate processes" EXACT PLURAL [] xref: TAO:0001382 xref: ZFIN:ZDB-ANAT-060331-16 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0000658 ! epibranchial bone (zebrafish) [Term] id: ZFA:0001386 name: mesoderm pelvic fin bud (zebrafish) namespace: zebrafish_anatomy def: "Mesoderm part of pelvic fin bud." [ZFIN:curator] synonym: "mesoderm pelvic fin buds" EXACT PLURAL [] xref: TAO:0001386 xref: ZFIN:ZDB-ANAT-060131-57 is_a: UBERON:0000926 ! mesoderm relationship: part_of UBERON:0005420 ! hindlimb/pelvic fin bud [Term] id: ZFA:0001388 name: epithelial mesenchymal boundary (zebrafish) namespace: zebrafish_anatomy synonym: "epithelial mesenchymal boundarys" EXACT PLURAL [] xref: TAO:0001388 xref: ZFIN:ZDB-ANAT-060131-59 is_a: UBERON:0006800 ! anatomical line relationship: part_of ZFA:0001269 ! regenerating fin (zebrafish) [Term] id: ZFA:0001389 name: regeneration epithelium (zebrafish) namespace: zebrafish_anatomy synonym: "epidermal cap" EXACT [] synonym: "wound epidermis" EXACT [] synonym: "wound epithelium" EXACT [] xref: TAO:0001389 xref: ZFIN:ZDB-ANAT-060131-60 is_a: UBERON:0000483 ! epithelium relationship: part_of ZFA:0001269 ! regenerating fin (zebrafish) [Term] id: ZFA:0001391 name: anterior lateral line ganglion (zebrafish) namespace: zebrafish_anatomy def: "The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] synonym: "anterior lateral line ganglia" EXACT PLURAL [] xref: TAO:0001391 xref: ZFIN:ZDB-ANAT-060131-62 is_a: ZFA:0000120 ! lateral line ganglion (zebrafish) [Term] id: ZFA:0001392 name: parapophysis 1 (zebrafish) namespace: zebrafish_anatomy def: "Lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996)." [ZFIN:curator] synonym: "basipophysis 1" EXACT [] synonym: "lateral process 1" EXACT [] xref: TAO:0001392 xref: ZFIN:ZDB-ANAT-060331-17 is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:0001092 ! first cervical vertebra [Term] id: ZFA:0001393 name: parapophysis 2 (zebrafish) namespace: zebrafish_anatomy def: "Lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996)." [ZFIN:curator] synonym: "basipophysis" EXACT [] synonym: "lateral process 2" EXACT [] xref: TAO:0001393 xref: ZFIN:ZDB-ANAT-060331-18 is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:0001093 ! second cervical vertebra [Term] id: ZFA:0001394 name: neural arch 3 (zebrafish) namespace: zebrafish_anatomy def: "Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal." [ZFIN:curator] xref: TAO:0001394 xref: ZFIN:ZDB-ANAT-060331-19 is_a: UBERON:0003861 ! vertebral arch relationship: part_of ZFA:0001169 ! vertebra 3 (zebrafish) [Term] id: ZFA:0001395 name: neural arch 4 (zebrafish) namespace: zebrafish_anatomy def: "Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex." [ZFIN:curator] xref: TAO:0001395 xref: ZFIN:ZDB-ANAT-060331-20 is_a: UBERON:0003861 ! vertebral arch relationship: part_of ZFA:0001170 ! vertebra 4 (zebrafish) [Term] id: ZFA:0001396 name: parapophysis/rib (zebrafish) namespace: zebrafish_anatomy def: "The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface." [ZFIN:curator] xref: TAO:0001396 xref: ZFIN:ZDB-ANAT-060331-21 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0001170 ! vertebra 4 (zebrafish) [Term] id: ZFA:0001397 name: post-Weberian supraneural (zebrafish) namespace: zebrafish_anatomy def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish." [ZFIN:ZDB-PUB-031103-13, ZFIN:curator] synonym: "post-Weberian supraneurals" EXACT PLURAL [] xref: TAO:0001397 xref: ZFIN:ZDB-ANAT-060331-22 is_a: ZFA:0000442 ! supraneural (zebrafish) [Term] id: ZFA:0001400 name: ceratohyal cartilage (zebrafish) namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch." [ZFIN:curator] xref: TAO:0001400 xref: ZFIN:ZDB-ANAT-060331-25 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of ZFA:0001402 ! ventral hyoid arch (zebrafish) [Term] id: ZFA:0001401 name: dorsal hyoid arch (zebrafish) namespace: zebrafish_anatomy synonym: "dorsal visceral arch 2" EXACT [] xref: TAO:0001401 xref: ZFIN:ZDB-ANAT-060331-26 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003108 ! suspensorium relationship: part_of UBERON:0005884 ! hyoid arch skeleton [Term] id: ZFA:0001402 name: ventral hyoid arch (zebrafish) namespace: zebrafish_anatomy synonym: "ventral visceral arch 2" EXACT [] xref: TAO:0001402 xref: ZFIN:ZDB-ANAT-060331-27 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0005884 ! hyoid arch skeleton [Term] id: ZFA:0001403 name: supraethmoid (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anteriolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal." [ZFIN:curator] synonym: "supra-ethmoid" RELATED [] xref: TAO:0001403 xref: ZFIN:ZDB-ANAT-060331-28 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003112 ! olfactory region relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0001404 name: preethmoid bone (zebrafish) namespace: zebrafish_anatomy def: "Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [ZFIN:curator] synonym: "pre-ethmoid" EXACT [] synonym: "preethmoid bones" EXACT PLURAL [] xref: TAO:0001404 xref: ZFIN:ZDB-ANAT-060331-29 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001405 ! ethmoid cartilage (zebrafish) relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003112 ! olfactory region [Term] id: ZFA:0001405 name: ethmoid cartilage (zebrafish) namespace: zebrafish_anatomy def: "Bilaterally paired neurocranium cartilage which is initially plate-like and formed from the anterior fusion between the bilaterally paired trabecula cranii. It grows dorsally between the laminae orbitonasales to attain a complex shape." [ZFIN:curator] synonym: "ethmoid plate" EXACT [] xref: TAO:0001405 xref: ZFIN:ZDB-ANAT-060331-30 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0003112 ! olfactory region [Term] id: ZFA:0001406 name: kinethmoid bone (zebrafish) namespace: zebrafish_anatomy def: "Small median unpaired dermal sesamoid bone in the premaxillary-ethmoid ligament between the mesethmoid and the premaxilla that enhances the protractability of the upper jaw. It forms in the premaxillary-ethmoid ligament. The kinethmoid arose de novo in the ancestor of Cypriniformes, the only group within Ostariophysi, in which it is found (Fink and Fink, 1981)." [ZFIN:curator] xref: TAO:0001406 xref: ZFIN:ZDB-ANAT-060331-31 is_a: UBERON:0008907 ! dermal bone relationship: develops_from ZFA:0000585 ! kinethmoid cartilage (zebrafish) relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003112 ! olfactory region relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: ZFA:0001407 name: infraorbital 2 (zebrafish) namespace: zebrafish_anatomy def: "Plate like dermal bone, variable in size, though usually one of the smallest in the series. Bears 2-3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969)." [ZFIN:curator] xref: TAO:0001407 xref: ZFIN:ZDB-ANAT-060331-32 is_a: ZFA:0000376 ! infraorbital (zebrafish) relationship: part_of ZFA:0001649 ! infraorbital series (zebrafish) [Term] id: ZFA:0001408 name: infraorbital 3 (zebrafish) namespace: zebrafish_anatomy def: "Plate like dermal bone, variable in size, but usually largest in the series. Usually fused with IO4 (eg. Opsariichthys, Nelson (1969)). Usually bears 3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969)." [ZFIN:curator] xref: TAO:0001408 xref: ZFIN:ZDB-ANAT-060331-33 is_a: ZFA:0000376 ! infraorbital (zebrafish) relationship: part_of ZFA:0001649 ! infraorbital series (zebrafish) [Term] id: ZFA:0001409 name: infraorbital 4 (zebrafish) namespace: zebrafish_anatomy def: "Plate like dermal bone. Usually fused with infraorbital 3." [ZFIN:curator] xref: TAO:0001409 xref: ZFIN:ZDB-ANAT-060331-34 is_a: ZFA:0000376 ! infraorbital (zebrafish) relationship: part_of ZFA:0001649 ! infraorbital series (zebrafish) [Term] id: ZFA:0001411 name: sclerotic bone (zebrafish) namespace: zebrafish_anatomy def: "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid. The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye." [ZFIN:ZDB-PUB-070629-20, ZFIN:curator] synonym: "scleral ossicle" EXACT [] synonym: "sclerotic bones" EXACT PLURAL [] xref: TAO:0001411 xref: ZFIN:ZDB-ANAT-060331-36 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from ZFA:0001509 ! sclerotic cartilage (zebrafish) relationship: part_of UBERON:0001697 ! orbit relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: ZFA:0001412 name: epiotic (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0000659 def: "Cartilage bone that contacts the pterotic anteriorly, the supraoccipital and parietal dorsally, and the exoccipital ventrally. The epiotic enclose the posterior semicircular canal of the inner ear and contribute to the hind margin of the cranium." [ZFIN:curator] synonym: "epioccipital" EXACT [] xref: TAO:0001412 xref: ZFIN:ZDB-ANAT-060331-37 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003110 ! otic region [Term] id: ZFA:0001415 name: pelvic radial 2 (zebrafish) namespace: zebrafish_anatomy def: "Second radial of the pelvic fin." [ZFIN:curator] synonym: "pelvic radials 2" EXACT PLURAL [] xref: TAO:0001415 xref: ZFIN:ZDB-ANAT-060331-40 is_a: ZFA:0000508 ! pelvic radial (zebrafish) relationship: develops_from ZFA:0001541 ! pelvic radial 2 cartilage (zebrafish) [Term] id: ZFA:0001416 name: pelvic radial 3 (zebrafish) namespace: zebrafish_anatomy def: "Third radial of the pelvic fin." [ZFIN:curator] synonym: "pelvic radials 3" EXACT PLURAL [] xref: TAO:0001416 xref: ZFIN:ZDB-ANAT-060331-41 is_a: ZFA:0000508 ! pelvic radial (zebrafish) relationship: develops_from ZFA:0001540 ! pelvic radial 3 cartilage (zebrafish) [Term] id: ZFA:0001417 name: pelvic radial 1 (zebrafish) namespace: zebrafish_anatomy def: "First radial of the pelvic fin." [ZFIN:curator] synonym: "pelvic radials 1" EXACT PLURAL [] xref: TAO:0001417 xref: ZFIN:ZDB-ANAT-060331-42 is_a: ZFA:0000508 ! pelvic radial (zebrafish) relationship: develops_from ZFA:0001542 ! pelvic radial 1 cartilage (zebrafish) [Term] id: ZFA:0001418 name: dorsal fin lepidotrichium (zebrafish) namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the dorsal fin." [ZFIN:curator] synonym: "dorsal fin lepidotrichia" EXACT PLURAL [] synonym: "dorsal fin ray" EXACT [] xref: TAO:0001418 xref: ZFIN:ZDB-ANAT-060331-43 is_a: ZFA:0001554 ! lepidotrichium (zebrafish) relationship: part_of ZFA:0001124 ! dorsal fin skeleton (zebrafish) [Term] id: ZFA:0001419 name: dorsal fin pterygiophore (zebrafish) namespace: zebrafish_anatomy def: "A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18." [ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin support" EXACT [] xref: TAO:0001419 xref: ZFIN:ZDB-ANAT-060331-44 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of ZFA:0001124 ! dorsal fin skeleton (zebrafish) [Term] id: ZFA:0001420 name: anal fin pterygiophore (zebrafish) namespace: zebrafish_anatomy def: "A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21." [ZFIN:curator] synonym: "anal fin radial" RELATED [] xref: TAO:0001420 xref: ZFIN:ZDB-ANAT-060331-45 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of ZFA:0000167 ! anal fin skeleton (zebrafish) [Term] id: ZFA:0001421 name: anal fin lepidotrichium (zebrafish) namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the anal fin." [ZFIN:curator] synonym: "anal fin lepidotrichia" EXACT PLURAL [] synonym: "anal fin ray" EXACT [] xref: TAO:0001421 xref: ZFIN:ZDB-ANAT-060331-46 is_a: ZFA:0001554 ! lepidotrichium (zebrafish) relationship: part_of ZFA:0000167 ! anal fin skeleton (zebrafish) [Term] id: ZFA:0001422 name: hyosymplectic cartilage (zebrafish) namespace: zebrafish_anatomy def: "Bilaterally paired large cartilage that articulates with the chondrocranium dorsally, the opercle posteriorly, and the palatoquadrate cartilage anteriorly." [ZFIN:curator] synonym: "hyomandibular cartilage" EXACT [] xref: TAO:0001422 xref: ZFIN:ZDB-ANAT-060331-47 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of ZFA:0001401 ! dorsal hyoid arch (zebrafish) [Term] id: ZFA:0001425 name: basal plate cartilage (zebrafish) namespace: zebrafish_anatomy synonym: "basal plate cartilages" EXACT PLURAL [] xref: TAO:0001425 xref: ZFIN:ZDB-ANAT-060331-50 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0009635 ! parachordal cartilage [Term] id: ZFA:0001426 name: posterior naris (zebrafish) namespace: zebrafish_anatomy synonym: "posterior nares" EXACT PLURAL [] xref: TAO:0001426 xref: ZFIN:ZDB-ANAT-060331-51 is_a: UBERON:0000003 ! naris [Term] id: ZFA:0001428 name: olfactory rosette (zebrafish) namespace: zebrafish_anatomy def: "The highly folded olfactory epithelium." [ISBN:9789812388216] comment: Olfactory epithelium may be part of olfactory rosette. nThe epithelium exists before becoming folded into the rosette. synonym: "olfactory rosettes" EXACT PLURAL [] xref: TAO:0001428 xref: ZFIN:ZDB-ANAT-060331-53 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: ZFA:0001430 name: pneumatic duct (zebrafish) namespace: zebrafish_anatomy def: "A duct connecting the esophagus to the posterior chamber of the swim bladder." [ZFIN:ZDB-PUB-060306-11] xref: TAO:0001430 xref: ZFIN:ZDB-ANAT-060816-5 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001043 ! esophagus [Term] id: ZFA:0001431 name: primitive olfactory epithelium (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001431 xref: ZFIN:ZDB-ANAT-060331-55 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0003050 ! olfactory placode [Term] id: ZFA:0001432 name: anterior sclerotic bone (zebrafish) namespace: zebrafish_anatomy def: "Sclerotic bone that is located anterior to the eye." [ZFIN:curator] synonym: "anterior sclerotic bones" EXACT PLURAL [] xref: TAO:0001432 xref: ZFIN:ZDB-ANAT-060331-56 is_a: ZFA:0001411 ! sclerotic bone (zebrafish) [Term] id: ZFA:0001433 name: posterior sclerotic bone (zebrafish) namespace: zebrafish_anatomy def: "Sclerotic bone that is located posterior to the eye." [ZFIN:curator] synonym: "posterior sclerotic bones" EXACT PLURAL [] xref: TAO:0001433 xref: ZFIN:ZDB-ANAT-060331-57 is_a: ZFA:0001411 ! sclerotic bone (zebrafish) [Term] id: ZFA:0001437 name: ductus communicans (zebrafish) namespace: zebrafish_anatomy def: "The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening." [ZFIN:ZDB-PUB-060306-11] xref: TAO:0001437 xref: ZFIN:ZDB-ANAT-060816-6 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0006860 ! swim bladder [Term] id: ZFA:0001450 name: apical ectodermal ridge pelvic fin (zebrafish) namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the pelvic fin." [ZFIN:curator] synonym: "apical ectodermal ridge pelvic fins" EXACT PLURAL [] xref: TAO:0001450 xref: ZFIN:ZDB-ANAT-060816-19 is_a: UBERON:0004356 ! apical ectodermal ridge relationship: develops_from UBERON:0005422 ! posterior limb/fin apical ectodermal ridge relationship: part_of UBERON:0000152 ! pelvic fin [Term] id: ZFA:0001456 name: pectoral fin endoskeletal disc (zebrafish) namespace: zebrafish_anatomy def: "A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998)." [ZFIN:curator] synonym: "fin plate cartilage" EXACT [] xref: TAO:0001456 xref: ZFIN:ZDB-ANAT-060816-25 is_a: UBERON:0007390 ! fore limb/fin cartilage [Term] id: ZFA:0001457 name: postcranial axial cartilage (zebrafish) namespace: zebrafish_anatomy def: "Cartilage which is part of the axial skeleton." [ZFIN:curator] synonym: "postcranial axial cartilages" EXACT PLURAL [] xref: TAO:0001457 xref: ZFIN:ZDB-ANAT-060816-26 is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: ZFA:0001460 name: pharyngeal arch cartilage (zebrafish) namespace: zebrafish_anatomy synonym: "pharyngeal arch cartilages" EXACT PLURAL [] synonym: "splanchnocranium cartilage" EXACT [] xref: TAO:0001460 xref: ZFIN:ZDB-ANAT-060816-29 is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: ZFA:0001462 name: somite border (zebrafish) namespace: zebrafish_anatomy def: "Anatomical surface separating somites." [ZFIN:curator] synonym: "somite border cell" EXACT PLURAL [] synonym: "somite boundary" RELATED [] xref: TAO:0001462 xref: ZFIN:ZDB-ANAT-060816-31 is_a: UBERON:0006984 ! anatomical surface relationship: part_of UBERON:0002329 ! somite [Term] id: ZFA:0001463 name: melanophore stripe (zebrafish) namespace: zebrafish_anatomy def: "Surface structure composed of an array of melanophores arranged in a stripe. Stripes are oriented from rostral to caudal." [ZFIN:curator] synonym: "melanophore stripes" EXACT PLURAL [] xref: TAO:0001463 xref: ZFIN:ZDB-ANAT-060816-32 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002199 ! integument [Term] id: ZFA:0001467 name: pharyngeal mesoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001467 xref: ZFIN:ZDB-ANAT-061101-11 is_a: UBERON:0000926 ! mesoderm relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: ZFA:0001468 name: anterior lateral line system (zebrafish) namespace: zebrafish_anatomy def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] xref: TAO:0001468 xref: ZFIN:ZDB-ANAT-061101-12 is_a: UBERON:0002540 ! lateral line system [Term] id: ZFA:0001470 name: anterior lateral line (zebrafish) namespace: zebrafish_anatomy def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [ZFIN:curator] synonym: "anterior lateral lines" EXACT PLURAL [] xref: TAO:0001470 xref: ZFIN:ZDB-ANAT-061101-14 is_a: UBERON:0010202 ! lateral line relationship: develops_from ZFA:0005117 ! anterior lateral line primordium (zebrafish) relationship: part_of ZFA:0001468 ! anterior lateral line system (zebrafish) [Term] id: ZFA:0001471 name: posterior lateral line system (zebrafish) namespace: zebrafish_anatomy def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] xref: TAO:0001471 xref: ZFIN:ZDB-ANAT-061101-15 is_a: UBERON:0002540 ! lateral line system [Term] id: ZFA:0001472 name: anterior lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the anterior lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast anterior" EXACT [] xref: TAO:0001472 xref: ZFIN:ZDB-ANAT-061101-16 is_a: UBERON:0008904 ! neuromast relationship: part_of ZFA:0001470 ! anterior lateral line (zebrafish) [Term] id: ZFA:0001473 name: deep blastomere (zebrafish) namespace: zebrafish_anatomy def: "Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim synonym: "deep blastomeres" EXACT PLURAL [] xref: TAO:0001473 xref: ZFIN:ZDB-ANAT-061101-17 is_a: ZFA:0000093 ! blastomere (zebrafish) [Term] id: ZFA:0001474 name: presumptive cardinal organ namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-061101-18 [Term] id: ZFA:0001475 name: presumptive organ namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-061101-19 [Term] id: ZFA:0001476 name: presumptive organ system namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-061101-20 [Term] id: ZFA:0001480 name: dorsal anterior lateral line nerve (zebrafish) namespace: zebrafish_anatomy def: "Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts." [ZFIN:ZDB-PUB-000523-3, ZFIN:curator] synonym: "anterodorsal lateral line nerve" EXACT [] synonym: "dorsal anterior lateral line nerves" EXACT PLURAL [] xref: TAO:0001480 xref: ZFIN:ZDB-ANAT-061101-24 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of ZFA:0000425 ! anterior lateral line nerve (zebrafish) [Term] id: ZFA:0001481 name: ventral anterior lateral line nerve (zebrafish) namespace: zebrafish_anatomy def: "Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts." [ZFIN:curator] synonym: "anteroventral lateral line nerve" EXACT [] synonym: "ventral anterior lateral line nerves" EXACT PLURAL [] xref: TAO:0001481 xref: ZFIN:ZDB-ANAT-061101-25 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of ZFA:0000425 ! anterior lateral line nerve (zebrafish) [Term] id: ZFA:0001482 name: middle lateral line nerve (zebrafish) namespace: zebrafish_anatomy def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [ZFIN:curator] synonym: "middle lateral line nerves" EXACT PLURAL [] xref: TAO:0001482 xref: ZFIN:ZDB-ANAT-061101-26 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of ZFA:0000175 ! posterior lateral line nerve (zebrafish) relationship: part_of ZFA:0005114 ! middle lateral line system (zebrafish) [Term] id: ZFA:0001483 name: middle lateral line ganglion (zebrafish) namespace: zebrafish_anatomy def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [ZFIN:curator] synonym: "middle lateral line ganglia" EXACT PLURAL [] xref: TAO:0001483 xref: ZFIN:ZDB-ANAT-061101-27 is_a: ZFA:0000120 ! lateral line ganglion (zebrafish) relationship: part_of ZFA:0005114 ! middle lateral line system (zebrafish) [Term] id: ZFA:0001484 name: superficial blastomere (zebrafish) namespace: zebrafish_anatomy def: "Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim ! cell_slim synonym: "superficial blastomeres" EXACT PLURAL [] xref: TAO:0001484 xref: ZFIN:ZDB-ANAT-061101-28 is_a: ZFA:0000093 ! blastomere (zebrafish) [Term] id: ZFA:0001502 name: epiphyseal bar (zebrafish) namespace: zebrafish_anatomy def: "Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar." [ZFIN:curator] xref: TAO:0001502 xref: ZFIN:ZDB-ANAT-070517-18 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium [Term] id: ZFA:0001504 name: occipital arch cartilage (zebrafish) namespace: zebrafish_anatomy def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [ZFIN:curator] synonym: "occipital arch cartilages" EXACT PLURAL [] xref: TAO:0001504 xref: ZFIN:ZDB-ANAT-070517-20 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium [Term] id: ZFA:0001505 name: taenia marginalis anterior (zebrafish) namespace: zebrafish_anatomy def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate." [ZFIN:curator] synonym: "orbital cartilage" RELATED [] xref: TAO:0001505 xref: ZFIN:ZDB-ANAT-070517-21 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0003111 ! sphenoid region [Term] id: ZFA:0001508 name: trabecula communis (zebrafish) namespace: zebrafish_anatomy def: "Cartilage formed via medial fusion between bilaterally paired trabecula cranii." [ZFIN:curator] synonym: "trabecular bar" EXACT [] xref: TAO:0001508 xref: ZFIN:ZDB-ANAT-070517-24 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0005945 ! neurocranial trabecula [Term] id: ZFA:0001509 name: sclerotic cartilage (zebrafish) namespace: zebrafish_anatomy def: "Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye. It lies between t lies between the sclera and the optic choroid." [ZFIN:ZDB-PUB-070629-20] synonym: "scleral cartilage" RELATED [] synonym: "sclerotic cartilages" EXACT PLURAL [] xref: TAO:0001509 xref: ZFIN:ZDB-ANAT-070517-25 is_a: UBERON:0003932 ! chondrocranium cartilage [Term] id: ZFA:0001510 name: basihyal cartilage (zebrafish) namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. It chondrifies between the anterior tips of the ceratohyal cartilages, anterior to the first copula." [ZFIN:curator] xref: TAO:0001510 xref: ZFIN:ZDB-ANAT-070517-26 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of ZFA:0001402 ! ventral hyoid arch (zebrafish) [Term] id: ZFA:0001515 name: taenia marginalis posterior (zebrafish) namespace: zebrafish_anatomy def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [ZFIN:curator] synonym: "orbital cartilage" RELATED [] xref: TAO:0001515 xref: ZFIN:ZDB-ANAT-070928-117 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0003111 ! sphenoid region [Term] id: ZFA:0001516 name: ceratobranchial cartilage (zebrafish) namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [ZFIN:curator] synonym: "ceratobranchial cartilages" EXACT PLURAL [] xref: TAO:0001516 xref: ZFIN:ZDB-ANAT-070928-118 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001517 name: ceratobranchial 2 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] xref: TAO:0001517 xref: ZFIN:ZDB-ANAT-070928-119 is_a: ZFA:0001516 ! ceratobranchial cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001518 name: ceratobranchial 3 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] xref: TAO:0001518 xref: ZFIN:ZDB-ANAT-070928-120 is_a: ZFA:0001516 ! ceratobranchial cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001519 name: ceratobranchial 4 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] xref: TAO:0001519 xref: ZFIN:ZDB-ANAT-070928-121 is_a: ZFA:0001516 ! ceratobranchial cartilage (zebrafish) relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton (zebrafish) [Term] id: ZFA:0001520 name: ceratobranchial 1 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that forms between hypobranchial 1 and epibranchial 1." [TAO:curator] xref: TAO:0001520 xref: ZFIN:ZDB-ANAT-070928-122 is_a: ZFA:0001516 ! ceratobranchial cartilage (zebrafish) relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton (zebrafish) [Term] id: ZFA:0001521 name: ceratobranchial 5 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage." [ZFIN:curator] xref: TAO:0001521 xref: ZFIN:ZDB-ANAT-070928-123 is_a: ZFA:0001516 ! ceratobranchial cartilage (zebrafish) relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton (zebrafish) [Term] id: ZFA:0001522 name: hypobranchial cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages." [ZFIN:curator] synonym: "hypobranchial cartilages" EXACT PLURAL [] xref: TAO:0001522 xref: ZFIN:ZDB-ANAT-070928-124 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001523 name: hypobranchial 4 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4." [ZFIN:curator] synonym: "hypobranchial 4 cartilages" EXACT PLURAL [] xref: TAO:0001523 xref: ZFIN:ZDB-ANAT-070928-125 is_a: ZFA:0001522 ! hypobranchial cartilage (zebrafish) relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton (zebrafish) [Term] id: ZFA:0001524 name: hypobranchial 1 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1." [ZFIN:curator] synonym: "hypobranchial 1 cartilages" EXACT PLURAL [] xref: TAO:0001524 xref: ZFIN:ZDB-ANAT-070928-126 is_a: ZFA:0001522 ! hypobranchial cartilage (zebrafish) relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton (zebrafish) [Term] id: ZFA:0001525 name: hypobranchial 2 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1." [ZFIN:curator] synonym: "hypobranchial 2 cartilages" EXACT PLURAL [] xref: TAO:0001525 xref: ZFIN:ZDB-ANAT-070928-127 is_a: ZFA:0001522 ! hypobranchial cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001526 name: hypobranchial 3 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1." [ZFIN:curator] synonym: "hypobranchial 3 cartilages" EXACT PLURAL [] xref: TAO:0001526 xref: ZFIN:ZDB-ANAT-070928-128 is_a: ZFA:0001522 ! hypobranchial cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001527 name: epibranchial cartilage (zebrafish) namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone." [TAO:curator] synonym: "epibranchial cartilages" EXACT PLURAL [] xref: TAO:0001527 xref: ZFIN:ZDB-ANAT-070928-129 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of UBERON:0005886 ! pharyngeal arch 3-7 skeleton [Term] id: ZFA:0001528 name: epibranchial 1 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and the medial end of pharyngobranchial 1." [ZFIN:curator] xref: TAO:0001528 xref: ZFIN:ZDB-ANAT-070928-130 is_a: ZFA:0001527 ! epibranchial cartilage (zebrafish) relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton (zebrafish) [Term] id: ZFA:0001529 name: epibranchial 3 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and the medial end of pharyngobranchial 3." [ZFIN:curator] xref: TAO:0001529 xref: ZFIN:ZDB-ANAT-070928-131 is_a: ZFA:0001527 ! epibranchial cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001530 name: epibranchial 2 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and the medial end of pharyngobranchial 2." [ZFIN:curator] xref: TAO:0001530 xref: ZFIN:ZDB-ANAT-070928-132 is_a: ZFA:0001527 ! epibranchial cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001531 name: epibranchial 4 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and the medial end of pharyngobranchial 4." [ZFIN:curator] xref: TAO:0001531 xref: ZFIN:ZDB-ANAT-070928-133 is_a: ZFA:0001527 ! epibranchial cartilage (zebrafish) relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton (zebrafish) [Term] id: ZFA:0001532 name: axial bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-134 [Term] id: ZFA:0001533 name: pharyngobranchial cartilage (zebrafish) namespace: zebrafish_anatomy def: "Paired cartilages that project medially from the medial tips of epibranchials." [ZFIN:curator] synonym: "pharyngobranchial cartilages" EXACT PLURAL [] xref: TAO:0001533 xref: ZFIN:ZDB-ANAT-070928-135 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) [Term] id: ZFA:0001534 name: pharyngobranchial 3 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3." [ZFIN:curator] synonym: "pharyngobranchial 3 cartilages" EXACT PLURAL [] xref: TAO:0001534 xref: ZFIN:ZDB-ANAT-070928-136 is_a: ZFA:0001533 ! pharyngobranchial cartilage (zebrafish) relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton (zebrafish) [Term] id: ZFA:0001535 name: median fin cartilage (zebrafish) namespace: zebrafish_anatomy synonym: "median fin cartilages" EXACT PLURAL [] xref: TAO:0001535 xref: ZFIN:ZDB-ANAT-070928-137 is_a: ZFA:0001457 ! postcranial axial cartilage (zebrafish) [Term] id: ZFA:0001536 name: pharyngobranchial 2 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2." [ZFIN:curator] synonym: "pharyngobranchial 2 cartilages" EXACT PLURAL [] xref: TAO:0001536 xref: ZFIN:ZDB-ANAT-070928-138 is_a: ZFA:0001533 ! pharyngobranchial cartilage (zebrafish) relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton (zebrafish) [Term] id: ZFA:0001537 name: mesocoracoid cartilage (zebrafish) namespace: zebrafish_anatomy def: "Cartilage that develops initially on the medial side of the coraco-scapular cartilage." [ZFIN:curator] synonym: "mesocorocoid cartilages" EXACT PLURAL [] xref: TAO:0001537 xref: ZFIN:ZDB-ANAT-070928-139 is_a: UBERON:0007390 ! fore limb/fin cartilage [Term] id: ZFA:0001538 name: pelvic radial cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior edge of the basipterygium." [ZFIN:curator] synonym: "pelvic radial cartilages" EXACT PLURAL [] xref: TAO:0001538 xref: ZFIN:ZDB-ANAT-070928-140 is_a: UBERON:0007391 ! hind limb/fin cartilage [Term] id: ZFA:0001539 name: basipterygium cartilage (zebrafish) namespace: zebrafish_anatomy def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [ZFIN:curator] synonym: "basipterygium cartilages" EXACT PLURAL [] xref: TAO:0001539 xref: ZFIN:ZDB-ANAT-070928-141 is_a: UBERON:0007391 ! hind limb/fin cartilage [Term] id: ZFA:0001540 name: pelvic radial 3 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior and medial edge of the basipterygium." [ZFIN:curator] synonym: "pelvic radials 3 cartilages" EXACT PLURAL [] xref: TAO:0001540 xref: ZFIN:ZDB-ANAT-070928-142 is_a: ZFA:0001538 ! pelvic radial cartilage (zebrafish) [Term] id: ZFA:0001541 name: pelvic radial 2 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2." [ZFIN:curator] synonym: "pelvic radials 2 cartilages" EXACT PLURAL [] xref: TAO:0001541 xref: ZFIN:ZDB-ANAT-070928-143 is_a: ZFA:0001538 ! pelvic radial cartilage (zebrafish) [Term] id: ZFA:0001542 name: pelvic radial 1 cartilage (zebrafish) namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior and lateral edge of the basipterygium." [ZFIN:curator] synonym: "pelvic radials 1 cartilages" EXACT PLURAL [] xref: TAO:0001542 xref: ZFIN:ZDB-ANAT-070928-144 is_a: ZFA:0001538 ! pelvic radial cartilage (zebrafish) [Term] id: ZFA:0001544 name: chondrocranium bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-146 [Term] id: ZFA:0001545 name: cranial bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-147 [Term] id: ZFA:0001546 name: pharyngeal arch bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-148 [Term] id: ZFA:0001547 name: dermatocranium bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-149 [Term] id: ZFA:0001548 name: axial fin bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-150 [Term] id: ZFA:0001549 name: paired fin bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-151 [Term] id: ZFA:0001550 name: caudal fin lepidotrichium (zebrafish) namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the caudal fin." [ZFIN:curator] synonym: "caudal fin lepidotrichia" EXACT PLURAL [] synonym: "caudal fin ray" EXACT [] xref: TAO:0001550 xref: ZFIN:ZDB-ANAT-070928-152 is_a: ZFA:0001554 ! lepidotrichium (zebrafish) relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0001551 name: pectoral fin lepidotrichium (zebrafish) namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally." [ZFIN:curator] synonym: "pectoral fin lepidotrichia" EXACT PLURAL [] synonym: "pectoral fin ray" EXACT [] xref: TAO:0001551 xref: ZFIN:ZDB-ANAT-070928-153 is_a: ZFA:0001554 ! lepidotrichium (zebrafish) relationship: part_of UBERON:0007272 ! fore limb/fin skeleton [Term] id: ZFA:0001552 name: pelvic fin lepidotrichium (zebrafish) namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the pelvic fin." [ZFIN:curator] synonym: "pelvic fin lepidotrichia" EXACT PLURAL [] synonym: "pelvic fin ray" EXACT [] xref: TAO:0001552 xref: ZFIN:ZDB-ANAT-070928-154 is_a: ZFA:0001554 ! lepidotrichium (zebrafish) relationship: part_of UBERON:0007273 ! hind limb/fin skeleton [Term] id: ZFA:0001553 name: fin bone namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-070928-155 [Term] id: ZFA:0001554 name: lepidotrichium (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [ZFIN:ZDB-PUB-031103-13] synonym: "lepidotrichia" EXACT PLURAL [] xref: TAO:0001554 xref: ZFIN:ZDB-ANAT-070928-156 is_a: UBERON:0008907 ! dermal bone [Term] id: ZFA:0001560 name: hypural 1 (zebrafish) namespace: zebrafish_anatomy def: "Ventral most hypural of the caudal fin. Supports the lower lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001560 xref: ZFIN:ZDB-ANAT-070928-162 is_a: ZFA:0000364 ! hypural (zebrafish) [Term] id: ZFA:0001561 name: hypural 2 (zebrafish) namespace: zebrafish_anatomy def: "Hypural of the caudal fin dorsal to hypural 1. Supports the lower lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001561 xref: ZFIN:ZDB-ANAT-070928-163 is_a: ZFA:0000364 ! hypural (zebrafish) [Term] id: ZFA:0001562 name: hypural 3 (zebrafish) namespace: zebrafish_anatomy def: "Hypural dorsal to hypural 2 that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001562 xref: ZFIN:ZDB-ANAT-070928-164 is_a: ZFA:0000364 ! hypural (zebrafish) [Term] id: ZFA:0001563 name: hypural 4 (zebrafish) namespace: zebrafish_anatomy def: "Hypural dorsal to hypural 3 that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103] xref: TAO:0001563 xref: ZFIN:ZDB-ANAT-070928-165 is_a: ZFA:0000364 ! hypural (zebrafish) [Term] id: ZFA:0001564 name: hypural 5 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal-most hypural, that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001564 xref: ZFIN:ZDB-ANAT-070928-166 is_a: ZFA:0000364 ! hypural (zebrafish) [Term] id: ZFA:0001565 name: oocyte stage II (zebrafish) namespace: zebrafish_anatomy def: "Oocyte part of stage II ovarian follicle." [ZFIN:curator] comment: In stage II (cortical alveolus stage), oocytes are distinguished by the appearance of variably sized cortical alveoli and the vitelline envelope becomes prominent. ZDB-PUB-961014-1020 subset: cell_slim ! cell_slim synonym: "oocytes stage II" EXACT PLURAL [] xref: TAO:0001565 xref: ZFIN:ZDB-ANAT-070928-167 is_a: CL:0000023 ! oocyte relationship: part_of ZFA:0001265 ! ovarian follicle stage II (zebrafish) [Term] id: ZFA:0001566 name: oocyte stage III (zebrafish) namespace: zebrafish_anatomy def: "Oocyte part of stage III ovarian follicle." [ZFIN:curator] comment: In stage III (vitellogenesis), yolk proteins appear in oocytes and yolk bodies with crystalline yolk accrue during this major growth stage. Oocytes develop the capacity to respond in vitro to the steroid 17, 20-dihydroxy-4-pregnen-3-one (DHP) by undergoing oocyte maturation. ZDB-PUB-961014-1020 subset: cell_slim ! cell_slim synonym: "oocytes stage III" EXACT PLURAL [] xref: TAO:0001566 xref: ZFIN:ZDB-ANAT-070928-168 is_a: CL:0000023 ! oocyte relationship: part_of ZFA:0001266 ! ovarian follicle stage III (zebrafish) [Term] id: ZFA:0001567 name: oocyte stage I (zebrafish) namespace: zebrafish_anatomy def: "Oocyte part of stage I ovarian follicle." [ZFIN:curator] comment: Oocytes reside in nests with other oocytes (Stage IA) and then within a definitive follicle (Stage IB), where they greatly increase in size ZDB-PUB-961014-1020. subset: cell_slim ! cell_slim synonym: "oocytes stage I" EXACT PLURAL [] xref: TAO:0001567 xref: ZFIN:ZDB-ANAT-070928-169 is_a: CL:0000023 ! oocyte relationship: part_of ZFA:0001263 ! ovarian follicle stage I (zebrafish) [Term] id: ZFA:0001568 name: oocyte stage IV (zebrafish) namespace: zebrafish_anatomy def: "Oocyte part of stage IV ovarian follicle." [ZFIN:curator] comment: In stage IV (oocyte maturation), oocytes increase slightly in size, become translucent, and their yolk becomes non-crystalline as they undergo final meiotic maturation in vivo (and in response to DHP in vitro). ZDB-PUB-961014-1020 subset: cell_slim ! cell_slim synonym: "oocytes stage IV" EXACT PLURAL [] xref: TAO:0001568 xref: ZFIN:ZDB-ANAT-070928-170 is_a: CL:0000023 ! oocyte relationship: part_of UBERON:0003982 ! mature ovarian follicle [Term] id: ZFA:0001569 name: oocyte stage V (zebrafish) namespace: zebrafish_anatomy def: "Oocyte part of stage V ovarian follicle." [ZFIN:curator] comment: In stage V (mature egg), eggs (approx. 0.75 mm) are ovulated into the ovarian lumen and are capable of fertilization ZDB-PUB-961014-1020 subset: cell_slim ! cell_slim synonym: "mature egg" EXACT [] synonym: "unactivated egg" EXACT [] xref: TAO:0001569 xref: ZFIN:ZDB-ANAT-070928-171 is_a: CL:0000023 ! oocyte [Term] id: ZFA:0001570 name: unfertilized egg (zebrafish) namespace: zebrafish_anatomy comment: Outside the body. subset: cell_slim ! cell_slim synonym: "activated oocyte" EXACT [] xref: TAO:0001570 xref: ZFIN:ZDB-ANAT-070928-172 is_a: CL:0000000 ! cell relationship: develops_from ZFA:0001569 ! oocyte stage V (zebrafish) [Term] id: ZFA:0001571 name: postovulatory follicle (zebrafish) namespace: zebrafish_anatomy synonym: "postovulatory follicles" EXACT PLURAL [] xref: TAO:0001571 xref: ZFIN:ZDB-ANAT-070928-173 is_a: UBERON:0001305 ! ovarian follicle [Term] id: ZFA:0001577 name: premaxilla ascending process (zebrafish) namespace: zebrafish_anatomy def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [ZFIN:curator] synonym: "premaxilla ascending processes" EXACT PLURAL [] xref: TAO:0001577 xref: ZFIN:ZDB-ANAT-070928-179 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0002244 ! premaxilla [Term] id: ZFA:0001578 name: anterior dorsomedial process of autopalatine (zebrafish) namespace: zebrafish_anatomy def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [ZFIN:curator] synonym: "anterior dorsomedial process of autopalatines" EXACT PLURAL [] xref: TAO:0001578 xref: ZFIN:ZDB-ANAT-070928-180 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0004748 ! autopalatine [Term] id: ZFA:0001579 name: ural vertebra 2 (zebrafish) namespace: zebrafish_anatomy def: "Ural vertebra that is the second vertebra posterior to preural centrum 1." [ZFIN:curator] xref: TAO:0001579 xref: ZFIN:ZDB-ANAT-071024-1 is_a: UBERON:0002412 ! vertebra relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0001581 name: ural centrum 2 (zebrafish) namespace: zebrafish_anatomy def: "A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone." [TAO:curator] xref: TAO:0001581 xref: ZFIN:ZDB-ANAT-071024-3 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0001579 ! ural vertebra 2 (zebrafish) [Term] id: ZFA:0001582 name: non-Weberian precaudal vertebra (zebrafish) namespace: zebrafish_anatomy def: "Precaudal vertebra that is not a Weberian vertebra. Vertebra 5 through 14." [ZFIN:curator] synonym: "non-Weberian precaudal vertebrae" EXACT PLURAL [] xref: TAO:0001582 xref: ZFIN:ZDB-ANAT-071024-4 is_a: ZFA:0000263 ! precaudal vertebra (zebrafish) [Term] id: ZFA:0001583 name: preural centrum 1+ ural centrum 1 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra which is the fused centra of preural 1 and ural 1. These elements do not develop independently in zebrafish." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001583 xref: ZFIN:ZDB-ANAT-071024-5 is_a: UBERON:0002412 ! vertebra relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0001584 name: caudal fin procurrent ray (zebrafish) namespace: zebrafish_anatomy def: "Caudal fin lepidotrichium that is located anterior to the principal caudal fin rays. Caudal procurrent rays are unbranched." [ZFIN:curator] synonym: "caudal procurrent lepidotrichium" EXACT [] synonym: "caudal procurrent ray " RELATED [] xref: TAO:0001584 xref: ZFIN:ZDB-ANAT-071024-6 is_a: ZFA:0001550 ! caudal fin lepidotrichium (zebrafish) [Term] id: ZFA:0001585 name: caudal fin principal ray (zebrafish) namespace: zebrafish_anatomy def: "Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented-and-branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone." [ZFIN:curator] synonym: "caudal principal lepidotrichium" EXACT [] synonym: "caudal principal ray" EXACT [] xref: TAO:0001585 xref: ZFIN:ZDB-ANAT-071024-7 is_a: ZFA:0001550 ! caudal fin lepidotrichium (zebrafish) [Term] id: ZFA:0001586 name: pectoral fin radial (zebrafish) namespace: zebrafish_anatomy def: "Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:curator] synonym: "pectoral fin radials" EXACT PLURAL [] xref: TAO:0001586 xref: ZFIN:ZDB-ANAT-071024-8 is_a: ZFA:0000271 ! radial (zebrafish) relationship: develops_from ZFA:0001456 ! pectoral fin endoskeletal disc (zebrafish) relationship: part_of UBERON:0007272 ! fore limb/fin skeleton [Term] id: ZFA:0001587 name: pectoral fin proximal radial (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid)." [TAO:curator] xref: TAO:0001587 xref: ZFIN:ZDB-ANAT-071024-9 is_a: ZFA:0001586 ! pectoral fin radial (zebrafish) [Term] id: ZFA:0001588 name: pectoral fin distal radial (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired." [TAO:curator] synonym: "pectoral fin distal radials" EXACT PLURAL [] xref: TAO:0001588 xref: ZFIN:ZDB-ANAT-071024-10 is_a: ZFA:0001586 ! pectoral fin radial (zebrafish) [Term] id: ZFA:0001589 name: propterygium (zebrafish) namespace: zebrafish_anatomy def: "The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula." [TAO:Curator] synonym: "propterygia" EXACT PLURAL [] xref: TAO:0001589 xref: ZFIN:ZDB-ANAT-071024-11 is_a: ZFA:0001588 ! pectoral fin distal radial (zebrafish) [Term] id: ZFA:0001592 name: claustrum bone (zebrafish) namespace: zebrafish_anatomy def: "Bone that is bilaterally paired endochondral bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts." [ZFIN:curator] xref: TAO:0001592 xref: ZFIN:ZDB-ANAT-071024-14 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007842 ! membrane bone is_a: ZFA:0000461 ! Weberian ossicle (zebrafish) relationship: develops_from ZFA:0000637 ! claustrum cartilage (zebrafish) [Term] id: ZFA:0001593 name: quadrate ventral process (zebrafish) namespace: zebrafish_anatomy def: "An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate." [ZFIN:curator] synonym: "quadrate ventral processes" EXACT PLURAL [] xref: TAO:0000224 xref: ZFIN:ZDB-ANAT-080417-72 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0006597 ! quadrate [Term] id: ZFA:0001594 name: preopercle horizontal limb (zebrafish) namespace: zebrafish_anatomy def: "A dermal bone that is the lower, horizontal portion of the preopercle bone." [ZFIN:curator] synonym: "preopercle horizontal arm" EXACT [] synonym: "preopercle lower limb" EXACT [] xref: TAO:0000289 xref: ZFIN:ZDB-ANAT-080417-73 is_a: UBERON:0008907 ! dermal bone relationship: part_of ZFA:0000264 ! preopercle (zebrafish) [Term] id: ZFA:0001595 name: preopercle vertical limb (zebrafish) namespace: zebrafish_anatomy def: "A dermal bone that is the upper, vertical portion of the preopercle bone." [ZFIN:curator] synonym: "preopercle upper limb" EXACT [] synonym: "preopercle vertical arm" EXACT [] xref: TAO:0000336 xref: ZFIN:ZDB-ANAT-080417-74 is_a: UBERON:0008907 ! dermal bone relationship: part_of ZFA:0000264 ! preopercle (zebrafish) [Term] id: ZFA:0001597 name: exoccipital posteroventral region (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone which is the posteroventral region of the exoccipital bone." [ZFIN:curator] synonym: "exoccipitals posteroventral regions" EXACT PLURAL [] xref: TAO:0000348 xref: ZFIN:ZDB-ANAT-080417-76 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of ZFA:0001627 ! lagenar capsule (zebrafish) [Term] id: ZFA:0001598 name: basioccipital posterodorsal region (zebrafish) namespace: zebrafish_anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [ZFIN:curator] xref: TAO:0000337 xref: ZFIN:ZDB-ANAT-080417-77 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of ZFA:0001627 ! lagenar capsule (zebrafish) [Term] id: ZFA:0001599 name: os suspensorium medial flange (zebrafish) namespace: zebrafish_anatomy xref: TAO:0002214 xref: ZFIN:ZDB-ANAT-080417-78 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0001171 ! os suspensorium (zebrafish) [Term] id: ZFA:0001600 name: neural spine 4 (zebrafish) namespace: zebrafish_anatomy def: "Neural spine that is located on the fourth vertebra." [ZFIN:curator] xref: TAO:0001546 xref: ZFIN:ZDB-ANAT-080417-79 is_a: UBERON:0001076 ! spinous process of vertebra [Term] id: ZFA:0001601 name: manubrium (zebrafish) namespace: zebrafish_anatomy synonym: "anterior process" EXACT [] synonym: "horizontal process" EXACT [] synonym: "manubrium incudus" EXACT [] xref: TAO:0001553 xref: ZFIN:ZDB-ANAT-080417-80 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0000525 ! intercalarium (zebrafish) [Term] id: ZFA:0001602 name: intercalarium ascending process (zebrafish) namespace: zebrafish_anatomy xref: TAO:0001548 xref: ZFIN:ZDB-ANAT-080417-81 is_a: UBERON:0002513 ! endochondral bone relationship: part_of ZFA:0000525 ! intercalarium (zebrafish) [Term] id: ZFA:0001604 name: caudal fin upper lobe (zebrafish) namespace: zebrafish_anatomy def: "Surface structure that is the dorsal portion of the caudal fin." [ZFIN:curator] synonym: "caudal fin dorsal lobe" EXACT [] xref: TAO:0001593 xref: ZFIN:ZDB-ANAT-080417-83 is_a: UBERON:0003102 ! surface structure relationship: part_of ZFA:0001058 ! caudal fin (zebrafish) [Term] id: ZFA:0001605 name: caudal fin lower lobe (zebrafish) namespace: zebrafish_anatomy def: "Surface structure that is the ventral portion of the caudal fin." [ZFIN:curator] synonym: "caudal fin ventral lobe" EXACT [] xref: TAO:0001594 xref: ZFIN:ZDB-ANAT-080417-84 is_a: UBERON:0003102 ! surface structure relationship: part_of ZFA:0001058 ! caudal fin (zebrafish) [Term] id: ZFA:0001610 name: pharyngeal arch 7 (zebrafish) namespace: zebrafish_anatomy synonym: "branchial arch 5" EXACT [] synonym: "gill arch 5" EXACT [] synonym: "visceral arch 7" EXACT [] xref: TAO:0001602 xref: ZFIN:ZDB-ANAT-080417-89 is_a: UBERON:0008896 ! pharyngeal arch 3-7 [Term] id: ZFA:0001618 name: pons namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-080417-97 [Term] id: ZFA:0001623 name: posterior pronephric duct (zebrafish) namespace: zebrafish_anatomy def: "Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening." [ZFIN:ZDB-PUB-071029-9] synonym: "posterior pronephric ducts" EXACT PLURAL [] xref: TAO:0002225 xref: ZFIN:ZDB-ANAT-080417-102 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0003060 ! pronephric duct [Term] id: ZFA:0001624 name: pronephric distal late tubule (zebrafish) namespace: zebrafish_anatomy def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule." [ZFIN:ZDB-PUB-071029-9] synonym: "distal late tubules" EXACT PLURAL [] xref: ZFIN:ZDB-ANAT-080417-103 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0003060 ! pronephric duct [Term] id: ZFA:0001625 name: optic nerve head (zebrafish) namespace: zebrafish_anatomy def: "Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye." [ZFIN:curator] synonym: "optic nerve heads" EXACT PLURAL [] xref: TAO:0002213 xref: ZFIN:ZDB-ANAT-080417-104 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000941 ! cranial nerve II [Term] id: ZFA:0001627 name: lagenar capsule (zebrafish) namespace: zebrafish_anatomy def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [ZFIN:curator] synonym: "lagenar capsules" EXACT PLURAL [] xref: TAO:0001620 xref: ZFIN:ZDB-ANAT-080417-106 is_a: UBERON:0000477 ! anatomical cluster [Term] id: ZFA:0001631 name: notochordal ossification (zebrafish) namespace: zebrafish_anatomy def: "Perichordal bone that surrounds the anterior tip of the notochord." [ZFIN:curator] xref: TAO:0001640 xref: ZFIN:ZDB-ANAT-080417-110 is_a: UBERON:0008909 ! perichordal bone tissue relationship: develops_from UBERON:0007862 ! perichordal tissue [Term] id: ZFA:0001641 name: rudimentary neural arch (zebrafish) namespace: zebrafish_anatomy def: "Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002." [ZFIN:curator] xref: TAO:0001666 xref: ZFIN:ZDB-ANAT-080417-120 is_a: UBERON:0003861 ! vertebral arch relationship: part_of UBERON:0003106 ! urostyle [Term] id: ZFA:0001645 name: angular bone (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:curator] synonym: "angular bones" EXACT PLURAL [] xref: TAO:0001669 xref: ZFIN:ZDB-ANAT-080417-124 is_a: UBERON:0008907 ! dermal bone [Term] id: ZFA:0001646 name: anal fin radial (zebrafish) namespace: zebrafish_anatomy def: "Internal skeletal supports of the anal fin." [TAO:curator] synonym: "anal fin radials" EXACT PLURAL [] xref: TAO:0001671 xref: ZFIN:ZDB-ANAT-080417-125 is_a: ZFA:0000271 ! radial (zebrafish) [Term] id: ZFA:0001647 name: dorsal fin radial (zebrafish) namespace: zebrafish_anatomy def: "Internal skeletal supports of the dorsal fin." [TAO:curator] synonym: "dorsal fin radials" EXACT PLURAL [] xref: TAO:0001672 xref: ZFIN:ZDB-ANAT-080417-126 is_a: ZFA:0000271 ! radial (zebrafish) [Term] id: ZFA:0001649 name: infraorbital series (zebrafish) namespace: zebrafish_anatomy def: "Anatomical cluster that is the series of dermal bones associated with the infraorbital sensory canal located under and posterior to the eye." [ZFIN:curator] synonym: "circumorbital series" EXACT [] xref: TAO:0001709 xref: ZFIN:ZDB-ANAT-081013-24 is_a: UBERON:0000477 ! anatomical cluster [Term] id: ZFA:0001650 name: branchial mesenchyme (zebrafish) namespace: zebrafish_anatomy synonym: "gill mesenchyme" EXACT [] xref: TAO:0002172 xref: ZFIN:ZDB-ANAT-081013-25 is_a: UBERON:0005253 ! head mesenchyme [Term] id: ZFA:0001651 name: hypobranchial muscle (zebrafish) namespace: zebrafish_anatomy def: "Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape." [ZFIN:ZDB-PUB-080306-33] synonym: "sternohyoideus" EXACT [] xref: TAO:0002200 xref: ZFIN:ZDB-ANAT-081013-26 is_a: UBERON:0002376 ! muscle of head [Term] id: ZFA:0001653 name: pericardial muscle (zebrafish) namespace: zebrafish_anatomy def: "Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium." [ZFIN:ZDB-PUB-001026-2] xref: TAO:0002221 xref: ZFIN:ZDB-ANAT-081013-28 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: ZFA:0001654 name: opercular cavity (zebrafish) namespace: zebrafish_anatomy def: "Anatomical space which is located beneath the operculum and external to the gills." [ZFIN:curator] xref: TAO:0002154 xref: ZFIN:ZDB-ANAT-081013-29 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000033 ! head [Term] id: ZFA:0001656 name: pleuroperitoneal cavity (zebrafish) namespace: zebrafish_anatomy def: "Anatomical space which contains the abdominal visceral and swim bladder. Located posterior to the pericardial cavity, separated by the transverse septum. From Functional Anatomy of the Vertebrates, third edition." [ISBN:0030223695, ZFIN:curator] xref: TAO:0002224 xref: ZFIN:ZDB-ANAT-081013-31 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002323 ! body cavity [Term] id: ZFA:0001657 name: supraoptic tract (zebrafish) namespace: zebrafish_anatomy def: "CNS tract/commissure which extends between the telencephalon and diencephalon." [ZFIN:ZDB-PUB-961014-955] synonym: "SOT" EXACT [] xref: TAO:0002244 xref: ZFIN:ZDB-ANAT-081013-32 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0000955 ! brain [Term] id: ZFA:0001662 name: preglomerular nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0002226 xref: ZFIN:ZDB-ANAT-081013-37 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0001666 name: periventricular nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which is in contact with the median ependymal lining of the ventricle and consists of the dorsal, ventral, supracommissural and postcommissural nuclei of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0002222 xref: ZFIN:ZDB-ANAT-081013-41 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000204 ! ventral telencephalon [Term] id: ZFA:0001667 name: peripheral nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] xref: TAO:0002179 xref: ZFIN:ZDB-ANAT-081013-42 is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000204 ! ventral telencephalon [Term] id: ZFA:0001668 name: central nucleus of ventral telencephalon (zebrafish) namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus centralis" EXACT [] xref: TAO:0002180 xref: ZFIN:ZDB-ANAT-081013-43 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon (zebrafish) [Term] id: ZFA:0001669 name: intermediate nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2] xref: TAO:0002202 xref: ZFIN:ZDB-ANAT-081013-44 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000633 ! caudal tuberculum (zebrafish) [Term] id: ZFA:0001670 name: notochord posterior region (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is the part of the notochord located in the caudal fin." [ZFIN:curator] xref: TAO:0001821 xref: ZFIN:ZDB-ANAT-090212-9 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002328 ! notochord relationship: part_of ZFA:0000862 ! caudal fin skeleton (zebrafish) [Term] id: ZFA:0001671 name: macula communis (zebrafish) namespace: zebrafish_anatomy def: "Epithelium that is the primary epithelium of the developing inner ear and has anterior and posterior maculae as its parts. These maculae later move apart into distinct regions of epithelium." [ZFIN:ZDB-PUB-961014-383] xref: TAO:0002206 xref: ZFIN:ZDB-ANAT-090212-10 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0001846 ! internal ear [Term] id: ZFA:0001672 name: dorsolateral septum (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [ZFIN:ZDB-PUB-961014-383] synonym: "dorsal bar" RELATED [] xref: TAO:0002193 xref: ZFIN:ZDB-ANAT-090212-11 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001841 ! anterior semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: ZFA:0001673 name: pronephric podocyte (zebrafish) namespace: zebrafish_anatomy def: "Podocyte that is part of the pronephros." [ZFIN:curator] subset: cell_slim ! cell_slim xref: TAO:0002237 xref: ZFIN:ZDB-ANAT-090212-12 is_a: CL:0000653 ! glomerular visceral epithelial cell relationship: part_of UBERON:0004739 ! pronephric glomerulus [Term] id: ZFA:0001674 name: mesonephric podocyte (zebrafish) namespace: zebrafish_anatomy def: "Podocyte that is part of the kidney (mesonephros)." [ZFIN:curator] subset: cell_slim ! cell_slim xref: TAO:0002208 xref: ZFIN:ZDB-ANAT-090212-13 is_a: CL:0000653 ! glomerular visceral epithelial cell relationship: part_of UBERON:0000074 ! renal glomerulus [Term] id: ZFA:0001676 name: annular ligament (zebrafish) namespace: zebrafish_anatomy def: "Ligament that is in the eye and is located at the angle between the cornea and the iris." [ZFIN:ZDB-PUB-070629-16] xref: TAO:0002141 xref: ZFIN:ZDB-ANAT-090212-15 is_a: UBERON:0008846 ! skeletal ligament relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: ZFA:0001678 name: immature eye (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that consists of the structures that develop into the retina and lens." [ZFIN:curator] comment: Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-090226-1 correct Dbxref ZDB-ANAT-090227-5. xref: TAO:0002201 xref: ZFIN:ZDB-ANAT-090227-5 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: ZFA:0001680 name: parvocellular preoptic nucleus (zebrafish) namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] xref: TAO:0002219 xref: ZFIN:ZDB-ANAT-090922-147 is_a: UBERON:0006569 ! diencephalic nucleus [Term] id: ZFA:0001692 name: hindbrain commissure (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter that crosses the midline within the hindbrain." [ZFIN:ZDB-PUB-090417-11] xref: TAO:0002199 xref: ZFIN:ZDB-ANAT-090922-159 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002028 ! hindbrain [Term] id: ZFA:0001695 name: dorsolateral motor nucleus of vagal nerve (zebrafish) namespace: zebrafish_anatomy def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhombomere 8." [ZFIN:ZDB-PUB-090417-11] synonym: "dlX" EXACT [] xref: TAO:0002192 xref: ZFIN:ZDB-ANAT-090922-162 is_a: ZFA:0000297 ! motor nucleus of vagal nerve (zebrafish) [Term] id: ZFA:0001696 name: medial motor nucleus of vagal nerve (zebrafish) namespace: zebrafish_anatomy def: "Motor nucleus of vagal nerve that is located within the medial portion of rhombomere 8." [ZFIN:ZDB-PUB-090417-11] synonym: "mmX" EXACT [] xref: TAO:0002207 xref: ZFIN:ZDB-ANAT-090922-163 is_a: ZFA:0000297 ! motor nucleus of vagal nerve (zebrafish) [Term] id: ZFA:0001697 name: octaval nerve motor nucleus (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [ZFIN:ZDB-PUB-061229-17] synonym: "OLe" EXACT [] synonym: "cranial nerve VIII motor nucleus" EXACT [] synonym: "octaval nerve motor nuclei" EXACT PLURAL [] xref: TAO:0002174 xref: ZFIN:ZDB-ANAT-090922-164 is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: ZFA:0001698 name: rostral octaval nerve motor nucleus (zebrafish) namespace: zebrafish_anatomy def: "Octaval nerve motor nucleus that is initially located within rhombomere 6." [ZFIN:ZDB-PUB-061229-17] synonym: "REN" EXACT [ZFIN:ZDB-PUB-061229-17] synonym: "ROLE" EXACT [] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [] synonym: "rostral efferent nuclei" RELATED PLURAL [ZFIN:ZDB-PUB-061229-17] xref: TAO:0002175 xref: ZFIN:ZDB-ANAT-090922-165 is_a: ZFA:0001697 ! octaval nerve motor nucleus (zebrafish) [Term] id: ZFA:0001699 name: caudal octaval nerve motor nucleus (zebrafish) namespace: zebrafish_anatomy def: "Octaval nerve motor nucleus that is initially located within rhombomere 7." [ZFIN:ZDB-PUB-061229-17] synonym: "CEN" EXACT [ZFIN:ZDB-PUB-061229-17] synonym: "RELL" EXACT [] synonym: "caudal efferent nuclei" RELATED PLURAL [ZFIN:ZDB-PUB-061229-17] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [] xref: TAO:0002176 xref: ZFIN:ZDB-ANAT-090922-166 is_a: ZFA:0001697 ! octaval nerve motor nucleus (zebrafish) [Term] id: ZFA:0001703 name: epidermal placode (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] xref: TAO:0002195 xref: ZFIN:ZDB-ANAT-090922-170 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002025 ! stratum basale of epidermis [Term] id: ZFA:0001704 name: scale primordium (zebrafish) namespace: zebrafish_anatomy def: "A portion of tissue that is an accumulation of fibroblasts beneath the epidermal placode and giving rise to the scale." [ZFIN:ZDB-PUB-081008-12] xref: TAO:0002242 xref: ZFIN:ZDB-ANAT-090922-171 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002067 ! dermis [Term] id: ZFA:0001706 name: Purkinje cell layer corpus cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is part of the corpus cerebelli and contains Purkinje cells." [ZFIN:ZDB-PUB-090422-9] xref: TAO:0002240 xref: ZFIN:ZDB-ANAT-090922-173 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000188 ! corpus cerebelli (zebrafish) [Term] id: ZFA:0001709 name: Purkinje cell layer valvula cerebelli (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that is part of the valvula cerebelli and contains Purkinje cells." [ZFIN:ZDB-PUB-090422-9] xref: TAO:0002241 xref: ZFIN:ZDB-ANAT-090922-176 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000603 ! valvula cerebelli (zebrafish) [Term] id: ZFA:0001710 name: mossy fiber (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] synonym: "mossy fibers" EXACT PLURAL [] xref: TAO:0002210 xref: ZFIN:ZDB-ANAT-090922-177 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000188 ! corpus cerebelli (zebrafish) relationship: part_of ZFA:0000603 ! valvula cerebelli (zebrafish) [Term] id: ZFA:0001711 name: climbing fiber (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] synonym: "climbing fibers" EXACT PLURAL [] xref: TAO:0002185 xref: ZFIN:ZDB-ANAT-090922-178 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000188 ! corpus cerebelli (zebrafish) relationship: part_of ZFA:0000603 ! valvula cerebelli (zebrafish) [Term] id: ZFA:0001713 name: parallel fiber (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] synonym: "parallel fibers" EXACT PLURAL [] xref: TAO:0002218 xref: ZFIN:ZDB-ANAT-090922-180 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0000394 ! molecular layer corpus cerebelli (zebrafish) relationship: part_of ZFA:0000913 ! molecular layer valvula cerebelli (zebrafish) [Term] id: ZFA:0001714 name: presumptive ventral mesoderm (zebrafish) namespace: zebrafish_anatomy xref: TAO:0002235 xref: ZFIN:ZDB-ANAT-090922-181 is_a: UBERON:0006603 ! presumptive mesoderm [Term] id: ZFA:0001715 name: otic vesicle protrusion (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue within the otic vesicle that consists of a thin layer of otic epithelium covering a finger-shaped core of acellular matrix." [ZFIN:ZDB-PUB-090330-11] xref: TAO:0002215 xref: ZFIN:ZDB-ANAT-090922-182 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003051 ! ear vesicle [Term] id: ZFA:0001716 name: otic vesicle ventral protrusion (zebrafish) namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is initially ventrally located and then fuses with the lateral protrusion, giving rise to the pillar of the lateral semicircular canal." [ZFIN:ZDB-PUB-090330-11] xref: TAO:0002216 xref: ZFIN:ZDB-ANAT-090922-183 is_a: ZFA:0001715 ! otic vesicle protrusion (zebrafish) [Term] id: ZFA:0001717 name: pillar of the semicircular canal (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue around which the semicircular canals flow." [ZFIN:ZDB-PUB-961014-383] xref: TAO:0002223 xref: ZFIN:ZDB-ANAT-090922-184 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: ZFA:0001718 name: presumptive atrium heart tube (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002228 xref: ZFIN:ZDB-ANAT-090922-185 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from ZFA:0001721 ! presumptive atrium primitive heart tube (zebrafish) relationship: part_of UBERON:0004141 ! heart tube [Term] id: ZFA:0001719 name: presumptive cardiac ventricle heart tube (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002231 xref: ZFA:0002231 xref: ZFIN:ZDB-ANAT-090922-186 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from ZFA:0001720 ! presumptive cardiac ventricle primitive heart tube (zebrafish) relationship: part_of UBERON:0004141 ! heart tube [Term] id: ZFA:0001720 name: presumptive cardiac ventricle primitive heart tube (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the primitive heart tube and will become the cardiac ventricle." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002232 xref: ZFIN:ZDB-ANAT-090922-187 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0005498 ! primitive heart tube [Term] id: ZFA:0001721 name: presumptive atrium primitive heart tube (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the primitive heart tube and will become the cardiac atrium." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002229 xref: ZFIN:ZDB-ANAT-090922-188 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0005498 ! primitive heart tube [Term] id: ZFA:0005000 name: basal communicating artery (zebrafish) namespace: zebrafish_anatomy synonym: "BCA" EXACT [] xref: TAO:0005000 xref: ZFIN:ZDB-ANAT-050915-120 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005010 name: mid cerebral vein (zebrafish) namespace: zebrafish_anatomy def: "The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceed laterally in a ventral direction to drain into the paired primordial midbrain channels (PHBC)." [ZFIN:ZDB-PUB-010205-5, http://zfin.org/zf_info/zfbook/stages/hatch.html] synonym: "MCeV" EXACT [] synonym: "mid-cerebral vein" EXACT [] synonym: "middle cerebral vein" EXACT [] xref: TAO:0005010 xref: ZFIN:ZDB-ANAT-050915-82 is_a: UBERON:0001638 ! vein relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005011 name: pseudobranchial artery (zebrafish) namespace: zebrafish_anatomy def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf." [ZFIN:ZDB-PUB-010205-5] synonym: "pseudobranchial arteries" EXACT PLURAL [] xref: TAO:0005011 xref: ZFIN:ZDB-ANAT-050915-130 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003118 ! aortic arch 1 [Term] id: ZFA:0005012 name: afferent filamental artery (zebrafish) namespace: zebrafish_anatomy def: "Artery that enters the gill filament." [ZFIN:curator] synonym: "AFA" EXACT [] synonym: "afferent filamental arteries" EXACT PLURAL [] xref: TAO:0005012 xref: ZFIN:ZDB-ANAT-050915-131 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0000666 ! filamental artery (zebrafish) relationship: part_of ZFA:0000716 ! afferent branchial artery (zebrafish) [Term] id: ZFA:0005013 name: concurrent branch afferent branchial artery (zebrafish) namespace: zebrafish_anatomy def: "The branch of the afferent branchial artery that continues posterodorsally." [ZFIN:ZDB-PUB-010205-5] synonym: "CCB" EXACT [] xref: TAO:0005013 xref: ZFIN:ZDB-ANAT-050915-132 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0000716 ! afferent branchial artery (zebrafish) [Term] id: ZFA:0005014 name: recurrent branch afferent branchial artery (zebrafish) namespace: zebrafish_anatomy def: "The anterioventral proceeding branch of the afferent branchial artery." [ZFIN:ZDB-PUB-010205-5] synonym: "RCB" EXACT [] synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL [] xref: TAO:0005014 xref: ZFIN:ZDB-ANAT-050915-133 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0000716 ! afferent branchial artery (zebrafish) [Term] id: ZFA:0005015 name: afferent lamellar arteriole (zebrafish) namespace: zebrafish_anatomy synonym: "AFL" EXACT [] synonym: "afferent lamellar arterioles" EXACT PLURAL [] xref: TAO:0005015 xref: ZFIN:ZDB-ANAT-050915-134 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0000211 ! gill lamella (zebrafish) relationship: part_of ZFA:0005012 ! afferent filamental artery (zebrafish) [Term] id: ZFA:0005017 name: primordial midbrain channel (zebrafish) namespace: zebrafish_anatomy def: "The vessel between the anterior cerebral vein and the mid cerebral vein." [ZFIN:ZDB-PUB-010205-5] synonym: "PMBC" EXACT [] xref: TAO:0005017 xref: ZFIN:ZDB-ANAT-050915-83 is_a: UBERON:0001638 ! vein relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005018 name: efferent filamental artery (zebrafish) namespace: zebrafish_anatomy def: "Artery that exits the gill filament." [ZFIN:curator] synonym: "EFA" EXACT [] xref: TAO:0005018 xref: ZFIN:ZDB-ANAT-050915-136 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0000202 ! efferent branchial artery (zebrafish) relationship: part_of ZFA:0000666 ! filamental artery (zebrafish) [Term] id: ZFA:0005019 name: efferent lamellar arteriole (zebrafish) namespace: zebrafish_anatomy synonym: "ELA" EXACT [] synonym: "efferent lamellar arterioles" EXACT PLURAL [] xref: TAO:0005019 xref: ZFIN:ZDB-ANAT-050915-137 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0000211 ! gill lamella (zebrafish) relationship: part_of ZFA:0005018 ! efferent filamental artery (zebrafish) [Term] id: ZFA:0005020 name: central artery (zebrafish) namespace: zebrafish_anatomy def: "Artery that irrigates the forebrain and midbrain." [ZFIN:ZDB-PUB-010205-5] synonym: "CtA" EXACT [] xref: TAO:0005020 xref: ZFIN:ZDB-ANAT-050915-138 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0005284 ! brain vasculature [Term] id: ZFA:0005021 name: cerebellar central artery (zebrafish) namespace: zebrafish_anatomy def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC." [ZFIN:ZDB-PUB-010205-5] synonym: "CCtA" EXACT [] xref: TAO:0005021 xref: ZFIN:ZDB-ANAT-050915-139 is_a: ZFA:0005020 ! central artery (zebrafish) [Term] id: ZFA:0005022 name: opercular artery (zebrafish) namespace: zebrafish_anatomy def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch." [ZFIN:ZDB-PUB-010205-5] synonym: "ORA" EXACT [] synonym: "external carotid artery" RELATED [] xref: TAO:0005022 xref: ZFIN:ZDB-ANAT-050915-140 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003118 ! aortic arch 1 [Term] id: ZFA:0005025 name: dorsal longitudinal anastomotic vessel (zebrafish) namespace: zebrafish_anatomy def: "Trunk vessel that runs medially along the dorsal-most portion of the trunk and post-vent region. The DLAVs are formed by the longitudinal anastomoses of the intersegmental vessels to form a right and left pair of dorsal longitudinal anastomotic vessels. These paired vessels remodel to form a single plexiform vessel beginning at 3dpf continuing until after 7dpf. The basilar artery connects to the DLAVs at the caudal end of the medulla oblongata. In the early embryo (2.5-3.5 dpf) the primitive hindbrain channels also connect to the DLAV." [ZFIN:ZDB-PUB-010205-5] comment: Eventually half of the ISVs will carry blood from the aorta to the DLAVs, and half from the DLAV to the posterior cardinal vein. synonym: "DLAV" EXACT [] xref: TAO:0005025 xref: ZFIN:ZDB-ANAT-050915-85 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0010204 ! tail vasculature relationship: part_of ZFA:0001073 ! axial vasculature (zebrafish) [Term] id: ZFA:0005026 name: primary head sinus (zebrafish) namespace: zebrafish_anatomy def: "Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel." [ZFIN:ZDB-PUB-010205-5] synonym: "PHS" EXACT [] synonym: "lateral head vein" EXACT [] xref: TAO:0005026 xref: ZFIN:ZDB-ANAT-050915-86 is_a: UBERON:0001638 ! vein relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005027 name: posterior cerebral vein (zebrafish) namespace: zebrafish_anatomy def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata." [ZFIN:ZDB-PUB-010205-5] synonym: "PCeV" EXACT [] synonym: "caudal cerebral vein" EXACT [] xref: TAO:0005027 xref: ZFIN:ZDB-ANAT-050915-87 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0005284 ! brain vasculature [Term] id: ZFA:0005029 name: rostral blood island (zebrafish) namespace: zebrafish_anatomy def: "Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells." [ZFIN:curator] synonym: "RBI" EXACT [] synonym: "anterior myeloid compartment" RELATED [] xref: TAO:0005029 xref: ZFIN:ZDB-ANAT-051116-13 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0009881 ! anterior lateral plate mesoderm relationship: part_of UBERON:0002390 ! hematopoietic system [Term] id: ZFA:0005030 name: dorsal ciliary vein (zebrafish) namespace: zebrafish_anatomy synonym: "DCV" EXACT [] xref: TAO:0005030 xref: ZFIN:ZDB-ANAT-051116-14 is_a: UBERON:0001638 ! vein relationship: develops_from ZFA:0005082 ! dorsal branch nasal ciliary artery (zebrafish) relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005031 name: dorsal longitudinal vein (zebrafish) namespace: zebrafish_anatomy def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata." [ZFIN:ZDB-PUB-010205-5] synonym: "DLV" EXACT [] xref: TAO:0005031 xref: ZFIN:ZDB-ANAT-051116-15 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0005284 ! brain vasculature [Term] id: ZFA:0005032 name: optic vein (zebrafish) namespace: zebrafish_anatomy def: "Vein that connects to the hyaloid vein that drains the eye. External to eye." [ZFIN:ZDB-PUB-010205-5] synonym: "OV" EXACT [] xref: TAO:0005032 xref: ZFIN:ZDB-ANAT-051116-16 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002203 ! vasculature of eye [Term] id: ZFA:0005034 name: parachordal vessel (zebrafish) namespace: zebrafish_anatomy def: "Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf." [ZFIN:ZDB-PUB-030908-4] synonym: "PAV" EXACT [] xref: TAO:0005034 xref: ZFIN:ZDB-ANAT-051116-18 is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0002065 ! postcardinal vein relationship: develops_from UBERON:0007679 ! intersegmental vein relationship: part_of UBERON:0002201 ! vasculature of trunk relationship: part_of UBERON:0010204 ! tail vasculature [Term] id: ZFA:0005036 name: supraintestinal artery (zebrafish) namespace: zebrafish_anatomy def: "A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus." [ZFIN:ZDB-PUB-010205-5] synonym: "SIA" EXACT [] xref: TAO:0005036 xref: ZFIN:ZDB-ANAT-051116-20 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005038 name: supraintestinal vein (zebrafish) namespace: zebrafish_anatomy synonym: "supraintestinal veins" EXACT PLURAL [] xref: TAO:0005038 xref: ZFIN:ZDB-ANAT-051116-22 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0002201 ! vasculature of trunk [Term] id: ZFA:0005039 name: anterior lateral mesoderm (zebrafish) namespace: zebrafish_anatomy synonym: "ALM" EXACT [] xref: TAO:0005039 xref: ZFIN:ZDB-ANAT-051116-23 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0001065 ! lateral mesoderm (zebrafish) [Term] id: ZFA:0005040 name: posterior lateral mesoderm (zebrafish) namespace: zebrafish_anatomy synonym: "PLM" EXACT [] xref: TAO:0005040 xref: ZFIN:ZDB-ANAT-051116-24 is_a: UBERON:0000926 ! mesoderm relationship: part_of ZFA:0001065 ! lateral mesoderm (zebrafish) [Term] id: ZFA:0005043 name: nevus (zebrafish) namespace: zebrafish_anatomy def: "An ectopic melanophore accumulation analogous to a nevi (mole) in humans." [ZFIN:curator] synonym: "f-nevi" EXACT [] synonym: "naevus" EXACT [] xref: TAO:0005043 xref: ZFIN:ZDB-ANAT-051116-27 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002067 ! dermis [Term] id: ZFA:0005044 name: optic artery (zebrafish) namespace: zebrafish_anatomy def: "The artery that carries blood to the eye. It branches from the internal carotid artery and enters the eye ventrally through the optic fissure." [ZFIN:ZDB-PUB-010205-5] synonym: "optic arteries" EXACT PLURAL [] xref: TAO:0005044 xref: ZFIN:ZDB-ANAT-051116-28 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0002203 ! vasculature of eye [Term] id: ZFA:0005048 name: primitive prosencephalic artery (zebrafish) namespace: zebrafish_anatomy def: "Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head." [ZFIN:ZDB-PUB-010205-5] synonym: "PPrA" EXACT [] xref: TAO:0005048 xref: ZFIN:ZDB-ANAT-051116-32 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005049 name: prosencephalic artery (zebrafish) namespace: zebrafish_anatomy def: "After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery." [ZFIN:curator] synonym: "PrA" EXACT [] xref: TAO:0005049 xref: ZFIN:ZDB-ANAT-051116-33 is_a: UBERON:0001637 ! artery relationship: develops_from ZFA:0005048 ! primitive prosencephalic artery (zebrafish) [Term] id: ZFA:0005050 name: palatocerebral artery (zebrafish) namespace: zebrafish_anatomy def: "The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo." [ZFIN:ZDB-PUB-010205-5] synonym: "PLA" EXACT [] xref: TAO:0005050 xref: ZFIN:ZDB-ANAT-051116-34 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005051 name: communicating vessel palatocerebral artery (zebrafish) namespace: zebrafish_anatomy def: "Connect the palatocerebral artery with the prosencephalic artery." [ZFIN:ZDB-PUB-010205-5] synonym: "CMV" EXACT [] synonym: "communicating vessels" EXACT [] xref: TAO:0005051 xref: ZFIN:ZDB-ANAT-051116-35 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005052 name: anterior mesencephalic central artery (zebrafish) namespace: zebrafish_anatomy def: "Arteries that irrigate rostral regions of the midbrain. They extend between the basal communicating artery to the anterior cerebral vein." [ZFIN:ZDB-PUB-010205-5] synonym: "AMCtA" EXACT [] synonym: "rostral mesencephalic central artery" EXACT [] xref: TAO:0005052 xref: ZFIN:ZDB-ANAT-051116-36 is_a: ZFA:0005020 ! central artery (zebrafish) [Term] id: ZFA:0005053 name: nasal ciliary artery (zebrafish) namespace: zebrafish_anatomy synonym: "NCA" EXACT [] xref: TAO:0005053 xref: ZFIN:ZDB-ANAT-051116-37 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005054 name: inner optic circle (zebrafish) namespace: zebrafish_anatomy synonym: "IOC" EXACT [] xref: TAO:0005054 xref: ZFIN:ZDB-ANAT-051116-38 is_a: UBERON:0001637 ! artery relationship: develops_from ZFA:0005082 ! dorsal branch nasal ciliary artery (zebrafish) relationship: develops_from ZFA:0005083 ! ventral branch nasal ciliary artery (zebrafish) relationship: part_of UBERON:0002203 ! vasculature of eye [Term] id: ZFA:0005055 name: median palatocerebral vein (zebrafish) namespace: zebrafish_anatomy def: "Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins." [ZFIN:ZDB-PUB-010205-5] synonym: "MPLV" EXACT [] xref: TAO:0005055 xref: ZFIN:ZDB-ANAT-051116-39 is_a: UBERON:0001638 ! vein relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005056 name: palatocerebral vein (zebrafish) namespace: zebrafish_anatomy def: "Vein that drains the median palatocerebral vein into the optic vein." [ZFIN:ZDB-PUB-010205-5] synonym: "PLV" EXACT [] xref: TAO:0005056 xref: ZFIN:ZDB-ANAT-051116-40 is_a: UBERON:0001638 ! vein relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005066 name: bulbus arteriosus outer layer (zebrafish) namespace: zebrafish_anatomy def: "The portion of tissue that is the outer layer of the bulbus arteriosus. It is composed of scattered layers of interrupted elastic lamina." [ZFIN:ZDB-PUB-010912-30] synonym: "bulbus arteriosus externa" EXACT [] xref: TAO:0005066 xref: ZFIN:ZDB-ANAT-060131-71 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004152 ! bulbus arteriosus [Term] id: ZFA:0005067 name: bulbus arteriosus middle layer (zebrafish) namespace: zebrafish_anatomy def: "Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils." [ZFIN:ZDB-PUB-010912-30] synonym: "bulbus arteriosus media" EXACT [] xref: TAO:0005067 xref: ZFIN:ZDB-ANAT-060131-72 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0004152 ! bulbus arteriosus [Term] id: ZFA:0005068 name: bulbus arteriosus inner layer (zebrafish) namespace: zebrafish_anatomy def: "Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer." [ZFIN:ZDB-PUB-010912-30] synonym: "bulbus arteriosus intima" EXACT [] xref: TAO:0005068 xref: ZFIN:ZDB-ANAT-060131-73 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0004152 ! bulbus arteriosus [Term] id: ZFA:0005072 name: endocardial ring (zebrafish) namespace: zebrafish_anatomy def: "A portion of endocardial tissue that is part of the atrioventricular ring." [ZFIN:curator] xref: TAO:0005072 xref: ZFIN:ZDB-ANAT-060331-65 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002165 ! endocardium relationship: part_of ZFA:0005073 ! atrioventricular ring (zebrafish) [Term] id: ZFA:0005073 name: atrioventricular ring (zebrafish) namespace: zebrafish_anatomy def: "A ring of conduction tissue that forms in the atrioventricular canal." [ZFIN:ZDB-PUB-060227-6] synonym: "AV ring" EXACT [] xref: TAO:0005073 xref: ZFIN:ZDB-ANAT-060331-66 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002087 ! atrioventricular canal relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: ZFA:0005074 name: central cardiac conduction system (zebrafish) namespace: zebrafish_anatomy def: "Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods." [ZFIN:curator] xref: TAO:0005074 xref: ZFIN:ZDB-ANAT-060331-67 is_a: UBERON:0002350 ! conducting system of heart [Term] id: ZFA:0005075 name: peripheral cardiac conduction system (zebrafish) namespace: zebrafish_anatomy def: "Portion of the cardiac conduction system, with rapid impulse propagation." [ZFIN:curator] xref: TAO:0005075 xref: ZFIN:ZDB-ANAT-060331-68 is_a: UBERON:0002350 ! conducting system of heart [Term] id: ZFA:0005076 name: primordial vasculature (zebrafish) namespace: zebrafish_anatomy def: "Is a portion of tissue that will develop into vasculature." [ZFIN:curator] xref: TAO:0005076 xref: ZFIN:ZDB-ANAT-060816-33 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: ZFA:0005078 name: middle mesencephalic central artery (zebrafish) namespace: zebrafish_anatomy def: "Projects rostrally and dorsally from the AMCtA to irrigate the midportion of the midbrain." [ZFIN:ZDB-PUB-010205-5] synonym: "MMCtA" EXACT [] xref: TAO:0005078 xref: ZFIN:ZDB-ANAT-060816-35 is_a: ZFA:0005020 ! central artery (zebrafish) [Term] id: ZFA:0005079 name: posterior mesencephalic central artery (zebrafish) namespace: zebrafish_anatomy def: "Project dorsally from BCA to irrigate the caudal part of midbrain" [ZFIN:ZDB-PUB-010205-5] synonym: "PMCtA" EXACT [] synonym: "caudal mesencephalic central artery" EXACT [] xref: TAO:0005079 xref: ZFIN:ZDB-ANAT-060816-36 is_a: ZFA:0005020 ! central artery (zebrafish) [Term] id: ZFA:0005080 name: anterior mesenteric artery (zebrafish) namespace: zebrafish_anatomy def: "An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery." [ZFIN:ZDB-PUB-010205-5] synonym: "AMA" EXACT [] synonym: "rostral mesenteric artery" EXACT [] xref: TAO:0005080 xref: ZFIN:ZDB-ANAT-060816-37 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005082 name: dorsal branch nasal ciliary artery (zebrafish) namespace: zebrafish_anatomy synonym: "dorsal branch nasal ciliary arteries" EXACT PLURAL [] xref: TAO:0005082 xref: ZFIN:ZDB-ANAT-060816-39 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0005053 ! nasal ciliary artery (zebrafish) [Term] id: ZFA:0005083 name: ventral branch nasal ciliary artery (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005083 xref: ZFIN:ZDB-ANAT-060816-40 is_a: UBERON:0001637 ! artery relationship: part_of ZFA:0005053 ! nasal ciliary artery (zebrafish) [Term] id: ZFA:0005084 name: metencephalic artery (zebrafish) namespace: zebrafish_anatomy def: "These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head." [ZFIN:ZDB-PUB-010205-5] synonym: "metencephalic arteries" EXACT PLURAL [] xref: TAO:0005084 xref: ZFIN:ZDB-ANAT-060816-41 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005085 name: nasal artery (zebrafish) namespace: zebrafish_anatomy def: "The nasal arteries start at the internal carotid artery and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins." [ZFIN:ZDB-PUB-010205-5] synonym: "NA" EXACT [] xref: TAO:0005085 xref: ZFIN:ZDB-ANAT-060816-42 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005087 name: pectoral vein (zebrafish) namespace: zebrafish_anatomy synonym: "PV" EXACT [] xref: TAO:0005087 xref: ZFIN:ZDB-ANAT-060816-44 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0007300 ! fore limb/fin blood vessel [Term] id: ZFA:0005088 name: posterior mesenteric artery (zebrafish) namespace: zebrafish_anatomy def: "Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery." [ZFIN:ZDB-PUB-010205-5] synonym: "PMA" EXACT [] synonym: "caudal mesenteric artery" EXACT [] xref: TAO:0005088 xref: ZFIN:ZDB-ANAT-060816-45 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005089 name: swim bladder artery (zebrafish) namespace: zebrafish_anatomy def: "An elaborate set of vessels that branch off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder." [ZFIN:ZDB-PUB-010205-5] synonym: "SBA" EXACT [] xref: TAO:0005089 xref: ZFIN:ZDB-ANAT-060816-46 is_a: UBERON:0001637 ! artery [Term] id: ZFA:0005093 name: nasal vein (zebrafish) namespace: zebrafish_anatomy synonym: "NV" EXACT [] xref: TAO:0005093 xref: ZFIN:ZDB-ANAT-060816-50 is_a: UBERON:0001638 ! vein relationship: part_of ZFA:0005297 ! cranial blood vessel (zebrafish) [Term] id: ZFA:0005097 name: caudal fin vasculature (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005097 xref: ZFIN:ZDB-ANAT-060816-54 is_a: UBERON:0007304 ! limb/fin vasculature [Term] id: ZFA:0005098 name: central ray artery (zebrafish) namespace: zebrafish_anatomy def: "Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia." [ZFIN:ZDB-PUB-031119-3] synonym: "central ray arteries" EXACT PLURAL [] xref: TAO:0005098 xref: ZFIN:ZDB-ANAT-060816-55 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0007301 ! limb/fin blood vessel [Term] id: ZFA:0005099 name: ray vein (zebrafish) namespace: zebrafish_anatomy def: "Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme." [ZFIN:ZDB-PUB-031119-3] synonym: "ray veins" EXACT PLURAL [] xref: TAO:0005099 xref: ZFIN:ZDB-ANAT-060816-56 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0007301 ! limb/fin blood vessel [Term] id: ZFA:0005100 name: intervessel commissure (zebrafish) namespace: zebrafish_anatomy def: "Vessels that travel between artery and veins or vein and vein in a single ray." [ZFIN:curator] synonym: "intervessel comisures" EXACT PLURAL [] xref: TAO:0005100 xref: ZFIN:ZDB-ANAT-060816-57 is_a: UBERON:0007301 ! limb/fin blood vessel [Term] id: ZFA:0005101 name: interray vessel (zebrafish) namespace: zebrafish_anatomy def: "Vessels that travel between veins in adjacent rays." [ZFIN:curator] synonym: "interray vessels" EXACT PLURAL [] xref: TAO:0005101 xref: ZFIN:ZDB-ANAT-060816-58 is_a: UBERON:0007301 ! limb/fin blood vessel [Term] id: ZFA:0005102 name: presumptive median fin fold (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005102 xref: ZFIN:ZDB-ANAT-060816-59 is_a: UBERON:0006598 ! presumptive structure [Term] id: ZFA:0005103 name: presumptive ventral fin fold (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005103 xref: ZFIN:ZDB-ANAT-060816-60 is_a: ZFA:0005102 ! presumptive median fin fold (zebrafish) [Term] id: ZFA:0005104 name: presumptive dorsal fin fold (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005104 xref: ZFIN:ZDB-ANAT-060816-61 is_a: ZFA:0005102 ! presumptive median fin fold (zebrafish) [Term] id: ZFA:0005106 name: longitudinal lateral lymphatic vessel (zebrafish) namespace: zebrafish_anatomy synonym: "LLL" EXACT [] xref: TAO:0005106 xref: ZFIN:ZDB-ANAT-060816-63 is_a: UBERON:0004536 ! lymph vasculature [Term] id: ZFA:0005113 name: dorsal lateral line neuromast (zebrafish) namespace: zebrafish_anatomy def: "Neuromast that is part of the dorsal lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) " [ZFIN:ZDB-PUB-961014-576] synonym: "neuromast dorsal" EXACT [] xref: TAO:0005113 xref: ZFIN:ZDB-ANAT-061211-17 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003095 ! dorsal lateral line [Term] id: ZFA:0005114 name: middle lateral line system (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005114 xref: ZFIN:ZDB-ANAT-061211-18 is_a: UBERON:0002540 ! lateral line system [Term] id: ZFA:0005115 name: primary posterior lateral line primordium (zebrafish) namespace: zebrafish_anatomy def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [ZFIN:curator] synonym: "primI" EXACT [] synonym: "primary posterior lateral line primordia" EXACT PLURAL [] xref: TAO:0005115 xref: ZFIN:ZDB-ANAT-061211-19 is_a: ZFA:0001157 ! posterior lateral line primordium (zebrafish) relationship: develops_from ZFA:0001156 ! posterior lateral line placode (zebrafish) [Term] id: ZFA:0005116 name: secondary posterior lateral line primordium (zebrafish) namespace: zebrafish_anatomy def: "Second lateral line primordium. These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction." [ZFIN:curator] synonym: "secondary posterior lateral line primordia" EXACT PLURAL [] xref: TAO:0005116 xref: ZFIN:ZDB-ANAT-061211-20 is_a: ZFA:0001157 ! posterior lateral line primordium (zebrafish) [Term] id: ZFA:0005117 name: anterior lateral line primordium (zebrafish) namespace: zebrafish_anatomy def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [ZFIN:curator] synonym: "anterior lateral line primordia" EXACT PLURAL [] xref: TAO:0005117 xref: ZFIN:ZDB-ANAT-061211-21 is_a: ZFA:0000228 ! lateral line primordium (zebrafish) relationship: part_of ZFA:0001468 ! anterior lateral line system (zebrafish) [Term] id: ZFA:0005118 name: middle lateral line primordium (zebrafish) namespace: zebrafish_anatomy def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [ZFIN:curator] synonym: "middle lateral line primordia" EXACT PLURAL [] xref: TAO:0005118 xref: ZFIN:ZDB-ANAT-061211-22 is_a: ZFA:0000228 ! lateral line primordium (zebrafish) relationship: part_of ZFA:0005114 ! middle lateral line system (zebrafish) [Term] id: ZFA:0005119 name: barbel primordium (zebrafish) namespace: zebrafish_anatomy def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [ZFIN:curator] synonym: "barbel primordia" EXACT PLURAL [] xref: TAO:0005119 xref: ZFIN:ZDB-ANAT-070517-30 is_a: UBERON:0003102 ! surface structure [Term] id: ZFA:0005121 name: middle lateral line placode (zebrafish) namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the middle lateral line." [ZFIN:curator] synonym: "middle lateral line placodes" EXACT PLURAL [] xref: TAO:0005121 xref: ZFIN:ZDB-ANAT-061211-23 is_a: UBERON:0003067 ! dorsolateral placode relationship: part_of ZFA:0005114 ! middle lateral line system (zebrafish) [Term] id: ZFA:0005122 name: dorsal axial hypoblast (zebrafish) namespace: zebrafish_anatomy def: "Dorsal region of the axial hypoblast." [ZFIN:Curator] xref: TAO:0005122 xref: ZFIN:ZDB-ANAT-061211-24 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0001378 ! axial hypoblast (zebrafish) [Term] id: ZFA:0005126 name: intestinal bulb epithelium (zebrafish) namespace: zebrafish_anatomy def: "Intestinal epithelium which lines the lumen of the intestinal bulb." [ZFIN:curator] xref: TAO:0005126 xref: ZFIN:ZDB-ANAT-061211-28 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of ZFA:0001076 ! intestinal bulb (zebrafish) [Term] id: ZFA:0005135 name: primary dental epithelium (zebrafish) namespace: zebrafish_anatomy def: "Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth." [ZFIN:curator] synonym: "pharyngeal tooth epithelium" EXACT [] synonym: "tooth epithelium" EXACT [] xref: TAO:0005135 xref: ZFIN:ZDB-ANAT-070517-38 is_a: UBERON:0003843 ! dental epithelium [Term] id: ZFA:0005144 name: ampullary nerve (zebrafish) namespace: zebrafish_anatomy def: "Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris." [ZFIN:curator] synonym: "ampullary nerves" EXACT PLURAL [] xref: TAO:0005144 xref: ZFIN:ZDB-ANAT-070517-47 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: ZFA:0005149 name: distal epidermal cap (zebrafish) namespace: zebrafish_anatomy def: "Part of regeneration epithelium at the tip of the fin." [ZFIN:curator] synonym: "distal epidermal caps" EXACT PLURAL [] xref: TAO:0005149 xref: ZFIN:ZDB-ANAT-070928-185 is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of ZFA:0001389 ! regeneration epithelium (zebrafish) [Term] id: ZFA:0005150 name: basal regeneration epithelium (zebrafish) namespace: zebrafish_anatomy def: "Layer of the wound epidermis that surrounds the blastema." [ZFIN:curator] synonym: "basal wound epidermis" EXACT [] xref: TAO:0005150 xref: ZFIN:ZDB-ANAT-070928-186 is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of ZFA:0001389 ! regeneration epithelium (zebrafish) [Term] id: ZFA:0005151 name: gold iridophore (zebrafish) namespace: zebrafish_anatomy def: "Iridescent iridophore containing gold reflecting platelets." [ZFIN:curator] subset: cell_slim ! cell_slim xref: TAO:0005151 xref: ZFIN:ZDB-ANAT-090922-193 is_a: CL:0000431 ! iridophore [Term] id: ZFA:0005152 name: silver iridophore (zebrafish) namespace: zebrafish_anatomy def: "Iridescent iridophore containing silver reflecting platelets." [ZFIN:curator] subset: cell_slim ! cell_slim xref: TAO:0005152 xref: ZFIN:ZDB-ANAT-090922-194 is_a: CL:0000431 ! iridophore [Term] id: ZFA:0005170 name: extrahepatic duct (zebrafish) namespace: zebrafish_anatomy def: "Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct." [ZFIN:curator] xref: TAO:0005170 xref: ZFIN:ZDB-ANAT-090922-212 is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0005171 ! hepatic duct [Term] id: ZFA:0005174 name: ventral liver lobe (zebrafish) namespace: zebrafish_anatomy def: "Portion of the liver which develops on the fish's ventral side." [ZFIN:curator] synonym: "3rd lobe" EXACT [] synonym: "third lobe" EXACT [] xref: TAO:0005174 xref: ZFIN:ZDB-ANAT-090922-216 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002107 ! liver [Term] id: ZFA:0005175 name: CoPA (zebrafish) namespace: zebrafish_anatomy def: "An interneuron in the spinal cord. CoPA are bipolar with \"T\" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-274, ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. synonym: "primary commissural interneuron" EXACT [] xref: TAO:0005175 xref: ZFIN:ZDB-ANAT-090922-217 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005176 name: CoSA (zebrafish) namespace: zebrafish_anatomy def: "An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. synonym: "secondary commissural interneuron" EXACT [] xref: TAO:0005176 xref: ZFIN:ZDB-ANAT-090922-218 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005177 name: VeLD (zebrafish) namespace: zebrafish_anatomy def: "An interneuron of the spinal cord. VeLD neurons have an ipsilateral longitudinal axon." [ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. synonym: "V2b interneuron" RELATED [] synonym: "ventral longitudinal interneuron" EXACT [] xref: TAO:0005177 xref: ZFIN:ZDB-ANAT-090922-219 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005178 name: DoLA (zebrafish) namespace: zebrafish_anatomy def: "An interneuron of the spinal cord." [ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. synonym: "dorsal longitudinal interneuron" EXACT [] xref: TAO:0005178 xref: ZFIN:ZDB-ANAT-090922-220 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005179 name: MiP motor neuron (zebrafish) namespace: zebrafish_anatomy def: "A primary motor neuron that is part of the spinal cord. The axon turns caudally and dorsally, coursing between the surface of the spinal cord and the medial surface of the axial muscles to the dorsal median septum. The MiP axon then extends dorsally to the surface of the muscle, where it turns to arborize ventrally over the lateral surface of the axial muscle." [ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-814] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim ! cell_slim synonym: "middle primary motoneuron" EXACT [] xref: TAO:0005179 xref: ZFIN:ZDB-ANAT-090922-221 is_a: CL:0000533 ! primary motor neuron [Term] id: ZFA:0005180 name: RoP motor neuron (zebrafish) namespace: zebrafish_anatomy def: "A primary motoneuron that is part of the spinal cord. The axon of the CaP motoneuron on emerging from the ventral root. At the horizontal septum, however, the RoP axon turns laterally to extend within the horizontal septum to the lateral surface of the muscle." [ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-814] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim ! cell_slim synonym: "rostral primary motoneuron" EXACT [] xref: TAO:0005180 xref: ZFIN:ZDB-ANAT-090922-222 is_a: CL:0000533 ! primary motor neuron [Term] id: ZFA:0005181 name: VaP motor neuron (zebrafish) namespace: zebrafish_anatomy def: "A primary motor neuron of the spinal cord. This cell is present in slightly less than half of the trunk hemisegments. Additionally, this cell has at least 2 different fates: it may become a primary motoneuron and arborize in an exclusive muscle territory, or it may die during embryonic development." [ZFIN:ZDB-PUB-961014-265, ZFIN:ZDB-PUB-961014-276] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim ! cell_slim synonym: "variable primary motoneuron" EXACT [] xref: TAO:0005181 xref: ZFIN:ZDB-ANAT-090922-223 is_a: CL:0000533 ! primary motor neuron [Term] id: ZFA:0005182 name: t-interneuron (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is located in the caudal hindbrain. The T interneurons are reticular neurons named after the branching pattern of their axons. The T axons project across the midline, and branches course both rostrally and caudally within the medial longitudinal fascicle (mlf). The cells receive synaptic input from the Mauthner neurons, from unidentified axons in the mlf, and perhaps from trigeminal sensory fibers. They project to cranial and pectoral motor nuclei." [ZFIN:ZDB-PUB-961014-588] comment: This term is a leaf node in the zebrafish AO and is not in the CL. xref: TAO:0005182 xref: ZFIN:ZDB-ANAT-090922-224 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) [Term] id: ZFA:0005183 name: MiD2i (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 5 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 ipsilateral interneuron " EXACT [] xref: TAO:0005183 xref: ZFIN:ZDB-ANAT-090922-225 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: ZFA:0005184 name: MiD2cl (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 contralateral llf interneuron " EXACT [] xref: TAO:0005184 xref: ZFIN:ZDB-ANAT-090922-226 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: ZFA:0005185 name: MiD2cm (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 contralateral mlf interneuron " EXACT [] xref: TAO:0005185 xref: ZFIN:ZDB-ANAT-090922-227 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: ZFA:0005186 name: CoB (zebrafish) namespace: zebrafish_anatomy def: "A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body." [ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL.nnThis may be the same as CoBL synonym: "bifurcate commissural interneuron" EXACT [] xref: TAO:0005186 xref: ZFIN:ZDB-ANAT-090922-228 is_a: ZFA:0005231 ! bifurcate interneuron (zebrafish) [Term] id: ZFA:0005187 name: MiM1 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 4, with one medial neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "middle medial interneuron " EXACT [] xref: TAO:0005187 xref: ZFIN:ZDB-ANAT-090922-229 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005511 ! rhombomere 4 [Term] id: ZFA:0005188 name: MiR1 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 4 with one rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "middle rostral 1 interneuron " EXACT [] xref: TAO:0005188 xref: ZFIN:ZDB-ANAT-090922-230 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005511 ! rhombomere 4 [Term] id: ZFA:0005189 name: MiR2 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 5 with one rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "middle rostral 2 interneuron " EXACT [] xref: TAO:0005189 xref: ZFIN:ZDB-ANAT-090922-231 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: ZFA:0005190 name: MiV1 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 4 with six ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "middle ventral 1 neuron " EXACT [] xref: TAO:0005190 xref: ZFIN:ZDB-ANAT-090922-232 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005511 ! rhombomere 4 [Term] id: ZFA:0005191 name: MiV2 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 5 with five ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "middle ventral 2 neuron " EXACT [] xref: TAO:0005191 xref: ZFIN:ZDB-ANAT-090922-233 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005515 ! rhombomere 5 [Term] id: ZFA:0005192 name: RoI2C (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with two intermediate-caudal neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral intermediate 2 caudal interneuron " EXACT [] xref: TAO:0005192 xref: ZFIN:ZDB-ANAT-090922-234 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: ZFA:0005193 name: RoI2R (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with one intermediate-rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral intermediate 2 rostral interneuron " EXACT [] xref: TAO:0005193 xref: ZFIN:ZDB-ANAT-090922-235 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: ZFA:0005194 name: RoL1 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 1 with twelve neurons in each hemi-rhombomere. Axon runs in the dorsal spinal cord. The RoL1 stem axon projects ipsilaterally along the brain stem and spinal cord. From the more lateral location of its spinal axon, RoL1's collaterals projected both ventrally and medially. The branching of RoL1 collaterals within the medulla, occur at multiple levels." [ZFIN:ZDB-PUB-030319-6, ZFIN:ZDB-PUB-961014-770] comment: May have 12 neurons in each hemi rhombomere ZDB-PUB-060217-9n7 neurons in each hemi rhombomere 080227-17 and 931014-770 synonym: "rostral lateral 1 interneuron " EXACT [] xref: TAO:0005194 xref: ZFIN:ZDB-ANAT-090922-236 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005499 ! rhombomere 1 [Term] id: ZFA:0005195 name: MiD3cl (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 6, with one caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 contralateral llf interneuron " EXACT [] xref: TAO:0005195 xref: ZFIN:ZDB-ANAT-090922-237 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005519 ! rhombomere 6 [Term] id: ZFA:0005196 name: MiD3cm (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 6, with one caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 contralateral mlf interneuron " EXACT [] xref: TAO:0005196 xref: ZFIN:ZDB-ANAT-090922-238 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005519 ! rhombomere 6 [Term] id: ZFA:0005197 name: MiD3i (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 6 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 ipsilateral interneuron " EXACT [] xref: TAO:0005197 xref: ZFIN:ZDB-ANAT-090922-239 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005519 ! rhombomere 6 [Term] id: ZFA:0005198 name: RoL2 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with 4 lateral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral lateral 2 interneuron " EXACT [] xref: TAO:0005198 xref: ZFIN:ZDB-ANAT-090922-240 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: ZFA:0005199 name: RoL2r (zebrafish) namespace: zebrafish_anatomy def: "A RoL2 interneuron that is part of rhombomere 2." [ZFIN:ZDB-PUB-090217-9] synonym: "rostral lateral 2 rostral interneuron " EXACT [] xref: TAO:0005199 xref: ZFIN:ZDB-ANAT-090922-241 is_a: ZFA:0005198 ! RoL2 (zebrafish) relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: ZFA:0005200 name: RoL2c (zebrafish) namespace: zebrafish_anatomy def: "A RoL2 interneuron that is part of rhombomere 2." [ZFIN:ZDB-PUB-090217-9] synonym: "rostral lateral 2 caudal interneuron " EXACT [] xref: TAO:0005200 xref: ZFIN:ZDB-ANAT-090922-242 is_a: ZFA:0005198 ! RoL2 (zebrafish) relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: ZFA:0005201 name: RoL3 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 3 with 1 lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral lateral 3 interneuron " EXACT [] xref: TAO:0005201 xref: ZFIN:ZDB-ANAT-090922-243 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005507 ! rhombomere 3 [Term] id: ZFA:0005202 name: RoM1c (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 1 with one medial-caudal neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral medial 1 caudal interneuron " EXACT [] xref: TAO:0005202 xref: ZFIN:ZDB-ANAT-090922-244 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005499 ! rhombomere 1 [Term] id: ZFA:0005203 name: RoM1r (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 1 with one medial-rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral medial 1 rostral interneuron " EXACT [] xref: TAO:0005203 xref: ZFIN:ZDB-ANAT-090922-245 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005499 ! rhombomere 1 [Term] id: ZFA:0005204 name: RoV3 (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 3 with three ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral ventral 3 interneuron " EXACT [] xref: ZFIN:ZDB-ANAT-090922-246 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005507 ! rhombomere 3 [Term] id: ZFA:0005205 name: RoM2l (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with one medial-lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral medial 2 lateral interneuron " EXACT [] xref: TAO:0005205 xref: ZFIN:ZDB-ANAT-090922-247 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: ZFA:0005206 name: RoM2m (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with one medial neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral medial 2 medial interneuron " EXACT [] xref: TAO:0005206 xref: ZFIN:ZDB-ANAT-090922-248 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005569 ! rhombomere 2 [Term] id: ZFA:0005207 name: RoM3l (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 3 with one lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral medial 3 lateral interneuron " EXACT [] xref: TAO:0005207 xref: ZFIN:ZDB-ANAT-090922-249 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005507 ! rhombomere 3 [Term] id: ZFA:0005208 name: RoM3m (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 32 with two medial neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "rostral medial 3 medial interneuron " RELATED [] xref: TAO:0005208 xref: ZFIN:ZDB-ANAT-090922-250 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005507 ! rhombomere 3 [Term] id: ZFA:0005209 name: hindbrain interneuron (zebrafish) namespace: zebrafish_anatomy def: "Is a CNS interneuron that is part of the hindbrain." [ZFIN:Curator] xref: TAO:0005209 xref: ZFIN:ZDB-ANAT-090922-251 is_a: CL:0000402 ! CNS interneuron relationship: part_of UBERON:0002028 ! hindbrain [Term] id: ZFA:0005210 name: midbrain interneuron (zebrafish) namespace: zebrafish_anatomy def: "CNS interneurons located in the midbrain." [ZFIN:Curator] xref: TAO:0005210 xref: ZFIN:ZDB-ANAT-090922-252 is_a: CL:0000402 ! CNS interneuron [Term] id: ZFA:0005211 name: MeL (zebrafish) namespace: zebrafish_anatomy def: "Midbrain interneuron in the lateral midbrain." [ZFIN:ZDB-PUB-961014-758] synonym: "mesencephalon lateral interneuron" EXACT [] xref: TAO:0005211 xref: ZFIN:ZDB-ANAT-090922-253 is_a: ZFA:0005210 ! midbrain interneuron (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0005212 name: MeM (zebrafish) namespace: zebrafish_anatomy def: "Midbrain interneuron located in the medial midbrain." [ZFIN:ZDB-PUB-961014-758] synonym: "mesencephalon medial interneuron" EXACT [] xref: TAO:0005212 xref: ZFIN:ZDB-ANAT-090922-254 is_a: ZFA:0005210 ! midbrain interneuron (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0005213 name: MeLr (zebrafish) namespace: zebrafish_anatomy def: "Midbrain interneuron at the rostral position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9] synonym: "mesencephalon lateral rostral interneuron" EXACT [] xref: TAO:0005213 xref: ZFIN:ZDB-ANAT-090922-255 is_a: ZFA:0005210 ! midbrain interneuron (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0005214 name: MeLc (zebrafish) namespace: zebrafish_anatomy def: "Midbrain interneuron at the caudal position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9] synonym: "mesencephalon lateral caudal interneuron" EXACT [] xref: TAO:0005214 xref: ZFIN:ZDB-ANAT-090922-256 is_a: ZFA:0005210 ! midbrain interneuron (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0005215 name: MeLm (zebrafish) namespace: zebrafish_anatomy def: "Midbrain interneuron at the medial position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9] synonym: "mesencephalon lateral medial interneuron" EXACT [] xref: TAO:0005215 xref: ZFIN:ZDB-ANAT-090922-257 is_a: ZFA:0005210 ! midbrain interneuron (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0005216 name: MeM1 (zebrafish) namespace: zebrafish_anatomy def: "Midbrain interneuron located in the medial midbrain." [ZFIN:ZDB-PUB-090217-9] synonym: "mesencephalon medial 1 interneuron" EXACT [] xref: TAO:0005216 xref: ZFIN:ZDB-ANAT-090922-258 is_a: ZFA:0005210 ! midbrain interneuron (zebrafish) relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0005217 name: CaV (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "caudal ventral interneuron" EXACT [] xref: TAO:0005217 xref: ZFIN:ZDB-ANAT-090922-259 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005523 ! rhombomere 7 [Term] id: ZFA:0005218 name: CaD (zebrafish) namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 7, with 1 dorsal neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "caudal dorsal interneuron" EXACT [] xref: TAO:0005218 xref: ZFIN:ZDB-ANAT-090922-260 is_a: ZFA:0005209 ! hindbrain interneuron (zebrafish) relationship: part_of UBERON:0005523 ! rhombomere 7 [Term] id: ZFA:0005219 name: choroid plexus vascular circuit (zebrafish) namespace: zebrafish_anatomy def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11] synonym: "CVC" EXACT [] synonym: "choroid vascular circuit" RELATED [] xref: TAO:0005219 xref: ZFIN:ZDB-ANAT-090922-261 is_a: UBERON:0005284 ! brain vasculature relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: ZFA:0005220 name: larval melanophore stripe (zebrafish) namespace: zebrafish_anatomy def: "A melanophore stripe that forms the immature pigment pattern." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005220 xref: ZFIN:ZDB-ANAT-090922-262 is_a: ZFA:0001463 ! melanophore stripe (zebrafish) [Term] id: ZFA:0005221 name: dorsal larval melanophore stripe (zebrafish) namespace: zebrafish_anatomy def: "A larval melanophore stripe that forms a band extending from the head to the tail along the dorsal apex of the myotomes." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005221 xref: ZFIN:ZDB-ANAT-090922-263 is_a: ZFA:0005220 ! larval melanophore stripe (zebrafish) [Term] id: ZFA:0005222 name: ventral larval melanophore stripe (zebrafish) namespace: zebrafish_anatomy def: "A larval melanophore stripe that forms a band, of pigmentation extending from the bases of the eyes on each side of the midline to the top of the tail, that underlies the myotomes bilaterally, still is dorsal to the yolk." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005222 xref: ZFIN:ZDB-ANAT-090922-264 is_a: ZFA:0005220 ! larval melanophore stripe (zebrafish) [Term] id: ZFA:0005223 name: lateral larval melanophore stripe (zebrafish) namespace: zebrafish_anatomy def: "The larval melanophore stripe that is at the level of the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005223 xref: ZFIN:ZDB-ANAT-090922-265 is_a: ZFA:0005220 ! larval melanophore stripe (zebrafish) [Term] id: ZFA:0005224 name: yolk larval melanophore stripe (zebrafish) namespace: zebrafish_anatomy def: "The larval melanophore stripe that forms a band over the ventral surface of the yolk sac." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005224 xref: ZFIN:ZDB-ANAT-090922-266 is_a: ZFA:0005220 ! larval melanophore stripe (zebrafish) [Term] id: ZFA:0005227 name: protoneuromast (zebrafish) namespace: zebrafish_anatomy def: "A group of about 20 cells deposited by the migrating lateral line primordium. A few hours after deposition these cells mature to form the neuromast." [ZFIN:ZDB-PUB-070907-34, ZFIN:ZDB-PUB-080630-20] synonym: "immature neuromast" RELATED [] synonym: "proto neuromast" RELATED [] synonym: "proto-neuromast" RELATED [] xref: TAO:0005227 xref: ZFIN:ZDB-ANAT-090922-269 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002540 ! lateral line system [Term] id: ZFA:0005230 name: CoBL (zebrafish) namespace: zebrafish_anatomy def: "A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally." [ZFIN:ZDB-PUB-010807-17] synonym: "commissural bifurcating longitudinal" EXACT [] xref: TAO:0005230 xref: ZFIN:ZDB-ANAT-090922-271 is_a: ZFA:0005231 ! bifurcate interneuron (zebrafish) [Term] id: ZFA:0005231 name: bifurcate interneuron (zebrafish) namespace: zebrafish_anatomy def: "Is a spinal interneuron that has an axon that splits into roughly equal size branches." [ZFIN:Curator] xref: TAO:0005231 xref: ZFIN:ZDB-ANAT-090922-272 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005232 name: MCoD (zebrafish) namespace: zebrafish_anatomy def: "A multipolar interneuron with branching dendrites. The axon extend ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally." [ZFIN:ZDB-PUB-010807-17] synonym: "larval VeLD" RELATED [] synonym: "multipolar commissural descending interneuron" EXACT [] xref: TAO:0005232 xref: ZFIN:ZDB-ANAT-090922-273 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005233 name: CiD (zebrafish) namespace: zebrafish_anatomy def: "A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch." [ZFIN:ZDB-PUB-010807-17] synonym: "V2a interneuron" RELATED [] synonym: "circumferential descending interneuron" EXACT [] synonym: "commissural decending interneurons" EXACT [ZFIN:ZDB-PUB-081114-2] xref: TAO:0005233 xref: ZFIN:ZDB-ANAT-090922-274 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005234 name: CoLA (zebrafish) namespace: zebrafish_anatomy def: "A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch." [ZFIN:ZDB-PUB-010807-17] synonym: "commissural longitudinal ascending interneuron" EXACT [] xref: TAO:0005234 xref: ZFIN:ZDB-ANAT-090922-275 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005235 name: UCoD (zebrafish) namespace: zebrafish_anatomy def: "A unipolar spinal interneuron that forms dendritic trunk laterally with extensive dendritic branching. The axon extends ventrally, lateral to the Mauthner axons before crssoing the cord and descending ventrally." [ZFIN:ZDB-PUB-010807-17] synonym: "unipolar commissural descending interneuron" RELATED [] xref: TAO:0005235 xref: ZFIN:ZDB-ANAT-090922-276 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005239 name: micropylar cell (zebrafish) namespace: zebrafish_anatomy def: "Is a specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg." [ZFIN:ZDB-PUB-080630-14] subset: cell_slim ! cell_slim synonym: "plug cell" EXACT [] xref: TAO:0005239 xref: ZFIN:ZDB-ANAT-090922-280 is_a: CL:0000000 ! cell relationship: part_of UBERON:0001305 ! ovarian follicle [Term] id: ZFA:0005246 name: regeneration fibroblast (zebrafish) namespace: zebrafish_anatomy def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [ZFIN:curator] subset: cell_slim ! cell_slim synonym: "blastemal fibroblast" EXACT [] synonym: "blastemal fibroblasts" EXACT PLURAL [] xref: TAO:0005246 xref: ZFIN:ZDB-ANAT-090922-287 is_a: CL:0000057 ! fibroblast relationship: part_of UBERON:0007567 ! regenerating anatomical structure [Term] id: ZFA:0005247 name: CiA (zebrafish) namespace: zebrafish_anatomy def: "Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord." [ZFIN:ZDB-PUB-040625-12, ZFIN:ZDB-PUB-060418-1] synonym: "V1 interneuron" RELATED [] synonym: "circumferential ascending interneuron" EXACT [] xref: TAO:0005247 xref: ZFIN:ZDB-ANAT-090922-288 is_a: CL:0005000 ! spinal cord interneuron [Term] id: ZFA:0005248 name: trans-choroid plexus branch (zebrafish) namespace: zebrafish_anatomy def: "Vein segment that connects the PCeVs in the choroid plexus." [ZFIN:ZDB-PUB-080908-10] synonym: "TCB" EXACT [ZFIN:ZDB-PUB-080908-10] xref: TAO:0005248 xref: ZFIN:ZDB-ANAT-091221-26 is_a: UBERON:0001638 ! vein relationship: develops_from ZFA:0005027 ! posterior cerebral vein (zebrafish) relationship: part_of ZFA:0005219 ! choroid plexus vascular circuit (zebrafish) [Term] id: ZFA:0005251 name: microcirculatory vessel (zebrafish) namespace: zebrafish_anatomy def: "A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels." [ZFIN:curator] synonym: "vasculature" RELATED [] xref: TAO:0005251 xref: ZFIN:ZDB-ANAT-091221-29 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002049 ! vasculature [Term] id: ZFA:0005256 name: intervillus pockets (zebrafish) namespace: zebrafish_anatomy def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] synonym: "intestinal crypt" RELATED [ZFIN:ZDB-PUB-090217-11] xref: TAO:0005256 xref: ZFIN:ZDB-ANAT-100205-323 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001277 ! intestinal epithelium [Term] id: ZFA:0005259 name: continuous blood vessel endothelium (zebrafish) namespace: zebrafish_anatomy def: "Blood vessel endothelium that has tight junctions between the endothelial cells." [ZFIN:curator] xref: TAO:0005259 xref: ZFIN:ZDB-ANAT-091221-36 is_a: UBERON:0004638 ! blood vessel endothelium [Term] id: ZFA:0005260 name: fenestrated blood vessel endothelium (zebrafish) namespace: zebrafish_anatomy def: "Blood vessel endothelium that has pores that allow passage small molecules and proteins." [ZFIN:curator] xref: TAO:0005260 xref: ZFIN:ZDB-ANAT-091221-37 is_a: UBERON:0004638 ! blood vessel endothelium [Term] id: ZFA:0005262 name: caudal fin dorsal procurrent ray (zebrafish) namespace: zebrafish_anatomy def: "Caudal procurrent ray that is dorsally located on the caudal fin skeleton." [TAO:curator] synonym: "dorsal procurrent caudal-fin ray" EXACT [] xref: TAO:0001829 xref: ZFIN:ZDB-ANAT-091221-39 is_a: ZFA:0001584 ! caudal fin procurrent ray (zebrafish) [Term] id: ZFA:0005263 name: caudal fin ventral procurrent ray (zebrafish) namespace: zebrafish_anatomy def: "Caudal procurrent ray that is ventrally located on the caudal fin skeleton." [TAO:curator] synonym: "ventral procurrent ray" EXACT [] xref: TAO:0001830 xref: ZFIN:ZDB-ANAT-091221-40 is_a: ZFA:0001584 ! caudal fin procurrent ray (zebrafish) [Term] id: ZFA:0005264 name: primordial ligament (zebrafish) namespace: zebrafish_anatomy def: "Ligament that connects the maxilla with the lower jaw" [TAO:curator] synonym: "articular-maxillary ligament " EXACT [doi:10.1111/j.1096-3642.1964.tb00493.x] synonym: "ligamentum primordiale " EXACT [] synonym: "maxillo-mandibular ligament" EXACT [] xref: TAO:0001828 xref: ZFIN:ZDB-ANAT-091221-41 is_a: UBERON:0008846 ! skeletal ligament [Term] id: ZFA:0005265 name: premaxillary-maxillary ligament (zebrafish) namespace: zebrafish_anatomy def: "Ligament that connects the premaxilla to the maxilla." [TAO:curator] xref: TAO:0001827 xref: ZFIN:ZDB-ANAT-091221-42 is_a: UBERON:0008846 ! skeletal ligament [Term] id: ZFA:0005267 name: erector muscle (zebrafish) namespace: zebrafish_anatomy def: "Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle." [ZFIN:curator] xref: TAO:0005267 xref: ZFIN:ZDB-ANAT-091221-44 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: ZFA:0005270 name: depressor muscle (zebrafish) namespace: zebrafish_anatomy def: "A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle." [ZFIN:curator] xref: TAO:0005270 xref: ZFIN:ZDB-ANAT-091221-47 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: ZFA:0005272 name: immature gonad (zebrafish) namespace: zebrafish_anatomy def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes." [ZFIN:ZDB-PUB-070305-2] synonym: "juvenile gonad" EXACT [] synonym: "juvenile ovary" EXACT [ZFIN:ZDB-PUB-070305-2] xref: TAO:0005272 xref: ZFIN:ZDB-ANAT-091221-49 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0005564 ! gonad primordium relationship: part_of UBERON:0000990 ! reproductive system [Term] id: ZFA:0005273 name: intestinal mucosal muscle (zebrafish) namespace: zebrafish_anatomy def: "A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold." [ZFIN:ZDB-PUB-090217-11] synonym: "intestinal lamina muscularis mucosae" RELATED [http:www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] xref: TAO:0005273 xref: ZFIN:ZDB-ANAT-100205-324 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0000160 ! intestine [Term] id: ZFA:0005275 name: arrector muscle (zebrafish) namespace: zebrafish_anatomy xref: TAO:0002147 xref: ZFIN:ZDB-ANAT-100205-326 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: ZFA:0005276 name: inclinator muscle (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005276 xref: ZFIN:ZDB-ANAT-100205-327 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: ZFA:0005278 name: enteric longitudinal muscle (zebrafish) namespace: zebrafish_anatomy def: "Smooth muscle of the enteric muscle system in which the cells are aligned parallel to the lumen of the gut." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-100205-329 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of ZFA:0001324 ! enteric musculature (zebrafish) [Term] id: ZFA:0005279 name: enteric circular muscle (zebrafish) namespace: zebrafish_anatomy def: "Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut." [ZFIN:curator] xref: TAO:0005279 xref: ZFIN:ZDB-ANAT-100205-330 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of ZFA:0001324 ! enteric musculature (zebrafish) [Term] id: ZFA:0005292 name: distal late tubule (zebrafish) namespace: zebrafish_anatomy def: "Portion of the renal tubule which is just posterior to the distal early tubule." [ZFIN:curator] xref: TAO:0005292 xref: ZFIN:ZDB-ANAT-100205-343 is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0001231 ! nephron tubule [Term] id: ZFA:0005295 name: axial blood vessel (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005295 xref: ZFIN:ZDB-ANAT-100205-346 is_a: ZFA:0001073 ! axial vasculature (zebrafish) [Term] id: ZFA:0005296 name: axial lymph vessel (zebrafish) namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-100205-347 is_a: ZFA:0001073 ! axial vasculature (zebrafish) relationship: part_of UBERON:0004536 ! lymph vasculature [Term] id: ZFA:0005297 name: cranial blood vessel (zebrafish) namespace: zebrafish_anatomy def: "Blood vessel part of cranial vasculature." [ZFIN:curator] xref: TAO:0005297 xref: ZFIN:ZDB-ANAT-100205-348 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: ZFA:0005298 name: cranial lymph vessel (zebrafish) namespace: zebrafish_anatomy def: "Lymph vessel that is located in the head." [ZFIN:curator] xref: TAO:0005298 xref: ZFIN:ZDB-ANAT-100205-349 is_a: UBERON:0004536 ! lymph vasculature relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: ZFA:0005303 name: caudal fin lymph vessel (zebrafish) namespace: zebrafish_anatomy def: "Lymph vessel that is located in the caudal fin." [ZFIN:curator] xref: TAO:0005303 xref: ZFIN:ZDB-ANAT-100205-354 is_a: UBERON:0007384 ! limb/fin lymph vessel relationship: part_of UBERON:0004536 ! lymph vasculature relationship: part_of ZFA:0005097 ! caudal fin vasculature (zebrafish) [Term] id: ZFA:0005304 name: caudal fin blood vessel (zebrafish) namespace: zebrafish_anatomy xref: TAO:0005304 xref: ZFIN:ZDB-ANAT-100205-355 is_a: UBERON:0007301 ! limb/fin blood vessel relationship: part_of ZFA:0005097 ! caudal fin vasculature (zebrafish) [Term] id: ZFA:0005311 name: pronephric glomerular capsule epithelium (zebrafish) namespace: zebrafish_anatomy def: "Simple squamous epithelium that lines the capsule of the pronephric glomerulus." [ZFIN:curator] synonym: "pronephric parietal epithelial layer" EXACT [] xref: TAO:0005311 xref: ZFIN:ZDB-ANAT-100205-362 is_a: UBERON:0000487 ! simple squamous epithelium relationship: part_of UBERON:0001230 ! glomerular capsule [Term] id: ZFA:0005316 name: fin fold pectoral fin bud (zebrafish) namespace: zebrafish_anatomy def: "Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold." [ZFIN:ZDB-PUB-001101-7, ZFIN:ZDB-PUB-990210-18] synonym: "fin membrane pectoral fin bud" RELATED [] xref: TAO:0005316 xref: ZFIN:ZDB-ANAT-100408-31 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0005421 ! anterior limb/fin apical ectodermal ridge relationship: part_of UBERON:0005419 ! forelimb/pectoral fin bud [Term] id: ZFA:0005317 name: pectoral fin fold (zebrafish) namespace: zebrafish_anatomy def: "The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds." [ZFIN:ZDB-PUB-990210-18] xref: TAO:0005317 xref: ZFIN:ZDB-ANAT-100408-32 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from ZFA:0005316 ! fin fold pectoral fin bud (zebrafish) relationship: part_of UBERON:0000151 ! pectoral fin [Term] id: ZFA:0005319 name: intersegmental lymph vessel (zebrafish) namespace: zebrafish_anatomy def: "Lymph vessel that is located between the somites." [ZFIN:curator] synonym: "islv" EXACT [] xref: TAO:0005319 xref: ZFIN:ZDB-ANAT-100408-34 is_a: UBERON:0004536 ! lymph vasculature [Term] id: ZFA:0005320 name: dorsal longitudinal lymphatic vessel (zebrafish) namespace: zebrafish_anatomy synonym: "dllv" EXACT [] xref: TAO:0005320 xref: ZFIN:ZDB-ANAT-100408-35 is_a: UBERON:0004536 ! lymph vasculature [Term] id: ZFA:0005321 name: vascular smooth muscle (zebrafish) namespace: zebrafish_anatomy def: "Smooth muscle that is part of the blood vessel wall." [ZFIN:ZDB-PUB-060216-3] xref: TAO:0005321 xref: ZFIN:ZDB-ANAT-100408-36 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0001981 ! blood vessel [Term] id: ZFA:0005324 name: gill ionocyte (zebrafish) namespace: zebrafish_anatomy def: "Ionocyte located in the gills." [ZFIN:curator] subset: cell_slim ! cell_slim xref: TAO:0005324 xref: ZFIN:ZDB-ANAT-100408-39 is_a: CL:0005006 ! ionocyte relationship: part_of UBERON:0002535 ! gill [Term] id: ZFA:0005325 name: integument ionocyte (zebrafish) namespace: zebrafish_anatomy def: "Ionocyte located in the integument during embryonic and larval stages." [ZFIN:curator] subset: cell_slim ! cell_slim synonym: "extrabranchial ionocyte" RELATED [] synonym: "skin ionocyte" EXACT [] xref: TAO:0005325 xref: ZFIN:ZDB-ANAT-100408-40 is_a: CL:0005006 ! ionocyte relationship: part_of UBERON:0002199 ! integument [Term] id: ZFA:0005326 name: NaK ionocyte (zebrafish) namespace: zebrafish_anatomy def: "Integument ionocyte rich in Na,K-ATPase." [ZFIN:curator] subset: cell_slim ! cell_slim synonym: "NaK-MRC" RELATED [] synonym: "NaR cell" RELATED [] xref: TAO:0005326 xref: ZFIN:ZDB-ANAT-100408-41 is_a: ZFA:0005325 ! integument ionocyte (zebrafish) relationship: part_of UBERON:0002199 ! integument [Term] id: ZFA:0005327 name: vH ionocyte (zebrafish) namespace: zebrafish_anatomy def: "Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase" [ZFIN:curator] subset: cell_slim ! cell_slim synonym: "HR cell" RELATED [] synonym: "VH-MRC" RELATED [] xref: TAO:0005327 xref: ZFIN:ZDB-ANAT-100408-42 is_a: ZFA:0005325 ! integument ionocyte (zebrafish) relationship: part_of UBERON:0002199 ! integument [Term] id: ZFA:0005336 name: presumptive swim bladder (zebrafish) namespace: zebrafish_anatomy def: "Portion of the gut endoderm that will eventually develop into the swim bladder." [ZFIN:ZDB-PUB-090511-18] synonym: "swim bladder anlage" RELATED [ZFIN:ZDB-PUB-100202-11] xref: TAO:0005336 xref: ZFIN:ZDB-ANAT-100408-50 is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: ZFA:0005337 name: anterior swim bladder bud (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder." [ZFIN:ZDB-PUB-090511-18] xref: TAO:0002145 xref: ZFIN:ZDB-ANAT-100408-51 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0006860 ! swim bladder [Term] id: ZFA:0005338 name: posterior recess (zebrafish) namespace: zebrafish_anatomy def: "Posterior protrusion of the third ventricle." [ZFIN:curator] synonym: "posterior recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] xref: TAO:0005338 xref: ZFIN:ZDB-ANAT-100408-52 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002286 ! third ventricle [Term] id: ZFA:0005339 name: nucleus of the lateral recess (zebrafish) namespace: zebrafish_anatomy def: "Is a diencephalic nucleus located in the caudal periventricular hypothalamus surrounding the lateral recess of the third ventricle." [ZFIN:ZDB-PUB-091221-27] xref: TAO:0005339 xref: ZFIN:ZDB-ANAT-100408-53 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000324 ! caudal periventricular hypothalamus (zebrafish) [Term] id: ZFA:0005340 name: nucleus of the posterior recess (zebrafish) namespace: zebrafish_anatomy def: "A diencephalic nucleus that is part of caudal periventricular hypothalmus surrounding the posterior recess of the third ventricle." [ZFIN:ZDB-PUB-091221-27] xref: TAO:0005340 xref: ZFIN:ZDB-ANAT-100408-54 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of ZFA:0000324 ! caudal periventricular hypothalamus (zebrafish) [Term] id: ZFA:0005341 name: medial longitudinal catecholaminergic tract (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter tract, major catecholaminergic tract that originates in the diencephalon, passes the locus coeruleus and projects through the hindbrain into the spinal cord. Dopaminergic neurons of the posterior tuberculum and lateral hypothalamus provide the predominant contribution to descending mlct projections." [ZFIN:ZDB-PUB-091221-28] synonym: "medial longitudinal CA tract" EXACT [ZFIN:ZDB-PUB-091221-28] synonym: "mlct" EXACT [] xref: TAO:0005341 xref: ZFIN:ZDB-ANAT-100408-55 is_a: UBERON:0002316 ! white matter [Term] id: ZFA:0005342 name: anterior catecholaminergic tract (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract." [ZFIN:ZDB-PUB-091221-28] xref: TAO:0002144 xref: ZFIN:ZDB-ANAT-100408-56 is_a: UBERON:0002316 ! white matter [Term] id: ZFA:0005343 name: endohypothalamic tract (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus." [ZFIN:ZDB-PUB-091221-28] xref: TAO:0005343 xref: ZFIN:ZDB-ANAT-100408-57 is_a: UBERON:0002316 ! white matter [Term] id: ZFA:0005344 name: preopticohypothalamic tract (zebrafish) namespace: zebrafish_anatomy def: "CNS white matter, axonal tract between the preoptic region and ventral diencephalon." [ZFIN:ZDB-PUB-091221-28] xref: TAO:0005344 xref: ZFIN:ZDB-ANAT-100408-58 is_a: UBERON:0002316 ! white matter [Term] id: ZFA:0005346 name: extrapancreatic duct (zebrafish) namespace: zebrafish_anatomy def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] xref: TAO:0005346 xref: ZFIN:ZDB-ANAT-100408-60 is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0007329 ! pancreatic duct [Term] id: ZFA:0005347 name: vertebra 5 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 4." [ZFIN:curator] xref: TAO:0001732 xref: ZFIN:ZDB-ANAT-100614-1 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005348 name: vertebra 6 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 5." [ZFIN:curator] xref: TAO:0001980 xref: ZFIN:ZDB-ANAT-100614-2 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005349 name: vertebra 7 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 6." [ZFIN:curator] xref: TAO:0001981 xref: ZFIN:ZDB-ANAT-100614-3 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005350 name: vertebra 8 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 7." [ZFIN:curator] xref: TAO:0001982 xref: ZFIN:ZDB-ANAT-100614-4 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005351 name: vertebra 9 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 8." [ZFIN:curator] xref: TAO:0002149 xref: ZFIN:ZDB-ANAT-100614-5 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005352 name: vertebra 12 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib." [ZFIN:ZDB-PUB-020807-1] xref: TAO:0002152 xref: ZFIN:ZDB-ANAT-100614-6 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005353 name: vertebra 10 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 9." [ZFIN:curator] xref: TAO:0002150 xref: ZFIN:ZDB-ANAT-100614-7 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005354 name: vertebra 11 (zebrafish) namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 10." [ZFIN:curator] xref: TAO:0002151 xref: ZFIN:ZDB-ANAT-100614-8 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra (zebrafish) [Term] id: ZFA:0005355 name: dorsal fin lepidotrichium 1 (zebrafish) namespace: zebrafish_anatomy def: "First lepidotrichium of dorsal fin." [ZFIN:curator] xref: TAO:0001754 xref: ZFIN:ZDB-ANAT-100614-9 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005356 name: dorsal fin lepidotrichium 2 (zebrafish) namespace: zebrafish_anatomy def: "Second lepidotrichium of dorsal fin." [ZFIN:curator] xref: TAO:0001755 xref: ZFIN:ZDB-ANAT-100614-10 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005357 name: dorsal fin lepidotrichium 3 (zebrafish) namespace: zebrafish_anatomy def: "Third lepidotrichium of dorsal fin." [ZFIN:curator] xref: TAO:0001756 xref: ZFIN:ZDB-ANAT-100614-11 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005358 name: dorsal fin lepidotrichium 4 (zebrafish) namespace: zebrafish_anatomy def: "Fourth lepidotrichium of dorsal fin." [ZFIN:curator] xref: TAO:0001757 xref: ZFIN:ZDB-ANAT-100614-12 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005359 name: dorsal fin lepidotrichium 5 (zebrafish) namespace: zebrafish_anatomy def: "Fifth lepidotrichium of dorsal fin." [ZFIN:curator] xref: TAO:0001758 xref: ZFIN:ZDB-ANAT-100614-13 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005360 name: dorsal fin lepidotrichium 6 (zebrafish) namespace: zebrafish_anatomy def: "Sixth lepidotrichium of dorsal fin." [ZFIN:curator] xref: TAO:0001759 xref: ZFIN:ZDB-ANAT-100614-14 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005361 name: dorsal fin lepidotrichium 7 (zebrafish) namespace: zebrafish_anatomy def: "Seventh lepidotrichium of dorsal fin." [ZFIN:curator] xref: TAO:0001760 xref: ZFIN:ZDB-ANAT-100614-15 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005362 name: dorsal fin proximal radial 1 (zebrafish) namespace: zebrafish_anatomy def: "First proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0001818 xref: ZFIN:ZDB-ANAT-100614-16 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005364 ! dorsal fin pterygiophore 1 (zebrafish) [Term] id: ZFA:0005363 name: dorsal fin proximal radial 2 (zebrafish) namespace: zebrafish_anatomy def: "Second proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0001819 xref: ZFIN:ZDB-ANAT-100614-17 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005365 ! dorsal fin pterygiophore 2 (zebrafish) [Term] id: ZFA:0005364 name: dorsal fin pterygiophore 1 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is the rostralmost pterygiophore of the dorsal fin." [TAO:curator] xref: TAO:0002094 xref: ZFIN:ZDB-ANAT-100614-18 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005365 name: dorsal fin pterygiophore 2 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 1 of the dorsal fin." [ZFIN:curator] xref: TAO:0005365 xref: ZFIN:ZDB-ANAT-100614-19 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005366 name: dorsal fin pterygiophore 3 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 2 of the dorsal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0005366 xref: ZFIN:ZDB-ANAT-100614-20 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005367 name: dorsal fin pterygiophore 4 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 3 of the dorsal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0005367 xref: ZFIN:ZDB-ANAT-100614-21 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005368 name: dorsal fin pterygiophore 5 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 4 of the dorsal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0005368 xref: ZFIN:ZDB-ANAT-100614-22 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005369 name: dorsal fin pterygiophore 6 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 5 of the dorsal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0005369 xref: ZFIN:ZDB-ANAT-100614-23 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005370 name: dorsal fin pterygiophore 7 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 6 of the dorsal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0005370 xref: ZFIN:ZDB-ANAT-100614-24 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005371 name: dorsal fin pterygiophore 8 (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 7 of the dorsal fin. The most caudal pterygiophore of the dorsal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0005371 xref: ZFIN:ZDB-ANAT-100614-25 is_a: ZFA:0001419 ! dorsal fin pterygiophore (zebrafish) [Term] id: ZFA:0005372 name: dorsal fin distal radial 1 (zebrafish) namespace: zebrafish_anatomy def: "First distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005372 xref: ZFIN:ZDB-ANAT-100614-26 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005364 ! dorsal fin pterygiophore 1 (zebrafish) [Term] id: ZFA:0005373 name: dorsal fin distal radial 2 (zebrafish) namespace: zebrafish_anatomy def: "Second distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005373 xref: ZFIN:ZDB-ANAT-100614-27 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005365 ! dorsal fin pterygiophore 2 (zebrafish) [Term] id: ZFA:0005374 name: dorsal fin distal radial 3 (zebrafish) namespace: zebrafish_anatomy def: "Third distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005374 xref: ZFIN:ZDB-ANAT-100614-28 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005366 ! dorsal fin pterygiophore 3 (zebrafish) [Term] id: ZFA:0005375 name: dorsal fin distal radial 4 (zebrafish) namespace: zebrafish_anatomy def: "Fourth distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005375 xref: ZFIN:ZDB-ANAT-100614-29 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005367 ! dorsal fin pterygiophore 4 (zebrafish) [Term] id: ZFA:0005376 name: dorsal fin distal radial 5 (zebrafish) namespace: zebrafish_anatomy def: "Fifth distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005376 xref: ZFIN:ZDB-ANAT-100614-30 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005368 ! dorsal fin pterygiophore 5 (zebrafish) [Term] id: ZFA:0005377 name: dorsal fin distal radial 6 (zebrafish) namespace: zebrafish_anatomy def: "Sixth distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005377 xref: ZFIN:ZDB-ANAT-100614-31 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005369 ! dorsal fin pterygiophore 6 (zebrafish) [Term] id: ZFA:0005378 name: dorsal fin distal radial 7 (zebrafish) namespace: zebrafish_anatomy def: "Seventh distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005378 xref: ZFIN:ZDB-ANAT-100614-32 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005370 ! dorsal fin pterygiophore 7 (zebrafish) [Term] id: ZFA:0005379 name: dorsal fin distal radial 8 (zebrafish) namespace: zebrafish_anatomy def: "Eighth distal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005379 xref: ZFIN:ZDB-ANAT-100614-33 is_a: ZFA:0000936 ! dorsal fin distal radial (zebrafish) relationship: part_of ZFA:0005371 ! dorsal fin pterygiophore 8 (zebrafish) [Term] id: ZFA:0005380 name: dorsal fin proximal radial 3 (zebrafish) namespace: zebrafish_anatomy def: "Third proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005380 xref: ZFIN:ZDB-ANAT-100614-34 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005366 ! dorsal fin pterygiophore 3 (zebrafish) [Term] id: ZFA:0005381 name: dorsal fin proximal radial 4 (zebrafish) namespace: zebrafish_anatomy def: "Fourth proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005381 xref: ZFIN:ZDB-ANAT-100614-35 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005367 ! dorsal fin pterygiophore 4 (zebrafish) [Term] id: ZFA:0005382 name: dorsal fin proximal radial 5 (zebrafish) namespace: zebrafish_anatomy def: "Fifth proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005382 xref: ZFIN:ZDB-ANAT-100614-36 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005368 ! dorsal fin pterygiophore 5 (zebrafish) [Term] id: ZFA:0005383 name: dorsal fin proximal radial 6 (zebrafish) namespace: zebrafish_anatomy def: "Sixth proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005383 xref: ZFIN:ZDB-ANAT-100614-37 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005369 ! dorsal fin pterygiophore 6 (zebrafish) [Term] id: ZFA:0005384 name: dorsal fin proximal radial 7 (zebrafish) namespace: zebrafish_anatomy def: "Seventh proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005384 xref: ZFIN:ZDB-ANAT-100614-38 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005370 ! dorsal fin pterygiophore 7 (zebrafish) [Term] id: ZFA:0005385 name: dorsal fin proximal radial 8 (zebrafish) namespace: zebrafish_anatomy def: "Eighth proximal radial of the dorsal fin." [ZFIN:curator] xref: TAO:0005385 xref: ZFIN:ZDB-ANAT-100614-39 is_a: ZFA:0000947 ! dorsal fin proximal radial (zebrafish) relationship: part_of ZFA:0005371 ! dorsal fin pterygiophore 8 (zebrafish) [Term] id: ZFA:0005389 name: gill opening (zebrafish) namespace: zebrafish_anatomy def: "Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head." [TAO:curator] xref: TAO:0002057 xref: ZFIN:ZDB-ANAT-100614-43 is_a: UBERON:0000464 ! anatomical space [Term] id: ZFA:0005390 name: gill ray (zebrafish) namespace: zebrafish_anatomy def: "Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage." [TAO:curator] xref: TAO:0001856 xref: ZFIN:ZDB-ANAT-100614-44 is_a: ZFA:0001460 ! pharyngeal arch cartilage (zebrafish) relationship: part_of UBERON:0008896 ! pharyngeal arch 3-7 [Term] id: ZFA:0005391 name: head sensory canal system (zebrafish) namespace: zebrafish_anatomy def: "Lateral line system on head and pectoral girdle." [TAO:curator] xref: TAO:0001873 xref: ZFIN:ZDB-ANAT-100614-45 is_a: ZFA:0001468 ! anterior lateral line system (zebrafish) [Term] id: ZFA:0005392 name: infraorbital sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal associated with the infraorbital bones. Located in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired. The canal has 3 pores. The first opens dorsally below the nasal sac, the second opens laterally posterior to the anterior maxilary barbel, the third pore is present where infraorbital 1 meets infraorbital 2." [ZFIN:ZDB-PUB-961014-192] xref: TAO:0001811 xref: ZFIN:ZDB-ANAT-100614-46 is_a: ZFA:0005443 ! sensory canal (zebrafish) relationship: part_of ZFA:0005391 ! head sensory canal system (zebrafish) [Term] id: ZFA:0005393 name: otic sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired." [TAO:curator] xref: TAO:0001629 xref: ZFIN:ZDB-ANAT-100614-47 is_a: ZFA:0005443 ! sensory canal (zebrafish) relationship: part_of ZFA:0005391 ! head sensory canal system (zebrafish) [Term] id: ZFA:0005394 name: post-otic sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal that forms dorsal to the horizontal semicircular canal of the ear. The anterior end of the canal may span or remain posterior to the pterotic-sphenotic junction. The posterior end of the postotic canal meets the temporal and supratemporal canals. The canal lies between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired and when mature is fully enclosed in bone." [TAO:curator, ZFIN:ZDB-PUB-961014-192] synonym: "postotic sensory canal" EXACT [ZFIN:ZDB-PUB-961014-192] xref: TAO:0001619 xref: ZFIN:ZDB-ANAT-100614-48 is_a: ZFA:0005443 ! sensory canal (zebrafish) relationship: part_of ZFA:0005391 ! head sensory canal system (zebrafish) [Term] id: ZFA:0005395 name: preoperculo-mandibular sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones." [TAO:curator] xref: TAO:0001812 xref: ZFIN:ZDB-ANAT-100614-49 is_a: ZFA:0005443 ! sensory canal (zebrafish) relationship: part_of ZFA:0005391 ! head sensory canal system (zebrafish) [Term] id: ZFA:0005396 name: supraorbital sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal contained in the nasal and frontal bones. It contains 4 or 5 neuromast. The first neuromast is positioned in the tubular nasal bone and the other neuromasts are located in the frontal bone. The canal is anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired." [TAO:curator, ZFIN:ZDB-PUB-031103-11] xref: TAO:0001810 xref: ZFIN:ZDB-ANAT-100614-50 is_a: ZFA:0005443 ! sensory canal (zebrafish) relationship: part_of ZFA:0005391 ! head sensory canal system (zebrafish) [Term] id: ZFA:0005397 name: hyoideomandibular nerve (zebrafish) namespace: zebrafish_anatomy def: "Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2." [TAO:curator] xref: TAO:0002010 xref: ZFIN:ZDB-ANAT-100614-51 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001647 ! facial nerve [Term] id: ZFA:0005398 name: anal fin actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Actinotrichium that is part of the anal fin skeleton." [TAO:curator] synonym: "anal fin actinotricia" EXACT PLURAL [] xref: TAO:0000375 xref: ZFIN:ZDB-ANAT-100614-52 is_a: ZFA:0005435 ! actinotrichium (zebrafish) relationship: part_of ZFA:0001162 ! anal fin (zebrafish) [Term] id: ZFA:0005399 name: anal fin lepidotrichium 1 (zebrafish) namespace: zebrafish_anatomy def: "First lepidotrichium of anal fin." [ZFIN:curator] xref: TAO:0001769 xref: ZFIN:ZDB-ANAT-100614-53 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005400 name: anal fin lepidotrichium 2 (zebrafish) namespace: zebrafish_anatomy def: "Second lepidotrichium of anal fin." [ZFIN:curator] xref: TAO:0001770 xref: ZFIN:ZDB-ANAT-100614-54 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005401 name: anal fin lepidotrichium 3 (zebrafish) namespace: zebrafish_anatomy def: "Third epidotrichium of anal fin." [ZFIN:curator] xref: TAO:0001771 xref: ZFIN:ZDB-ANAT-100614-55 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005402 name: anal fin lepidotrichium 4 (zebrafish) namespace: zebrafish_anatomy def: "Fourth lepidotrichium of anal fin." [ZFIN:curator] xref: TAO:0001772 xref: ZFIN:ZDB-ANAT-100614-56 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005403 name: anal fin lepidotrichium 5 (zebrafish) namespace: zebrafish_anatomy def: "Fifth lepidotrichium of anal fin." [ZFIN:curator] xref: TAO:0001773 xref: ZFIN:ZDB-ANAT-100614-57 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005404 name: anal fin lepidotrichium 6 (zebrafish) namespace: zebrafish_anatomy def: "Sixth lepidotrichium of anal fin." [ZFIN:curator] xref: TAO:0001774 xref: ZFIN:ZDB-ANAT-100614-58 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005405 name: anal fin lepidotrichium 7 (zebrafish) namespace: zebrafish_anatomy def: "Seventh lepidotrichium of anal fin." [ZFIN:curator] xref: TAO:0001775 xref: ZFIN:ZDB-ANAT-100614-59 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005406 name: anterior myodome (zebrafish) namespace: zebrafish_anatomy def: "Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature." [TAO:curator] comment: Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-100614-560 correct Dbxref ZDB-ANAT-100614-60. xref: TAO:0001927 xref: ZFIN:ZDB-ANAT-100614-60 is_a: UBERON:0004704 ! bone fossa [Term] id: ZFA:0005407 name: anterior nasal barbel (zebrafish) namespace: zebrafish_anatomy def: "Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired." [TAO:curator] xref: TAO:0001937 xref: ZFIN:ZDB-ANAT-100614-61 is_a: ZFA:0000622 ! barbel (zebrafish) [Term] id: ZFA:0005408 name: maxillary barbel (zebrafish) namespace: zebrafish_anatomy def: "Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired." [TAO:curator] xref: TAO:0001938 xref: ZFIN:ZDB-ANAT-100614-62 is_a: ZFA:0000622 ! barbel (zebrafish) [Term] id: ZFA:0005409 name: pars superior ear (zebrafish) namespace: zebrafish_anatomy def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] xref: TAO:0005409 xref: ZFIN:ZDB-ANAT-100614-63 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear [Term] id: ZFA:0005410 name: pars inferior ear (zebrafish) namespace: zebrafish_anatomy def: "The ventral portion of the ear. It contains the saccule and the lagena which are the primary auditory organs." [ZFIN:curator] xref: TAO:0005410 xref: ZFIN:ZDB-ANAT-100614-64 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear [Term] id: ZFA:0005411 name: common crus (zebrafish) namespace: zebrafish_anatomy def: "Duct that forms when the nonampullary ends of the posterior and anterior semicircular canals merge. The common curs descends connecting the semicircular canals to the horizontal canal." [ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4] xref: TAO:0005411 xref: ZFIN:ZDB-ANAT-100614-65 is_a: UBERON:0000058 ! duct relationship: part_of ZFA:0005409 ! pars superior ear (zebrafish) [Term] id: ZFA:0005412 name: transverse canal (zebrafish) namespace: zebrafish_anatomy def: "Duct that crosses the midline connecting the sacculi." [ZFIN:curator] xref: TAO:0005412 xref: ZFIN:ZDB-ANAT-100614-66 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002105 ! vestibulo-auditory system [Term] id: ZFA:0005415 name: inner ear foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen in the inner ear." [ZFIN:curator] xref: TAO:0005415 xref: ZFIN:ZDB-ANAT-100614-69 is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0001846 ! internal ear [Term] id: ZFA:0005416 name: sacculoagenar foramen (zebrafish) namespace: zebrafish_anatomy def: "Inner ear foramen that connects the lagena to the caudal half of the saccule." [ZFIN:ZDB-PUB-020403-4] xref: TAO:0005416 xref: ZFIN:ZDB-ANAT-100614-70 is_a: ZFA:0005415 ! inner ear foramen (zebrafish) [Term] id: ZFA:0005417 name: utriculosaccular foramen (zebrafish) namespace: zebrafish_anatomy def: "Inner ear foramen that connects the rostral saccula to the utricle." [ZFIN:ZDB-PUB-020403-4] xref: ZFIN:ZDB-ANAT-100614-71 is_a: ZFA:0005415 ! inner ear foramen (zebrafish) [Term] id: ZFA:0005418 name: auditory fenestra (zebrafish) namespace: zebrafish_anatomy def: "Opening in the neurocranium to allow communication between the swim bladder and the inner ear." [TAO:curator] xref: TAO:0002066 xref: ZFIN:ZDB-ANAT-100614-72 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005419 name: auditory foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen through which cranial nerve VIII (auditory) exits." [TAO:curator] xref: TAO:0001742 xref: ZFIN:ZDB-ANAT-100614-73 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005420 name: autopalatine-lateral ethmoid joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired." [TAO:curator] xref: TAO:0001608 xref: ZFIN:ZDB-ANAT-100614-74 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005421 name: autopalatine-maxillary joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the autopalatine cartilage or bone and maxilla." [TAO:curator] xref: TAO:0001942 xref: ZFIN:ZDB-ANAT-100614-75 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005422 name: autopalatine-vomer joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates autopalatine and vomer bones. Autopalatine vomer joint is paired." [TAO:curator] xref: TAO:0001784 xref: ZFIN:ZDB-ANAT-100614-76 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005423 name: basioccipital-exoccipital joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the basioccipital and exoccipital. Basioccipital exoccipital joint is paired." [TAO:curator] xref: TAO:0002038 xref: ZFIN:ZDB-ANAT-100614-77 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005424 name: caudal fin actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Actinotrichium that is part of the caudal fin skeleton." [TAO:curator] synonym: "caudal fin actinotrichia" EXACT PLURAL [] xref: TAO:0000437 xref: ZFIN:ZDB-ANAT-100614-78 is_a: ZFA:0005435 ! actinotrichium (zebrafish) relationship: part_of ZFA:0001058 ! caudal fin (zebrafish) [Term] id: ZFA:0005426 name: coracoid foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen that is located in the coracoid." [TAO:curator] xref: TAO:0001737 xref: ZFIN:ZDB-ANAT-100614-80 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005427 name: dentary foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:curator] xref: TAO:0002012 xref: ZFIN:ZDB-ANAT-100614-81 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005429 name: olfactory nerve foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen for the passage of the olfactory nerve or cranial nerve 1." [TAO:curator] xref: TAO:0001804 xref: ZFIN:ZDB-ANAT-100614-83 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005430 name: orbital foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal)." [TAO:curator] xref: TAO:0002031 xref: ZFIN:ZDB-ANAT-100614-84 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005431 name: scapular foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone." [TAO:curator] xref: TAO:0001735 xref: ZFIN:ZDB-ANAT-100614-85 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005432 name: superficial ophthalmic nerve foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen through which the superficial ophthalmic nerve passes." [TAO:curator] xref: TAO:0001748 xref: ZFIN:ZDB-ANAT-100614-86 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005433 name: mental barbel (zebrafish) namespace: zebrafish_anatomy def: "Barbel that originates on the chin." [TAO:curator] xref: TAO:0002024 xref: ZFIN:ZDB-ANAT-100614-87 is_a: ZFA:0000622 ! barbel (zebrafish) [Term] id: ZFA:0005435 name: actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue which is a slender, horny, flexible, unsegmented fibril which provide structural support to fin folds or fins. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine." [ZFIN:curator] synonym: "actinotrichia" EXACT PLURAL [] xref: TAO:0000089 xref: ZFIN:ZDB-ANAT-100614-89 is_a: UBERON:0000479 ! tissue [Term] id: ZFA:0005436 name: pectoral fin nerve (zebrafish) namespace: zebrafish_anatomy def: "Nerve that is part of the pectoral fin." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-100805-1 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000151 ! pectoral fin [Term] id: ZFA:0005437 name: pectoral fin motor nerve (zebrafish) namespace: zebrafish_anatomy def: "Motor nerve that is located in the pectoral fin." [ZFIN:ZDB-PUB-070726-9] xref: ZFIN:ZDB-ANAT-100805-2 is_a: ZFA:0005436 ! pectoral fin nerve (zebrafish) [Term] id: ZFA:0005438 name: pectoral fin sensory nerve (zebrafish) namespace: zebrafish_anatomy def: "Sensory nerve that innervates the pectoral fin." [ZFIN:ZDB-PUB-070726-9] xref: ZFIN:ZDB-ANAT-100805-3 is_a: ZFA:0005436 ! pectoral fin nerve (zebrafish) [Term] id: ZFA:0005439 name: pectoral fin motor nerve 1 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the dorsal side of the fin rostral of all other motor nerves and innervates the dorsal side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] xref: ZFIN:ZDB-ANAT-100805-4 is_a: ZFA:0005437 ! pectoral fin motor nerve (zebrafish) [Term] id: ZFA:0005440 name: pectoral fin motor nerve 2 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and rostral of all other motor nerves and innervates the dorsal side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] xref: ZFIN:ZDB-ANAT-100805-5 is_a: ZFA:0005437 ! pectoral fin motor nerve (zebrafish) [Term] id: ZFA:0005441 name: pectoral fin motor nerve 3 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and 2 and rostral of nerve 4 and innervates the dorsal side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] xref: ZFIN:ZDB-ANAT-100805-6 is_a: ZFA:0005437 ! pectoral fin motor nerve (zebrafish) [Term] id: ZFA:0005442 name: articular fossa of opercle (zebrafish) namespace: zebrafish_anatomy def: "Fossa of opercle that articulates with hyomandibular condyle for opercle." [TAO:curator] xref: TAO:0001928 xref: ZFIN:ZDB-ANAT-100805-7 is_a: UBERON:0004704 ! bone fossa [Term] id: ZFA:0005443 name: sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromasts." [TAO:curator] xref: TAO:0001612 xref: ZFIN:ZDB-ANAT-100805-8 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: ZFA:0005444 name: trunk sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to the caudal fin. The trunk sensory canal is bilaterally paired." [TAO:curator] xref: TAO:0001617 xref: ZFIN:ZDB-ANAT-100805-9 is_a: ZFA:0005443 ! sensory canal (zebrafish) [Term] id: ZFA:0005445 name: supratemporal sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired." [TAO:curator] xref: TAO:0001630 xref: ZFIN:ZDB-ANAT-100805-10 is_a: ZFA:0005443 ! sensory canal (zebrafish) [Term] id: ZFA:0005446 name: neuromast foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen in a bone that is part of a sensory canal." [ZFIN:ZDB-PUB-961014-192] xref: ZFIN:ZDB-ANAT-100805-11 is_a: UBERON:0005744 ! cranial conduit relationship: part_of ZFA:0005443 ! sensory canal (zebrafish) [Term] id: ZFA:0005447 name: sensory canal tubule (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so." [TAO:curator] xref: TAO:0001933 xref: ZFIN:ZDB-ANAT-100805-12 is_a: ZFA:0005443 ! sensory canal (zebrafish) [Term] id: ZFA:0005448 name: preopercular sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal associated with the preopercle bone. It lies in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired." [ZFIN:curator] xref: TAO:0001813 xref: ZFIN:ZDB-ANAT-100805-13 is_a: ZFA:0005443 ! sensory canal (zebrafish) relationship: part_of ZFA:0005395 ! preoperculo-mandibular sensory canal (zebrafish) [Term] id: ZFA:0005450 name: pectoral fin motor nerve 4 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the ventral side of the fin and innervates the ventral side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] xref: ZFIN:ZDB-ANAT-100805-15 is_a: ZFA:0005437 ! pectoral fin motor nerve (zebrafish) [Term] id: ZFA:0005451 name: mandibular sensory canal (zebrafish) namespace: zebrafish_anatomy def: "Sensory canal associated with the angular and dentary bones. Located anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and does not meet at the mandibular symphysis. The mandibular lateral line canal has 3 neuromast located between the canal pores. Two neuromast are located in the portion of the can in the dentary bone. The third neuromast is located in the anguloarticular bone. The rostral end of the canal has a terminal pore adjacent to the mandibular symphysis. There are three more pores, two, at the posterior of the dentary and the anterior of the anguloarticular share a common epithelial pore." [TAO:curator, ZFIN:ZDB-PUB-031103-11] xref: TAO:0001814 xref: ZFIN:ZDB-ANAT-100805-16 is_a: ZFA:0005443 ! sensory canal (zebrafish) relationship: part_of ZFA:0005395 ! preoperculo-mandibular sensory canal (zebrafish) [Term] id: ZFA:0005452 name: tract of the caudal commissure (zebrafish) namespace: zebrafish_anatomy synonym: "tract of the posterior commissure" EXACT [ZFIN:ZDB-PUB-961014-421] xref: ZFIN:ZDB-ANAT-100805-17 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0000936 ! posterior commissure [Term] id: ZFA:0005453 name: basicapsular fenestra (zebrafish) namespace: zebrafish_anatomy def: "Opening in the prootic." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-100805-18 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005454 name: subtemporal fossa (zebrafish) namespace: zebrafish_anatomy def: "Fossa where the anteromedial rim is formed by the prootic, the remainder of the fossa is formed by the exoccipital and pterotic." [ZFIN:ZDB-PUB-961014-192] xref: TAO:0001974 xref: ZFIN:ZDB-ANAT-100805-19 is_a: UBERON:0004704 ! bone fossa [Term] id: ZFA:0005455 name: prootic foramen (zebrafish) namespace: zebrafish_anatomy def: "Foramen formed between the anterolateral extension of the prootic that contacts the pterosphenoid the prootic and the pterosphenoid." [ZFIN:ZDB-PUB-961014-192] synonym: "anterior trigemino-facialis foramen of Howes" EXACT [] synonym: "trigeminal notch of Harrington" EXACT [] xref: ZFIN:ZDB-ANAT-100805-20 is_a: UBERON:0005744 ! cranial conduit [Term] id: ZFA:0005456 name: sinus impar (zebrafish) namespace: zebrafish_anatomy def: "Perilymphatic compartment of the zebrafish ear. Chamber positioned ventral of the medulla, the anterior end surrounds the posterior portion of the transverse canal." [ZFIN:ZDB-PUB-010912-7] xref: ZFIN:ZDB-ANAT-100805-21 is_a: UBERON:0002278 ! perilymphatic space [Term] id: ZFA:0005457 name: dorsal hypohyal-urohyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired." [TAO:curator] xref: TAO:0001847 xref: ZFIN:ZDB-ANAT-100805-22 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005458 name: dorsal hypohyal-ventral hypohyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired." [TAO:curator] xref: TAO:0001845 xref: ZFIN:ZDB-ANAT-100805-23 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005460 name: atrium of sinus impar (zebrafish) namespace: zebrafish_anatomy def: "Bilaterally paired perilymphatic chambers posterior to the sinus impar. These connect to the anterior end of the otic duct." [ZFIN:ZDB-PUB-010912-7] xref: ZFIN:ZDB-ANAT-100805-25 is_a: UBERON:0002278 ! perilymphatic space [Term] id: ZFA:0005461 name: perilymphatic duct (zebrafish) namespace: zebrafish_anatomy def: "Duct that contains perilymph." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-100805-26 is_a: UBERON:0000058 ! duct [Term] id: ZFA:0005462 name: otic duct (zebrafish) namespace: zebrafish_anatomy def: "Pair of perilymphatic ducts that extend from the dorsal ends of the atria of the sinus impar, pass on either side of the medulla and merge and extend dorsally toward the surface of the head." [ZFIN:ZDB-PUB-010912-7] xref: ZFIN:ZDB-ANAT-100805-27 is_a: ZFA:0005461 ! perilymphatic duct (zebrafish) [Term] id: ZFA:0005463 name: oral ectoderm (zebrafish) namespace: zebrafish_anatomy def: "Ectoderm of the oral region." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-100805-28 is_a: UBERON:0000924 ! ectoderm relationship: part_of UBERON:0000166 ! oral opening [Term] id: ZFA:0005464 name: dentary-anguloarticular joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired." [TAO:curator] xref: TAO:0001749 xref: ZFIN:ZDB-ANAT-100805-29 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005465 name: ceratohyal-branchiostegal ray joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired." [TAO:curator] xref: TAO:0001850 xref: ZFIN:ZDB-ANAT-100805-30 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005466 name: ceratohyal-ventral hypohyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired." [TAO:curator] xref: TAO:0001844 xref: ZFIN:ZDB-ANAT-100805-31 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005467 name: ceratohyal-dorsal hypohyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired." [TAO:curator] xref: TAO:0001843 xref: ZFIN:ZDB-ANAT-100805-32 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005468 name: frontal-pterotic joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired." [TAO:curator] xref: TAO:0001711 xref: ZFIN:ZDB-ANAT-100805-33 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005469 name: hyomandibula-metapterygoid joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the hyomandibula bone and metapterygoid bone." [TAO:curator] xref: TAO:0001979 xref: ZFIN:ZDB-ANAT-100805-34 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005470 name: inter-coracoid joint (zebrafish) namespace: zebrafish_anatomy def: "Joint between the right and left coracoid bones of the pectoral girdle." [TAO:curator] xref: TAO:0002040 xref: ZFIN:ZDB-ANAT-100805-35 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005471 name: inter-basipterygium joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired." [TAO:curator] xref: TAO:0001939 xref: ZFIN:ZDB-ANAT-100805-36 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005472 name: inter-frontal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint between the left and right frontal bone." [TAO:curator] xref: TAO:0001922 xref: ZFIN:ZDB-ANAT-100805-37 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005473 name: interhyal-epihyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired." [TAO:curator] xref: TAO:0001841 xref: ZFIN:ZDB-ANAT-100805-38 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005474 name: inter-hypobranchial 3 joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired." [TAO:curator] xref: TAO:0001863 xref: ZFIN:ZDB-ANAT-100805-39 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005475 name: inter-premaxillary joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired." [TAO:curator] xref: TAO:0001950 xref: ZFIN:ZDB-ANAT-100805-40 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005476 name: inter-ventral hypohyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired." [TAO:curator] xref: TAO:0001846 xref: ZFIN:ZDB-ANAT-100805-41 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005477 name: lateral ethmoid-frontal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the lateral ethmoid and frontal. Lateral ethmoid-frontal joint is paired." [TAO:curator] xref: TAO:0002032 xref: ZFIN:ZDB-ANAT-100805-42 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005478 name: opercle-interopercle joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired." [TAO:curator] xref: TAO:0001710 xref: ZFIN:ZDB-ANAT-100805-43 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005479 name: orbitosphenoid-lateral ethmoid joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired." [TAO:curator] xref: TAO:0001941 xref: ZFIN:ZDB-ANAT-100805-44 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005480 name: orbitosphenoid-prootic joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired." [TAO:curator] xref: TAO:0001794 xref: ZFIN:ZDB-ANAT-100805-45 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005481 name: prootic-exoccipital joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired." [TAO:curator] xref: TAO:0002034 xref: ZFIN:ZDB-ANAT-100805-46 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005482 name: prootic-pterosphenoid joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the prootic and pterosphenoid. Prootic-pterosphenoid joint is paired." [TAO:curator] xref: TAO:0002033 xref: ZFIN:ZDB-ANAT-100805-47 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005483 name: pterosphenoid-orbitosphenoid joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired." [TAO:curator] xref: TAO:0001831 xref: ZFIN:ZDB-ANAT-100805-48 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005484 name: quadrate-anguloarticular joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired." [TAO:curator] xref: TAO:0001802 xref: ZFIN:ZDB-ANAT-100805-49 is_a: UBERON:0002217 ! synovial joint [Term] id: ZFA:0005485 name: quadrate-hyomandibula joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired." [TAO:curator] xref: TAO:0001801 xref: ZFIN:ZDB-ANAT-100805-50 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005486 name: quadrate-metapterygoid joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired." [TAO:curator] xref: TAO:0001803 xref: ZFIN:ZDB-ANAT-100805-51 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005487 name: ventral hypohyal-urohyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired." [TAO:curator] xref: TAO:0001848 xref: ZFIN:ZDB-ANAT-100805-52 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005489 name: endocardial precursor (zebrafish) namespace: zebrafish_anatomy def: "Is a portion of tissue part of the heart primordium which will give rise to the endocardium." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-100805-54 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003084 ! heart primordium [Term] id: ZFA:0005490 name: myocardial precursor (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue that will develop into the myocardium." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-100805-55 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003084 ! heart primordium [Term] id: ZFA:0005491 name: optic furrow (zebrafish) namespace: zebrafish_anatomy def: "Groove that is in the ventral optic cup remnant of the optic fissure." [ZFIN:ZDB-PUB-090819-12] synonym: "optic fissure" RELATED [] xref: ZFIN:ZDB-ANAT-100805-56 is_a: UBERON:0006846 ! groove relationship: develops_from UBERON:0005412 ! optic fissure relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: ZFA:0005492 name: pro-otic fossa (zebrafish) namespace: zebrafish_anatomy xref: TAO:0002090 xref: ZFIN:ZDB-ANAT-100805-57 is_a: UBERON:0004704 ! bone fossa [Term] id: ZFA:0005493 name: recessus lateralis (zebrafish) namespace: zebrafish_anatomy def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals. See also Di Dario (2004)." [TAO:curator] xref: TAO:0001799 xref: ZFIN:ZDB-ANAT-100805-58 is_a: UBERON:0000464 ! anatomical space [Term] id: ZFA:0005495 name: skin flap (zebrafish) namespace: zebrafish_anatomy def: "Surface structure that is a portion of skin that projects or hangs from the body." [TAO:curator] xref: TAO:0001951 xref: ZFIN:ZDB-ANAT-100805-60 is_a: UBERON:0002199 ! integument [Term] id: ZFA:0005497 name: epihyal-ceratohyal joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired." [TAO:curator] xref: TAO:0001842 xref: ZFIN:ZDB-ANAT-100805-62 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005498 name: epihyal-branchiostegal ray joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired." [TAO:curator] xref: TAO:0001849 xref: ZFIN:ZDB-ANAT-100805-63 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005499 name: circulus (zebrafish) namespace: zebrafish_anatomy def: "Fine ridges on surface of scale, often parallel to the circumference of scale." [TAO:curator, http:www.briancoad.com/Dictionary/Complete_Dictionary_Nov_2011.htm] synonym: "circuli" EXACT PLURAL [] xref: TAO:0002051 xref: ZFIN:ZDB-ANAT-100805-64 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0002542 ! scale [Term] id: ZFA:0005500 name: prootic bulla (zebrafish) namespace: zebrafish_anatomy def: "Is a bony partially gas filled sphere located ventral and anterior to the inner ear. The prootic bulla is paired." [ZFIN:Curator] xref: TAO:0002111 xref: ZFIN:ZDB-ANAT-100805-65 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: ZFA:0005501 name: interopercular-mandibular ligament (zebrafish) namespace: zebrafish_anatomy def: "Interopercular-mandibular ligament is a ligament that connects the interopercle to an element of the lower jaw, typically the retroarticular." [TAO:curator] xref: TAO:0001687 xref: ZFIN:ZDB-ANAT-100805-66 is_a: UBERON:0008846 ! skeletal ligament [Term] id: ZFA:0005502 name: lateral ethmoid-autopalatine ligament (zebrafish) namespace: zebrafish_anatomy def: "Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine." [TAO:curator] xref: TAO:0001944 xref: ZFIN:ZDB-ANAT-100805-67 is_a: UBERON:0008846 ! skeletal ligament [Term] id: ZFA:0005503 name: lateral ethmoid-ectopterygoid ligament (zebrafish) namespace: zebrafish_anatomy def: "Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid." [TAO:curator] xref: TAO:0001685 xref: ZFIN:ZDB-ANAT-100805-68 is_a: UBERON:0008846 ! skeletal ligament [Term] id: ZFA:0005504 name: vertebra 4-vertebra 5 joint (zebrafish) namespace: zebrafish_anatomy def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5." [TAO:curator] xref: TAO:0001940 xref: ZFIN:ZDB-ANAT-100805-69 is_a: UBERON:0002213 ! cartilaginous joint [Term] id: ZFA:0005505 name: vertebra 5-vertebra 6 joint (zebrafish) namespace: zebrafish_anatomy def: "Joint between the centra, and sometimes the neural arches or parapophyses." [TAO:curator] xref: TAO:0002054 xref: ZFIN:ZDB-ANAT-100805-70 is_a: UBERON:0002213 ! cartilaginous joint [Term] id: ZFA:0005506 name: vertebra 6 - vertebra 7 joint (zebrafish) namespace: zebrafish_anatomy def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7." [TAO:curator] xref: TAO:0002055 xref: ZFIN:ZDB-ANAT-100805-71 is_a: UBERON:0002213 ! cartilaginous joint [Term] id: ZFA:0005508 name: inner mental barbel (zebrafish) namespace: zebrafish_anatomy def: "Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel." [TAO:curator] xref: TAO:0001969 xref: ZFIN:ZDB-ANAT-100805-73 is_a: ZFA:0000622 ! barbel (zebrafish) [Term] id: ZFA:0005510 name: prootic depression (zebrafish) namespace: zebrafish_anatomy def: "Shallow area that exists on the prootic." [TAO:curator] xref: TAO:0002052 xref: ZFIN:ZDB-ANAT-100805-75 is_a: UBERON:0004704 ! bone fossa [Term] id: ZFA:0005511 name: sensory canal tubular ossicle (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal." [TAO:curator] xref: TAO:0001932 xref: ZFIN:ZDB-ANAT-100805-76 is_a: UBERON:0008907 ! dermal bone [Term] id: ZFA:0005512 name: caudal fin principal ray 1 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin." [TAO:curator] synonym: "caudal principal lepidotrichium 1 " EXACT [] synonym: "caudal principal ray 1 " EXACT [] xref: TAO:0001713 xref: ZFIN:ZDB-ANAT-100805-77 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005513 name: caudal fin principal ray 3 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 2." [TAO:curator] synonym: "caudal principal lepidotrichium 3 " EXACT [] synonym: "caudal principal ray 3" EXACT [] xref: TAO:0001715 xref: ZFIN:ZDB-ANAT-100805-78 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005514 name: caudal fin principal ray 2 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 1." [TAO:curator] synonym: "caudal principal lepidotrichium 2 " EXACT [] synonym: "caudal principal ray 2" EXACT [] xref: TAO:0001714 xref: ZFIN:ZDB-ANAT-100805-79 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005515 name: caudal fin principal ray 4 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 3." [TAO:curator] synonym: "caudal principal lepidotrichium 4 " EXACT [] synonym: "caudal principal ray 4" EXACT [] xref: TAO:0001716 xref: ZFIN:ZDB-ANAT-100805-80 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005516 name: caudal fin principal ray 5 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 4." [TAO:curator] synonym: "caudal principal lepidotrichium 5" EXACT [] synonym: "caudal principal ray 5" EXACT [] xref: TAO:0001717 xref: ZFIN:ZDB-ANAT-100805-81 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005517 name: caudal fin principal ray 6 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 5." [TAO:curator] synonym: "caudal principal lepidotrichium 6" EXACT [] synonym: "caudal principal ray 6" EXACT [] xref: TAO:0001718 xref: ZFIN:ZDB-ANAT-100805-82 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005518 name: caudal fin principal ray 7 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 6." [TAO:curator] synonym: "caudal principal lepidotrichium 7" EXACT [] synonym: "caudal principal ray 7" EXACT [] xref: TAO:0001719 xref: ZFIN:ZDB-ANAT-100805-83 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005519 name: caudal fin principal ray 8 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 7." [TAO:curator] synonym: "caudal principal lepidotrichium 8" EXACT [] synonym: "caudal principal ray 8" EXACT [] xref: TAO:0001720 xref: ZFIN:ZDB-ANAT-100805-84 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005520 name: caudal fin principal ray 9 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 8." [TAO:curator] synonym: "caudal principal lepidotrichium 9" EXACT [] synonym: "caudal principal ray 9" EXACT [] xref: TAO:0001721 xref: ZFIN:ZDB-ANAT-100805-85 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005521 name: caudal fin principal ray 10 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 9." [TAO:curator] synonym: "caudal principal lepidotrichium 10" EXACT [] synonym: "caudal principal ray 10" EXACT [] xref: TAO:0001722 xref: ZFIN:ZDB-ANAT-100805-86 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005522 name: caudal fin principal ray 11 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 10." [TAO:curator] synonym: "caudal principal lepidotrichium 11" EXACT [] synonym: "caudal principal ray 11" EXACT [] xref: TAO:0001723 xref: ZFIN:ZDB-ANAT-100805-87 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005523 name: caudal fin principal ray 12 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 11." [TAO:curator] synonym: "caudal principal lepidotrichium 12" EXACT [] synonym: "caudal principal ray 12" EXACT [] xref: TAO:0001724 xref: ZFIN:ZDB-ANAT-100805-88 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005524 name: caudal fin principal ray 14 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 13." [TAO:curator] synonym: "caudal principal lepidotrichium 14" EXACT [] synonym: "caudal principal ray 14" EXACT [] xref: TAO:0001726 xref: ZFIN:ZDB-ANAT-100805-89 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005525 name: caudal fin principal ray 15 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 14." [TAO:curator] synonym: "caudal principal lepidotrichium 15" EXACT [] synonym: "caudal principal ray 15" EXACT [] xref: TAO:0001727 xref: ZFIN:ZDB-ANAT-100805-90 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005526 name: caudal fin principal ray 16 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 15." [TAO:curator] synonym: "caudal principal lepidotrichium 16" EXACT [] synonym: "caudal principal ray 16" EXACT [] xref: TAO:0001728 xref: ZFIN:ZDB-ANAT-100805-91 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005527 name: caudal fin principal ray 17 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 16." [TAO:curator] synonym: "caudal principal lepidotrichium 17" EXACT [] synonym: "caudal principal ray 17" EXACT [] xref: TAO:0001729 xref: ZFIN:ZDB-ANAT-100805-92 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005528 name: caudal fin principal ray 18 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 17." [TAO:curator] synonym: "caudal principal lepidotrichium 18" EXACT [] synonym: "caudal principal ray 18" EXACT [] xref: TAO:0001730 xref: ZFIN:ZDB-ANAT-100805-93 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005529 name: caudal fin principal ray 19 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 18." [TAO:curator] synonym: "caudal principal lepidotrichium 19" EXACT [] synonym: "caudal principal ray 19" EXACT [] xref: TAO:0001731 xref: ZFIN:ZDB-ANAT-100805-94 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005530 name: lateral line scale (zebrafish) namespace: zebrafish_anatomy def: "Scale that is associated with the lateral line sensory canal." [TAO:curator] xref: TAO:0001824 xref: ZFIN:ZDB-ANAT-100805-95 is_a: UBERON:0002542 ! scale [Term] id: ZFA:0005531 name: bony shelf above orbit (zebrafish) namespace: zebrafish_anatomy def: "The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit." [TAO:curator] xref: TAO:0001686 xref: ZFIN:ZDB-ANAT-100805-96 is_a: UBERON:0000477 ! anatomical cluster [Term] id: ZFA:0005532 name: bony plate (zebrafish) namespace: zebrafish_anatomy def: "Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series." [TAO:curator] xref: TAO:0002053 xref: ZFIN:ZDB-ANAT-100805-97 is_a: UBERON:0008907 ! dermal bone [Term] id: ZFA:0005533 name: branched caudal fin ray (zebrafish) namespace: zebrafish_anatomy def: "Caudal fin lepidotrichium that is distally branched." [TAO:curator] xref: TAO:0002062 xref: ZFIN:ZDB-ANAT-100805-98 is_a: ZFA:0001550 ! caudal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005534 name: branched dorsal fin ray (zebrafish) namespace: zebrafish_anatomy def: "Dorsal fin ray that is distally branched." [ZFIN:curator] xref: TAO:0001785 xref: ZFIN:ZDB-ANAT-100805-99 is_a: ZFA:0001418 ! dorsal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005535 name: branched anal fin ray (zebrafish) namespace: zebrafish_anatomy def: "Anal fin lepidotrichium that is distally branched." [TAO:curator] synonym: "anal fin branched ray" EXACT [] xref: TAO:0001992 xref: ZFIN:ZDB-ANAT-100805-100 is_a: ZFA:0001421 ! anal fin lepidotrichium (zebrafish) [Term] id: ZFA:0005537 name: lateral fontanel of frontal (zebrafish) namespace: zebrafish_anatomy def: "Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired." [TAO:curator] xref: TAO:0002011 xref: ZFIN:ZDB-ANAT-100805-102 is_a: UBERON:0002221 ! fontanelle [Term] id: ZFA:0005538 name: rib of vertebra 1 (zebrafish) namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the first centrum." [TAO:curator] xref: TAO:0001879 xref: ZFIN:ZDB-ANAT-100805-103 is_a: UBERON:0002228 ! rib [Term] id: ZFA:0005539 name: rib of vertebra 2 (zebrafish) namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the second centrum." [TAO:curator] xref: TAO:0001878 xref: ZFIN:ZDB-ANAT-100805-104 is_a: UBERON:0002228 ! rib [Term] id: ZFA:0005540 name: rib of vertebra 3 (zebrafish) namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the third centrum." [TAO:curator] xref: TAO:0001880 xref: ZFIN:ZDB-ANAT-100805-105 is_a: UBERON:0002228 ! rib [Term] id: ZFA:0005541 name: rib of vertebra 4 (zebrafish) namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the fourth centrum." [TAO:curator] xref: TAO:0001881 xref: ZFIN:ZDB-ANAT-100805-106 is_a: UBERON:0002228 ! rib [Term] id: ZFA:0005542 name: rib of vertebra 5 (zebrafish) namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the fifth centrum." [TAO:curator] xref: TAO:0001751 xref: ZFIN:ZDB-ANAT-100805-107 is_a: UBERON:0002228 ! rib [Term] id: ZFA:0005543 name: rib of vertebra 6 (zebrafish) namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the sixth centrum." [TAO:curator] xref: TAO:0001750 xref: ZFIN:ZDB-ANAT-100805-108 is_a: UBERON:0002228 ! rib [Term] id: ZFA:0005544 name: hyomandibular-otic region joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired." [TAO:curator] xref: TAO:0001947 xref: ZFIN:ZDB-ANAT-100805-109 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005545 name: pectoral fin actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Actinotrichium that is part of the pectoral fin." [TAO:curator] xref: TAO:0000544 xref: ZFIN:ZDB-ANAT-100805-110 is_a: ZFA:0005435 ! actinotrichium (zebrafish) relationship: part_of UBERON:0000151 ! pectoral fin [Term] id: ZFA:0005546 name: pelvic fin actinotrichium (zebrafish) namespace: zebrafish_anatomy def: "Actinotrichium that is part of the pelvic fin." [TAO:curator] xref: TAO:0000596 xref: ZFIN:ZDB-ANAT-100805-111 is_a: ZFA:0005435 ! actinotrichium (zebrafish) relationship: part_of UBERON:0000152 ! pelvic fin [Term] id: ZFA:0005547 name: pectoral fin lepidotrichium 1 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched." [TAO:curator] xref: TAO:0001761 xref: ZFIN:ZDB-ANAT-100805-112 is_a: ZFA:0001551 ! pectoral fin lepidotrichium (zebrafish) [Term] id: ZFA:0005548 name: pectoral fin lepidotrichium 2 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001762 xref: ZFIN:ZDB-ANAT-100805-113 is_a: ZFA:0001551 ! pectoral fin lepidotrichium (zebrafish) [Term] id: ZFA:0005549 name: pectoral fin lepidotrichium 3 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001763 xref: ZFIN:ZDB-ANAT-100805-114 is_a: ZFA:0001551 ! pectoral fin lepidotrichium (zebrafish) [Term] id: ZFA:0005550 name: pectoral fin lepidotrichium 6 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001766 xref: ZFIN:ZDB-ANAT-100805-115 is_a: ZFA:0001551 ! pectoral fin lepidotrichium (zebrafish) [Term] id: ZFA:0005551 name: pectoral fin lepidotrichium 7 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001767 xref: ZFIN:ZDB-ANAT-100805-116 is_a: ZFA:0001551 ! pectoral fin lepidotrichium (zebrafish) [Term] id: ZFA:0005552 name: pectoral fin lepidotrichium 5 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray , usually branched and segmented." [TAO:curator] xref: TAO:0001765 xref: ZFIN:ZDB-ANAT-100805-117 is_a: ZFA:0001551 ! pectoral fin lepidotrichium (zebrafish) [Term] id: ZFA:0005553 name: pectoral fin lepidotrichium 4 (zebrafish) namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001764 xref: ZFIN:ZDB-ANAT-100805-118 is_a: ZFA:0001551 ! pectoral fin lepidotrichium (zebrafish) [Term] id: ZFA:0005554 name: pelvic fin lepidotrichium 1 (zebrafish) namespace: zebrafish_anatomy def: "First lepidotrichium of pelvic fin." [ZFIN:curator] xref: TAO:0001776 xref: ZFIN:ZDB-ANAT-100805-119 is_a: ZFA:0001552 ! pelvic fin lepidotrichium (zebrafish) [Term] id: ZFA:0005555 name: pelvic fin lepidotrichium 2 (zebrafish) namespace: zebrafish_anatomy def: "Second lepidotrichium of pelvic fin." [ZFIN:curator] xref: TAO:0001777 xref: ZFIN:ZDB-ANAT-100805-120 is_a: ZFA:0001552 ! pelvic fin lepidotrichium (zebrafish) [Term] id: ZFA:0005556 name: pelvic fin lepidotrichium 4 (zebrafish) namespace: zebrafish_anatomy def: "Fourth lepidotrichium of pelvic fin." [ZFIN:curator] xref: TAO:0001779 xref: ZFIN:ZDB-ANAT-100805-121 is_a: ZFA:0001552 ! pelvic fin lepidotrichium (zebrafish) [Term] id: ZFA:0005557 name: pelvic fin lepidotrichium 3 (zebrafish) namespace: zebrafish_anatomy def: "Third lepidotrichium of pelvic fin." [ZFIN:curator] xref: TAO:0001778 xref: ZFIN:ZDB-ANAT-100805-122 is_a: ZFA:0001552 ! pelvic fin lepidotrichium (zebrafish) [Term] id: ZFA:0005558 name: orbit (zebrafish) namespace: zebrafish_anatomy def: "Anatomical space that is the concavity containing the eye." [TAO:curator] xref: TAO:0001967 xref: ZFIN:ZDB-ANAT-100805-123 is_a: UBERON:0000464 ! anatomical space [Term] id: ZFA:0005559 name: vascular sprouts (zebrafish) namespace: zebrafish_anatomy def: "Portion of vessel wall that extends to form a new vessel." [ZFIN:curator] synonym: "angiogenic sprout" RELATED [] xref: ZFIN:ZDB-ANAT-101006-1 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002049 ! vasculature [Term] id: ZFA:0005560 name: parasphenoid-basioccipital joint (zebrafish) namespace: zebrafish_anatomy def: "Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is paired." [TAO:curator] xref: TAO:0001832 xref: ZFIN:ZDB-ANAT-101006-2 is_a: UBERON:0000982 ! skeletal joint [Term] id: ZFA:0005571 name: ventral canal eye (zebrafish) namespace: zebrafish_anatomy def: "Duct present in the angle where the cornea meets the ciliary zone that absorbs the aqueous humor." [ZFIN:ZDB-PUB-050701-15] xref: ZFIN:ZDB-ANAT-110121-11 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: ZFA:0005577 name: tegmental nucleus (zebrafish) namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-110313-3 is_a: UBERON:0009661 ! midbrain nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: ZFA:0005579 name: NCC ionocyte (zebrafish) namespace: zebrafish_anatomy def: "Integument ionocyte rich in Na-Cl co-transporter (NCC) activity." [ZFIN:ZDB-PUB-090318-15] subset: cell_slim ! cell_slim synonym: "NCC cell" EXACT [] xref: ZFIN:ZDB-ANAT-110313-5 is_a: ZFA:0005325 ! integument ionocyte (zebrafish) relationship: part_of UBERON:0002199 ! integument [Term] id: ZFA:0005580 name: rostral pars anterior (zebrafish) namespace: zebrafish_anatomy def: "Rostral portion of pars anterior of the adenohypophysis where corticotropes and lactotropes localize." [ZFIN:ZDB-PUB-080616-4] synonym: "rostral pars distalis" EXACT [] xref: ZFIN:ZDB-ANAT-110523-2 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006964 ! pars distalis of adenohypophysis [Term] id: ZFA:0005581 name: proximal pars anterior (zebrafish) namespace: zebrafish_anatomy def: "Caudal portion of pars anterior of the adenohypophysis where somatotropes, thyrotropes and gonadotropes are localized. The proximal pars anterior has functional homology to the mammalian pars tuberalis, secreting the same hormones." [ZFIN:ZDB-PUB-080616-4] synonym: " proximal pars distalis" EXACT [] xref: ZFIN:ZDB-ANAT-110523-3 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006964 ! pars distalis of adenohypophysis [Term] id: ZFA:0005582 name: dorsal proneural cluster (zebrafish) namespace: zebrafish_anatomy def: "Cluster of cells along the edge of the neural plate that have the potential to become neuroblast." [ZFIN:ZDB-PUB-990921-1] xref: ZFIN:ZDB-ANAT-110523-4 is_a: ZFA:0000068 ! proneural cluster (zebrafish) [Term] id: ZFA:0005583 name: ventral proneural cluster (zebrafish) namespace: zebrafish_anatomy def: "Cluster of cells along the center of the neural plate that have the potential to become neuroblast." [ZFIN:ZDB-PUB-990921-1] xref: ZFIN:ZDB-ANAT-110523-5 is_a: ZFA:0000068 ! proneural cluster (zebrafish) [Term] id: ZFA:0005584 name: developing mesonephric nephron (zebrafish) namespace: zebrafish_anatomy def: "Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-110523-6 is_a: UBERON:0001285 ! nephron [Term] id: ZFA:0005585 name: developing mesonephric proximal tubule (zebrafish) namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-110523-7 is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0001231 ! nephron tubule relationship: part_of UBERON:0007653 ! capillary loop nephron relationship: part_of ZFA:0005584 ! developing mesonephric nephron (zebrafish) [Term] id: ZFA:0005587 name: nephron progenitor (zebrafish) namespace: zebrafish_anatomy def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFIN:ZDB-PUB-110131-33] xref: ZFIN:ZDB-ANAT-110523-9 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000080 ! mesonephros [Term] id: ZFA:0005591 name: developing mesonephric distal tubule (zebrafish) namespace: zebrafish_anatomy xref: ZFIN:ZDB-ANAT-110523-13 is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0001231 ! nephron tubule relationship: part_of UBERON:0007653 ! capillary loop nephron relationship: part_of ZFA:0005584 ! developing mesonephric nephron (zebrafish) [Term] id: ZFA:0005595 name: caudal fin principal ray 13 (zebrafish) namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 12." [TAO:curator] synonym: "caudal principal lepidotrichium 13" EXACT [] synonym: "caudal principal ray 13" EXACT [] xref: TAO:0001725 xref: ZFIN:ZDB-ANAT-111214-3 is_a: ZFA:0001585 ! caudal fin principal ray (zebrafish) [Term] id: ZFA:0005596 name: paired fin (zebrafish) namespace: zebrafish_anatomy def: "Fin that is one of a pair located ventrally on the organism." [TAO:curator] xref: TAO:0002278 xref: ZFIN:ZDB-ANAT-111214-4 is_a: UBERON:0008897 ! fin relationship: develops_from UBERON:0002531 ! fin bud [Term] id: ZFA:0005597 name: median fin (zebrafish) namespace: zebrafish_anatomy def: "Fin that is an unpaired fin located in the sagittal plane of the organism." [TAO:curator] xref: TAO:0002276 xref: ZFIN:ZDB-ANAT-111214-5 is_a: UBERON:0008897 ! fin relationship: develops_from ZFA:0000040 ! median fin fold (zebrafish) [Term] id: ZFA:0005600 name: sinoatrial region (zebrafish) namespace: zebrafish_anatomy def: "Region at venious pole of heart tube that initiates heart beat." [ZFIN:ZDB-PUB-101115-23] xref: ZFIN:ZDB-ANAT-111214-8 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002350 ! conducting system of heart relationship: part_of UBERON:0004141 ! heart tube [Term] id: ZFA:0005601 name: sinoatrial ring (zebrafish) namespace: zebrafish_anatomy def: "Ring of cardiac conduction tissue around the sinoatrial region of the heart tube that performs pacemaker function." [ZFIN:ZDB-PUB-101115-23] xref: ZFIN:ZDB-ANAT-111214-9 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0005600 ! sinoatrial region (zebrafish) relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: ZFA:0005602 name: supraneural 10 (zebrafish) namespace: zebrafish_anatomy def: "Supraneural located posterior to supraneural 9. This supraneural does not appear in most specimens." [ZFIN:ZDB-PUB-031103-13] xref: ZFIN:ZDB-ANAT-111214-10 is_a: ZFA:0001397 ! post-Weberian supraneural (zebrafish) [Term] id: ZFA:0006000 name: intermediate hypothalamus (zebrafish) namespace: zebrafish_anatomy def: "Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe." [ZFIN:ZDB-PUB-001018-1, ZFIN:ZDB-PUB-020730-6, ZFIN:ZDB-PUB-081114-19] synonym: "Hi" EXACT [] xref: TAO:0006000 xref: ZFIN:ZDB-ANAT-090922-289 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: ZFA:0007001 name: dorso-rostral cluster (zebrafish) namespace: zebrafish_anatomy def: "Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC)." [ZFIN:ZDB-PUB-961014-955] synonym: "dorsal rostral cluster" EXACT [] synonym: "dorsorostral cluster" EXACT [] synonym: "drc" EXACT [] xref: TAO:0007001 xref: ZFIN:ZDB-ANAT-060331-69 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001893 ! telencephalon [Term] id: ZFA:0007002 name: ventro-rostral cluster (zebrafish) namespace: zebrafish_anatomy def: "Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC)." [ZFIN:ZDB-PUB-961014-955] synonym: "ventral rostral cluster" EXACT [] synonym: "ventrorostral cluster" EXACT [] synonym: "vrc" EXACT [] xref: TAO:0007002 xref: ZFIN:ZDB-ANAT-060331-70 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: ZFA:0007003 name: ventro-caudal cluster (zebrafish) namespace: zebrafish_anatomy def: "Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC)." [ZFIN:ZDB-PUB-961014-955] synonym: "vcc" EXACT [] synonym: "ventral caudal cluster" EXACT [] synonym: "ventrocaudal cluster" EXACT [] xref: TAO:0007003 xref: ZFIN:ZDB-ANAT-060331-71 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001891 ! midbrain [Term] id: ZFA:0007004 name: epiphysial cluster (zebrafish) namespace: zebrafish_anatomy def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction." [ZFIN:ZDB-PUB-961014-955] synonym: "ec" EXACT [] xref: TAO:0007004 xref: ZFIN:ZDB-ANAT-060331-72 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001905 ! pineal body [Term] id: ZFA:0007005 name: hemal prezygapophysis (zebrafish) namespace: zebrafish_anatomy alt_id: ZFA:0001380 def: "Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygapophyses." [ZFIN:curator] synonym: "haemal prezygapophysis" EXACT [] synonym: "hemal prezygopophysis" EXACT [] xref: TAO:0007005 xref: ZFIN:ZDB-ANAT-070928-187 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0006065 ! hemal arch [Term] id: ZFA:0007008 name: ventral intermandibularis anterior (zebrafish) namespace: zebrafish_anatomy def: "Is a mandibular muscle that attaches to Meckel's cartilage and functions during jaw closing." [ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-061010-9] synonym: "ventral intermandibulari anterior" EXACT PLURAL [] xref: TAO:0007008 xref: ZFIN:ZDB-ANAT-080417-127 is_a: UBERON:0001630 ! muscle organ relationship: develops_from ZFA:0000369 ! intermandibularis (zebrafish) [Term] id: ZFA:0007010 name: eminentia thalami (zebrafish) namespace: zebrafish_anatomy def: "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development." [ISBN:0444517383, ZFIN:YMB] xref: TAO:0007010 xref: ZFIN:ZDB-ANAT-070928-191 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001890 ! forebrain [Term] id: ZFA:0007011 name: vagal root (zebrafish) namespace: zebrafish_anatomy def: "Part of cranial nerve X." [ZFIN:curator] synonym: "rX" EXACT [] synonym: "vagus root" EXACT [] xref: TAO:0007011 xref: ZFIN:ZDB-ANAT-070928-192 is_a: UBERON:0006843 ! root of cranial nerve relationship: part_of UBERON:0001759 ! vagus nerve [Term] id: ZFA:0007012 name: lateral forebrain bundle (zebrafish) namespace: zebrafish_anatomy synonym: "lateral forebrain bundles" EXACT PLURAL [] xref: TAO:0007012 xref: ZFIN:ZDB-ANAT-070928-193 is_a: UBERON:0002316 ! white matter [Term] id: ZFA:0007013 name: preplacodal ectoderm (zebrafish) namespace: zebrafish_anatomy def: "Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes." [ZFIN:curator] synonym: "panplacodal ectoderm" EXACT [ZFIN:ZDB-PUB-070122-31] xref: TAO:0007013 xref: ZFIN:ZDB-ANAT-070928-194 is_a: UBERON:0005497 ! non-neural ectoderm [Term] id: ZFA:0007014 name: anterior presumptive neural plate (zebrafish) namespace: zebrafish_anatomy def: "Rostral portion of embryonic tissue that gives rise to the anterior neural plate." [ZFIN:curator] xref: TAO:0007014 xref: ZFIN:ZDB-ANAT-070928-195 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0007284 ! presumptive neural plate [Term] id: ZFA:0007015 name: posterior presumptive neural plate (zebrafish) namespace: zebrafish_anatomy xref: TAO:0007015 xref: ZFIN:ZDB-ANAT-070928-196 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0007284 ! presumptive neural plate [Term] id: ZFA:0007023 name: posterior neural keel (zebrafish) namespace: zebrafish_anatomy xref: TAO:0007023 xref: ZFIN:ZDB-ANAT-070928-204 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0003057 ! chordal neural plate relationship: part_of UBERON:0007135 ! neural keel [Term] id: ZFA:0007024 name: anterior neural keel (zebrafish) namespace: zebrafish_anatomy def: "Rostral portion of the neural keel. Develops into the anterior neural rod." [ZFIN:curator] xref: TAO:0007024 xref: ZFIN:ZDB-ANAT-070928-205 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0003056 ! pre-chordal neural plate relationship: part_of UBERON:0007135 ! neural keel [Term] id: ZFA:0007025 name: midbrain neural keel (zebrafish) namespace: zebrafish_anatomy def: "Portion of neural keel that gives rise to the midbrain neural rod." [ZFIN:curator] xref: TAO:0007025 xref: ZFIN:ZDB-ANAT-070928-206 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0009611 ! midbrain neural plate relationship: part_of ZFA:0007024 ! anterior neural keel (zebrafish) [Term] id: ZFA:0007026 name: forebrain neural keel (zebrafish) namespace: zebrafish_anatomy def: "Anterior portion of anterior neural keel that gives rise to the forebrain neural rod." [ZFIN:curator] xref: TAO:0007026 xref: ZFIN:ZDB-ANAT-070928-207 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0009610 ! forebrain neural plate relationship: part_of ZFA:0007024 ! anterior neural keel (zebrafish) [Term] id: ZFA:0007027 name: forebrain midbrain boundary neural keel (zebrafish) namespace: zebrafish_anatomy def: "Portion of anterior neural keel that gives rise to the forebrain midbrain boundary neural rod." [ZFIN:curator] xref: TAO:0007027 xref: ZFIN:ZDB-ANAT-070928-208 is_a: UBERON:0006800 ! anatomical line relationship: develops_from UBERON:0009612 ! forebrain midbrain boundary neural plate relationship: part_of ZFA:0007024 ! anterior neural keel (zebrafish) [Term] id: ZFA:0007028 name: spinal cord neural keel (zebrafish) namespace: zebrafish_anatomy xref: TAO:0007028 xref: ZFIN:ZDB-ANAT-070928-209 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0007023 ! posterior neural keel (zebrafish) [Term] id: ZFA:0007029 name: hindbrain neural keel (zebrafish) namespace: zebrafish_anatomy def: "Portion of posterior neural keel that gives rise to the hindbrain neural rod." [ZFIN:curator] xref: TAO:0007029 xref: ZFIN:ZDB-ANAT-070928-210 is_a: UBERON:0000479 ! tissue relationship: develops_from UBERON:0009614 ! hindbrain neural plate relationship: part_of ZFA:0007023 ! posterior neural keel (zebrafish) [Term] id: ZFA:0007030 name: posterior neural rod (zebrafish) namespace: zebrafish_anatomy xref: TAO:0007030 xref: ZFIN:ZDB-ANAT-070928-211 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007023 ! posterior neural keel (zebrafish) relationship: part_of UBERON:0005068 ! neural rod [Term] id: ZFA:0007031 name: anterior neural rod (zebrafish) namespace: zebrafish_anatomy def: "Rostral portion of the neural rod. Develops into the anterior neural tube." [ZFIN:curator] xref: TAO:0007031 xref: ZFIN:ZDB-ANAT-070928-212 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007024 ! anterior neural keel (zebrafish) relationship: part_of UBERON:0005068 ! neural rod [Term] id: ZFA:0007032 name: midbrain neural rod (zebrafish) namespace: zebrafish_anatomy def: "Portion of neural rod that gives rise to the midbrain neural tube." [ZFIN:curator] xref: TAO:0007032 xref: ZFIN:ZDB-ANAT-070928-213 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007025 ! midbrain neural keel (zebrafish) relationship: part_of ZFA:0007031 ! anterior neural rod (zebrafish) [Term] id: ZFA:0007033 name: forebrain midbrain boundary neural rod (zebrafish) namespace: zebrafish_anatomy def: "Portion of anterior neural rod that gives rise to the forebrain midbrain boundary neural tube." [ZFIN:curator] xref: TAO:0007033 xref: ZFIN:ZDB-ANAT-070928-214 is_a: UBERON:0006800 ! anatomical line relationship: develops_from ZFA:0007027 ! forebrain midbrain boundary neural keel (zebrafish) relationship: part_of ZFA:0007031 ! anterior neural rod (zebrafish) [Term] id: ZFA:0007034 name: forebrain neural rod (zebrafish) namespace: zebrafish_anatomy def: "Anterior portion of anterior neural rod that gives rise to the forebrain neural tube." [ZFIN:curator] xref: TAO:0007034 xref: ZFIN:ZDB-ANAT-070928-215 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007026 ! forebrain neural keel (zebrafish) relationship: part_of ZFA:0007031 ! anterior neural rod (zebrafish) [Term] id: ZFA:0007035 name: spinal cord neural rod (zebrafish) namespace: zebrafish_anatomy xref: TAO:0007035 xref: ZFIN:ZDB-ANAT-070928-216 is_a: UBERON:0000479 ! tissue relationship: part_of ZFA:0007030 ! posterior neural rod (zebrafish) [Term] id: ZFA:0007036 name: hindbrain neural rod (zebrafish) namespace: zebrafish_anatomy def: "Portion of posterior neural rod that gives rise to the hindbrain neural tube." [ZFIN:curator] xref: TAO:0007036 xref: ZFIN:ZDB-ANAT-070928-217 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007029 ! hindbrain neural keel (zebrafish) relationship: part_of ZFA:0007030 ! posterior neural rod (zebrafish) [Term] id: ZFA:0007039 name: midbrain neural tube (zebrafish) namespace: zebrafish_anatomy def: "Portion of neural tube that gives rise to the midbrain." [ZFIN:curator] xref: TAO:0007039 xref: ZFIN:ZDB-ANAT-070928-220 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007032 ! midbrain neural rod (zebrafish) relationship: part_of UBERON:0003080 ! anterior neural tube [Term] id: ZFA:0007040 name: forebrain midbrain boundary neural tube (zebrafish) namespace: zebrafish_anatomy def: "Portion of anterior neural tube that gives rise to the forebrain midbrain boundary." [ZFIN:curator] xref: TAO:0007040 xref: ZFIN:ZDB-ANAT-070928-221 is_a: UBERON:0006800 ! anatomical line relationship: develops_from ZFA:0007033 ! forebrain midbrain boundary neural rod (zebrafish) relationship: part_of UBERON:0003080 ! anterior neural tube [Term] id: ZFA:0007041 name: forebrain neural tube (zebrafish) namespace: zebrafish_anatomy def: "Anterior portion of anterior neural rod that gives rise to the forebrain." [ZFIN:curator] xref: TAO:0007041 xref: ZFIN:ZDB-ANAT-070928-222 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007034 ! forebrain neural rod (zebrafish) relationship: part_of UBERON:0003080 ! anterior neural tube [Term] id: ZFA:0007042 name: spinal cord neural tube (zebrafish) namespace: zebrafish_anatomy xref: TAO:0007042 xref: ZFIN:ZDB-ANAT-070928-223 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0003076 ! posterior neural tube [Term] id: ZFA:0007043 name: hindbrain neural tube (zebrafish) namespace: zebrafish_anatomy def: "Portion of posterior neural tube that gives rise to the hindbrain." [ZFIN:curator] xref: TAO:0007043 xref: ZFIN:ZDB-ANAT-070928-224 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007036 ! hindbrain neural rod (zebrafish) relationship: part_of UBERON:0003076 ! posterior neural tube [Term] id: ZFA:0007045 name: midbrain hindbrain boundary neural keel (zebrafish) namespace: zebrafish_anatomy def: "Portion of neural keel that gives rise to the midbrain hindbrain boundary neural rod." [ZFIN:curator] synonym: "midbrain-hindbrain boundary neural keel" EXACT [] xref: TAO:0007045 xref: ZFIN:ZDB-ANAT-070928-226 is_a: UBERON:0006800 ! anatomical line relationship: develops_from UBERON:0009615 ! midbrain hindbrain boundary neural plate relationship: part_of UBERON:0007135 ! neural keel [Term] id: ZFA:0007046 name: midbrain hindbrain boundary neural rod (zebrafish) namespace: zebrafish_anatomy def: "Portion of neural rod that gives rise to the midbrain hindbrain boundary neural tube." [ZFIN:curator] synonym: "midbrain-hindbrain boundary neural rod" EXACT [] xref: TAO:0007046 xref: ZFIN:ZDB-ANAT-070928-227 is_a: UBERON:0006800 ! anatomical line relationship: develops_from ZFA:0007045 ! midbrain hindbrain boundary neural keel (zebrafish) relationship: part_of UBERON:0005068 ! neural rod [Term] id: ZFA:0007047 name: midbrain hindbrain boundary neural tube (zebrafish) namespace: zebrafish_anatomy def: "Portion of neural tube that gives rise to the midbrain hindbrain boundary." [ZFIN:curator] synonym: "midbrain-hindbrain boundary neural tube" EXACT [] xref: TAO:0007047 xref: ZFIN:ZDB-ANAT-070928-228 is_a: UBERON:0006800 ! anatomical line relationship: develops_from ZFA:0007046 ! midbrain hindbrain boundary neural rod (zebrafish) relationship: part_of UBERON:0001049 ! neural tube [Term] id: ZFA:0007048 name: ventral intermandibularis posterior (zebrafish) namespace: zebrafish_anatomy def: "Is a mandibular muscle that attaches Meckel's cartilage to the basihyal cartilage and functions in jaw opening." [ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-061010-9] synonym: "ventral intermandibulari posterior" EXACT PLURAL [] xref: TAO:0007048 xref: ZFIN:ZDB-ANAT-080417-128 is_a: UBERON:0001630 ! muscle organ relationship: develops_from ZFA:0000369 ! intermandibularis (zebrafish) [Term] id: ZFA:0007049 name: adductor mandibulae (zebrafish) namespace: zebrafish_anatomy def: "Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing." [ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-050318-5] synonym: "dorsal adductor mandibulae" EXACT [] xref: TAO:0007049 xref: ZFIN:ZDB-ANAT-080417-129 is_a: ZFA:0000236 ! mandibular muscle (zebrafish) [Term] id: ZFA:0007050 name: constrictor dorsalis (zebrafish) namespace: zebrafish_anatomy synonym: "constrictors dorsalis" EXACT PLURAL [] xref: TAO:0007050 xref: ZFIN:ZDB-ANAT-080417-130 is_a: ZFA:0000236 ! mandibular muscle (zebrafish) [Term] id: ZFA:0007051 name: ventral interhyoideus (zebrafish) namespace: zebrafish_anatomy def: "Is a hyoid muscle that has attachment sites on the basihyal and the posterior end of the ceratohyals and functions in jaw opening." [ZFIN:ZDB-PUB-020703-2] synonym: "ventral interhyoidei" EXACT PLURAL [] xref: TAO:0007051 xref: ZFIN:ZDB-ANAT-080417-131 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0007052 name: hyohyoideus (zebrafish) namespace: zebrafish_anatomy def: "Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure." [ZFIN:ZDB-PUB-020703-2] xref: TAO:0007052 xref: ZFIN:ZDB-ANAT-080417-132 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0007053 name: dorsal adductor hyomandibulae (zebrafish) namespace: zebrafish_anatomy def: "Is a hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics." [ZFIN:ZDB-PUB-020703-2] synonym: "dorsal adductors hyomandibulae" EXACT PLURAL [] xref: TAO:0007053 xref: ZFIN:ZDB-ANAT-080417-133 is_a: UBERON:0005493 ! hyoid muscle [Term] id: ZFA:0007054 name: pillar of the anterior semicircular canal (zebrafish) namespace: zebrafish_anatomy def: "Pillar of the semicircular canal around whose perimeter runs the anterior semicircular canal." [ZFIN:ZDB-PUB-961014-383] synonym: "anterior hub of the semicircular canal" EXACT [] synonym: "anterior pillar" EXACT [] synonym: "anterior pillar of the semicircular canal" EXACT [] synonym: "horizontal hub" RELATED [] xref: TAO:0007054 xref: ZFIN:ZDB-ANAT-080417-134 is_a: ZFA:0001717 ! pillar of the semicircular canal (zebrafish) relationship: develops_from ZFA:0000232 ! otic vesicle lateral protrusion (zebrafish) relationship: develops_from ZFA:0000469 ! otic vesicle anterior protrusion (zebrafish) relationship: part_of UBERON:0001841 ! anterior semicircular canal [Term] id: ZFA:0007055 name: pillar of the lateral semicircular canal (zebrafish) namespace: zebrafish_anatomy def: "Pillar of the semicircular canal around whose perimeter runs the lateral semicircular canal." [ZFIN:ZDB-PUB-961014-383] synonym: "lateral hub of the semicircular canal" EXACT [] synonym: "ventral bar" EXACT [] synonym: "ventral pillar" EXACT [] synonym: "ventral piller of the semicircular canal" EXACT [] xref: TAO:0007055 xref: ZFIN:ZDB-ANAT-080417-135 is_a: ZFA:0001717 ! pillar of the semicircular canal (zebrafish) relationship: develops_from ZFA:0001716 ! otic vesicle ventral protrusion (zebrafish) relationship: part_of UBERON:0001843 ! lateral semicircular canal [Term] id: ZFA:0007056 name: pillar of the posterior semicircular canal (zebrafish) namespace: zebrafish_anatomy def: "Pillar of the semicircular canal around whose perimeter runs the posterior semicircular canal." [ZFIN:ZDB-PUB-961014-383] synonym: "horizontal hub" RELATED [] synonym: "posterior hub of the semicircular canal" EXACT [] synonym: "posterior pillar" EXACT [] synonym: "posterior pillar of the semicircular" EXACT [] xref: ZFIN:ZDB-ANAT-080417-136 is_a: ZFA:0001717 ! pillar of the semicircular canal (zebrafish) relationship: develops_from ZFA:0000232 ! otic vesicle lateral protrusion (zebrafish) relationship: develops_from ZFA:0000412 ! otic vesicle posterior protrusion (zebrafish) relationship: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: ZFA:0007059 name: neurogenic field (zebrafish) namespace: zebrafish_anatomy def: "Portion of tissue fated to develop into neurogenic placode." [ZFIN:curator] synonym: "neurogenic fields" EXACT PLURAL [] xref: TAO:0007059 xref: ZFIN:ZDB-ANAT-080417-139 is_a: UBERON:0000479 ! tissue relationship: develops_from ZFA:0007013 ! preplacodal ectoderm (zebrafish) [Term] id: ZFA:0007060 name: dorsolateral field (zebrafish) namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into a dorsolateral placode." [ZFIN:curator] synonym: "dorsolateral fields" EXACT PLURAL [] xref: TAO:0007060 xref: ZFIN:ZDB-ANAT-080417-140 is_a: ZFA:0007059 ! neurogenic field (zebrafish) [Term] id: ZFA:0007061 name: epibranchial field (zebrafish) namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into an epibranchial placode." [ZFIN:curator] synonym: "epibranchial fields" EXACT PLURAL [] xref: TAO:0007061 xref: ZFIN:ZDB-ANAT-080417-141 is_a: ZFA:0007059 ! neurogenic field (zebrafish) [Term] id: ZFA:0007062 name: olfactory field (zebrafish) namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into the olfactory placode." [ZFIN:curator] synonym: "olfactory fields" EXACT PLURAL [] xref: TAO:0007062 xref: ZFIN:ZDB-ANAT-080417-142 is_a: ZFA:0007059 ! neurogenic field (zebrafish) [Term] id: ZFA:0007067 name: vagal ganglion (zebrafish) namespace: zebrafish_anatomy synonym: "gX" EXACT [] xref: TAO:0007067 xref: ZFIN:ZDB-ANAT-100614-90 is_a: UBERON:0009127 ! epibranchial ganglion [Term] id: ZFA:0007069 name: otic squamous epithelium (zebrafish) namespace: zebrafish_anatomy def: "Is an otic epithelium composed of cells with a squamous morphology." [ISBN:019514502X] xref: ZFIN:ZDB-ANAT-110523-17 is_a: UBERON:0003249 ! epithelium of otic placode [Term] id: ZFA:0007070 name: otic sensory epithelium (zebrafish) namespace: zebrafish_anatomy def: "Is an otic epithelium that is a neuroepithelium which is pseudostratified and senses sound." [ZFIN:curator] xref: ZFIN:ZDB-ANAT-110523-18 is_a: UBERON:0003249 ! epithelium of otic placode [Term] id: ZFA:0009122 name: auditory hair cell namespace: zebrafish_anatomy is_obsolete: true xref: ZFIN:ZDB-ANAT-011113-512 [Term] id: ZFA:0009161 name: metanephric mesenchyme stem cell namespace: zebrafish_anatomy is_obsolete: true comment: No metanephrose in zebrafish. Consider nephrogenic mesenchyme stem cell ZFA:0009187. subset: cell_slim ! cell_slim synonym: "metanephric mesenchyme stem cells" EXACT PLURAL [] xref: CL:0000324 xref: TAO:0009161 xref: ZFIN:ZDB-ANAT-070308-124 [Term] id: ZFA:0009172 name: non-visual cell (sensu Vertebrata) namespace: zebrafish_anatomy is_obsolete: true comment: Obsoleted because CL obsoleted. Consider pigment cell ZFA:0009090 subset: cell_slim ! cell_slim synonym: "non-visual cells (sensu Vertebrata)" EXACT PLURAL [] xref: CL:0000344 xref: TAO:0009172 xref: ZFIN:ZDB-ANAT-070308-134 [Term] id: ZFS:0000000 name: Unknown namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-050211-1 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000005 name: Cleavage:16-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-20 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000006 name: Cleavage:32-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-25 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000007 name: Cleavage:64-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-28 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000008 name: Blastula:128-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-7 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000009 name: Blastula:256-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-1 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000010 name: Blastula:512-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-14 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000011 name: Blastula:1k-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-22 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000012 name: Blastula:High namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-27 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000013 name: Blastula:Oblong namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-24 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000014 name: Blastula:Sphere namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-21 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000015 name: Blastula:Dome namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-19 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000016 name: Blastula:30%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-17 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000017 name: Gastrula:50%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-6 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000018 name: Gastrula:Germ-ring namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-3 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000019 name: Gastrula:Shield namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-2 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000020 name: Gastrula:75%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-18 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000021 name: Gastrula:90%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-29 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000022 name: Gastrula:Bud namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-12 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000023 name: Segmentation:1-4 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-23 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000024 name: Segmentation:5-9 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-5 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000025 name: Segmentation:10-13 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-020626-1 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000026 name: Segmentation:14-19 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-30 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000027 name: Segmentation:20-25 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-16 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000028 name: Segmentation:26+ somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-34 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000029 name: Pharyngula:Prim-5 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-10 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000030 name: Pharyngula:Prim-15 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-32 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000031 name: Pharyngula:Prim-25 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-13 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000032 name: Pharyngula:High-pec namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-31 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000033 name: Hatching:Long-pec namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-9 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000034 name: Hatching:Pec-fin namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-26 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000035 name: Larval:Protruding-mouth namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-8 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000036 name: Larval:Day 4 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-35 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000037 name: Larval:Day 5 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-36 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000038 name: Larval:Day 6 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-37 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000039 name: Larval:Days 7-13 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-47 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000040 name: Larval:Days 14-20 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-48 is_a: UBERON:0000105 ! life cycle stage [Term] id: ZFS:0000041 name: Larval:Days 21-29 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-49 is_a: UBERON:0000105 ! life cycle stage [Typedef] id: part_of name: part_of xref: BFO:0000050 is_transitive: true [Typedef] id: develops_from name: develops_from xref: RO:0002202 is_transitive: true transitive_over: part_of ! part_of holds_over_chain: part_of develops_from